Query 011305
Match_columns 489
No_of_seqs 380 out of 3191
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 23:53:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738 AAA+-type ATPase [Post 100.0 9.1E-57 2E-61 447.4 31.5 306 179-486 181-491 (491)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-49 4.2E-54 417.7 23.7 270 194-482 419-692 (693)
3 COG1223 Predicted ATPase (AAA+ 100.0 8.3E-49 1.8E-53 373.0 19.8 300 140-469 45-359 (368)
4 COG1222 RPT1 ATP-dependent 26S 100.0 2.4E-48 5.2E-53 385.2 23.5 249 200-467 142-394 (406)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 2.9E-48 6.3E-53 403.5 23.5 286 192-485 494-790 (802)
6 KOG0739 AAA+-type ATPase [Post 100.0 2.7E-48 5.9E-53 375.3 21.6 298 186-486 110-438 (439)
7 KOG0736 Peroxisome assembly fa 100.0 3.2E-47 7E-52 404.1 24.9 284 200-484 663-952 (953)
8 KOG0737 AAA+-type ATPase [Post 100.0 1.3E-43 2.9E-48 353.3 24.8 285 199-485 82-382 (386)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 4.7E-44 1E-48 372.2 20.9 283 203-488 184-519 (802)
10 KOG0734 AAA+-type ATPase conta 100.0 3.9E-41 8.4E-46 345.8 19.0 240 204-465 299-541 (752)
11 TIGR01243 CDC48 AAA family ATP 100.0 6E-40 1.3E-44 367.9 27.9 287 197-485 441-731 (733)
12 KOG0740 AAA+-type ATPase [Post 100.0 9.4E-41 2E-45 343.5 18.7 289 192-487 136-427 (428)
13 COG0464 SpoVK ATPases of the A 100.0 1.1E-37 2.3E-42 335.6 24.3 257 198-479 231-492 (494)
14 KOG0728 26S proteasome regulat 100.0 1.7E-37 3.6E-42 294.4 19.4 254 196-468 134-391 (404)
15 KOG0731 AAA+-type ATPase conta 100.0 2.1E-37 4.5E-42 335.6 20.9 246 202-467 304-555 (774)
16 KOG0735 AAA+-type ATPase [Post 100.0 3.2E-37 6.9E-42 325.5 21.3 236 197-435 654-893 (952)
17 PTZ00454 26S protease regulato 100.0 8.5E-37 1.8E-41 318.2 24.4 251 200-469 136-390 (398)
18 KOG0652 26S proteasome regulat 100.0 6.2E-37 1.3E-41 291.9 18.0 248 200-467 162-414 (424)
19 KOG0727 26S proteasome regulat 100.0 1.1E-36 2.4E-41 289.1 19.5 247 201-466 147-397 (408)
20 KOG0726 26S proteasome regulat 100.0 4.7E-37 1E-41 296.6 16.1 247 200-466 176-427 (440)
21 CHL00195 ycf46 Ycf46; Provisio 100.0 4.8E-36 1E-40 319.0 25.3 255 203-482 222-483 (489)
22 PRK03992 proteasome-activating 100.0 8.8E-36 1.9E-40 311.1 24.1 255 199-472 121-379 (389)
23 KOG0729 26S proteasome regulat 100.0 3.4E-36 7.3E-41 287.7 17.0 249 199-467 167-420 (435)
24 COG0465 HflB ATP-dependent Zn 100.0 1.4E-35 3E-40 316.6 18.6 245 201-465 142-390 (596)
25 PTZ00361 26 proteosome regulat 100.0 1.3E-34 2.8E-39 303.9 23.2 249 200-467 174-426 (438)
26 TIGR01241 FtsH_fam ATP-depende 100.0 2.7E-34 5.9E-39 309.1 24.4 247 201-467 47-297 (495)
27 TIGR01242 26Sp45 26S proteasom 100.0 1.2E-32 2.6E-37 285.6 23.6 247 200-465 113-363 (364)
28 KOG0730 AAA+-type ATPase [Post 100.0 3.6E-33 7.8E-38 294.9 17.6 257 204-488 180-442 (693)
29 CHL00176 ftsH cell division pr 100.0 2.8E-32 6.1E-37 298.4 24.2 244 202-465 176-423 (638)
30 TIGR03689 pup_AAA proteasome A 100.0 9.3E-32 2E-36 286.0 22.9 273 197-485 170-500 (512)
31 KOG0651 26S proteasome regulat 100.0 2.7E-32 5.8E-37 266.0 15.0 248 202-468 125-376 (388)
32 TIGR01243 CDC48 AAA family ATP 100.0 1.9E-31 4.1E-36 299.3 23.4 280 203-486 172-459 (733)
33 PRK10733 hflB ATP-dependent me 100.0 7.3E-30 1.6E-34 281.7 25.6 245 204-468 147-395 (644)
34 KOG0732 AAA+-type ATPase conta 100.0 6.2E-31 1.3E-35 291.9 16.5 264 203-471 259-531 (1080)
35 KOG0741 AAA+-type ATPase [Post 100.0 3.1E-30 6.6E-35 265.5 13.8 270 204-477 214-505 (744)
36 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.3E-29 2.9E-34 291.4 17.0 204 239-468 1627-1880(2281)
37 PLN00020 ribulose bisphosphate 100.0 1.7E-28 3.7E-33 247.6 21.6 186 239-429 145-353 (413)
38 CHL00181 cbbX CbbX; Provisiona 99.9 7.5E-23 1.6E-27 205.4 17.6 235 209-460 23-281 (287)
39 TIGR02880 cbbX_cfxQ probable R 99.9 2.8E-22 6.1E-27 201.1 17.3 235 210-461 23-281 (284)
40 TIGR02881 spore_V_K stage V sp 99.9 2.5E-22 5.5E-27 199.1 16.4 215 208-433 5-244 (261)
41 KOG0742 AAA+-type ATPase [Post 99.9 1.8E-21 3.9E-26 195.9 21.2 213 203-424 349-589 (630)
42 KOG0736 Peroxisome assembly fa 99.9 4.5E-22 9.8E-27 213.0 17.6 241 243-488 432-680 (953)
43 KOG0744 AAA+-type ATPase [Post 99.9 1.8E-21 4E-26 191.2 13.8 185 207-392 140-342 (423)
44 PF00004 AAA: ATPase family as 99.9 2.8E-21 6E-26 169.9 13.5 130 245-376 1-132 (132)
45 KOG0735 AAA+-type ATPase [Post 99.8 1.6E-20 3.4E-25 199.6 15.4 254 209-486 408-673 (952)
46 KOG0743 AAA+-type ATPase [Post 99.8 2.5E-20 5.5E-25 191.4 15.3 224 206-439 198-435 (457)
47 PF05496 RuvB_N: Holliday junc 99.8 6.1E-19 1.3E-23 168.2 14.5 191 202-421 17-223 (233)
48 COG2256 MGS1 ATPase related to 99.8 5.2E-18 1.1E-22 171.9 17.7 216 203-471 18-244 (436)
49 TIGR00635 ruvB Holliday juncti 99.8 1.6E-17 3.4E-22 168.1 20.2 189 207-424 2-206 (305)
50 PRK00080 ruvB Holliday junctio 99.8 3.7E-17 8E-22 167.5 21.4 220 202-468 18-253 (328)
51 TIGR00763 lon ATP-dependent pr 99.8 3.1E-17 6.7E-22 185.4 20.7 231 210-463 321-584 (775)
52 TIGR02639 ClpA ATP-dependent C 99.8 5.1E-17 1.1E-21 182.7 22.0 236 195-466 168-430 (731)
53 PRK12323 DNA polymerase III su 99.7 2.6E-17 5.7E-22 177.7 16.7 191 199-424 6-230 (700)
54 TIGR02902 spore_lonB ATP-depen 99.7 7.6E-17 1.6E-21 174.8 19.3 222 195-465 51-332 (531)
55 PRK14956 DNA polymerase III su 99.7 7.5E-17 1.6E-21 170.2 17.6 189 199-422 8-225 (484)
56 PRK07003 DNA polymerase III su 99.7 6.9E-17 1.5E-21 176.5 17.6 191 199-424 6-225 (830)
57 PRK14962 DNA polymerase III su 99.7 1.3E-16 2.8E-21 170.2 17.4 178 199-410 4-210 (472)
58 COG2255 RuvB Holliday junction 99.7 3.3E-16 7.1E-21 152.5 18.1 190 203-421 20-225 (332)
59 COG0464 SpoVK ATPases of the A 99.7 1.3E-16 2.7E-21 172.2 17.0 223 229-468 4-229 (494)
60 PRK14958 DNA polymerase III su 99.7 1.5E-16 3.3E-21 171.2 16.5 191 199-424 6-225 (509)
61 PRK14961 DNA polymerase III su 99.7 2.7E-16 5.9E-21 163.2 16.9 190 199-423 6-224 (363)
62 PRK14960 DNA polymerase III su 99.7 3.7E-16 7.9E-21 169.3 17.7 189 200-423 6-223 (702)
63 PRK04195 replication factor C 99.7 5.6E-16 1.2E-20 166.6 18.2 193 199-424 4-204 (482)
64 PRK11034 clpA ATP-dependent Cl 99.7 5.4E-16 1.2E-20 173.3 18.5 238 194-467 171-435 (758)
65 PRK07994 DNA polymerase III su 99.7 2E-15 4.3E-20 165.3 22.1 189 200-423 7-224 (647)
66 PRK14949 DNA polymerase III su 99.7 8.5E-16 1.9E-20 170.8 19.4 191 199-424 6-225 (944)
67 PRK14964 DNA polymerase III su 99.7 7.8E-16 1.7E-20 163.9 17.4 189 201-424 5-222 (491)
68 PRK13342 recombination factor 99.7 1.5E-15 3.3E-20 160.3 19.5 154 201-392 4-166 (413)
69 PRK08691 DNA polymerase III su 99.7 1.3E-15 2.8E-20 166.3 17.7 191 199-424 6-225 (709)
70 PRK06645 DNA polymerase III su 99.7 2.5E-15 5.3E-20 161.2 19.5 191 199-424 11-234 (507)
71 PRK07940 DNA polymerase III su 99.7 2.3E-15 5E-20 157.2 17.6 187 207-421 3-216 (394)
72 PRK14969 DNA polymerase III su 99.7 2E-15 4.3E-20 163.4 16.8 191 199-424 6-225 (527)
73 PLN03025 replication factor C 99.7 4.3E-15 9.3E-20 151.6 18.4 184 199-421 3-199 (319)
74 PRK14951 DNA polymerase III su 99.7 2.1E-15 4.6E-20 164.6 17.0 189 199-422 6-228 (618)
75 PRK12402 replication factor C 99.6 4.7E-15 1E-19 151.6 18.3 191 199-422 5-226 (337)
76 PRK07764 DNA polymerase III su 99.6 4.6E-15 1E-19 167.0 19.5 192 200-422 6-224 (824)
77 PRK14952 DNA polymerase III su 99.6 5.8E-15 1.3E-19 160.6 19.5 190 200-424 4-224 (584)
78 KOG0989 Replication factor C, 99.6 1.4E-14 3E-19 142.6 20.0 187 197-419 24-227 (346)
79 TIGR02397 dnaX_nterm DNA polym 99.6 3.9E-15 8.5E-20 153.5 16.8 187 200-421 5-220 (355)
80 PRK14957 DNA polymerase III su 99.6 5.1E-15 1.1E-19 159.7 18.3 190 199-423 6-224 (546)
81 PRK14963 DNA polymerase III su 99.6 3.6E-15 7.8E-20 160.3 16.9 178 199-410 4-209 (504)
82 PRK05563 DNA polymerase III su 99.6 3.9E-15 8.5E-20 162.3 17.3 190 199-423 6-224 (559)
83 PHA02544 44 clamp loader, smal 99.6 1.4E-14 3.1E-19 147.2 19.8 162 199-390 11-173 (316)
84 PRK14959 DNA polymerase III su 99.6 6E-15 1.3E-19 160.3 17.8 181 199-410 6-212 (624)
85 PRK05896 DNA polymerase III su 99.6 7.3E-15 1.6E-19 158.9 17.8 189 199-422 6-223 (605)
86 TIGR02928 orc1/cdc6 family rep 99.6 2.7E-14 5.8E-19 147.9 21.2 170 204-391 10-213 (365)
87 COG0466 Lon ATP-dependent Lon 99.6 5.8E-15 1.3E-19 158.7 16.3 164 210-390 324-508 (782)
88 PRK14965 DNA polymerase III su 99.6 7.2E-15 1.6E-19 160.8 17.5 187 200-421 7-222 (576)
89 TIGR03345 VI_ClpV1 type VI sec 99.6 5.3E-15 1.1E-19 168.1 16.9 195 195-412 173-390 (852)
90 PRK05342 clpX ATP-dependent pr 99.6 7.4E-15 1.6E-19 154.1 16.7 220 210-429 72-380 (412)
91 PRK07133 DNA polymerase III su 99.6 8.4E-15 1.8E-19 161.3 17.6 195 199-422 8-222 (725)
92 PRK10865 protein disaggregatio 99.6 7.9E-15 1.7E-19 167.0 17.6 178 195-395 164-359 (857)
93 TIGR00362 DnaA chromosomal rep 99.6 2.6E-14 5.5E-19 150.6 20.2 198 204-426 105-317 (405)
94 PRK00149 dnaA chromosomal repl 99.6 1.9E-14 4.1E-19 153.6 18.9 199 203-425 116-328 (450)
95 KOG2004 Mitochondrial ATP-depe 99.6 7.6E-15 1.6E-19 157.1 14.8 166 209-391 411-597 (906)
96 KOG2028 ATPase related to the 99.6 2.4E-14 5.2E-19 143.3 17.3 157 199-390 128-294 (554)
97 PRK10787 DNA-binding ATP-depen 99.6 2.2E-14 4.8E-19 161.4 19.1 227 210-465 323-582 (784)
98 PTZ00112 origin recognition co 99.6 7.2E-14 1.6E-18 153.7 22.1 224 206-468 752-1009(1164)
99 PRK14953 DNA polymerase III su 99.6 2E-14 4.4E-19 154.0 17.5 190 199-423 6-224 (486)
100 PRK09111 DNA polymerase III su 99.6 2.4E-14 5.2E-19 156.5 17.8 196 199-423 14-237 (598)
101 PRK06647 DNA polymerase III su 99.6 2.4E-14 5.3E-19 155.7 17.3 189 200-423 7-224 (563)
102 PRK06893 DNA replication initi 99.6 5.7E-14 1.2E-18 136.8 18.1 187 203-421 10-205 (229)
103 PF05673 DUF815: Protein of un 99.6 3.3E-14 7.2E-19 137.5 16.2 191 203-422 21-244 (249)
104 TIGR03346 chaperone_ClpB ATP-d 99.6 2.3E-14 5.1E-19 163.6 17.5 196 194-412 158-376 (852)
105 PRK06305 DNA polymerase III su 99.6 5.4E-14 1.2E-18 149.7 18.8 176 201-410 9-214 (451)
106 PRK08451 DNA polymerase III su 99.6 2.7E-14 5.7E-19 153.6 16.4 192 199-425 4-224 (535)
107 CHL00095 clpC Clp protease ATP 99.6 1.2E-14 2.6E-19 165.4 14.6 197 194-413 164-382 (821)
108 PRK14955 DNA polymerase III su 99.6 6.6E-14 1.4E-18 147.1 18.8 178 199-410 6-220 (397)
109 PRK00411 cdc6 cell division co 99.6 2.3E-13 5.1E-18 142.4 22.6 227 205-468 26-285 (394)
110 TIGR03420 DnaA_homol_Hda DnaA 99.6 7.5E-14 1.6E-18 134.8 17.4 186 205-425 11-207 (226)
111 TIGR00390 hslU ATP-dependent p 99.6 1.1E-14 2.3E-19 150.8 12.2 249 210-465 13-430 (441)
112 PRK14970 DNA polymerase III su 99.6 5.1E-14 1.1E-18 146.4 17.3 177 200-410 8-201 (367)
113 PRK08084 DNA replication initi 99.6 1.8E-13 3.8E-18 133.9 19.8 185 204-422 17-212 (235)
114 PRK14088 dnaA chromosomal repl 99.6 7.8E-14 1.7E-18 148.2 18.6 197 203-424 99-310 (440)
115 TIGR00382 clpX endopeptidase C 99.6 4.7E-14 1E-18 147.6 16.3 218 210-427 78-384 (413)
116 PRK08903 DnaA regulatory inact 99.6 2E-13 4.4E-18 132.4 19.1 202 204-463 13-224 (227)
117 TIGR02903 spore_lon_C ATP-depe 99.6 1.9E-13 4.2E-18 150.6 21.2 233 196-466 141-431 (615)
118 PRK05201 hslU ATP-dependent pr 99.6 1.3E-14 2.8E-19 150.4 10.7 246 210-465 16-432 (443)
119 PRK12422 chromosomal replicati 99.6 2.3E-13 5.1E-18 144.5 20.3 201 203-423 105-317 (445)
120 PRK00440 rfc replication facto 99.5 1.4E-13 2.9E-18 139.7 17.4 177 199-410 7-195 (319)
121 PRK13341 recombination factor 99.5 1.3E-13 2.8E-18 153.7 18.5 155 199-391 18-182 (725)
122 COG2812 DnaX DNA polymerase II 99.5 8.5E-14 1.8E-18 148.2 15.6 199 199-426 6-227 (515)
123 PRK14954 DNA polymerase III su 99.5 3.1E-13 6.6E-18 148.2 20.2 177 200-410 7-220 (620)
124 PF00308 Bac_DnaA: Bacterial d 99.5 2E-13 4.3E-18 132.1 16.5 196 203-423 2-212 (219)
125 PRK11034 clpA ATP-dependent Cl 99.5 1.6E-13 3.5E-18 153.5 17.9 206 210-431 459-719 (758)
126 PRK14950 DNA polymerase III su 99.5 1.8E-13 3.9E-18 150.3 17.2 188 199-421 6-223 (585)
127 PRK14948 DNA polymerase III su 99.5 2.6E-13 5.5E-18 149.3 17.4 177 200-410 7-214 (620)
128 PRK14086 dnaA chromosomal repl 99.5 4.7E-13 1E-17 145.1 18.2 167 243-424 315-493 (617)
129 TIGR02639 ClpA ATP-dependent C 99.5 7.7E-13 1.7E-17 149.0 18.8 204 209-430 454-714 (731)
130 TIGR02640 gas_vesic_GvpN gas v 99.5 9.6E-13 2.1E-17 130.7 17.3 134 242-390 21-198 (262)
131 PRK14087 dnaA chromosomal repl 99.5 1.2E-12 2.5E-17 139.5 18.2 170 242-427 141-327 (450)
132 PRK14971 DNA polymerase III su 99.5 9.7E-13 2.1E-17 144.7 17.4 187 201-422 9-225 (614)
133 PRK13407 bchI magnesium chelat 99.5 5.6E-13 1.2E-17 136.3 14.1 161 205-390 4-216 (334)
134 PRK08727 hypothetical protein; 99.5 5E-12 1.1E-16 123.5 19.9 144 243-409 42-195 (233)
135 cd00009 AAA The AAA+ (ATPases 99.4 1.8E-12 3.9E-17 114.1 14.3 138 213-375 2-150 (151)
136 PRK05642 DNA replication initi 99.4 4.8E-12 1.1E-16 123.7 18.8 156 243-421 46-210 (234)
137 COG1474 CDC6 Cdc6-related prot 99.4 5.2E-12 1.1E-16 130.9 19.2 165 208-393 16-206 (366)
138 PRK07471 DNA polymerase III su 99.4 1.3E-11 2.9E-16 127.9 21.4 187 203-421 13-240 (365)
139 CHL00081 chlI Mg-protoporyphyr 99.4 3.1E-12 6.7E-17 131.2 15.4 162 204-390 12-232 (350)
140 PRK05564 DNA polymerase III su 99.4 8.2E-12 1.8E-16 127.2 18.0 172 207-413 2-185 (313)
141 COG0593 DnaA ATPase involved i 99.4 5.9E-12 1.3E-16 130.7 16.6 239 202-466 80-333 (408)
142 PRK09112 DNA polymerase III su 99.4 1.9E-11 4.2E-16 126.1 19.2 194 203-426 17-247 (351)
143 PRK06620 hypothetical protein; 99.4 1.7E-11 3.8E-16 118.2 17.1 174 203-422 10-192 (214)
144 COG3829 RocR Transcriptional r 99.4 2.2E-13 4.7E-18 143.4 4.2 222 202-464 238-497 (560)
145 COG2607 Predicted ATPase (AAA+ 99.4 1.8E-11 3.8E-16 117.1 16.5 192 203-423 54-277 (287)
146 TIGR03345 VI_ClpV1 type VI sec 99.4 1.1E-11 2.3E-16 141.3 17.6 203 209-430 566-833 (852)
147 KOG0991 Replication factor C, 99.4 9E-12 1.9E-16 118.5 14.0 187 199-421 17-213 (333)
148 COG0542 clpA ATP-binding subun 99.4 1.1E-11 2.4E-16 137.0 16.5 204 209-430 491-757 (786)
149 COG0470 HolB ATPase involved i 99.3 2.5E-11 5.3E-16 123.2 16.8 150 209-387 1-178 (325)
150 TIGR02030 BchI-ChlI magnesium 99.3 3E-11 6.4E-16 123.9 17.3 156 207-390 2-219 (337)
151 KOG1969 DNA replication checkp 99.3 1.7E-11 3.6E-16 132.1 15.8 211 198-429 260-517 (877)
152 TIGR03346 chaperone_ClpB ATP-d 99.3 3.8E-11 8.2E-16 137.4 19.4 208 209-432 565-830 (852)
153 TIGR02442 Cob-chelat-sub cobal 99.3 9E-12 2E-16 138.1 13.6 156 207-390 2-214 (633)
154 CHL00095 clpC Clp protease ATP 99.3 2.4E-11 5.1E-16 138.6 17.0 205 209-431 509-785 (821)
155 COG2204 AtoC Response regulato 99.3 2.8E-12 6E-17 135.0 8.4 205 206-444 138-376 (464)
156 PRK07399 DNA polymerase III su 99.3 1.3E-10 2.9E-15 118.2 19.9 179 207-416 2-219 (314)
157 TIGR02974 phageshock_pspF psp 99.3 1.9E-11 4E-16 125.4 13.6 195 211-439 1-230 (329)
158 PRK10865 protein disaggregatio 99.3 5.6E-11 1.2E-15 135.7 18.7 205 208-431 567-832 (857)
159 TIGR01650 PD_CobS cobaltochela 99.3 1.5E-11 3.1E-16 124.6 12.0 140 242-392 64-235 (327)
160 PHA02244 ATPase-like protein 99.3 2.2E-11 4.7E-16 124.8 12.5 127 242-381 119-265 (383)
161 PRK09087 hypothetical protein; 99.3 9.1E-11 2E-15 114.1 16.0 169 243-465 45-222 (226)
162 PF01078 Mg_chelatase: Magnesi 99.3 2.7E-12 5.8E-17 121.8 5.0 45 208-266 2-46 (206)
163 PRK13531 regulatory ATPase Rav 99.3 2.1E-10 4.5E-15 121.4 19.5 154 209-389 20-193 (498)
164 COG0542 clpA ATP-binding subun 99.3 2.8E-11 6E-16 133.8 13.0 179 195-395 156-351 (786)
165 PRK08058 DNA polymerase III su 99.3 1.4E-10 3.1E-15 118.9 17.3 149 207-388 3-180 (329)
166 TIGR00678 holB DNA polymerase 99.3 8.7E-11 1.9E-15 110.6 14.4 127 241-389 13-167 (188)
167 TIGR01817 nifA Nif-specific re 99.3 4.2E-11 9.1E-16 130.6 14.0 216 203-459 190-439 (534)
168 PRK11608 pspF phage shock prot 99.3 9.6E-11 2.1E-15 120.1 15.4 193 208-438 5-236 (326)
169 COG1224 TIP49 DNA helicase TIP 99.3 4.4E-10 9.6E-15 112.9 19.5 131 302-468 292-435 (450)
170 PRK15424 propionate catabolism 99.2 3.2E-11 6.9E-16 130.5 11.2 159 206-391 216-417 (538)
171 COG0714 MoxR-like ATPases [Gen 99.2 6.5E-11 1.4E-15 121.4 13.0 154 210-390 25-203 (329)
172 TIGR02329 propionate_PrpR prop 99.2 8.7E-11 1.9E-15 127.1 14.4 217 205-461 208-466 (526)
173 PRK10820 DNA-binding transcrip 99.2 1.1E-10 2.5E-15 126.7 15.3 202 203-438 198-433 (520)
174 PF07728 AAA_5: AAA domain (dy 99.2 4.6E-12 1E-16 113.2 3.1 110 244-368 1-139 (139)
175 PRK05707 DNA polymerase III su 99.2 1.8E-10 3.9E-15 117.9 15.1 131 240-390 20-178 (328)
176 PRK11388 DNA-binding transcrip 99.2 1.5E-10 3.4E-15 128.8 15.3 197 204-438 320-550 (638)
177 COG1220 HslU ATP-dependent pro 99.2 3.2E-10 7E-15 113.1 15.5 155 303-465 252-433 (444)
178 COG3604 FhlA Transcriptional r 99.2 3E-11 6.6E-16 125.9 7.4 204 204-427 218-456 (550)
179 PRK05022 anaerobic nitric oxid 99.2 3.8E-10 8.2E-15 122.4 16.1 197 207-437 185-415 (509)
180 smart00382 AAA ATPases associa 99.2 1.2E-10 2.5E-15 101.3 9.5 128 242-377 2-147 (148)
181 PRK15429 formate hydrogenlyase 99.2 2.1E-10 4.6E-15 128.7 14.1 197 205-436 372-603 (686)
182 TIGR00764 lon_rel lon-related 99.2 9.6E-10 2.1E-14 121.2 18.5 53 203-269 12-64 (608)
183 PF00158 Sigma54_activat: Sigm 99.2 2.8E-10 6E-15 105.7 12.1 121 211-357 1-144 (168)
184 PRK11331 5-methylcytosine-spec 99.2 4E-10 8.6E-15 118.4 14.6 145 208-379 174-361 (459)
185 PF07724 AAA_2: AAA domain (Cd 99.2 1.1E-10 2.4E-15 108.7 8.8 114 241-358 2-131 (171)
186 COG1219 ClpX ATP-dependent pro 99.1 4.7E-11 1E-15 118.2 5.9 131 210-342 62-204 (408)
187 PRK04132 replication factor C 99.1 9.2E-10 2E-14 123.9 16.9 147 241-410 563-723 (846)
188 COG1221 PspF Transcriptional r 99.1 4.7E-11 1E-15 123.7 5.9 196 204-427 73-309 (403)
189 PF13177 DNA_pol3_delta2: DNA 99.1 4.8E-10 1E-14 103.5 11.4 133 213-376 1-160 (162)
190 TIGR03015 pepcterm_ATPase puta 99.1 4.4E-09 9.5E-14 104.2 18.5 190 243-466 44-267 (269)
191 KOG0741 AAA+-type ATPase [Post 99.1 8.5E-10 1.8E-14 115.4 13.5 146 240-388 536-684 (744)
192 TIGR02031 BchD-ChlD magnesium 99.1 1.3E-09 2.7E-14 120.0 15.0 132 243-390 17-174 (589)
193 PRK06871 DNA polymerase III su 99.1 8.5E-09 1.8E-13 105.2 19.1 128 241-389 23-178 (325)
194 TIGR00368 Mg chelatase-related 99.1 8.6E-10 1.9E-14 118.7 12.2 145 206-380 189-394 (499)
195 KOG2035 Replication factor C, 99.1 4.7E-09 1E-13 102.4 15.6 177 200-410 4-220 (351)
196 PF05621 TniB: Bacterial TniB 99.1 5.2E-09 1.1E-13 104.5 16.4 223 210-470 35-293 (302)
197 PF06068 TIP49: TIP49 C-termin 99.1 1.2E-09 2.6E-14 111.3 11.8 66 207-279 22-89 (398)
198 TIGR00602 rad24 checkpoint pro 99.0 2.8E-09 6.1E-14 117.2 15.6 203 198-425 73-326 (637)
199 PRK07993 DNA polymerase III su 99.0 5.5E-09 1.2E-13 107.3 16.8 132 240-388 22-178 (334)
200 smart00350 MCM minichromosome 99.0 1.3E-09 2.8E-14 118.2 12.7 166 209-391 203-401 (509)
201 PRK08769 DNA polymerase III su 99.0 7.7E-09 1.7E-13 105.3 16.2 170 214-416 9-206 (319)
202 PRK06090 DNA polymerase III su 99.0 2.5E-08 5.3E-13 101.6 18.8 144 214-388 8-178 (319)
203 PF07726 AAA_3: ATPase family 99.0 2.4E-10 5.1E-15 100.4 3.5 106 244-369 1-130 (131)
204 PRK12377 putative replication 99.0 2E-09 4.3E-14 106.0 10.2 143 201-368 66-222 (248)
205 TIGR02915 PEP_resp_reg putativ 99.0 2.1E-09 4.6E-14 114.4 11.1 195 207-438 137-368 (445)
206 PRK06964 DNA polymerase III su 99.0 3.1E-09 6.7E-14 109.2 11.8 133 240-389 19-203 (342)
207 COG0606 Predicted ATPase with 99.0 1.3E-09 2.7E-14 113.9 9.0 47 206-266 176-222 (490)
208 PRK10923 glnG nitrogen regulat 99.0 3.9E-09 8.5E-14 113.2 12.9 213 207-462 136-385 (469)
209 PRK08116 hypothetical protein; 98.9 3.4E-09 7.4E-14 105.7 10.3 123 242-379 114-251 (268)
210 COG1239 ChlI Mg-chelatase subu 98.9 1.9E-08 4.2E-13 103.8 15.9 162 205-392 13-234 (423)
211 PRK09862 putative ATP-dependen 98.9 7.5E-09 1.6E-13 111.2 13.2 144 207-380 189-391 (506)
212 PRK15115 response regulator Gl 98.9 4.3E-08 9.3E-13 104.4 18.9 193 210-439 135-364 (444)
213 KOG1514 Origin recognition com 98.9 3.1E-08 6.6E-13 107.2 17.5 230 209-470 396-660 (767)
214 KOG0990 Replication factor C, 98.9 1.4E-08 2.9E-13 101.1 13.3 168 197-396 29-209 (360)
215 PRK11361 acetoacetate metaboli 98.9 1.5E-08 3.3E-13 108.1 14.7 197 207-437 141-371 (457)
216 smart00763 AAA_PrkA PrkA AAA d 98.9 3.4E-08 7.4E-13 101.4 16.0 62 208-275 49-118 (361)
217 KOG1942 DNA helicase, TBP-inte 98.9 7.9E-08 1.7E-12 94.6 16.3 94 301-412 296-403 (456)
218 TIGR01818 ntrC nitrogen regula 98.9 1E-08 2.2E-13 109.7 11.0 212 208-462 133-381 (463)
219 KOG0745 Putative ATP-dependent 98.9 6.1E-09 1.3E-13 107.0 8.4 99 243-341 227-332 (564)
220 PRK08181 transposase; Validate 98.9 1.7E-08 3.8E-13 100.5 11.5 126 242-383 106-248 (269)
221 KOG2227 Pre-initiation complex 98.9 2.4E-07 5.2E-12 96.4 19.9 237 209-469 150-419 (529)
222 PRK07952 DNA replication prote 98.8 1.5E-08 3.2E-13 99.6 10.4 111 243-368 100-221 (244)
223 PF14532 Sigma54_activ_2: Sigm 98.8 6.3E-09 1.4E-13 93.2 6.5 126 212-377 1-136 (138)
224 PRK08699 DNA polymerase III su 98.8 3.4E-08 7.3E-13 101.1 12.1 132 240-388 19-183 (325)
225 COG3283 TyrR Transcriptional r 98.8 1.1E-08 2.4E-13 102.9 6.8 204 203-440 198-430 (511)
226 PRK06835 DNA replication prote 98.8 4.3E-08 9.4E-13 100.4 11.1 112 243-369 184-306 (329)
227 PRK13765 ATP-dependent proteas 98.8 1.3E-07 2.7E-12 104.5 15.4 52 202-267 24-75 (637)
228 PRK10365 transcriptional regul 98.7 1.5E-07 3.4E-12 99.9 14.8 206 210-462 140-386 (441)
229 PRK06526 transposase; Provisio 98.7 1.8E-08 3.9E-13 99.7 6.6 73 241-315 97-173 (254)
230 PTZ00111 DNA replication licen 98.7 5E-08 1.1E-12 109.9 9.5 164 209-389 450-656 (915)
231 PF03215 Rad17: Rad17 cell cyc 98.7 2.9E-07 6.3E-12 99.6 14.2 210 197-428 7-269 (519)
232 KOG1051 Chaperone HSP104 and r 98.6 1.9E-07 4E-12 105.1 12.4 129 209-356 562-710 (898)
233 PF01637 Arch_ATPase: Archaeal 98.6 9.8E-08 2.1E-12 91.4 8.9 178 212-412 2-228 (234)
234 PF01695 IstB_IS21: IstB-like 98.6 1.8E-08 3.8E-13 94.5 3.5 72 240-313 45-120 (178)
235 PF13173 AAA_14: AAA domain 98.6 1E-07 2.2E-12 84.2 8.0 69 243-313 3-73 (128)
236 PRK09183 transposase/IS protei 98.6 1.3E-07 2.9E-12 93.8 7.8 74 240-314 100-177 (259)
237 PRK06921 hypothetical protein; 98.6 2.1E-07 4.6E-12 92.7 9.2 68 242-312 117-188 (266)
238 PRK13406 bchD magnesium chelat 98.6 4.3E-07 9.3E-12 99.6 11.9 123 243-381 26-173 (584)
239 PRK08939 primosomal protein Dn 98.5 2.3E-07 5E-12 94.3 8.7 71 241-313 155-229 (306)
240 COG1484 DnaC DNA replication p 98.5 5.1E-07 1.1E-11 89.4 11.0 72 241-314 104-180 (254)
241 KOG2680 DNA helicase TIP49, TB 98.5 4.9E-06 1.1E-10 82.4 17.4 93 357-468 339-432 (454)
242 PRK07276 DNA polymerase III su 98.5 4.4E-06 9.6E-11 84.0 17.3 170 214-421 7-199 (290)
243 PRK05917 DNA polymerase III su 98.5 1.3E-06 2.9E-11 87.6 12.5 118 240-377 17-154 (290)
244 PF13401 AAA_22: AAA domain; P 98.5 1.5E-06 3.2E-11 76.2 11.0 73 242-314 4-100 (131)
245 PRK05818 DNA polymerase III su 98.4 2.3E-06 5.1E-11 84.2 11.7 116 240-377 5-147 (261)
246 PRK07132 DNA polymerase III su 98.4 1.2E-05 2.7E-10 81.3 17.2 125 242-388 18-160 (299)
247 PF05729 NACHT: NACHT domain 98.4 4.8E-06 1E-10 75.4 12.0 140 244-392 2-165 (166)
248 PF12775 AAA_7: P-loop contain 98.3 1.8E-06 3.8E-11 86.4 9.0 136 241-391 32-194 (272)
249 PF12774 AAA_6: Hydrolytic ATP 98.3 5.1E-06 1.1E-10 81.1 11.9 130 243-386 33-176 (231)
250 KOG1970 Checkpoint RAD17-RFC c 98.3 1.3E-05 2.7E-10 85.2 15.5 72 198-274 71-142 (634)
251 KOG0478 DNA replication licens 98.3 8.3E-06 1.8E-10 88.3 14.2 164 210-387 430-623 (804)
252 cd01120 RecA-like_NTPases RecA 98.3 1.1E-05 2.3E-10 72.6 12.0 72 245-316 2-100 (165)
253 KOG2228 Origin recognition com 98.2 7E-06 1.5E-10 82.6 10.9 163 208-390 23-219 (408)
254 KOG0480 DNA replication licens 98.2 1.1E-05 2.4E-10 86.8 12.2 164 208-392 344-544 (764)
255 PF00931 NB-ARC: NB-ARC domain 98.2 2.5E-05 5.4E-10 77.9 13.3 156 241-418 18-201 (287)
256 COG1241 MCM2 Predicted ATPase 98.1 7.3E-06 1.6E-10 90.5 9.3 164 208-390 285-483 (682)
257 KOG0482 DNA replication licens 98.1 1.8E-05 4E-10 83.1 11.4 204 209-424 342-586 (721)
258 PF03969 AFG1_ATPase: AFG1-lik 98.1 7.8E-06 1.7E-10 84.9 8.7 103 239-357 59-168 (362)
259 KOG0477 DNA replication licens 98.1 1.4E-05 3.1E-10 85.7 9.5 170 210-395 450-655 (854)
260 PF00493 MCM: MCM2/3/5 family 98.1 6.1E-07 1.3E-11 92.3 -0.9 162 209-392 24-223 (331)
261 KOG2170 ATPase of the AAA+ sup 98.1 6.8E-05 1.5E-09 74.6 13.4 99 210-316 83-193 (344)
262 PLN03210 Resistant to P. syrin 98.1 6.8E-05 1.5E-09 89.3 16.1 177 204-412 179-389 (1153)
263 TIGR01618 phage_P_loop phage n 98.0 9.6E-06 2.1E-10 78.5 7.1 111 242-354 12-142 (220)
264 TIGR02237 recomb_radB DNA repa 98.0 3.8E-05 8.3E-10 73.3 11.1 80 236-315 6-111 (209)
265 COG3284 AcoR Transcriptional a 98.0 2.9E-06 6.3E-11 91.6 3.5 199 243-470 337-582 (606)
266 PHA00729 NTP-binding motif con 98.0 1.3E-05 2.8E-10 77.7 7.2 25 243-267 18-42 (226)
267 KOG1968 Replication factor C, 98.0 1.6E-05 3.5E-10 90.3 8.2 206 202-426 313-535 (871)
268 COG3267 ExeA Type II secretory 98.0 0.00031 6.8E-09 68.6 15.8 172 244-429 53-255 (269)
269 COG1618 Predicted nucleotide k 98.0 7.6E-05 1.6E-09 68.1 10.7 25 242-266 5-29 (179)
270 PF00910 RNA_helicase: RNA hel 98.0 6.7E-06 1.5E-10 70.4 3.7 23 245-267 1-23 (107)
271 cd01124 KaiC KaiC is a circadi 97.9 0.00011 2.4E-09 68.5 11.7 71 245-315 2-109 (187)
272 PRK09361 radB DNA repair and r 97.9 0.00012 2.5E-09 70.9 11.0 39 238-276 19-60 (225)
273 COG5271 MDN1 AAA ATPase contai 97.8 4E-05 8.6E-10 89.3 8.3 136 241-392 1542-1705(4600)
274 PRK00771 signal recognition pa 97.8 0.0021 4.6E-08 68.4 20.2 37 240-276 93-132 (437)
275 PF13207 AAA_17: AAA domain; P 97.8 2.1E-05 4.6E-10 68.0 4.2 31 245-275 2-32 (121)
276 PF06309 Torsin: Torsin; Inte 97.8 0.00012 2.6E-09 64.4 8.7 52 210-266 26-77 (127)
277 PRK11823 DNA repair protein Ra 97.7 0.00027 5.8E-09 75.7 12.5 79 238-316 76-171 (446)
278 PF09336 Vps4_C: Vps4 C termin 97.7 2E-05 4.4E-10 60.7 2.7 33 452-484 29-62 (62)
279 PRK08118 topology modulation p 97.7 7.7E-05 1.7E-09 69.1 7.0 33 243-275 2-34 (167)
280 PRK14722 flhF flagellar biosyn 97.7 0.00022 4.7E-09 74.3 11.0 115 239-368 134-269 (374)
281 TIGR02688 conserved hypothetic 97.7 0.00018 4E-09 75.4 10.2 63 241-315 208-274 (449)
282 cd01121 Sms Sms (bacterial rad 97.7 0.00037 8E-09 72.8 12.6 79 238-316 78-173 (372)
283 PF14516 AAA_35: AAA-like doma 97.7 0.0019 4.2E-08 66.5 17.3 163 240-412 29-233 (331)
284 COG1485 Predicted ATPase [Gene 97.7 0.00026 5.6E-09 72.1 10.3 102 239-357 62-171 (367)
285 cd01394 radB RadB. The archaea 97.7 0.00036 7.8E-09 67.1 11.0 39 238-276 15-56 (218)
286 PRK08533 flagellar accessory p 97.7 0.00044 9.5E-09 67.5 11.7 77 238-314 20-130 (230)
287 PF05707 Zot: Zonular occluden 97.7 8.8E-05 1.9E-09 70.3 6.6 123 245-377 3-146 (193)
288 PRK15455 PrkA family serine pr 97.7 6.7E-05 1.5E-09 81.3 6.3 63 207-275 74-137 (644)
289 PRK00131 aroK shikimate kinase 97.6 5.4E-05 1.2E-09 69.5 4.7 33 241-273 3-35 (175)
290 KOG0481 DNA replication licens 97.6 0.0031 6.7E-08 66.9 17.7 170 209-387 331-524 (729)
291 PRK07261 topology modulation p 97.6 0.00014 3E-09 67.7 7.1 34 244-277 2-35 (171)
292 KOG1051 Chaperone HSP104 and r 97.6 0.00031 6.7E-09 79.7 11.1 162 208-392 185-365 (898)
293 PHA02624 large T antigen; Prov 97.6 0.00019 4.1E-09 78.1 9.0 123 239-376 428-561 (647)
294 PRK06067 flagellar accessory p 97.6 0.00054 1.2E-08 66.7 11.5 77 238-314 21-133 (234)
295 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.0009 2E-08 65.5 12.8 41 237-277 16-59 (237)
296 PRK12723 flagellar biosynthesi 97.6 0.00074 1.6E-08 70.8 12.8 140 214-368 147-309 (388)
297 PRK14974 cell division protein 97.6 0.0013 2.7E-08 67.9 14.0 73 242-314 140-235 (336)
298 TIGR02012 tigrfam_recA protein 97.6 0.00042 9E-09 70.8 10.3 79 238-316 51-148 (321)
299 cd00983 recA RecA is a bacter 97.6 0.00058 1.2E-08 69.9 11.2 79 238-316 51-148 (325)
300 PF13671 AAA_33: AAA domain; P 97.6 0.00019 4.2E-09 63.7 6.8 34 245-280 2-35 (143)
301 cd01393 recA_like RecA is a b 97.6 0.00059 1.3E-08 65.8 10.7 40 238-277 15-63 (226)
302 COG1373 Predicted ATPase (AAA+ 97.5 0.0018 4E-08 68.3 15.0 132 244-396 39-186 (398)
303 PHA02774 E1; Provisional 97.5 0.00044 9.4E-09 75.1 10.2 34 242-275 434-468 (613)
304 PRK06581 DNA polymerase III su 97.5 0.00076 1.7E-08 65.8 10.6 135 242-393 15-164 (263)
305 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00069 1.5E-08 65.7 10.5 40 238-277 15-63 (235)
306 COG5271 MDN1 AAA ATPase contai 97.5 0.00046 1E-08 80.9 10.1 134 243-391 889-1048(4600)
307 PF06745 KaiC: KaiC; InterPro 97.5 0.0013 2.9E-08 63.5 11.9 77 237-313 14-127 (226)
308 PRK04296 thymidine kinase; Pro 97.5 0.00097 2.1E-08 63.1 10.6 33 243-275 3-38 (190)
309 PRK06762 hypothetical protein; 97.5 0.00044 9.6E-09 63.4 8.0 37 243-279 3-39 (166)
310 PF13191 AAA_16: AAA ATPase do 97.4 0.00013 2.9E-09 67.4 4.4 59 211-278 2-63 (185)
311 COG4650 RtcR Sigma54-dependent 97.4 0.00015 3.3E-09 71.9 4.7 75 242-316 208-297 (531)
312 COG3854 SpoIIIAA ncharacterize 97.4 0.00042 9E-09 66.8 7.5 72 241-312 136-229 (308)
313 KOG2543 Origin recognition com 97.4 0.0018 3.9E-08 66.6 12.5 158 210-391 7-194 (438)
314 cd03283 ABC_MutS-like MutS-lik 97.4 0.0014 3.1E-08 62.5 11.1 71 241-311 24-115 (199)
315 PF00437 T2SE: Type II/IV secr 97.4 0.00029 6.3E-09 70.1 6.6 98 204-311 99-207 (270)
316 PRK13947 shikimate kinase; Pro 97.4 0.00016 3.5E-09 66.6 4.2 32 243-274 2-33 (171)
317 PF10443 RNA12: RNA12 protein; 97.4 0.015 3.3E-07 61.1 19.0 35 359-393 198-232 (431)
318 cd00046 DEXDc DEAD-like helica 97.4 0.00098 2.1E-08 57.4 8.6 24 243-266 1-24 (144)
319 PRK03839 putative kinase; Prov 97.3 0.00018 3.8E-09 67.1 4.0 31 244-274 2-32 (180)
320 PRK10536 hypothetical protein; 97.3 0.0023 4.9E-08 63.3 11.8 45 207-265 53-97 (262)
321 cd01131 PilT Pilus retraction 97.3 0.00041 8.8E-09 66.1 6.4 67 244-310 3-83 (198)
322 KOG2383 Predicted ATPase [Gene 97.3 0.0017 3.7E-08 67.1 11.1 28 239-266 111-138 (467)
323 cd01129 PulE-GspE PulE/GspE Th 97.3 0.00066 1.4E-08 67.7 7.9 92 207-311 58-159 (264)
324 PRK00625 shikimate kinase; Pro 97.3 0.00023 4.9E-09 66.5 4.2 31 244-274 2-32 (173)
325 PRK04328 hypothetical protein; 97.3 0.0037 7.9E-08 61.8 13.0 38 238-275 19-59 (249)
326 cd00464 SK Shikimate kinase (S 97.3 0.00023 5E-09 64.1 4.1 31 244-274 1-31 (154)
327 TIGR00416 sms DNA repair prote 97.3 0.0017 3.6E-08 69.8 11.1 79 238-316 90-185 (454)
328 KOG3347 Predicted nucleotide k 97.3 0.00022 4.7E-09 64.2 3.4 32 243-274 8-39 (176)
329 PF07693 KAP_NTPase: KAP famil 97.3 0.0097 2.1E-07 60.5 16.0 30 240-269 18-47 (325)
330 PF04665 Pox_A32: Poxvirus A32 97.3 0.0027 5.8E-08 62.3 11.1 135 239-390 10-170 (241)
331 PRK05800 cobU adenosylcobinami 97.3 0.0023 5E-08 59.5 10.3 70 244-317 3-92 (170)
332 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0027 5.9E-08 61.2 11.2 22 243-264 30-51 (213)
333 cd00544 CobU Adenosylcobinamid 97.2 0.0024 5.2E-08 59.4 10.2 72 245-318 2-90 (169)
334 PRK13695 putative NTPase; Prov 97.2 0.0018 4E-08 60.0 9.4 23 244-266 2-24 (174)
335 PRK09354 recA recombinase A; P 97.2 0.0024 5.3E-08 65.9 11.1 78 238-315 56-152 (349)
336 cd00227 CPT Chloramphenicol (C 97.2 0.00028 6.1E-09 65.6 3.9 37 242-278 2-38 (175)
337 PRK14532 adenylate kinase; Pro 97.2 0.00031 6.7E-09 65.9 4.1 36 244-281 2-37 (188)
338 PF01745 IPT: Isopentenyl tran 97.2 0.00071 1.5E-08 64.7 6.4 131 244-390 3-139 (233)
339 PF13604 AAA_30: AAA domain; P 97.2 0.0045 9.7E-08 58.9 12.1 34 243-276 19-55 (196)
340 COG4088 Predicted nucleotide k 97.2 0.0023 5E-08 60.8 9.7 24 244-267 3-26 (261)
341 PRK10867 signal recognition pa 97.2 0.014 3.1E-07 62.1 17.0 74 240-313 98-195 (433)
342 TIGR01359 UMP_CMP_kin_fam UMP- 97.2 0.00031 6.8E-09 65.4 4.0 35 245-281 2-36 (183)
343 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0061 1.3E-07 58.9 13.2 40 238-277 12-54 (224)
344 PF00448 SRP54: SRP54-type pro 97.2 0.0015 3.3E-08 62.2 8.6 70 242-311 1-93 (196)
345 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.0037 8E-08 62.1 11.7 39 238-276 32-73 (259)
346 PRK13949 shikimate kinase; Pro 97.2 0.00034 7.4E-09 65.0 4.0 32 243-274 2-33 (169)
347 TIGR00064 ftsY signal recognit 97.2 0.01 2.3E-07 59.4 14.8 37 240-276 70-109 (272)
348 PRK04841 transcriptional regul 97.2 0.0068 1.5E-07 70.2 15.4 151 243-412 33-219 (903)
349 PRK06217 hypothetical protein; 97.2 0.00038 8.2E-09 65.3 4.1 31 244-274 3-33 (183)
350 cd03243 ABC_MutS_homologs The 97.2 0.0041 8.9E-08 59.2 11.2 25 240-264 27-51 (202)
351 COG0563 Adk Adenylate kinase a 97.1 0.00055 1.2E-08 64.2 4.9 35 244-280 2-36 (178)
352 TIGR03499 FlhF flagellar biosy 97.1 0.0028 6.1E-08 63.8 10.4 63 215-277 167-234 (282)
353 TIGR02858 spore_III_AA stage I 97.1 0.00056 1.2E-08 68.3 5.2 68 243-310 112-203 (270)
354 TIGR02782 TrbB_P P-type conjug 97.1 0.00054 1.2E-08 69.5 5.0 69 242-310 132-213 (299)
355 cd01122 GP4d_helicase GP4d_hel 97.1 0.0059 1.3E-07 60.6 12.4 37 239-275 27-67 (271)
356 PRK14531 adenylate kinase; Pro 97.1 0.0005 1.1E-08 64.5 4.4 36 243-280 3-38 (183)
357 cd02020 CMPK Cytidine monophos 97.1 0.00048 1E-08 61.3 3.9 30 245-274 2-31 (147)
358 cd02021 GntK Gluconate kinase 97.1 0.00049 1.1E-08 62.0 3.9 28 245-272 2-29 (150)
359 PRK13948 shikimate kinase; Pro 97.1 0.00062 1.3E-08 64.1 4.7 35 240-274 8-42 (182)
360 cd01428 ADK Adenylate kinase ( 97.1 0.00048 1.1E-08 64.5 4.0 34 245-280 2-35 (194)
361 PRK11889 flhF flagellar biosyn 97.1 0.011 2.3E-07 62.1 14.0 58 215-275 217-277 (436)
362 PRK14530 adenylate kinase; Pro 97.1 0.00056 1.2E-08 65.8 4.5 31 243-273 4-34 (215)
363 PRK09376 rho transcription ter 97.1 0.0016 3.4E-08 68.0 8.0 76 242-317 169-272 (416)
364 TIGR01420 pilT_fam pilus retra 97.1 0.0011 2.3E-08 68.7 6.6 70 242-311 122-205 (343)
365 TIGR00959 ffh signal recogniti 97.1 0.075 1.6E-06 56.6 20.6 73 241-313 98-194 (428)
366 smart00534 MUTSac ATPase domai 97.0 0.0065 1.4E-07 57.1 11.3 20 245-264 2-21 (185)
367 cd03216 ABC_Carb_Monos_I This 97.0 0.004 8.8E-08 57.2 9.7 74 239-312 23-111 (163)
368 cd01128 rho_factor Transcripti 97.0 0.0021 4.6E-08 63.5 8.2 29 240-268 14-42 (249)
369 COG1102 Cmk Cytidylate kinase 97.0 0.00054 1.2E-08 62.6 3.6 28 245-272 3-30 (179)
370 COG2874 FlaH Predicted ATPases 97.0 0.0084 1.8E-07 57.4 11.8 118 239-368 25-178 (235)
371 TIGR02655 circ_KaiC circadian 97.0 0.0075 1.6E-07 65.4 12.9 79 237-315 258-367 (484)
372 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0019 4.1E-08 63.6 7.6 34 245-278 2-38 (249)
373 TIGR01313 therm_gnt_kin carboh 97.0 0.00056 1.2E-08 62.6 3.6 32 245-278 1-32 (163)
374 PRK04301 radA DNA repair and r 97.0 0.0042 9E-08 63.5 10.3 40 238-277 98-146 (317)
375 TIGR02525 plasmid_TraJ plasmid 97.0 0.0011 2.4E-08 69.2 6.1 69 243-311 150-235 (372)
376 cd01130 VirB11-like_ATPase Typ 97.0 0.0013 2.8E-08 61.9 6.1 71 240-310 23-109 (186)
377 COG0703 AroK Shikimate kinase 97.0 0.00058 1.3E-08 63.3 3.6 32 243-274 3-34 (172)
378 PRK13900 type IV secretion sys 97.0 0.0017 3.8E-08 66.8 7.4 70 242-311 160-245 (332)
379 PRK03731 aroL shikimate kinase 97.0 0.00079 1.7E-08 62.1 4.4 32 243-274 3-34 (171)
380 PRK05703 flhF flagellar biosyn 97.0 0.0082 1.8E-07 63.9 12.6 36 242-277 221-261 (424)
381 PLN02674 adenylate kinase 97.0 0.002 4.2E-08 63.5 7.3 38 242-281 31-68 (244)
382 TIGR02236 recomb_radA DNA repa 97.0 0.0057 1.2E-07 62.3 10.9 40 238-277 91-139 (310)
383 TIGR02788 VirB11 P-type DNA tr 97.0 0.0052 1.1E-07 62.7 10.6 72 240-311 142-228 (308)
384 PRK06547 hypothetical protein; 97.0 0.00082 1.8E-08 62.7 4.4 34 241-274 14-47 (172)
385 cd03280 ABC_MutS2 MutS2 homolo 97.0 0.0071 1.5E-07 57.5 10.9 21 243-263 29-49 (200)
386 cd02027 APSK Adenosine 5'-phos 97.0 0.0028 6.2E-08 57.5 7.8 34 245-278 2-38 (149)
387 PTZ00088 adenylate kinase 1; P 97.0 0.00085 1.9E-08 65.5 4.7 36 243-280 7-42 (229)
388 KOG0479 DNA replication licens 97.0 0.0024 5.1E-08 68.7 8.1 184 177-375 268-482 (818)
389 TIGR02238 recomb_DMC1 meiotic 97.0 0.0051 1.1E-07 62.9 10.4 40 238-277 92-140 (313)
390 PRK08154 anaerobic benzoate ca 97.0 0.0012 2.7E-08 67.2 6.0 36 239-274 130-165 (309)
391 PRK13946 shikimate kinase; Pro 97.0 0.00071 1.5E-08 63.6 3.9 33 242-274 10-42 (184)
392 PRK05057 aroK shikimate kinase 97.0 0.00095 2.1E-08 62.1 4.7 34 242-275 4-37 (172)
393 PF08433 KTI12: Chromatin asso 96.9 0.0056 1.2E-07 61.2 10.3 70 245-315 4-84 (270)
394 PRK14528 adenylate kinase; Pro 96.9 0.00084 1.8E-08 63.3 4.2 35 243-279 2-36 (186)
395 PF12780 AAA_8: P-loop contain 96.9 0.08 1.7E-06 53.0 18.5 89 210-310 9-98 (268)
396 PRK12724 flagellar biosynthesi 96.9 0.012 2.5E-07 62.3 12.9 36 242-277 223-262 (432)
397 PRK10416 signal recognition pa 96.9 0.012 2.7E-07 60.2 12.8 61 215-275 86-150 (318)
398 PLN03187 meiotic recombination 96.9 0.0068 1.5E-07 62.7 10.9 40 238-277 122-170 (344)
399 PRK13764 ATPase; Provisional 96.9 0.0013 2.9E-08 72.4 5.9 69 242-311 257-334 (602)
400 COG4619 ABC-type uncharacteriz 96.9 0.0059 1.3E-07 56.5 9.1 28 239-266 26-53 (223)
401 COG1066 Sms Predicted ATP-depe 96.9 0.0085 1.8E-07 62.4 11.3 100 239-338 90-206 (456)
402 cd00984 DnaB_C DnaB helicase C 96.9 0.012 2.6E-07 57.3 12.0 38 238-275 9-50 (242)
403 PRK13833 conjugal transfer pro 96.9 0.0012 2.6E-08 67.6 5.1 69 242-310 144-224 (323)
404 PRK06696 uridine kinase; Valid 96.9 0.0025 5.4E-08 61.8 7.1 38 242-279 22-62 (223)
405 TIGR01360 aden_kin_iso1 adenyl 96.9 0.001 2.2E-08 61.9 4.1 35 243-279 4-38 (188)
406 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0075 1.6E-07 56.5 9.9 73 240-312 23-100 (177)
407 PRK05973 replicative DNA helic 96.9 0.011 2.3E-07 58.1 11.3 39 238-276 60-101 (237)
408 PRK02496 adk adenylate kinase; 96.8 0.001 2.2E-08 62.3 3.8 30 244-273 3-32 (184)
409 PHA02530 pseT polynucleotide k 96.8 0.0033 7.1E-08 63.4 7.8 35 243-278 3-37 (300)
410 PF13238 AAA_18: AAA domain; P 96.8 0.0009 2E-08 57.9 3.2 22 245-266 1-22 (129)
411 TIGR01351 adk adenylate kinase 96.8 0.001 2.2E-08 63.7 3.9 34 245-280 2-35 (210)
412 COG4178 ABC-type uncharacteriz 96.8 0.0043 9.4E-08 68.0 9.0 28 239-266 416-443 (604)
413 PLN02200 adenylate kinase fami 96.8 0.0013 2.9E-08 64.3 4.7 39 241-281 42-80 (234)
414 PF13245 AAA_19: Part of AAA d 96.8 0.002 4.3E-08 51.8 4.9 33 243-275 11-50 (76)
415 PTZ00035 Rad51 protein; Provis 96.8 0.009 1.9E-07 61.7 10.9 40 238-277 114-162 (337)
416 PRK13808 adenylate kinase; Pro 96.8 0.0069 1.5E-07 62.2 9.9 35 244-280 2-36 (333)
417 PRK00279 adk adenylate kinase; 96.8 0.0012 2.6E-08 63.5 4.0 34 244-279 2-35 (215)
418 smart00487 DEXDc DEAD-like hel 96.8 0.014 3E-07 53.4 11.1 33 243-275 25-62 (201)
419 COG2804 PulE Type II secretory 96.8 0.003 6.4E-08 67.4 7.2 93 206-311 235-337 (500)
420 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0077 1.7E-07 61.6 10.1 40 238-277 92-140 (316)
421 PRK14527 adenylate kinase; Pro 96.8 0.0011 2.4E-08 62.5 3.6 37 241-279 5-41 (191)
422 TIGR02533 type_II_gspE general 96.8 0.0043 9.4E-08 67.1 8.5 94 205-311 218-321 (486)
423 cd03115 SRP The signal recogni 96.8 0.0059 1.3E-07 56.4 8.3 33 244-276 2-37 (173)
424 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.01 2.3E-07 53.9 9.8 74 239-312 22-109 (157)
425 cd03247 ABCC_cytochrome_bd The 96.8 0.013 2.9E-07 54.4 10.7 28 239-266 25-52 (178)
426 PRK04040 adenylate kinase; Pro 96.8 0.0016 3.4E-08 61.6 4.5 30 242-271 2-33 (188)
427 PF08303 tRNA_lig_kinase: tRNA 96.8 0.03 6.6E-07 51.5 12.6 132 248-393 5-146 (168)
428 TIGR02655 circ_KaiC circadian 96.8 0.017 3.7E-07 62.6 13.0 40 237-276 16-59 (484)
429 PF13479 AAA_24: AAA domain 96.8 0.0085 1.8E-07 57.7 9.6 67 242-313 3-80 (213)
430 PRK10436 hypothetical protein; 96.7 0.004 8.7E-08 66.9 8.0 94 205-311 194-297 (462)
431 PF06414 Zeta_toxin: Zeta toxi 96.7 0.0048 1E-07 58.6 7.7 42 240-281 13-55 (199)
432 PRK14526 adenylate kinase; Pro 96.7 0.0046 1E-07 59.6 7.5 34 244-279 2-35 (211)
433 PRK09302 circadian clock prote 96.7 0.021 4.6E-07 62.2 13.6 78 238-315 27-144 (509)
434 cd03228 ABCC_MRP_Like The MRP 96.7 0.0066 1.4E-07 56.2 8.2 28 239-266 25-52 (171)
435 KOG0058 Peptide exporter, ABC 96.7 0.0071 1.5E-07 66.9 9.6 28 239-266 491-518 (716)
436 PRK00889 adenylylsulfate kinas 96.7 0.0075 1.6E-07 55.9 8.6 38 241-278 3-43 (175)
437 cd02019 NK Nucleoside/nucleoti 96.7 0.0025 5.5E-08 50.0 4.6 29 245-273 2-31 (69)
438 TIGR01448 recD_rel helicase, p 96.7 0.006 1.3E-07 69.2 9.4 100 243-359 339-457 (720)
439 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0047 1E-07 55.7 7.0 72 239-312 23-99 (144)
440 PF00625 Guanylate_kin: Guanyl 96.7 0.0044 9.6E-08 58.0 7.1 29 242-270 2-30 (183)
441 COG2805 PilT Tfp pilus assembl 96.7 0.0029 6.2E-08 63.4 5.8 68 244-311 127-208 (353)
442 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.029 6.3E-07 51.6 12.1 29 244-272 4-35 (159)
443 PF09848 DUF2075: Uncharacteri 96.7 0.0032 6.9E-08 65.3 6.5 24 243-266 2-25 (352)
444 PF13481 AAA_25: AAA domain; P 96.7 0.013 2.9E-07 54.7 10.2 78 239-316 29-156 (193)
445 COG0324 MiaA tRNA delta(2)-iso 96.7 0.0017 3.6E-08 65.8 4.2 38 242-279 3-40 (308)
446 COG1936 Predicted nucleotide k 96.7 0.0013 2.8E-08 60.8 3.0 30 244-274 2-31 (180)
447 PLN03186 DNA repair protein RA 96.7 0.011 2.4E-07 61.1 10.2 40 238-277 119-167 (342)
448 PRK12726 flagellar biosynthesi 96.7 0.047 1E-06 57.1 14.7 61 214-276 180-243 (407)
449 cd03227 ABC_Class2 ABC-type Cl 96.6 0.013 2.8E-07 53.8 9.6 25 242-266 21-45 (162)
450 PRK14737 gmk guanylate kinase; 96.6 0.0025 5.4E-08 60.2 4.9 26 241-266 3-28 (186)
451 TIGR00150 HI0065_YjeE ATPase, 96.6 0.002 4.4E-08 57.5 4.0 30 240-269 20-49 (133)
452 PF00406 ADK: Adenylate kinase 96.6 0.0014 3.1E-08 59.3 3.1 34 247-282 1-34 (151)
453 cd03238 ABC_UvrA The excision 96.6 0.015 3.3E-07 54.4 10.1 27 239-265 18-44 (176)
454 PRK13851 type IV secretion sys 96.6 0.0019 4.2E-08 66.7 4.4 70 241-310 161-245 (344)
455 PRK04182 cytidylate kinase; Pr 96.6 0.0019 4.2E-08 59.6 4.0 29 244-272 2-30 (180)
456 TIGR00767 rho transcription te 96.6 0.0068 1.5E-07 63.5 8.3 29 239-267 165-193 (415)
457 PRK01184 hypothetical protein; 96.6 0.0019 4.1E-08 60.3 3.9 29 244-273 3-31 (184)
458 PF13086 AAA_11: AAA domain; P 96.6 0.0027 5.8E-08 60.5 4.8 22 245-266 20-41 (236)
459 PRK14529 adenylate kinase; Pro 96.6 0.0057 1.2E-07 59.4 7.1 36 244-281 2-37 (223)
460 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.6 0.014 3.1E-07 55.4 9.7 34 243-276 39-79 (205)
461 PRK13894 conjugal transfer ATP 96.6 0.003 6.6E-08 64.7 5.3 70 241-310 147-228 (319)
462 PF01583 APS_kinase: Adenylyls 96.6 0.0029 6.2E-08 58.0 4.6 37 243-279 3-42 (156)
463 cd03282 ABC_MSH4_euk MutS4 hom 96.6 0.024 5.2E-07 54.3 11.1 23 242-264 29-51 (204)
464 PLN02840 tRNA dimethylallyltra 96.6 0.0042 9.2E-08 65.5 6.4 36 243-278 22-57 (421)
465 TIGR02173 cyt_kin_arch cytidyl 96.5 0.0023 5E-08 58.6 3.9 29 244-272 2-30 (171)
466 PRK05541 adenylylsulfate kinas 96.5 0.003 6.5E-08 58.6 4.7 28 240-267 5-32 (176)
467 COG1116 TauB ABC-type nitrate/ 96.5 0.0064 1.4E-07 59.5 7.1 28 239-266 26-53 (248)
468 PRK09519 recA DNA recombinatio 96.5 0.017 3.6E-07 65.5 11.3 78 238-315 56-152 (790)
469 TIGR01526 nadR_NMN_Atrans nico 96.5 0.0064 1.4E-07 62.5 7.4 37 243-279 163-199 (325)
470 TIGR02538 type_IV_pilB type IV 96.5 0.0061 1.3E-07 67.3 7.7 93 206-311 293-395 (564)
471 PLN02459 probable adenylate ki 96.5 0.0086 1.9E-07 59.4 7.9 35 243-279 30-64 (261)
472 PF13521 AAA_28: AAA domain; P 96.5 0.0022 4.9E-08 58.7 3.6 27 245-272 2-28 (163)
473 PRK08233 hypothetical protein; 96.5 0.0029 6.3E-08 58.5 4.4 33 243-275 4-37 (182)
474 PF10236 DAP3: Mitochondrial r 96.5 0.037 8E-07 56.5 12.7 117 301-417 156-307 (309)
475 TIGR01425 SRP54_euk signal rec 96.5 0.043 9.3E-07 58.3 13.5 72 241-312 99-193 (429)
476 PRK10263 DNA translocase FtsK; 96.5 0.027 5.8E-07 66.4 12.9 74 304-388 1143-1218(1355)
477 PRK08099 bifunctional DNA-bind 96.5 0.0066 1.4E-07 64.1 7.2 30 243-272 220-249 (399)
478 COG0529 CysC Adenylylsulfate k 96.4 0.01 2.2E-07 55.2 7.4 40 240-279 21-63 (197)
479 cd03287 ABC_MSH3_euk MutS3 hom 96.4 0.026 5.7E-07 54.8 10.7 24 241-264 30-53 (222)
480 cd01125 repA Hexameric Replica 96.4 0.065 1.4E-06 52.3 13.5 21 245-265 4-24 (239)
481 TIGR03881 KaiC_arch_4 KaiC dom 96.4 0.0069 1.5E-07 58.6 6.6 40 238-277 16-58 (229)
482 COG5245 DYN1 Dynein, heavy cha 96.4 0.004 8.6E-08 73.0 5.5 141 239-392 1491-1660(3164)
483 PF08298 AAA_PrkA: PrkA AAA do 96.4 0.0089 1.9E-07 61.5 7.5 61 208-274 59-121 (358)
484 cd03223 ABCD_peroxisomal_ALDP 96.4 0.021 4.6E-07 52.6 9.4 28 239-266 24-51 (166)
485 cd03246 ABCC_Protease_Secretio 96.4 0.035 7.6E-07 51.4 10.9 28 239-266 25-52 (173)
486 PF02562 PhoH: PhoH-like prote 96.4 0.0031 6.7E-08 60.4 3.8 24 243-266 20-43 (205)
487 PRK09302 circadian clock prote 96.4 0.047 1E-06 59.5 13.4 78 238-315 269-377 (509)
488 PRK12727 flagellar biosynthesi 96.4 0.052 1.1E-06 59.0 13.3 28 239-266 347-374 (559)
489 PRK10078 ribose 1,5-bisphospho 96.3 0.0035 7.6E-08 58.8 3.9 29 243-271 3-31 (186)
490 PF08423 Rad51: Rad51; InterP 96.3 0.026 5.5E-07 56.1 10.2 114 239-353 35-184 (256)
491 PF05970 PIF1: PIF1-like helic 96.3 0.02 4.4E-07 59.7 9.9 27 241-267 21-47 (364)
492 COG0467 RAD55 RecA-superfamily 96.3 0.0058 1.3E-07 60.5 5.6 40 238-277 19-61 (260)
493 cd03214 ABC_Iron-Siderophores_ 96.3 0.038 8.2E-07 51.5 10.6 28 239-266 22-49 (180)
494 TIGR00174 miaA tRNA isopenteny 96.3 0.0035 7.7E-08 63.1 3.8 34 245-278 2-35 (287)
495 PRK00091 miaA tRNA delta(2)-is 96.3 0.0031 6.7E-08 64.2 3.3 35 243-277 5-39 (307)
496 PF03266 NTPase_1: NTPase; In 96.3 0.004 8.8E-08 57.8 3.8 23 244-266 1-23 (168)
497 TIGR00152 dephospho-CoA kinase 96.2 0.012 2.6E-07 55.3 7.0 35 245-281 2-36 (188)
498 PRK05480 uridine/cytidine kina 96.2 0.007 1.5E-07 57.8 5.4 38 241-278 5-43 (209)
499 TIGR02768 TraA_Ti Ti-type conj 96.2 0.016 3.4E-07 66.1 9.1 71 243-313 369-451 (744)
500 COG0194 Gmk Guanylate kinase [ 96.2 0.0072 1.6E-07 56.7 5.2 25 242-266 4-28 (191)
No 1
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-57 Score=447.35 Aligned_cols=306 Identities=54% Similarity=0.884 Sum_probs=285.0
Q ss_pred CCCCCchHHHH-HHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHH
Q 011305 179 LLPNFDSAETR-ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTM 257 (489)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~ 257 (489)
..+.|...+.. .+++.+.+++....|+++|+||.|++++|+.|+|+|..|+..|++|.+...|+++||++||||||||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 34566666555 78889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011305 258 LAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (489)
Q Consensus 258 lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ 337 (489)
||+|+|.+++..|+.|+.+.+.++|.|++++.++-+|+.|+.++|++|||||||+|...|+.. .+|+.++++.++||.+
T Consensus 261 LAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQ 339 (491)
T KOG0738|consen 261 LAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQ 339 (491)
T ss_pred HHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998764 7899999999999999
Q ss_pred hcCCccCCCc---EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHH
Q 011305 338 MDGLTQSDEL---VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS 414 (489)
Q Consensus 338 ldg~~~~~~~---viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~ 414 (489)
|||+...... |+|+++||.||.+|+|++|||.+.|++|+|+.+.|..+++..++......+++++.|++.++||||+
T Consensus 340 mDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGa 419 (491)
T KOG0738|consen 340 MDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGA 419 (491)
T ss_pred hhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChH
Confidence 9999776665 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh-hhHHHHHHHHHHhchh
Q 011305 415 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADYGSE 486 (489)
Q Consensus 415 Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~-~~~~~y~~~~~~~g~~ 486 (489)
||..+|++|++.++||.++.+..+.......+... .|++++||+.|+++++||++ .++.+|++|.+.|||.
T Consensus 420 DI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 420 DITNVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998887766655554444445 68999999999999999998 6899999999999984
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-49 Score=417.72 Aligned_cols=270 Identities=43% Similarity=0.666 Sum_probs=252.2
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..|+...+.|+++|+||+|++++|++|++.+.+|+++|+.|.++ ..|++|||||||||||||++||++|++.+.+|+.
T Consensus 419 sa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 419 SALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred hhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence 455777888999999999999999999999999999999999997 6999999999999999999999999999999999
Q ss_pred EeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEE
Q 011305 273 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 352 (489)
Q Consensus 273 v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIa 352 (489)
|++.++.++|+|++++.++.+|++|+..+|||||+||||++...|++. .+.+..+++++||++|||+... .+|+||+
T Consensus 499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~--~~~v~~RVlsqLLtEmDG~e~~-k~V~ViA 575 (693)
T KOG0730|consen 499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS--SSGVTDRVLSQLLTEMDGLEAL-KNVLVIA 575 (693)
T ss_pred ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC--ccchHHHHHHHHHHHccccccc-CcEEEEe
Confidence 999999999999999999999999999999999999999999999743 3378899999999999999755 4599999
Q ss_pred EeCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 011305 353 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430 (489)
Q Consensus 353 tTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR 430 (489)
+||+|+.+|+|++| ||+..|++|+||.+.|.+||+.++++.+...++|+++||+.|+||||+||..+|++|+..++++
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRE 655 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHH
Q 011305 431 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNAD 482 (489)
Q Consensus 431 ~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~ 482 (489)
... ...|+.+||++|++..+||.+. +++.|++|.+.
T Consensus 656 ~i~----------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 656 SIE----------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred hcc----------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 554 1239999999999999999886 58999998764
No 3
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=8.3e-49 Score=372.97 Aligned_cols=300 Identities=30% Similarity=0.424 Sum_probs=257.7
Q ss_pred ccCcchHHHHHHHHhhhcCCccccCchhHHHhhhhhcCCCCCCCchHH-------------HHHHHHHhhhhh-hcCCCC
Q 011305 140 QNTSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAE-------------TRALAESLCRDI-IRGSPD 205 (489)
Q Consensus 140 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~ 205 (489)
.-..++.+|+.|++.||.+..+..++++| + +.++|+|.+-- +..+..+-.++. ....++
T Consensus 45 vv~dn~~~F~~YArdQW~Ge~v~eg~ylF---D----~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~~~~~~~e~~~~ 117 (368)
T COG1223 45 VVDDNPEVFNIYARDQWLGEVVREGDYLF---D----TRMFPDYAFKVIRVVPSGGGIITSTTIFVLETPREEDREIISD 117 (368)
T ss_pred eecCCHHHHHHHHHHhhcceeeecCceEe---e----cccccccceeEEEEeCCCCceecceEEEEecCcchhhhhhhcc
Confidence 44559999999999999999999998887 4 56778877621 111111111222 224578
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccc
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGD 285 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~ 285 (489)
++|+|++|++++|++++- +..++.+|+.|..|. |++||||||||||||++|+++|++.+.|++.+++.++.++++|+
T Consensus 118 it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRL-IMEYLENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred ccHhhhhchHHHHHHHHH-HHHHhhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence 899999999999999985 445688999998764 48999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHH
Q 011305 286 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAML 365 (489)
Q Consensus 286 ~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~ 365 (489)
..+.++.+++.|+..+|||+||||+|+++.+|..+...++++ +++++||++|||+. .+.+|+.|++||+|+.||++++
T Consensus 195 gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVs-EiVNALLTelDgi~-eneGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 195 GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVS-EIVNALLTELDGIK-ENEGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHH-HHHHHHHHhccCcc-cCCceEEEeecCChhhcCHHHH
Confidence 999999999999999999999999999999998877776665 48899999999997 5566999999999999999999
Q ss_pred hhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHH-HHHHHHhHHHHHHHHHhhhhhccCCC
Q 011305 366 RRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL-VSKEAAMQPLRRLMVLLEGRQEVAPD 444 (489)
Q Consensus 366 rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~-l~~~A~~~a~rR~~~~le~~~~~~~~ 444 (489)
+||...|+|.+|+.++|..|++.++++.++..+.+++.+++.|.|+||+||.. +++.|.+.|+.. ++.
T Consensus 273 sRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e------d~e----- 341 (368)
T COG1223 273 SRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE------DRE----- 341 (368)
T ss_pred hhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh------chh-----
Confidence 99999999999999999999999999999999999999999999999999987 777777776553 222
Q ss_pred CCCCCCCCCCHHHHHHHHhhhCCCh
Q 011305 445 DELPQIGPIRPEDVEIALKNTRPSA 469 (489)
Q Consensus 445 ~~~~~~~~It~eDf~~AL~~~~ps~ 469 (489)
.|+.+||+.|+++.++.-
T Consensus 342 -------~v~~edie~al~k~r~~r 359 (368)
T COG1223 342 -------KVEREDIEKALKKERKRR 359 (368)
T ss_pred -------hhhHHHHHHHHHhhcccc
Confidence 389999999999877653
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-48 Score=385.22 Aligned_cols=249 Identities=41% Similarity=0.657 Sum_probs=229.5
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..+.|+++++||+|+++.+++++|.+..|+.+|++|... ..||+|||||||||||||+||||+|++.+..|+.|.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 456799999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+.+|+|+..+.++.+|..|+.++||||||||||+++.+|.+.. +.....++..-+||++|||+...+ +|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~-nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG-NVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC-CeEEEEecCCc
Confidence 9999999999999999999999999999999999999986432 222334567789999999997654 58899999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.|||||+| ||++.|+||+||.+.|.+||+.|.+++....++|++.||+.++|+||+||+++|.+|.+.|+|.-
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~---- 376 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER---- 376 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999852
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
+ ..+|++||.+|..++..
T Consensus 377 --R------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 --R------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred --c------------CeecHHHHHHHHHHHHh
Confidence 1 13999999999988754
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-48 Score=403.52 Aligned_cols=286 Identities=33% Similarity=0.590 Sum_probs=256.6
Q ss_pred HHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 192 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
..+..|+.....|+++|+||+|+++++.+|..++.+|.++|+.|..+ ...|.|||||||||||||.+|+|+|++.+.+|
T Consensus 494 QPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 494 QPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred CcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCce
Confidence 33456777778899999999999999999999999999999999987 77889999999999999999999999999999
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
+.|.+.+|.++|+|++++.++.+|..|+..+|||||+||+|+|.+.|+... ...+.+++++||.+|||+..+.+ |.|
T Consensus 574 isVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~g-V~v 650 (802)
T KOG0733|consen 574 ISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRG-VYV 650 (802)
T ss_pred EeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccc-eEE
Confidence 999999999999999999999999999999999999999999999998654 56678999999999999976554 999
Q ss_pred EEEeCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcC--CCCCCCCCCHHHHHHHhc--CCcHHHHHHHHHHHH
Q 011305 351 LAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP--SQTGEESLPYDLLVERTE--GYSGSDIRLVSKEAA 424 (489)
Q Consensus 351 IatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~--~~~~~~~~dl~~La~~t~--G~sg~Di~~l~~~A~ 424 (489)
|++||+|+.+|+|++| ||++.+++++|+.++|..||+.+.+ +.++..++|++.||+.+. ||||+||..||++|+
T Consensus 651 iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAs 730 (802)
T KOG0733|consen 651 IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREAS 730 (802)
T ss_pred EeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999 667788999999999876 999999999999999
Q ss_pred hHHHHHHHHHhhhhhccCCCCCCCC---CCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhch
Q 011305 425 MQPLRRLMVLLEGRQEVAPDDELPQ---IGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 485 (489)
Q Consensus 425 ~~a~rR~~~~le~~~~~~~~~~~~~---~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~ 485 (489)
..++++.+...+.... +... ...+|..||++|+++++||+++ +...|+..++.||.
T Consensus 731 i~AL~~~~~~~~~~~~-----~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 731 ILALRESLFEIDSSED-----DVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSL 790 (802)
T ss_pred HHHHHHHHhhccccCc-----ccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcc
Confidence 9999987763332211 1111 1138899999999999999986 67999999999984
No 6
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-48 Score=375.28 Aligned_cols=298 Identities=49% Similarity=0.841 Sum_probs=267.0
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 186 AETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
.+..++...++..++.+.|+++|+|+.|++.+|+.|++.+..|.+.|++|.+...|++++||||||||||+.||+|+|.+
T Consensus 110 pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 110 PEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred hhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh
Confidence 34566777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 266 CKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 266 l~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
.+..|+.|+.++|+++|.|++++.++.+|+.|+.++|+||||||||++++.|+.. +.+.++++..+||.+|+|+-..+
T Consensus 190 AnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 190 ANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred cCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhccccCC
Confidence 9999999999999999999999999999999999999999999999999988754 56778999999999999998888
Q ss_pred CcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 346 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 346 ~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
+.|+|+++||-||.||.+++|||++.|++|+|+...|..+++.++...+.. .+.|+..|+++|+||||+||.-+++.|.
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 999999999999999999999999999999999999999999999887765 4668999999999999999999999999
Q ss_pred hHHHHHHHHHhh-----h-------hhcc---C--------------CCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHH
Q 011305 425 MQPLRRLMVLLE-----G-------RQEV---A--------------PDDELPQIGPIRPEDVEIALKNTRPSAHL-HAH 474 (489)
Q Consensus 425 ~~a~rR~~~~le-----~-------~~~~---~--------------~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~ 474 (489)
+.++|+...... + .... . +.+.+ -..+||+.||.++|++.+|.+.. ++.
T Consensus 348 mePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl-~eP~vt~~D~~k~l~~tkPTvn~~Dl~ 426 (439)
T KOG0739|consen 348 MEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKL-LEPPVTMRDFLKSLSRTKPTVNEDDLL 426 (439)
T ss_pred hhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhc-cCCCccHHHHHHHHhhcCCCCCHHHHH
Confidence 999998643211 0 0000 0 11111 13469999999999999999875 699
Q ss_pred HHHHHHHHhchh
Q 011305 475 RYEKFNADYGSE 486 (489)
Q Consensus 475 ~y~~~~~~~g~~ 486 (489)
+.++|+++||+|
T Consensus 427 k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 427 KHEKFTEDFGQE 438 (439)
T ss_pred HHHHHHHhhccC
Confidence 999999999986
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-47 Score=404.14 Aligned_cols=284 Identities=32% Similarity=0.552 Sum_probs=259.3
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
..+.|+++|+||+|++++|..+.+.+..|++||++|...+.+..|||||||||||||.+|||+|.++...|+.|.+.++.
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 34679999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-CCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-~~~~viVIatTn~p~ 358 (489)
+.|+|+++++++++|++|+..+|||||+||+|+++++|+..+..+.+..+++++||.+|||++. ....|+||++||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999998888899999999999999999976 667899999999999
Q ss_pred cccHHHHh--hcccccccCCC-CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhc-CCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 359 ELDAAMLR--RLEKRILVPLP-DTEARRAMFESLLPSQTGEESLPYDLLVERTE-GYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~P-d~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~-G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
.||++++| ||++.+++..+ |.+.+..+|+...++..++.++|+.++|+.+. .|||+|+..+|..|++.|++|....
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999998 66779999999999999999999999999985 8999999999999999999998876
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhc
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 484 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g 484 (489)
.+....-..+.+ +...-|++|||.+++++.+||.+. +++.|+.....|.
T Consensus 903 ie~g~~~~~e~~-~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 903 IESGTISEEEQE-SSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred hhhccccccccC-CceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 664422112222 222349999999999999999875 7999999888774
No 8
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-43 Score=353.29 Aligned_cols=285 Identities=40% Similarity=0.686 Sum_probs=253.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s 276 (489)
+....-.++|+||.|++.+++++++.+..|+++|++|... +.|++||||+||||||||++|+++|++.+.+|+.|+.+
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 3334456889999999999999999999999999999653 88999999999999999999999999999999999999
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC-CcEEEEEEeC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD-ELVFVLAATN 355 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~-~~viVIatTn 355 (489)
.+.++|.|+.++.++.+|..|...+|+||||||+|++...| ...+|+..+.+.++|...+||+.... ..|+|+++||
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R--~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR--RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc--ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 99999999999999999999999999999999999999998 36789999999999999999996554 4799999999
Q ss_pred CCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 356 LPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 356 ~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+|..+|+|++||+...+++++|+..+|.+||+-+++....+.++|+..+|+.|+||||+||.++|..|++.++|..+..-
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887652
Q ss_pred ---hhhhc-cCCCCCCC------CCCCCCHHHHHHHHhhhCCChhh---hHHHHHHHHHHhch
Q 011305 436 ---EGRQE-VAPDDELP------QIGPIRPEDVEIALKNTRPSAHL---HAHRYEKFNADYGS 485 (489)
Q Consensus 436 ---e~~~~-~~~~~~~~------~~~~It~eDf~~AL~~~~ps~~~---~~~~y~~~~~~~g~ 485 (489)
.+... ..+....+ ..++++++||.++++++-+|... .....+.|++.||.
T Consensus 320 ~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 320 TGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred ccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 11111 11111111 16899999999999999988553 36889999999986
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-44 Score=372.18 Aligned_cols=283 Identities=35% Similarity=0.531 Sum_probs=248.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
.++++|++|+|++....+|.+++.. +.+|+.|..+ +.|++|||||||||||||+||+++|.++++||+.|++.++++.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 4578999999999999999998877 9999998876 8999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC---CCcEEEEEEeCCCC
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS---DELVFVLAATNLPW 358 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~---~~~viVIatTn~p~ 358 (489)
+.|+++++++.+|+.|....|||+||||||++.++|... ..+-.++++.+||+.||++... +..|+||++||+|+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999999864 3455689999999999999654 56799999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.||++|+| ||++.|.+..|+..+|.+||+..++...+..++|+..||+.|.||.|+|+..||.+|+..+++|.+...+
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999877433
Q ss_pred hhhccC-----------------------------------------CCC---CCCCCCCCCHHHHHHHHhhhCCChhhh
Q 011305 437 GRQEVA-----------------------------------------PDD---ELPQIGPIRPEDVEIALKNTRPSAHLH 472 (489)
Q Consensus 437 ~~~~~~-----------------------------------------~~~---~~~~~~~It~eDf~~AL~~~~ps~~~~ 472 (489)
.-.... ++. +....-.|+.+||..|+..+|||+..+
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 100000 000 001122489999999999999999876
Q ss_pred ---HHHHHHHHHHhchhhc
Q 011305 473 ---AHRYEKFNADYGSEIL 488 (489)
Q Consensus 473 ---~~~y~~~~~~~g~~~~ 488 (489)
-..-+.|.+..+.+.+
T Consensus 501 GF~tVPdVtW~dIGaL~~v 519 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALEEV 519 (802)
T ss_pred cceecCCCChhhcccHHHH
Confidence 3667788888887643
No 10
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-41 Score=345.80 Aligned_cols=240 Identities=35% Similarity=0.569 Sum_probs=219.6
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
.+++|+|+.|++++|++|+|++ .+++.|+.|.++ ..-|+||||.||||||||+||||+|.+.++||++.+++++...+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 4788999999999999999955 568899999987 77889999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~ 362 (489)
+|..++.++.+|..|+..+||||||||||++.++|...... ..++.+++||.+|||+.. +.+|+||++||.|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~--y~kqTlNQLLvEmDGF~q-NeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH--YAKQTLNQLLVEMDGFKQ-NEGIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH--HHHHHHHHHHHHhcCcCc-CCceEEEeccCChhhhhH
Confidence 99999999999999999999999999999999998765432 678999999999999975 456999999999999999
Q ss_pred HHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 363 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 363 al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
||.| ||+++|.+|.||...|.+||+.|+.+.....++|++-||+-|.||+|+||.++++.|+..|+.. +.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------ga-- 526 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------GA-- 526 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc------Cc--
Confidence 9999 9999999999999999999999999999999999999999999999999999999999876542 11
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 441 VAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 441 ~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
..+++.|++-|-.++
T Consensus 527 ----------~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 527 ----------EMVTMKHLEFAKDRI 541 (752)
T ss_pred ----------ccccHHHHhhhhhhe
Confidence 138999998887665
No 11
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6e-40 Score=367.92 Aligned_cols=287 Identities=41% Similarity=0.655 Sum_probs=249.3
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
++.....|.++|++|+|++.+|+.|++.+.+++.+++.+... ..+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 441 ~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~ 520 (733)
T TIGR01243 441 REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520 (733)
T ss_pred chhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 344455688999999999999999999999999999998875 6788999999999999999999999999999999999
Q ss_pred cchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 011305 276 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn 355 (489)
+++.++|+|++++.++.+|..|+...|+||||||+|.+++.++... .....++++++|+..|+++... .+++||+|||
T Consensus 521 ~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~-~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aTn 598 (733)
T TIGR01243 521 PEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF-DTSVTDRIVNQLLTEMDGIQEL-SNVVVIAATN 598 (733)
T ss_pred HHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC-CccHHHHHHHHHHHHhhcccCC-CCEEEEEeCC
Confidence 9999999999999999999999999999999999999998876432 2345678999999999998654 4589999999
Q ss_pred CCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 356 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 356 ~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
+|+.+|++++| ||+..+++|+|+.++|.+||+.+.++.+...+.+++.+|+.|+||||+||..+|++|+..++++...
T Consensus 599 ~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 599 RPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred ChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 9999999999999999999999999888888899999999999999999999999999999998654
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhch
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 485 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~ 485 (489)
..................+|+++||.+|+++++||.++ ++..|++|.+.||.
T Consensus 679 ~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 679 SPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred hccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 32211000000001122469999999999999999886 57999999999973
No 12
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-41 Score=343.48 Aligned_cols=289 Identities=51% Similarity=0.803 Sum_probs=258.7
Q ss_pred HHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 192 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
...+.+++....+++.|+|+.|++.+|+.+.+.+.+|..+++.|.+...+.+++||.||||+|||+|+++||.|++..|+
T Consensus 136 ~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff 215 (428)
T KOG0740|consen 136 IEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFF 215 (428)
T ss_pred hHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEe
Confidence 44566788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-CCCcEEE
Q 011305 272 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFV 350 (489)
Q Consensus 272 ~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-~~~~viV 350 (489)
.++++.+.++|+|+.++.++.+|..|+..+|+|+||||+|.++.+|. ..+++.++++..+++..+++... .+++|+|
T Consensus 216 ~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs--~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 216 NISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS--DNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred eccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC--CcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999984 45677788999999999998854 4568999
Q ss_pred EEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011305 351 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 351 IatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~r 429 (489)
|+|||.|+.+|.+++|||..++++|+|+.+.|..+|+.++.+.+.. .+.+++.+++.|+||+++||..+|++|++...+
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 294 IGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred EecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 9999999999999999999999999999999999999999888443 457899999999999999999999999999988
Q ss_pred HHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhchhh
Q 011305 430 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 487 (489)
Q Consensus 430 R~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~~~ 487 (489)
..... .....+ .....++++..||+.+++.++|+.+. .++.|.+|.+.||+..
T Consensus 374 ~~~~~-~~~~~~----~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 374 ELGGT-TDLEFI----DADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSSE 427 (428)
T ss_pred hcccc-hhhhhc----chhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcccc
Confidence 75542 011111 12334789999999999999999886 5899999999999863
No 13
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=335.62 Aligned_cols=257 Identities=46% Similarity=0.725 Sum_probs=234.0
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcc-cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~-~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s 276 (489)
++....+.++|++++|++.+|+.+++.+.+++.+++.|.. ...+++++|||||||||||++|+++|++++.+|+.++.+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 4555678999999999999999999999999999999887 467888999999999999999999999999999999999
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
++.++|+|+++++++.+|..|+..+||||||||+|++++.++.... ....+++++++.+|+++....+ |+||++||+
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~--~~~~r~~~~lL~~~d~~e~~~~-v~vi~aTN~ 387 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED--GSGRRVVGQLLTELDGIEKAEG-VLVIAATNR 387 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc--hHHHHHHHHHHHHhcCCCccCc-eEEEecCCC
Confidence 9999999999999999999999999999999999999999875432 2236899999999999976554 889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCC--CCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~--~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
|+.+|++++| ||+..+++|+||.++|.+|++.++..... ..+.++..+++.|+||+|+||..+|++|++.+.++..
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999986554 4678999999999999999999999999999988754
Q ss_pred HHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhhHHHHHHH
Q 011305 433 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF 479 (489)
Q Consensus 433 ~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~~~~y~~~ 479 (489)
...+|.+||..|+++.+||+. |++|
T Consensus 468 -----------------~~~~~~~~~~~a~~~~~p~~~-----~~~~ 492 (494)
T COG0464 468 -----------------RREVTLDDFLDALKKIKPSVT-----YEEW 492 (494)
T ss_pred -----------------cCCccHHHHHHHHHhcCCCCC-----hhhc
Confidence 134999999999999999987 8888
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-37 Score=294.40 Aligned_cols=254 Identities=37% Similarity=0.583 Sum_probs=229.0
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
+-.++++.|+.+++-+.|++...+++++.+..|.++|++|..+ .+.|+|+|||||||||||.+|+++|....+.|+.|+
T Consensus 134 sLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvs 213 (404)
T KOG0728|consen 134 SLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 213 (404)
T ss_pred HHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEec
Confidence 3446678899999999999999999999999999999999987 788899999999999999999999999999999999
Q ss_pred ccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 275 ~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
+++++.+|.|+..+.++++|-.|+..+|+|||+||||++...|.+++.. ....++..-+||+++||+.... ++-||.+
T Consensus 214 gselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk-nikvima 292 (404)
T KOG0728|consen 214 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK-NIKVIMA 292 (404)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc-ceEEEEe
Confidence 9999999999999999999999999999999999999999987643322 2233456678899999997544 4889999
Q ss_pred eCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 354 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 354 Tn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
||+.+-||++++| |+++.|+||+|+.+.|.+||+.+.++.++...+++..+|+...|.||+++..+|.+|.+.++|.-
T Consensus 293 tnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer 372 (404)
T KOG0728|consen 293 TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER 372 (404)
T ss_pred ccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999998841
Q ss_pred HHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 432 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 432 ~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
+ ..+|.|||+-|+.++-.-
T Consensus 373 ------r------------vhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 373 ------R------------VHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred ------h------------ccccHHHHHHHHHHHHhc
Confidence 1 139999999999877543
No 15
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-37 Score=335.57 Aligned_cols=246 Identities=38% Similarity=0.595 Sum_probs=221.7
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
....++|+|+.|++++|++|.|++ .++++|+.|..+ ...|+|+||+||||||||+||+|+|.|.++||+.+++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 345589999999999999999965 568899998887 788899999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcc--cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~--~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
.++|.....++.+|..|+.++|||+||||||++...|+. ....+...+..+++||.+|||+... ..|+|+++||+|+
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPD 461 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCcc
Confidence 999999999999999999999999999999999999852 2234445577899999999999766 6699999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
.||+|++| ||++.++++.|+...|.+|++.|++..... .+.++..+|.+|.||+|+||.++|++|+..++|+..
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~--- 538 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL--- 538 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc---
Confidence 99999999 999999999999999999999999998885 667888899999999999999999999999988622
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
..|+.+||+.|++++.-
T Consensus 539 ---------------~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 539 ---------------REIGTKDLEYAIERVIA 555 (774)
T ss_pred ---------------CccchhhHHHHHHHHhc
Confidence 24999999999995543
No 16
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-37 Score=325.46 Aligned_cols=236 Identities=35% Similarity=0.624 Sum_probs=218.2
Q ss_pred hhhhc-CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 197 RDIIR-GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 197 ~~~~~-~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
|.+.. ......|+||.|+.++|+.|.+.+.+|.+||..|... ++.+.|||||||||||||.||-++|..++..|+.|.
T Consensus 654 R~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvK 733 (952)
T KOG0735|consen 654 RGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVK 733 (952)
T ss_pred hhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEec
Confidence 44433 3345899999999999999999999999999999875 777789999999999999999999999999999999
Q ss_pred ccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 275 ~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
+.++.++|.|.++..++.+|..|+..+|||||+||+|+++++|+. .......+++++||++|||... -.+|.|+++|
T Consensus 734 GPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh--DsTGVTDRVVNQlLTelDG~Eg-l~GV~i~aaT 810 (952)
T KOG0735|consen 734 GPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH--DSTGVTDRVVNQLLTELDGAEG-LDGVYILAAT 810 (952)
T ss_pred CHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC--CCCCchHHHHHHHHHhhccccc-cceEEEEEec
Confidence 999999999999999999999999999999999999999999874 3456678999999999999987 4559999999
Q ss_pred CCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011305 355 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 355 n~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
.+|+.+|||++| |+++.++.+.|+..+|.+|++.+........++|++.+|.+|+||||+|+..++..|.+.++.+.+
T Consensus 811 sRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 811 SRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred CCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999989999999999999999999999999999999999999877
Q ss_pred HHh
Q 011305 433 VLL 435 (489)
Q Consensus 433 ~~l 435 (489)
...
T Consensus 891 ~~~ 893 (952)
T KOG0735|consen 891 KRE 893 (952)
T ss_pred Hhc
Confidence 643
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=8.5e-37 Score=318.17 Aligned_cols=251 Identities=39% Similarity=0.648 Sum_probs=223.5
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..+.|+++|+||+|++.+|+++++.+.+|+.+|+.|... ..+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 346799999999999999999999999999999998875 6788999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
..+|.|+.++.++.+|..|+..+|+||||||+|.+...+.... .......+++..++..++++... .+++||++||++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~-~~v~VI~aTN~~ 294 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT-TNVKVIMATNRA 294 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC-CCEEEEEecCCc
Confidence 9999999999999999999999999999999999987764322 11223456778899999987544 358899999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.+|++++| ||+..|+++.|+.++|..||+.++.+.....++++..++..|+||||+||..+|++|++.++++.
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~---- 370 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN---- 370 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999999888889999999999999999999999999999988752
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCCh
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 469 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~ 469 (489)
+ ..|+.+||.+|++++....
T Consensus 371 --~------------~~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 371 --R------------YVILPKDFEKGYKTVVRKT 390 (398)
T ss_pred --C------------CccCHHHHHHHHHHHHhcc
Confidence 1 2499999999999876543
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-37 Score=291.93 Aligned_cols=248 Identities=35% Similarity=0.583 Sum_probs=225.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+.+.|..+++||+|++..+++|.+.++.|+.+++.|.++ ..||+|+|+|||||||||++||+.|.+.+..|+.+-+..+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 345688899999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc--hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~--~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+..|+|+.++.++..|..|+..+|+||||||+|++..+|.... .+.+ ..+..-+||+++||++... .|-||++||+
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE-VQRTMLELLNQLDGFss~~-~vKviAATNR 319 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE-VQRTMLELLNQLDGFSSDD-RVKVIAATNR 319 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH-HHHHHHHHHHhhcCCCCcc-ceEEEeeccc
Confidence 9999999999999999999999999999999999999875432 2222 3455668889999997554 4889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
.+.|||+++| |.++.|+||.|+.+.|.+|++.+.++.....++++++||+.|++|+|++.+.+|-+|.+.++||-.
T Consensus 320 vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a-- 397 (424)
T KOG0652|consen 320 VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA-- 397 (424)
T ss_pred ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc--
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999998732
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
..|+.+||.+.+..++.
T Consensus 398 ----------------tev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 398 ----------------TEVTHEDFMEGILEVQA 414 (424)
T ss_pred ----------------ccccHHHHHHHHHHHHH
Confidence 13899999999887754
No 19
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-36 Score=289.11 Aligned_cols=247 Identities=38% Similarity=0.620 Sum_probs=223.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.+.|.+++.|++|++-.|+++++.+..|+.+.+++... ..||+|||+|||||||||+||+++|+.....|+.|.+++++
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 45689999999999999999999999999999998875 89999999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
.+|.|+..++++.+|+.|+.++|+||||||+|+++.+|-.. ........+++-+||++|||+... .++-||++||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~-~nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT-TNVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc-cceEEEEecCccc
Confidence 99999999999999999999999999999999999987532 222334567888999999999644 4588999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.+||+++| |.++.|+||+||..+++-++.....++.+..++|++.+..+-+..|++||..+|++|.+.++|...
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr---- 381 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR---- 381 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc----
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999988521
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
--+...||+++-+..-
T Consensus 382 --------------yvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 382 --------------YVVLQKDFEKAYKTVV 397 (408)
T ss_pred --------------eeeeHHHHHHHHHhhc
Confidence 1278999999887653
No 20
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-37 Score=296.59 Aligned_cols=247 Identities=36% Similarity=0.626 Sum_probs=223.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.++.|..++.|+.|+++..+++++.+..|+.||+++... ..||+||+|||+||||||.||+|+|+.....|+.+-++++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 345688899999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc--hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~--~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
..+|.|+..+.++++|+.|..++|+|+||||||++..+|-+.. .+.+. .+..-+||+++||+..+++ |-||.+||+
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEi-QrtmLELLNQldGFdsrgD-vKvimATnr 333 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREI-QRTMLELLNQLDGFDSRGD-VKVIMATNR 333 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHH-HHHHHHHHHhccCccccCC-eEEEEeccc
Confidence 9999999999999999999999999999999999999885432 23333 3445588999999987665 889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
.+.|||++.| |+++.|.||.||...+..|+..+...+.+..+++++.+...-+.+||+||.++|.+|.+.|+|.-..
T Consensus 334 ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm- 412 (440)
T KOG0726|consen 334 IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM- 412 (440)
T ss_pred ccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh-
Confidence 9999999999 9999999999999999999999999999999999999999889999999999999999999874221
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
.++++||.+|.+++-
T Consensus 413 -----------------~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 413 -----------------KVTMEDFKKAKEKVL 427 (440)
T ss_pred -----------------hccHHHHHHHHHHHH
Confidence 289999999987653
No 21
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=4.8e-36 Score=318.97 Aligned_cols=255 Identities=24% Similarity=0.343 Sum_probs=217.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
.++.+|++|+|++.+|+.+.+....+... ....+..+++|+||+||||||||++|+++|++++.+++.++++.+.++|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~~~--~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSFSKQ--ASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHhhHH--HHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 36778999999999999998755432211 1122357789999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~ 362 (489)
+|+++..++.+|..|+..+||||||||+|.++..++.. .+.....+++..++..|+. ...+++||+|||+++.+|+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~-~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK-GDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC-CCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999998764432 2344567888999998874 3456999999999999999
Q ss_pred HHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCC--CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 363 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE--ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 363 al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~--~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
+++| ||++.++++.|+.++|.+||+.++.+.... .+.+++.+++.|.||||+||+++|.+|+..+..+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~-------- 447 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE-------- 447 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc--------
Confidence 9998 999999999999999999999999886543 4678999999999999999999999998876542
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhhhCCChh---hhHHHHHHHHHH
Q 011305 439 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH---LHAHRYEKFNAD 482 (489)
Q Consensus 439 ~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~---~~~~~y~~~~~~ 482 (489)
.++++.+||..|++++.|++. ++++.+++|...
T Consensus 448 -----------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 448 -----------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred -----------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 135999999999999999853 468999999874
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=8.8e-36 Score=311.12 Aligned_cols=255 Identities=40% Similarity=0.604 Sum_probs=225.1
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.....|+++|++|+|+++.++.+++.+..++.+++.|... ..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 3456789999999999999999999999999999998876 678899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+...|.|+.++.++.+|..++...|+||||||+|.+...+...... .....+.+..++..+++.... ..+.||+|||+
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~-~~v~VI~aTn~ 279 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-GNVKIIAATNR 279 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC-CCEEEEEecCC
Confidence 9999999999999999999999999999999999998876543221 222345667788888877543 35889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
++.+|+++++ ||+..+++|.|+.++|.+||+.++.......+.++..++..|.||+|+||+.+|++|++.++++.
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~--- 356 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD--- 356 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999998 99999999999999999999999998888888999999999999999999999999999887751
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 472 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~ 472 (489)
...|+.+||.+|++.++++....
T Consensus 357 ---------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ---------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ---------------CCCcCHHHHHHHHHHHhcccccc
Confidence 12499999999999999986544
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-36 Score=287.66 Aligned_cols=249 Identities=35% Similarity=0.562 Sum_probs=224.3
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.+++.|+++++|+.|+.+.++.+++.+..|+.+|+.|-.+ ..||+|||+|||||||||.+||++|+..+.-|+.|-+++
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 3456799999999999999999999999999999999887 899999999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc--chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA--RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~--~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn 355 (489)
++.+|+|+.++.++++|+.|+..+.||||+||+|++.+.|-.. +.+.+ .++..-+|++++||+..++ ++-|+.+||
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdne-vqrtmleli~qldgfdprg-nikvlmatn 324 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNE-VQRTMLELINQLDGFDPRG-NIKVLMATN 324 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHH-HHHHHHHHHHhccCCCCCC-CeEEEeecC
Confidence 9999999999999999999999999999999999999987543 23333 3456678889999997654 488999999
Q ss_pred CCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 356 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 356 ~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
+|+.|||+++| |+++.++|.+||.+.|..|++.+.+.+....++.++-+|..+..-+|++|+.+|.+|.+.++|--.
T Consensus 325 rpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr- 403 (435)
T KOG0729|consen 325 RPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR- 403 (435)
T ss_pred CCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh-
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999999987321
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
+..|..||.+|+.++-.
T Consensus 404 -----------------k~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 404 -----------------KVATEKDFLDAVNKVVK 420 (435)
T ss_pred -----------------hhhhHHHHHHHHHHHHH
Confidence 12788999999987643
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=316.58 Aligned_cols=245 Identities=38% Similarity=0.576 Sum_probs=223.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.....++|.|+.|.+++|+++.|.+ .+++.|+.|..+ ..-|+|+||+||||||||+|||++|.+.++||+.+++++++
T Consensus 142 ~~~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV 220 (596)
T COG0465 142 EDQVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 220 (596)
T ss_pred ccccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh
Confidence 3357789999999999999999965 557788887765 67789999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
..++|..+..++.+|..|+.++|||+||||+|++...|+.+ +..++.-++.+++||.+|||+. .+..|+|+++||+|+
T Consensus 221 emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-~~~gviviaaTNRpd 299 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-GNEGVIVIAATNRPD 299 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC-CCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999988643 3455566789999999999997 456799999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
-+|+|++| ||++++.++.||...|.+|++.++++.+...++++..+|+.|.||+|+|+.+++++|+..++|+..
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~---- 375 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK---- 375 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC----
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999988632
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
..|++.||.+|..++
T Consensus 376 --------------~~i~~~~i~ea~drv 390 (596)
T COG0465 376 --------------KEITMRDIEEAIDRV 390 (596)
T ss_pred --------------eeEeccchHHHHHHH
Confidence 248999999999877
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.3e-34 Score=303.92 Aligned_cols=249 Identities=37% Similarity=0.584 Sum_probs=220.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..+.|.++|+||.|++..++++++.+..++.+|+.+..+ ..+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 456788999999999999999999999999999998876 6788999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
...|.|.....++.+|..|....|+||||||+|.+..++..... ......+.+..++..++++.... .+.||++||++
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~-~V~VI~ATNr~ 332 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG-DVKVIMATNRI 332 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC-CeEEEEecCCh
Confidence 99999999999999999999999999999999999987643221 11223455677888898875443 58899999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.+|++++| ||+..|+|+.|+.++|.+||+.++.+.....+++++.++..+.||+|+||..+|++|++.|+++-
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~---- 408 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER---- 408 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 999999987 99999999999999999999999999888888999999999999999999999999999988752
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
+ ..|+.+||.+|+.++..
T Consensus 409 --r------------~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 --R------------MKVTQADFRKAKEKVLY 426 (438)
T ss_pred --C------------CccCHHHHHHHHHHHHh
Confidence 1 13999999999998744
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.7e-34 Score=309.06 Aligned_cols=247 Identities=37% Similarity=0.574 Sum_probs=216.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
...+.++|+||+|++++|+++++.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 446789999999999999999997765 7788777654 67779999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
..+.|...+.++.+|..|+..+|+||||||+|.+...++... ........+++.|+..||++... ..++||+|||+|+
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~-~~v~vI~aTn~~~ 204 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN-TGVIVIAATNRPD 204 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC-CCeEEEEecCChh
Confidence 999999999999999999999999999999999998876432 22334567889999999988654 4588999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.+|++++| ||+..++++.|+.++|.+||+.++.......+.++..++..+.||+++||+.++++|+..+.++.
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~----- 279 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN----- 279 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999988777778889999999999999999999999988765531
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
..+|+.+||..|+.++..
T Consensus 280 -------------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 280 -------------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred -------------CCCCCHHHHHHHHHHHhc
Confidence 124999999999998754
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.2e-32 Score=285.55 Aligned_cols=247 Identities=40% Similarity=0.647 Sum_probs=215.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
....|.++|++|+|+++.++.+++.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 346689999999999999999999999999999988775 6778999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
...+.|.....++.+|..++...|+||||||+|.+...+...... .....+.+..++..++++... .++.||+|||++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~ 271 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRP 271 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCCh
Confidence 999999999999999999999999999999999998765432211 122344567778888876443 458899999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.+|+++++ ||+..++++.|+.++|.+||+.++.......+.++..+++.+.||+|+||..+|++|++.++++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~---- 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE---- 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999997 99999999999999999999999988887777899999999999999999999999999987751
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
+ ..|+.+||.+|+.++
T Consensus 348 --~------------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --R------------DYVTMDDFIKAVEKV 363 (364)
T ss_pred --C------------CccCHHHHHHHHHHh
Confidence 1 239999999999865
No 28
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-33 Score=294.86 Aligned_cols=257 Identities=34% Similarity=0.563 Sum_probs=235.3
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
+++. .++.|+......+++.+.+++.++..+... .++++++|+|||||||||.+++++|++.+..++.++++++.+++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 799999999999999999999999998765 78889999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCccc
Q 011305 283 RGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld 361 (489)
.|++++.++..|+.|...+ |++|||||+|.+.+++..... ..+++..+|+..||+... ...++|+++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998765332 578899999999999873 45588999999999999
Q ss_pred HHHHh-hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 362 AAMLR-RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 362 ~al~r-Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
++++| ||+..+.+..|+..+|.+|++.+.+.++...+.++..+|..+.||+|+|+..+|.+|+..+.++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999998899999999999999999999999999998886
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh---HHHHHHHHHHhchhhc
Q 011305 441 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSEIL 488 (489)
Q Consensus 441 ~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~---~~~y~~~~~~~g~~~~ 488 (489)
++++|..|+..++||+..+ ...-..|.++.|.|.+
T Consensus 405 -------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~l 442 (693)
T KOG0730|consen 405 -------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEEL 442 (693)
T ss_pred -------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHH
Confidence 5788999999999998764 2556779988888765
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=2.8e-32 Score=298.37 Aligned_cols=244 Identities=36% Similarity=0.580 Sum_probs=212.4
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..+.++|+|++|++++++.+.+.+.. ++.++.+... ...++++||+||||||||++|+++|.+++.|++.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34578999999999999999997654 6777776654 566789999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~ 359 (489)
.+.|.....++.+|..|+...||||||||+|.+...++.. ...+.....+++.|+..||++... ..++||++||+++.
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~ 333 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDI 333 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHh
Confidence 8888888899999999999999999999999998776432 122344567889999999988643 45889999999999
Q ss_pred ccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011305 360 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 437 (489)
Q Consensus 360 Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~ 437 (489)
+|++++| ||+..+.++.|+.++|.+||+.+++......+.++..+|..+.||+++||+.++++|+..+.++.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~------ 407 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK------ 407 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 9999998 99999999999999999999999988777778889999999999999999999999988776541
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 438 RQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 438 ~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
...|+.+||+.|+.++
T Consensus 408 ------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ------------KATITMKEIDTAIDRV 423 (638)
T ss_pred ------------CCCcCHHHHHHHHHHH
Confidence 1249999999999887
No 30
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=9.3e-32 Score=286.03 Aligned_cols=273 Identities=28% Similarity=0.488 Sum_probs=214.3
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCc------
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTT------ 269 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~------ 269 (489)
..+....|+++|++|+|++..++++++.+..++.+++.|... ..+++++|||||||||||++|+++|++++.+
T Consensus 170 ~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~ 249 (512)
T TIGR03689 170 DLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETG 249 (512)
T ss_pred cceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccC
Confidence 345567899999999999999999999999999999998875 7788999999999999999999999998654
Q ss_pred ----EEEEeccchhhhhccchHHHHHHHHHHHHhc----CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 270 ----FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 270 ----~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
|+.++.+++.++|.|++++.++.+|..++.. .|+||||||+|.++..++... .++..+.++++|+..||++
T Consensus 250 ~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 250 DKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGV 328 (512)
T ss_pred CceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhccc
Confidence 6677788899999999999999999988764 689999999999998775432 2334567889999999998
Q ss_pred ccCCCcEEEEEEeCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCC-CCC---------CCCCHHHHHHH--
Q 011305 342 TQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ-TGE---------ESLPYDLLVER-- 407 (489)
Q Consensus 342 ~~~~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-~~~---------~~~dl~~La~~-- 407 (489)
... .+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... +.. ...++..+++.
T Consensus 329 ~~~-~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 329 ESL-DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred ccC-CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 654 458899999999999999999 999999999999999999999998642 221 11122222222
Q ss_pred ---------------------------hcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHH
Q 011305 408 ---------------------------TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI 460 (489)
Q Consensus 408 ---------------------------t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~ 460 (489)
++.+||++|+++|.+|...++++.+.. ....|+.+|+..
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~--------------~~~~~~~~~l~~ 473 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG--------------GQVGLRIEHLLA 473 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc--------------CCcCcCHHHHHH
Confidence 345778888888888888777765421 113599999999
Q ss_pred HHhhhCCChhh--hHHHHHHHHHHhch
Q 011305 461 ALKNTRPSAHL--HAHRYEKFNADYGS 485 (489)
Q Consensus 461 AL~~~~ps~~~--~~~~y~~~~~~~g~ 485 (489)
|+..-.....+ --..=++|..+-|-
T Consensus 474 a~~~e~~~~~~~~~~~~~~~w~~~~~~ 500 (512)
T TIGR03689 474 AVLDEFRESEDLPNTTNPDDWARISGK 500 (512)
T ss_pred HHHHhhcccccCCCCCCHHHHhhhhCC
Confidence 99765433221 12334567776553
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.7e-32 Score=265.98 Aligned_cols=248 Identities=34% Similarity=0.564 Sum_probs=217.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
...+++|+.+.|......++++.+..|+.+|++|... ..+|++++||||||||||++|+++|..++++|+.+.++++.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 4467899999999999999999999999999999984 899999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~ 359 (489)
+|.|++.+.+++.|..|+...|||||+||||++.+.+.... .......+.+-.|+++|+++... +.|-+|+|||+|+.
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l-~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL-HRVKTIMATNRPDT 283 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc-ccccEEEecCCccc
Confidence 99999999999999999999999999999999999875332 22223344556677788877543 45889999999999
Q ss_pred ccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011305 360 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 437 (489)
Q Consensus 360 Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~ 437 (489)
|+++|+| |.++.++.|+|+...|..|++.+.........+|.+.+.+.++||.|+|++..|++|-+.+++...
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~----- 358 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER----- 358 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh-----
Confidence 9999999 999999999999999999999998887777888999999999999999999999999987766321
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 438 RQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 438 ~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
. .+-+|||.+++.++...
T Consensus 359 -~------------~vl~Ed~~k~vrk~~~~ 376 (388)
T KOG0651|consen 359 -D------------EVLHEDFMKLVRKQADA 376 (388)
T ss_pred -H------------HHhHHHHHHHHHHHHHH
Confidence 1 27799999998876543
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=1.9e-31 Score=299.34 Aligned_cols=280 Identities=39% Similarity=0.590 Sum_probs=234.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
.++++|++|+|++.+++.+++.+..++.+|+.+..+ ..+++++||+||||||||++|+++|++++.+++.++++++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 478899999999999999999999999999998876 6788999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCccc
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld 361 (489)
+.|..+..++.+|..+....|+||||||+|.+.+.++... .+..+++++.|+..|+++... ..++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~--~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT--GEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc--chHHHHHHHHHHHHhhccccC-CCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999998765432 233467889999999988544 4588999999999999
Q ss_pred HHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhh--
Q 011305 362 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG-- 437 (489)
Q Consensus 362 ~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~-- 437 (489)
+++++ ||+..+.++.|+.++|.+||+.+.+......+.+++.+++.+.||+++|+..+++.|+..+++|.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 99999999999999999999999988887778899999999999999999999999999999886542111
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhhH---HHHHHHHHHhchh
Q 011305 438 RQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYGSE 486 (489)
Q Consensus 438 ~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~~---~~y~~~~~~~g~~ 486 (489)
.....+.... ....++.+||..|++.++|+...+. ..-..|.+..|.+
T Consensus 409 ~~~~i~~~~~-~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~ 459 (733)
T TIGR01243 409 EAEEIPAEVL-KELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLE 459 (733)
T ss_pred ccccccchhc-ccccccHHHHHHHHhhccccccchhhccccccchhhcccHH
Confidence 0111111111 1234899999999999999975432 2234566655544
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.97 E-value=7.3e-30 Score=281.71 Aligned_cols=245 Identities=33% Similarity=0.518 Sum_probs=213.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
...+|+++.|.+..++.+.+.+.. +..++.+... ...++++||+||||||||+++++++++++.+|+.++++++...+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 456799999999999999998766 4455555433 45668999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCccc
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld 361 (489)
.|.....++.+|..++..+|+||||||+|.+...++.. ...+....++++.+|..||++... ..++||+|||+|+.+|
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~lD 304 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLD 304 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhcC
Confidence 99999999999999999999999999999999877642 223344567889999999988653 4588999999999999
Q ss_pred HHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q 011305 362 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 439 (489)
Q Consensus 362 ~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~ 439 (489)
++++| ||++.+.++.|+.++|.+||+.++.+.+...+.++..+++.|.||||+||.++|++|+..++++-
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~-------- 376 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-------- 376 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 99998 99999999999999999999999999888888999999999999999999999999999877641
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 440 EVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 440 ~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
...|+.+||++|+.++.+.
T Consensus 377 ----------~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 377 ----------KRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred ----------CCcccHHHHHHHHHHHhcc
Confidence 1249999999999877654
No 34
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-31 Score=291.86 Aligned_cols=264 Identities=34% Similarity=0.594 Sum_probs=224.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEecc
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISAS 276 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s 276 (489)
...+.|++|+|++.++..|++.+..|+.||+.|..+ ..||++||||||||||||+.|+++|..+ ...|+.-+++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 356789999999999999999999999999999987 8999999999999999999999999988 4667777889
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+..++|+|+.++.++.+|+.|+..+|+|+|+||||.|++.|+.... .....++..||..|+|+..++. |+||+|||+
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgq-VvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQ-VVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCc-eEEEcccCC
Confidence 9999999999999999999999999999999999999999864322 2245689999999999987665 889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
|+.+|++++| ||++.++||+|+.+.|..|+..+..+-...... -++.+|+.|.||.|+||+.+|.+|++.+++|.-.
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 9999999999 999999999999999999999998776644332 3677999999999999999999999999987654
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 471 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~ 471 (489)
..........-+. .. ..+..+||..|+.++.|+.+.
T Consensus 496 q~y~s~~kl~~d~-~~-ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 496 QIYSSSDKLLIDV-AL-IKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred eeecccccccccc-hh-hhhhhHhhhhhhhccCCCCCc
Confidence 4433322222111 11 128899999999998887654
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-30 Score=265.50 Aligned_cols=270 Identities=29% Similarity=0.447 Sum_probs=218.0
Q ss_pred CCCCCcc--ccCcHHHHHH-HHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhC-CcEEEEeccch
Q 011305 204 PDVKWES--IKGLENAKRL-LKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECK-TTFFNISASSV 278 (489)
Q Consensus 204 ~~~~~~d--liG~e~~k~~-L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~-~~~i~v~~s~l 278 (489)
|+-.|++ |+|++.--.. .+++.....--|+...++ ....+|+|||||||||||.+||.|.+.++ .+--.|++.++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 5556666 5777654433 455555555556666655 56668999999999999999999999996 44566899999
Q ss_pred hhhhccchHHHHHHHHHHHHhc--------CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 279 VSKWRGDSEKLIKVLFELARHH--------APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~--------~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
.++|+|+++.+++.+|..|... .-.||++||||+++.+|++......+...++++||.-|||+..-+ +++|
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN-NILV 372 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN-NILV 372 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh-cEEE
Confidence 9999999999999999988531 124999999999999999888888888999999999999997544 5999
Q ss_pred EEEeCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCC----CCCCCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 351 LAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQT----GEESLPYDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 351 IatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~----~~~~~dl~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
|+-||+++.+|+||+| ||+.++++.+||+..|.+|++.+.+++. +..++|+++||..|..|||++|+.+++.|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999876543 457899999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh---hHHHHH
Q 011305 425 MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL---HAHRYE 477 (489)
Q Consensus 425 ~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~---~~~~y~ 477 (489)
..|+.|....- ......+. ..+.. .|+++||..||..++|+.-. +++.|.
T Consensus 453 S~A~nR~vk~~-~~~~~~~~-~~e~l-kV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 453 SFAMNRHVKAG-GKVEVDPV-AIENL-KVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHhhhccC-cceecCch-hhhhe-eecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 99998876543 11222221 12222 39999999999999999542 355544
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=1.3e-29 Score=291.38 Aligned_cols=204 Identities=22% Similarity=0.272 Sum_probs=169.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh----------cc------------------------
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW----------RG------------------------ 284 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~----------~g------------------------ 284 (489)
..+++||||+||||||||+||+|+|.++++||+.|+++++...+ +|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 57889999999999999999999999999999999999998654 11
Q ss_pred -------ch--HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--cCCCcEEEEEE
Q 011305 285 -------DS--EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDELVFVLAA 353 (489)
Q Consensus 285 -------~~--~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~~~~~viVIat 353 (489)
.. ...++.+|+.|+.++||||||||||++..+.. ....++.|+.+|++.. ....+|+||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 11 22378899999999999999999999976521 1224788999999764 23457999999
Q ss_pred eCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhc--CCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 354 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLL--PSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 354 Tn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l--~~~~~~~-~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
||+|+.||||++| ||++.|.++.|+..+|.+++..++ +...... ..+++.+|+.|.||+|+||.++|++|+..++
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999887653 3333333 3579999999999999999999999999988
Q ss_pred HHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 429 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 429 rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
++.. ..|+.+||+.|+.++...
T Consensus 1859 rq~k------------------s~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1859 TQKK------------------SIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HcCC------------------CccCHHHHHHHHHHHHhh
Confidence 8621 138999999999877544
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=1.7e-28 Score=247.56 Aligned_cols=186 Identities=20% Similarity=0.207 Sum_probs=151.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHh-----cCCcEEEEchhhhH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAI 313 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~-----~~p~VL~IDEiD~l 313 (489)
..+|++++||||||||||++|+++|++++.+++.++++++.++|+|++++.++.+|..|+. .+||||||||||++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 5788999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred HhhhcccchhhHHHHHH-HHHHHHHhcCCc-----------cCCCcEEEEEEeCCCCcccHHHHh--hcccccccCCCCH
Q 011305 314 ISQRGEARSEHEASRRL-KTELLIQMDGLT-----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 379 (489)
Q Consensus 314 ~~~r~~~~~~~~~~~~i-~~~LL~~ldg~~-----------~~~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~ 379 (489)
++.+... ......++ ..+|++.+|+.. .....|+||+|||+|+.||++|+| ||++.+ ..|+.
T Consensus 225 ~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~ 300 (413)
T PLN00020 225 AGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR 300 (413)
T ss_pred CCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence 9987632 23333444 489999988642 335669999999999999999999 999865 58999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhHHHH
Q 011305 380 EARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 380 ~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G----~sg~Di~~l~~~A~~~a~r 429 (489)
++|.+||+.++++..+. ..++..|+..+.| |.|+--..+..++...-+.
T Consensus 301 e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 301 EDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999887665 4677778877766 4444334444444444333
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=7.5e-23 Score=205.36 Aligned_cols=235 Identities=19% Similarity=0.235 Sum_probs=168.9
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhccc----CCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeccc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 277 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~----~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s~ 277 (489)
++++|++++|+++++++.+.. .++.+... ..++.++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 489999999999999876633 33333322 1234579999999999999999999976 24699999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+.+.+.|+++.....++..+. ++||||||+|.+...+. .......++..|+..|+.. ...++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQ---RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC----ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcH
Confidence 999999988888888887764 38999999999865322 1223466788898888743 2346677776532
Q ss_pred C-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHH------hcCCc-HHHHHHHHHHHH
Q 011305 358 W-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVER------TEGYS-GSDIRLVSKEAA 424 (489)
Q Consensus 358 ~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~------t~G~s-g~Di~~l~~~A~ 424 (489)
. .++|++++||+..+.|+.|+.+++.+|++.++.+.....+.+ ...+... ...|. +++++++++.+.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 2 246999999999999999999999999999998766543332 2333332 13344 899999999999
Q ss_pred hHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHH
Q 011305 425 MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI 460 (489)
Q Consensus 425 ~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~ 460 (489)
.....|....-. +..+ ......|+.+||.+
T Consensus 252 ~~~~~r~~~~~~---~~~~---~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGG---RVLT---KADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCC---CCCC---HHHHhCCCHHHHhH
Confidence 988887665311 1111 11234577888754
No 39
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=2.8e-22 Score=201.12 Aligned_cols=235 Identities=19% Similarity=0.225 Sum_probs=169.8
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhccc----CCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEEeccch
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNISASSV 278 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~----~~~~~~vLL~GppGtGKT~lAralA~el~-------~~~i~v~~s~l 278 (489)
+++|++++|+++.+++.+ ...++.+... ..+..+++|+||||||||++|+++|+.+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999998777 4344443322 22456899999999999999999998772 37999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP- 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p- 357 (489)
.+.+.|+++..+..+|+.+.. +||||||++.+...++. ......+++.|+..|+.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQ---RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHH
Confidence 999999888888888887654 89999999998643221 223456778889988732 2446677776543
Q ss_pred -Cc---ccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh------c-CCcHHHHHHHHHHHHh
Q 011305 358 -WE---LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT------E-GYSGSDIRLVSKEAAM 425 (489)
Q Consensus 358 -~~---Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t------~-G~sg~Di~~l~~~A~~ 425 (489)
+. +++++.+||...+.||.++.+++..|+..++.+.....+.+ +..+.... + --+++++++++..+..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 22 58999999999999999999999999999998765443333 23333331 2 2358999999999988
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 011305 426 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 461 (489)
Q Consensus 426 ~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~A 461 (489)
....|+...... ..+. .....|+.+|+..+
T Consensus 252 ~~~~r~~~~~~~---~~~~---~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLDR---VLDK---SDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcCC---CCCH---HHHhCCCHHHHhhc
Confidence 877776543111 1111 12345888888654
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=2.5e-22 Score=199.15 Aligned_cols=215 Identities=18% Similarity=0.189 Sum_probs=157.8
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhccc---CCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeccc
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGL---LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 277 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~---~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s~ 277 (489)
+++++|++.+|+++++.+.+..........+ .+...+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 6789999999999999887765443322222 2334689999999999999999999875 34788999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+.+.++|+....+..+|..+. ++||||||+|.|.... +....+..++.|+..|+.. ...+++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-----EKDFGKEAIDTLVKGMEDN---RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-----ccchHHHHHHHHHHHHhcc---CCCEEEEecCCcc
Confidence 999999999999999988775 3899999999996321 1122355677888888743 2334455554322
Q ss_pred -----CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh---------cCCcHHHHHHHHHH
Q 011305 358 -----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT---------EGYSGSDIRLVSKE 422 (489)
Q Consensus 358 -----~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t---------~G~sg~Di~~l~~~ 422 (489)
..+++++++||...+.||.++.+++.+|++.++.......+.+ ++.+++.. ..-+++.+++++..
T Consensus 154 ~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 154 EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 2368899999998999999999999999999997765543333 34443321 12467888888888
Q ss_pred HHhHHHHHHHH
Q 011305 423 AAMQPLRRLMV 433 (489)
Q Consensus 423 A~~~a~rR~~~ 433 (489)
|......|.+.
T Consensus 234 a~~~~~~r~~~ 244 (261)
T TIGR02881 234 AIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHhc
Confidence 88776666543
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.8e-21 Score=195.92 Aligned_cols=213 Identities=24% Similarity=0.388 Sum_probs=164.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
..+..|+++|-....++.+..+....- +... ...|.+++|||||||||||++|+.+|...|..+-.+.+.++..-.
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTa-NTK~---h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG 424 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATA-NTKK---HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG 424 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhc-cccc---ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc
Confidence 345569999999999999988654422 1111 135668999999999999999999999999999999888875432
Q ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCccc
Q 011305 283 RGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld 361 (489)
. +.-..++.+|+.++... .-+|||||+|.++.+|.... -++..+..++.||..-. .....++++.+||+|..+|
T Consensus 425 ~-qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty-mSEaqRsaLNAlLfRTG---dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 A-QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY-MSEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred h-HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh-hcHHHHHHHHHHHHHhc---ccccceEEEeccCCccchh
Confidence 2 34467899999998754 35889999999999886532 34556778888887653 2334577888999999999
Q ss_pred HHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC----------------------CC-CC----HHHHHHHhcCCcHH
Q 011305 362 AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE----------------------ES-LP----YDLLVERTEGYSGS 414 (489)
Q Consensus 362 ~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~----------------------~~-~d----l~~La~~t~G~sg~ 414 (489)
.++-+||+..++||+|..++|..||..|+.++... .+ .+ +.+.|++|+||||+
T Consensus 500 sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 500 SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 99999999999999999999999999988544321 01 11 45688999999999
Q ss_pred HHHHHHHHHH
Q 011305 415 DIRLVSKEAA 424 (489)
Q Consensus 415 Di~~l~~~A~ 424 (489)
+|..|+....
T Consensus 580 EiakLva~vQ 589 (630)
T KOG0742|consen 580 EIAKLVASVQ 589 (630)
T ss_pred HHHHHHHHHH
Confidence 9998776433
No 42
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.5e-22 Score=213.00 Aligned_cols=241 Identities=22% Similarity=0.261 Sum_probs=198.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~ 322 (489)
..+||+|+||||||++++++|+++|.+++.++|.++.....+..+..+...|..|+...|+|||+-++|.+..+... +
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-g- 509 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-G- 509 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-c-
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999855433 1
Q ss_pred hhHHHHHHHHHHHHH--hcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 011305 323 EHEASRRLKTELLIQ--MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP 400 (489)
Q Consensus 323 ~~~~~~~i~~~LL~~--ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d 400 (489)
...++...+-.. .+........++||++|+..+.+++.+++-|.+++.++.|+.++|.+||+.++.......++.
T Consensus 510 ---ed~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~ 586 (953)
T KOG0736|consen 510 ---EDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVN 586 (953)
T ss_pred ---hhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHH
Confidence 123333333222 333444566799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh--hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhhH----H
Q 011305 401 YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL--EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA----H 474 (489)
Q Consensus 401 l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l--e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~~----~ 474 (489)
++.++.+|.||+.+|+..++.+....+..+..+.. ...++............+++|||.+++.++|...+..+ .
T Consensus 587 ~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKI 666 (953)
T KOG0736|consen 587 LKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKI 666 (953)
T ss_pred HHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCC
Confidence 99999999999999999999988665555544322 11222233334455667999999999999998877654 4
Q ss_pred HHHHHHHHhchhhc
Q 011305 475 RYEKFNADYGSEIL 488 (489)
Q Consensus 475 ~y~~~~~~~g~~~~ 488 (489)
..+.|.+..|.|..
T Consensus 667 PnV~WdDVGGLeev 680 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEV 680 (953)
T ss_pred CccchhcccCHHHH
Confidence 57889999998764
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.8e-21 Score=191.25 Aligned_cols=185 Identities=31% Similarity=0.449 Sum_probs=151.2
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhh--cccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEec
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISA 275 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~--~~~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~ 275 (489)
-|+.++--.++|+.|...+...+...+.. ..+....+-+|||||||||||+|++++|+.+ ...++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 38899999999999998877755444322 2234555679999999999999999999998 355799999
Q ss_pred cchhhhhccchHHHHHHHHHHHHhcC---C--cEEEEchhhhHHhhhccc--chhhHHHHHHHHHHHHHhcCCccCCCcE
Q 011305 276 SSVVSKWRGDSEKLIKVLFELARHHA---P--STIFLDEIDAIISQRGEA--RSEHEASRRLKTELLIQMDGLTQSDELV 348 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~~~~---p--~VL~IDEiD~l~~~r~~~--~~~~~~~~~i~~~LL~~ldg~~~~~~~v 348 (489)
..++++|.+++.+.+..+|++....- . ..++|||+++|+..|... ..+....-++++++|+++|.+... ++|
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-~Nv 298 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-PNV 298 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-CCE
Confidence 99999999999999999998876421 1 356689999999988532 233334557899999999988654 558
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
++++|+|-.+.+|.|+.+|-+-..++++|+...+.+|++.++.+
T Consensus 299 liL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999987743
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=2.8e-21 Score=169.92 Aligned_cols=130 Identities=41% Similarity=0.660 Sum_probs=116.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcC-CcEEEEchhhhHHhhhcccchh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSE 323 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~-p~VL~IDEiD~l~~~r~~~~~~ 323 (489)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.+...+.+..+|..+.... |+||||||+|.+....+ ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~--~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ--PSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS--TSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc--ccc
Confidence 689999999999999999999999999999999998889999999999999998887 99999999999998872 234
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHH-hhcccccccCC
Q 011305 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAML-RRLEKRILVPL 376 (489)
Q Consensus 324 ~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~-rRf~~~i~~~~ 376 (489)
......+++.|+..++........++||++||.++.++++++ +||+..+++|+
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 455677889999999988777677999999999999999999 99999998874
No 45
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.6e-20 Score=199.64 Aligned_cols=254 Identities=21% Similarity=0.241 Sum_probs=193.5
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeccchhhhhcc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSVVSKWRG 284 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~s~l~~~~~g 284 (489)
.+++-...+|+...+....| ...+.++||+||+|||||.|++++++++. .++..++|+.+.+....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 34555556666655433222 23346899999999999999999999884 56778999999888788
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcc-cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHH
Q 011305 285 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 363 (489)
Q Consensus 285 ~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~-~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~a 363 (489)
...+.+..+|..+..++|+||++|++|.|++.... .+..+....++...+.+.+..+...+..+.+|++.+....+++.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 88889999999999999999999999999984332 23334444444444445555555667778899999999999998
Q ss_pred HHh--hcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 364 MLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 364 l~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
+.+ +|+..+.+|.|+..+|.+||+..+++.... ...|++-++..|+||...|+..++.+|.+.+.......
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~------ 631 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN------ 631 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc------
Confidence 887 899999999999999999999999876633 33467779999999999999999999999887432210
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhhCCChhhhHHH--H--HHHHHHhchh
Q 011305 441 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHR--Y--EKFNADYGSE 486 (489)
Q Consensus 441 ~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~~~~--y--~~~~~~~g~~ 486 (489)
.+ +-+|.++|.++|+.+.|.+.+.++. - -.|.+..|.+
T Consensus 632 ------~~--klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~ 673 (952)
T KOG0735|consen 632 ------GP--KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLF 673 (952)
T ss_pred ------Cc--ccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHH
Confidence 11 1399999999999999988764322 1 3566666643
No 46
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.5e-20 Score=191.45 Aligned_cols=224 Identities=23% Similarity=0.351 Sum_probs=171.4
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCC-ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhcc
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 284 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~-~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g 284 (489)
.+|+.|+-..+.|+.+.+-+..+.+..+++.+...++ +|.|||||||||||+++.|+|++++..++.+..++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc---
Confidence 6788999999999999999999999999998875555 799999999999999999999999999999988775322
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-----hhHHHHHHHHHHHHHhcCCcc-CCCcEEEEEEeCCCC
Q 011305 285 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-----EHEASRRLKTELLIQMDGLTQ-SDELVFVLAATNLPW 358 (489)
Q Consensus 285 ~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-----~~~~~~~i~~~LL~~ldg~~~-~~~~viVIatTn~p~ 358 (489)
. . ++.++..... .+||+|+|||+-+.-+..... ....+...++.||+.+||+.. .++-.|||.|||.++
T Consensus 275 -~-d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 275 -S-D-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -H-H-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2 2 6666655443 379999999987653321111 111234678999999999954 445577899999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC--CcHHHHHH-HHHH--HHhHHHHHH
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG--YSGSDIRL-VSKE--AAMQPLRRL 431 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G--~sg~Di~~-l~~~--A~~~a~rR~ 431 (489)
.|||||+| |.+.+|+++..+.+.-+.++..|+.-.. ...-++++.+...+ .||+|+.. ++.. .+..+++++
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~L 427 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGL 427 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHH
Confidence 99999999 9999999999999999999999996533 11223444444333 59999976 4443 477777777
Q ss_pred HHHhhhhh
Q 011305 432 MVLLEGRQ 439 (489)
Q Consensus 432 ~~~le~~~ 439 (489)
...++...
T Consensus 428 v~~l~~~~ 435 (457)
T KOG0743|consen 428 VEALESKK 435 (457)
T ss_pred HHHHHhhh
Confidence 76665443
No 47
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.80 E-value=6.1e-19 Score=168.19 Aligned_cols=191 Identities=18% Similarity=0.182 Sum_probs=125.4
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
...+.+|+|++|+++++..++-.+....... .+..++|||||||+||||||+.+|++++.++..++++.+...
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 3466789999999999999987665543221 234689999999999999999999999999999888654211
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-----C----------CC
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-----S----------DE 346 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-----~----------~~ 346 (489)
..+..++... ....|||||||+.+.. .++..|+..|+...- . -.
T Consensus 90 ------~dl~~il~~l--~~~~ILFIDEIHRlnk-------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 90 ------GDLAAILTNL--KEGDILFIDEIHRLNK-------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp ------HHHHHHHHT----TT-EEEECTCCC--H-------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred ------HHHHHHHHhc--CCCcEEEEechhhccH-------------HHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1222333322 2347999999999853 355678888874431 1 12
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHH
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~ 421 (489)
+.-+|+||++...+++++++||.....+..++.++..+|++......+...+.+ ..++|.++.| +++-...+++
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 466889999999999999999999889999999999999998887766664443 5667777776 5555444444
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.78 E-value=5.2e-18 Score=171.94 Aligned_cols=216 Identities=25% Similarity=0.310 Sum_probs=142.8
Q ss_pred CCCCCCccccCcHHHHH---HHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~---~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
..+.++++++|++.... -|..++.. ....+++|||||||||||+|+.||+..+.+|..+++..
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 35678999999998763 35555433 22368999999999999999999999999999999754
Q ss_pred hhhccchHHHHHHHHHHHHhcC----CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 011305 280 SKWRGDSEKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~----p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn 355 (489)
..-+.++.+++.|+... ..|||||||+.+... -++.||-.++ .+..++|-+||.
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-------------QQD~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-------------QQDALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-------------hhhhhhhhhc----CCeEEEEeccCC
Confidence 34567888888885433 379999999988543 3456777775 333344445555
Q ss_pred CC-CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC--CCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 356 LP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS--QTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 356 ~p-~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~--~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
+| ..++++++||+ .++.+...+.++..+++...+.. .++. ..+.++ .+....+-..+.+..|+.
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~-----------~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLD-----------EEALDYLVRLSNGDARRA 209 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCC-----------HHHHHHHHHhcCchHHHH
Confidence 56 57999999999 67888999999999998884422 2222 011111 122222333333444555
Q ss_pred HHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh
Q 011305 432 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 471 (489)
Q Consensus 432 ~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~ 471 (489)
++.+|.......... .++.+++++.+.+-.+...+
T Consensus 210 LN~LE~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~Dk 244 (436)
T COG2256 210 LNLLELAALSAEPDE-----VLILELLEEILQRRSARFDK 244 (436)
T ss_pred HHHHHHHHHhcCCCc-----ccCHHHHHHHHhhhhhccCC
Confidence 555554433322222 25588888888776665443
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.77 E-value=1.6e-17 Score=168.07 Aligned_cols=189 Identities=17% Similarity=0.161 Sum_probs=133.2
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccch
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~ 286 (489)
+|++++|++++++.|..++...... ...+.+++|+||||||||++|+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6899999999999999887543322 123468999999999999999999999998877766543221
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------cCCCcEEEE
Q 011305 287 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELVFVL 351 (489)
Q Consensus 287 ~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~---------------~~~~~viVI 351 (489)
...+...+.. ...+.+|||||+|.+.... ...|+..++... ....++.+|
T Consensus 69 ~~~l~~~l~~--~~~~~vl~iDEi~~l~~~~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 69 PGDLAAILTN--LEEGDVLFIDEIHRLSPAV-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred chhHHHHHHh--cccCCEEEEehHhhhCHHH-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 1112222222 1345899999999986542 122333332111 112336788
Q ss_pred EEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 352 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 352 atTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
++|+++..+++++++||...+.++.|+.+++.++++..+.......+. .++.+++.+.|.. +.+..++..++
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 899999999999999998889999999999999999888755544333 3667888888755 56666666544
No 50
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.77 E-value=3.7e-17 Score=167.45 Aligned_cols=220 Identities=18% Similarity=0.130 Sum_probs=152.1
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
+..+.+|++++|+++.++.+...+...... ..++.++||+||||||||++|+++|++++..+..+++..+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~- 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK- 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-
Confidence 345668999999999999999877543221 234578999999999999999999999999888777654321
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------cCCC
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDE 346 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~---------------~~~~ 346 (489)
...+..++... ..++||||||+|.+.... .+.++..|+... ....
T Consensus 90 -----~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 90 -----PGDLAAILTNL--EEGDVLFIDEIHRLSPVV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred -----hHHHHHHHHhc--ccCCEEEEecHhhcchHH-------------HHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 12233333332 346899999999985431 112233332211 0112
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHh
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~ 425 (489)
.+.+|++|+++..+++++++||...+.++.|+.+++.+|++..+.......+. .++.+++.+.|.. +.+..+++.+..
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence 36788899999999999999999889999999999999999988776655443 3677888888744 666666665444
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 426 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 426 ~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
.+..+ ....|+.+++..++..+...
T Consensus 229 ~a~~~------------------~~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 229 FAQVK------------------GDGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHHc------------------CCCCCCHHHHHHHHHHhCCC
Confidence 33221 01237777777777766544
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.75 E-value=3.1e-17 Score=185.42 Aligned_cols=231 Identities=21% Similarity=0.223 Sum_probs=155.9
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh---------h
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---------S 280 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~---------~ 280 (489)
+++|++.+|+.+.+++........ ..+.+++|+||||||||++|+++|+.++.+++.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~------~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGK------MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcC------CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 588999999999998765432221 1234799999999999999999999999999999875432 2
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC-----C-------ccCCCcE
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-----L-------TQSDELV 348 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg-----~-------~~~~~~v 348 (489)
.|+|.....+...+..+....| ||+|||+|.+....+.. ..+.|+..+|. + .....++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 4666666677777877766665 89999999998643211 23456665552 1 1112468
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcC-----CCCCC------CCCCHHHHHHH-hcCCcHHHH
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP-----SQTGE------ESLPYDLLVER-TEGYSGSDI 416 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~-----~~~~~------~~~dl~~La~~-t~G~sg~Di 416 (489)
++|+|||.++.+++++++|| ..+.|+.|+.+++..|++.++. ..++. .+..+..+++. +..+..+++
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l 543 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNL 543 (775)
T ss_pred EEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHH
Confidence 89999999999999999999 4789999999999999988762 22221 11224445543 334555777
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 417 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 417 ~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
+..+.......+++.... +.. .... .....|+.+++++.+.
T Consensus 544 ~r~i~~~~~~~~~~~~~~--~~~--~~~~--~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 544 ERQIEKICRKAAVKLVEQ--GEK--KKSE--AESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHHHHHHHHhc--cCc--ccCC--cccccCCHHHHHHhcC
Confidence 776666665554443210 100 0000 0113489999888876
No 52
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.75 E-value=5.1e-17 Score=182.70 Aligned_cols=236 Identities=20% Similarity=0.305 Sum_probs=162.3
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 011305 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (489)
Q Consensus 195 ~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------- 266 (489)
....+.....+-++++++|.++..+.+.+.+.. ....+++|+||||||||++|+++|+.+
T Consensus 168 ~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~ 235 (731)
T TIGR02639 168 YTVDLTEKAKNGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPEN 235 (731)
T ss_pred HhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh
Confidence 344444555566899999999999887766533 123689999999999999999999987
Q ss_pred --CCcEEEEeccchh--hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011305 267 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 342 (489)
Q Consensus 267 --~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~ 342 (489)
+.+++.++++.+. .+|.|+.+..++.+++.+....|+||||||+|.+.+.........+ +.+.|...+.
T Consensus 236 l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~----~~~~L~~~l~--- 308 (731)
T TIGR02639 236 LKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD----ASNLLKPALS--- 308 (731)
T ss_pred hcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH----HHHHHHHHHh---
Confidence 7789999998887 4788999999999999998778899999999999876432221111 2233333332
Q ss_pred cCCCcEEEEEEeCCC-----CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCC----C-CCCCHHHHHHHhcCCc
Q 011305 343 QSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG----E-ESLPYDLLVERTEGYS 412 (489)
Q Consensus 343 ~~~~~viVIatTn~p-----~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~----~-~~~dl~~La~~t~G~s 412 (489)
.+.+.+|++||.. ...|+++.|||. .+.++.|+.+++.+||+........ . .+..+..++..+..|-
T Consensus 309 --~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 309 --SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred --CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 2347788888863 347999999996 6999999999999999977654221 1 1223455566555554
Q ss_pred HHH-----HHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 413 GSD-----IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 413 g~D-----i~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
+.. .-.++.+|.... + +.+.. .....|+.+|+..+++...
T Consensus 386 ~~r~~P~kai~lld~a~a~~--~----------~~~~~--~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 386 NDRFLPDKAIDVIDEAGASF--R----------LRPKA--KKKANVSVKDIENVVAKMA 430 (731)
T ss_pred ccccCCHHHHHHHHHhhhhh--h----------cCccc--ccccccCHHHHHHHHHHHh
Confidence 321 122333332210 0 00000 0113499999999998875
No 53
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=2.6e-17 Score=177.70 Aligned_cols=191 Identities=18% Similarity=0.236 Sum_probs=137.3
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+.+|+.+++
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 345678889999999999999999887642 23467899999999999999999999865
Q ss_pred -------------------cEEEEeccchhhhhccchHHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhH
Q 011305 269 -------------------TFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHE 325 (489)
Q Consensus 269 -------------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~ 325 (489)
.+++++..+- ..+ ..++.+.+.. ......|++|||+|.|..
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas~--~gV----DdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------- 138 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAASN--RGV----DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------- 138 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEeccccc--CCH----HHHHHHHHHHHhchhcCCceEEEEEChHhcCH----------
Confidence 2334433211 112 2334444333 233457999999999843
Q ss_pred HHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHH
Q 011305 326 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLL 404 (489)
Q Consensus 326 ~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~L 404 (489)
...+.||+.|+. ....+++|.+||+++.+.+.++||| ..+.|..++.++..+.++..+...+...+.+ ++.|
T Consensus 139 ---~AaNALLKTLEE---PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~I 211 (700)
T PRK12323 139 ---HAFNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLL 211 (700)
T ss_pred ---HHHHHHHHhhcc---CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 246788888873 3445778888999999999999999 7799999999999999988876665554433 5556
Q ss_pred HHHhcCCcHHHHHHHHHHHH
Q 011305 405 VERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 405 a~~t~G~sg~Di~~l~~~A~ 424 (489)
++.+.| +.++...++..+.
T Consensus 212 A~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 212 AQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 666554 5566666655443
No 54
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.74 E-value=7.6e-17 Score=174.83 Aligned_cols=222 Identities=22% Similarity=0.269 Sum_probs=149.9
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 011305 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (489)
Q Consensus 195 ~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------- 266 (489)
+.+.+.++.++.+|++++|++..++.++..+.. ..+.++||+||||||||++|+++++.+
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~ 118 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF 118 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence 345566777889999999999999999865422 234689999999999999999998753
Q ss_pred --CCcEEEEeccch-------hhhhccchHH----------------HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc
Q 011305 267 --KTTFFNISASSV-------VSKWRGDSEK----------------LIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321 (489)
Q Consensus 267 --~~~~i~v~~s~l-------~~~~~g~~~~----------------~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~ 321 (489)
+.+|+.++|... .....+.... .....+.. ...++|||||++.+.+.
T Consensus 119 ~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~~~----- 190 (531)
T TIGR02902 119 KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELHPV----- 190 (531)
T ss_pred CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCCHH-----
Confidence 368999998632 1111110000 00011222 23489999999998654
Q ss_pred hhhHHHHHHHHHHHHHhcCCc--------------------------cCCCcEEEEEEeCCCCcccHHHHhhcccccccC
Q 011305 322 SEHEASRRLKTELLIQMDGLT--------------------------QSDELVFVLAATNLPWELDAAMLRRLEKRILVP 375 (489)
Q Consensus 322 ~~~~~~~~i~~~LL~~ldg~~--------------------------~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~ 375 (489)
.++.|+..++.-. ...+..+|++||+.|+.+++++++|| ..+.|+
T Consensus 191 --------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~ 261 (531)
T TIGR02902 191 --------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFR 261 (531)
T ss_pred --------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCC
Confidence 3344555443210 01223556677788999999999999 568899
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCC
Q 011305 376 LPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR 454 (489)
Q Consensus 376 ~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It 454 (489)
.++.+++.+|++..+++.....+.+ ++.++..+. +++++.++++.|+..+..+ ++ ..|+
T Consensus 262 pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~------~~------------~~It 321 (531)
T TIGR02902 262 PLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE------GR------------KRIL 321 (531)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC------CC------------cEEc
Confidence 9999999999999998766553332 444554443 6788888888877644321 11 2399
Q ss_pred HHHHHHHHhhh
Q 011305 455 PEDVEIALKNT 465 (489)
Q Consensus 455 ~eDf~~AL~~~ 465 (489)
.+|++.++..-
T Consensus 322 ~~dI~~vl~~~ 332 (531)
T TIGR02902 322 AEDIEWVAENG 332 (531)
T ss_pred HHHHHHHhCCc
Confidence 99999999743
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=7.5e-17 Score=170.19 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=132.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++++.+|++++|++.+.+.|+..+... ..++.+||+||+|||||++|+.+|+.++..
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 345678889999999999999999887542 234569999999999999999999998652
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.+++..- ..-..++.+.+.+. .....|++|||+|.+.. ..
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-------------~A 137 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-------------QS 137 (484)
T ss_pred CCcHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-------------HH
Confidence 333333210 11223344333332 33457999999998843 35
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
++.||..++. ....+++|.+|+.++.+.+++++|| ..+.|..++.++....++..+...+...+. .+..|++...
T Consensus 138 ~NALLKtLEE---Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~ 213 (484)
T PRK14956 138 FNALLKTLEE---PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGD 213 (484)
T ss_pred HHHHHHHhhc---CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6788888863 4456778888888999999999999 558888888888888888888766654332 3555666555
Q ss_pred CCcHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKE 422 (489)
Q Consensus 410 G~sg~Di~~l~~~ 422 (489)
| +.+|.-.++..
T Consensus 214 G-d~RdAL~lLeq 225 (484)
T PRK14956 214 G-SVRDMLSFMEQ 225 (484)
T ss_pred C-hHHHHHHHHHH
Confidence 4 34444444433
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=6.9e-17 Score=176.46 Aligned_cols=191 Identities=19% Similarity=0.199 Sum_probs=137.3
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++.+.+|++|+|++.+++.|+..+.. ...++.+||+||+|||||++++.+|+.+++
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 34567889999999999999999988753 123467899999999999999999998864
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.+++++..+- ..-..++.+++.+. .....|++|||+|.|.. ..
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------~A 135 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------HA 135 (830)
T ss_pred ccHHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-------------HH
Confidence 2344433221 11223444444433 23457999999998843 24
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
.+.||+.|+. ....+.+|.+||+++.+.+.|+||| ..+.|..++.++..+.|+..+...+...+. .+..|++...
T Consensus 136 ~NALLKtLEE---PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~ 211 (830)
T PRK07003 136 FNAMLKTLEE---PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQ 211 (830)
T ss_pred HHHHHHHHHh---cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5778888873 3345778888999999999999999 669999999999999999988777665443 3566777776
Q ss_pred CCcHHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAA 424 (489)
Q Consensus 410 G~sg~Di~~l~~~A~ 424 (489)
|- .++.-.++.++.
T Consensus 212 Gs-mRdALsLLdQAi 225 (830)
T PRK07003 212 GS-MRDALSLTDQAI 225 (830)
T ss_pred CC-HHHHHHHHHHHH
Confidence 63 455555544444
No 57
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.3e-16 Score=170.16 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=126.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+..++++.+|++++|++.+++.|...+... ..++++||+||||||||++|+++|+.++.
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 345678889999999999999998876542 23467999999999999999999999864
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.++.++++.- ..-..++.+.+.+.. ....||+|||+|.+... .
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a 133 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE-------------A 133 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-------------H
Confidence 3555554321 112234444444332 23469999999988432 3
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~ 409 (489)
++.|+..++. .++.+++|++|+.+..+++++++|| ..+.|..++.++...+++..+...+...+ ..++.|++.+.
T Consensus 134 ~~~LLk~LE~---p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 134 FNALLKTLEE---PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHHHh---CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 5667777763 2334666767777889999999999 57999999999999999998866554433 23556666555
Q ss_pred C
Q 011305 410 G 410 (489)
Q Consensus 410 G 410 (489)
|
T Consensus 210 G 210 (472)
T PRK14962 210 G 210 (472)
T ss_pred C
Confidence 4
No 58
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=3.3e-16 Score=152.47 Aligned_cols=190 Identities=19% Similarity=0.203 Sum_probs=140.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
-.+..|++.+|++++|++|.-++.....+. ...-|+||+||||.||||||+.+|+++|..+-..++.-+...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~- 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP- 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh-
Confidence 456789999999999999998887755433 234689999999999999999999999999888877665322
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc---------------CCCc
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---------------SDEL 347 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~---------------~~~~ 347 (489)
|+ +-.++... ....|||||||+++.+. +..-|+-.|+.+.- .-.+
T Consensus 92 -gD----laaiLt~L--e~~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 92 -GD----LAAILTNL--EEGDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -hh----HHHHHhcC--CcCCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 22 22223222 22379999999998654 33345555553321 1134
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHH
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~ 421 (489)
.-+|++|.+...+...+++||.....+..++.++..+|+...........+. ...++|+++.| +++-...|++
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHH
Confidence 6678999999999999999999999999999999999999988777666544 35678888876 4443333443
No 59
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.3e-16 Score=172.22 Aligned_cols=223 Identities=41% Similarity=0.597 Sum_probs=194.3
Q ss_pred ccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEE
Q 011305 229 IKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFL 307 (489)
Q Consensus 229 l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~I 307 (489)
+.+++.+... ..++++++++||||+|||+++++++.+ +..+..+++.+..+++.|..+.....+|..+....|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 4455555544 677899999999999999999999999 76668889999999999999999999999999999999999
Q ss_pred chhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHh--hcccccccCCCCHHHHHHH
Q 011305 308 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAM 385 (489)
Q Consensus 308 DEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~I 385 (489)
||+|.+.+.+.. ......+.+...++..+++.. ... +++++.+|.+..+++++++ ||+..+.++.|+...+.+|
T Consensus 83 d~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS--DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc--cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999998876 344556788999999999998 666 8899999999999999988 9999999999999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 386 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 386 L~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
+...........+.+.+.++..+.|++++++..+++++...+++|.. .. ......++.+|+.++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------~~------~~~~~~~~~~~~~~~l~~~ 226 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------DL------VGEYIGVTEDDFEEALKKV 226 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------cc------CcccccccHHHHHHHHHhc
Confidence 99998888877788999999999999999999999999999888754 00 1111238999999999999
Q ss_pred CCC
Q 011305 466 RPS 468 (489)
Q Consensus 466 ~ps 468 (489)
.|+
T Consensus 227 ~~~ 229 (494)
T COG0464 227 LPS 229 (494)
T ss_pred Ccc
Confidence 886
No 60
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=1.5e-16 Score=171.20 Aligned_cols=191 Identities=19% Similarity=0.185 Sum_probs=136.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++++.+|++|+|++.+++.|+..+... ..++.+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 445678899999999999999999888542 234678999999999999999999998642
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++++++++- ..-..++.+.+.+. .....|++|||+|.+... .
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a 135 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------S 135 (509)
T ss_pred CCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------H
Confidence 455554321 11223444444332 233469999999998532 4
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
.+.|+..++.. +..+.+|.+|+++..+.+.+++|+ ..+.|..++.++....++..+...+...+. .+..+++.+.
T Consensus 136 ~naLLk~LEep---p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~ 211 (509)
T PRK14958 136 FNALLKTLEEP---PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAAN 211 (509)
T ss_pred HHHHHHHHhcc---CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 57788888743 344667777788888988999999 668899999998888888888776655433 3556666665
Q ss_pred CCcHHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAA 424 (489)
Q Consensus 410 G~sg~Di~~l~~~A~ 424 (489)
| +.+++..++..+.
T Consensus 212 G-slR~al~lLdq~i 225 (509)
T PRK14958 212 G-SVRDALSLLDQSI 225 (509)
T ss_pred C-cHHHHHHHHHHHH
Confidence 4 5666666665443
No 61
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.7e-16 Score=163.20 Aligned_cols=190 Identities=16% Similarity=0.192 Sum_probs=131.6
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++.+.+|++|+|++.+++.++..+... ..++.+||+||||+|||++|+++|+.+...
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 345677889999999999999999877541 234678999999999999999999998532
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.+++++ ...-..++.+.+.+.. ....|++|||+|.+.. ..
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-------------~a 135 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-------------HS 135 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-------------HH
Confidence 22222211 0122334555544332 2246999999998842 24
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~ 409 (489)
.+.|+..++. .+..+.+|.+|++++.+.+++++|+ ..+.++.|+.++...+++..+...+...+ ..++.++..+.
T Consensus 136 ~naLLk~lEe---~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~ 211 (363)
T PRK14961 136 FNALLKTLEE---PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAH 211 (363)
T ss_pred HHHHHHHHhc---CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4668888763 3334566667788888999999999 66899999999999999998877664433 33555666665
Q ss_pred CCcHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEA 423 (489)
Q Consensus 410 G~sg~Di~~l~~~A 423 (489)
| +.+++..++..+
T Consensus 212 G-~~R~al~~l~~~ 224 (363)
T PRK14961 212 G-SMRDALNLLEHA 224 (363)
T ss_pred C-CHHHHHHHHHHH
Confidence 4 555555544443
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=3.7e-16 Score=169.26 Aligned_cols=189 Identities=19% Similarity=0.201 Sum_probs=135.9
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 268 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~----------- 268 (489)
.+++++.+|++|+|++.+++.|..++.. ...++.+||+||+|+|||++|+++|+.+++
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 4567788999999999999999988753 123478899999999999999999999865
Q ss_pred -------------cEEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 269 -------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 269 -------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
.++.+++++- ..-..++.+...+. ..+..|++|||+|.|... ..
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~ 135 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SF 135 (702)
T ss_pred CHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------HH
Confidence 3445554321 11223444444332 234579999999988432 45
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..++. ....+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+...+...+. .+..+++.+.|
T Consensus 136 NALLKtLEE---PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G 211 (702)
T PRK14960 136 NALLKTLEE---PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG 211 (702)
T ss_pred HHHHHHHhc---CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 678888873 2344567777888888999999999 669999999999999999988777665443 35667766654
Q ss_pred CcHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEA 423 (489)
Q Consensus 411 ~sg~Di~~l~~~A 423 (489)
+.+++..++..+
T Consensus 212 -dLRdALnLLDQa 223 (702)
T PRK14960 212 -SLRDALSLTDQA 223 (702)
T ss_pred -CHHHHHHHHHHH
Confidence 555555555443
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=99.69 E-value=5.6e-16 Score=166.62 Aligned_cols=193 Identities=23% Similarity=0.277 Sum_probs=138.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+..++.+.++++|+|++.+++.|++++..+.. ..+++++||+||||||||++|+++|++++.+++.+++++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 55678888999999999999999999866431 1336899999999999999999999999999999998875
Q ss_pred hhhhccchHHHHHHHHHHHHh------cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEE
Q 011305 279 VSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 352 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIa 352 (489)
... ..+..+...+.. ..+.||+|||+|.+....+ +..+..|+..++. .. ..+|+
T Consensus 76 r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~---~~--~~iIl 135 (482)
T PRK04195 76 RTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKK---AK--QPIIL 135 (482)
T ss_pred ccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHc---CC--CCEEE
Confidence 321 223333332221 2467999999999865311 1234556666652 12 23566
Q ss_pred EeCCCCcccH-HHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 353 ATNLPWELDA-AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 353 tTn~p~~Ld~-al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
++|.+..+.. .+++|+ ..+.|+.|+.++...+++..+...+...+ ..++.|++.+.| |++.+++...
T Consensus 136 i~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq 204 (482)
T PRK04195 136 TANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQ 204 (482)
T ss_pred eccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 7899888877 677777 67999999999999999999877666543 336667776554 6666555443
No 64
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=5.4e-16 Score=173.32 Aligned_cols=238 Identities=21% Similarity=0.290 Sum_probs=163.3
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------
Q 011305 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 266 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el------- 266 (489)
...+.+......-.++.++|.+...+.+.+.+.. ....++||+||||||||++|+++|...
T Consensus 171 ~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~ 238 (758)
T PRK11034 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE 238 (758)
T ss_pred HHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3445555555566788999999999998886644 123678999999999999999999875
Q ss_pred ---CCcEEEEeccchh--hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 267 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 267 ---~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
+..++.++...+. .+|.|+.+..++.++..+....++||||||+|.+.+.........+ +.+.|...+.
T Consensus 239 ~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d----~~nlLkp~L~-- 312 (758)
T PRK11034 239 VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD----AANLIKPLLS-- 312 (758)
T ss_pred hhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH----HHHHHHHHHh--
Confidence 4566676666655 4678899999999999888888899999999999876532211111 2222222221
Q ss_pred ccCCCcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHH-----HHHHhcC-
Q 011305 342 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL-----LVERTEG- 410 (489)
Q Consensus 342 ~~~~~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~-----La~~t~G- 410 (489)
...+.+|++|+.++ ..|+++.|||. .+.++.|+.+++..||+.+...+....++++.. ++..+..
T Consensus 313 ---~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 313 ---SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred ---CCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcc
Confidence 23478898888764 47999999995 699999999999999998876655554444322 3332333
Q ss_pred ----CcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 411 ----YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 411 ----~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
+.|...-.++.+|+... |+... .. ....|+.+|+.+.+++..-
T Consensus 389 i~~r~lPdKaidlldea~a~~--~~~~~----------~~--~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 389 INDRHLPDKAIDVIDEAGARA--RLMPV----------SK--RKKTVNVADIESVVARIAR 435 (758)
T ss_pred ccCccChHHHHHHHHHHHHhh--ccCcc----------cc--cccccChhhHHHHHHHHhC
Confidence 34455666777666421 11000 00 0124888999998887753
No 65
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=2e-15 Score=165.27 Aligned_cols=189 Identities=22% Similarity=0.249 Sum_probs=133.7
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+.+|+.+++.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 34567889999999999999999887541 234568999999999999999999998652
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.+++.+- ..-..++.+...+. .....|++|||+|.|.. ..+
T Consensus 76 C~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------~a~ 136 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSF 136 (647)
T ss_pred CHHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-------------HHH
Confidence 334443320 01122344333322 23457999999998843 356
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
+.||+.|+. .+..+.+|.+|+++..+.+.++||| ..+.|..++.++-...|+..+...+...+ ..+..|++.+.|
T Consensus 137 NALLKtLEE---Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 137 NALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG 212 (647)
T ss_pred HHHHHHHHc---CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 889999873 3445667777888999999999998 77999999999999999988866555433 235566666555
Q ss_pred CcHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEA 423 (489)
Q Consensus 411 ~sg~Di~~l~~~A 423 (489)
+.++.-.++..+
T Consensus 213 -s~R~Al~lldqa 224 (647)
T PRK07994 213 -SMRDALSLTDQA 224 (647)
T ss_pred -CHHHHHHHHHHH
Confidence 455555555443
No 66
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=8.5e-16 Score=170.79 Aligned_cols=191 Identities=20% Similarity=0.228 Sum_probs=133.4
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++++.+|++|+|++.+++.|+.++... ..++.+||+||||||||++|+++|+.+++.
T Consensus 6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 345677889999999999999999887542 234567999999999999999999998653
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.+++.+- ..-..++.+...+. .....|++|||+|.|. ...
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-------------~eA 135 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-------------RSS 135 (944)
T ss_pred CchHHHHHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------HHH
Confidence 122222110 11122344443332 2334699999999984 336
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
++.||..|+. .+..+.+|.+|+.+..+.+.+++|| ..+.|..++.++....|+..+...+...+. .+..|++.+.
T Consensus 136 qNALLKtLEE---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~ 211 (944)
T PRK14949 136 FNALLKTLEE---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAAN 211 (944)
T ss_pred HHHHHHHHhc---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6889999873 3344666667888888999999999 669999999999999888887665444332 3566666665
Q ss_pred CCcHHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAA 424 (489)
Q Consensus 410 G~sg~Di~~l~~~A~ 424 (489)
| +.+++-.++..+.
T Consensus 212 G-d~R~ALnLLdQal 225 (944)
T PRK14949 212 G-SMRDALSLTDQAI 225 (944)
T ss_pred C-CHHHHHHHHHHHH
Confidence 4 5566666665544
No 67
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=7.8e-16 Score=163.91 Aligned_cols=189 Identities=20% Similarity=0.225 Sum_probs=138.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------------
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------------- 267 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~------------- 267 (489)
+++.+.+|+||+|++.+++.|+..+.. ...++++||+||+|+|||++|+.+|+.++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 467788999999999999999987654 23457899999999999999999999763
Q ss_pred -----------CcEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHH
Q 011305 268 -----------TTFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 332 (489)
Q Consensus 268 -----------~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 332 (489)
..++++++++- ..-..++.+.+.+.. ..+.|++|||+|.+.. ..++
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------~A~N 134 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------SAFN 134 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-------------HHHH
Confidence 23456665432 122345555555432 2357999999988743 2467
Q ss_pred HHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCC
Q 011305 333 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY 411 (489)
Q Consensus 333 ~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~ 411 (489)
.|+..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+...+...+. .+..+++.+.|
T Consensus 135 aLLK~LEe---Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G- 209 (491)
T PRK14964 135 ALLKTLEE---PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG- 209 (491)
T ss_pred HHHHHHhC---CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888874 3344667777788888999999999 668999999999999999988877765443 35666776654
Q ss_pred cHHHHHHHHHHHH
Q 011305 412 SGSDIRLVSKEAA 424 (489)
Q Consensus 412 sg~Di~~l~~~A~ 424 (489)
+.+++..++..+.
T Consensus 210 slR~alslLdqli 222 (491)
T PRK14964 210 SMRNALFLLEQAA 222 (491)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665544
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.68 E-value=1.5e-15 Score=160.25 Aligned_cols=154 Identities=24% Similarity=0.376 Sum_probs=113.2
Q ss_pred cCCCCCCCccccCcHHHHHH---HHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 201 RGSPDVKWESIKGLENAKRL---LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~---L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
+..++.++++++|++.+... +...+.. ....+++|+||||||||++|+++|+.++.+++.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 34567789999999999666 7776643 12358999999999999999999999999999998764
Q ss_pred hhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 278 VVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
. ....++.++..+. .....||||||+|.+... .++.|+..++. . .+++|++
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~----~-~iilI~a 126 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVED----G-TITLIGA 126 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhc----C-cEEEEEe
Confidence 3 1223444444442 224589999999988532 33556666652 2 2455554
Q ss_pred e-CCC-CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC
Q 011305 354 T-NLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 354 T-n~p-~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
| ..+ ..+++++++|| ..+.++.++.++...+++..+..
T Consensus 127 tt~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 127 TTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred CCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 4 333 57899999999 67899999999999999987754
No 69
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.3e-15 Score=166.33 Aligned_cols=191 Identities=19% Similarity=0.208 Sum_probs=136.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++++.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.++++
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 345678889999999999999999987641 335789999999999999999999987543
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.++..+ ......++.++..+. .....|++|||+|.+.. ..
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-------------~A 135 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-------------SA 135 (709)
T ss_pred ccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-------------HH
Confidence 22232211 112234555555432 12347999999987732 24
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
.+.|++.|+. ....+.+|.+|+++..+...+++|| ..+.|+.++.++....|+..+...+...+. .+..|++.+.
T Consensus 136 ~NALLKtLEE---Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 136 FNAMLKTLEE---PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA 211 (709)
T ss_pred HHHHHHHHHh---CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 5678888873 2344667778888999999999999 668899999999999999998877665443 3566666664
Q ss_pred CCcHHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAA 424 (489)
Q Consensus 410 G~sg~Di~~l~~~A~ 424 (489)
.+.+++..++..+.
T Consensus 212 -GslRdAlnLLDqai 225 (709)
T PRK08691 212 -GSMRDALSLLDQAI 225 (709)
T ss_pred -CCHHHHHHHHHHHH
Confidence 45566666665444
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.5e-15 Score=161.17 Aligned_cols=191 Identities=20% Similarity=0.241 Sum_probs=138.5
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++.+.+|++++|++.+++.|+..+.. ...++++||+||||||||++|+++|+.++..
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 44567888999999999999999886644 1235789999999999999999999998642
Q ss_pred -------------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHH
Q 011305 270 -------------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEA 326 (489)
Q Consensus 270 -------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~ 326 (489)
++++++.+ ......++.+++.+.. ....|++|||+|.+..
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~----------- 142 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK----------- 142 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------
Confidence 22222211 1123455666665543 2346999999998842
Q ss_pred HHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHH
Q 011305 327 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLV 405 (489)
Q Consensus 327 ~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La 405 (489)
..++.|+..++. .+..+++|.+|+.++.+.+++++|+ ..+.+..++.++...+++..+...+...+. .+..++
T Consensus 143 --~a~naLLk~LEe---pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 143 --GAFNALLKTLEE---PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred --HHHHHHHHHHhh---cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 245678887763 3445667777888889999999999 568999999999999999999877665443 356677
Q ss_pred HHhcCCcHHHHHHHHHHHH
Q 011305 406 ERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 406 ~~t~G~sg~Di~~l~~~A~ 424 (489)
..+.| +.+++-.++..+.
T Consensus 217 ~~s~G-slR~al~~Ldkai 234 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAA 234 (507)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 76665 6666666665554
No 71
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=2.3e-15 Score=157.21 Aligned_cols=187 Identities=16% Similarity=0.200 Sum_probs=128.2
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 269 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~----------------- 269 (489)
.|++|+|++.+++.|+..+.....++..+. ...++++||+||||+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999999987554332222 2346789999999999999999999987443
Q ss_pred ------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011305 270 ------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (489)
Q Consensus 270 ------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld 339 (489)
+..+.... . .-.-..++.+++.+.. ....|++|||+|.+... ..+.|++.|+
T Consensus 81 ~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE 142 (394)
T PRK07940 81 AGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE 142 (394)
T ss_pred cCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh
Confidence 11222111 0 0122345666665543 23469999999999533 3467888887
Q ss_pred CCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHH
Q 011305 340 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV 419 (489)
Q Consensus 340 g~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l 419 (489)
.. ... +++|.+|++++.+.++++||+ ..+.|+.|+.++..+++.... +.. ......++..+.|..+..+..+
T Consensus 143 ep--~~~-~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 143 EP--PPR-TVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred cC--CCC-CeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 32 233 445556666899999999999 679999999999888876422 222 2335567888888887666554
Q ss_pred HH
Q 011305 420 SK 421 (489)
Q Consensus 420 ~~ 421 (489)
..
T Consensus 215 ~~ 216 (394)
T PRK07940 215 TD 216 (394)
T ss_pred cC
Confidence 43
No 72
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2e-15 Score=163.44 Aligned_cols=191 Identities=19% Similarity=0.221 Sum_probs=134.1
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++.+.+|++|+|++.+++.|...+... ..++.+||+||||+|||++|+.+|+.+++.
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 345667889999999999999999887541 234678999999999999999999998642
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.++++. ...-..++.+...+.. ....|++|||+|.+.. ..
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-------------~a 135 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-------------SA 135 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-------------HH
Confidence 22333221 1122345555555432 2346999999998843 24
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
.+.|+..++. .+..+.+|.+|+++..+.+.+++|+ ..+.|+.++.++-...+...+...+...+. .+..+++.+.
T Consensus 136 ~naLLK~LEe---pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~ 211 (527)
T PRK14969 136 FNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA 211 (527)
T ss_pred HHHHHHHHhC---CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5778888874 3345667777788888888899999 779999999999998888888766554333 3455666555
Q ss_pred CCcHHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAA 424 (489)
Q Consensus 410 G~sg~Di~~l~~~A~ 424 (489)
| +.+++..++..+.
T Consensus 212 G-slr~al~lldqai 225 (527)
T PRK14969 212 G-SMRDALSLLDQAI 225 (527)
T ss_pred C-CHHHHHHHHHHHH
Confidence 3 5556655555443
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=99.65 E-value=4.3e-15 Score=151.63 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=128.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~v 273 (489)
+.+++.+.+|++++|++++++.|+.++... ...++||+||||||||++|+++|+++. ..++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 456778899999999999999998876431 124799999999999999999999983 346677
Q ss_pred eccchhhhhccchHHHHHHHHHH-HH------hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCC
Q 011305 274 SASSVVSKWRGDSEKLIKVLFEL-AR------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 346 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~~-A~------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~ 346 (489)
++++..+. ..++..... +. ...+.|++|||+|.+... .++.|+..++... .
T Consensus 71 n~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~---~ 128 (319)
T PLN03025 71 NASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-------------AQQALRRTMEIYS---N 128 (319)
T ss_pred cccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-------------HHHHHHHHHhccc---C
Confidence 76654221 122222221 11 123579999999998543 2455666665332 2
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHH
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~ 421 (489)
.+.+|.+||.++.+.+++++|+ ..+.|+.|+.++....++..+...+...+ ..++.++..+.| |++.+++
T Consensus 129 ~t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln 199 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALN 199 (319)
T ss_pred CceEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 2446668888888999999999 57999999999999999998877665533 235556665543 5544444
No 74
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.1e-15 Score=164.65 Aligned_cols=189 Identities=17% Similarity=0.226 Sum_probs=134.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|||||++|+++|+.+++
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 345678889999999999999999987542 23467899999999999999999999864
Q ss_pred -------------------cEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhH
Q 011305 269 -------------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHE 325 (489)
Q Consensus 269 -------------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~ 325 (489)
.++.+++.+- ..-..++.+.+.+.. ....|++|||+|.|...
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~--------- 139 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT--------- 139 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH---------
Confidence 1333333210 112234555544332 22469999999998533
Q ss_pred HHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHH
Q 011305 326 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLL 404 (489)
Q Consensus 326 ~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~L 404 (489)
..+.|+..++. .+..+.+|.+|+++..+.+.+++|+ ..+.|..++.++....++..+...+...+. .+..|
T Consensus 140 ----a~NaLLKtLEE---PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~L 211 (618)
T PRK14951 140 ----AFNAMLKTLEE---PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLL 211 (618)
T ss_pred ----HHHHHHHhccc---CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35678888863 3444666777788888888999999 779999999999999999888776665443 35667
Q ss_pred HHHhcCCcHHHHHHHHHH
Q 011305 405 VERTEGYSGSDIRLVSKE 422 (489)
Q Consensus 405 a~~t~G~sg~Di~~l~~~ 422 (489)
++.+.| +.+++..++..
T Consensus 212 a~~s~G-slR~al~lLdq 228 (618)
T PRK14951 212 ARAARG-SMRDALSLTDQ 228 (618)
T ss_pred HHHcCC-CHHHHHHHHHH
Confidence 776665 55555555443
No 75
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.65 E-value=4.7e-15 Score=151.62 Aligned_cols=191 Identities=20% Similarity=0.245 Sum_probs=127.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~v 273 (489)
+.+++.+.+|++++|++.+++.|...+... ...++||+||||||||++|+++++++. .+++++
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 455677888999999999999999877431 123799999999999999999999883 457888
Q ss_pred eccchhhhhc-------------cc-------hHHHHHHHHHHHHh-----cCCcEEEEchhhhHHhhhcccchhhHHHH
Q 011305 274 SASSVVSKWR-------------GD-------SEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASR 328 (489)
Q Consensus 274 ~~s~l~~~~~-------------g~-------~~~~l~~lf~~A~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~ 328 (489)
+++++..... +. ....++.+...... ..+.+|+|||+|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~------------ 140 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED------------ 140 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH------------
Confidence 8876542210 00 11223333323222 23469999999987432
Q ss_pred HHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHH
Q 011305 329 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVER 407 (489)
Q Consensus 329 ~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~ 407 (489)
..+.|...++... .. ..+|.+++.+..+.+.+.+|+ ..+.+++|+.++...+++..+...+...+ ..++.+++.
T Consensus 141 -~~~~L~~~le~~~--~~-~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~ 215 (337)
T PRK12402 141 -AQQALRRIMEQYS--RT-CRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215 (337)
T ss_pred -HHHHHHHHHHhcc--CC-CeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2234555555332 22 334556666777788899998 56899999999999999998877665533 235566665
Q ss_pred hcCCcHHHHHHHHHH
Q 011305 408 TEGYSGSDIRLVSKE 422 (489)
Q Consensus 408 t~G~sg~Di~~l~~~ 422 (489)
+. +|++.+++.
T Consensus 216 ~~----gdlr~l~~~ 226 (337)
T PRK12402 216 AG----GDLRKAILT 226 (337)
T ss_pred cC----CCHHHHHHH
Confidence 53 355554443
No 76
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=4.6e-15 Score=166.99 Aligned_cols=192 Identities=20% Similarity=0.159 Sum_probs=132.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++.+.+|++|+|++.+++.|+..+.. ...++.+||+||+|||||++|+.+|+.+++.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 4567888999999999999999988754 1233568999999999999999999998641
Q ss_pred ----------------EEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHH
Q 011305 270 ----------------FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (489)
Q Consensus 270 ----------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 333 (489)
++.++..+. ..+.+.......++.........|+||||+|.|.. ...+.
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~--~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------~a~Na 139 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH--GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------QGFNA 139 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------HHHHH
Confidence 233333211 01111222222222222234557999999999853 24678
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCc
Q 011305 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYS 412 (489)
Q Consensus 334 LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~s 412 (489)
||+.|+.. ...+++|++|++++.|.+.|++|+ ..+.|..++.++...+|+..+...+...+.+ +..++..+.| +
T Consensus 140 LLK~LEEp---P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 140 LLKIVEEP---PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 89988743 344666777788888999999999 6689999999999999999887766654433 4555555554 5
Q ss_pred HHHHHHHHHH
Q 011305 413 GSDIRLVSKE 422 (489)
Q Consensus 413 g~Di~~l~~~ 422 (489)
.+++..+++.
T Consensus 215 lR~Al~eLEK 224 (824)
T PRK07764 215 VRDSLSVLDQ 224 (824)
T ss_pred HHHHHHHHHH
Confidence 5555554444
No 77
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.8e-15 Score=160.64 Aligned_cols=190 Identities=19% Similarity=0.166 Sum_probs=131.8
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|||||++|+++|+.+++.
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 35678889999999999999999987541 234568999999999999999999988631
Q ss_pred ----------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHH
Q 011305 270 ----------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRR 329 (489)
Q Consensus 270 ----------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~ 329 (489)
++.++++... .-..++.+.+.+. .....|++|||+|.+.. .
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-------------~ 133 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-------------A 133 (584)
T ss_pred cHHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-------------H
Confidence 3333332110 1122333333322 23346999999998843 2
Q ss_pred HHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh
Q 011305 330 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT 408 (489)
Q Consensus 330 i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t 408 (489)
.++.||..|+. .+..+++|.+|+.++.+.+++++|+ ..+.|..++.++..+.++.++...+...+.+ +..++...
T Consensus 134 A~NALLK~LEE---pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s 209 (584)
T PRK14952 134 GFNALLKIVEE---PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG 209 (584)
T ss_pred HHHHHHHHHhc---CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 56788888873 3345667777788899999999998 6699999999999999998887776554433 34444433
Q ss_pred cCCcHHHHHHHHHHHH
Q 011305 409 EGYSGSDIRLVSKEAA 424 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~ 424 (489)
|.+.+++..++....
T Consensus 210 -~GdlR~aln~Ldql~ 224 (584)
T PRK14952 210 -GGSPRDTLSVLDQLL 224 (584)
T ss_pred -CCCHHHHHHHHHHHH
Confidence 445555555555443
No 78
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.64 E-value=1.4e-14 Score=142.57 Aligned_cols=187 Identities=21% Similarity=0.252 Sum_probs=135.1
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------cE
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------TF 270 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~------~~ 270 (489)
+.+.+++.+.+|+++.|++.+++.|+..+.. ....++|||||||||||+.|+++|+++.. .+
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 3456677888999999999999999988754 12358999999999999999999999965 24
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHh---------cC-CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARH---------HA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~---------~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg 340 (489)
...++++..+..++ ..+++. |..... .+ +.|++|||+|.+..+ .+++|...|+.
T Consensus 92 l~lnaSderGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~ 155 (346)
T KOG0989|consen 92 LELNASDERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTMED 155 (346)
T ss_pred hhhcccccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHhc
Confidence 55566665544322 112221 222211 11 269999999999644 56778888885
Q ss_pred CccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHH
Q 011305 341 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLV 419 (489)
Q Consensus 341 ~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l 419 (489)
.. ..+.+|..||.++.+...+.||+.+ +.|+....+.....|+....+.+...+.+ ++.+++.++| |++.+
T Consensus 156 ~s---~~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~A 227 (346)
T KOG0989|consen 156 FS---RTTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRA 227 (346)
T ss_pred cc---cceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHH
Confidence 43 3356777899999999999999965 77777777777888888888888876654 5667776655 55543
No 79
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.64 E-value=3.9e-15 Score=153.46 Aligned_cols=187 Identities=21% Similarity=0.249 Sum_probs=130.5
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++++.+|++++|++.+++.+.+.+.. ...++.+||+||||+|||++|+++++.+..+
T Consensus 5 ~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3456788999999999999999987754 1234679999999999999999999987432
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHHhc----CCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.+++.+ ......++.++..+... ...|++|||+|.+.. ...
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-------------~~~ 134 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-------------SAF 134 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-------------HHH
Confidence 33333321 11223455666655432 235999999998742 235
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
+.|+..++. .+..+++|.+|++++.+.+++++|+ ..+.++.|+.++...+++..+...+...+ ..+..+++.+.|
T Consensus 135 ~~Ll~~le~---~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 135 NALLKTLEE---PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHHHhC---CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 667787764 2334666777888888889999999 56899999999999999998877665433 234556665554
Q ss_pred CcHHHHHHHHH
Q 011305 411 YSGSDIRLVSK 421 (489)
Q Consensus 411 ~sg~Di~~l~~ 421 (489)
+.+.+...++
T Consensus 211 -~~~~a~~~le 220 (355)
T TIGR02397 211 -SLRDALSLLD 220 (355)
T ss_pred -ChHHHHHHHH
Confidence 4444444333
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=5.1e-15 Score=159.73 Aligned_cols=190 Identities=16% Similarity=0.186 Sum_probs=129.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++++.+|++++|++.+++.|...+... ..++.+||+||+|+|||++|+.+|+.++.
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 345667889999999999999999877541 23456899999999999999999998853
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.++.+++..- . .-..++.+.+.+. .....|++|||+|.+.. ..
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-------------~a 135 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-------------QS 135 (546)
T ss_pred ccHHHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-------------HH
Confidence 2333433211 0 1122333333332 23456999999998843 25
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
++.|+..++. .++.+.+|.+|+++..+.+.+++|+ ..+.|..++.++....++..+...+...+. .+..++..+.
T Consensus 136 ~naLLK~LEe---pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 136 FNALLKTLEE---PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK 211 (546)
T ss_pred HHHHHHHHhc---CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6788888873 3344556667777888888899999 779999999999988888887766554333 3455665554
Q ss_pred CCcHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEA 423 (489)
Q Consensus 410 G~sg~Di~~l~~~A 423 (489)
.+.+++-.++..+
T Consensus 212 -GdlR~alnlLek~ 224 (546)
T PRK14957 212 -GSLRDALSLLDQA 224 (546)
T ss_pred -CCHHHHHHHHHHH
Confidence 3445554444443
No 81
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3.6e-15 Score=160.32 Aligned_cols=178 Identities=21% Similarity=0.286 Sum_probs=127.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+..++.+.+|++|+|++.+++.|+..+... ..++.+||+||||||||++|+++|+.+...
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~ 72 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE 72 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 345678899999999999999999887641 234567999999999999999999988531
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.+++++- ..-..++.+...+. ...+.|++|||+|.+. ...+
T Consensus 73 C~sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------~~a~ 133 (504)
T PRK14963 73 CESCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------KSAF 133 (504)
T ss_pred ChhhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------HHHH
Confidence 444444311 12233444433332 2345799999998763 2346
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..++. ....+++|.+|+.+..+.+.+.+|+. .+.|+.|+.++....++..+...+...+. .+..++..+.|
T Consensus 134 naLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 134 NALLKTLEE---PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHHh---CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 678888763 33346667778888999999999994 69999999999999999988776665333 35556665554
No 82
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=3.9e-15 Score=162.25 Aligned_cols=190 Identities=22% Similarity=0.255 Sum_probs=135.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++.+.+|++++|++.+++.|+..+... ..++.+||+||+|||||++|+.+|+.+++
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 345678889999999999999999887641 23467999999999999999999998853
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.++.++++. +..-..++.+...+.. ....|++|||+|.|.. ..
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------~a 135 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------GA 135 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HH
Confidence 234444321 1223345555555442 2346999999998842 24
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
.+.|+..++. .+..+++|.+|+.++.+.+.+++|+. .+.|+.|+.++....++..+...+...+. .+..++..+.
T Consensus 136 ~naLLKtLEe---pp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~ 211 (559)
T PRK05563 136 FNALLKTLEE---PPAHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAE 211 (559)
T ss_pred HHHHHHHhcC---CCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5778888873 33446666677788999999999994 58899999999999999988777665443 3555666665
Q ss_pred CCcHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEA 423 (489)
Q Consensus 410 G~sg~Di~~l~~~A 423 (489)
| +.++...++..+
T Consensus 212 G-~~R~al~~Ldq~ 224 (559)
T PRK05563 212 G-GMRDALSILDQA 224 (559)
T ss_pred C-CHHHHHHHHHHH
Confidence 4 555555544433
No 83
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.63 E-value=1.4e-14 Score=147.22 Aligned_cols=162 Identities=17% Similarity=0.127 Sum_probs=115.4
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+.+++++.+|++++|++.+++.++..+.. ...++.+||+||||+|||++|++++++++.+++.+++++
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~- 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD- 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence 45678889999999999999999988753 123456777999999999999999999999999999876
Q ss_pred hhhhccchHHHHHHHHHHHH-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+. .......+........ ...+.||+|||+|.+... .....|...++.. ...+.+|++||.+
T Consensus 79 -~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le~~---~~~~~~Ilt~n~~ 141 (316)
T PHA02544 79 -CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY---SKNCSFIITANNK 141 (316)
T ss_pred -cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------------HHHHHHHHHHHhc---CCCceEEEEcCCh
Confidence 21 2222222222221111 124689999999987221 1123344445432 2335677899999
Q ss_pred CcccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 358 WELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 358 ~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
..+.+++++|| ..+.++.|+.+++..+++.++
T Consensus 142 ~~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 142 NGIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred hhchHHHHhhc-eEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999 468999999999988877543
No 84
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=6e-15 Score=160.32 Aligned_cols=181 Identities=17% Similarity=0.208 Sum_probs=125.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+..++.+.+|++|+|++.+++.|...+... .-.+.+||+||+|||||++|+.+|+.+...
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 445678889999999999999999887541 223689999999999999999999998642
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHH-HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFEL-ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~-A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 333 (489)
++.+++..- ..+.... .+...+.. .......||+|||+|.+.. ..++.
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~~--~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~-------------~a~na 138 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGASN--RGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTR-------------EAFNA 138 (624)
T ss_pred ccHHHHHHhcCCCCceEEEecccc--cCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCH-------------HHHHH
Confidence 444443211 1111111 12222221 1223447999999998843 24577
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 334 LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
|+..++. ....+++|++|+.+..+.+.+++|+ ..+.|+.++.++...+|+..+...+...+. .++.+++.+.|
T Consensus 139 LLk~LEE---P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 139 LLKTLEE---PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHhhc---cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888874 2334667778888888988999999 568999999999999999887666554332 35556665554
No 85
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=7.3e-15 Score=158.91 Aligned_cols=189 Identities=17% Similarity=0.203 Sum_probs=131.4
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++++.+|++++|++.+++.|...+.. ...++++||+||+|+|||++|+++|+.+.+
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 45567888999999999999999987743 123478999999999999999999998742
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.++.++++.. ..-..++.+...+.. ....|++|||+|.+... .
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-------------A 135 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-------------A 135 (605)
T ss_pred ccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-------------H
Confidence 2333433211 112234444443332 23469999999988422 3
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~ 409 (489)
.+.|+..++. .+..+++|.+|+.+..+.+++++|+ ..+.|+.|+.++....++..+...+...+ ..+..++..+.
T Consensus 136 ~NaLLKtLEE---Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~ 211 (605)
T PRK05896 136 WNALLKTLEE---PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHHHHHh---CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5678888873 3334667777888899999999999 46999999999999999988876654433 23555666655
Q ss_pred CCcHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKE 422 (489)
Q Consensus 410 G~sg~Di~~l~~~ 422 (489)
| +.+++..+++.
T Consensus 212 G-dlR~AlnlLek 223 (605)
T PRK05896 212 G-SLRDGLSILDQ 223 (605)
T ss_pred C-cHHHHHHHHHH
Confidence 4 44444444443
No 86
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.63 E-value=2.7e-14 Score=147.94 Aligned_cols=170 Identities=22% Similarity=0.261 Sum_probs=116.5
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEe
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNIS 274 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---------~~~i~v~ 274 (489)
+....++++|.++..+.|...+...+. ...+.+++|+||||||||++++++++++. ..+++++
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 344456899999999999988765332 12346799999999999999999998763 5788889
Q ss_pred ccchhhh----------hc--c--------chHHHHHHHHHHHH-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHH
Q 011305 275 ASSVVSK----------WR--G--------DSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (489)
Q Consensus 275 ~s~l~~~----------~~--g--------~~~~~l~~lf~~A~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 333 (489)
|....+. .. | ........++.... ...+.||+|||+|.+.... ..++..
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----------~~~L~~ 151 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----------DDLLYQ 151 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----------cHHHHh
Confidence 8654321 10 0 11223344444433 2446799999999997221 113344
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCC---cccHHHHhhcc-cccccCCCCHHHHHHHHHHhcC
Q 011305 334 LLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 334 LL~~ldg~~~~~~~viVIatTn~p~---~Ld~al~rRf~-~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
|+...+.....+.++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+.
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 4443221122335688888998885 47888989985 6789999999999999999875
No 87
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.8e-15 Score=158.73 Aligned_cols=164 Identities=26% Similarity=0.255 Sum_probs=129.5
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh---------h
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---------S 280 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~---------~ 280 (489)
|-.|++++|+++.|.+.-.....+ ..+.-+.|+||||+|||+|+++||+.++..|+.++...+. .
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 568999999999998876443322 1224578999999999999999999999999999875543 2
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC------------ccCCCcE
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELV 348 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~------------~~~~~~v 348 (489)
.|+|.....+-+-+..|....| +++|||||.+..+-... -.++||.-+|-- .-.-+.|
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD---------PaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD---------PASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC---------hHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 4788887787777888888886 89999999997663321 123455555411 1223569
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
++|+|+|..+.++.+|++|+ .+|.++-++.+|..+|-+.|+
T Consensus 468 mFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 99999999999999999999 779999999999999999987
No 88
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=7.2e-15 Score=160.81 Aligned_cols=187 Identities=19% Similarity=0.194 Sum_probs=132.8
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++.+.+|++|+|++.+++.|...+... ..++.+||+||+|+|||++|+++|+.++..
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 45678889999999999999999887541 234678999999999999999999998532
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++++++.+- ..-..++.+...+.. ....|++|||+|.+... ..
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~ 136 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-------------AF 136 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------HH
Confidence 333433221 112334555544432 23469999999988432 45
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..|+. .+..+++|.+|+.++.+.+.+++|+ ..+.|..++.++....+...+...+...+. .+..++..+.|
T Consensus 137 naLLk~LEe---pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 137 NALLKTLEE---PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHHHHHc---CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 788888873 3345667778888999999999999 579999999999888888888776655433 35556666665
Q ss_pred CcHHHHHHHHH
Q 011305 411 YSGSDIRLVSK 421 (489)
Q Consensus 411 ~sg~Di~~l~~ 421 (489)
+.+++..++.
T Consensus 213 -~lr~al~~Ld 222 (576)
T PRK14965 213 -SMRDSLSTLD 222 (576)
T ss_pred -CHHHHHHHHH
Confidence 3344444443
No 89
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.62 E-value=5.3e-15 Score=168.06 Aligned_cols=195 Identities=21% Similarity=0.307 Sum_probs=139.9
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 011305 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (489)
Q Consensus 195 ~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------- 266 (489)
..+.+.....+-++++++|++...+++.+.+.. ....+++|+||||||||++|+.+|+.+
T Consensus 173 ~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~ 240 (852)
T TIGR03345 173 YTTDLTAQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240 (852)
T ss_pred HhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence 445555556677899999999987777665532 223689999999999999999999987
Q ss_pred --CCcEEEEeccchh--hhhccchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 267 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 267 --~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
+.+++.++.+.+. ..+.|+.+..++.++..+.. ..+.||||||++.+.+.+...+. .+ ..+.|...+.
T Consensus 241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d----~~n~Lkp~l~-- 313 (852)
T TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GD----AANLLKPALA-- 313 (852)
T ss_pred ccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-cc----HHHHhhHHhh--
Confidence 3557888887765 36889999999999998864 45789999999999876432111 11 1122333332
Q ss_pred ccCCCcEEEEEEeCCC-----CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-----CCCCHHHHHHHhcCC
Q 011305 342 TQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERTEGY 411 (489)
Q Consensus 342 ~~~~~~viVIatTn~p-----~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-----~~~dl~~La~~t~G~ 411 (489)
+ +.+.+|+||+.. ..+|++|.|||. .|.++.|+.+++..||+.+....... .+..+..++..+.+|
T Consensus 314 --~-G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 314 --R-GELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred --C-CCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 3 346788888753 348999999995 79999999999999987766443221 223356667777666
Q ss_pred c
Q 011305 412 S 412 (489)
Q Consensus 412 s 412 (489)
.
T Consensus 390 i 390 (852)
T TIGR03345 390 I 390 (852)
T ss_pred c
Confidence 4
No 90
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.62 E-value=7.4e-15 Score=154.14 Aligned_cols=220 Identities=21% Similarity=0.292 Sum_probs=139.5
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhc----ccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhcc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFT----GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG 284 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~----~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~g 284 (489)
.|+|++.+|+.|...+..+...-.... ....+..++||+||||||||++|+++|+.++.||+.++++.+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 389999999999877654322211100 11224578999999999999999999999999999999988753 5776
Q ss_pred ch-HHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhh-HHHHHHHHHHHHHhcCCc----------cCCCcE
Q 011305 285 DS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEH-EASRRLKTELLIQMDGLT----------QSDELV 348 (489)
Q Consensus 285 ~~-~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~-~~~~~i~~~LL~~ldg~~----------~~~~~v 348 (489)
.. +..+..++..+ ....++||||||+|.+...+....... .....+++.||+.|++.. ......
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 53 33444444322 234679999999999987633221111 112357889999998642 011224
Q ss_pred EEEEEeCCCC----------------------------------------------------cccHHHHhhcccccccCC
Q 011305 349 FVLAATNLPW----------------------------------------------------ELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 349 iVIatTn~p~----------------------------------------------------~Ld~al~rRf~~~i~~~~ 376 (489)
++|.|+|-.. .+.|+++.|++.++.|..
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~ 311 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEE 311 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCC
Confidence 4555544300 035667778888899999
Q ss_pred CCHHHHHHHHHH----hc-------CCCCCCCC---CCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHH
Q 011305 377 PDTEARRAMFES----LL-------PSQTGEES---LPYDLLVER--TEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 377 Pd~~eR~~IL~~----~l-------~~~~~~~~---~dl~~La~~--t~G~sg~Di~~l~~~A~~~a~r 429 (489)
.+.++..+|+.. .+ ...+.... .-++.|++. ..++-.+.|+.+++......+.
T Consensus 312 L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 312 LDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 999999888872 22 22222211 124556654 3455567777776666655444
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=8.4e-15 Score=161.30 Aligned_cols=195 Identities=18% Similarity=0.224 Sum_probs=133.5
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE---Eec
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN---ISA 275 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~---v~~ 275 (489)
+.+++++.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.+.++-.. -.|
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 445678899999999999999999988542 234678999999999999999999988543110 001
Q ss_pred c----------chh-hhhcc-chHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011305 276 S----------SVV-SKWRG-DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (489)
Q Consensus 276 s----------~l~-~~~~g-~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld 339 (489)
. ++. ....+ .....++.+.+.+.. ....|++|||+|.+... ..+.|+..|+
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------------A~NALLKtLE 143 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------------AFNALLKTLE 143 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------HHHHHHHHhh
Confidence 0 000 00000 123345666655543 33469999999988432 4678888887
Q ss_pred CCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHH
Q 011305 340 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRL 418 (489)
Q Consensus 340 g~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~ 418 (489)
. .+..+++|.+|+.++.+.+.+++||. .+.|..++.++....++..+...+...+.+ +..++..+.| +.+++..
T Consensus 144 E---PP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Als 218 (725)
T PRK07133 144 E---PPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALS 218 (725)
T ss_pred c---CCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3 34456677778889999999999994 799999999999999988877666544332 5556665554 4445444
Q ss_pred HHHH
Q 011305 419 VSKE 422 (489)
Q Consensus 419 l~~~ 422 (489)
++..
T Consensus 219 lLek 222 (725)
T PRK07133 219 IAEQ 222 (725)
T ss_pred HHHH
Confidence 4443
No 92
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.62 E-value=7.9e-15 Score=167.02 Aligned_cols=178 Identities=21% Similarity=0.314 Sum_probs=133.5
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 011305 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (489)
Q Consensus 195 ~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------- 266 (489)
....+.....+-.+++++|.+...+.+.+.+.. ....+++|+||||||||++|+++|..+
T Consensus 164 ~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~ 231 (857)
T PRK10865 164 YTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG 231 (857)
T ss_pred HhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchh
Confidence 445555556677899999999987777776533 223689999999999999999999988
Q ss_pred --CCcEEEEeccchh--hhhccchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 267 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 267 --~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
+.+++.++.+.+. .+|.|+.+..++.+|..... ..++||||||+|.+.+.....+ ..+. .+.|...+
T Consensus 232 l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d~----~~~lkp~l--- 303 (857)
T PRK10865 232 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDA----GNMLKPAL--- 303 (857)
T ss_pred hCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chhH----HHHhcchh---
Confidence 7889999888876 46889999999999987543 5678999999999987643221 1221 22222222
Q ss_pred ccCCCcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCC
Q 011305 342 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 395 (489)
Q Consensus 342 ~~~~~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~ 395 (489)
.+ +.+.+|++|+..+ .+|+++.|||. .|.++.|+.+++..|++.+......
T Consensus 304 -~~-g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 304 -AR-GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred -hc-CCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 23 3467888887765 48999999996 5889999999999999987755433
No 93
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.62 E-value=2.6e-14 Score=150.60 Aligned_cols=198 Identities=17% Similarity=0.274 Sum_probs=126.6
Q ss_pred CCCCCcc-ccCcHH--HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEec
Q 011305 204 PDVKWES-IKGLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 275 (489)
Q Consensus 204 ~~~~~~d-liG~e~--~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~ 275 (489)
+..+|++ ++|.++ +...+.+.... + .....+++||||+|+|||+|++++++++ +..++++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~----~------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAEN----P------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhC----c------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 4567888 556443 33444443322 1 1223579999999999999999999987 577899998
Q ss_pred cchhhhhccchHH-HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 276 SSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 276 s~l~~~~~g~~~~-~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
.++...+...... ....+....+ .+.+|+|||+|.+.+... ....++..++.....+. .+||+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~~~~~~~-~iiits~ 240 (405)
T TIGR00362 175 EKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKER-----------TQEEFFHTFNALHENGK-QIVLTSD 240 (405)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC-CEEEecC
Confidence 8876554322111 1112222222 357999999999864421 12334444443322332 3455555
Q ss_pred CCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011305 355 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQ 426 (489)
Q Consensus 355 n~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~ 426 (489)
..|.. +++.+++||. ..+.++.|+.++|..|++..+...+...+. .++.||+...+ +.+++..+++.....
T Consensus 241 ~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 241 RPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAY 317 (405)
T ss_pred CCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 55544 6688999996 468999999999999999999877665443 35667776664 667777766655433
No 94
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.61 E-value=1.9e-14 Score=153.59 Aligned_cols=199 Identities=14% Similarity=0.239 Sum_probs=126.8
Q ss_pred CCCCCCcccc-CcH--HHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 011305 203 SPDVKWESIK-GLE--NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 274 (489)
Q Consensus 203 ~~~~~~~dli-G~e--~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~ 274 (489)
.+..+|++++ |.. .+...++++...+ .....+++||||||+|||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3566788854 532 2555555544321 1223579999999999999999999988 56789999
Q ss_pred ccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 275 ~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
+.++...+..........-|.... ..+.+|+|||+|.+.++.. ....++..++.....+. .+||+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~l~~~~~-~iiits~ 252 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKER-----------TQEEFFHTFNALHEAGK-QIVLTSD 252 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC-cEEEECC
Confidence 988766554332211111222211 2468999999999865421 12334444443333333 3455555
Q ss_pred CCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHh
Q 011305 355 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 355 n~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~ 425 (489)
..|.. +++++++||. ..+.+..|+.++|..|++..+...+...+. .++.||..+.| +.+++..++.....
T Consensus 253 ~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 253 RPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred CCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 55544 7789999995 478899999999999999998776554333 35666766654 56666666665443
No 95
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.6e-15 Score=157.06 Aligned_cols=166 Identities=23% Similarity=0.287 Sum_probs=129.6
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh---------
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV--------- 279 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~--------- 279 (489)
+|-.|++++|+++.|++.-...+. ...++-+.|+||||+|||+++++||+.+|..|+.++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrg------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRG------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcc------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 467999999999999887643322 23346688999999999999999999999999999865443
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC------------ccCCCc
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDEL 347 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~------------~~~~~~ 347 (489)
..|+|.....+-+.+.......| +++|||+|.+...-+ +. -.++||..+|-- .-.-..
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~q--GD-------PasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQ--GD-------PASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCC--CC-------hHHHHHHhcChhhccchhhhccccccchhh
Confidence 24778877777777777777776 899999999983222 11 123455555421 222356
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcC
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
|++|||+|..+.++++|++|+ +.|.++-+..+|...|-+.|+-
T Consensus 555 VLFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred eEEEEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhh
Confidence 999999999999999999999 6799999999999999999984
No 96
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.60 E-value=2.4e-14 Score=143.26 Aligned_cols=157 Identities=22% Similarity=0.391 Sum_probs=106.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEec
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISA 275 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---~i~v~~ 275 (489)
+.+...+.+++|.+|++.+..+ ...+...++. ..-.+++||||||||||+|||.|+.....+ |+++++
T Consensus 128 LaermRPktL~dyvGQ~hlv~q-~gllrs~ieq--------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 128 LAERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ--------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred hhhhcCcchHHHhcchhhhcCc-chHHHHHHHc--------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 4445567789999999887655 2222222111 123579999999999999999999988666 777776
Q ss_pred cchhhhhccchHHHHHHHHHHHHh-----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 276 SSVVSKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
..- ..+.++.+|+.++. ....|||||||+.+... .++.||-.++ .+. |.+
T Consensus 199 t~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks-------------QQD~fLP~VE----~G~-I~l 253 (554)
T KOG2028|consen 199 TNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS-------------QQDTFLPHVE----NGD-ITL 253 (554)
T ss_pred ccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh-------------hhhcccceec----cCc-eEE
Confidence 442 33567778877764 23479999999988543 2344554443 333 445
Q ss_pred E-EEeCCC-CcccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 351 L-AATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 351 I-atTn~p-~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
| +||.+| -.|+.++++|| .++.+...+.+.-..||.+.+
T Consensus 254 IGATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred EecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHH
Confidence 5 555555 46999999999 556666777777778887744
No 97
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.60 E-value=2.2e-14 Score=161.44 Aligned_cols=227 Identities=17% Similarity=0.183 Sum_probs=151.2
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh---------
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--------- 280 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~--------- 280 (489)
+..|++++|+.+.+++....... ...+..++|+||||+|||++++.+|+.++.+++.++.+....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 48999999999998877533211 123357999999999999999999999999999998765421
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC------------ccCCCcE
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELV 348 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~------------~~~~~~v 348 (489)
.|.|.....+...+..+.... .||+|||+|.+....+. ...+.|+..+|.- ...-+.+
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 345554445555555544444 48999999999765321 1245677776631 1123568
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC-----CCCC---CCCC---HHHHHHH-hcCCcHHHH
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-----QTGE---ESLP---YDLLVER-TEGYSGSDI 416 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~-----~~~~---~~~d---l~~La~~-t~G~sg~Di 416 (489)
++|+|+|.. .+++++++|| ..+.++.++.++..+|.+.++.. .+.. ...+ ++.+++. +..+-.+.+
T Consensus 467 ~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~L 544 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSL 544 (784)
T ss_pred EEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHH
Confidence 899999887 5999999999 57999999999999999998841 1111 1111 3444432 334445777
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 417 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 417 ~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
+..++..+...+.+.+. .+. . ....|+.+++.+.|..-
T Consensus 545 eR~I~~i~r~~l~~~~~--~~~--------~-~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 545 EREISKLCRKAVKQLLL--DKS--------L-KHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHHHHHHHHHHh--cCC--------C-ceeeecHHHHHHHhCCC
Confidence 77777655555544321 100 0 11248999999988733
No 98
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.60 E-value=7.2e-14 Score=153.71 Aligned_cols=224 Identities=21% Similarity=0.221 Sum_probs=139.9
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEec
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISA 275 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~~ 275 (489)
..-+.|.|.++..++|...+...+.. ..+...++|+|+||||||++++.+.+++ ...+++|+|
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkg-------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQ-------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhc-------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 33478999999999999988665431 1222345799999999999999998876 255789999
Q ss_pred cchhhhhc----------------c-chHHHHHHHHHHHHh--cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHH
Q 011305 276 SSVVSKWR----------------G-DSEKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 336 (489)
Q Consensus 276 s~l~~~~~----------------g-~~~~~l~~lf~~A~~--~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~ 336 (489)
..+...+. | .....+..+|..... ....||+|||||.|.... ..+ |+.
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----------QDV---LYn 891 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----------QKV---LFT 891 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------HHH---HHH
Confidence 65432210 1 123455666665422 234699999999996531 122 333
Q ss_pred HhcCCccCCCcEEEEEEeCC---CCcccHHHHhhccc-ccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCC
Q 011305 337 QMDGLTQSDELVFVLAATNL---PWELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY 411 (489)
Q Consensus 337 ~ldg~~~~~~~viVIatTn~---p~~Ld~al~rRf~~-~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~ 411 (489)
.++........++||+++|. +..+++.+++||.. .+.|++++.+++.+||+..+.......+. .++.+|+.....
T Consensus 892 LFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~ 971 (1164)
T PTZ00112 892 LFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV 971 (1164)
T ss_pred HHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc
Confidence 33322334456888999986 45678899999864 48999999999999999988653211111 133333322211
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 412 SGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 412 sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
.+|+ |+++..++...++.. ...|+.+|+.+|+..+..+
T Consensus 972 -SGDA------------RKALDILRrAgEike------gskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 972 -SGDI------------RKALQICRKAFENKR------GQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred -CCHH------------HHHHHHHHHHHhhcC------CCccCHHHHHHHHHHHHhh
Confidence 2344 333333333222211 1248889999888776433
No 99
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2e-14 Score=154.00 Aligned_cols=190 Identities=21% Similarity=0.257 Sum_probs=128.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+..++++.+|++++|++.+++.|+..+... ..++.+||+||+|+|||++|+.+|+.++..
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 345677889999999999999999887541 234568999999999999999999988531
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+.. ..
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-------------~a 135 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-------------EA 135 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-------------HH
Confidence 22222211 0112223444443332 3347999999998742 23
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~ 409 (489)
.+.|+..++.. +..+++|.+|+.++.+.+++.+|+. .+.|+.|+.++...+++..+...+...+.+ +..++..+.
T Consensus 136 ~naLLk~LEep---p~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~ 211 (486)
T PRK14953 136 FNALLKTLEEP---PPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE 211 (486)
T ss_pred HHHHHHHHhcC---CCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 46788887632 3335555567778888899999995 689999999999999999888776554333 455666555
Q ss_pred CCcHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEA 423 (489)
Q Consensus 410 G~sg~Di~~l~~~A 423 (489)
| +.+++..+++.+
T Consensus 212 G-~lr~al~~Ldkl 224 (486)
T PRK14953 212 G-GMRDAASLLDQA 224 (486)
T ss_pred C-CHHHHHHHHHHH
Confidence 4 344444444433
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.4e-14 Score=156.50 Aligned_cols=196 Identities=18% Similarity=0.150 Sum_probs=133.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe----
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS---- 274 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~---- 274 (489)
+.+++.+.+|++|+|++.+++.|...+.. ...++.+||+||+|+|||++|+++|+.+++.....+
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 34557788999999999999999988754 234578999999999999999999999864321111
Q ss_pred ---------ccchhhh--------h--ccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 275 ---------ASSVVSK--------W--RGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 275 ---------~s~l~~~--------~--~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
|..+... . ....-..++.+.+.+.. ....|++|||+|.+.. ...
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-------------~a~ 149 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-------------AAF 149 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-------------HHH
Confidence 0000000 0 00112345556555542 2347999999998842 245
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..|+. ....+.+|.+|+.++.+.+.+++|+ ..+.|..++.++...+++..+.+.+...+. .++.++..+.|
T Consensus 150 naLLKtLEe---Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G 225 (598)
T PRK09111 150 NALLKTLEE---PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG 225 (598)
T ss_pred HHHHHHHHh---CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 778888873 3334556667778888888999999 569999999999999999988777665443 34556665654
Q ss_pred CcHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEA 423 (489)
Q Consensus 411 ~sg~Di~~l~~~A 423 (489)
+.+++..++..+
T Consensus 226 -dlr~al~~Ldkl 237 (598)
T PRK09111 226 -SVRDGLSLLDQA 237 (598)
T ss_pred -CHHHHHHHHHHH
Confidence 555555555443
No 101
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.4e-14 Score=155.71 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=131.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.+...
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 35677889999999999999999888541 234679999999999999999999998542
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+.. ..+
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-------------~a~ 136 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-------------SAF 136 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-------------HHH
Confidence 22222211 011223344433322 23457999999998842 246
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..++. .+..+++|.+|+.+..+.+++++|+. .+.|..++.++...+++..+...+...+. .+..++..+.|
T Consensus 137 naLLK~LEe---pp~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G 212 (563)
T PRK06647 137 NALLKTIEE---PPPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG 212 (563)
T ss_pred HHHHHhhcc---CCCCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 778888873 34456677777888889999999995 58999999999999999888666654333 35556665554
Q ss_pred CcHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEA 423 (489)
Q Consensus 411 ~sg~Di~~l~~~A 423 (489)
+.+++..++..+
T Consensus 213 -dlR~alslLdkl 224 (563)
T PRK06647 213 -SVRDAYTLFDQV 224 (563)
T ss_pred -CHHHHHHHHHHH
Confidence 555555555443
No 102
>PRK06893 DNA replication initiation factor; Validated
Probab=99.59 E-value=5.7e-14 Score=136.81 Aligned_cols=187 Identities=16% Similarity=0.171 Sum_probs=111.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
.+..+|++++|.++.. +...+... +.. .....++||||||||||+|++++|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~--~~~~~~~~------~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL--LLDSLRKN------FID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH--HHHHHHHH------hhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3567899998765432 11111110 111 112468999999999999999999986 4455556554221
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~ 359 (489)
. ....++... .+..+|+|||++.+.+... ....++..++.....+..++|++++..|..
T Consensus 80 ~--------~~~~~~~~~--~~~dlLilDDi~~~~~~~~-----------~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 80 Y--------FSPAVLENL--EQQDLVCLDDLQAVIGNEE-----------WELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred h--------hhHHHHhhc--ccCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 1 111222222 2347999999998864421 112344444433333333445555556665
Q ss_pred cc---HHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHH
Q 011305 360 LD---AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 360 Ld---~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~ 421 (489)
++ +.+++|+. ..+.++.|+.++|.+|++..+.......+.+ ++.|++...| +.+.+..++.
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~ 205 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALD 205 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHH
Confidence 44 89999874 5778999999999999998887665554433 4566666653 3344444333
No 103
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.59 E-value=3.3e-14 Score=137.48 Aligned_cols=191 Identities=20% Similarity=0.254 Sum_probs=137.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
...+.+++|+|.+..|+.|.+....++. ..|..++||+|++|||||+++|++..++ |..+++|...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 4567899999999999999988766553 3466899999999999999999999977 7888988877663
Q ss_pred hhhccchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-ccCCCcEEEEEEeCCC
Q 011305 280 SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLP 357 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~-~~~~~~viVIatTn~p 357 (489)
.+..++...+. ..+=|||+||+- + .. .+ .--..|-..++|- ...+.+|+|.+|+|+.
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs-F-e~-------~d---~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS-F-EE-------GD---TEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC-C-CC-------Cc---HHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 23344444442 234699999873 1 11 11 1123444556654 5678899999999875
Q ss_pred Cccc---------------------H--HHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHH----HHHHhc
Q 011305 358 WELD---------------------A--AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERTE 409 (489)
Q Consensus 358 ~~Ld---------------------~--al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~----La~~t~ 409 (489)
..+. + +|.+||...+.|..|+.++-.+|++.++...+...+. ++.. .|..-.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg 231 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG 231 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 3321 1 3455999999999999999999999999877776542 3322 344456
Q ss_pred CCcHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKE 422 (489)
Q Consensus 410 G~sg~Di~~l~~~ 422 (489)
|.||+--.+.++.
T Consensus 232 ~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 232 GRSGRTARQFIDD 244 (249)
T ss_pred CCCHHHHHHHHHH
Confidence 7788776666554
No 104
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.59 E-value=2.3e-14 Score=163.57 Aligned_cols=196 Identities=18% Similarity=0.307 Sum_probs=140.8
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------
Q 011305 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 266 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el------- 266 (489)
.....+.....+-.+++++|.+...+++.+.+.. ....+++|+||||||||++++++|..+
T Consensus 158 ~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~ 225 (852)
T TIGR03346 158 KYARDLTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPE 225 (852)
T ss_pred HHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCch
Confidence 3445555556677899999999987777776533 223689999999999999999999986
Q ss_pred ---CCcEEEEeccchh--hhhccchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011305 267 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (489)
Q Consensus 267 ---~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg 340 (489)
+.+++.++.+.+. .+|.|+.+..++.++..+.. ..+.||||||+|.+.+.....+. . ...+.|...+
T Consensus 226 ~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~-~----d~~~~Lk~~l-- 298 (852)
T TIGR03346 226 SLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA-M----DAGNMLKPAL-- 298 (852)
T ss_pred hhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch-h----HHHHHhchhh--
Confidence 6788898888775 46889999999999998865 35799999999999864322111 1 1222232222
Q ss_pred CccCCCcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHHhcC
Q 011305 341 LTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-----PYDLLVERTEG 410 (489)
Q Consensus 341 ~~~~~~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-----dl~~La~~t~G 410 (489)
.+ ..+.+|++|+..+ ..|+++.|||. .+.++.|+.+++..|++.+.........+ .+..++..+.+
T Consensus 299 --~~-g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~ 374 (852)
T TIGR03346 299 --AR-GELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR 374 (852)
T ss_pred --hc-CceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccc
Confidence 22 3477888887663 47999999995 48999999999999999876655443322 34445555555
Q ss_pred Cc
Q 011305 411 YS 412 (489)
Q Consensus 411 ~s 412 (489)
|.
T Consensus 375 yi 376 (852)
T TIGR03346 375 YI 376 (852)
T ss_pred cc
Confidence 53
No 105
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=5.4e-14 Score=149.69 Aligned_cols=176 Identities=19% Similarity=0.208 Sum_probs=123.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 269 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~----------- 269 (489)
+++.+.+|++|+|++.+++.|...+... ..++.+||+||||+|||++|+++|+.+...
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 4567789999999999999999887541 234679999999999999999999988432
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.+++... . .-..++.+.+.. ....+.|++|||+|.+... ..
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~ 138 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------AF 138 (451)
T ss_pred cHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------HH
Confidence 333332211 0 012222222222 2234579999999988432 35
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..++.. ++.+++|++|+.+..+.+++++|+ ..+.|+.++.++....++..+...+...+. .++.++..+.|
T Consensus 139 n~LLk~lEep---~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 139 NSLLKTLEEP---PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHHhhcC---CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6788888742 334666777788889999999999 568999999999999988887766554332 35556665554
No 106
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.7e-14 Score=153.56 Aligned_cols=192 Identities=18% Similarity=0.193 Sum_probs=134.0
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+..++++.+|++++|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.+..
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 345678899999999999999999887541 23466799999999999999999998732
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.++.+++++- ..-..++.+...... ....|++|||+|.+.. ..
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-------------~A 133 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-------------EA 133 (535)
T ss_pred ccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HH
Confidence 1333332210 012344444443221 2235999999988843 35
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
++.|+..++.. +..+.+|.+|+++..+.+++++|+ ..++|..++.++....++..+...+...+. .+..++....
T Consensus 134 ~NALLK~LEEp---p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~ 209 (535)
T PRK08451 134 FNALLKTLEEP---PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGN 209 (535)
T ss_pred HHHHHHHHhhc---CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 67788888743 334556667788899999999998 578999999999999998888776655433 3555666555
Q ss_pred CCcHHHHHHHHHHHHh
Q 011305 410 GYSGSDIRLVSKEAAM 425 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~ 425 (489)
| +.+++..++..+..
T Consensus 210 G-dlR~alnlLdqai~ 224 (535)
T PRK08451 210 G-SLRDTLTLLDQAII 224 (535)
T ss_pred C-cHHHHHHHHHHHHH
Confidence 4 66666666655443
No 107
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.58 E-value=1.2e-14 Score=165.40 Aligned_cols=197 Identities=18% Similarity=0.281 Sum_probs=142.9
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------
Q 011305 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 266 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el------- 266 (489)
...+.+......-.|++++|.++..+.+.+.+.. ....+++|+||||||||++|+.+|..+
T Consensus 164 ~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~ 231 (821)
T CHL00095 164 EFGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPD 231 (821)
T ss_pred HHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCCh
Confidence 3445555555566799999999999999987643 234689999999999999999999987
Q ss_pred ---CCcEEEEeccchh--hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 267 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 267 ---~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
+.+++.++++.+. .+|.|+.+..++.+++.+....++||||||+|.+.+.....+. .+ +.+-|...+.
T Consensus 232 ~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~~----~a~lLkp~l~-- 304 (821)
T CHL00095 232 ILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-ID----AANILKPALA-- 304 (821)
T ss_pred hhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-cc----HHHHhHHHHh--
Confidence 4789999998876 4788999999999999998878899999999999876432211 11 2222222222
Q ss_pred ccCCCcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCC----CCCC-CCCCHHHHHHHhcCC
Q 011305 342 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS----QTGE-ESLPYDLLVERTEGY 411 (489)
Q Consensus 342 ~~~~~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~----~~~~-~~~dl~~La~~t~G~ 411 (489)
+ +.+.+|++|+..+ ..|+++.+||. .+.++.|+.++...|++..... .... .+..+..++..+.+|
T Consensus 305 --r-g~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y 380 (821)
T CHL00095 305 --R-GELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY 380 (821)
T ss_pred --C-CCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence 2 3366777777653 47899999995 4789999999999998865422 1222 222355666777766
Q ss_pred cH
Q 011305 412 SG 413 (489)
Q Consensus 412 sg 413 (489)
.+
T Consensus 381 i~ 382 (821)
T CHL00095 381 IA 382 (821)
T ss_pred Cc
Confidence 54
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=6.6e-14 Score=147.09 Aligned_cols=178 Identities=19% Similarity=0.210 Sum_probs=121.3
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++.+.+|++|+|++.+++.|+..+.. ...++.+||+||||+|||++|+++|+.+...
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 34567788999999999999999887754 1234679999999999999999999998652
Q ss_pred -----------------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccch
Q 011305 270 -----------------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARS 322 (489)
Q Consensus 270 -----------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~ 322 (489)
++.+++.+. ..-..++.+.+.+. .....|++|||+|.+...
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------ 142 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------ 142 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH------
Confidence 111211110 11233444444432 122369999999988432
Q ss_pred hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CH
Q 011305 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PY 401 (489)
Q Consensus 323 ~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl 401 (489)
..+.|+..++. .++.+++|.+|+.+..+.+++++|+ ..+.|+.++.++....++..+...+...+. .+
T Consensus 143 -------~~~~LLk~LEe---p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al 211 (397)
T PRK14955 143 -------AFNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADAL 211 (397)
T ss_pred -------HHHHHHHHHhc---CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 34567777763 2334555556677788889999999 469999999999888888887665544332 34
Q ss_pred HHHHHHhcC
Q 011305 402 DLLVERTEG 410 (489)
Q Consensus 402 ~~La~~t~G 410 (489)
+.++..+.|
T Consensus 212 ~~l~~~s~g 220 (397)
T PRK14955 212 QLIGRKAQG 220 (397)
T ss_pred HHHHHHcCC
Confidence 556665554
No 109
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.58 E-value=2.3e-13 Score=142.41 Aligned_cols=227 Identities=20% Similarity=0.209 Sum_probs=143.1
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeccchh
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVV 279 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s~l~ 279 (489)
....+.++|.++..++|...+..... ...+.+++|+||||||||++++.+++++ +..+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 33457899999999999888755332 1234679999999999999999999987 5778999986432
Q ss_pred hh----------hcc--------chHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011305 280 SK----------WRG--------DSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (489)
Q Consensus 280 ~~----------~~g--------~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg 340 (489)
+. ..+ ........+.+.... ..+.||+|||+|.+..... ...+..|+..++.
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~~ 168 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHEE 168 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhhc
Confidence 21 111 122333344433332 3457999999999972211 1244556555543
Q ss_pred CccCCCcEEEEEEeCCCC---cccHHHHhhcc-cccccCCCCHHHHHHHHHHhcCCCCC--C-CCCCHHHHHHHhcCCcH
Q 011305 341 LTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTG--E-ESLPYDLLVERTEGYSG 413 (489)
Q Consensus 341 ~~~~~~~viVIatTn~p~---~Ld~al~rRf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~--~-~~~dl~~La~~t~G~sg 413 (489)
.. ..++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+..... . .+..++.+++.+.+.+|
T Consensus 169 ~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 169 YP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred cC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 32 23577888888764 47888888884 56899999999999999988753211 1 22235556666643222
Q ss_pred --HHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 414 --SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 414 --~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
+.+-.++..|+..+..+ + ...|+.+|+..|+..+.++
T Consensus 247 d~r~a~~ll~~a~~~a~~~------~------------~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 247 DARVAIDLLRRAGLIAERE------G------------SRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred cHHHHHHHHHHHHHHHHHc------C------------CCCcCHHHHHHHHHHHHHH
Confidence 22234455444433221 0 1238888888888776543
No 110
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.58 E-value=7.5e-14 Score=134.75 Aligned_cols=186 Identities=15% Similarity=0.180 Sum_probs=118.7
Q ss_pred CCCCcccc--CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 205 DVKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 205 ~~~~~dli--G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
..+|++++ +.+.+.+.+++++.. ..+.+++|+||+|||||++|+++++++ +.+++++++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 34577776 356677777776431 234789999999999999999999987 5788999998875
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~ 359 (489)
... ..++... ..+.+|+|||+|.+..... ....+...++.....+. .+|++++..+..
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~-----------~~~~L~~~l~~~~~~~~-~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQPE-----------WQEALFHLYNRVREAGG-RLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHHHcCC-eEEEECCCChHH
Confidence 332 1222222 2246999999998854310 01223333332222222 334444434433
Q ss_pred c---cHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHh
Q 011305 360 L---DAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 360 L---d~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~ 425 (489)
+ .+.+.+|+. ..+.+|.|+.+++..+++.++...+...+.+ +..|++. -+.+.+++..+++.+..
T Consensus 137 ~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 137 LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDR 207 (226)
T ss_pred CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 3 278888884 6789999999999999998776554443332 4556663 55577777777766554
No 111
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.58 E-value=1.1e-14 Score=150.84 Aligned_cols=249 Identities=26% Similarity=0.317 Sum_probs=161.5
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhcc-c
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D 285 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~g-~ 285 (489)
-|+|++++|+.+..++.....+......+ ..+++++||+||||||||++|+++|+.++.+|+.+++..+.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 58999999999988776543332221111 224589999999999999999999999999999999987763 6776 4
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 011305 286 SEKLIKVLFELA-------------------------------------------------------------------- 297 (489)
Q Consensus 286 ~~~~l~~lf~~A-------------------------------------------------------------------- 297 (489)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 555555555444
Q ss_pred -----------------------------------------------------------------------HhcCCcEEE
Q 011305 298 -----------------------------------------------------------------------RHHAPSTIF 306 (489)
Q Consensus 298 -----------------------------------------------------------------------~~~~p~VL~ 306 (489)
+..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012347999
Q ss_pred EchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-------CCCcEEEEEEe----CCCCcccHHHHhhcccccccC
Q 011305 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILVP 375 (489)
Q Consensus 307 IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-------~~~~viVIatT----n~p~~Ld~al~rRf~~~i~~~ 375 (489)
|||+|.++....+. .......-++..||..++|... ...++++||+. ..|+.|-|.|.-||+..+.+.
T Consensus 253 iDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 331 (441)
T TIGR00390 253 IDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQ 331 (441)
T ss_pred EEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 99999999764221 1112223488899999987532 23567788775 356778899999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHh-------HHHHHHHHHhhhhh----c
Q 011305 376 LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAM-------QPLRRLMVLLEGRQ----E 440 (489)
Q Consensus 376 ~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G----~sg~Di~~l~~~A~~-------~a~rR~~~~le~~~----~ 440 (489)
.++.++...||..--... -..+..+-+ +.| |+...++.+++.|.. .-+|++...++..- -
T Consensus 332 ~L~~edL~rILteP~nsL----ikQy~~Lf~-~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~f 406 (441)
T TIGR00390 332 ALTTDDFERILTEPKNSL----IKQYKALMK-TEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISF 406 (441)
T ss_pred CCCHHHHHHHhcCChhHH----HHHHHHHHh-hcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHh
Confidence 999999998874310000 000111111 222 566777777777764 22456555555432 2
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 441 VAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 441 ~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
..|.... ....|+.+.+...+...
T Consensus 407 e~p~~~~-~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 407 EAPDLSG-QNITIDADYVSKKLGAL 430 (441)
T ss_pred cCCCCCC-CEEEECHHHHHhHHHHH
Confidence 2233221 22347888877766544
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5.1e-14 Score=146.38 Aligned_cols=177 Identities=16% Similarity=0.215 Sum_probs=124.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--------- 270 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~--------- 270 (489)
.+++++.+|++++|++.+++.+...+... ..++++|||||||+|||++|+++++.+..+.
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 34677889999999999999999887541 2347899999999999999999999885421
Q ss_pred ---EEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc
Q 011305 271 ---FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 343 (489)
Q Consensus 271 ---i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~ 343 (489)
+.++... ......++.++..+.. ..+.||+|||+|.+... .++.++..++.
T Consensus 77 ~~~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-------------~~~~ll~~le~--- 134 (367)
T PRK14970 77 FNIFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-------------AFNAFLKTLEE--- 134 (367)
T ss_pred cceEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-------------HHHHHHHHHhC---
Confidence 2222111 1122455566655432 23469999999977432 34667777763
Q ss_pred CCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 344 SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 344 ~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
.+...++|.+|+.+..+.+++.+|+. .+.++.|+.++...++...+...+...+ ..++.++..+.|
T Consensus 135 ~~~~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 135 PPAHAIFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred CCCceEEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 23335566677778889999999994 5899999999999999988877666433 335556665543
No 113
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.57 E-value=1.8e-13 Score=133.89 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=112.6
Q ss_pred CCCCCcccc-C-cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 204 PDVKWESIK-G-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 204 ~~~~~~dli-G-~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
+..+|++++ | ...+...+..+... ....+++|+||||||||++++++++++ +..+.+++..+.
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 455688876 4 45566666654422 123589999999999999999999876 345666665543
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
... ...+.+.... ..+|+|||++.+.++.. ....|+..++.....+...+++++++.|.
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~~-----------~~~~lf~l~n~~~e~g~~~li~ts~~~p~ 143 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDEL-----------WEMAIFDLYNRILESGRTRLLITGDRPPR 143 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCCHH-----------HHHHHHHHHHHHHHcCCCeEEEeCCCChH
Confidence 211 1112222221 26899999998864421 11122233322222222234555555554
Q ss_pred c---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHH
Q 011305 359 E---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKE 422 (489)
Q Consensus 359 ~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~ 422 (489)
. +.+.++||+. ..+.+..|+.+++.++++..+...+...+.+ ++.|++...| +.+.+..++..
T Consensus 144 ~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 144 QLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred HcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 4 5799999995 6788999999999999998776655544433 5666766664 44455444443
No 114
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=7.8e-14 Score=148.19 Aligned_cols=197 Identities=18% Similarity=0.330 Sum_probs=123.2
Q ss_pred CCCCCCcccc-CcHH--HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 011305 203 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 274 (489)
Q Consensus 203 ~~~~~~~dli-G~e~--~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~ 274 (489)
.+..+|++++ |..+ +...+.+.... +. ...+++||||||+|||+|++++++++ +..+++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~----~~-------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKN----PG-------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhC----cC-------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4667788876 5433 33333333221 11 13569999999999999999999986 46788999
Q ss_pred ccchhhhhccchH-HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 275 ASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 275 ~s~l~~~~~g~~~-~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
+.++...+..... ..+.. |.......+.+|+|||++.+.+... ....++..++.....+. .+|+++
T Consensus 168 ~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~-----------~q~elf~~~n~l~~~~k-~iIits 234 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG-----------VQTELFHTFNELHDSGK-QIVICS 234 (440)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH-----------HHHHHHHHHHHHHHcCC-eEEEEC
Confidence 8887665432211 11222 2222223578999999998854311 12234444433322332 445555
Q ss_pred eCCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 354 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 354 Tn~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
...|.. +.+.+.+||. ..+.+..|+.++|..|++..+...+...+.+ ++.|++...| +.+++..++....
T Consensus 235 d~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~ 310 (440)
T PRK14088 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_pred CCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHH
Confidence 566654 5678899994 4667899999999999999987655554433 5666666654 5667776665543
No 115
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.57 E-value=4.7e-14 Score=147.56 Aligned_cols=218 Identities=21% Similarity=0.305 Sum_probs=137.8
Q ss_pred cccCcHHHHHHHHHHHHccccCchh----h--cccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hh
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKY----F--TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KW 282 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~----~--~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~ 282 (489)
.++|++++++.+...+......-.. . ........++||+||||||||++|+++|+.++.||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 4799999999998776432222111 0 001112468999999999999999999999999999999887653 57
Q ss_pred ccch-HHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhHH-HHHHHHHHHHHhcCCcc----------CCC
Q 011305 283 RGDS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ----------SDE 346 (489)
Q Consensus 283 ~g~~-~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~-~~~i~~~LL~~ldg~~~----------~~~ 346 (489)
+|.. +..+..++..+ ....++||||||+|.+..++.......+. ...+++.||+.|+|... ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7763 44444444322 23456899999999998764332211111 23578889999986531 113
Q ss_pred cEEEEEEeCCCC--------------------------------------------------cccHHHHhhcccccccCC
Q 011305 347 LVFVLAATNLPW--------------------------------------------------ELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 347 ~viVIatTn~p~--------------------------------------------------~Ld~al~rRf~~~i~~~~ 376 (489)
+.++|.|+|-.. .+.|+++.|++.++.|.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~p 317 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEK 317 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCC
Confidence 456777776510 034666678888889988
Q ss_pred CCHHHHHHHHHHh----cC-------CCCCCCC---CCHHHHHHH--hcCCcHHHHHHHHHHHHhHH
Q 011305 377 PDTEARRAMFESL----LP-------SQTGEES---LPYDLLVER--TEGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 377 Pd~~eR~~IL~~~----l~-------~~~~~~~---~dl~~La~~--t~G~sg~Di~~l~~~A~~~a 427 (489)
.+.++..+|+... ++ ..+.... .-++.|++. ...+-.+.|+.+++......
T Consensus 318 L~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 318 LDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 9999988888752 21 1122211 124455554 23455566666666555543
No 116
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.56 E-value=2e-13 Score=132.38 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=127.8
Q ss_pred CCCCCcccc--CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 204 PDVKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 204 ~~~~~~dli--G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
++.+|++++ +.+.+...++++... .....+++|+||+|||||++|+++++++ +.+++++++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 456788877 345566666665431 1234689999999999999999999976 678888888765
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
... + .....+.+|+|||+|.+... .+..|+..++........+++++++..|.
T Consensus 82 ~~~------------~--~~~~~~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 82 LLA------------F--DFDPEAELYAVDDVERLDDA-------------QQIALFNLFNRVRAHGQGALLVAGPAAPL 134 (227)
T ss_pred HHH------------H--hhcccCCEEEEeChhhcCch-------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 322 1 11223579999999987432 12334444443333333334443333332
Q ss_pred --cccHHHHhhc--ccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 359 --ELDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 359 --~Ld~al~rRf--~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
.+.+.+.+|| ...+.+++|+.+++..+++......+...+.+ ++.|++. ..-+.+++..+++.....+..
T Consensus 135 ~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~~~---- 209 (227)
T PRK08903 135 ALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTH-FRRDMPSLMALLDALDRYSLE---- 209 (227)
T ss_pred hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH----
Confidence 3568889898 46889999999999999988776555443332 4556663 334566666666653222111
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
..++||...+++++.
T Consensus 210 ---------------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 ---------------QKRPVTLPLLREMLA 224 (227)
T ss_pred ---------------hCCCCCHHHHHHHHh
Confidence 114589999988886
No 117
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.56 E-value=1.9e-13 Score=150.60 Aligned_cols=233 Identities=18% Similarity=0.200 Sum_probs=137.9
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 266 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el--------- 266 (489)
.+.+.....+.+|++++|++...+.+...+.. ..+.+++|+||||||||++|+++++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~ 208 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFA 208 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCccc
Confidence 34445556678899999999999988766532 123579999999999999999998765
Q ss_pred -CCcEEEEeccchhh-------hhccchHHH----HHHHHHH----------HHhcCCcEEEEchhhhHHhhhcccchhh
Q 011305 267 -KTTFFNISASSVVS-------KWRGDSEKL----IKVLFEL----------ARHHAPSTIFLDEIDAIISQRGEARSEH 324 (489)
Q Consensus 267 -~~~~i~v~~s~l~~-------~~~g~~~~~----l~~lf~~----------A~~~~p~VL~IDEiD~l~~~r~~~~~~~ 324 (489)
+.+|+.+++..+.. .+.+..... .+..+.. ......++|||||++.|...
T Consensus 209 ~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------- 280 (615)
T TIGR02903 209 EDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------- 280 (615)
T ss_pred CCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------
Confidence 45789999876521 111111000 0000000 01223479999999988544
Q ss_pred HHHHHHHHHHHHHhcCCc--------------------------cCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCC
Q 011305 325 EASRRLKTELLIQMDGLT--------------------------QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 378 (489)
Q Consensus 325 ~~~~~i~~~LL~~ldg~~--------------------------~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd 378 (489)
.+..|+..++.-. .....+++.+||+.++.+++++++||. .+.+++++
T Consensus 281 -----~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls 354 (615)
T TIGR02903 281 -----LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLT 354 (615)
T ss_pred -----HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCC
Confidence 2333444443210 111224444456778889999999996 57889999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHH
Q 011305 379 TEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 457 (489)
Q Consensus 379 ~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eD 457 (489)
.++...|++..+.......+.+ ++.|++.+. .++..-..+..+...++.+..... .. .....|+.+|
T Consensus 355 ~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~-------~~---~~~~~I~~ed 422 (615)
T TIGR02903 355 PEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAG-------KE---NDKVTITQDD 422 (615)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhc-------cC---CCCeeECHHH
Confidence 9999999999887654332222 233333322 333333333333322222211000 00 0113599999
Q ss_pred HHHHHhhhC
Q 011305 458 VEIALKNTR 466 (489)
Q Consensus 458 f~~AL~~~~ 466 (489)
+++++..-+
T Consensus 423 v~~~l~~~r 431 (615)
T TIGR02903 423 VYEVIQISR 431 (615)
T ss_pred HHHHhCCCc
Confidence 999998655
No 118
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.56 E-value=1.3e-14 Score=150.40 Aligned_cols=246 Identities=24% Similarity=0.337 Sum_probs=161.4
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhcc-c
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D 285 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~g-~ 285 (489)
.|+|++.+|+.+..++.....+....... ...++++||+||||||||++|+++|+.++.+|+.++++++.. .|+| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 59999999999998886533222211111 122489999999999999999999999999999999988774 5777 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 011305 286 SEKLIKVLFELAR------------------------------------------------------------------- 298 (489)
Q Consensus 286 ~~~~l~~lf~~A~------------------------------------------------------------------- 298 (489)
.+..++.++..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4555555555550
Q ss_pred -----------------------------------------------------------------------hcCCcEEEE
Q 011305 299 -----------------------------------------------------------------------HHAPSTIFL 307 (489)
Q Consensus 299 -----------------------------------------------------------------------~~~p~VL~I 307 (489)
....+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred chhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-------CCCcEEEEEEe----CCCCcccHHHHhhcccccccCC
Q 011305 308 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 308 DEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-------~~~~viVIatT----n~p~~Ld~al~rRf~~~i~~~~ 376 (489)
||||.++...+.. .......-++..||..++|-.. ...+|++||+. ..|+.|-|.|.-||+.++.+..
T Consensus 256 DEiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 334 (443)
T PRK05201 256 DEIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDA 334 (443)
T ss_pred EcchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 9999999764321 1122223488899999988532 23567778765 4567788999999999999999
Q ss_pred CCHHHHHHHHHH----hcCCCCC---CCCCCHHHHHHHhcCCcHHHHHHHHHHHHhH-------HHHHHHHHhhhhhc--
Q 011305 377 PDTEARRAMFES----LLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAMQ-------PLRRLMVLLEGRQE-- 440 (489)
Q Consensus 377 Pd~~eR~~IL~~----~l~~~~~---~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~-------a~rR~~~~le~~~~-- 440 (489)
++.++..+||.. .++.+.. ...+++ -|+...++.+++.|... -+|++...++..-.
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L--------~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~ 406 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQALLATEGVTL--------EFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDI 406 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHHHhhcCcEE--------EEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Confidence 999999988743 1111100 001111 15667777777777652 24566555554322
Q ss_pred --cCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 441 --VAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 441 --~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
..|.... ....|+.+-+...+..+
T Consensus 407 ~Fe~p~~~~-~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 407 SFEAPDMSG-ETVTIDAAYVDEKLGDL 432 (443)
T ss_pred hccCCCCCC-CEEEECHHHHHHHHHHH
Confidence 2233221 12347887777666543
No 119
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=2.3e-13 Score=144.46 Aligned_cols=201 Identities=17% Similarity=0.243 Sum_probs=121.8
Q ss_pred CCCCCCcccc-CcHH--HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 203 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 203 ~~~~~~~dli-G~e~--~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+..+|++++ |..+ +...++++...+...+ ..+.++++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~------~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQGK------GFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccccc------CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4667788876 5433 2334444332211000 1123679999999999999999999976 6888999987
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
++...+...........|.... ..+.+|+|||++.+.++.. .+..++..++.....+ ..+|++++..
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~-----------~qeelf~l~N~l~~~~-k~IIlts~~~ 245 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA-----------TQEEFFHTFNSLHTEG-KLIVISSTCA 245 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-----------hHHHHHHHHHHHHHCC-CcEEEecCCC
Confidence 7665443222111111233222 3458999999998864321 1223333333222222 2344444444
Q ss_pred CC---cccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHH
Q 011305 357 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 357 p~---~Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A 423 (489)
|. .+++++++||. ..+.++.|+.++|..|++..+...+...+.+ ++.++....+ +.+++..++...
T Consensus 246 p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 246 PQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred HHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 54 46789999995 6788888999999999999988766554443 4556665553 445555544444
No 120
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.55 E-value=1.4e-13 Score=139.66 Aligned_cols=177 Identities=24% Similarity=0.237 Sum_probs=120.5
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~v 273 (489)
+.+++.+.+|++++|++++++.+...+... ...+++|+||||||||++++++++++. ..++.+
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 456678889999999999999999887431 123689999999999999999999873 345555
Q ss_pred eccchhhhhccchHHHHHHH-HHHHHh-----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCc
Q 011305 274 SASSVVSKWRGDSEKLIKVL-FELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~l-f~~A~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~ 347 (489)
++++..+ ...+... ...+.. ..+.+|+|||+|.+... ..+.|+..++.... .
T Consensus 75 ~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~~---~ 132 (319)
T PRK00440 75 NASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEMYSQ---N 132 (319)
T ss_pred ccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhcCCC---C
Confidence 5443211 1111111 122221 23469999999988432 23446666654322 2
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
..+|.++|.+..+.+++.+|+. .+.++.++.++...+++.++...+...+ ..++.+++.+.|
T Consensus 133 ~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred CeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3456677888888888999995 5899999999999999998877665432 345666665554
No 121
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.55 E-value=1.3e-13 Score=153.66 Aligned_cols=155 Identities=22% Similarity=0.367 Sum_probs=109.0
Q ss_pred hhcCCCCCCCccccCcHHHHH---HHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 199 IIRGSPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~---~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
+....++.+|++++|++.+.. .++..+.. ....+++|+||||||||++|+++|+.++.+++.+++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 334456788999999999885 45555432 123589999999999999999999999999998887
Q ss_pred cchhhhhccchHHHHHHHHHHHH-----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 276 SSVVSKWRGDSEKLIKVLFELAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~-----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
.... .+.++..+..+. .....+|||||+|.+... .++.|+..++. ..+++
T Consensus 86 ~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~-----g~IiL 140 (725)
T PRK13341 86 VLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-------------QQDALLPWVEN-----GTITL 140 (725)
T ss_pred hhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-------------HHHHHHHHhcC-----ceEEE
Confidence 5321 112223333221 123579999999988432 23456666542 23555
Q ss_pred EEEe-CCC-CcccHHHHhhcccccccCCCCHHHHHHHHHHhcC
Q 011305 351 LAAT-NLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 351 IatT-n~p-~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
|++| ..+ ..+++++++|+ ..+.++.++.+++..+++..+.
T Consensus 141 I~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 141 IGATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred EEecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHH
Confidence 5554 333 46889999997 5689999999999999999886
No 122
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.54 E-value=8.5e-14 Score=148.20 Aligned_cols=199 Identities=19% Similarity=0.201 Sum_probs=144.5
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--EEE---
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--FNI--- 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~--i~v--- 273 (489)
+.+++++.+|++++|++.+.+.|...+..- .-.++.||.||.|||||++||.+|+.+++.- ..-
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 456788899999999999999999988652 2346899999999999999999999986542 100
Q ss_pred ---eccchhhh-hc---------cchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHH
Q 011305 274 ---SASSVVSK-WR---------GDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 336 (489)
Q Consensus 274 ---~~s~l~~~-~~---------g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~ 336 (489)
.|.++... +. ...-..++.+.+.+. ..++.|.+|||++.|. ....+.||+
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALLK 141 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALLK 141 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHhc
Confidence 01111000 00 012233445444443 3445799999998774 457788999
Q ss_pred HhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHH
Q 011305 337 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSD 415 (489)
Q Consensus 337 ~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~D 415 (489)
.++ ..+..|.+|.+|..+..++..++||+ ..+.|...+.++....|...+.+.....+.+ +..+++...| +.+|
T Consensus 142 TLE---EPP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 142 TLE---EPPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred ccc---cCccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 886 45666888889999999999999999 5588999999999999999998888876655 4545555554 6677
Q ss_pred HHHHHHHHHhH
Q 011305 416 IRLVSKEAAMQ 426 (489)
Q Consensus 416 i~~l~~~A~~~ 426 (489)
...++.++...
T Consensus 217 alslLDq~i~~ 227 (515)
T COG2812 217 ALSLLDQAIAF 227 (515)
T ss_pred HHHHHHHHHHc
Confidence 77777766553
No 123
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=3.1e-13 Score=148.18 Aligned_cols=177 Identities=17% Similarity=0.189 Sum_probs=122.8
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--------- 270 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~--------- 270 (489)
..++++.+|++|+|++.+++.|+..+.. ..-++++||+||+|||||++|+.+|+.+.+.-
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 3456788999999999999999987644 12346799999999999999999999996521
Q ss_pred -----------------------EEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchh
Q 011305 271 -----------------------FNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSE 323 (489)
Q Consensus 271 -----------------------i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~ 323 (489)
+.+++.. ...-..++.+.+... .....|++|||+|.+...
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s------~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~------- 142 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA------- 142 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------
Confidence 1111110 011233444443332 223469999999988432
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHH
Q 011305 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYD 402 (489)
Q Consensus 324 ~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~ 402 (489)
..+.|+..++.. +..+++|.+|+.+..+.+.+++|+ ..+.|..++.++....+...+...+...+ ..++
T Consensus 143 ------a~naLLK~LEeP---p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~ 212 (620)
T PRK14954 143 ------AFNAFLKTLEEP---PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQ 212 (620)
T ss_pred ------HHHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 356788888733 233555556677788989999999 67999999999988888887776655433 3356
Q ss_pred HHHHHhcC
Q 011305 403 LLVERTEG 410 (489)
Q Consensus 403 ~La~~t~G 410 (489)
.++..+.|
T Consensus 213 ~La~~s~G 220 (620)
T PRK14954 213 LIARKAQG 220 (620)
T ss_pred HHHHHhCC
Confidence 66666654
No 124
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.54 E-value=2e-13 Score=132.12 Aligned_cols=196 Identities=21% Similarity=0.308 Sum_probs=119.9
Q ss_pred CCCCCCcccc-C--cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 011305 203 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 274 (489)
Q Consensus 203 ~~~~~~~dli-G--~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~ 274 (489)
.|+.+|++++ | .+.+...+......+- .....++||||+|+|||+|.+++++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3677899985 5 3445555555433311 123469999999999999999999875 57799999
Q ss_pred ccchhhhhccchHH-HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 275 ASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 275 ~s~l~~~~~g~~~~-~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
+.++...+...... .+..+.... ....+|+|||++.+..+ ...+..|+..++.....+. .+|+++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~k-~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESGK-QLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhCC-eEEEEe
Confidence 98887665432221 112222222 23479999999998644 1234555555555544444 445555
Q ss_pred eCCCCc---ccHHHHhhccc--ccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHH
Q 011305 354 TNLPWE---LDAAMLRRLEK--RILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 354 Tn~p~~---Ld~al~rRf~~--~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A 423 (489)
...|.. +++.+.+||.. .+.+..|+.++|..|++..+...+...+.+ ++.|++... -+.++|..+++..
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l 212 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRL 212 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHH
Confidence 566654 67899999854 678888999999999999998887776555 344566554 4666766655543
No 125
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.53 E-value=1.6e-13 Score=153.54 Aligned_cols=206 Identities=19% Similarity=0.213 Sum_probs=140.1
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-----hhcc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-----KWRG 284 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-----~~~g 284 (489)
.|+|++++++.+.+.+......- .....|..++||+||||||||.+|+++|+.++.+++.++++++.. ...|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 48999999999999886532110 001234457999999999999999999999999999999987643 2222
Q ss_pred chHHH-----HHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-cc-------CCCcEEEE
Q 011305 285 DSEKL-----IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQ-------SDELVFVL 351 (489)
Q Consensus 285 ~~~~~-----l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~-~~-------~~~~viVI 351 (489)
..... -..+....+....+||||||+|.+.+. +++.|++.|+.- .. .-.++++|
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 11100 112233334455689999999998543 677788888732 11 12467889
Q ss_pred EEeCCC-------------------------CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC-------CCCCCCC
Q 011305 352 AATNLP-------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-------QTGEESL 399 (489)
Q Consensus 352 atTn~p-------------------------~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~-------~~~~~~~ 399 (489)
+|||.- ..+.|+++.|++.++.|++.+.++..+|+...+.. .+.....
T Consensus 603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~ 682 (758)
T PRK11034 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEV 682 (758)
T ss_pred EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceE
Confidence 999832 12568888999999999999999999999876632 2333222
Q ss_pred C---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHH
Q 011305 400 P---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 400 d---l~~La~~t--~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
+ ++.|++.. ..+-.+.++.+++.-...++.+.
T Consensus 683 ~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~ 719 (758)
T PRK11034 683 SQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_pred CHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 2 44455432 34556888888887777776654
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.8e-13 Score=150.33 Aligned_cols=188 Identities=18% Similarity=0.205 Sum_probs=127.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.+++.
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 345678889999999999999998877541 234668999999999999999999988532
Q ss_pred ----------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHH
Q 011305 270 ----------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR 329 (489)
Q Consensus 270 ----------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~ 329 (489)
++.++.+. ...-..++.+.+.+.. ....|++|||+|.|.. .
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-------------~ 135 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-------------A 135 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-------------H
Confidence 12222211 0112233444433322 2346999999998743 2
Q ss_pred HHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHh
Q 011305 330 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERT 408 (489)
Q Consensus 330 i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t 408 (489)
..+.|+..++.. ...+++|.+++.++.+.+.+++|+ ..+.|+.++..+...++...+...+...+. .+..++..+
T Consensus 136 a~naLLk~LEep---p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s 211 (585)
T PRK14950 136 AFNALLKTLEEP---PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAA 211 (585)
T ss_pred HHHHHHHHHhcC---CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 356788888743 234556667777888888999999 458899999999999998888766654333 255566655
Q ss_pred cCCcHHHHHHHHH
Q 011305 409 EGYSGSDIRLVSK 421 (489)
Q Consensus 409 ~G~sg~Di~~l~~ 421 (489)
.| +.+++.+.++
T Consensus 212 ~G-dlr~al~~Le 223 (585)
T PRK14950 212 TG-SMRDAENLLQ 223 (585)
T ss_pred CC-CHHHHHHHHH
Confidence 54 5555544444
No 127
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.6e-13 Score=149.33 Aligned_cols=177 Identities=21% Similarity=0.232 Sum_probs=126.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
..++++.+|++++|++.+++.|...+... ...+++||+||+|+|||++|+++|+.+++.
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 34567788999999999999999887652 123689999999999999999999998652
Q ss_pred ----------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHH
Q 011305 270 ----------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR 329 (489)
Q Consensus 270 ----------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~ 329 (489)
++.++.. ....-..++.+...+.. ....|++|||+|.|.. .
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-------------~ 136 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-------------A 136 (620)
T ss_pred cccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-------------H
Confidence 2222221 11233456666665542 2346999999998842 2
Q ss_pred HHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHh
Q 011305 330 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERT 408 (489)
Q Consensus 330 i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t 408 (489)
..+.|+..++. ....+++|++|+++..+.+.+++|+ ..+.|+.++.++....+...+.+.+...+ ..+..+++.+
T Consensus 137 a~naLLK~LEe---Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 137 AFNALLKTLEE---PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred HHHHHHHHHhc---CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 45788888873 3344666777788888999999999 55889888888888888777766554433 2355566666
Q ss_pred cC
Q 011305 409 EG 410 (489)
Q Consensus 409 ~G 410 (489)
.|
T Consensus 213 ~G 214 (620)
T PRK14948 213 QG 214 (620)
T ss_pred CC
Confidence 55
No 128
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=4.7e-13 Score=145.08 Aligned_cols=167 Identities=16% Similarity=0.235 Sum_probs=113.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r 317 (489)
+.++|||++|+|||+|++++++++ +..++++++.++...+...........|... -..+.+|+|||++.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999987 5688999998887665533222222223322 2345899999999886542
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-C---cccHHHHhhcc--cccccCCCCHHHHHHHHHHhcC
Q 011305 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 318 ~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p-~---~Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
. ....|++.++.+...+..+ || |++.+ . .+++.|++||. ..+.+..|+.+.|..||+..+.
T Consensus 394 ~-----------tqeeLF~l~N~l~e~gk~I-II-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 S-----------TQEEFFHTFNTLHNANKQI-VL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred H-----------HHHHHHHHHHHHHhcCCCE-EE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1 1233444444333333333 33 55554 3 47889999995 5558888999999999999998
Q ss_pred CCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 392 SQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 392 ~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
...+..+.+ ++.|+....+ +.++|..++....
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 877765544 4567776653 5677776666543
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.49 E-value=7.7e-13 Score=149.04 Aligned_cols=204 Identities=23% Similarity=0.250 Sum_probs=139.5
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh-------
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~------- 281 (489)
+.|+|++.+++.+.+.+...... ......|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 45899999999998877642110 01112233468999999999999999999999999999999886532
Q ss_pred -----hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCcE
Q 011305 282 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELV 348 (489)
Q Consensus 282 -----~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~v 348 (489)
|+|... ...+....+....+||+|||+|.+.+. +.+.|++.++.-. ..-.++
T Consensus 531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCHH-------------HHHHHHHhhccCeeecCCCcccCCCCC
Confidence 222111 122344445566689999999987543 5677888887431 112357
Q ss_pred EEEEEeCCCC-------------------------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC-------CCC
Q 011305 349 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE 396 (489)
Q Consensus 349 iVIatTn~p~-------------------------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~~~ 396 (489)
++|+|||... .+.|+++.|++.++.|.+.+.++..+|++..+... +..
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~ 675 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIK 675 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7888887641 15678888999999999999999999999887531 111
Q ss_pred CCC---CHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHH
Q 011305 397 ESL---PYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 430 (489)
Q Consensus 397 ~~~---dl~~La~~--t~G~sg~Di~~l~~~A~~~a~rR 430 (489)
... .++.|++. ...+..+.|+.+++.....++..
T Consensus 676 l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 676 LELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred EEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 111 24446654 34566788888777777666554
No 130
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.49 E-value=9.6e-13 Score=130.74 Aligned_cols=134 Identities=25% Similarity=0.281 Sum_probs=93.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc------hhhhhccchHHH-HHH-------------------HHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVSKWRGDSEKL-IKV-------------------LFE 295 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~------l~~~~~g~~~~~-l~~-------------------lf~ 295 (489)
..++||+||||||||++|+++|+.+|.+++.++|.. +.+.+.+..... ... .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 468999999999999999999999999999998753 333333211111 111 111
Q ss_pred HHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------------cCCCcEEEEEEeCCCC----
Q 011305 296 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------------QSDELVFVLAATNLPW---- 358 (489)
Q Consensus 296 ~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-------------~~~~~viVIatTn~p~---- 358 (489)
.|.. .+.+|+|||++.+.++ +++.|+..++.-. .....+.||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 2222 3479999999987543 4455666664211 0113466888999762
Q ss_pred -cccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 359 -ELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 359 -~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
.+++++.+|| ..+.++.|+.++..+|++...
T Consensus 167 ~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 4789999999 679999999999999999875
No 131
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=1.2e-12 Score=139.48 Aligned_cols=170 Identities=13% Similarity=0.197 Sum_probs=111.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeccchhhhhccchHH---HHHHHHHHHHhcCCcEEEEchhhhH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s~l~~~~~g~~~~---~l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
..+++|||++|+|||+|++++++++ +..++++++.++...+...... .+..+.... ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3579999999999999999999965 4788999998887665543222 122221222 34579999999988
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-CCc---ccHHHHhhcc--cccccCCCCHHHHHHHHH
Q 011305 314 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWE---LDAAMLRRLE--KRILVPLPDTEARRAMFE 387 (489)
Q Consensus 314 ~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~-p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~ 387 (489)
.++. .....|+..++.....+. . +|.|++. |.. +++.+.+||. ..+.+..|+.++|.+|++
T Consensus 219 ~~k~-----------~~~e~lf~l~N~~~~~~k-~-iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 219 SYKE-----------KTNEIFFTIFNNFIENDK-Q-LFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCH-----------HHHHHHHHHHHHHHHcCC-c-EEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 5431 122334444443333333 2 3445544 433 6789999995 566778899999999999
Q ss_pred HhcCCCCCC--CC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011305 388 SLLPSQTGE--ES-LPYDLLVERTEGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 388 ~~l~~~~~~--~~-~dl~~La~~t~G~sg~Di~~l~~~A~~~a 427 (489)
..+...+.. .+ .-++.|+..+.| +.+.+..++......+
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a 327 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWS 327 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 998765532 22 235556666664 6677777777665433
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.7e-13 Score=144.75 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=131.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 268 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~------------ 268 (489)
+++.+.+|++|+|++.+++.|...+... ..++.+|||||+|+|||++|+.+|+.+.+
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 3567789999999999999999887541 23467999999999999999999998753
Q ss_pred -------------cEEEEeccchhhhhccchHHHHHHHHHHHHhc----CCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 269 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 269 -------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
.++.+++.+. .....++.+...+... ...|++|||+|.+.. ...
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a~ 138 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-------------AAF 138 (614)
T ss_pred chHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------HHH
Confidence 2233333211 1123455555544322 245999999998843 245
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..|+.. +..+++|.+|+.+..+-+.+++|+ ..+.|..++.++....++..+...+...+. .++.|+..+.|
T Consensus 139 naLLK~LEep---p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 139 NAFLKTLEEP---PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHHhCC---CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7788888743 334556667777788999999999 559999999999999999888777765443 36667776654
Q ss_pred CcHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKE 422 (489)
Q Consensus 411 ~sg~Di~~l~~~ 422 (489)
+.+++..++..
T Consensus 215 -dlr~al~~Lek 225 (614)
T PRK14971 215 -GMRDALSIFDQ 225 (614)
T ss_pred -CHHHHHHHHHH
Confidence 44444444433
No 133
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.47 E-value=5.6e-13 Score=136.27 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=102.2
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcE--EEEec
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTF--FNISA 275 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~--i~v~~ 275 (489)
...|++|+|++.+++.+.-.+.. +...|+||+|+||||||++|+++++-+ +.++ ..+.+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 45699999999999988854322 122689999999999999999999988 3321 11100
Q ss_pred -c--------chh---------------hhhccch--HHHH---HHHHHHH--HhcCCcEEEEchhhhHHhhhcccchhh
Q 011305 276 -S--------SVV---------------SKWRGDS--EKLI---KVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEH 324 (489)
Q Consensus 276 -s--------~l~---------------~~~~g~~--~~~l---~~lf~~A--~~~~p~VL~IDEiD~l~~~r~~~~~~~ 324 (489)
. ++. ....|.. ++.+ ...|..- .....++|||||++.+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~-------- 143 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH-------- 143 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH--------
Confidence 0 000 0011110 0000 0001100 0112269999999988543
Q ss_pred HHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCCC-cccHHHHhhcccccccCCCCH-HHHHHHHHHhc
Q 011305 325 EASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRAMFESLL 390 (489)
Q Consensus 325 ~~~~~i~~~LL~~ldg~~----------~~~~~viVIatTn~p~-~Ld~al~rRf~~~i~~~~Pd~-~eR~~IL~~~l 390 (489)
+++.|++.|+.-. ..+..+++++++|..+ .+.+++++||...+.++.|.. ++|.+|++...
T Consensus 144 -----~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 144 -----IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred -----HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 5566777775321 1234577777777544 489999999999999988866 89999998854
No 134
>PRK08727 hypothetical protein; Validated
Probab=99.46 E-value=5e-12 Score=123.46 Aligned_cols=144 Identities=23% Similarity=0.269 Sum_probs=93.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~ 319 (489)
..++|+||+|||||++++++++++ +....+++..++.. .+...++... +..+|+|||++.+......
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~~ 111 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRED 111 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChHH
Confidence 459999999999999999998875 56677777655432 2223333332 3479999999988643211
Q ss_pred cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC-CCCc---ccHHHHhhc--ccccccCCCCHHHHHHHHHHhcCCC
Q 011305 320 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWE---LDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 320 ~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn-~p~~---Ld~al~rRf--~~~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
...++..++.....+ ..||+|+| .|.. ++++++||| ...+.++.|+.+++.+|++..+...
T Consensus 112 -----------~~~lf~l~n~~~~~~--~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 112 -----------EVALFDFHNRARAAG--ITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -----------HHHHHHHHHHHHHcC--CeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 122333333222222 22444554 5554 479999997 4667899999999999999877655
Q ss_pred CCCCCC-CHHHHHHHhc
Q 011305 394 TGEESL-PYDLLVERTE 409 (489)
Q Consensus 394 ~~~~~~-dl~~La~~t~ 409 (489)
....+. .++.|++.+.
T Consensus 179 ~l~l~~e~~~~La~~~~ 195 (233)
T PRK08727 179 GLALDEAAIDWLLTHGE 195 (233)
T ss_pred CCCCCHHHHHHHHHhCC
Confidence 444333 3566777655
No 135
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.45 E-value=1.8e-12 Score=114.12 Aligned_cols=138 Identities=40% Similarity=0.629 Sum_probs=91.7
Q ss_pred CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchHHH
Q 011305 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKL 289 (489)
Q Consensus 213 G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~~~ 289 (489)
|.+...+.+...+.. ....+++++||||||||++++.+++.+ +.+++.+++.+............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 455666666655432 234789999999999999999999998 89999999877654433221111
Q ss_pred ---HHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc---CCCcEEEEEEeCCCC--ccc
Q 011305 290 ---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---SDELVFVLAATNLPW--ELD 361 (489)
Q Consensus 290 ---l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~---~~~~viVIatTn~p~--~Ld 361 (489)
............+.+|+|||++.+... ....++..+..... ....+.+|+++|... .++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSRG-------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhHH-------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 122233344556799999999987322 12334444443322 134577888888776 688
Q ss_pred HHHHhhcccccccC
Q 011305 362 AAMLRRLEKRILVP 375 (489)
Q Consensus 362 ~al~rRf~~~i~~~ 375 (489)
+.+.+||+..+.++
T Consensus 137 ~~~~~r~~~~i~~~ 150 (151)
T cd00009 137 RALYDRLDIRIVIP 150 (151)
T ss_pred hhHHhhhccEeecC
Confidence 89999998777765
No 136
>PRK05642 DNA replication initiation factor; Validated
Probab=99.45 E-value=4.8e-12 Score=123.67 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~ 319 (489)
.+++|+||+|||||+|++++++++ +..++++++.++.... ..+.+.... ..+|+|||++.+.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 679999999999999999999865 6778888887765431 122222222 26999999998854321
Q ss_pred cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCC
Q 011305 320 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT 394 (489)
Q Consensus 320 ~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~ 394 (489)
....|++.++.....+ ..+|++++..|.. ..+.++|||. ..+.+..|+.+++..+++..+...+
T Consensus 115 ----------~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 ----------WEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred ----------HHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1233555554333333 3556666655543 4689999994 5566788999999999996655444
Q ss_pred CCCCC-CHHHHHHHhcCCcHHHHHHHHH
Q 011305 395 GEESL-PYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 395 ~~~~~-dl~~La~~t~G~sg~Di~~l~~ 421 (489)
...+. -++.|++...+ +.+.+..++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 43332 24556665553 4445544444
No 137
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=5.2e-12 Score=130.85 Aligned_cols=165 Identities=22% Similarity=0.304 Sum_probs=116.6
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----EEEEeccchhhhh
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----FFNISASSVVSKW 282 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~-----~i~v~~s~l~~~~ 282 (489)
-+.+.+.++..+++...+...+. ...|.+++++||||||||.+++.+++++..+ +++|||....+.+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 34588999999999988765543 2334579999999999999999999998544 8999997654332
Q ss_pred c---------------cch-HHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 283 R---------------GDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 283 ~---------------g~~-~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
. |.. ......+++.... ....||++||+|.|....+ .++-.|+..... ..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~---~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGE---NK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hHHHHHHhhccc---cc
Confidence 1 111 1222333333332 3456899999999976532 244444444332 24
Q ss_pred CcEEEEEEeCCCC---cccHHHHhhc-ccccccCCCCHHHHHHHHHHhcCCC
Q 011305 346 ELVFVLAATNLPW---ELDAAMLRRL-EKRILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 346 ~~viVIatTn~p~---~Ld~al~rRf-~~~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
..+.+|+.+|..+ .+++.+.+++ ...|.||+++.+|...|++......
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~ 206 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG 206 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh
Confidence 5688899999874 4889999977 3558999999999999999988643
No 138
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=1.3e-11 Score=127.90 Aligned_cols=187 Identities=17% Similarity=0.153 Sum_probs=121.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------------
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 269 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~------------- 269 (489)
..+.++++|+|++.+++.|.+.+... ..++.+||+||+|+||+++|.++|+.+-..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 35668999999999999999887652 335679999999999999999999987211
Q ss_pred ---------------------EEEEecc--chhhhhcc-chHHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccc
Q 011305 270 ---------------------FFNISAS--SVVSKWRG-DSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEAR 321 (489)
Q Consensus 270 ---------------------~i~v~~s--~l~~~~~g-~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~ 321 (489)
++.+... +-.++... -.-..++.+...+ ....|.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 1111110 00000000 0112234433332 234567999999998843
Q ss_pred hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCH
Q 011305 322 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY 401 (489)
Q Consensus 322 ~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl 401 (489)
...+.|++.++. .+..+++|.+|+.++.+.+.+++|+ ..+.++.|+.++-.+++...... ..+..+
T Consensus 156 -------~aanaLLK~LEe---pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 156 -------NAANALLKVLEE---PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -------HHHHHHHHHHhc---CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 355778888873 3334567778999999999999999 66999999999999998876421 111122
Q ss_pred HHHHHHhcCCcHHHHHHHHH
Q 011305 402 DLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 402 ~~La~~t~G~sg~Di~~l~~ 421 (489)
..++..+.| +++....+..
T Consensus 222 ~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 222 AALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHcCC-CHHHHHHHhc
Confidence 455555555 4444444443
No 139
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.42 E-value=3.1e-12 Score=131.24 Aligned_cols=162 Identities=20% Similarity=0.270 Sum_probs=104.0
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEEe--
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNIS-- 274 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-------~~~i~v~-- 274 (489)
+...|++|+|++++|..|...+..+ ...++||.||+|||||++||++++.+. .||....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 4457999999999999998776553 236899999999999999999988762 2232000
Q ss_pred ----ccchhhhh-------------------ccchHHH------HHHHHHHHH---------hcCCcEEEEchhhhHHhh
Q 011305 275 ----ASSVVSKW-------------------RGDSEKL------IKVLFELAR---------HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 275 ----~s~l~~~~-------------------~g~~~~~------l~~lf~~A~---------~~~p~VL~IDEiD~l~~~ 316 (489)
+++..+.. .|.++.. +...+.... ....++|||||++.+.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 00000000 0111111 111111110 112379999999998654
Q ss_pred hcccchhhHHHHHHHHHHHHHhcC---------Cc-cCCCcEEEEEEeCCCC-cccHHHHhhcccccccCCCC-HHHHHH
Q 011305 317 RGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPD-TEARRA 384 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg---------~~-~~~~~viVIatTn~p~-~Ld~al~rRf~~~i~~~~Pd-~~eR~~ 384 (489)
+++.|+..|+. .. ..+.++++|+|.|..+ .+.+++.+||...+.+..|+ .+++.+
T Consensus 160 -------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~ 226 (350)
T CHL00081 160 -------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVK 226 (350)
T ss_pred -------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHH
Confidence 44556666642 11 1234566776666544 49999999999999999997 699999
Q ss_pred HHHHhc
Q 011305 385 MFESLL 390 (489)
Q Consensus 385 IL~~~l 390 (489)
|++...
T Consensus 227 il~~~~ 232 (350)
T CHL00081 227 IVEQRT 232 (350)
T ss_pred HHHhhh
Confidence 999864
No 140
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=8.2e-12 Score=127.16 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=116.1
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--------cEEEEeccch
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------TFFNISASSV 278 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~--------~~i~v~~s~l 278 (489)
+|++|+|++.+++.+...+.. ...++.+||+||+|+|||++|+++|+.+.+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 589999999999999988743 233467899999999999999999998732 122332210
Q ss_pred hhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 279 VSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
+.. -.-..++.+.+.+. .....|++||++|.+.. ...+.|+..++. .+..+++|.+|
T Consensus 70 -~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-------------~a~naLLK~LEe---pp~~t~~il~~ 130 (313)
T PRK05564 70 -KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-------------QAQNAFLKTIEE---PPKGVFIILLC 130 (313)
T ss_pred -CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-------------HHHHHHHHHhcC---CCCCeEEEEEe
Confidence 111 11223444444332 23446999999988843 245788998873 34445666677
Q ss_pred CCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcH
Q 011305 355 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG 413 (489)
Q Consensus 355 n~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg 413 (489)
++++.+.+.++||+ ..+.|+.|+.++....++..+.. . ....++.++..+.|-.+
T Consensus 131 ~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 131 ENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred CChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCHH
Confidence 88999999999999 57999999999988888765431 1 12224455555555333
No 141
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.40 E-value=5.9e-12 Score=130.70 Aligned_cols=239 Identities=17% Similarity=0.209 Sum_probs=146.5
Q ss_pred CCCCCCCccccCcHH---HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEE
Q 011305 202 GSPDVKWESIKGLEN---AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 273 (489)
Q Consensus 202 ~~~~~~~~dliG~e~---~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v 273 (489)
..+..+|++++.-.. +......+...+ ..+...++||||+|+|||+|++|++++. +..++++
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~ 149 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL 149 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhcc----------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec
Confidence 456778888654332 333333322221 1234679999999999999999999987 4568888
Q ss_pred eccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 274 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
+...+...++......-..-|+.-. +-.+|+|||++.+.++. +.+.++.+.+..+...+. -+|+++
T Consensus 150 ~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~-----------~~qeefFh~FN~l~~~~k-qIvlts 215 (408)
T COG0593 150 TSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE-----------RTQEEFFHTFNALLENGK-QIVLTS 215 (408)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh-----------hHHHHHHHHHHHHHhcCC-EEEEEc
Confidence 8888776665443332233344433 33799999999997652 234455555555544444 445555
Q ss_pred eCCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011305 354 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 354 Tn~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~~a 427 (489)
...|.. +.+.++|||. ..+.+.+|+.+.|..||+..+...+...+.+ +..+++... -+.+++..++......+
T Consensus 216 dr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a 294 (408)
T COG0593 216 DRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFA 294 (408)
T ss_pred CCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHH
Confidence 566655 5689999995 5567788999999999999887777775554 455666555 45667766665544433
Q ss_pred HHHHHH-HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 428 LRRLMV-LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 428 ~rR~~~-~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
.-.-.. ......+++.+....... +|.++|.+.+.++-
T Consensus 295 ~~~~~~iTi~~v~e~L~~~~~~~~~-itie~I~~~Va~~y 333 (408)
T COG0593 295 LFTKRAITIDLVKEILKDLLRAGEK-ITIEDIQKIVAEYY 333 (408)
T ss_pred HhcCccCcHHHHHHHHHHhhccccc-CCHHHHHHHHHHHh
Confidence 221100 000111111111111125 89999998887663
No 142
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=1.9e-11 Score=126.11 Aligned_cols=194 Identities=15% Similarity=0.152 Sum_probs=123.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEE-e
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNI-S 274 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-------~~i~v-~ 274 (489)
..+..+++|+|++.+++.+...+... ..++.+||+||+|+|||++|+.+|+.+.. +.... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 35667999999999999999987542 33467999999999999999999998844 11100 1
Q ss_pred c---c-----------chh---hh--hc------cchHHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhH
Q 011305 275 A---S-----------SVV---SK--WR------GDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHE 325 (489)
Q Consensus 275 ~---s-----------~l~---~~--~~------g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~ 325 (489)
| . ++. .. .. .-.-..++.+.+.. ......|++|||+|.+...
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~--------- 156 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN--------- 156 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH---------
Confidence 1 0 000 00 00 00112233333222 2234569999999998432
Q ss_pred HHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 011305 326 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLV 405 (489)
Q Consensus 326 ~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La 405 (489)
..+.||+.++.. +..+++|..|+.++.+.+.+++|+ ..+.+++|+.++-..+++....... -.+..+..++
T Consensus 157 ----aanaLLk~LEEp---p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 157 ----AANAILKTLEEP---PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred ----HHHHHHHHHhcC---CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 456788888743 233455556788888899999999 6899999999999999988432222 1112244566
Q ss_pred HHhcCCcHHHHHHHHHHHHhH
Q 011305 406 ERTEGYSGSDIRLVSKEAAMQ 426 (489)
Q Consensus 406 ~~t~G~sg~Di~~l~~~A~~~ 426 (489)
..+.| +++....+.......
T Consensus 228 ~~s~G-~pr~Al~ll~~~~~~ 247 (351)
T PRK09112 228 QRSKG-SVRKALLLLNYGGLE 247 (351)
T ss_pred HHcCC-CHHHHHHHHhcCcHH
Confidence 65554 444444555444433
No 143
>PRK06620 hypothetical protein; Validated
Probab=99.38 E-value=1.7e-11 Score=118.17 Aligned_cols=174 Identities=16% Similarity=0.172 Sum_probs=104.9
Q ss_pred CCCCCCccccCcH---HHHHHHHHHHHccccCchhhcccCCC-CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 203 SPDVKWESIKGLE---NAKRLLKEAVVMPIKYPKYFTGLLSP-WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 203 ~~~~~~~dliG~e---~~k~~L~e~v~~~l~~~~~~~~~~~~-~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.+..+|++++--+ .+...++++...+ ...+ ...++||||||||||+|++++++..+..++ +....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~---------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF---------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc---------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh
Confidence 3556788865433 3555555543211 0112 267999999999999999999998875332 21110
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
....+ ....+|+|||+|.+- . ..|+..++.+...+ ..++++++..|.
T Consensus 79 -----------~~~~~-----~~~d~lliDdi~~~~-------------~---~~lf~l~N~~~e~g-~~ilits~~~p~ 125 (214)
T PRK06620 79 -----------NEEIL-----EKYNAFIIEDIENWQ-------------E---PALLHIFNIINEKQ-KYLLLTSSDKSR 125 (214)
T ss_pred -----------chhHH-----hcCCEEEEeccccch-------------H---HHHHHHHHHHHhcC-CEEEEEcCCCcc
Confidence 00111 123799999998441 0 12333332222233 356677766665
Q ss_pred c--ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHH
Q 011305 359 E--LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKE 422 (489)
Q Consensus 359 ~--Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~ 422 (489)
. + +++++|+. ..+.+..|+.+++..+++..+...+...+.+ ++.|++...| +.+.+..++..
T Consensus 126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 4 6 89999995 3588899999999999999887655544433 5556666653 44444444443
No 144
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.38 E-value=2.2e-13 Score=143.44 Aligned_cols=222 Identities=25% Similarity=0.321 Sum_probs=148.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
.....+|++|+|.......+.+.+... ...+.+|||.|.+||||..+|++|.+.+ +.||+.+||..+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 445678999999999888888776542 2445789999999999999999999977 789999999765
Q ss_pred hhhh---------ccc----hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc------
Q 011305 279 VSKW---------RGD----SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD------ 339 (489)
Q Consensus 279 ~~~~---------~g~----~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld------ 339 (489)
.... .|. ...--..+|+.|.. +.||+|||..+... ++..||.-++
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl~-------------LQaKLLRVLQEkei~r 371 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPLP-------------LQAKLLRVLQEKEIER 371 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCHH-------------HHHHHHHHHhhceEEe
Confidence 4221 111 11112345666555 79999999888654 3444555544
Q ss_pred --CCccCCCcEEEEEEeCCCCcccHHHHh---------hcccccccCCCCHHHHHHHHHH----hcCCCCCCCCCCHHHH
Q 011305 340 --GLTQSDELVFVLAATNLPWELDAAMLR---------RLEKRILVPLPDTEARRAMFES----LLPSQTGEESLPYDLL 404 (489)
Q Consensus 340 --g~~~~~~~viVIatTn~p~~Ld~al~r---------Rf~~~i~~~~Pd~~eR~~IL~~----~l~~~~~~~~~dl~~L 404 (489)
+.....-.|-||+|||+. +.+++.. |. .++.+..|...+|.+=+.. ++.+... ..
T Consensus 372 vG~t~~~~vDVRIIAATN~n--L~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~-------~~ 441 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRN--LEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSR-------RY 441 (560)
T ss_pred cCCCCceeeEEEEEeccCcC--HHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHH-------Hc
Confidence 333334568899999984 3333333 44 3456677877777653333 2222111 11
Q ss_pred HHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHH-HHHhh
Q 011305 405 VERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE-IALKN 464 (489)
Q Consensus 405 a~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~-~AL~~ 464 (489)
.+...|.++..+..|.+..|.+++|.+.+.++..-...+.+.. |+.+|+- .++..
T Consensus 442 ~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~~~~~~-----I~~~~lp~~~l~~ 497 (560)
T COG3829 442 GRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVESDGL-----IDADDLPAFALEE 497 (560)
T ss_pred CCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhccCCcce-----eehhhcchhhhcc
Confidence 2235678888999999999999999998888876654444432 6677766 44444
No 145
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.38 E-value=1.8e-11 Score=117.08 Aligned_cols=192 Identities=18% Similarity=0.208 Sum_probs=134.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
.+.+.+.+|+|.+..|+.|.+....+.. ..|..+|||+|..|||||+++||+.++. +..+++|+..++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3457789999999999999886655442 3456899999999999999999999988 6779999988774
Q ss_pred hhhccchHHHHHHHHHHHHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC-CccCCCcEEEEEEeCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNLP 357 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg-~~~~~~~viVIatTn~p 357 (489)
. +-.+++..+.. ..-|||+||+-- .+++. -...|-..++| +...+.+|++.+|+|+.
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---------e~gd~---~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLSF---------EEGDD---AYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCCC---------CCCch---HHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 2 23344444432 346999999821 01111 12233344554 46778899999999987
Q ss_pred CcccH----------------------HHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHH----HHHHhcC
Q 011305 358 WELDA----------------------AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERTEG 410 (489)
Q Consensus 358 ~~Ld~----------------------al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~----La~~t~G 410 (489)
..++. .+-+||...+.|+.+++++-..|+..+++..++..+. .++. -|..-.|
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 54321 2334999999999999999999999999888776532 2322 2344556
Q ss_pred CcHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEA 423 (489)
Q Consensus 411 ~sg~Di~~l~~~A 423 (489)
-||+--.+.++..
T Consensus 265 RSGR~A~QF~~~~ 277 (287)
T COG2607 265 RSGRVAWQFIRDL 277 (287)
T ss_pred CccHhHHHHHHHH
Confidence 7777665555543
No 146
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.37 E-value=1.1e-11 Score=141.33 Aligned_cols=203 Identities=22% Similarity=0.230 Sum_probs=135.3
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~---- 281 (489)
+.|+|++.+.+.+.+.+...... ......|...+||+||||||||.+|+++|+.+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG---LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 46899999999999988653210 00011232358999999999999999999998 457899998876432
Q ss_pred --------hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--c------CC
Q 011305 282 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SD 345 (489)
Q Consensus 282 --------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~------~~ 345 (489)
|+|..+. ..+....+...++||+|||+|...+ .+.+.|++.++.-. . .-
T Consensus 643 ~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 643 RLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred cccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCCcEEec
Confidence 3332211 1233444556779999999987643 25566777776331 1 11
Q ss_pred CcEEEEEEeCCCC-----------------------------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC---
Q 011305 346 ELVFVLAATNLPW-----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ--- 393 (489)
Q Consensus 346 ~~viVIatTn~p~-----------------------------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~--- 393 (489)
.+.+||+|||... .+.|++++|++ .+.|.+.+.++..+|+...+...
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~r 786 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARR 786 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 4578888988521 14577888996 78999999999999998876432
Q ss_pred -----CCCCCC---CHHHHHHHhcC--CcHHHHHHHHHHHHhHHHHH
Q 011305 394 -----TGEESL---PYDLLVERTEG--YSGSDIRLVSKEAAMQPLRR 430 (489)
Q Consensus 394 -----~~~~~~---dl~~La~~t~G--~sg~Di~~l~~~A~~~a~rR 430 (489)
+....+ -++.|++...+ |-.+.++.+++.-...++.+
T Consensus 787 l~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 787 LKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 222222 24556665533 55788888888777666654
No 147
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.37 E-value=9e-12 Score=118.47 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=120.4
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-C----CcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K----TTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~----~~~i~v 273 (489)
+++++.+..+.||+|.++....|.-+... ....+++|.|||||||||.+.++|+++ | --+.++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 67788889999999999999999976543 123589999999999999999999988 2 336778
Q ss_pred eccchhhhhccchHHHHHHHHHHHHh-cCC---cEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEE
Q 011305 274 SASSVVSKWRGDSEKLIKVLFELARH-HAP---STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 349 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~~A~~-~~p---~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~vi 349 (489)
|+++-.+- ......++. |.+-+- ..| .|+++||+|++... .+.+|-..|+-+++.. -
T Consensus 85 NASdeRGI--DvVRn~IK~-FAQ~kv~lp~grhKIiILDEADSMT~g-------------AQQAlRRtMEiyS~tt---R 145 (333)
T KOG0991|consen 85 NASDERGI--DVVRNKIKM-FAQKKVTLPPGRHKIIILDEADSMTAG-------------AQQALRRTMEIYSNTT---R 145 (333)
T ss_pred cCcccccc--HHHHHHHHH-HHHhhccCCCCceeEEEeeccchhhhH-------------HHHHHHHHHHHHcccc---h
Confidence 88764332 112233333 433322 222 59999999998644 2233444444333322 2
Q ss_pred EEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHH
Q 011305 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 350 VIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~ 421 (489)
+..++|..+.+-+.+.||| -.+.|...+..+...-+....+..... .+..++.+.-..+| |+++.++
T Consensus 146 FalaCN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalN 213 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALN 213 (333)
T ss_pred hhhhhcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHH
Confidence 5668999999999999999 446666666665554444444443333 23335555544443 5544333
No 148
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.1e-11 Score=136.96 Aligned_cols=204 Identities=23% Similarity=0.259 Sum_probs=142.2
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeccchhhh----
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK---- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s~l~~~---- 281 (489)
..|+|++++...+...+..... -+.....|..++||.||+|+|||.+|+++|..+. ..++.+++|++..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRa---GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARA---GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhc---CCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 3589999999999988865321 1111234556789999999999999999999995 88999999998754
Q ss_pred --------hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-c-------CC
Q 011305 282 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-Q-------SD 345 (489)
Q Consensus 282 --------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-~-------~~ 345 (489)
|+|..+ =..+.+..+.+.++||++|||+.-.++ +.+-||+.+|.-. . .-
T Consensus 568 rLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAHpd-------------V~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 568 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAHPD-------------VFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcCHH-------------HHHHHHHHhcCCeeecCCCCEEec
Confidence 333222 123455566677799999999887544 7888999987331 1 12
Q ss_pred CcEEEEEEeCCCC----------------------------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC----
Q 011305 346 ELVFVLAATNLPW----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ---- 393 (489)
Q Consensus 346 ~~viVIatTn~p~----------------------------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~---- 393 (489)
.+++||+|||--. .+.|+++.|++.+|.|...+.+...+|+...+...
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L 712 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRL 712 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 4688999997421 04577888999999999999999999988876432
Q ss_pred ---CCCCC--C-CHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHH
Q 011305 394 ---TGEES--L-PYDLLVERT--EGYSGSDIRLVSKEAAMQPLRR 430 (489)
Q Consensus 394 ---~~~~~--~-dl~~La~~t--~G~sg~Di~~l~~~A~~~a~rR 430 (489)
+.... . -.+.|+... ..|-.+-++.+++.-....+.+
T Consensus 713 ~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 713 AERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred HhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 22211 1 134455543 2456677777776666555544
No 149
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.35 E-value=2.5e-11 Score=123.21 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=106.6
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------------------
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--------------------- 267 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~--------------------- 267 (489)
++++|.+.+...+...+...- ..++.+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 367788888888887765321 1234599999999999999999999986
Q ss_pred ---CcEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011305 268 ---TTFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (489)
Q Consensus 268 ---~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg 340 (489)
-.++++++++..... .....++.+...... ....|++|||+|.+..+ ..+.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-------------A~nallk~lE- 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-------------AANALLKTLE- 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHHHhc-
Confidence 467888877654321 123344444443322 23579999999999653 4567888776
Q ss_pred CccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHH
Q 011305 341 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 387 (489)
Q Consensus 341 ~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~ 387 (489)
..+....+|.+||+++.+-+.++||+ ..+.|+.|+........+
T Consensus 135 --ep~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 --EPPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred --cCCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 34455778889999999999999999 558887776666555444
No 150
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.34 E-value=3e-11 Score=123.87 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=100.5
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEE--------
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFF-------- 271 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i-------- 271 (489)
.|..|+|++++|..|.-.+..+ ...+++|.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999999987655432 23689999999999999999999877 22221
Q ss_pred -EEecc-------------------chhh-----hhccchH--HHH--------HHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 272 -NISAS-------------------SVVS-----KWRGDSE--KLI--------KVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 272 -~v~~s-------------------~l~~-----~~~g~~~--~~l--------~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
..+|. ++.. ...|... +.+ ..++.. ...++|||||++.+.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhCCHH
Confidence 00000 1100 1112110 000 011111 22379999999988543
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCC---------c-cCCCcEEEEEEeCCCC-cccHHHHhhcccccccCCCCH-HHHHH
Q 011305 317 RGEARSEHEASRRLKTELLIQMDGL---------T-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRA 384 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg~---------~-~~~~~viVIatTn~p~-~Ld~al~rRf~~~i~~~~Pd~-~eR~~ 384 (489)
+++.|+..|+.- . ..+.+++++++.|..+ .+.+++++||...+.++.|+. ++|.+
T Consensus 147 -------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 147 -------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred -------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHH
Confidence 455666666421 1 1234567777776544 589999999999999999865 88999
Q ss_pred HHHHhc
Q 011305 385 MFESLL 390 (489)
Q Consensus 385 IL~~~l 390 (489)
|++...
T Consensus 214 IL~~~~ 219 (337)
T TIGR02030 214 IVERRT 219 (337)
T ss_pred HHHhhh
Confidence 998854
No 151
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.34 E-value=1.7e-11 Score=132.14 Aligned_cols=211 Identities=19% Similarity=0.172 Sum_probs=139.2
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccc--cCchhhccc--------------------CCCCceEEEEcCCCCcH
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPI--KYPKYFTGL--------------------LSPWKGILLFGPPGTGK 255 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l--~~~~~~~~~--------------------~~~~~~vLL~GppGtGK 255 (489)
.++.++.+..|.||.|.+.+-+.+..++..+- .....+.++ .++.+-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 45667778889999999999988888876631 111000010 12335688999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 256 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 256 T~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
||||+.+|++.|..+++||+++-.+.. .....+..+...- ...+|..|+|||||.-. +..+
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-------------~~~V 404 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-------------RAAV 404 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------HHHH
Confidence 999999999999999999998753221 1222222222211 12568999999998543 2234
Q ss_pred HHHHHHhc-------CCccC-----------CCcEEEEEEeCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcC
Q 011305 332 TELLIQMD-------GLTQS-----------DELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 332 ~~LL~~ld-------g~~~~-----------~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
+.++..+. |-... .-...|||.||+... |+|+. -|...+.|+.|......+-|+..+.
T Consensus 405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVERLNEICH 482 (877)
T ss_pred HHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHHHHHHHHh
Confidence 44444443 11110 012457899998654 55554 6889999999999888888888887
Q ss_pred CCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011305 392 SQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 392 ~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~a~r 429 (489)
..+...+. .+..|++.+. .||+..++.....+.+
T Consensus 483 rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 483 RENMRADSKALNALCELTQ----NDIRSCINTLQFLASN 517 (877)
T ss_pred hhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHh
Confidence 77776543 3555666555 5998888876665543
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.34 E-value=3.8e-11 Score=137.42 Aligned_cols=208 Identities=21% Similarity=0.262 Sum_probs=139.0
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh---
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 282 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~--- 282 (489)
+.|+|++.+++.+.+.+...... ......|...+||+||+|||||++|+++|..+ +.+++.++++++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 56999999999999988653210 00012344679999999999999999999987 5789999998764321
Q ss_pred --ccchHH-----HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCc
Q 011305 283 --RGDSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 347 (489)
Q Consensus 283 --~g~~~~-----~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~ 347 (489)
.|.... ....+....+....+||+|||++.+.+. +++.|++.++.-. ..-.+
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~-------------v~~~Ll~~l~~g~l~d~~g~~vd~rn 708 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPD-------------VFNVLLQVLDDGRLTDGQGRTVDFRN 708 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHH-------------HHHHHHHHHhcCceecCCCeEEecCC
Confidence 111000 0122333444555679999999987543 5677777775321 11245
Q ss_pred EEEEEEeCCCCc-------------------------ccHHHHhhcccccccCCCCHHHHHHHHHHhcCC-------CCC
Q 011305 348 VFVLAATNLPWE-------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-------QTG 395 (489)
Q Consensus 348 viVIatTn~p~~-------------------------Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~-------~~~ 395 (489)
.+||+|||.... +.|.+..|++.++.|.+++.++..+|+...+.. .+.
T Consensus 709 ~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~ 788 (852)
T TIGR03346 709 TVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKI 788 (852)
T ss_pred cEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 778899987321 346677799999999999999999998887642 111
Q ss_pred CCCCC---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHH
Q 011305 396 EESLP---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 396 ~~~~d---l~~La~~t--~G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
...++ ++.|++.. ..+..+.++.+++......+.+.+
T Consensus 789 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 789 TLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred eecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 22222 44566652 256778999988888887776543
No 153
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.33 E-value=9e-12 Score=138.12 Aligned_cols=156 Identities=23% Similarity=0.298 Sum_probs=106.3
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------------------
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------------------- 266 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------------------- 266 (489)
.|.+|+|++.++..|.-....+ ...+|||.|++|||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4789999999998887655432 12579999999999999999999987
Q ss_pred ---------------CCcEEEEeccchhhhhccch--HHHH--------HHHHHHHHhcCCcEEEEchhhhHHhhhcccc
Q 011305 267 ---------------KTTFFNISASSVVSKWRGDS--EKLI--------KVLFELARHHAPSTIFLDEIDAIISQRGEAR 321 (489)
Q Consensus 267 ---------------~~~~i~v~~s~l~~~~~g~~--~~~l--------~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~ 321 (489)
..||+.+.++.......|.. ++.+ ..++..| ..+||||||++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH-----
Confidence 35677766554333333321 1111 0111111 2379999999988543
Q ss_pred hhhHHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCC-CcccHHHHhhcccccccCCC-CHHHHHHHHHHh
Q 011305 322 SEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAMFESL 389 (489)
Q Consensus 322 ~~~~~~~~i~~~LL~~ldg~~----------~~~~~viVIatTn~p-~~Ld~al~rRf~~~i~~~~P-d~~eR~~IL~~~ 389 (489)
+++.|+..|+.-. .....+.+|+|+|.. ..+.+++++||...+.++.+ +.+++.++++..
T Consensus 142 --------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 142 --------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred --------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 5667777775221 112357788888743 35889999999988888877 467788888765
Q ss_pred c
Q 011305 390 L 390 (489)
Q Consensus 390 l 390 (489)
+
T Consensus 214 ~ 214 (633)
T TIGR02442 214 L 214 (633)
T ss_pred H
Confidence 4
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.33 E-value=2.4e-11 Score=138.62 Aligned_cols=205 Identities=21% Similarity=0.245 Sum_probs=137.0
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~---- 281 (489)
+.|+|++.+++.+...+...... ......|...+||+||+|||||++|+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 46899999999999887642210 00112333568999999999999999999988 468899998876432
Q ss_pred --------hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCC
Q 011305 282 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 345 (489)
Q Consensus 282 --------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~ 345 (489)
|+|..+ ...+....+....+||+|||+|.+.+. +.+.|++.++.-. ..-
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~~-------------v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHPD-------------IFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCHH-------------HHHHHHHHhccCceecCCCcEEec
Confidence 222111 123444555555689999999987533 6677888887421 112
Q ss_pred CcEEEEEEeCCCCc-------------------------------------ccHHHHhhcccccccCCCCHHHHHHHHHH
Q 011305 346 ELVFVLAATNLPWE-------------------------------------LDAAMLRRLEKRILVPLPDTEARRAMFES 388 (489)
Q Consensus 346 ~~viVIatTn~p~~-------------------------------------Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~ 388 (489)
.+.++|+|||.... +.|++++|++.++.|.+.+.++..+|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 45788889875311 23567889999999999999999999888
Q ss_pred hcCCC-------CCCC--CC-CHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 389 LLPSQ-------TGEE--SL-PYDLLVER--TEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 389 ~l~~~-------~~~~--~~-dl~~La~~--t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
.+.+. +... +. ..+.|++. ...+-.+.|+.+++.-...++.+.
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~ 785 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEE 785 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 77532 2221 11 13446664 234557888887777776666553
No 155
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.32 E-value=2.8e-12 Score=134.95 Aligned_cols=205 Identities=20% Similarity=0.236 Sum_probs=137.3
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW 282 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~ 282 (489)
....+++|...+.+++.+.+... .....+|||+|++||||..+||+|.+.. +.||+.|||..+....
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45789999999999999887552 2345789999999999999999999987 5799999997664321
Q ss_pred -----ccc----hHH---HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC--------Cc
Q 011305 283 -----RGD----SEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LT 342 (489)
Q Consensus 283 -----~g~----~~~---~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg--------~~ 342 (489)
.|. ... .-...|+.|.. +.||||||..+... ++..||..++. ..
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl~-------------~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPLE-------------LQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCHH-------------HHHHHHHHHHcCeeEecCCCc
Confidence 111 111 11123444444 89999999888654 44455555542 12
Q ss_pred cCCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHH----HhcCC
Q 011305 343 QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVE----RTEGY 411 (489)
Q Consensus 343 ~~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~----~t~G~ 411 (489)
...-.|-||++||..- .+-+.|.-|+ .++.+..|...+|.+=+-.++... +...++ ...++
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hf-------l~~~~~~~~~~~~~~ 343 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHF-------LKRFAAELGRPPKGF 343 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHH-------HHHHHHHcCCCCCCC
Confidence 2233578999998841 1334444477 557788888888775333322111 122222 24578
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCC
Q 011305 412 SGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 444 (489)
Q Consensus 412 sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~ 444 (489)
++..+..+....|.+++|.+.+.++.....++.
T Consensus 344 s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 344 SPEALAALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred CHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 899999999999999999998888776554433
No 156
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=1.3e-10 Score=118.21 Aligned_cols=179 Identities=15% Similarity=0.185 Sum_probs=118.7
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 269 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~----------------- 269 (489)
.|++|+|++.+++.+...+... .-++.+||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 4889999999999999988552 234789999999999999999999987321
Q ss_pred -EEEEeccchh-hh--------hcc-------c-hHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHH
Q 011305 270 -FFNISASSVV-SK--------WRG-------D-SEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEAS 327 (489)
Q Consensus 270 -~i~v~~s~l~-~~--------~~g-------~-~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 327 (489)
++.+...... ++ ..| . .-..++.+...+. .....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1222211000 00 000 0 0123444444333 23457999999998843
Q ss_pred HHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 011305 328 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER 407 (489)
Q Consensus 328 ~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~ 407 (489)
...+.||+.++... . .++|..|++++.+-+.++||+ ..+.|+.|+.++..++|+....... .+.+...++..
T Consensus 139 -~aaNaLLK~LEEPp---~-~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~ 210 (314)
T PRK07399 139 -AAANALLKTLEEPG---N-GTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLAL 210 (314)
T ss_pred -HHHHHHHHHHhCCC---C-CeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 24578999997432 2 345667788999999999999 6699999999999999887643211 11224566666
Q ss_pred hcCCcHHHH
Q 011305 408 TEGYSGSDI 416 (489)
Q Consensus 408 t~G~sg~Di 416 (489)
..|-.+.-+
T Consensus 211 a~Gs~~~al 219 (314)
T PRK07399 211 AQGSPGAAI 219 (314)
T ss_pred cCCCHHHHH
Confidence 665444333
No 157
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.31 E-value=1.9e-11 Score=125.39 Aligned_cols=195 Identities=21% Similarity=0.203 Sum_probs=120.9
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc----
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR---- 283 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~---- 283 (489)
|+|.....+.+.+.+.... ....+|||+|++||||+++|++|.... +.||+.|+|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4677777777776665532 234689999999999999999998866 47999999987643211
Q ss_pred -cchH-------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCc
Q 011305 284 -GDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 347 (489)
Q Consensus 284 -g~~~-------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~ 347 (489)
|... ......+..| ..++|||||++.|... ++..|+..++.-. .....
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccc
Confidence 1000 0011123333 3489999999998654 4455666664321 11234
Q ss_pred EEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHh-cCCcHHH
Q 011305 348 VFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT-EGYSGSD 415 (489)
Q Consensus 348 viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t-~G~sg~D 415 (489)
+.+|++|+.. ..+.+.|..|+. .+.+..|...+|.+ ++.+++..... ...... .++++..
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~-------~~~~~~~~~ls~~a 206 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEHFAIRMAR-------ELGLPLFPGFTPQA 206 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHHHHHHHHH-------HhCCCCCCCcCHHH
Confidence 6778888654 235567777884 35566666666654 33343322100 000111 4678888
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhh
Q 011305 416 IRLVSKEAAMQPLRRLMVLLEGRQ 439 (489)
Q Consensus 416 i~~l~~~A~~~a~rR~~~~le~~~ 439 (489)
+..|.+..|.++++.+.+.++..-
T Consensus 207 ~~~L~~y~WPGNvrEL~n~i~~~~ 230 (329)
T TIGR02974 207 REQLLEYHWPGNVRELKNVVERSV 230 (329)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHH
Confidence 888888888888888877766543
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.31 E-value=5.6e-11 Score=135.73 Aligned_cols=205 Identities=21% Similarity=0.257 Sum_probs=132.9
Q ss_pred CccccCcHHHHHHHHHHHHccc---cCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh
Q 011305 208 WESIKGLENAKRLLKEAVVMPI---KYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 281 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l---~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~ 281 (489)
.+.|+|++.+++.+...+.... ..| ..|...+||+||+|||||++|+++|+.+ +.+++.++++++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~------~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~ 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDP------NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCC------CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhh
Confidence 4568999999999998886532 111 1222468999999999999999999987 567999999876432
Q ss_pred h-----ccchHH-----HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--c------c
Q 011305 282 W-----RGDSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--T------Q 343 (489)
Q Consensus 282 ~-----~g~~~~-----~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~--~------~ 343 (489)
. .|.... .-..+....+....+||+|||++.+.+. +++.|++.++.- . .
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~-------------v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPD-------------VFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHH-------------HHHHHHHHHhhCceecCCceEE
Confidence 1 111000 0011222333444589999999877433 556677777532 1 1
Q ss_pred CCCcEEEEEEeCCCC-------------------------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC-----
Q 011305 344 SDELVFVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ----- 393 (489)
Q Consensus 344 ~~~~viVIatTn~p~-------------------------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~----- 393 (489)
.-.+.+||+|||... .+.|+++.|++..+.|.+++.++...|++.++...
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~ 787 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLE 787 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 123466888998631 14578999999999999999999999988877542
Q ss_pred --CCCCCCC---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHH
Q 011305 394 --TGEESLP---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 394 --~~~~~~d---l~~La~~t--~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
+....++ ++.|++.. ..|-.+.|+.+++.-....+.+.
T Consensus 788 ~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~ 832 (857)
T PRK10865 788 ERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQ 832 (857)
T ss_pred hCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHH
Confidence 2222222 33344321 12346788888877776666543
No 159
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.30 E-value=1.5e-11 Score=124.65 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=95.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh--hccchHH----------HHHHHHHHHHhcCCcEEEEch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSEK----------LIKVLFELARHHAPSTIFLDE 309 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~--~~g~~~~----------~l~~lf~~A~~~~p~VL~IDE 309 (489)
.+++||.||||||||++++.+|+.++.+++.|++...... ..|...- .....+..|.. .+.+|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4789999999999999999999999999999988654433 3332111 11122333333 347899999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHH-----hcC---CccCCCcEEEEEEeCCCC------------cccHHHHhhcc
Q 011305 310 IDAIISQRGEARSEHEASRRLKTELLIQ-----MDG---LTQSDELVFVLAATNLPW------------ELDAAMLRRLE 369 (489)
Q Consensus 310 iD~l~~~r~~~~~~~~~~~~i~~~LL~~-----ldg---~~~~~~~viVIatTn~p~------------~Ld~al~rRf~ 369 (489)
+|...++.. ..++.+|.. +.+ .......+.||+|.|... .++.++++||.
T Consensus 143 in~a~p~~~----------~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~ 212 (327)
T TIGR01650 143 YDAGRPDVM----------FVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWS 212 (327)
T ss_pred hhccCHHHH----------HHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhee
Confidence 998755421 122233331 111 011233577899998753 27899999998
Q ss_pred cccccCCCCHHHHHHHHHHhcCC
Q 011305 370 KRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 370 ~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
..+.+..|+.++-.+|+......
T Consensus 213 i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 213 IVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred eEeeCCCCCHHHHHHHHHhhccC
Confidence 78899999999999999876543
No 160
>PHA02244 ATPase-like protein
Probab=99.29 E-value=2.2e-11 Score=124.77 Aligned_cols=127 Identities=23% Similarity=0.242 Sum_probs=80.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc----hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS----VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~----l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r 317 (489)
..+|||+||||||||++|+++|..++.+++.++... +.+ +..........-+..|. ..+++|+|||++.+.+..
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA 196 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH
Confidence 468999999999999999999999999999998531 111 11111111111122222 235899999999875442
Q ss_pred cccchhhHHHHHHHHHHH-----HHhcCCccCCCcEEEEEEeCCC-----------CcccHHHHhhcccccccCCCCHHH
Q 011305 318 GEARSEHEASRRLKTELL-----IQMDGLTQSDELVFVLAATNLP-----------WELDAAMLRRLEKRILVPLPDTEA 381 (489)
Q Consensus 318 ~~~~~~~~~~~~i~~~LL-----~~ldg~~~~~~~viVIatTn~p-----------~~Ld~al~rRf~~~i~~~~Pd~~e 381 (489)
.. .++.++ ...++.......+.+|+|+|.+ ..+++++++|| ..+.+..|+..|
T Consensus 197 q~----------~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~~E 265 (383)
T PHA02244 197 LI----------IINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEKIE 265 (383)
T ss_pred HH----------HHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcHHH
Confidence 11 111121 1222222233457889999974 45899999999 569999998433
No 161
>PRK09087 hypothetical protein; Validated
Probab=99.28 E-value=9.1e-11 Score=114.09 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=105.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~ 322 (489)
..++|+||+|+|||+|++++++..+.. +++..++.... +..... .+|+|||++.+...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~~~------ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDA-----------ANAAAE---GPVLIEDIDAGGFD------ 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHH-----------HHhhhc---CeEEEECCCCCCCC------
Confidence 459999999999999999999887654 34433322211 111111 58999999976311
Q ss_pred hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCC
Q 011305 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE 397 (489)
Q Consensus 323 ~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~ 397 (489)
..+|++.++.....+ ..+|++++..|.. ..+.+++||. ..+.+..|+.++|..+++..+.......
T Consensus 103 --------~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 --------ETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred --------HHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 122444443333333 3456655555543 3688999995 7788999999999999999998766554
Q ss_pred CCC-HHHHHHHhcCCcHHHHHHHHH---HHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 398 SLP-YDLLVERTEGYSGSDIRLVSK---EAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 398 ~~d-l~~La~~t~G~sg~Di~~l~~---~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
+.+ ++.|++... ++++.+.. .....+.. ..++||...++++++.+
T Consensus 174 ~~ev~~~La~~~~----r~~~~l~~~l~~L~~~~~~-------------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRME----RSLFAAQTIVDRLDRLALE-------------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHH-------------------hCCCCCHHHHHHHHHhh
Confidence 433 566676665 34443332 22211111 11358999999988765
No 162
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.28 E-value=2.7e-12 Score=121.82 Aligned_cols=45 Identities=47% Similarity=0.660 Sum_probs=37.1
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
|++|+|++.+|+.|.-+..- ++|+||+||||||||++|+.+..-+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999999865532 4799999999999999999999865
No 163
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.28 E-value=2.1e-10 Score=121.42 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=95.7
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEecc-chhhhhccc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS-SVVSKWRGD 285 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~--~~i~v~~s-~l~~~~~g~ 285 (489)
+.|+|.+++++.+...+. ...++||.||||||||++|++++..++. +|..+.+. .......|.
T Consensus 20 ~~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 368899999888886552 2478999999999999999999998743 44444432 111222221
Q ss_pred h-HHHH--HHHHHHHHhc---CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------cCCCcEEEEE
Q 011305 286 S-EKLI--KVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------QSDELVFVLA 352 (489)
Q Consensus 286 ~-~~~l--~~lf~~A~~~---~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-------~~~~~viVIa 352 (489)
. -... ..-|...... ...+||+|||..+.+ .+++.|+..|+.-. ..-+..++++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp-------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP-------------AILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCCH-------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 1 0000 1112211111 225999999976643 36677888884221 1112345556
Q ss_pred EeCCCCc---ccHHHHhhcccccccCCCC-HHHHHHHHHHh
Q 011305 353 ATNLPWE---LDAAMLRRLEKRILVPLPD-TEARRAMFESL 389 (489)
Q Consensus 353 tTn~p~~---Ld~al~rRf~~~i~~~~Pd-~~eR~~IL~~~ 389 (489)
|||.... ..+++..||...+.+|+|+ .++..+++...
T Consensus 153 ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 6675332 3468999998899999997 46667788764
No 164
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=2.8e-11 Score=133.79 Aligned_cols=179 Identities=25% Similarity=0.384 Sum_probs=134.0
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 011305 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (489)
Q Consensus 195 ~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------- 266 (489)
..+.+......-.++.++|.++.++++.+.+... ..++-+|.|+||+|||.++..+|...
T Consensus 156 y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~ 223 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPES 223 (786)
T ss_pred HhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHH
Confidence 3444555556778999999999999988877542 23678999999999999999999977
Q ss_pred --CCcEEEEeccchh--hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011305 267 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 342 (489)
Q Consensus 267 --~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~ 342 (489)
+..++.++.+.+. .+|.|+.+..++.+.+......+.||||||++.+.+.....+...+..+ ++.-.|
T Consensus 224 L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN-iLKPaL------- 295 (786)
T COG0542 224 LKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN-LLKPAL------- 295 (786)
T ss_pred HcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh-hhHHHH-------
Confidence 5778889888876 4799999999999999999888899999999999887543221122222 222222
Q ss_pred cCCCcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCC
Q 011305 343 QSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 395 (489)
Q Consensus 343 ~~~~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~ 395 (489)
.++. +-+|++|...+ .-|+||-||| ..|.+..|+.++-..||+..-..+..
T Consensus 296 ARGe-L~~IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 296 ARGE-LRCIGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEA 351 (786)
T ss_pred hcCC-eEEEEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHH
Confidence 2333 44566664332 3689999999 55999999999999999987654443
No 165
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.4e-10 Score=118.94 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=105.6
Q ss_pred CCccccC-cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------
Q 011305 207 KWESIKG-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------- 269 (489)
Q Consensus 207 ~~~dliG-~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------------- 269 (489)
.|+.|+| ++.+++.++..+.. ...++.+||+||+|+||+++|+++|+.+..+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4889999 89999999988743 2345678999999999999999999987321
Q ss_pred --------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011305 270 --------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (489)
Q Consensus 270 --------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ 337 (489)
+..+... +.. -.-..++.+.+... .....|++|||+|.+.. ...+.|++.
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~ 133 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-------------SAANSLLKF 133 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-------------HHHHHHHHH
Confidence 2222111 010 11223444443332 22346999999998843 356789999
Q ss_pred hcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHH
Q 011305 338 MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 388 (489)
Q Consensus 338 ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~ 388 (489)
++. .++.+++|.+|+.+..+.++++||+ ..++|+.|+.++...+++.
T Consensus 134 LEE---Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 134 LEE---PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hcC---CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 873 3445666778888899999999999 6699999999888777764
No 166
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.27 E-value=8.7e-11 Score=110.64 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=89.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeccchhhhhccchHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 296 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~------------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~ 296 (489)
.++.+||+||+|+|||++|+.+++.+... +..+.... . ......++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 34679999999999999999999987432 22222110 0 0112344444544
Q ss_pred HHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccc
Q 011305 297 ARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 372 (489)
Q Consensus 297 A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i 372 (489)
+.. ....|++|||+|.+... .++.|+..++.. +....+|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLEEP---PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhcCC---CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 433 33569999999988532 346688888743 234556667778889999999999 579
Q ss_pred ccCCCCHHHHHHHHHHh
Q 011305 373 LVPLPDTEARRAMFESL 389 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~ 389 (489)
.++.|+.++..++++..
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999999988876
No 167
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.26 E-value=4.2e-11 Score=130.62 Aligned_cols=216 Identities=26% Similarity=0.277 Sum_probs=133.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
.+..++++++|.+...+++.+.+.... ....+|||+|++||||+++|++|+... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 344678999999999998888776532 234689999999999999999999986 5799999998764
Q ss_pred hhhc-----cchHH-------HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--c--
Q 011305 280 SKWR-----GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q-- 343 (489)
Q Consensus 280 ~~~~-----g~~~~-------~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~-- 343 (489)
.... |.... .....+..+ ..++|||||++.|... ++..|+..++.-. .
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECC
Confidence 3211 10000 000112222 3489999999998654 4455666665321 0
Q ss_pred ----CCCcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHH----HHHHHHhcCCCCCCCCCCHHHHHHHh
Q 011305 344 ----SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEAR----RAMFESLLPSQTGEESLPYDLLVERT 408 (489)
Q Consensus 344 ----~~~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR----~~IL~~~l~~~~~~~~~dl~~La~~t 408 (489)
....+.+|++|+.. ..+.+.+..|+. .+.+..|...+| ..|+.+++...... ....
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~-------~~~~- 394 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRE-------NGRP- 394 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHH-------cCCC-
Confidence 11236677777654 124556666773 344555555444 34555554322110 0011
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHH
Q 011305 409 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 459 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~ 459 (489)
.+++...+..|.+..|.++++.+.+.++..-...+. ..|+.+|+.
T Consensus 395 ~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~~------~~I~~~~l~ 439 (534)
T TIGR01817 395 LTITPSAIRVLMSCKWPGNVRELENCLERTATLSRS------GTITRSDFS 439 (534)
T ss_pred CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC------CcccHHHCc
Confidence 357777888888888888888887777655432222 236666664
No 168
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.26 E-value=9.6e-11 Score=120.05 Aligned_cols=193 Identities=22% Similarity=0.238 Sum_probs=123.8
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh---
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 281 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~--- 281 (489)
+++++|.+...+.+.+.+.... ....+|||+|++||||+++|+++.... +.||+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 6789999988888888776643 234689999999999999999998766 479999999876321
Q ss_pred --hccchH-------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cC
Q 011305 282 --WRGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QS 344 (489)
Q Consensus 282 --~~g~~~-------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~ 344 (489)
..|... ......+..+ ..++|||||+|.|... ++..|+..++.-. ..
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 111100 0001123332 3489999999998654 4455666664321 11
Q ss_pred CCcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHH-----h
Q 011305 345 DELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER-----T 408 (489)
Q Consensus 345 ~~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~-----t 408 (489)
...+.||++|+.. ..+.+.+..||. .+.+..|+..+|.+ ++.+++.. ++.. .
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~-----------~~~~~~~~~~ 206 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQ-----------MCRELGLPLF 206 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHH-----------HHHHhCCCCC
Confidence 1246677777654 235677788883 35566666666654 44444322 1111 1
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 409 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
.++++..+..|.+..|.++++.+.+.++..
T Consensus 207 ~~~s~~al~~L~~y~WPGNvrEL~~vl~~a 236 (326)
T PRK11608 207 PGFTERARETLLNYRWPGNIRELKNVVERS 236 (326)
T ss_pred CCCCHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 367777778888888888888777766654
No 169
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.26 E-value=4.4e-10 Score=112.88 Aligned_cols=131 Identities=22% Similarity=0.178 Sum_probs=84.8
Q ss_pred CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC------------CCcccHHHHhhcc
Q 011305 302 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL------------PWELDAAMLRRLE 369 (489)
Q Consensus 302 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~------------p~~Ld~al~rRf~ 369 (489)
|+||||||++.|.-. .++-|-..|+ ..-.++ ||.+||+ |..++..+++|.
T Consensus 292 pGVLFIDEvHmLDIE-------------~FsFlnrAlE---se~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHMLDIE-------------CFSFLNRALE---SELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhhhHH-------------HHHHHHHHhh---cccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 678888888877322 2223333333 222334 5567764 456899999999
Q ss_pred cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCC
Q 011305 370 KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 448 (489)
Q Consensus 370 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~ 448 (489)
.+|...+++.++.++|++..+.......+. .++.|+.....-|-+.--+|+.-|...|-+| +.
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------g~---------- 417 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------GS---------- 417 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------CC----------
Confidence 778888999999999999999887776544 3666666555445555445555454444332 11
Q ss_pred CCCCCCHHHHHHHHhhhCCC
Q 011305 449 QIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 449 ~~~~It~eDf~~AL~~~~ps 468 (489)
..|..+|++.|-.-+-.+
T Consensus 418 --~~V~~~dVe~a~~lF~D~ 435 (450)
T COG1224 418 --KRVEVEDVERAKELFLDV 435 (450)
T ss_pred --CeeehhHHHHHHHHHhhH
Confidence 238899999987755443
No 170
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.24 E-value=3.2e-11 Score=130.54 Aligned_cols=159 Identities=26% Similarity=0.344 Sum_probs=102.4
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHH-----------hCCcEEEEe
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-----------CKTTFFNIS 274 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~e-----------l~~~~i~v~ 274 (489)
..|++++|.+...+.+++.+...- ....+|||+|++||||+++|+++.+. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 468899999999999888876532 23468999999999999999999987 367999999
Q ss_pred ccchhhhh-----ccchH--------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 275 ASSVVSKW-----RGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 275 ~s~l~~~~-----~g~~~--------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
|..+.... .|..+ ..-..+|+.|. .++||||||+.|... ++..|+..++.-
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~ 349 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-------------LQTRLLRVLEEK 349 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-------------HHHHHHhhhhcC
Confidence 98764321 11100 00112444443 379999999998654 445566666432
Q ss_pred c--------cCCCcEEEEEEeCCCC-c------ccHHHHhhcccccccCCCCHHHHHH----HHHHhcC
Q 011305 342 T--------QSDELVFVLAATNLPW-E------LDAAMLRRLEKRILVPLPDTEARRA----MFESLLP 391 (489)
Q Consensus 342 ~--------~~~~~viVIatTn~p~-~------Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~ 391 (489)
. ...-.+-+|++|+..- . +.+.+.-|+ ..+.+..|...+|.+ ++++++.
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~ 417 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLK 417 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHH
Confidence 1 1122356788887642 1 233444465 336667777766654 4444543
No 171
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.24 E-value=6.5e-11 Score=121.44 Aligned_cols=154 Identities=27% Similarity=0.345 Sum_probs=100.9
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh--hccchH
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSE 287 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~--~~g~~~ 287 (489)
.++|.++++..+...+. ...++||.||||||||++|+++|+.++.+|+.+.|...... ..|...
T Consensus 25 ~~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 47777777777665442 24789999999999999999999999999999998743321 122211
Q ss_pred HHHH----HHHHHHHh--cCC--cEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------cCCCcEEE
Q 011305 288 KLIK----VLFELARH--HAP--STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------QSDELVFV 350 (489)
Q Consensus 288 ~~l~----~lf~~A~~--~~p--~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~---------~~~~~viV 350 (489)
-... ..+..... ... +|+++|||+...+. +++.|+..|+... .-....+|
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~-------------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~v 157 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE-------------VQNALLEALEERQVTVPGLTTIRLPPPFIV 157 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCHH-------------HHHHHHHHHhCcEEEECCcCCcCCCCCCEE
Confidence 1110 00000000 000 39999999877543 5677777776411 12245777
Q ss_pred EEEeC-----CCCcccHHHHhhcccccccCCC-CHHHHHHHHHHhc
Q 011305 351 LAATN-----LPWELDAAMLRRLEKRILVPLP-DTEARRAMFESLL 390 (489)
Q Consensus 351 IatTn-----~p~~Ld~al~rRf~~~i~~~~P-d~~eR~~IL~~~l 390 (489)
|+|+| ....+++++++||...++++.| +..+...++....
T Consensus 158 iaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 158 IATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 88878 3345899999999988999999 5555555555444
No 172
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.24 E-value=8.7e-11 Score=127.15 Aligned_cols=217 Identities=21% Similarity=0.244 Sum_probs=132.1
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 281 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~ 281 (489)
..+|++++|.+...+.+.+.+...- ....+|||+|++||||+++|+++.+.. +.||+.++|..+...
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 3568999999999999888776532 234689999999999999999999865 679999999876432
Q ss_pred h-----ccchH--------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011305 282 W-----RGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 342 (489)
Q Consensus 282 ~-----~g~~~--------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------ 342 (489)
. .|..+ .....+|+.|. .+.|||||++.|... ++..|+..++.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCC
Confidence 1 11100 01122344443 379999999998654 4455666664321
Q ss_pred --cCCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhc
Q 011305 343 --QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE 409 (489)
Q Consensus 343 --~~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~ 409 (489)
...-.+-+|++|+..- .+.+.+..|+. .+.+..|+..+|.+ ++.+++....... -.
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~----------~~ 410 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAAL----------RL 410 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHc----------CC
Confidence 1112346777876642 13334444652 35666676666654 4444443321110 11
Q ss_pred CCcHHHHHH-------HHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 011305 410 GYSGSDIRL-------VSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 461 (489)
Q Consensus 410 G~sg~Di~~-------l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~A 461 (489)
++++..+.. |.+..|.++++.+.+.++..-....... ...|+.+|+...
T Consensus 411 ~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~---~~~I~~~~l~~~ 466 (526)
T TIGR02329 411 PDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMP---AGALTPDVLRAL 466 (526)
T ss_pred CCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCC---CCccCHHHhhhh
Confidence 355555555 8888888888888777766543221100 123777776543
No 173
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.23 E-value=1.1e-10 Score=126.69 Aligned_cols=202 Identities=21% Similarity=0.243 Sum_probs=121.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
.....|++++|.+...+++.+.+...- .....|||+|++||||+++|+++.... +.||+.++|+.+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 456789999999988887777665422 223579999999999999999998765 4799999998764
Q ss_pred hhhc-----cchH-------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--c--
Q 011305 280 SKWR-----GDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q-- 343 (489)
Q Consensus 280 ~~~~-----g~~~-------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~-- 343 (489)
.... |... .....+|+.|. .++|||||+|.+.+. ++..|+..++.-. .
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCC
Confidence 3211 1100 00112344333 389999999998654 3445666554321 1
Q ss_pred ----CCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHh
Q 011305 344 ----SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT 408 (489)
Q Consensus 344 ----~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t 408 (489)
....+.||++|+.+- .+.+.+..|+.. +.+..|...+|.+ ++..++........ ...
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g-------~~~ 403 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQG-------VPR 403 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcC-------CCC
Confidence 112356787776642 245667778743 6666776666653 33333322110000 001
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 409 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
.+++..-+..|.+..|.++++.+.+.++..
T Consensus 404 ~~ls~~a~~~L~~y~WPGNvreL~nvl~~a 433 (520)
T PRK10820 404 PKLAADLNTVLTRYGWPGNVRQLKNAIYRA 433 (520)
T ss_pred CCcCHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 245666666666666666666666555543
No 174
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.22 E-value=4.6e-12 Score=113.20 Aligned_cols=110 Identities=29% Similarity=0.343 Sum_probs=69.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh------hhhcc---chHHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------SKWRG---DSEKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~------~~~~g---~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
+|||+||||||||++|+.+|+.++.+++.++++... +.+.- .....-..+....+ .+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 589999999999999999999999999999886532 11110 00000000000111 45899999998764
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCcc----------CCC------cEEEEEEeCCCC----cccHHHHhhc
Q 011305 315 SQRGEARSEHEASRRLKTELLIQMDGLTQ----------SDE------LVFVLAATNLPW----ELDAAMLRRL 368 (489)
Q Consensus 315 ~~r~~~~~~~~~~~~i~~~LL~~ldg~~~----------~~~------~viVIatTn~p~----~Ld~al~rRf 368 (489)
+. ++..|+..++.-.. ... .+.+|+|+|... .+++++++||
T Consensus 79 ~~-------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 PE-------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp HH-------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred HH-------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 32 45556666653211 111 388999999988 7999999998
No 175
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=1.8e-10 Score=117.91 Aligned_cols=131 Identities=19% Similarity=0.272 Sum_probs=93.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEEeccchhhhhccchHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKT------------------------TFFNISASSVVSKWRGDSEKLIKVLFE 295 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~------------------------~~i~v~~s~l~~~~~g~~~~~l~~lf~ 295 (489)
..++.+||+||+|+|||++|+++|+.+.. .++.+...+- ++ .-.-..++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 34578999999999999999999998843 1233322110 00 011234444444
Q ss_pred HHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccc
Q 011305 296 LAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 371 (489)
Q Consensus 296 ~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~ 371 (489)
.+. .....|++||++|.+.. ...+.||+.++. .+..+++|.+|++++.+.+.++||+. .
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~-------------~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SRc~-~ 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR-------------NAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSRCQ-Q 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH-------------HHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhhce-e
Confidence 333 33457999999999853 356889999873 33557788899999999999999994 4
Q ss_pred cccCCCCHHHHHHHHHHhc
Q 011305 372 ILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 372 i~~~~Pd~~eR~~IL~~~l 390 (489)
+.|+.|+.++-.+.+....
T Consensus 160 ~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 160 QACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eeCCCcCHHHHHHHHHHhc
Confidence 9999999999888887654
No 176
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.21 E-value=1.5e-10 Score=128.81 Aligned_cols=197 Identities=19% Similarity=0.207 Sum_probs=120.7
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 280 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~ 280 (489)
+..+|++++|.+...+.+.+.+.... ....+|||+|++||||+++|+++.+.. +.||+.++|..+..
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 34579999999988888877765533 233679999999999999999999876 47999999987632
Q ss_pred h-----hccch----HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--cC-----
Q 011305 281 K-----WRGDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QS----- 344 (489)
Q Consensus 281 ~-----~~g~~----~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~~----- 344 (489)
. ..|.. .......|+.| ..++||||||+.+... ++..|+..++.-. ..
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 1 11111 00000112222 3489999999998654 4455666654221 00
Q ss_pred -CCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHH---hc
Q 011305 345 -DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER---TE 409 (489)
Q Consensus 345 -~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~---t~ 409 (489)
.-.+.||+||+..- .+.+.+.-|+ ..+.+..|...+|.+ ++..++... +.. ..
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~-----------~~~~~~~~ 521 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSL-----------EKRFSTRL 521 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHH-----------HHHhCCCC
Confidence 11466788887642 2344455566 346677777777753 344443221 111 12
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 410 GYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
+++...+..|.+..|.++++.+.+.++..
T Consensus 522 ~~s~~a~~~L~~y~WPGNvreL~~~l~~~ 550 (638)
T PRK11388 522 KIDDDALARLVSYRWPGNDFELRSVIENL 550 (638)
T ss_pred CcCHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 45666666666666666666666655543
No 177
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.2e-10 Score=113.11 Aligned_cols=155 Identities=27% Similarity=0.351 Sum_probs=96.6
Q ss_pred cEEEEchhhhHHhhhcccchhhHHHH-HHHHHHHHHhcCCcc-------CCCcEEEEEEe----CCCCcccHHHHhhccc
Q 011305 303 STIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEK 370 (489)
Q Consensus 303 ~VL~IDEiD~l~~~r~~~~~~~~~~~-~i~~~LL~~ldg~~~-------~~~~viVIatT----n~p~~Ld~al~rRf~~ 370 (489)
+|+||||||.++...+.+.. +.++ -++-.||-.++|..- ..+.+++|++. ..|+.|-|.|.-||+.
T Consensus 252 GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 59999999999987653221 3333 466778888877642 23568888775 6778899999999999
Q ss_pred ccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhHH-------HHHHHHHhhhhh
Q 011305 371 RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQP-------LRRLMVLLEGRQ 439 (489)
Q Consensus 371 ~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G----~sg~Di~~l~~~A~~~a-------~rR~~~~le~~~ 439 (489)
.+++...+.++-..||..--.. .-..+..|. .|+| |+-..|..+..-|...+ +||+...++..-
T Consensus 330 RVEL~~Lt~~Df~rILtep~~s----LikQY~aLl-kTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL 404 (444)
T COG1220 330 RVELDALTKEDFERILTEPKAS----LIKQYKALL-KTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL 404 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchH----HHHHHHHHH-hhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 9999999999988887531100 000011111 1222 56666666666655433 477777666543
Q ss_pred cc----CCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 440 EV----APDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 440 ~~----~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
+- .|+-. .....|+.+-+.+.|..+
T Consensus 405 ediSFeA~d~~-g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 405 EDISFEAPDMS-GQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred HHhCccCCcCC-CCeEEEcHHHHHHHHHHH
Confidence 32 22222 222358888888777544
No 178
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=3e-11 Score=125.93 Aligned_cols=204 Identities=23% Similarity=0.244 Sum_probs=122.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 280 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~ 280 (489)
+...+..|||...+..++.+.+...- ....+|||.|.+||||..+||+|.+.. +.||+.+||+.+..
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 35578899999999999988876632 344789999999999999999999987 68999999976643
Q ss_pred hh---------ccchHHHH---HHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcE
Q 011305 281 KW---------RGDSEKLI---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 348 (489)
Q Consensus 281 ~~---------~g~~~~~l---~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~v 348 (489)
.. .|.....+ +.-|+.|. .+.||+|||..|...-|.+ ..+.+++.-++.+.+-....-.|
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGelPL~lQaK-----LLRvLQegEieRvG~~r~ikVDV 359 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGELPLALQAK-----LLRVLQEGEIERVGGDRTIKVDV 359 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecC---CCeEechhhccCCHHHHHH-----HHHHHhhcceeecCCCceeEEEE
Confidence 21 12111111 12233333 3799999998887653322 11223333233232222222348
Q ss_pred EEEEEeCCCCcccHHHHh-hcc-------cccccCCCCHHHHHH----HHHHhc----CCCCC-CCCCC---HHHHHHHh
Q 011305 349 FVLAATNLPWELDAAMLR-RLE-------KRILVPLPDTEARRA----MFESLL----PSQTG-EESLP---YDLLVERT 408 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~r-Rf~-------~~i~~~~Pd~~eR~~----IL~~~l----~~~~~-~~~~d---l~~La~~t 408 (489)
-||++||+ .|..+++. +|. ..+.+..|...+|.. +.++++ ...+. ....+ ++.|.+..
T Consensus 360 RiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~ 437 (550)
T COG3604 360 RVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYE 437 (550)
T ss_pred EEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCC
Confidence 89999998 55555554 332 234455576666653 222222 22232 12222 33333333
Q ss_pred cCCcHHHHHHHHHHHHhHH
Q 011305 409 EGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~~a 427 (489)
---+.+++++++.+|+..+
T Consensus 438 wPGNVRELen~veRavlla 456 (550)
T COG3604 438 WPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCcHHHHHHHHHHHHHHh
Confidence 3335688888888888755
No 179
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.18 E-value=3.8e-10 Score=122.42 Aligned_cols=197 Identities=22% Similarity=0.237 Sum_probs=118.3
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh-
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 282 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~- 282 (489)
...+++|.....+.+.+.+...- ....+|||+|++||||+++|+++.... +.||+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 57889999999999888876632 334789999999999999999999976 5799999998764321
Q ss_pred ----ccchHH-------HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------c
Q 011305 283 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 343 (489)
Q Consensus 283 ----~g~~~~-------~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~ 343 (489)
.|.... .....|..| ..++|||||+|.|... ++..|+..++.-. .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCCcc
Confidence 111000 001123333 3489999999998654 3455666554221 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 344 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 344 ~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
....+-||++|+..- .+.+.+..|+. .+.+..|+..+|.+ ++++++...... +.....+++
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~-------~~~~~~~~s 390 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRAR-------LGLRSLRLS 390 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHH-------cCCCCCCCC
Confidence 122467888887642 25556666663 35566776666654 333333221100 000112455
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhh
Q 011305 413 GSDIRLVSKEAAMQPLRRLMVLLEG 437 (489)
Q Consensus 413 g~Di~~l~~~A~~~a~rR~~~~le~ 437 (489)
...+..|.+..|.++++.+.+.++.
T Consensus 391 ~~a~~~L~~y~WPGNvrEL~~~i~r 415 (509)
T PRK05022 391 PAAQAALLAYDWPGNVRELEHVISR 415 (509)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 5555555555555555555554443
No 180
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.17 E-value=1.2e-10 Score=101.35 Aligned_cols=128 Identities=30% Similarity=0.412 Sum_probs=81.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEeccchhhh--------------hccchHHHHHHHHHHHHhcCCcE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSK--------------WRGDSEKLIKVLFELARHHAPST 304 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~---~i~v~~s~l~~~--------------~~g~~~~~l~~lf~~A~~~~p~V 304 (489)
+.+++|+||||||||++++.+|..+... ++.+++...... ...........++..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999999765 888887654322 11234456677888888877899
Q ss_pred EEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-CCcccHHHHhhcccccccCCC
Q 011305 305 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWELDAAMLRRLEKRILVPLP 377 (489)
Q Consensus 305 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~-p~~Ld~al~rRf~~~i~~~~P 377 (489)
|+|||++.+............ ........ ........+|+++|. ....+..+..|++..+.++.+
T Consensus 82 iiiDei~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLL----EELRLLLL----LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHHHhh----hhhHHHHH----HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999998655321100000 00000011 112233567888885 334555566677777766554
No 181
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.17 E-value=2.1e-10 Score=128.71 Aligned_cols=197 Identities=22% Similarity=0.293 Sum_probs=117.9
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 281 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~ 281 (489)
+..|++++|.+...+.+.+.+.... ....+|||+|++|||||++|+++.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 3568899999999999888776532 234689999999999999999999866 579999999876322
Q ss_pred -----hccc--------hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011305 282 -----WRGD--------SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 342 (489)
Q Consensus 282 -----~~g~--------~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------ 342 (489)
..|. .... ...+..+. .++|||||++.+... ++..|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~-~g~le~a~---~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQR-IGRFELAD---KSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccch-hhHHHhcC---CCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCC
Confidence 1111 1111 12233333 489999999998654 4455666654321
Q ss_pred --cCCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhc
Q 011305 343 --QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE 409 (489)
Q Consensus 343 --~~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~ 409 (489)
.....+.+|++|+..- .+...+..|+ ..+.+..|+..+|.+ +++.++.+..... .+...
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~~~ 576 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRM-------GRNID 576 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc-------CCCCC
Confidence 1123467888887642 1334455565 335667777777765 3444432211100 00112
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 410 GYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
+++...+..|.+..|.++++.+.+.++
T Consensus 577 ~~s~~al~~L~~y~WPGNvrEL~~~i~ 603 (686)
T PRK15429 577 SIPAETLRTLSNMEWPGNVRELENVIE 603 (686)
T ss_pred CcCHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 345555555555555555555544443
No 182
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.17 E-value=9.6e-10 Score=121.20 Aligned_cols=53 Identities=36% Similarity=0.543 Sum_probs=45.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
.|..-|++++|++++++.++..+.. .++++|+||||||||++++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4556789999999999999887643 2589999999999999999999998644
No 183
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.17 E-value=2.8e-10 Score=105.69 Aligned_cols=121 Identities=26% Similarity=0.347 Sum_probs=77.5
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh-----
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----- 282 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~----- 282 (489)
|+|.+...+.+.+.+..... .+.+|||+|++||||+++|++|.+.. +.||+.|+|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 57777778887777765433 33789999999999999999999976 5799999998764331
Q ss_pred ccch-------HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCc
Q 011305 283 RGDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 347 (489)
Q Consensus 283 ~g~~-------~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~ 347 (489)
.|.. ......++..|.. ++||||||+.|.+. ++..|+..++.-. ...-.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccccccccc
Confidence 1110 0111245555555 89999999999755 4556666665221 11235
Q ss_pred EEEEEEeCCC
Q 011305 348 VFVLAATNLP 357 (489)
Q Consensus 348 viVIatTn~p 357 (489)
+.||++|+.+
T Consensus 135 ~RiI~st~~~ 144 (168)
T PF00158_consen 135 VRIIASTSKD 144 (168)
T ss_dssp EEEEEEESS-
T ss_pred ceEEeecCcC
Confidence 7888888863
No 184
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.16 E-value=4e-10 Score=118.40 Aligned_cols=145 Identities=21% Similarity=0.276 Sum_probs=90.0
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEEec----c
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------FFNISA----S 276 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~-------~i~v~~----s 276 (489)
++++++.+...+.+...+. ..++++|+||||||||++|+.+|..+... .+.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 5677777777777765543 24789999999999999999999988431 223322 1
Q ss_pred chhhhhc-cc-h----HHHHHHHHHHHHh--cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC--------
Q 011305 277 SVVSKWR-GD-S----EKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------- 340 (489)
Q Consensus 277 ~l~~~~~-g~-~----~~~l~~lf~~A~~--~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg-------- 340 (489)
+++..+. +. . ......+...|.. ..|.+|+|||++.....+ +..+++..++.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccc
Confidence 2222221 10 0 1123334455554 357899999998764332 22333333331
Q ss_pred -----------CccCCCcEEEEEEeCCCC----cccHHHHhhcccccccCC-CCH
Q 011305 341 -----------LTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPL-PDT 379 (489)
Q Consensus 341 -----------~~~~~~~viVIatTn~p~----~Ld~al~rRf~~~i~~~~-Pd~ 379 (489)
.-..+.++.||+|+|..+ .+|.|++|||.. +.+.+ ++.
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p~~~~ 361 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEPGFDT 361 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe-EEecCCCCh
Confidence 112346799999999987 699999999954 55543 443
No 185
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.15 E-value=1.1e-10 Score=108.70 Aligned_cols=114 Identities=25% Similarity=0.316 Sum_probs=76.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEeccchhhhhccchHHHHHHHHHHH----HhcCCcEEEEchhhh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKT----TFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDA 312 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~----~~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~ 312 (489)
|..++||.||+|||||.+|+++|+.+.. +++.++++++.... +....+..+...+ ......||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4467999999999999999999999996 99999999887611 1111122222111 111225999999999
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHhcCCcc--------CCCcEEEEEEeCCCC
Q 011305 313 IISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELVFVLAATNLPW 358 (489)
Q Consensus 313 l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--------~~~~viVIatTn~p~ 358 (489)
+.+.. ..........+++.||+.+++-.- .-.++++|+|+|--.
T Consensus 80 a~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSN--SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTT--TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccc--cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 98852 223344455788999999874321 124688999998754
No 186
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=4.7e-11 Score=118.19 Aligned_cols=131 Identities=27% Similarity=0.416 Sum_probs=91.7
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcc-----cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTG-----LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWR 283 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~-----~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~ 283 (489)
-++|++.+|+.|.-++..+ |..+... ..-...++||.||+|||||.||+.+|+.+++||..-++..|.. .|+
T Consensus 62 YVIGQe~AKKvLsVAVYNH--YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYV 139 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNH--YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYV 139 (408)
T ss_pred heecchhhhceeeeeehhH--HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcccc
Confidence 4899999999887544332 2222111 1122368999999999999999999999999999999988864 577
Q ss_pred cc-hHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhh-HHHHHHHHHHHHHhcCCc
Q 011305 284 GD-SEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEH-EASRRLKTELLIQMDGLT 342 (489)
Q Consensus 284 g~-~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~-~~~~~i~~~LL~~ldg~~ 342 (489)
|+ .+..+..++..|. ....+|++|||||.++.+..+.+.-. -...-++.+||..++|..
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTv 204 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTV 204 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCce
Confidence 76 3444455554431 23348999999999998764433222 223458889999998763
No 187
>PRK04132 replication factor C small subunit; Provisional
Probab=99.14 E-value=9.2e-10 Score=123.94 Aligned_cols=147 Identities=19% Similarity=0.154 Sum_probs=109.5
Q ss_pred CCceEEEEc--CCCCcHHHHHHHHHHHh-----CCcEEEEeccchhhhhccchHHHHHHHHHHHHhc------CCcEEEE
Q 011305 241 PWKGILLFG--PPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHH------APSTIFL 307 (489)
Q Consensus 241 ~~~~vLL~G--ppGtGKT~lAralA~el-----~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~------~p~VL~I 307 (489)
|+-+-+..| |++.||||+|+++|+++ +.+++++|+++..+. ..++.+...+... +..|++|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 334456779 99999999999999998 568999999985322 2444444433322 2369999
Q ss_pred chhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHH
Q 011305 308 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 387 (489)
Q Consensus 308 DEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~ 387 (489)
||+|.|... .++.|+..|+.. +..+.+|++||+++.+.++++||| ..+.|+.|+.++....++
T Consensus 637 DEaD~Lt~~-------------AQnALLk~lEep---~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 637 DEADALTQD-------------AQQALRRTMEMF---SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ECcccCCHH-------------HHHHHHHHhhCC---CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence 999998532 467788888733 345778889999999999999999 668999999999988888
Q ss_pred HhcCCCCCCC-CCCHHHHHHHhcC
Q 011305 388 SLLPSQTGEE-SLPYDLLVERTEG 410 (489)
Q Consensus 388 ~~l~~~~~~~-~~dl~~La~~t~G 410 (489)
..+...+... +..+..++..+.|
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCC
Confidence 8877655542 3346667776666
No 188
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.13 E-value=4.7e-11 Score=123.75 Aligned_cols=196 Identities=19% Similarity=0.178 Sum_probs=117.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVV 279 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~ 279 (489)
....+++|+|.+...+++++.+.. ..+...+||++|++||||+.+|+.|+... +.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 344588999999988888888766 12445789999999999999999998644 6799999998775
Q ss_pred hhhcc-----c-------hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC------
Q 011305 280 SKWRG-----D-------SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------ 341 (489)
Q Consensus 280 ~~~~g-----~-------~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~------ 341 (489)
..... . ....-..+|+.|.. ++||+|||..+.+. .+..|+..+|.-
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-------------HHHHHHHHHHcCceEecC
Confidence 43221 0 11112234444444 79999999999765 334466666532
Q ss_pred --ccCCCcEEEEEEeCCC--CcccH--HHHh-hcccccccCCCCHHHH----HHHHHHhcC----CCCCCCCCCHHHHHH
Q 011305 342 --TQSDELVFVLAATNLP--WELDA--AMLR-RLEKRILVPLPDTEAR----RAMFESLLP----SQTGEESLPYDLLVE 406 (489)
Q Consensus 342 --~~~~~~viVIatTn~p--~~Ld~--al~r-Rf~~~i~~~~Pd~~eR----~~IL~~~l~----~~~~~~~~dl~~La~ 406 (489)
......|.+|++|+.. +.+-. .+.+ |+...|. +|+..+| ..+++++++ +.+.....+..+..+
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~--LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTIT--LPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceec--CCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 1234457788887653 22333 4444 4545555 4544444 345555543 223322222222222
Q ss_pred Hhc----CCcHHHHHHHHHHHHhHH
Q 011305 407 RTE----GYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 407 ~t~----G~sg~Di~~l~~~A~~~a 427 (489)
... --+.++++++++.+...+
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 222 224567777666666543
No 189
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.12 E-value=4.8e-10 Score=103.49 Aligned_cols=133 Identities=23% Similarity=0.286 Sum_probs=87.6
Q ss_pred CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------c
Q 011305 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------T 269 (489)
Q Consensus 213 G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-----------------------~ 269 (489)
|++.+++.|...+.. ...++.+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 788899999887755 234577999999999999999999998721 1
Q ss_pred EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 270 FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 270 ~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
++.++...-.. .-....++.+..... .....|++|||+|.+.. ...+.||..|+ ..+
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE---epp 130 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE---EPP 130 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH---STT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc---CCC
Confidence 33333221100 012234445444432 23456999999999853 36788999997 344
Q ss_pred CcEEEEEEeCCCCcccHHHHhhcccccccCC
Q 011305 346 ELVFVLAATNLPWELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 346 ~~viVIatTn~p~~Ld~al~rRf~~~i~~~~ 376 (489)
..+.+|.+|++++.+-+.++||+ ..+.++.
T Consensus 131 ~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 56788889999999999999999 4465554
No 190
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.11 E-value=4.4e-09 Score=104.17 Aligned_cols=190 Identities=17% Similarity=0.245 Sum_probs=113.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-CcEE--E-Eec----cchh----hhh----ccch-HHHHHHH----HHHHHhcC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK-TTFF--N-ISA----SSVV----SKW----RGDS-EKLIKVL----FELARHHA 301 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~-~~~i--~-v~~----s~l~----~~~----~g~~-~~~l~~l----f~~A~~~~ 301 (489)
..++|+||+|+|||++++.+++++. ..+. . +++ .++. ..+ .+.. ......+ ........
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999875 2222 1 111 1111 110 1111 1111222 22233456
Q ss_pred CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-cCCCcEEEEEEeCCCC---cc----cHHHHhhcccccc
Q 011305 302 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLPW---EL----DAAMLRRLEKRIL 373 (489)
Q Consensus 302 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-~~~~~viVIatTn~p~---~L----d~al~rRf~~~i~ 373 (489)
+.+|+|||++.+... ....+ ..+-... .....+.|+.+. .++ .+ ...+.+|+...++
T Consensus 124 ~~vliiDe~~~l~~~-------------~~~~l-~~l~~~~~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~r~~~~~~ 188 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-------------LLEEL-RMLSNFQTDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQRIIASCH 188 (269)
T ss_pred CeEEEEECcccCCHH-------------HHHHH-HHHhCcccCCCCeEEEEEcC-CHHHHHHHcCchhHHHHhheeeeee
Confidence 679999999987432 11112 1121111 122223333333 332 11 2356778888899
Q ss_pred cCCCCHHHHHHHHHHhcCCCCCC-----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCC
Q 011305 374 VPLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 448 (489)
Q Consensus 374 ~~~Pd~~eR~~IL~~~l~~~~~~-----~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~ 448 (489)
++..+.++..+++...+...+.. .+..++.|.+.+.|.. +.|..++..+...+..+-
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~----------------- 250 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE----------------- 250 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC-----------------
Confidence 99999999999998887644321 2234677888888875 559899998888765531
Q ss_pred CCCCCCHHHHHHHHhhhC
Q 011305 449 QIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 449 ~~~~It~eDf~~AL~~~~ 466 (489)
...|+.++++.++..++
T Consensus 251 -~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 -KREIGGEEVREVIAEID 267 (269)
T ss_pred -CCCCCHHHHHHHHHHhh
Confidence 12499999999998765
No 191
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=8.5e-10 Score=115.39 Aligned_cols=146 Identities=25% Similarity=0.334 Sum_probs=110.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc-chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s-~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~ 318 (489)
.+-.++||+||||+|||.||-.+|...+.||+.+-.. ++.+-.-...-..++.+|+.|....-+||++|+++.|..-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~-- 613 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY-- 613 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--
Confidence 3446799999999999999999999999999987554 4333221112245789999999988899999999998642
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH-HHHhhcccccccCCCCH-HHHHHHHHH
Q 011305 319 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEKRILVPLPDT-EARRAMFES 388 (489)
Q Consensus 319 ~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~-al~rRf~~~i~~~~Pd~-~eR~~IL~~ 388 (489)
.......+..++.+|+..+......+...+|++||.+.+-|.. .+...|+..+.+|..+. ++..+++..
T Consensus 614 -vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 614 -VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred -cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 2233455677888999999877777788989998887655532 56778999999988755 556666554
No 192
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.09 E-value=1.3e-09 Score=120.02 Aligned_cols=132 Identities=18% Similarity=0.233 Sum_probs=90.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhhhhccchH--HHHH--------HHHHHHHhcCCcEEEEchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSE--KLIK--------VLFELARHHAPSTIFLDEI 310 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~~~~g~~~--~~l~--------~lf~~A~~~~p~VL~IDEi 310 (489)
.+|||.|+||||||++|+++++.+. .||+.+..........|... ..+. .++.. ...++|||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~---A~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDE---APRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeee---CCCCcEeccch
Confidence 6899999999999999999999875 46888875333333333321 0000 01111 12369999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCCC---cccHHHHhhcccccccCC-
Q 011305 311 DAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW---ELDAAMLRRLEKRILVPL- 376 (489)
Q Consensus 311 D~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~~~~viVIatTn~p~---~Ld~al~rRf~~~i~~~~- 376 (489)
+.+.+. +++.|+..|+.-. ..+..+.||+|+|..+ .+.+++.+||...+.+..
T Consensus 94 ~rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~ 160 (589)
T TIGR02031 94 NLLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDV 160 (589)
T ss_pred hhCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCC
Confidence 988644 5667777775221 1123577888888765 589999999998776654
Q ss_pred CCHHHHHHHHHHhc
Q 011305 377 PDTEARRAMFESLL 390 (489)
Q Consensus 377 Pd~~eR~~IL~~~l 390 (489)
|+.++|.+|++..+
T Consensus 161 ~~~~er~eil~~~~ 174 (589)
T TIGR02031 161 ASQDLRVEIVRRER 174 (589)
T ss_pred CCHHHHHHHHHHHH
Confidence 57888999998876
No 193
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=8.5e-09 Score=105.21 Aligned_cols=128 Identities=13% Similarity=0.209 Sum_probs=91.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeccchhhhhccchHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 296 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~------------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~ 296 (489)
.++.+||+||+|+||+++|+++|+.+... ++.+...+ ++. -.-..++.+.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHHH
Confidence 45789999999999999999999987321 22222110 110 122334444333
Q ss_pred H----HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccc
Q 011305 297 A----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 372 (489)
Q Consensus 297 A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i 372 (489)
+ ......|++||++|.+.. ...+.||+.++ .++..+++|.+|+.++.+.+.++||+ ..+
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~-------------~AaNaLLKtLE---EPp~~~~fiL~t~~~~~llpTI~SRC-~~~ 161 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTE-------------AAANALLKTLE---EPRPNTYFLLQADLSAALLPTIYSRC-QTW 161 (325)
T ss_pred HhhccccCCceEEEEechhhhCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChHhCchHHHhhc-eEE
Confidence 3 233446999999999853 35688999997 34556778889999999999999999 568
Q ss_pred ccCCCCHHHHHHHHHHh
Q 011305 373 LVPLPDTEARRAMFESL 389 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~ 389 (489)
.|+.|+.++..+.|...
T Consensus 162 ~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 99999999888877764
No 194
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.07 E-value=8.6e-10 Score=118.67 Aligned_cols=145 Identities=28% Similarity=0.354 Sum_probs=92.0
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC------------------
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------------------ 267 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~------------------ 267 (489)
..|+++.|++.+++.+.-.+ ...++++|.||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 36899999999987766433 2347899999999999999999987431
Q ss_pred ----------CcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011305 268 ----------TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (489)
Q Consensus 268 ----------~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ 337 (489)
.||...+++.......|.........+..|.. ++|||||++.+.. .++..|++.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~-------------~~~~~L~~~ 318 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKR-------------SVLDALREP 318 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCH-------------HHHHHHHHH
Confidence 22222222211111112111111112333333 8999999987743 355666666
Q ss_pred hcCCc----------cCCCcEEEEEEeCCC------C-----------------cccHHHHhhcccccccCCCCHH
Q 011305 338 MDGLT----------QSDELVFVLAATNLP------W-----------------ELDAAMLRRLEKRILVPLPDTE 380 (489)
Q Consensus 338 ldg~~----------~~~~~viVIatTn~p------~-----------------~Ld~al~rRf~~~i~~~~Pd~~ 380 (489)
|+.-. ..+..+.+|+++|.- . .+...+++||+..+.++.++.+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 64321 112457788888852 1 3788999999999999988765
No 195
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.06 E-value=4.7e-09 Score=102.43 Aligned_cols=177 Identities=16% Similarity=0.230 Sum_probs=125.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-C--CcE------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K--TTF------ 270 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~--~~~------ 270 (489)
...+.+.+++.+.+.++....|+..... ..-.++|+|||+|+||-|.+.++-+++ | .+=
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lksl~~~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~ 71 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKSLSST------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETR 71 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHHhccc------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeE
Confidence 3456677888999999999998875531 122589999999999999999999988 2 111
Q ss_pred --------------------EEEeccchhhhhccchH-HHHHHHHHHHHhcC---------CcEEEEchhhhHHhhhccc
Q 011305 271 --------------------FNISASSVVSKWRGDSE-KLIKVLFELARHHA---------PSTIFLDEIDAIISQRGEA 320 (489)
Q Consensus 271 --------------------i~v~~s~l~~~~~g~~~-~~l~~lf~~A~~~~---------p~VL~IDEiD~l~~~r~~~ 320 (489)
++++.++ .|.-. -.++.+.....+.+ ..|++|.|+|.|..+
T Consensus 72 t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d---- 142 (351)
T KOG2035|consen 72 TFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD---- 142 (351)
T ss_pred EEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH----
Confidence 1222222 23222 23455555443322 359999999999644
Q ss_pred chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 011305 321 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP 400 (489)
Q Consensus 321 ~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d 400 (489)
.+.+|-..|+.+. ..+-+|..+|..+.+-++++||+ ..+.+|.|+.++...++...+.+.++....+
T Consensus 143 ---------AQ~aLRRTMEkYs---~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 143 ---------AQHALRRTMEKYS---SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred ---------HHHHHHHHHHHHh---cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHH
Confidence 4456667776443 33557778999999999999999 6799999999999999999999888876544
Q ss_pred -HHHHHHHhcC
Q 011305 401 -YDLLVERTEG 410 (489)
Q Consensus 401 -l~~La~~t~G 410 (489)
+..+++.+.|
T Consensus 210 ~l~rIa~kS~~ 220 (351)
T KOG2035|consen 210 LLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHhcc
Confidence 4556665554
No 196
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.06 E-value=5.2e-09 Score=104.54 Aligned_cols=223 Identities=20% Similarity=0.287 Sum_probs=128.5
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccchhh
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS 280 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~l~~ 280 (489)
.-||...+++.|... ...+.+|.. ....++||+|++|.|||++++.++... ..|++.+.+..-.+
T Consensus 35 rWIgY~~A~~~L~~L-~~Ll~~P~~-----~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRL-EELLEYPKR-----HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHH-HHHHhCCcc-----cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 345666655555442 222333321 234689999999999999999999755 35777776532211
Q ss_pred --------------hh--ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC
Q 011305 281 --------------KW--RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 344 (489)
Q Consensus 281 --------------~~--~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~ 344 (489)
.+ .....+....+....+..++.+|+|||++.+...... . +.++++.+..+.+.
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~------~----qr~~Ln~LK~L~Ne 178 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR------K----QREFLNALKFLGNE 178 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH------H----HHHHHHHHHHHhhc
Confidence 11 0123333444556667778899999999997643211 1 22233333333222
Q ss_pred CCcEEEEEE-eCCC---CcccHHHHhhcccccccCCC-CHHHHHHHHHHhcCCCCCCCC--CC---H-HHHHHHhcCCcH
Q 011305 345 DELVFVLAA-TNLP---WELDAAMLRRLEKRILVPLP-DTEARRAMFESLLPSQTGEES--LP---Y-DLLVERTEGYSG 413 (489)
Q Consensus 345 ~~~viVIat-Tn~p---~~Ld~al~rRf~~~i~~~~P-d~~eR~~IL~~~l~~~~~~~~--~d---l-~~La~~t~G~sg 413 (489)
-. +.+|+. |... -.-|+.+.+||.. +.+|.- ..++...++..+-...++... .. + ..|-..+.|.+|
T Consensus 179 L~-ipiV~vGt~~A~~al~~D~QLa~RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 179 LQ-IPIVGVGTREAYRALRTDPQLASRFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred cC-CCeEEeccHHHHHHhccCHHHHhccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 22 223333 3222 1257899999944 555653 334455666666555555422 22 2 335556777664
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 414 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 414 ~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
++..+++.|+..|++. +.+ -||.+.+.+ +.-+.||-.
T Consensus 257 -~l~~ll~~aA~~AI~s------G~E------------~It~~~l~~-~~~~~ps~R 293 (302)
T PF05621_consen 257 -ELSRLLNAAAIAAIRS------GEE------------RITREILDK-IDWVPPSER 293 (302)
T ss_pred -HHHHHHHHHHHHHHhc------CCc------------eecHHHHhh-CCCcChhhh
Confidence 8899999999988763 111 288888865 666666654
No 197
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.05 E-value=1.2e-09 Score=111.30 Aligned_cols=66 Identities=36% Similarity=0.421 Sum_probs=47.0
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchh
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVV 279 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~ 279 (489)
.-+.++|+.++++.+--.+.+-.. ..-.++++||.||||||||.+|-++|+++| .||+.++++++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 356899999999998755544221 122458999999999999999999999996 888888776654
No 198
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.05 E-value=2.8e-09 Score=117.21 Aligned_cols=203 Identities=12% Similarity=0.133 Sum_probs=118.4
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-Eecc
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISAS 276 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~-v~~s 276 (489)
.+..++.+.++++|+|++...+.|+.++..... ...+.+.++|+||||||||++++.+|++++..+++ ++..
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 456677888999999999999999988754221 12334569999999999999999999998765543 1111
Q ss_pred ---chhhhh------------ccchHHHHHHHHHHHHh----------cCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 277 ---SVVSKW------------RGDSEKLIKVLFELARH----------HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 277 ---~l~~~~------------~g~~~~~l~~lf~~A~~----------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
.....| ........+.++..+.. ....||+|||++.+.... ...+
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----------~~~l 215 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----------TRAL 215 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----------HHHH
Confidence 000000 01122333444444431 234699999999876431 1122
Q ss_pred HHHHH-HhcCCccCCCcEEEEEEeCCCC--------------cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCC
Q 011305 332 TELLI-QMDGLTQSDELVFVLAATNLPW--------------ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQT 394 (489)
Q Consensus 332 ~~LL~-~ldg~~~~~~~viVIatTn~p~--------------~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 394 (489)
..++. ... ......+|+++|..+. .+.+++++ |. ..|.|.+.+.....+.|+..+....
T Consensus 216 q~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~ 291 (637)
T TIGR00602 216 HEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEA 291 (637)
T ss_pred HHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 33333 211 1222233444442222 13478886 55 4689999999997777777776542
Q ss_pred CC--CC------CCHHHHHHHhcCCcHHHHHHHHHHHHh
Q 011305 395 GE--ES------LPYDLLVERTEGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 395 ~~--~~------~dl~~La~~t~G~sg~Di~~l~~~A~~ 425 (489)
.. .+ ..++.|+.. +.+|++.++.....
T Consensus 292 ~~~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf 326 (637)
T TIGR00602 292 KKNGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQF 326 (637)
T ss_pred hccccccccCCHHHHHHHHHh----CCChHHHHHHHHHH
Confidence 21 11 234455553 34577766654444
No 199
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=5.5e-09 Score=107.31 Aligned_cols=132 Identities=16% Similarity=0.216 Sum_probs=91.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeccch-hhhhccchHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSV-VSKWRGDSEKLIKVLF 294 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~------------------------~i~v~~s~l-~~~~~g~~~~~l~~lf 294 (489)
..++.+||+||+|+||+++|.++|+.+-+. ++.+....- ..-.+++.....+.+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 445789999999999999999999987321 222221100 0011222222222333
Q ss_pred HHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccccc
Q 011305 295 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILV 374 (489)
Q Consensus 295 ~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~ 374 (489)
.........|++||++|.+.. ...|.||+.++ .++..+++|..|++++.+.+.++||+. .+.|
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTD-------------AAANALLKTLE---EPPENTWFFLACREPARLLATLRSRCR-LHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChhhChHHHHhccc-cccC
Confidence 333334457999999999853 35688999997 345567788899999999999999995 5899
Q ss_pred CCCCHHHHHHHHHH
Q 011305 375 PLPDTEARRAMFES 388 (489)
Q Consensus 375 ~~Pd~~eR~~IL~~ 388 (489)
+.|+.++....|..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (334)
T PRK07993 165 APPPEQYALTWLSR 178 (334)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999888887764
No 200
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.05 E-value=1.3e-09 Score=118.20 Aligned_cols=166 Identities=25% Similarity=0.262 Sum_probs=100.0
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcc-cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----eccchhhhhc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR 283 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~-~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v----~~s~l~~~~~ 283 (489)
.+|.|++.+|..+.-.+...... ....+ ......+|||+|+||||||++|+++++.+....+.. ++..+.....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 47899999988887555332111 00000 122335899999999999999999999875433221 2222211100
Q ss_pred cc---hHHHH-HHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEE
Q 011305 284 GD---SEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVF 349 (489)
Q Consensus 284 g~---~~~~l-~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~~~~vi 349 (489)
.+ .+..+ ...+..| ..++++|||+|.+... .+..|+..|+.-. ..+....
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 00 00000 0011112 2379999999998543 3455666664211 1224577
Q ss_pred EEEEeCCCC-------------cccHHHHhhccccc-ccCCCCHHHHHHHHHHhcC
Q 011305 350 VLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 350 VIatTn~p~-------------~Ld~al~rRf~~~i-~~~~Pd~~eR~~IL~~~l~ 391 (489)
||||+|..+ .+++++++||+..+ ....|+.+...+|.++.+.
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 898998652 48999999997654 4577899999999988653
No 201
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=7.7e-09 Score=105.34 Aligned_cols=170 Identities=17% Similarity=0.154 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------------EEE
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------------FFN 272 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------------------~i~ 272 (489)
+..+.+.+...+.. ..-++.+||+||+|+||+++|.++|+.+-+. ++.
T Consensus 9 ~~~~~~~l~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDA-----------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 34566666665533 2345689999999999999999999977321 222
Q ss_pred Ee-ccchhhhh--ccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 273 IS-ASSVVSKW--RGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 273 v~-~s~l~~~~--~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
+. ..+-.++. ..-.-..++.+.+.+.. ....|++||++|.+.. ...|.||+.++. .+
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLEE---Pp 141 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR-------------AACNALLKTLEE---PS 141 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH-------------HHHHHHHHHhhC---CC
Confidence 21 00000000 00112344554443332 2336999999999843 356889999873 34
Q ss_pred CcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 011305 346 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 416 (489)
Q Consensus 346 ~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di 416 (489)
..+++|.+|+.++.+.+.++||+ ..+.|+.|+.++-...|... +.. ..+...++..+.|-.+..+
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 45667778899999999999999 56899999998888777642 211 1223345555666554443
No 202
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=2.5e-08 Score=101.62 Aligned_cols=144 Identities=16% Similarity=0.123 Sum_probs=98.8
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------cE
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------TF 270 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-----------------------~~ 270 (489)
+....+.+...+.. ...++.+||+||.|+||+++|+++|+.+-. .+
T Consensus 8 l~~~~~~l~~~~~~-----------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 8 LVPVWQNWKAGLDA-----------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 34566666665533 234578999999999999999999997722 12
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCC
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 346 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~ 346 (489)
+.+.... .++.. .-..++.+.+.+. .....|++||++|.+.. ...|.||+.++ ..+.
T Consensus 77 ~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~ 137 (319)
T PRK06090 77 HVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE-------------SASNALLKTLE---EPAP 137 (319)
T ss_pred EEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhCH-------------HHHHHHHHHhc---CCCC
Confidence 3332211 00101 1223444433332 23347999999999853 35688999997 3455
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHH
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 388 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~ 388 (489)
++++|..|++++.+-+.++||+ ..+.|+.|+.++..+.+..
T Consensus 138 ~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 5778889999999999999999 5689999999988887765
No 203
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.99 E-value=2.4e-10 Score=100.40 Aligned_cols=106 Identities=30% Similarity=0.365 Sum_probs=59.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc-chhh-hhccc----hHH-----HHHHHHHHHHhcCCcEEEEchhhh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVVS-KWRGD----SEK-----LIKVLFELARHHAPSTIFLDEIDA 312 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s-~l~~-~~~g~----~~~-----~l~~lf~~A~~~~p~VL~IDEiD~ 312 (489)
||||+|+||+|||++|+++|+.++..|..|.+. ++.. ...|. .+. .-.-+| ..|+++||++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999988764 3321 11111 000 000111 15999999988
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCcEEEEEEeCCCC-----cccHHHHhhcc
Q 011305 313 IISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPW-----ELDAAMLRRLE 369 (489)
Q Consensus 313 l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~viVIatTn~p~-----~Ld~al~rRf~ 369 (489)
..++ +++.||+.|..-. .-++..+||||-|..+ .|++++++||-
T Consensus 74 appk-------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 74 APPK-------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp S-HH-------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred CCHH-------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 7655 5667777775321 2345688888888765 48999999983
No 204
>PRK12377 putative replication protein; Provisional
Probab=98.99 E-value=2e-09 Score=105.98 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=82.3
Q ss_pred cCCCCCCCcccc----CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEE
Q 011305 201 RGSPDVKWESIK----GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 273 (489)
Q Consensus 201 ~~~~~~~~~dli----G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v 273 (489)
......+|++.. |+..++..++..+..+. ....+++|+||||||||+||.++++++ +..++.+
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 344566788875 33334444454443321 123689999999999999999999988 6778888
Q ss_pred eccchhhhhccchH--HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 011305 274 SASSVVSKWRGDSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 274 ~~s~l~~~~~g~~~--~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVI 351 (489)
+..++......... .....++... ....+|+|||+...... .. ....|...++.-.... ..+|
T Consensus 136 ~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s--------~~---~~~~l~~ii~~R~~~~--~pti 200 (248)
T PRK12377 136 TVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET--------KN---EQVVLNQIIDRRTASM--RSVG 200 (248)
T ss_pred EHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC--------HH---HHHHHHHHHHHHHhcC--CCEE
Confidence 88877654321100 0111223222 34579999999664321 11 1233444444222222 2256
Q ss_pred EEeCCCCc-----ccHHHHhhc
Q 011305 352 AATNLPWE-----LDAAMLRRL 368 (489)
Q Consensus 352 atTn~p~~-----Ld~al~rRf 368 (489)
.|||.... +..++.+|+
T Consensus 201 itSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 201 MLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred EEcCCCHHHHHHHhhHHHHHHH
Confidence 68987622 455666666
No 205
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.98 E-value=2.1e-09 Score=114.40 Aligned_cols=195 Identities=21% Similarity=0.275 Sum_probs=116.6
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 283 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~ 283 (489)
.+.+++|.....+.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 4567888887777777665432 1234679999999999999999999876 47899999987633211
Q ss_pred cchHHHHHHHHHH---------------HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011305 284 GDSEKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 342 (489)
Q Consensus 284 g~~~~~l~~lf~~---------------A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------ 342 (489)
-..+|.. ......++|||||++.|... ++..|+..++.-.
T Consensus 207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~ 267 (445)
T TIGR02915 207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGG 267 (445)
T ss_pred ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCC
Confidence 1111110 11123489999999998654 4455666554221
Q ss_pred --cCCCcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhc
Q 011305 343 --QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE 409 (489)
Q Consensus 343 --~~~~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~ 409 (489)
.....+.+|++|+.. ..+.+.+..|+ ..+.+..|...+|.+ ++++++...... ..+...
T Consensus 268 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~-------~~~~~~ 339 (445)
T TIGR02915 268 REEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARE-------LKRKTK 339 (445)
T ss_pred CceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHH-------hCCCCC
Confidence 111246677777665 23556677777 346677777777765 333333221100 000113
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 410 GYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
++++..+..|.+..|.++++.+.+.++..
T Consensus 340 ~~~~~a~~~L~~~~wpgNvreL~~~i~~a 368 (445)
T TIGR02915 340 GFTDDALRALEAHAWPGNVRELENKVKRA 368 (445)
T ss_pred CCCHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 45566666666666666666655555443
No 206
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=3.1e-09 Score=109.17 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=92.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------------------------EEEEeccchh---------------
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT-------------------------FFNISASSVV--------------- 279 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~-------------------------~i~v~~s~l~--------------- 279 (489)
..++.+||+||+|+||+++|+++|+.+.+. ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 345789999999999999999999988432 1222111000
Q ss_pred ---hhh-----ccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCc
Q 011305 280 ---SKW-----RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347 (489)
Q Consensus 280 ---~~~-----~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~ 347 (489)
++. ..-.-..++.+..... .....|++||++|.+... ..|.||+.++ ..+..
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLE---EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-------------AANALLKTLE---EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH-------------HHHHHHHHhc---CCCcC
Confidence 000 0001123444444332 223469999999998533 5688999987 35556
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHh
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 389 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~ 389 (489)
+++|.+|++++.+.+.++||+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 778889999999999999999 67999999999998888764
No 207
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.3e-09 Score=113.91 Aligned_cols=47 Identities=45% Similarity=0.647 Sum_probs=40.5
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..|.||+|++.+|+.+.... ..++|+|++||||||||++|+.+..-+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 36899999999999999654 345899999999999999999987754
No 208
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.98 E-value=3.9e-09 Score=113.18 Aligned_cols=213 Identities=21% Similarity=0.197 Sum_probs=132.2
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 283 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~ 283 (489)
.+.+++|.....+.+.+.+... ......++++|++|||||++|++++... +.||+.++|..+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4678999887777777665432 2234679999999999999999999986 57999999987632211
Q ss_pred cchHHHHHHHHHH---------------HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011305 284 GDSEKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 342 (489)
Q Consensus 284 g~~~~~l~~lf~~---------------A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------ 342 (489)
-..+|.. ......+.|||||+|.+... .+..|+..++.-.
T Consensus 206 ------~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 206 ------ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGG 266 (469)
T ss_pred ------HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCC
Confidence 1112111 01223479999999998654 3445666665321
Q ss_pred --cCCCcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhc
Q 011305 343 --QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE 409 (489)
Q Consensus 343 --~~~~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~ 409 (489)
.....+.+|+||+.. ..+.+.+..|+. .+.+..|...+|.+ ++.+++...... ......
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~ 338 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIRVHLPPLRERREDIPRLARHFLQVAARE-------LGVEAK 338 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-ceeecCCCcccchhhHHHHHHHHHHHHHHH-------cCCCCC
Confidence 111235677777654 235677777883 35555665555544 555554321110 001123
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 462 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL 462 (489)
++++..+..|.+..|.++++.+.+.++......+. ..|+.+|+...+
T Consensus 339 ~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~~------~~i~~~~l~~~~ 385 (469)
T PRK10923 339 LLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAG------QEVLIQDLPGEL 385 (469)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC------CcccHHHCcHhh
Confidence 67888888888888888888888877765443322 236677765433
No 209
>PRK08116 hypothetical protein; Validated
Probab=98.95 E-value=3.4e-09 Score=105.69 Aligned_cols=123 Identities=18% Similarity=0.228 Sum_probs=74.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc----hHHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~----~~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
..+++|+|++|||||+||.++++++ +.+++.++.+++....... .......+++... ...+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4679999999999999999999987 7889999988876543211 1111222333222 34699999995421
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC-c----ccHHHHhhc---ccccccCCCCH
Q 011305 315 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-E----LDAAMLRRL---EKRILVPLPDT 379 (489)
Q Consensus 315 ~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~-~----Ld~al~rRf---~~~i~~~~Pd~ 379 (489)
. . ...+..|+..++....... .+|.|||.+. . ++.++.+|+ ...+.++-+|.
T Consensus 192 ~--------t---~~~~~~l~~iin~r~~~~~--~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 D--------T---EWAREKVYNIIDSRYRKGL--PTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred C--------C---HHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 1 1 1123445555553322222 3566888762 2 467788885 23344555553
No 210
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.95 E-value=1.9e-08 Score=103.80 Aligned_cols=162 Identities=25% Similarity=0.336 Sum_probs=104.4
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec---------
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------- 275 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~--------- 275 (489)
+..|..++|++..|..|--..+.| .-.++||.|+.||||||++|+++.-+.---....|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 345889999999999887543332 23789999999999999999999987211111111
Q ss_pred ----cc-------------------hhhhhccchHH----------HHHH---HHH---HHHhcCCcEEEEchhhhHHhh
Q 011305 276 ----SS-------------------VVSKWRGDSEK----------LIKV---LFE---LARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 276 ----s~-------------------l~~~~~g~~~~----------~l~~---lf~---~A~~~~p~VL~IDEiD~l~~~ 316 (489)
.+ ++..-.|.++. .++. .|. .++.+. +||++||+..|..+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR-GIlYvDEvnlL~d~ 159 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR-GILYVDEVNLLDDH 159 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC-CEEEEeccccccHH
Confidence 00 00000112222 1110 110 122233 79999999887533
Q ss_pred hcccchhhHHHHHHHHHHHHHhc---------CCc-cCCCcEEEEEEeCCCC-cccHHHHhhcccccccCCC-CHHHHHH
Q 011305 317 RGEARSEHEASRRLKTELLIQMD---------GLT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRA 384 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ld---------g~~-~~~~~viVIatTn~p~-~Ld~al~rRf~~~i~~~~P-d~~eR~~ 384 (489)
+++.||+.+. |++ ..+..+++|+|+|.-+ .|-+.|++||...+.+..| +.++|.+
T Consensus 160 -------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 160 -------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred -------------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHH
Confidence 6666766654 332 2344577888877653 4899999999999988776 8889999
Q ss_pred HHHHhcCC
Q 011305 385 MFESLLPS 392 (489)
Q Consensus 385 IL~~~l~~ 392 (489)
|++..+..
T Consensus 227 Ii~r~~~f 234 (423)
T COG1239 227 IIRRRLAF 234 (423)
T ss_pred HHHHHHHh
Confidence 99987754
No 211
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.94 E-value=7.5e-09 Score=111.18 Aligned_cols=144 Identities=26% Similarity=0.311 Sum_probs=90.4
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEec------c
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA------S 276 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~------s 276 (489)
.|.++.|+..+++.+.-. ....++++|.||||+|||++++.++..+. ...+.+.. .
T Consensus 189 d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~ 254 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA 254 (506)
T ss_pred CeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence 678889988777765421 23457899999999999999999998652 11111111 0
Q ss_pred -----ch-----h--------hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHh
Q 011305 277 -----SV-----V--------SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 338 (489)
Q Consensus 277 -----~l-----~--------~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~l 338 (489)
.+ . ...+|.....-...+..|.. ++|||||++.+.. .++..|++.|
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~~-------------~~~~~L~~~L 318 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFER-------------RTLDALREPI 318 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCCH-------------HHHHHHHHHH
Confidence 00 0 00112111111223444444 8999999977643 3556677666
Q ss_pred cCCc----------cCCCcEEEEEEeCCCC---------------------cccHHHHhhcccccccCCCCHH
Q 011305 339 DGLT----------QSDELVFVLAATNLPW---------------------ELDAAMLRRLEKRILVPLPDTE 380 (489)
Q Consensus 339 dg~~----------~~~~~viVIatTn~p~---------------------~Ld~al~rRf~~~i~~~~Pd~~ 380 (489)
+.-. ..+..+.+|+|+|... .++.++++||+..+.++.|+.+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 4221 1234578899998752 3777999999999999988654
No 212
>PRK15115 response regulator GlrR; Provisional
Probab=98.94 E-value=4.3e-08 Score=104.38 Aligned_cols=193 Identities=21% Similarity=0.261 Sum_probs=114.1
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~ 286 (489)
.++|.......+.+.+.... .....++++|++|||||++|+++.+.. +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~--- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL--- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH---
Confidence 46776655555544443321 223579999999999999999999876 57999999987633211
Q ss_pred HHHHHHHHHH---------------HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------c
Q 011305 287 EKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 343 (489)
Q Consensus 287 ~~~l~~lf~~---------------A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~ 343 (489)
-..+|.. ......++|||||+|.|... .+..|+..++.-. .
T Consensus 202 ---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~~~ 265 (444)
T PRK15115 202 ---ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSNRD 265 (444)
T ss_pred ---HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCCce
Confidence 1112211 11123479999999998655 3445666554221 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 344 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 344 ~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
....+.+|++|+..- .+.+.+..|+ ..+.+..|...+|.+ +++.++...... ..+...+++
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~-------~~~~~~~~~ 337 (444)
T PRK15115 266 IDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALAERTEDIPLLANHLLRQAAER-------HKPFVRAFS 337 (444)
T ss_pred eeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChHhccccHHHHHHHHHHHHHHH-------hCCCCCCcC
Confidence 112467788887531 2334444455 336677788878764 233333221100 000123567
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhh
Q 011305 413 GSDIRLVSKEAAMQPLRRLMVLLEGRQ 439 (489)
Q Consensus 413 g~Di~~l~~~A~~~a~rR~~~~le~~~ 439 (489)
..-+..|.+..|.++++++.+.++..-
T Consensus 338 ~~a~~~L~~~~WpgNvreL~~~i~~~~ 364 (444)
T PRK15115 338 TDAMKRLMTASWPGNVRQLVNVIEQCV 364 (444)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 777777888888888877777666543
No 213
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.93 E-value=3.1e-08 Score=107.17 Aligned_cols=230 Identities=21% Similarity=0.213 Sum_probs=142.4
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeccch
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSV 278 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~~s~l 278 (489)
+.|.+.+....++...+...+.-. ..+..+++.|-||||||.+++.+-+++ ...+++||+-.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 345566666666666665544320 122468999999999999999999876 356888988766
Q ss_pred hhh----------hccc------hHHHHHHHHHHH-HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 279 VSK----------WRGD------SEKLIKVLFELA-RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 279 ~~~----------~~g~------~~~~l~~lf~~A-~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
.+. +.|+ .-..+..-|... ....++||+|||+|.|....+ +-|++.++..
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-------------HHHHHHhcCC
Confidence 532 1111 111222223211 234568999999999986532 3477788888
Q ss_pred ccCCCcEEEEEEeCCCCc----ccHHHHhhcc-cccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 011305 342 TQSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 416 (489)
Q Consensus 342 ~~~~~~viVIatTn~p~~----Ld~al~rRf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di 416 (489)
...+..++||+.+|..+. |...+.+|.+ ..+.|.+++..+..+|+...+.....-....++-+|+.....|| |.
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG-Da 614 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG-DA 614 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc-cH
Confidence 778888888888887654 3334445654 56889999999999999999877622222223334444444444 22
Q ss_pred H---HHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 417 R---LVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 417 ~---~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
+ .+|++|+..+-.+.. .. .......|++-|+.+|++.+..+..
T Consensus 615 Rraldic~RA~Eia~~~~~--------~~---k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNV--------KG---KLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred HHHHHHHHHHHHHhhhhcc--------cc---cccccceeehHHHHHHHHHHhhhhH
Confidence 2 244444443332211 00 1112234899999999999977643
No 214
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.92 E-value=1.4e-08 Score=101.14 Aligned_cols=168 Identities=18% Similarity=0.171 Sum_probs=113.6
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc------E
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------F 270 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~------~ 270 (489)
..+.+++++-.++++++++++...+.+..... .-.+.|+|||||||||+...+.|..+-.+ +
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~ 96 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMP------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSML 96 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCC------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHH
Confidence 34667788888999999999999998874331 12499999999999999999999998553 2
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHh-------cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARH-------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 343 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~-------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~ 343 (489)
..+++++-.+. + .-+.-...|..++. ..+..+++||+|++..+ .+++|-..++.+
T Consensus 97 lelnaSd~rgi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~-------------AQnALRRviek~-- 158 (360)
T KOG0990|consen 97 LELNASDDRGI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD-------------AQNALRRVIEKY-- 158 (360)
T ss_pred HHhhccCccCC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHH-------------HHHHHHHHHHHh--
Confidence 23333332221 1 12222334544442 35689999999999655 334444444322
Q ss_pred CCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC
Q 011305 344 SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 396 (489)
Q Consensus 344 ~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~ 396 (489)
..++.++..+|.+..+.+++++||.. +.|.+.+...-...+.++.......
T Consensus 159 -t~n~rF~ii~n~~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 159 -TANTRFATISNPPQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred -ccceEEEEeccChhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcchhh
Confidence 23344556789999999999999955 6666667666677777777655544
No 215
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.92 E-value=1.5e-08 Score=108.11 Aligned_cols=197 Identities=22% Similarity=0.275 Sum_probs=113.2
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 283 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~ 283 (489)
.+..++|.......+.+.+.... ....++|++|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 34568887776666655544322 234689999999999999999998875 58999999987643211
Q ss_pred -----cchHH-------HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------c
Q 011305 284 -----GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 343 (489)
Q Consensus 284 -----g~~~~-------~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~ 343 (489)
|.... .....+.. ...++|||||+|.+... ++..|+..++.-. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~ 274 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQT 274 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 10000 00011222 23479999999998654 3455666654321 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 344 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 344 ~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
....+.||++|+..- .+.+.+..|+. .+.+..|+..+|.+ ++..++...... ......+++
T Consensus 275 ~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~-------~~~~~~~~~ 346 (457)
T PRK11361 275 IKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIHLILPPLRDRREDISLLANHFLQKFSSE-------NQRDIIDID 346 (457)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhhchhhHHHHHHHHHHHHHHH-------cCCCCCCcC
Confidence 112467888887642 35566666773 36777787777754 333333221100 000113455
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhh
Q 011305 413 GSDIRLVSKEAAMQPLRRLMVLLEG 437 (489)
Q Consensus 413 g~Di~~l~~~A~~~a~rR~~~~le~ 437 (489)
...+..+...-|.++++.+.+.++.
T Consensus 347 ~~a~~~L~~~~wpgNv~eL~~~~~~ 371 (457)
T PRK11361 347 PMAMSLLTAWSWPGNIRELSNVIER 371 (457)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 5555555555555555555554443
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.91 E-value=3.4e-08 Score=101.35 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=49.8
Q ss_pred Cc-cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEEec
Q 011305 208 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISA 275 (489)
Q Consensus 208 ~~-dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-------~~i~v~~ 275 (489)
|+ +++|+++++.++.+.+..... +.....+.++|+||||||||++|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 66 899999999999888766442 11233467899999999999999999999965 8887765
No 217
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.87 E-value=7.9e-08 Score=94.56 Aligned_cols=94 Identities=23% Similarity=0.231 Sum_probs=61.7
Q ss_pred CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-------------CCcccHHHHhh
Q 011305 301 APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-------------PWELDAAMLRR 367 (489)
Q Consensus 301 ~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~-------------p~~Ld~al~rR 367 (489)
-|+||||||++.|.- +....|-..++ ..-.++ ||.+||+ |..+++.+++|
T Consensus 296 vPGVLFIDEVhMLDi-------------EcFTyL~kalE---S~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDI-------------ECFTYLHKALE---SPIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhhhh-------------HHHHHHHHHhc---CCCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 478999999987732 23444545554 222334 5556664 45588999999
Q ss_pred cccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCc
Q 011305 368 LEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYS 412 (489)
Q Consensus 368 f~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~s 412 (489)
. .+|..-.++.++-++|++......++..+.+ ++.++.....-|
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ts 403 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTS 403 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchh
Confidence 9 6677777888888899999888777765443 555555443333
No 218
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.86 E-value=1e-08 Score=109.70 Aligned_cols=212 Identities=19% Similarity=0.187 Sum_probs=128.0
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhcc
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRG 284 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g 284 (489)
...++|.......+.+.+.... .....+++.|.+||||+++|+++.... +.+|+.++|..+.....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~- 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI- 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH-
Confidence 3568888777777766554421 233679999999999999999999875 57999999987643211
Q ss_pred chHHHHHHHHH---------------HHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------
Q 011305 285 DSEKLIKVLFE---------------LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------- 342 (489)
Q Consensus 285 ~~~~~l~~lf~---------------~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------- 342 (489)
-..+|. ......+++|||||++.+... ++..|+..++.-.
T Consensus 202 -----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~ 263 (463)
T TIGR01818 202 -----ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGR 263 (463)
T ss_pred -----HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCC
Confidence 011111 011223589999999998654 3445665554221
Q ss_pred -cCCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHH----HHHHHHHhcCCCCCCCCCCHHHHHHHhcC
Q 011305 343 -QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEA----RRAMFESLLPSQTGEESLPYDLLVERTEG 410 (489)
Q Consensus 343 -~~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~e----R~~IL~~~l~~~~~~~~~dl~~La~~t~G 410 (489)
.....+.||++|+..- .+.+.+..|+.. +.+..|...+ ...++.+++...... ......+
T Consensus 264 ~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLr~R~~Di~~l~~~~l~~~~~~-------~~~~~~~ 335 (463)
T TIGR01818 264 TPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNV-IRIHLPPLRERREDIPRLARHFLALAARE-------LDVEPKL 335 (463)
T ss_pred ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCc-ceecCCCcccchhhHHHHHHHHHHHHHHH-------hCCCCCC
Confidence 1112356777776542 355677777742 4445554444 444555554322110 0011246
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 011305 411 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 462 (489)
Q Consensus 411 ~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL 462 (489)
++...+..|.+.-|.++++.+.+.++..-..... ..|+.+|+...+
T Consensus 336 ~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~------~~i~~~~l~~~~ 381 (463)
T TIGR01818 336 LDPEALERLKQLRWPGNVRQLENLCRWLTVMASG------DEVLVSDLPAEL 381 (463)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC------CcccHHhchHHH
Confidence 7888888888888888888887777665443222 236777775544
No 219
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=6.1e-09 Score=106.97 Aligned_cols=99 Identities=26% Similarity=0.496 Sum_probs=74.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh-hhhccc-hHHHHHHHHHHHH----hcCCcEEEEchhhhHHhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRGD-SEKLIKVLFELAR----HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~-~~~~g~-~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~ 316 (489)
.+|||.||+|+|||+||+.+|+-+++||...+|..+. ..|+|+ .+..+..++..|. ..+.+|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 6899999999999999999999999999999999886 467775 5556666665542 234489999999999854
Q ss_pred hcccch-hhHHHHHHHHHHHHHhcCC
Q 011305 317 RGEARS-EHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 317 r~~~~~-~~~~~~~i~~~LL~~ldg~ 341 (489)
...-.. ..-..+-++..||..++|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 322111 1222345788999999865
No 220
>PRK08181 transposase; Validated
Probab=98.86 E-value=1.7e-08 Score=100.50 Aligned_cols=126 Identities=20% Similarity=0.285 Sum_probs=75.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch-HHHHHHHHHHHHhcCCcEEEEchhhhHHhhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAIISQR 317 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~-~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r 317 (489)
..+++|+||||||||+||.++++++ |..+++++..++........ .......+... ..+.+|+|||++.+....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~~ 183 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKDQ 183 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCCH
Confidence 4689999999999999999999866 77888899888876542111 01122233322 345799999998764331
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc----------ccHHHHhhcc---cccccCCCCHHHHH
Q 011305 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE----------LDAAMLRRLE---KRILVPLPDTEARR 383 (489)
Q Consensus 318 ~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~----------Ld~al~rRf~---~~i~~~~Pd~~eR~ 383 (489)
. ....|++.++..... . .+|.|||.+.. +..++.+|+- ..+.+.-.|...+.
T Consensus 184 ~-----------~~~~Lf~lin~R~~~-~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R~~~ 248 (269)
T PRK08181 184 A-----------ETSVLFELISARYER-R--SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRT 248 (269)
T ss_pred H-----------HHHHHHHHHHHHHhC-C--CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccchhHH
Confidence 1 122344444322222 2 25668887622 3356677763 33555555544433
No 221
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=2.4e-07 Score=96.42 Aligned_cols=237 Identities=18% Similarity=0.224 Sum_probs=146.0
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEeccchhhh--
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASSVVSK-- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~v~~s~l~~~-- 281 (489)
..++|.+.-+..+++++..++. ...+.++.+.|-||||||.+..-+..... ...++++|.++...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 5789999999999999888664 34457899999999999999987766552 24588888764311
Q ss_pred --------h----cc-chHHHHHHHHHH-HHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCC
Q 011305 282 --------W----RG-DSEKLIKVLFEL-ARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 346 (489)
Q Consensus 282 --------~----~g-~~~~~l~~lf~~-A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~ 346 (489)
+ .+ .........|.. .... .+-|+++||+|.|....+. + |+..++.-.-.+.
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~----------v---Ly~lFewp~lp~s 288 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT----------V---LYTLFEWPKLPNS 288 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc----------e---eeeehhcccCCcc
Confidence 1 11 112222223322 2222 2568999999999854322 1 2233332344556
Q ss_pred cEEEEEEeCCCCcccHHHHh---hc---ccccccCCCCHHHHHHHHHHhcCCCCCCCCCC--HHHHHHHhcCCcHHHHHH
Q 011305 347 LVFVLAATNLPWELDAAMLR---RL---EKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIRL 418 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~r---Rf---~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d--l~~La~~t~G~sg~Di~~ 418 (489)
.+++|+.+|..+.-|..|-+ |. ...+.|++++.++..+|+...+.........+ ++-.|++..|.|| |++.
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRk 367 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRK 367 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHH
Confidence 68888889987765543333 22 46789999999999999999998876654443 5667888888886 7765
Q ss_pred HH---HHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCCh
Q 011305 419 VS---KEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 469 (489)
Q Consensus 419 l~---~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~ 469 (489)
++ +.|.-.+-........ ....+.+.-.....|..+++..+++++-.+.
T Consensus 368 aLdv~R~aiEI~E~e~r~~~~--~~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 368 ALDVCRRAIEIAEIEKRKILD--DPLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccc--cCCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 43 3333222111111100 0011111111114567889998888776543
No 222
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.84 E-value=1.5e-08 Score=99.58 Aligned_cols=111 Identities=21% Similarity=0.272 Sum_probs=68.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch---HHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS---EKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~---~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
.+++|+|+||||||+|+.++|+++ +..++.++..++.....+.. ......++.... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999988 78888998888875433211 111223333322 458999999977531
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc-----ccHHHHhhc
Q 011305 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE-----LDAAMLRRL 368 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~-----Ld~al~rRf 368 (489)
.+....++..+++. -.... ..+|.|||.... +...+.+|+
T Consensus 177 -------s~~~~~~l~~Ii~~---Ry~~~--~~tiitSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 177 -------SRYEKVIINQIVDR---RSSSK--RPTGMLTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred -------CHHHHHHHHHHHHH---HHhCC--CCEEEeCCCCHHHHHHHhChHHHHHH
Confidence 12223333334332 11112 235668887532 455566665
No 223
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.82 E-value=6.3e-09 Score=93.20 Aligned_cols=126 Identities=26% Similarity=0.376 Sum_probs=75.8
Q ss_pred cCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeccchhhhhccchHH
Q 011305 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKWRGDSEK 288 (489)
Q Consensus 212 iG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s~l~~~~~g~~~~ 288 (489)
+|.....+++++.+.... ....+|+|+|++||||+++|++++...+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHh----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 355556666666554432 2346899999999999999999999874 466777776543
Q ss_pred HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-CCc------cc
Q 011305 289 LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWE------LD 361 (489)
Q Consensus 289 ~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~-p~~------Ld 361 (489)
..+++.+ .+++|||+|+|.+... .+..|+..++... ..+ +-+|+++.. +.. ++
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~-~~~-~RlI~ss~~~l~~l~~~~~~~ 121 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQE-RSN-VRLIASSSQDLEELVEEGRFS 121 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH-------------HHHHHHHHHHHCT-TTT-SEEEEEECC-CCCHHHHSTHH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH-------------HHHHHHHHHHhcC-CCC-eEEEEEeCCCHHHHhhccchh
Confidence 2234443 5589999999998654 3445555555332 222 334555543 333 66
Q ss_pred HHHHhhcccccccCCC
Q 011305 362 AAMLRRLEKRILVPLP 377 (489)
Q Consensus 362 ~al~rRf~~~i~~~~P 377 (489)
+.+..|+.. +.+..|
T Consensus 122 ~~L~~~l~~-~~i~lP 136 (138)
T PF14532_consen 122 PDLYYRLSQ-LEIHLP 136 (138)
T ss_dssp HHHHHHCST-CEEEE-
T ss_pred HHHHHHhCC-CEEeCC
Confidence 777778743 344444
No 224
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=3.4e-08 Score=101.13 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=89.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC-------------------------cEEEEeccch---hhhh-ccchHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKT-------------------------TFFNISASSV---VSKW-RGDSEKLI 290 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~-------------------------~~i~v~~s~l---~~~~-~g~~~~~l 290 (489)
..++.+||+||+|+|||++|+.+|+.+.. .++.++...- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34578999999999999999999998732 1344433210 0000 00122345
Q ss_pred HHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHh
Q 011305 291 KVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 366 (489)
Q Consensus 291 ~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~r 366 (489)
+.+.+.+.. ....|++||+++.+... ..+.+++.++... ..+.+|.+|++++.+.+.++|
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~---~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLEEPP---PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHHhCc---CCCEEEEEeCChHhChHHHHH
Confidence 555555432 33469999999988533 4566788887542 235566688889999999999
Q ss_pred hcccccccCCCCHHHHHHHHHH
Q 011305 367 RLEKRILVPLPDTEARRAMFES 388 (489)
Q Consensus 367 Rf~~~i~~~~Pd~~eR~~IL~~ 388 (489)
|+ ..+.|+.|+.++....|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 6689999999888877764
No 225
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.77 E-value=1.1e-08 Score=102.95 Aligned_cols=204 Identities=22% Similarity=0.244 Sum_probs=121.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
.+...|+.+++.....+.+.+..... ..-...+||.|.+||||-++|++..... ..||+.+||..+.
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKL----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHh----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 35567899999887777766544321 1122469999999999999999998866 7899999997765
Q ss_pred hhhc-----cch--HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC--------
Q 011305 280 SKWR-----GDS--EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-------- 344 (489)
Q Consensus 280 ~~~~-----g~~--~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~-------- 344 (489)
.... |.. ..--..+|+.|.. +.+|+|||..+.+. ++..||..+..-+.+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp~-------------lQaKLLRFL~DGtFRRVGee~Ev 331 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSPR-------------LQAKLLRFLNDGTFRRVGEDHEV 331 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcCHH-------------HHHHHHHHhcCCceeecCCcceE
Confidence 4321 111 1223456777665 78999999777544 556677776533211
Q ss_pred CCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhcCCcH
Q 011305 345 DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSG 413 (489)
Q Consensus 345 ~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~G~sg 413 (489)
.-.|-|||||..+- .+-..+.-|. ..+.+..|...+|.. +.+.++.... +++...-..++.
T Consensus 332 ~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s-------~elg~p~pkl~~ 403 (511)
T COG3283 332 HVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFS-------DELGVPRPKLAA 403 (511)
T ss_pred EEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHH-------HHhCCCCCccCH
Confidence 12488999997652 1333444466 446667776666543 2222221110 001111223444
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 414 SDIRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 414 ~Di~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
.-+..+.+..|.+++|++.+.+-....
T Consensus 404 ~~~~~L~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 404 DLLTVLTRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 455556666666666666655544433
No 226
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.76 E-value=4.3e-08 Score=100.38 Aligned_cols=112 Identities=22% Similarity=0.339 Sum_probs=68.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc---hHHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD---SEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~---~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
.+++|+||+|||||+||.++|+++ +..+++++..++....... ........+... ....+|+|||+......
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCCC
Confidence 789999999999999999999987 7889999988876644211 000111112222 23479999999765322
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-Cc----ccHHHHhhcc
Q 011305 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRLE 369 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p-~~----Ld~al~rRf~ 369 (489)
. .....|+..++........ +|.|||.+ .. +++++.+|+.
T Consensus 262 --------~---~~~~~Lf~iin~R~~~~k~--tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 262 --------E---FSKSELFNLINKRLLRQKK--MIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred --------H---HHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHHHHHHH
Confidence 1 1223344444433222222 45578765 22 4567778773
No 227
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.76 E-value=1.3e-07 Score=104.51 Aligned_cols=52 Identities=35% Similarity=0.551 Sum_probs=44.3
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..|+..|++++|++++++.|...+.. .++++|+||||||||++++++++.+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 34667899999999999999876643 24799999999999999999999774
No 228
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.74 E-value=1.5e-07 Score=99.87 Aligned_cols=206 Identities=20% Similarity=0.291 Sum_probs=124.1
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~ 286 (489)
.++|.......+.+.+... ......++++|.+||||+++|+++.... +.||+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~--- 206 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL--- 206 (441)
T ss_pred ceEecCHHHHHHHHHHhhc----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH---
Confidence 4667666666665544331 2334689999999999999999998765 57999999987643211
Q ss_pred HHHHHHHHHH---------------HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc--------
Q 011305 287 EKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------- 343 (489)
Q Consensus 287 ~~~l~~lf~~---------------A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-------- 343 (489)
-..+|.. .....+++|||||++.|... .+..|+..++.-..
T Consensus 207 ---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~ 270 (441)
T PRK10365 207 ---ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQT 270 (441)
T ss_pred ---HHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCCce
Confidence 1111110 11223589999999999654 33455665543210
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHH----h
Q 011305 344 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER----T 408 (489)
Q Consensus 344 ~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~----t 408 (489)
....+.+|++|+.+- .+.+.+..|+ ..+.+..|+..+|.+ ++..++.. ++.. .
T Consensus 271 ~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLreR~~Di~~l~~~~l~~-----------~~~~~~~~~ 338 (441)
T PRK10365 271 ISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLRQRREDIPLLAGHFLQR-----------FAERNRKAV 338 (441)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhcchhHHHHHHHHHHH-----------HHHHhCCCC
Confidence 112355676765542 2444555566 346667777776654 33344322 2221 2
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 011305 409 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 462 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL 462 (489)
.++++..+..|....|.++++.+.+.++..-...+. ..|+.+|+...+
T Consensus 339 ~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~------~~i~~~~l~~~~ 386 (441)
T PRK10365 339 KGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTG------EYISERELPLAI 386 (441)
T ss_pred CCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC------CccchHhCchhh
Confidence 457888888888888888888888777764432221 236666665443
No 229
>PRK06526 transposase; Provisional
Probab=98.72 E-value=1.8e-08 Score=99.70 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc-hHHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~-~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
...+++|+||||||||++|.+++.++ |..++.+++.++....... ....+...+.. -..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIPF 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCCC
Confidence 45789999999999999999999876 6777777777665443211 00111122222 23458999999987643
No 230
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.69 E-value=5e-08 Score=109.87 Aligned_cols=164 Identities=18% Similarity=0.184 Sum_probs=95.3
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhc---------ccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEE
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFT---------GLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFN 272 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~---------~~~~~~~~vLL~GppGtGKT~lAralA~el~-------~~~i~ 272 (489)
-.|.|.+.+|+.+.-.+.-......... .......+|||.|+||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 4789999999998655533221110000 0123345899999999999999999998653 34444
Q ss_pred Eeccchhhhhccc--hHHHH-HHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------
Q 011305 273 ISASSVVSKWRGD--SEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------- 342 (489)
Q Consensus 273 v~~s~l~~~~~g~--~~~~l-~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------- 342 (489)
+.+..... ..+. .+..+ ...+.. ...++++|||+|.+... .+..|+..|+.-.
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEEE---cCCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCC
Confidence 44433211 0000 00000 001111 12379999999998543 3455666664221
Q ss_pred ---cCCCcEEEEEEeCCCC-------------cccHHHHhhccccc-ccCCCCHHHHHHHHHHh
Q 011305 343 ---QSDELVFVLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESL 389 (489)
Q Consensus 343 ---~~~~~viVIatTn~p~-------------~Ld~al~rRf~~~i-~~~~Pd~~eR~~IL~~~ 389 (489)
.-+..+.||||+|... .+++++++||+.+. ....|+.+.=..|-++.
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHH
Confidence 1234578899998642 27899999997654 45666666555554443
No 231
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.66 E-value=2.9e-07 Score=99.56 Aligned_cols=210 Identities=14% Similarity=0.142 Sum_probs=116.8
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec-
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA- 275 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~- 275 (489)
..+.+++.+.+.+||.-...-.++++.++...... ..+.+-+||+||||||||++++.+|++++..+.+-..
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~-------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG-------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 34667788889999999988888888887653321 1233568899999999999999999999988776532
Q ss_pred cchh------hhhccchH------HH---HHHH-HHHHHh-----------cCCcEEEEchhhhHHhhhcccchhhHHHH
Q 011305 276 SSVV------SKWRGDSE------KL---IKVL-FELARH-----------HAPSTIFLDEIDAIISQRGEARSEHEASR 328 (489)
Q Consensus 276 s~l~------~~~~g~~~------~~---l~~l-f~~A~~-----------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~ 328 (489)
..+. ..+.+... .. ...+ +..++. ..+.||+|||+-.+.... . .
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~------~---~ 150 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD------T---S 150 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh------H---H
Confidence 2210 11111100 01 1111 111111 235799999997554321 1 2
Q ss_pred HHHHHHHHHhcCCccCCCcEEEEEE-eC------CCC--------cccHHHHhhc-ccccccCCCCHHHHHHHHHHhcCC
Q 011305 329 RLKTELLIQMDGLTQSDELVFVLAA-TN------LPW--------ELDAAMLRRL-EKRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 329 ~i~~~LL~~ldg~~~~~~~viVIat-Tn------~p~--------~Ld~al~rRf-~~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
.+.+.|...+.. ....++++|.+ +. ... .+++.++... -..|.|-+-...--..-|...+..
T Consensus 151 ~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 151 RFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKK 228 (519)
T ss_pred HHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 333444444431 12214555555 11 111 3566666622 255677665555555555555433
Q ss_pred C-----C--CCCC-CC-HHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 393 Q-----T--GEES-LP-YDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 393 ~-----~--~~~~-~d-l~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
. + ...+ .+ ++.|+..+. +||+.++......+.
T Consensus 229 E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 229 EARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 3 1 1111 22 566666544 599888776665554
No 232
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.9e-07 Score=105.14 Aligned_cols=129 Identities=23% Similarity=0.294 Sum_probs=92.7
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh------
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV------ 279 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~------ 279 (489)
+.|+|++++...+.+++...... ..+. .+...+||.||.|+|||-+|+++|..+ .-.++.++++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g---l~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG---LKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc---cCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 35899999999999988663321 1111 356789999999999999999999988 5678999998633
Q ss_pred ---hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc--------CCCcE
Q 011305 280 ---SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELV 348 (489)
Q Consensus 280 ---~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--------~~~~v 348 (489)
..|+|..+ ...+.+..+....+||+|||||.-.+. +++.|++.+|.-.- .-.++
T Consensus 638 gsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkAh~~-------------v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 638 GSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKAHPD-------------VLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred CCCcccccchh--HHHHHHHHhcCCceEEEEechhhcCHH-------------HHHHHHHHHhcCccccCCCcEeeccce
Confidence 22444433 345666777777899999999876433 66777777764321 22468
Q ss_pred EEEEEeCC
Q 011305 349 FVLAATNL 356 (489)
Q Consensus 349 iVIatTn~ 356 (489)
+||+|+|.
T Consensus 703 I~IMTsn~ 710 (898)
T KOG1051|consen 703 IFIMTSNV 710 (898)
T ss_pred EEEEeccc
Confidence 89999875
No 233
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.64 E-value=9.8e-08 Score=91.39 Aligned_cols=178 Identities=21% Similarity=0.286 Sum_probs=93.5
Q ss_pred cCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEec-cchh----hhh-
Q 011305 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISA-SSVV----SKW- 282 (489)
Q Consensus 212 iG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---~i~v~~-s~l~----~~~- 282 (489)
+|.+...+.|.+.+.. .+...++|+||.|+|||++++.+.+.+... .+++.. .... ...
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 5666777777665533 234789999999999999999999988321 112211 0000 000
Q ss_pred -----------------------------ccchHHHHHHHHHHHHhc-CCcEEEEchhhhHH-hhhcccchhhHHHHHHH
Q 011305 283 -----------------------------RGDSEKLIKVLFELARHH-APSTIFLDEIDAII-SQRGEARSEHEASRRLK 331 (489)
Q Consensus 283 -----------------------------~g~~~~~l~~lf~~A~~~-~p~VL~IDEiD~l~-~~r~~~~~~~~~~~~i~ 331 (489)
.......+..++...... ...||+|||++.+. .... ...+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--------~~~~~ 141 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--------DKDFL 141 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--------THHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--------hHHHH
Confidence 011233445555555443 23799999999997 2111 12344
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcc------cHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC---CCCCHH
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWEL------DAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE---ESLPYD 402 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~L------d~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~---~~~dl~ 402 (489)
..|...++.........+|++++.. ... ...+..|+.. +.+++.+.++..++++..+... .. .+.+++
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~-~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~ 218 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSD-SLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIE 218 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSH-HHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHHH
T ss_pred HHHHHHHhhccccCCceEEEECCch-HHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHH
Confidence 5566666543334444445544442 111 1234457766 9999999999999999987665 22 344567
Q ss_pred HHHHHhcCCc
Q 011305 403 LLVERTEGYS 412 (489)
Q Consensus 403 ~La~~t~G~s 412 (489)
.+...+.|..
T Consensus 219 ~i~~~~gG~P 228 (234)
T PF01637_consen 219 EIYSLTGGNP 228 (234)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHhCCCH
Confidence 7777777654
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.64 E-value=1.8e-08 Score=94.51 Aligned_cols=72 Identities=28% Similarity=0.464 Sum_probs=48.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch-HHHHHHHHHHHHhcCCcEEEEchhhhH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~-~~~l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
....+++|+||||||||++|.++++++ |.++..++.+++........ .......+.... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 345799999999999999999999977 88899999988876543210 011222333333 3479999999643
No 235
>PF13173 AAA_14: AAA domain
Probab=98.63 E-value=1e-07 Score=84.18 Aligned_cols=69 Identities=29% Similarity=0.385 Sum_probs=48.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
+.++|+||+|+|||++++.+++.+. ..++++++.+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 5689999999999999999999886 88889988766432111111 222222222225689999999887
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=98.57 E-value=1.3e-07 Score=93.82 Aligned_cols=74 Identities=26% Similarity=0.334 Sum_probs=50.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc-hHHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~-~~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
..+.+++|+||||||||+++.+++..+ |..+..+++.++....... ....+..++... ...+.+|+|||++...
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 345789999999999999999998764 7788888877776443211 111233344332 2356899999997654
No 237
>PRK06921 hypothetical protein; Provisional
Probab=98.57 E-value=2.1e-07 Score=92.74 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=46.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~ 312 (489)
..+++|+||||+|||+|+.++|+++ +..+++++..++........ ......+.. -....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 4689999999999999999999986 56778888766654432111 111122222 23457999999943
No 238
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.55 E-value=4.3e-07 Score=99.59 Aligned_cols=123 Identities=13% Similarity=0.064 Sum_probs=85.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhhhhccch--HHHH--------HHHHHHHHhcCCcEEEEchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDS--EKLI--------KVLFELARHHAPSTIFLDEI 310 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~~~~g~~--~~~l--------~~lf~~A~~~~p~VL~IDEi 310 (489)
.||+|.|++|||||+++++++.-+. .||..+..+--....+|.. +..+ ..++..|.. +||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 6899999999999999999999884 5888776654444444432 1111 112223322 79999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCC---CcccHHHHhhcccccccCCC
Q 011305 311 DAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLP 377 (489)
Q Consensus 311 D~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~~~~viVIatTn~p---~~Ld~al~rRf~~~i~~~~P 377 (489)
..+.+ .+++.|++.|+.-. ..+..+++|++-|.. ..|++++++||+..+.++.|
T Consensus 103 n~~~~-------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 103 ERLEP-------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred ccCCH-------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 87743 47788888886321 123456677763321 34899999999999999988
Q ss_pred CHHH
Q 011305 378 DTEA 381 (489)
Q Consensus 378 d~~e 381 (489)
+..+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7654
No 239
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.54 E-value=2.3e-07 Score=94.25 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchH-HHHHHHHHHHHhcCCcEEEEchhhhH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~-~~l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
..+|++|+||+|||||+|+.++|+++ |.++..++.+++......... ......+... ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 35799999999999999999999998 788888888877654332110 1122333332 23479999999653
No 240
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.54 E-value=5.1e-07 Score=89.37 Aligned_cols=72 Identities=26% Similarity=0.419 Sum_probs=51.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchHH-HH-HHHHHHHHhcCCcEEEEchhhhHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEK-LI-KVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~~-~l-~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
.+.+++|+||||||||+||-|+++++ |.+++.++.++++......... .. ..+.... ....+|+|||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCcc
Confidence 45799999999999999999999988 7889999999887654322111 11 1112212 234799999996653
No 241
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.53 E-value=4.9e-06 Score=82.39 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=63.2
Q ss_pred CCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 357 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 357 p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
|..++-.+++|. .+|...+++.++...||+..+......-+.+ ++.|......-+-+.--.|+..|...+.+|..
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~--- 414 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG--- 414 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC---
Confidence 456888999998 6688888899999999999987776654443 34444444444444445566666666655521
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
..+..+|++.+..-+-..
T Consensus 415 ---------------~~v~~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 415 ---------------KVVEVDDIERVYRLFLDE 432 (454)
T ss_pred ---------------ceeehhHHHHHHHHHhhh
Confidence 237889999988766544
No 242
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=4.4e-06 Score=84.01 Aligned_cols=170 Identities=12% Similarity=0.054 Sum_probs=99.9
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE--------EEec--------cc
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF--------NISA--------SS 277 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i--------~v~~--------s~ 277 (489)
+..+++.++..+.. ...++.+||+|| +||+++|+.+|+.+-..-- .-+| ++
T Consensus 7 q~~~~~~L~~~~~~-----------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILEQ-----------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 34555666655533 234578999996 6899999999997722100 0000 11
Q ss_pred hhhhhc-c--chHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 278 VVSKWR-G--DSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 278 l~~~~~-g--~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
+.--.. | -.-..++.+...+. .....|++||++|.+... ..|.||+.++ .++..+++
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLE---EPp~~t~~ 137 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIE---EPQSEIYI 137 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhc---CCCCCeEE
Confidence 100000 1 11234444444333 223469999999998533 4678999987 34455777
Q ss_pred EEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 011305 351 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 351 IatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~ 421 (489)
|.+|++++.+-|.++||+ ..+.|+. +.++..+++.. .+.. .+...++....| +++....+.+
T Consensus 138 iL~t~~~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L~~----~g~~--~~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 138 FLLTNDENKVLPTIKSRT-QIFHFPK-NEAYLIQLLEQ----KGLL--KTQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred EEEECChhhCchHHHHcc-eeeeCCC-cHHHHHHHHHH----cCCC--hHHHHHHHHHCC-CHHHHHHHhC
Confidence 888888999999999999 5577866 55555555542 2222 222334444555 5555555553
No 243
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=1.3e-06 Score=87.61 Aligned_cols=118 Identities=13% Similarity=0.139 Sum_probs=78.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------EEEEeccchhhhhccchHHHHHHHHHHHH----h
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT----------------FFNISASSVVSKWRGDSEKLIKVLFELAR----H 299 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~----------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~ 299 (489)
.-++.+||+||+|+||+.+|.++|+.+-+. ++.+.... .+.. -.-..++.+..... .
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccC
Confidence 345789999999999999999999987431 22221110 0000 01223444443332 2
Q ss_pred cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCC
Q 011305 300 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 377 (489)
Q Consensus 300 ~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~P 377 (489)
....|++||++|.+... ..+.||+.++ .++..+++|..|+.++.+.+.++||+ ..+.|+.+
T Consensus 94 ~~~kv~ii~~ad~mt~~-------------AaNaLLK~LE---EPp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD-------------AISAFLKVLE---DPPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHH-------------HHHHHHHHhh---cCCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 33469999999998543 5678999987 34556778888899999999999999 44666654
No 244
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.47 E-value=1.5e-06 Score=76.24 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=48.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEeccchhhh--------------hc--cchHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISASSVVSK--------------WR--GDSEKLIKVLFELA 297 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el--------~~~~i~v~~s~l~~~--------------~~--g~~~~~l~~lf~~A 297 (489)
.+.++++||||+|||++++.+++.+ ..+++.+++...... .. .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3679999999999999999999988 778888877543310 00 12333444455555
Q ss_pred HhcCCcEEEEchhhhHH
Q 011305 298 RHHAPSTIFLDEIDAII 314 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~l~ 314 (489)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55554599999999975
No 245
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=2.3e-06 Score=84.25 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=78.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------------EEEEeccchhhhhccchHHHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT----------------------FFNISASSVVSKWRGDSEKLIKVLFELA 297 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~----------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A 297 (489)
.+++.+||+||+|+||..+|.++|+.+-+. ++.+.... .. -....++.+.+..
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~----I~id~ir~l~~~l 79 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NP----IKKEDALSIINKL 79 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-cc----CCHHHHHHHHHHH
Confidence 467889999999999999999999977211 11111110 00 1122233333322
Q ss_pred H----h-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccc
Q 011305 298 R----H-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 372 (489)
Q Consensus 298 ~----~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i 372 (489)
. . ....|++|+++|.+... ..+.||+.++ .++..+++|..|+.++.+.+.++||+.. +
T Consensus 80 ~~~s~e~~~~KV~II~~ae~m~~~-------------AaNaLLK~LE---EPp~~t~fiLit~~~~~lLpTI~SRCq~-~ 142 (261)
T PRK05818 80 NRPSVESNGKKIYIIYGIEKLNKQ-------------SANSLLKLIE---EPPKNTYGIFTTRNENNILNTILSRCVQ-Y 142 (261)
T ss_pred ccCchhcCCCEEEEeccHhhhCHH-------------HHHHHHHhhc---CCCCCeEEEEEECChHhCchHhhhheee-e
Confidence 1 1 23579999999998533 5688999987 3555677888999999999999999944 6
Q ss_pred ccCCC
Q 011305 373 LVPLP 377 (489)
Q Consensus 373 ~~~~P 377 (489)
.++.+
T Consensus 143 ~~~~~ 147 (261)
T PRK05818 143 VVLSK 147 (261)
T ss_pred ecCCh
Confidence 66665
No 246
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1.2e-05 Score=81.33 Aligned_cols=125 Identities=13% Similarity=0.043 Sum_probs=85.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-----------c--EEEEeccchhhhhccchHHHHHHHHHHHHh-----cCCc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKT-----------T--FFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPS 303 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~-----------~--~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~-----~~p~ 303 (489)
.+.+||+|+.|.||+.+|+.+++.+-+ | +..++.. +.. -.-..++.+.+.... ....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCce
Confidence 367889999999999999999998722 1 2222200 010 111234444433321 2457
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHH
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARR 383 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~ 383 (489)
|++||++|.+.. ...+.|+..++. .++.+++|..|+.++.+-+.++||+ ..+.|+.|+.++..
T Consensus 93 vvII~~~e~m~~-------------~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTSN-------------SLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccCH-------------HHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 999999987742 245789998873 4445667777778899999999999 66999999988887
Q ss_pred HHHHH
Q 011305 384 AMFES 388 (489)
Q Consensus 384 ~IL~~ 388 (489)
..+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 76664
No 247
>PF05729 NACHT: NACHT domain
Probab=98.36 E-value=4.8e-06 Score=75.43 Aligned_cols=140 Identities=20% Similarity=0.251 Sum_probs=74.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC--------Cc-EEEEeccchhhhh------------ccchHHHHHH-HHHHHHhcC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK--------TT-FFNISASSVVSKW------------RGDSEKLIKV-LFELARHHA 301 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~--------~~-~i~v~~s~l~~~~------------~g~~~~~l~~-lf~~A~~~~ 301 (489)
-++|+|+||+|||++++.++..+. .+ .+.+.+.+..... .......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998771 11 2333333322110 0011111111 112233445
Q ss_pred CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcc--cccccCCCCH
Q 011305 302 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE--KRILVPLPDT 379 (489)
Q Consensus 302 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~--~~i~~~~Pd~ 379 (489)
..+|+||.+|.+...... .. .......+...+......+ +-++.|+. +..... +.+.+. ..+.++..+.
T Consensus 82 ~~llilDglDE~~~~~~~--~~---~~~~~~~l~~l~~~~~~~~--~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS--QE---RQRLLDLLSQLLPQALPPG--VKLIITSR-PRAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh--hH---HHHHHHHHHHHhhhccCCC--CeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCH
Confidence 579999999999764321 00 1112222323333211122 33333443 333322 444443 3478888899
Q ss_pred HHHHHHHHHhcCC
Q 011305 380 EARRAMFESLLPS 392 (489)
Q Consensus 380 ~eR~~IL~~~l~~ 392 (489)
++..++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
No 248
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.33 E-value=1.8e-06 Score=86.42 Aligned_cols=136 Identities=24% Similarity=0.370 Sum_probs=76.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEeccchhhhhccchHHHHHHHHHHHH-----------hcCCcEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKWRGDSEKLIKVLFELAR-----------HHAPSTIF 306 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~---~i~v~~s~l~~~~~g~~~~~l~~lf~~A~-----------~~~p~VL~ 306 (489)
..+++||.||+|||||++++..-+.+... ...++++.. .+...++.+.+... ..+..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 35789999999999999999988776432 223444322 12223333222110 11235999
Q ss_pred EchhhhHHhhhcccchhhHHHHHHHHHHHHH-hc--CCccC-------CCcEEEEEEeCCCC---cccHHHHhhcccccc
Q 011305 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQ-MD--GLTQS-------DELVFVLAATNLPW---ELDAAMLRRLEKRIL 373 (489)
Q Consensus 307 IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~-ld--g~~~~-------~~~viVIatTn~p~---~Ld~al~rRf~~~i~ 373 (489)
|||++.-.++.-.. .... +||.+ ++ |.-.. -..+.++++++.+. .+++++.|.| ..+.
T Consensus 106 iDDlN~p~~d~ygt-------q~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~ 176 (272)
T PF12775_consen 106 IDDLNMPQPDKYGT-------QPPI-ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILN 176 (272)
T ss_dssp EETTT-S---TTS---------HHH-HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE
T ss_pred ecccCCCCCCCCCC-------cCHH-HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEE
Confidence 99998766553221 1122 33333 22 21111 12477888887543 3888999988 6799
Q ss_pred cCCCCHHHHHHHHHHhcC
Q 011305 374 VPLPDTEARRAMFESLLP 391 (489)
Q Consensus 374 ~~~Pd~~eR~~IL~~~l~ 391 (489)
++.|+.++...|+..++.
T Consensus 177 ~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ----TCCHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHh
Confidence 999999998888777664
No 249
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.33 E-value=5.1e-06 Score=81.07 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=74.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~ 322 (489)
.+-.++||+|||||.+++.+|+.+|.+++.++|++..+ ...+..++.-+.... +.+++||++.+..+.-+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl~~~vLS--- 102 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRLSEEVLS--- 102 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSSHHHHH---
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhhhHHHHH---
Confidence 56788999999999999999999999999999987543 345666665555543 89999999988543110
Q ss_pred hhHHHHHHHHHHHHHhcCCcc----------CCCcEEEEEEeCCC----CcccHHHHhhcccccccCCCCHHHHHHHH
Q 011305 323 EHEASRRLKTELLIQMDGLTQ----------SDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMF 386 (489)
Q Consensus 323 ~~~~~~~i~~~LL~~ldg~~~----------~~~~viVIatTn~p----~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL 386 (489)
... +.+..+...+..-.. -+...-++.|.|.. ..+++.++.-| +.+.+..||.....+++
T Consensus 103 --~i~-~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 103 --VIS-QQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp --HHH-HHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred --HHH-HHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 000 111122222211110 11223455566633 45888888877 77899999976655543
No 250
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.33 E-value=1.3e-05 Score=85.24 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=49.2
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.+.+++.+.+.++|.=...-..++++++..... +. .....+-+||+||+||||||.++.+++++|..+++-+
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~----~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAE----FT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHH----hc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 345556667777876666655666665541110 01 1123356899999999999999999999999888765
No 251
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.32 E-value=8.3e-06 Score=88.32 Aligned_cols=164 Identities=25% Similarity=0.256 Sum_probs=85.8
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec--cchhh--hhc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVVS--KWR 283 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~--s~l~~--~~~ 283 (489)
+|.|++++|+.|.-.+.--. ..-+... ....-+|||+|.||||||.+.+.+++-+-.-.+. ++ +.-++ .|+
T Consensus 430 sIye~edvKkglLLqLfGGt--~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSavGLTayV 506 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGT--RKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAVGLTAYV 506 (804)
T ss_pred hhhcccchhhhHHHHHhcCC--cccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchhcceeeE
Confidence 68889999998874432211 1111111 2333689999999999999999999977433221 11 11000 000
Q ss_pred ---cchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH------hcCC-ccCCCcEEEEEE
Q 011305 284 ---GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ------MDGL-TQSDELVFVLAA 353 (489)
Q Consensus 284 ---g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~------ldg~-~~~~~~viVIat 353 (489)
+++...+-+--.. -....+|.+|||+|.+..... .++.+.+++ --|+ ..-+...-|+|+
T Consensus 507 trd~dtkqlVLesGAL-VLSD~GiCCIDEFDKM~dStr----------SvLhEvMEQQTvSIAKAGII~sLNAR~SVLAa 575 (804)
T KOG0478|consen 507 TKDPDTRQLVLESGAL-VLSDNGICCIDEFDKMSDSTR----------SVLHEVMEQQTLSIAKAGIIASLNARCSVLAA 575 (804)
T ss_pred EecCccceeeeecCcE-EEcCCceEEchhhhhhhHHHH----------HHHHHHHHHhhhhHhhcceeeeccccceeeee
Confidence 0011100000000 012247999999999943321 122211111 1122 223445668888
Q ss_pred eCCCC-------------cccHHHHhhcccccc-cCCCCHHHHHHHHH
Q 011305 354 TNLPW-------------ELDAAMLRRLEKRIL-VPLPDTEARRAMFE 387 (489)
Q Consensus 354 Tn~p~-------------~Ld~al~rRf~~~i~-~~~Pd~~eR~~IL~ 387 (489)
+|... .|++.|+|||+.++- +..||+..-+.|-.
T Consensus 576 ANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~ 623 (804)
T KOG0478|consen 576 ANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLAD 623 (804)
T ss_pred eccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHH
Confidence 88432 278999999986553 45566553333333
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.27 E-value=1.1e-05 Score=72.63 Aligned_cols=72 Identities=25% Similarity=0.410 Sum_probs=49.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh----------------------c--cchHHHHHHHHHHH
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----------------------R--GDSEKLIKVLFELA 297 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~----------------------~--g~~~~~l~~lf~~A 297 (489)
++|+||||+|||+++..++... +.+++.++........ . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 5677777664332210 0 01111122334555
Q ss_pred HhcCCcEEEEchhhhHHhh
Q 011305 298 RHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~l~~~ 316 (489)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6677899999999998754
No 253
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.25 E-value=7e-06 Score=82.63 Aligned_cols=163 Identities=21% Similarity=0.294 Sum_probs=103.4
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHH---HhCCcEEEEeccchh-----
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT---ECKTTFFNISASSVV----- 279 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~---el~~~~i~v~~s~l~----- 279 (489)
-..+.|..+..+.+.+++.....+. ....|++.||.|+|||++.-..-. +.|-+++.|......
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~g--------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHG--------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhc--------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 3467888888888888776644322 347899999999999998765533 557777766543221
Q ss_pred ----------------hhhccchHHHHHHHHHHHHh----cCCcEEE-EchhhhHHhhhcccchhhHHHHHHHHHHHHHh
Q 011305 280 ----------------SKWRGDSEKLIKVLFELARH----HAPSTIF-LDEIDAIISQRGEARSEHEASRRLKTELLIQM 338 (489)
Q Consensus 280 ----------------~~~~g~~~~~l~~lf~~A~~----~~p~VL~-IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~l 338 (489)
.+..|.....+..+....+. .+..|+| +||+|..++.. + +.-+++.+
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----------r--QtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----------R--QTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----------h--hHHHHHHH
Confidence 11123333333333333222 1222555 57999987652 1 12355566
Q ss_pred cCCccCCCcEEEEEEeCCCCc---ccHHHHhhcccc-cccCCC-CHHHHHHHHHHhc
Q 011305 339 DGLTQSDELVFVLAATNLPWE---LDAAMLRRLEKR-ILVPLP-DTEARRAMFESLL 390 (489)
Q Consensus 339 dg~~~~~~~viVIatTn~p~~---Ld~al~rRf~~~-i~~~~P-d~~eR~~IL~~~l 390 (489)
|-......++.||+.|.+.+. |.+.+.+||.+. |+++.+ +..+-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 644555667888988877754 678999999766 555543 7788888888877
No 254
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.21 E-value=1.1e-05 Score=86.83 Aligned_cols=164 Identities=20% Similarity=0.193 Sum_probs=96.6
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe-c-----------
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS-A----------- 275 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~-~----------- 275 (489)
+..|.|.+.+|.-+.-.+.--......-.-.++..-+|++.|.||||||.+.++++.-+-..+|.-. +
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVv 423 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVV 423 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEE
Confidence 6689999999999875543322211111111344468999999999999999999987754433211 1
Q ss_pred -cchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cC
Q 011305 276 -SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QS 344 (489)
Q Consensus 276 -s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~ 344 (489)
.+-.+.|.-+.. .+-.| ..+|.+|||+|.+..+. ..++...|+.-. .-
T Consensus 424 kD~esgdf~iEAG-----ALmLA---DnGICCIDEFDKMd~~d-------------qvAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 424 KDEESGDFTIEAG-----ALMLA---DNGICCIDEFDKMDVKD-------------QVAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred ecCCCCceeeecC-----cEEEc---cCceEEechhcccChHh-------------HHHHHHHHHhheehheecceEEee
Confidence 111111110000 01111 23799999999985431 123444443111 11
Q ss_pred CCcEEEEEEeCCCC-------------cccHHHHhhccc-ccccCCCCHHHHHHHHHHhcCC
Q 011305 345 DELVFVLAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 345 ~~~viVIatTn~p~-------------~Ld~al~rRf~~-~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
+.+.-|||++|... .++++++|||+. .|.+..|++..-..|-++.+..
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 23455788887652 278999999985 4566778887777776666543
No 255
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.17 E-value=2.5e-05 Score=77.92 Aligned_cols=156 Identities=19% Similarity=0.112 Sum_probs=81.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH--hCCc---EEEEeccchh----------hh---h------ccchHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATE--CKTT---FFNISASSVV----------SK---W------RGDSEKLIKVLFEL 296 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~e--l~~~---~i~v~~s~l~----------~~---~------~g~~~~~l~~lf~~ 296 (489)
..+.|.|+|++|+|||++|+.+++. .... .+.++.+.-. .. . ....+.....+. .
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~ 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLR-E 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHH-H
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccch-h
Confidence 4467899999999999999999987 4322 2333332110 00 0 011223333333 3
Q ss_pred HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCC
Q 011305 297 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 297 A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~ 376 (489)
.....+++|+||+++... ....+...+. ....+.-||.||...... ...... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~~---------------~~~~l~~~~~---~~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE---------------DLEELREPLP---SFSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH---------------HH-------H---CHHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc---------------cccccccccc---cccccccccccccccccc-cccccc-cccccccc
Confidence 334457999999997542 1111222221 111123456677654322 122111 46788889
Q ss_pred CCHHHHHHHHHHhcCCCC----CCCCCCHHHHHHHhcCCcHHHHHH
Q 011305 377 PDTEARRAMFESLLPSQT----GEESLPYDLLVERTEGYSGSDIRL 418 (489)
Q Consensus 377 Pd~~eR~~IL~~~l~~~~----~~~~~dl~~La~~t~G~sg~Di~~ 418 (489)
.+.++-.+++........ .........+++.+.|. |-.|..
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~ 201 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKL 201 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 999999999999876554 11222356788887764 334433
No 256
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.14 E-value=7.3e-06 Score=90.50 Aligned_cols=164 Identities=24% Similarity=0.272 Sum_probs=91.4
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcc--cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE-eccchhhhhcc
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI-SASSVVSKWRG 284 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v-~~s~l~~~~~g 284 (489)
.-.|.|++.+|+.+.-.+.-.. +..... .....-||||.|.||||||.|.+.+++.+-..++.- .++.- +|
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv--~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGV--KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AG 358 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCC--cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cC
Confidence 4579999999999875443322 111111 123346899999999999999999999874443321 11111 01
Q ss_pred chHHHHHH-----HHHHHH---hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC----c------cCCC
Q 011305 285 DSEKLIKV-----LFELAR---HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----T------QSDE 346 (489)
Q Consensus 285 ~~~~~l~~-----lf~~A~---~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~----~------~~~~ 346 (489)
-++..++. +.-.+- -..++|.+|||+|.+... -...+...|+.- . .-+.
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~-------------dr~aihEaMEQQtIsIaKAGI~atLnA 425 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE-------------DRVAIHEAMEQQTISIAKAGITATLNA 425 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH-------------HHHHHHHHHHhcEeeecccceeeecch
Confidence 11100000 000110 123589999999987432 123344444311 1 1123
Q ss_pred cEEEEEEeCCCC-------------cccHHHHhhcccccccCC-CCHHHHHHHHHHhc
Q 011305 347 LVFVLAATNLPW-------------ELDAAMLRRLEKRILVPL-PDTEARRAMFESLL 390 (489)
Q Consensus 347 ~viVIatTn~p~-------------~Ld~al~rRf~~~i~~~~-Pd~~eR~~IL~~~l 390 (489)
..-|+||+|... .++++++|||+..+.+.. |+.+.-..+.++.+
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHH
Confidence 455777887664 278899999998766544 65554444444443
No 257
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.13 E-value=1.8e-05 Score=83.11 Aligned_cols=204 Identities=21% Similarity=0.228 Sum_probs=110.8
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccch
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~ 286 (489)
-+|.|.+++|+.|.-+++-..... ...+ ....-+|+|.|.||+.||.|.+.+.+-.-...|..... +..+|-+
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~--~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLT 416 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKS--PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLT 416 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCC--CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccc
Confidence 379999999999987665532111 1011 23335799999999999999999998775555443221 1123333
Q ss_pred HHHHHHH-----------HHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-ccCCCcEEEEEEe
Q 011305 287 EKLIKVL-----------FELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAAT 354 (489)
Q Consensus 287 ~~~l~~l-----------f~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~-~~~~~~viVIatT 354 (489)
+..++.- +-.| ..+|.+|||+|.+..... ..-|++.++..-.+ .=-|+ +.-+.+..|++++
T Consensus 417 AAVmkDpvTgEM~LEGGALVLA---D~GICCIDEfDKM~e~DR--tAIHEVMEQQTISI--aKAGI~TtLNAR~sILaAA 489 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLA---DGGICCIDEFDKMDESDR--TAIHEVMEQQTISI--AKAGINTTLNARTSILAAA 489 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEc---cCceEeehhhhhhhhhhh--HHHHHHHHhhhhhh--hhhccccchhhhHHhhhhc
Confidence 3322210 0111 237999999999965411 11122211100000 00122 1223446678888
Q ss_pred CCCC-------------cccHHHHhhccccccc-CCCCHHHHHHHHHHhcC--CCCCCC-----CCCHHH------HHHH
Q 011305 355 NLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLP--SQTGEE-----SLPYDL------LVER 407 (489)
Q Consensus 355 n~p~-------------~Ld~al~rRf~~~i~~-~~Pd~~eR~~IL~~~l~--~~~~~~-----~~dl~~------La~~ 407 (489)
|..+ .|+.||+|||+..+.+ ..||.+.-..+-++..- .+..++ .++.+. +++.
T Consensus 490 NPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~ 569 (721)
T KOG0482|consen 490 NPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKR 569 (721)
T ss_pred CccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhh
Confidence 7653 2889999999876655 45766665555555431 111111 133222 4455
Q ss_pred hcCCcHHHHHHHHHHHH
Q 011305 408 TEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 408 t~G~sg~Di~~l~~~A~ 424 (489)
..-..+.++..-+..|.
T Consensus 570 ~~P~vp~~l~dyi~~AY 586 (721)
T KOG0482|consen 570 KNPVVPEALADYITGAY 586 (721)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 55566666665554444
No 258
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.12 E-value=7.8e-06 Score=84.92 Aligned_cols=103 Identities=19% Similarity=0.232 Sum_probs=58.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC-cEEEEeccchhhhhccch------HHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASSVVSKWRGDS------EKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~-~~i~v~~s~l~~~~~g~~------~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
..+++|++||||+|+|||+|+-.+.+.+.. .--.+.-.+++....... ..-+..+.+... ....+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 356799999999999999999999998743 222222222222111000 011122222222 222599999996
Q ss_pred hHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 312 AIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 312 ~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.-- -....++..|+..+- ..++++|+|+|.+
T Consensus 138 V~D----------iaDAmil~rLf~~l~-----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VTD----------IADAMILKRLFEALF-----KRGVVLVATSNRP 168 (362)
T ss_pred ccc----------hhHHHHHHHHHHHHH-----HCCCEEEecCCCC
Confidence 531 112345555655542 2347889999987
No 259
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.07 E-value=1.4e-05 Score=85.66 Aligned_cols=170 Identities=23% Similarity=0.295 Sum_probs=93.4
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc------------
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------------ 277 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~------------ 277 (489)
.|.|++.+|..+.-.+.--..+..--...+...-+|||+|.||||||.+.|.+++-....++...-..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 68999999999886554322211111111334467999999999999999999998766555432111
Q ss_pred -hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHH-----HHHHHHHhcCCccCCCcEEEE
Q 011305 278 -VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-----KTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 278 -l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i-----~~~LL~~ldg~~~~~~~viVI 351 (489)
+...|.-+.. .+-.| ..+|.+|||+|.+..... .+-|++..+. ...+...+. ....||
T Consensus 530 PvtrEWTLEaG-----ALVLA---DkGvClIDEFDKMndqDR--tSIHEAMEQQSISISKAGIVtsLq------ArctvI 593 (854)
T KOG0477|consen 530 PVTREWTLEAG-----ALVLA---DKGVCLIDEFDKMNDQDR--TSIHEAMEQQSISISKAGIVTSLQ------ARCTVI 593 (854)
T ss_pred CccceeeeccC-----eEEEc---cCceEEeehhhhhccccc--chHHHHHHhcchhhhhhhHHHHHH------hhhhhh
Confidence 0111110000 01112 237999999999865421 1222222210 112333332 224578
Q ss_pred EEeCCC---C----------cccHHHHhhcccccccCC---CCHHH--HHHHHHHhcCCCCC
Q 011305 352 AATNLP---W----------ELDAAMLRRLEKRILVPL---PDTEA--RRAMFESLLPSQTG 395 (489)
Q Consensus 352 atTn~p---~----------~Ld~al~rRf~~~i~~~~---Pd~~e--R~~IL~~~l~~~~~ 395 (489)
+|+|.. . .|...+++||+....+.. |-.++ ..-++..+.+.++.
T Consensus 594 AAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~ 655 (854)
T KOG0477|consen 594 AAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPS 655 (854)
T ss_pred eecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCc
Confidence 888762 1 366789999987665544 33333 33455556554443
No 260
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.06 E-value=6.1e-07 Score=92.27 Aligned_cols=162 Identities=27% Similarity=0.303 Sum_probs=82.1
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc-----h-----
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS-----V----- 278 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~-----l----- 278 (489)
..|.|.+.+|..+.-.+.........-....+..-|+||.|.||||||.+.+.+++-....+ ++++.. +
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 36889888888776333222211100000123346899999999999999998876554333 333221 1
Q ss_pred ----hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cC
Q 011305 279 ----VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QS 344 (489)
Q Consensus 279 ----~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~ 344 (489)
.+.|.-+. ..+-.| ..+|++|||+|.+... ....|+..|+.-. .-
T Consensus 103 ~d~~~~~~~lea-----Galvla---d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l 161 (331)
T PF00493_consen 103 RDPVTGEWVLEA-----GALVLA---DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTL 161 (331)
T ss_dssp CCGGTSSECEEE------HHHHC---TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEE
T ss_pred cccccceeEEeC-----Cchhcc---cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccc
Confidence 11111111 112222 2389999999998542 2345666665321 11
Q ss_pred CCcEEEEEEeCCCC-------------cccHHHHhhccccccc-CCCCHHHHHHHHHHhcCC
Q 011305 345 DELVFVLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPS 392 (489)
Q Consensus 345 ~~~viVIatTn~p~-------------~Ld~al~rRf~~~i~~-~~Pd~~eR~~IL~~~l~~ 392 (489)
+...-|++++|... .+++.+++||+..+.+ ..|+.+.-..+.++.+..
T Consensus 162 ~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 162 NARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp E---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred cchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 23466888888654 2778999999988765 446655555565655543
No 261
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.06 E-value=6.8e-05 Score=74.60 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=64.2
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEE-----ec--cc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI-----SA--SS 277 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v-----~~--s~ 277 (489)
.|.|+.-+++.+...+..++.++. -..|-.+=|||++||||..+++.||+.+ ..+++.. +. ..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 588999999999888888776553 1233455689999999999999999977 2232211 11 11
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
-...|..+.. ..+...++..+.++.++||+|.|.+.
T Consensus 158 ~ie~Yk~eL~---~~v~~~v~~C~rslFIFDE~DKmp~g 193 (344)
T KOG2170|consen 158 KIEDYKEELK---NRVRGTVQACQRSLFIFDEVDKLPPG 193 (344)
T ss_pred HHHHHHHHHH---HHHHHHHHhcCCceEEechhhhcCHh
Confidence 1122322222 23334445566689999999999654
No 262
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.06 E-value=6.8e-05 Score=89.25 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=96.6
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---EEEeccch--
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF---FNISASSV-- 278 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~---i~v~~s~l-- 278 (489)
+...+++++|.+...+++.+.+... ....+-+-|+|++|+||||+|+++++.+..+| +.++...+
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 4456889999999999998876431 12346788999999999999999998874432 11211000
Q ss_pred -hhhhc-------cc----hHHHHHH-------------HHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHH
Q 011305 279 -VSKWR-------GD----SEKLIKV-------------LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (489)
Q Consensus 279 -~~~~~-------g~----~~~~l~~-------------lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 333 (489)
...+. .. ....+.. ........++.+|+|||++.. .....
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~---------------~~l~~ 313 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ---------------DVLDA 313 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH---------------HHHHH
Confidence 00000 00 0000111 111122345578999998642 12223
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCH----HHHHHHhc
Q 011305 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY----DLLVERTE 409 (489)
Q Consensus 334 LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl----~~La~~t~ 409 (489)
+....+.. ..+ ..||.||.+...+.. ...+..+.++.|+.++..+++..++-..... ..++ .++++.+.
T Consensus 314 L~~~~~~~-~~G--srIIiTTrd~~vl~~---~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c~ 386 (1153)
T PLN03210 314 LAGQTQWF-GSG--SRIIVITKDKHFLRA---HGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRAG 386 (1153)
T ss_pred HHhhCccC-CCC--cEEEEEeCcHHHHHh---cCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhC
Confidence 33222211 122 234556665322211 1356778899999999999998876443222 1222 33555566
Q ss_pred CCc
Q 011305 410 GYS 412 (489)
Q Consensus 410 G~s 412 (489)
|..
T Consensus 387 GLP 389 (1153)
T PLN03210 387 NLP 389 (1153)
T ss_pred CCc
Confidence 544
No 263
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.04 E-value=9.6e-06 Score=78.45 Aligned_cols=111 Identities=21% Similarity=0.264 Sum_probs=57.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc--hhh--------hhccchHHHHHHHHHHHH--hcCCcEEEEch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS--VVS--------KWRGDSEKLIKVLFELAR--HHAPSTIFLDE 309 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~--l~~--------~~~g~~~~~l~~lf~~A~--~~~p~VL~IDE 309 (489)
+..+||||+||+|||++|+.++.. .-++..+.+. +.+ .....+-..+...+.... ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 466999999999999999999732 1222222211 000 000111122223233222 24468999999
Q ss_pred hhhHHh------hhcccc--hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 310 IDAIIS------QRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 310 iD~l~~------~r~~~~--~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
++.+.. .+.... .+......+...++..+..+...+..|++++-.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 999865 221111 011122334555666665554455556555443
No 264
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.04 E-value=3.8e-05 Score=73.27 Aligned_cols=80 Identities=18% Similarity=0.322 Sum_probs=53.8
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh-hcc----------------------chHHH
Q 011305 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-WRG----------------------DSEKL 289 (489)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~-~~g----------------------~~~~~ 289 (489)
.++.+++.-++++||||+|||+++..++... +.+.++++..++... ... +....
T Consensus 6 ~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 6 GGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 3456667789999999999999999998754 667888888652111 000 01112
Q ss_pred HHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 290 IKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 290 l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
+..+........+++|+||-+..+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 33344444455789999999999864
No 265
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.03 E-value=2.9e-06 Score=91.61 Aligned_cols=199 Identities=23% Similarity=0.289 Sum_probs=109.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--CCcEEEEeccchhhhhc-----c----ch----HHHHHHHHHHHHhcCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWR-----G----DS----EKLIKVLFELARHHAPSTIFL 307 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--~~~~i~v~~s~l~~~~~-----g----~~----~~~l~~lf~~A~~~~p~VL~I 307 (489)
-.+++.|.|||||-.++|++.+.. ..||+.|+|..+..... | .. .+-.+..++.|.. +.||+
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFl 413 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFL 413 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHH
Confidence 579999999999999999998876 58899999966543221 1 11 1122223333333 79999
Q ss_pred chhhhHHhhhcccchhhHHHHHHHHHHHHHhc--------CCccCCCcEEEEEEeCCCCc-------ccHHHHhhccccc
Q 011305 308 DEIDAIISQRGEARSEHEASRRLKTELLIQMD--------GLTQSDELVFVLAATNLPWE-------LDAAMLRRLEKRI 372 (489)
Q Consensus 308 DEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld--------g~~~~~~~viVIatTn~p~~-------Ld~al~rRf~~~i 372 (489)
|||..+... ++..||.-+. +.. ..-.|-||++|+.+-. +-+.+.=|. ...
T Consensus 414 deIgd~p~~-------------~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~ 478 (606)
T COG3284 414 DEIGDMPLA-------------LQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAF 478 (606)
T ss_pred HHhhhchHH-------------HHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCe
Confidence 999888654 3445555443 222 3334788999987421 122222244 234
Q ss_pred ccCCCCHHHHH---HHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCC---
Q 011305 373 LVPLPDTEARR---AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDE--- 446 (489)
Q Consensus 373 ~~~~Pd~~eR~---~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~--- 446 (489)
.+.+|...+|. .+|.+++.+... ...+ .++.-+..|+...|.+++|.+-+.++.....++...
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~----------l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~ 547 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKREND-WRLQ----------LDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRV 547 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccC-CCcc----------CCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEc
Confidence 45566665554 455555544332 1111 223334445556666666665555554433222210
Q ss_pred -------C----CCCCCCCHHHHHHHHhhhCCChh
Q 011305 447 -------L----PQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 447 -------~----~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
. .....+..+.+.+|+...+.-.+
T Consensus 548 ~dlp~~l~~~~~~~~~~~~~~~l~~al~~~~~~is 582 (606)
T COG3284 548 SDLPPELLEEQATPREDIEKAALLAALQATNGNIS 582 (606)
T ss_pred ccCCHHHHhhhcccccchHHHHHHHHHHHcCCCHH
Confidence 0 01223556666677766665444
No 266
>PHA00729 NTP-binding motif containing protein
Probab=98.01 E-value=1.3e-05 Score=77.67 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+++|+|+||||||++|.++++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999875
No 267
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.97 E-value=1.6e-05 Score=90.32 Aligned_cols=206 Identities=20% Similarity=0.145 Sum_probs=126.9
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccC-chhhcccC--CCCc-eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGLL--SPWK-GILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~-~~~~~~~~--~~~~-~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.+.+....++.|.......+.+++...-.. +..+.... .... .++++||||+|||+.+..+|.++|..+++.|+++
T Consensus 313 k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~ 392 (871)
T KOG1968|consen 313 KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASD 392 (871)
T ss_pred ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccc
Confidence 344455567888777666777666554221 11122111 1112 3699999999999999999999999999999987
Q ss_pred hhhhhccc-------hHHHHHHHH---HHHH-hcCC-cEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 278 VVSKWRGD-------SEKLIKVLF---ELAR-HHAP-STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 278 l~~~~~g~-------~~~~l~~lf---~~A~-~~~p-~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
..++.... ....+...+ .... .... .||++||+|.+... . +..+..+...+. .
T Consensus 393 ~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-d---------Rg~v~~l~~l~~-----k 457 (871)
T KOG1968|consen 393 VRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-D---------RGGVSKLSSLCK-----K 457 (871)
T ss_pred cccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-h---------hhhHHHHHHHHH-----h
Confidence 76543311 111122222 0000 0112 39999999998762 1 222333333332 1
Q ss_pred CcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 346 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 346 ~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~dl~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
..+-||+++|........-..|....++|+.|+......-+..++....... +..++++.+.+ ++||++.+....
T Consensus 458 s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 458 SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 1244788898887766656666668899999999998877777766555543 34567777755 568887666544
Q ss_pred hH
Q 011305 425 MQ 426 (489)
Q Consensus 425 ~~ 426 (489)
.-
T Consensus 534 ~~ 535 (871)
T KOG1968|consen 534 FW 535 (871)
T ss_pred hh
Confidence 43
No 268
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00031 Score=68.61 Aligned_cols=172 Identities=17% Similarity=0.184 Sum_probs=96.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEeccchh-----hhhc----cc--------hHHHHHHHHHHHH-hcCC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKT---TFFNISASSVV-----SKWR----GD--------SEKLIKVLFELAR-HHAP 302 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~---~~i~v~~s~l~-----~~~~----g~--------~~~~l~~lf~~A~-~~~p 302 (489)
-+.++|+-|||||++.|++...++. -.+.++...+. ..++ .. .+..-+.+....+ ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 5789999999999999977776632 22344432221 1111 11 1122223333333 3456
Q ss_pred cEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCc--EEEEEEeCCCCcc-c---HHHHhhcccccccCC
Q 011305 303 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL--VFVLAATNLPWEL-D---AAMLRRLEKRILVPL 376 (489)
Q Consensus 303 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~--viVIatTn~p~~L-d---~al~rRf~~~i~~~~ 376 (489)
.++++||++.+.... ...+.-..+......+. ++.++-..--..+ - ..+..|+...+++++
T Consensus 133 v~l~vdEah~L~~~~-------------le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 133 VVLMVDEAHDLNDSA-------------LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred eEEeehhHhhhChhH-------------HHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 899999999886441 11221111111222222 3333222111111 1 233348877789999
Q ss_pred CCHHHHHHHHHHhcCCCCCC----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011305 377 PDTEARRAMFESLLPSQTGE----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 377 Pd~~eR~~IL~~~l~~~~~~----~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~r 429 (489)
.+.++-...++..++..... .+..+..+...+.| .|+-|.+++..|...+..
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 99998888888888665443 23346667777887 667888888877766543
No 269
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.96 E-value=7.6e-05 Score=68.07 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
...+.++|+||+||||++.-++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3579999999999999999999887
No 270
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.95 E-value=6.7e-06 Score=70.43 Aligned_cols=23 Identities=48% Similarity=0.908 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 011305 245 ILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~ 267 (489)
|.|+||||+|||++|+.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
No 271
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.93 E-value=0.00011 Score=68.45 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=46.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc------c-----------------------chH-----
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------G-----------------------DSE----- 287 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------g-----------------------~~~----- 287 (489)
+|++||||||||+++..++.+. |.++++++..+-..... | ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887754 67777776533221100 0 000
Q ss_pred HHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 288 KLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 288 ~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123444445567789999999988764
No 272
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.86 E-value=0.00012 Score=70.91 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=32.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
+.+.+.-++++||||+|||+++..+|.+. +.++++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45666778999999999999999998755 7788888876
No 273
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.85 E-value=4e-05 Score=89.28 Aligned_cols=136 Identities=24% Similarity=0.218 Sum_probs=88.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch------hhhhc-----cchHHHHHHHHHHHHhcCCcEEEEch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV------VSKWR-----GDSEKLIKVLFELARHHAPSTIFLDE 309 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l------~~~~~-----g~~~~~l~~lf~~A~~~~p~VL~IDE 309 (489)
..+++||.|.||+|||+++.++|++.|..++.|+.++- ++.+. |+....-..++ .|.+ ....+++||
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL-~amr-~G~WVlLDE 1619 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFL-HAMR-DGGWVLLDE 1619 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHH-HHhh-cCCEEEeeh
Confidence 35789999999999999999999999999999998643 22211 11111111222 2222 347999999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHHhc-----------CCccCCCcEEEEEEeCCCC------cccHHHHhhccccc
Q 011305 310 IDAIISQRGEARSEHEASRRLKTELLIQMD-----------GLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRI 372 (489)
Q Consensus 310 iD~l~~~r~~~~~~~~~~~~i~~~LL~~ld-----------g~~~~~~~viVIatTn~p~------~Ld~al~rRf~~~i 372 (489)
+.... +.++..|-..+| -.-...++..|+||-|..+ .|+..+..|| .++
T Consensus 1620 iNLaS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV 1685 (4600)
T COG5271 1620 INLAS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVV 1685 (4600)
T ss_pred hhhhH-------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heE
Confidence 96542 223333333333 2212234466666555432 3999999999 558
Q ss_pred ccCCCCHHHHHHHHHHhcCC
Q 011305 373 LVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l~~ 392 (489)
.+.-.+.++...|.......
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred EecccccchHHHHHHhhCCc
Confidence 88888888888888776643
No 274
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.80 E-value=0.0021 Score=68.43 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+|..++|+|++|+||||++..+|..+ +..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 346789999999999999999999877 5566666654
No 275
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.80 E-value=2.1e-05 Score=68.04 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
|+|.|||||||||+|+.+|+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988775553
No 276
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.79 E-value=0.00012 Score=64.37 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=42.3
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.|.|+.-+++.+..++...+..+. -..|.-+-|+|+||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~-----p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN-----PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC-----CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 789999999999999988775542 1223445699999999999999999986
No 277
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.75 E-value=0.00027 Score=75.68 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=56.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc------cc--------hHHHHHHHHHHHHhc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 300 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------g~--------~~~~l~~lf~~A~~~ 300 (489)
+..+...++|+|+||+|||+++..++... +.++++++..+...... |. .+..+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 45666789999999999999999998866 67888888755432211 10 111244555666667
Q ss_pred CCcEEEEchhhhHHhh
Q 011305 301 APSTIFLDEIDAIISQ 316 (489)
Q Consensus 301 ~p~VL~IDEiD~l~~~ 316 (489)
.|.+|+||++..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8899999999988654
No 278
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=97.73 E-value=2e-05 Score=60.74 Aligned_cols=33 Identities=39% Similarity=0.734 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhc
Q 011305 452 PIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 484 (489)
Q Consensus 452 ~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g 484 (489)
+|+++||..||++++||+++ ++++|++|++.||
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 69999999999999999885 7999999999998
No 279
>PRK08118 topology modulation protein; Reviewed
Probab=97.72 E-value=7.7e-05 Score=69.15 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
+.|++.||||+||||+|+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 358999999999999999999999999888774
No 280
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00022 Score=74.33 Aligned_cols=115 Identities=17% Similarity=0.264 Sum_probs=63.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----C-CcEEEEeccchh-------h---hhcc------chHHHHHHHHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASSVV-------S---KWRG------DSEKLIKVLFELA 297 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el----~-~~~i~v~~s~l~-------~---~~~g------~~~~~l~~lf~~A 297 (489)
...+..++|.||+|+||||++..+|..+ | ..+..+....+. . +..| .....+...+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-- 211 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-- 211 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--
Confidence 3445789999999999999999999864 3 345455543321 0 0001 01111222222
Q ss_pred HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhc
Q 011305 298 RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRL 368 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf 368 (489)
+.....+|+||.+.....+ ..+.+.+..+.+.......++|+.+|+..+.+...+ .+|
T Consensus 212 ~l~~~DlVLIDTaG~~~~d------------~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi-~~f 269 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQRD------------RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV-QAY 269 (374)
T ss_pred HhcCCCEEEEcCCCCCccc------------HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH-HHH
Confidence 2234589999999543211 123334444544433445577887888777766443 444
No 281
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.71 E-value=0.00018 Score=75.40 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=40.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
...++++.||+|||||+++.+++... | -.++.+.++.... . ..+.. -..+.+|+|||+..+..
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATLKF 274 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCCcC
Confidence 45799999999999999999988772 3 2233333332211 1 11111 23358999999987653
No 282
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.71 E-value=0.00037 Score=72.80 Aligned_cols=79 Identities=24% Similarity=0.340 Sum_probs=55.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc------cc--------hHHHHHHHHHHHHhc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 300 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------g~--------~~~~l~~lf~~A~~~ 300 (489)
+..++.-++|+|+||+|||+++..+|... +.++++++..+-..... |. .+..+..+.+.....
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 35566779999999999999999998765 46788887654322110 10 112345566666677
Q ss_pred CCcEEEEchhhhHHhh
Q 011305 301 APSTIFLDEIDAIISQ 316 (489)
Q Consensus 301 ~p~VL~IDEiD~l~~~ 316 (489)
+|.+|+||++..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998644
No 283
>PF14516 AAA_35: AAA-like domain
Probab=97.69 E-value=0.0019 Score=66.46 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=89.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc-------------------------------
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD------------------------------- 285 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~------------------------------- 285 (489)
.++..+.+.||..+|||++...+.+.+ +...+.+++..+.......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 456789999999999999999988766 7788888876543211100
Q ss_pred hHHHHHHHHHH---HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc--C-CCcEEEEEEeCCCCc
Q 011305 286 SEKLIKVLFEL---ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--S-DELVFVLAATNLPWE 359 (489)
Q Consensus 286 ~~~~l~~lf~~---A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--~-~~~viVIatTn~p~~ 359 (489)
........|+. ....+|-||+|||+|.+..... ........|-...+.-.. . ..-+++++.+..+..
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~ 181 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYI 181 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-------hHHHHHHHHHHHHHhcccCcccceEEEEEecCccccc
Confidence 11111222222 1224678999999999975311 112222222222221110 1 122344444433322
Q ss_pred ccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 360 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 360 Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
....-.+ .+...+.++..+.++-..+++.+-... ....++.+-..|.|..
T Consensus 182 ~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~---~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 182 ILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF---SQEQLEQLMDWTGGHP 233 (331)
T ss_pred ccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC---CHHHHHHHHHHHCCCH
Confidence 2111112 345667778889999888887763221 1223777888888754
No 284
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.67 E-value=0.00026 Score=72.11 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=57.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-EEEeccchhhh-------hccchHHHHHHHHHHHHhcCCcEEEEchh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF-FNISASSVVSK-------WRGDSEKLIKVLFELARHHAPSTIFLDEI 310 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~-i~v~~s~l~~~-------~~g~~~~~l~~lf~~A~~~~p~VL~IDEi 310 (489)
..+++|+.|||+-|.|||+|.-.....+-.+- ..+.-..++.. ..|++.- +..+-... .....||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dp-l~~iA~~~-~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDP-LPPIADEL-AAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCc-cHHHHHHH-HhcCCEEEeeee
Confidence 45679999999999999999999998874322 22222222211 1122211 11111111 112369999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 311 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 311 D~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
..-- -....++..|+..+- ..+|.+++|+|.+
T Consensus 140 ~VtD----------I~DAMiL~rL~~~Lf-----~~GV~lvaTSN~~ 171 (367)
T COG1485 140 EVTD----------IADAMILGRLLEALF-----ARGVVLVATSNTA 171 (367)
T ss_pred eecC----------hHHHHHHHHHHHHHH-----HCCcEEEEeCCCC
Confidence 5321 112345555655542 2358889999876
No 285
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.67 E-value=0.00036 Score=67.05 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=31.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
+..++.-++++|+||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45666779999999999999999999765 5677778654
No 286
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.67 E-value=0.00044 Score=67.51 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=49.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc-----------------------------c-
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR-----------------------------G- 284 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~-----------------------------g- 284 (489)
..++...+++.||||||||+++..++... +.+.++++..+-..... +
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 35566789999999999999986655543 56677776432111100 0
Q ss_pred -chHHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 285 -DSEKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 285 -~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
..+..+..+........|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 012334445555555678999999998765
No 287
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.67 E-value=8.8e-05 Score=70.32 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=57.4
Q ss_pred EEEEcCCCCcHHHHHHHH-HHHh---CCcEEEEeccchhhhhccc-----hHH------------HHHHHHHHHHhcCCc
Q 011305 245 ILLFGPPGTGKTMLAKAV-ATEC---KTTFFNISASSVVSKWRGD-----SEK------------LIKVLFELARHHAPS 303 (489)
Q Consensus 245 vLL~GppGtGKT~lAral-A~el---~~~~i~v~~s~l~~~~~g~-----~~~------------~l~~lf~~A~~~~p~ 303 (489)
.+++|.||+|||+.|-.. .... |.+++. +...|.-..... ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988555 4332 666554 443222111100 000 001111111112458
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCC
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 377 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~P 377 (489)
+|+|||+..+.+.+...... ....+..+. ..+..+.-|+.+|.++..+|+.+++..+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~~~-------~~~~~~~l~--~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK-------VPEIIEFLA--QHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T-----------HHHHGGG--GCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccccc-------chHHHHHHH--HhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 99999999998887652110 112223333 223334567889999999999998877666655443
No 288
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.66 E-value=6.7e-05 Score=81.25 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=48.6
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEec
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISA 275 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~~ 275 (489)
.|+|+.|++++++++.+.+...... +....+.++|.||||+|||+||+.|++.+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~g------l~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQG------LEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHh------cCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4889999999999999887443221 12344678999999999999999999987 456676654
No 289
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.65 E-value=5.4e-05 Score=69.49 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
++..++|+|+||||||++|+.+|+.++.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 457899999999999999999999999888853
No 290
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.63 E-value=0.0031 Score=66.90 Aligned_cols=170 Identities=23% Similarity=0.259 Sum_probs=90.0
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccch
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~ 286 (489)
-.|.|.+++|+.+.-++---. ......+ ....-+|||.|.|||.|+.|.+-+-+-.-.-+|.-.-.. .-.|-+
T Consensus 331 PSIfG~~DiKkAiaClLFgGs--rK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGS---SAAGLT 405 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGS--RKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGS---SAAGLT 405 (729)
T ss_pred chhcCchhHHHHHHHHhhcCc--cccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCc---ccccce
Confidence 478999999999986553321 1111111 233457999999999999999998776544333211000 000101
Q ss_pred HHHHH-----HHHHHH---HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-cCCCcEEEEEEeCCC
Q 011305 287 EKLIK-----VLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLP 357 (489)
Q Consensus 287 ~~~l~-----~lf~~A---~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-~~~~~viVIatTn~p 357 (489)
+..++ +.+-.. --...+|++|||+|.+-.+.. -.-|++.++. ++--.=-|+. .-+.+.-|++++|.+
T Consensus 406 ASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR--VAIHEAMEQQ--TISIAKAGITT~LNSRtSVLAAANpv 481 (729)
T KOG0481|consen 406 ASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR--VAIHEAMEQQ--TISIAKAGITTTLNSRTSVLAAANPV 481 (729)
T ss_pred eeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhh--hHHHHHHHhh--hHHHhhhcceeeecchhhhhhhcCCc
Confidence 10000 000000 001247999999999854311 1112221111 0100111331 234456688888876
Q ss_pred Cc-------------ccHHHHhhcccccccCCCCHHHHHHHHH
Q 011305 358 WE-------------LDAAMLRRLEKRILVPLPDTEARRAMFE 387 (489)
Q Consensus 358 ~~-------------Ld~al~rRf~~~i~~~~Pd~~eR~~IL~ 387 (489)
.. +-+.+++||+.++-+..-..++|-..+.
T Consensus 482 fGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lA 524 (729)
T KOG0481|consen 482 FGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLA 524 (729)
T ss_pred cccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHH
Confidence 21 4489999999988777765554444333
No 291
>PRK07261 topology modulation protein; Provisional
Probab=97.63 E-value=0.00014 Score=67.71 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.+++.|+||+||||+|+.++..++.+++..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999999988776543
No 292
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00031 Score=79.70 Aligned_cols=162 Identities=23% Similarity=0.364 Sum_probs=107.7
Q ss_pred CccccCc-HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEecc
Q 011305 208 WESIKGL-ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISAS 276 (489)
Q Consensus 208 ~~dliG~-e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~~s 276 (489)
++.++|. ++-.+.+.+.+.. ...++-+|.|.||+|||.++.-+|+.. +..++.++..
T Consensus 185 ldPvigr~deeirRvi~iL~R------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 6778886 5555555544422 223688999999999999999999976 3456677766
Q ss_pred chh--hhhccchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 277 SVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 277 ~l~--~~~~g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
.+. .++.|+.+..++.+...+.. ....||||||++.+.+.....+ .-...+ +|..+- ..+. +-+|+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-----~~d~~n-lLkp~L---~rg~-l~~IGa 322 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-----AIDAAN-LLKPLL---ARGG-LWCIGA 322 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-----HHHHHH-hhHHHH---hcCC-eEEEec
Confidence 443 45778899999999998884 4557999999999987654311 111122 222221 2233 556666
Q ss_pred eC-CCC----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCC
Q 011305 354 TN-LPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 354 Tn-~p~----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
|. .-. .=+|++-+||+. +.++.|+.+.-..||......
T Consensus 323 tT~e~Y~k~iekdPalErrw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALERRWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred ccHHHHHHHHhhCcchhhCcce-eEeccCcccchhhhhhhhhhh
Confidence 54 221 257899999954 788999877766666665544
No 293
>PHA02624 large T antigen; Provisional
Probab=97.62 E-value=0.00019 Score=78.13 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhc
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~ 318 (489)
.+..+.++|+||||||||+++.+|++.++...+.|+++.-... |...-.....+.+|||+-.-.-...
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccc
Confidence 4555689999999999999999999999777787875432111 2222111225888888843221100
Q ss_pred ccchhhHHHHHHHHHHHHHhcCC-cc------CC----CcEEEEEEeCCCCcccHHHHhhcccccccCC
Q 011305 319 EARSEHEASRRLKTELLIQMDGL-TQ------SD----ELVFVLAATNLPWELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 319 ~~~~~~~~~~~i~~~LL~~ldg~-~~------~~----~~viVIatTn~p~~Ld~al~rRf~~~i~~~~ 376 (489)
. ......-.-+..|-+.+||. .. .+ ..-..|.|||. ..++..+.-||...+.|..
T Consensus 496 ~--Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 496 D--LPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred c--CCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 0 00000000113455666665 10 00 00123447775 4688889889988888765
No 294
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.61 E-value=0.00054 Score=66.71 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=51.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc-------------------------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------------------------------- 283 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------------------------------- 283 (489)
+.+.+..++++|+||||||+++..++.+. +.+.++++..+-.....
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 45667889999999999999999997653 67777776533221100
Q ss_pred --cchHHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 284 --GDSEKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 284 --g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
......+..+........|.+++||++..+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0112333444444555678999999998764
No 295
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.60 E-value=0.0009 Score=65.47 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=31.6
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
++.+++..+|++||||||||+++..++.+. |.+.++++..+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 456777889999999999999998776542 66777776533
No 296
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.59 E-value=0.00074 Score=70.82 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeccchh--h----
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVV--S---- 280 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s~l~--~---- 280 (489)
.+.+++.+.+.+...+....... ....+..++|+||+|+||||++.-+|..+ +..+..+++.... .
T Consensus 147 ~~~v~~~l~~~l~~~i~~~~~~~-~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL 225 (388)
T PRK12723 147 YDKVRDSVIIYIAKTIKCSGSII-DNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI 225 (388)
T ss_pred HHHHHHHHHHHHHHHhhccCccc-cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHH
Confidence 45566665555443332111110 11234679999999999999999999865 2344444433211 0
Q ss_pred -h---------hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 281 -K---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 281 -~---------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
. ........+...+... ....+|+||.+.....+ ...+.++...++........++|
T Consensus 226 ~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~-----------~~~l~el~~~l~~~~~~~e~~LV 292 (388)
T PRK12723 226 QTYGDIMGIPVKAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKD-----------FMKLAEMKELLNACGRDAEFHLA 292 (388)
T ss_pred HHHhhcCCcceEeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccC-----------HHHHHHHHHHHHhcCCCCeEEEE
Confidence 0 1111222233333332 34579999999765321 11133444444433323345777
Q ss_pred EEEeCCCCcccHHHHhhc
Q 011305 351 LAATNLPWELDAAMLRRL 368 (489)
Q Consensus 351 IatTn~p~~Ld~al~rRf 368 (489)
+.+|.....+.. +.++|
T Consensus 293 lsat~~~~~~~~-~~~~~ 309 (388)
T PRK12723 293 VSSTTKTSDVKE-IFHQF 309 (388)
T ss_pred EcCCCCHHHHHH-HHHHh
Confidence 777777666663 44444
No 297
>PRK14974 cell division protein FtsY; Provisional
Probab=97.58 E-value=0.0013 Score=67.85 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=44.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------hhc-------------cchHHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KWR-------------GDSEKLIKVLFELAR 298 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~~~-------------g~~~~~l~~lf~~A~ 298 (489)
+.-++|.||+|+||||++..+|..+ +..+..+++..+.. .+. +.....+......++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999888766 45555555432210 000 111122333444444
Q ss_pred hcCCcEEEEchhhhHH
Q 011305 299 HHAPSTIFLDEIDAII 314 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~ 314 (489)
.....+|+||....+.
T Consensus 220 ~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 220 ARGIDVVLIDTAGRMH 235 (336)
T ss_pred hCCCCEEEEECCCccC
Confidence 4555789999886553
No 298
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.57 E-value=0.00042 Score=70.82 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=53.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----------------hccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~----------------~~g~~~~~l~~lf~~A~ 298 (489)
++++++.++|+||||||||+|+-.++.+. +.+++++++.+.... .+...+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45666789999999999999988876654 677777876442211 01122333333434445
Q ss_pred hcCCcEEEEchhhhHHhh
Q 011305 299 HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~~ 316 (489)
...+.+|+||-+..+.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567899999999998864
No 299
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.56 E-value=0.00058 Score=69.88 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=53.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----------------hccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~----------------~~g~~~~~l~~lf~~A~ 298 (489)
+++.++-+.++||||||||+++-.++.+. +...++++..+-... .+...+..+..+-...+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45666789999999999999999887644 677888876432111 01122333333333445
Q ss_pred hcCCcEEEEchhhhHHhh
Q 011305 299 HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~~ 316 (489)
...+.+|+||-+-.+.+.
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 567899999999999863
No 300
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.56 E-value=0.00019 Score=63.71 Aligned_cols=34 Identities=41% Similarity=0.637 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
+++.|||||||||+|+.+++.++ ...++..++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHH
Confidence 78999999999999999999998 44555555443
No 301
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.55 E-value=0.00059 Score=65.76 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=31.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---C------CcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---K------TTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~------~~~i~v~~s~ 277 (489)
+..++.-+.|+||||+|||+++..+|... + ..+++++..+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 45666779999999999999999998764 3 5667777644
No 302
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.54 E-value=0.0018 Score=68.31 Aligned_cols=132 Identities=20% Similarity=0.154 Sum_probs=76.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~ 323 (489)
.++++||.+|||||+++.+.+......++++..++......- ......+..+.......||||||+.+..=
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~W------- 109 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPDW------- 109 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchhH-------
Confidence 789999999999999999988886656777666654332211 11122222222224479999999876321
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC---cccHHHHhhcccccccCCCCHHHHHH-------------HHH
Q 011305 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLEKRILVPLPDTEARRA-------------MFE 387 (489)
Q Consensus 324 ~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~---~Ld~al~rRf~~~i~~~~Pd~~eR~~-------------IL~ 387 (489)
...+..+. |... . .+ +|.+++..- ...+.+..|. ..+.+.+.+..|... .++
T Consensus 110 ----~~~lk~l~---d~~~--~-~v-~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~ 177 (398)
T COG1373 110 ----ERALKYLY---DRGN--L-DV-LITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFE 177 (398)
T ss_pred ----HHHHHHHH---cccc--c-eE-EEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHH
Confidence 12223332 2111 1 24 333333332 2344555575 667777778888754 567
Q ss_pred HhcCCCCCC
Q 011305 388 SLLPSQTGE 396 (489)
Q Consensus 388 ~~l~~~~~~ 396 (489)
.++...+.+
T Consensus 178 ~Yl~~GGfP 186 (398)
T COG1373 178 KYLETGGFP 186 (398)
T ss_pred HHHHhCCCc
Confidence 777665554
No 303
>PHA02774 E1; Provisional
Probab=97.53 E-value=0.00044 Score=75.08 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-Eec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~-v~~ 275 (489)
.++++|+||||||||++|-+|++.++..++. +|.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 4689999999999999999999999655543 554
No 304
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.00076 Score=65.76 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=91.5
Q ss_pred CceEEEEcCCC-CcHHHHHHHHHHHhCC---------cEEEEeccchhhhh-ccchHHHHHHHHHHH----HhcCCcEEE
Q 011305 242 WKGILLFGPPG-TGKTMLAKAVATECKT---------TFFNISASSVVSKW-RGDSEKLIKVLFELA----RHHAPSTIF 306 (489)
Q Consensus 242 ~~~vLL~GppG-tGKT~lAralA~el~~---------~~i~v~~s~l~~~~-~g~~~~~l~~lf~~A----~~~~p~VL~ 306 (489)
.+..||.|..+ +||..++.-+++.+.. .++.+....-..+. ..-.-..++.+.... ......|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 36799999998 9999999988887622 23333321100000 001223344444333 233456999
Q ss_pred EchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHH
Q 011305 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMF 386 (489)
Q Consensus 307 IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL 386 (489)
|+++|.+... ..+.||+.++ .++..+++|..|.++..+.+.++||| ..+.++.|+...-.+++
T Consensus 95 I~~ae~mt~~-------------AANALLKtLE---EPP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~ 157 (263)
T PRK06581 95 IYSAELMNLN-------------AANSCLKILE---DAPKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELY 157 (263)
T ss_pred EechHHhCHH-------------HHHHHHHhhc---CCCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHH
Confidence 9999998533 5688999987 34455777778888999999999999 66899999998888887
Q ss_pred HHhcCCC
Q 011305 387 ESLLPSQ 393 (489)
Q Consensus 387 ~~~l~~~ 393 (489)
...+...
T Consensus 158 ~~~~~p~ 164 (263)
T PRK06581 158 SQFIQPI 164 (263)
T ss_pred HHhcccc
Confidence 7776543
No 305
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.51 E-value=0.00069 Score=65.71 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=31.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+.+++.-+.|+||||||||+++..++... +...++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 45666778999999999999999998553 25677787654
No 306
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.49 E-value=0.00046 Score=80.92 Aligned_cols=134 Identities=18% Similarity=0.196 Sum_probs=88.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc------hhhhhccchHHH---HHHHHHHHHhcCCcEEEEchhhhH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVSKWRGDSEKL---IKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~------l~~~~~g~~~~~---l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
-.+||.||+.+|||+.+..+|++.|..|+.|+-.+ ..+.|+.+.... -..++-.|.+.. -.|++||+...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 46999999999999999999999999999998643 334444222211 122333344333 58999999654
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhc-----------CCccCCCcEEEEEEeCCCC------cccHHHHhhcccccccCC
Q 011305 314 ISQRGEARSEHEASRRLKTELLIQMD-----------GLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 314 ~~~r~~~~~~~~~~~~i~~~LL~~ld-----------g~~~~~~~viVIatTn~p~------~Ld~al~rRf~~~i~~~~ 376 (489)
+.+ ++..|-..+| .+..+.+...++||-|.|. .|..|++.|| ..++|..
T Consensus 968 pTD-------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFdd 1033 (4600)
T COG5271 968 PTD-------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDD 1033 (4600)
T ss_pred cHH-------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-Hhhhccc
Confidence 322 3333333333 1222334466666666663 3889999999 6688888
Q ss_pred CCHHHHHHHHHHhcC
Q 011305 377 PDTEARRAMFESLLP 391 (489)
Q Consensus 377 Pd~~eR~~IL~~~l~ 391 (489)
-.+++...||...++
T Consensus 1034 ipedEle~ILh~rc~ 1048 (4600)
T COG5271 1034 IPEDELEEILHGRCE 1048 (4600)
T ss_pred CcHHHHHHHHhccCc
Confidence 888999999987664
No 307
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.47 E-value=0.0013 Score=63.55 Aligned_cols=77 Identities=25% Similarity=0.392 Sum_probs=52.4
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhh--------------h----------------
Q 011305 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------W---------------- 282 (489)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~--------------~---------------- 282 (489)
++.+++..+|+.||||||||+++..++.+. |.+.++++..+-... +
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 346677889999999999999998876533 778887775332110 0
Q ss_pred ---ccchHHHHHHHHHHHHhcCCcEEEEchhhhH
Q 011305 283 ---RGDSEKLIKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 283 ---~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
.......+..+.+.....++.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1123444555666666777899999999998
No 308
>PRK04296 thymidine kinase; Provisional
Probab=97.46 E-value=0.00097 Score=63.09 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
.-.+++||+|+|||+++..++..+ +..++.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 357899999999999999888876 566665643
No 309
>PRK06762 hypothetical protein; Provisional
Probab=97.45 E-value=0.00044 Score=63.43 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.-++|+|+||+||||+|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 5688999999999999999999997667777765554
No 310
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.45 E-value=0.00013 Score=67.42 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=38.7
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEeccch
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSV 278 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---~i~v~~s~l 278 (489)
++|.++..+++...+.. .. ...++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 67888999998887741 11 2345789999999999999999998877443 777776554
No 311
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.43 E-value=0.00015 Score=71.87 Aligned_cols=75 Identities=27% Similarity=0.371 Sum_probs=50.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH------HhCCcEEEEeccchhhhhcc-chHHHHHHHHHHH--------HhcCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT------ECKTTFFNISASSVVSKWRG-DSEKLIKVLFELA--------RHHAPSTIF 306 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~------el~~~~i~v~~s~l~~~~~g-~~~~~l~~lf~~A--------~~~~p~VL~ 306 (489)
...+||.||+|.||+.+|+.+.. ++..+|++|||..+.+...- ..-..++..|.-| +....++||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 35799999999999999999875 45789999999887543210 0001122222222 223457999
Q ss_pred EchhhhHHhh
Q 011305 307 LDEIDAIISQ 316 (489)
Q Consensus 307 IDEiD~l~~~ 316 (489)
+|||..+..+
T Consensus 288 ldeigelgad 297 (531)
T COG4650 288 LDEIGELGAD 297 (531)
T ss_pred hHhhhhcCcc
Confidence 9999888654
No 312
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.00042 Score=66.80 Aligned_cols=72 Identities=26% Similarity=0.388 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEec-cchhhhhccc-------------hHHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA-SSVVSKWRGD-------------SEKLIKVLFELAR 298 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el--------~~~~i~v~~-s~l~~~~~g~-------------~~~~l~~lf~~A~ 298 (489)
.+.+.|+.|||||||||+.|-+|+-+ ...+..++- +++.+...|. ..-+-..+....+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 45689999999999999999999976 233444543 3443322222 1122334566778
Q ss_pred hcCCcEEEEchhhh
Q 011305 299 HHAPSTIFLDEIDA 312 (489)
Q Consensus 299 ~~~p~VL~IDEiD~ 312 (489)
.+.|.|+++|||..
T Consensus 216 sm~PEViIvDEIGt 229 (308)
T COG3854 216 SMSPEVIIVDEIGT 229 (308)
T ss_pred hcCCcEEEEecccc
Confidence 89999999999954
No 313
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.42 E-value=0.0018 Score=66.58 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=90.9
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh--------
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-------- 281 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~-------- 281 (489)
.+.+.+...+.|...+-.- + -.-|.++.|+|-+|||||.+.+.+.+.++.+.+.+++-+...-
T Consensus 7 ~v~~Re~qi~~L~~Llg~~---~------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNN---S------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCCC---C------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 4566677777777765321 1 1235678999999999999999999999999999987554311
Q ss_pred -------hccch----HHHHHH---HHHH---HHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc
Q 011305 282 -------WRGDS----EKLIKV---LFEL---ARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 343 (489)
Q Consensus 282 -------~~g~~----~~~l~~---lf~~---A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~ 343 (489)
+.|.. ...+.. .|.+ +... +.-.|++|.+|.+... ...++..++..-+-. +
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~----------~a~ll~~l~~L~el~-~ 146 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM----------DAILLQCLFRLYELL-N 146 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc----------chHHHHHHHHHHHHh-C
Confidence 11111 111221 2222 2222 2458889999998521 123444454433322 2
Q ss_pred CCCcEEEEEEeCCCCcccHHHHh----hcccccccCCCCHHHHHHHHHHhcC
Q 011305 344 SDELVFVLAATNLPWELDAAMLR----RLEKRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 344 ~~~~viVIatTn~p~~Ld~al~r----Rf~~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
.+ .+.++...-.+. ..... --...++||.|+.++-..|+..--.
T Consensus 147 ~~-~i~iils~~~~e---~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 147 EP-TIVIILSAPSCE---KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred CC-ceEEEEeccccH---HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 22 233332222211 11221 1235689999999999998876543
No 314
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.41 E-value=0.0014 Score=62.47 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=41.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-----CCcE-------------EEEeccchhhhhcc---chHHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTF-------------FNISASSVVSKWRG---DSEKLIKVLFELARH 299 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el-----~~~~-------------i~v~~s~l~~~~~g---~~~~~l~~lf~~A~~ 299 (489)
..+.++|.||.|+||||+.|.++... |.++ ..++..+-.....+ .....+..+++.+..
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~ 103 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKK 103 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccC
Confidence 34678999999999999999998533 4332 11111111000000 011335555655554
Q ss_pred cCCcEEEEchhh
Q 011305 300 HAPSTIFLDEID 311 (489)
Q Consensus 300 ~~p~VL~IDEiD 311 (489)
..|.+|++||.-
T Consensus 104 ~~p~llllDEp~ 115 (199)
T cd03283 104 GEPVLFLLDEIF 115 (199)
T ss_pred CCCeEEEEeccc
Confidence 578999999973
No 315
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.40 E-value=0.00029 Score=70.09 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=59.7
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEec-cchh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVV 279 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~-s~l~ 279 (489)
...+++++.-.....+.+.+.+....+ ...++++.||+||||||+++++...+. ..++.+-- .++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 344677776666666666666554322 247899999999999999999999883 34444432 1221
Q ss_pred hhhc-------cchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 280 SKWR-------GDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 280 ~~~~-------g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
-... .........++..+....|.+|++.|+-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1100 0122335566777778889999999994
No 316
>PRK13947 shikimate kinase; Provisional
Probab=97.39 E-value=0.00016 Score=66.56 Aligned_cols=32 Identities=44% Similarity=0.564 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 36999999999999999999999999987654
No 317
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.38 E-value=0.015 Score=61.09 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=27.6
Q ss_pred cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC
Q 011305 359 ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 359 ~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
.|..++-.|.-+.|.+...+.+.-+..+...+...
T Consensus 198 ~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 198 PLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 37777777666889999999998888888888654
No 318
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.35 E-value=0.00098 Score=57.38 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
++++++||+|+|||+++-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998888876
No 319
>PRK03839 putative kinase; Provisional
Probab=97.35 E-value=0.00018 Score=67.14 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999887654
No 320
>PRK10536 hypothetical protein; Provisional
Probab=97.34 E-value=0.0023 Score=63.30 Aligned_cols=45 Identities=27% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
.+..+.+.......+...+.. ...+++.||+|||||++|.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344566665555555554421 247899999999999999999985
No 321
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.33 E-value=0.00041 Score=66.07 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=42.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEec-cchhhh---------hccchHHHHHHHHHHHHhcCCcEEEEch
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVVSK---------WRGDSEKLIKVLFELARHHAPSTIFLDE 309 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~----~~~i~v~~-s~l~~~---------~~g~~~~~l~~lf~~A~~~~p~VL~IDE 309 (489)
-+++.||+|+||||++++++..+. ..++.+.. .++... .++.........+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 478999999999999999998874 22332221 111100 0111112244455666667899999999
Q ss_pred h
Q 011305 310 I 310 (489)
Q Consensus 310 i 310 (489)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 322
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.33 E-value=0.0017 Score=67.11 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..+|+|++|||.-|||||+|.-.....+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3568999999999999999999887654
No 323
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.32 E-value=0.00066 Score=67.70 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=57.7
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe-ccchhhhh
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVSKW 282 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~-~s~l~~~~ 282 (489)
.++++.-.+...+.+++++.. +...++|.||+|+||||+++++...+. ..++.+. ..++.-..
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~ 124 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPG 124 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCC
Confidence 456665556666666665432 224589999999999999999988773 3344442 12221110
Q ss_pred ------ccchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 283 ------RGDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 283 ------~g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
..............+....|.+|+++|+.
T Consensus 125 ~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 125 INQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred ceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 01111234556667777899999999994
No 324
>PRK00625 shikimate kinase; Provisional
Probab=97.30 E-value=0.00023 Score=66.48 Aligned_cols=31 Identities=39% Similarity=0.559 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
+|+|.|.||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999988765
No 325
>PRK04328 hypothetical protein; Provisional
Probab=97.30 E-value=0.0037 Score=61.76 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=29.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
+.+++..+|++||||||||+++..++.+. |.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45667889999999999999998876542 566666654
No 326
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.30 E-value=0.00023 Score=64.06 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
+++|+|+||+|||++|+.+|+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999887544
No 327
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.29 E-value=0.0017 Score=69.77 Aligned_cols=79 Identities=24% Similarity=0.326 Sum_probs=54.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc------cc--------hHHHHHHHHHHHHhc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 300 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------g~--------~~~~l~~lf~~A~~~ 300 (489)
+..++.-++|.|+||+|||+++..++... +.++++++..+-..... |- .+..+..+.......
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 35666789999999999999999998765 45788888754332110 10 011234455566667
Q ss_pred CCcEEEEchhhhHHhh
Q 011305 301 APSTIFLDEIDAIISQ 316 (489)
Q Consensus 301 ~p~VL~IDEiD~l~~~ 316 (489)
+|.+|+||.+..+...
T Consensus 170 ~~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 170 NPQACVIDSIQTLYSP 185 (454)
T ss_pred CCcEEEEecchhhccc
Confidence 8999999999988643
No 328
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00022 Score=64.25 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=29.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.++|++|-||||||+++..+|..++.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 58999999999999999999999999888764
No 329
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.26 E-value=0.0097 Score=60.47 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=25.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
.++..+.|+|+=|+|||++.+.+-+++...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 356789999999999999999999988444
No 330
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.25 E-value=0.0027 Score=62.29 Aligned_cols=135 Identities=11% Similarity=0.191 Sum_probs=75.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--EEEeccchhhhh--------cc------chHHHH-------HHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF--FNISASSVVSKW--------RG------DSEKLI-------KVLFE 295 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~--i~v~~s~l~~~~--------~g------~~~~~l-------~~lf~ 295 (489)
...+-.+++.|++|||||+++..+...+...+ +.+-+......+ +. +.+..+ .....
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 34456899999999999999999988774322 222221111111 10 011111 11111
Q ss_pred HHHh---cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccc
Q 011305 296 LARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 372 (489)
Q Consensus 296 ~A~~---~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i 372 (489)
.... ..+.+|++||+..- . .-...+..++. ..+.-++.+|..+.....+++.++.-.+..+
T Consensus 90 k~~~~k~~~~~LiIlDD~~~~----------~-~k~~~l~~~~~-----~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i 153 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGDK----------K-LKSKILRQFFN-----NGRHYNISIIFLSQSYFHLPPNIRSNIDYFI 153 (241)
T ss_pred hhcccCCCCCeEEEEeCCCCc----------h-hhhHHHHHHHh-----cccccceEEEEEeeecccCCHHHhhcceEEE
Confidence 1111 22579999997320 0 01122333332 2333457788888888899999988777767
Q ss_pred ccCCCCHHHHHHHHHHhc
Q 011305 373 LVPLPDTEARRAMFESLL 390 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l 390 (489)
.+. .+.....-|++.+.
T Consensus 154 ~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNMN 170 (241)
T ss_pred Eec-CcHHHHHHHHHhcc
Confidence 665 46666666666543
No 331
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.25 E-value=0.0023 Score=59.52 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=47.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHH--------------------HHHHHHHHHHhcCCc
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEK--------------------LIKVLFELARHHAPS 303 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~--------------------~l~~lf~~A~~~~p~ 303 (489)
.+|+.|+||||||++|..++..++.+++++........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 58999999999999999999999888777766543211 1111 122333221 13357
Q ss_pred EEEEchhhhHHhhh
Q 011305 304 TIFLDEIDAIISQR 317 (489)
Q Consensus 304 VL~IDEiD~l~~~r 317 (489)
+++||-+..+..+.
T Consensus 79 ~VlID~Lt~~~~n~ 92 (170)
T PRK05800 79 CVLVDCLTTWVTNL 92 (170)
T ss_pred EEEehhHHHHHHHH
Confidence 89999999887653
No 332
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.25 E-value=0.0027 Score=61.18 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999984
No 333
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.23 E-value=0.0024 Score=59.37 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=47.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh-hc----------------cchHHHHHHHHHHHHhcCCcEEEE
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WR----------------GDSEKLIKVLFELARHHAPSTIFL 307 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~-~~----------------g~~~~~l~~lf~~A~~~~p~VL~I 307 (489)
+|+.|++|+|||++|..++...+.+.+++....-.+. +. .+....+...+... .++.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999988778888765432211 00 11222333333221 14679999
Q ss_pred chhhhHHhhhc
Q 011305 308 DEIDAIISQRG 318 (489)
Q Consensus 308 DEiD~l~~~r~ 318 (489)
|-+..+....-
T Consensus 80 Dclt~~~~n~l 90 (169)
T cd00544 80 DCLTLWVTNLL 90 (169)
T ss_pred EcHhHHHHHhC
Confidence 99998877643
No 334
>PRK13695 putative NTPase; Provisional
Probab=97.23 E-value=0.0018 Score=60.02 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988775
No 335
>PRK09354 recA recombinase A; Provisional
Probab=97.23 E-value=0.0024 Score=65.87 Aligned_cols=78 Identities=24% Similarity=0.325 Sum_probs=52.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh-h---------------ccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-W---------------RGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~-~---------------~g~~~~~l~~lf~~A~ 298 (489)
+++.++-++++||||||||+|+-.++.+. +...++++..+-... + +...+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45666789999999999999999877544 677788876442211 0 1112233333333445
Q ss_pred hcCCcEEEEchhhhHHh
Q 011305 299 HHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~ 315 (489)
...+.+|+||-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999999876
No 336
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.23 E-value=0.00028 Score=65.61 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.+-++|.|+||+||||+|+.+++.++.+++.++...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 3568999999999999999999999888776655433
No 337
>PRK14532 adenylate kinase; Provisional
Probab=97.22 E-value=0.00031 Score=65.90 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=29.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
+++|.|||||||||+++.+|+.++.++ ++..++..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 589999999999999999999998655 555555544
No 338
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.21 E-value=0.00071 Score=64.68 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=58.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~ 323 (489)
-++|+||+|||||.+|-++|++.|.|++..+.-.......-.+.+-...-+... .=++|||-..--+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~-----~RiyL~~r~l~~G~------- 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGT-----RRIYLDDRPLSDGI------- 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT------EEEES----GGG-S-------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHccc-----ceeeeccccccCCC-------
Confidence 478999999999999999999999999999875554332211211111111111 13788765332111
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhh-----cc-cccccCCCCHHHHHHHHHHhc
Q 011305 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRR-----LE-KRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 324 ~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rR-----f~-~~i~~~~Pd~~eR~~IL~~~l 390 (489)
-...+....|+..++.+.. ...+++ -.-..+.+..-..++ |. ....+++|+.+.-..-.+...
T Consensus 71 -i~a~ea~~~Li~~v~~~~~-~~~~Il--EGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv 139 (233)
T PF01745_consen 71 -INAEEAHERLISEVNSYSA-HGGLIL--EGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRV 139 (233)
T ss_dssp ---HHHHHHHHHHHHHTTTT-SSEEEE--EE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHhccc-cCceEE--eCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHH
Confidence 1123344566777776655 333333 332223333323332 32 334567777766554444333
No 339
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.21 E-value=0.0045 Score=58.86 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
+..++.||||||||++++.+...+ +..++.+..+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 568899999999999999988766 5666666543
No 340
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.0023 Score=60.79 Aligned_cols=24 Identities=50% Similarity=0.719 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~ 267 (489)
-++|+|+||+|||++|+.+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999983
No 341
>PRK10867 signal recognition particle protein; Provisional
Probab=97.21 E-value=0.014 Score=62.08 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=48.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhh----------------h----ccchHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------W----RGDSEKLIKVLFE 295 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~----------------~----~g~~~~~l~~lf~ 295 (489)
.++.-+++.||+|+||||++..+|..+ |..+..+++...... + .............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 345778999999999999888887754 566777766422111 0 0123334445556
Q ss_pred HHHhcCCcEEEEchhhhH
Q 011305 296 LARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 296 ~A~~~~p~VL~IDEiD~l 313 (489)
.++.....+|+||=.-.+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666666789999977544
No 342
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.21 E-value=0.00031 Score=65.40 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=28.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
+++.|||||||||+|+.+|+.++. ..++.+++..+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHH
Confidence 689999999999999999999985 55666666543
No 343
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.21 E-value=0.0061 Score=58.86 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=31.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
+.+++..+++.|+||+|||+++..++.+. +.+.++++..+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45667789999999999999999887643 67777777643
No 344
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.20 E-value=0.0015 Score=62.22 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=41.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------hh-------------ccchHHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KW-------------RGDSEKLIKVLFELAR 298 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~~-------------~g~~~~~l~~lf~~A~ 298 (489)
|+-++|.||+|+||||.+--+|..+ +..+-.+++..... .| ..+........++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4678999999999999998888866 44444444322210 00 0112334445555555
Q ss_pred hcCCcEEEEchhh
Q 011305 299 HHAPSTIFLDEID 311 (489)
Q Consensus 299 ~~~p~VL~IDEiD 311 (489)
.....+|+||=..
T Consensus 81 ~~~~D~vlIDT~G 93 (196)
T PF00448_consen 81 KKGYDLVLIDTAG 93 (196)
T ss_dssp HTTSSEEEEEE-S
T ss_pred hcCCCEEEEecCC
Confidence 5555799999764
No 345
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.20 E-value=0.0037 Score=62.10 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=30.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
+.+++..++++||||||||+++..++.+. |.+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 45667789999999999999999887643 5677777653
No 346
>PRK13949 shikimate kinase; Provisional
Probab=97.18 E-value=0.00034 Score=64.96 Aligned_cols=32 Identities=41% Similarity=0.599 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
+.++|.|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 46999999999999999999999999888755
No 347
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.17 E-value=0.01 Score=59.39 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+++.++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345778899999999999999998876 5566666554
No 348
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.17 E-value=0.0068 Score=70.21 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=77.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc--chh-hhh------------cc---------------chHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS--SVV-SKW------------RG---------------DSEKLIKV 292 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s--~l~-~~~------------~g---------------~~~~~l~~ 292 (489)
+-++++||+|.|||+++...+...+ ++.-++.. +-. ..+ .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 5689999999999999999988776 55544432 100 000 00 00112223
Q ss_pred HHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH-HHHhhccc
Q 011305 293 LFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEK 370 (489)
Q Consensus 293 lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~-al~rRf~~ 370 (489)
++..... ..|.+|+|||++.+... .....+..|+..+ .....+|| ++.....+.- .+.- -+.
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~~---------~~~~~l~~l~~~~-----~~~~~lv~-~sR~~~~~~~~~l~~-~~~ 175 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITNP---------EIHEAMRFFLRHQ-----PENLTLVV-LSRNLPPLGIANLRV-RDQ 175 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCCh---------HHHHHHHHHHHhC-----CCCeEEEE-EeCCCCCCchHhHHh-cCc
Confidence 3333322 56889999999887321 1122333344322 22334444 5544222221 1111 111
Q ss_pred ccccC----CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 371 RILVP----LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 371 ~i~~~----~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
.+.+. ..+.+|-.+++...+... ....++..+.+.|.|..
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWA 219 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChH
Confidence 23333 558888888887655322 12234566666677654
No 349
>PRK06217 hypothetical protein; Validated
Probab=97.17 E-value=0.00038 Score=65.26 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999999877654
No 350
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.15 E-value=0.0041 Score=59.20 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~ 264 (489)
.++.-++|+||.|+|||++.+.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3345799999999999999999994
No 351
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00055 Score=64.19 Aligned_cols=35 Identities=34% Similarity=0.693 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
.++|.||||+||||+|+.|++. .++..++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence 5899999999999999999999 4556666555543
No 352
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.14 E-value=0.0028 Score=63.76 Aligned_cols=63 Identities=27% Similarity=0.271 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----C-CcEEEEeccc
Q 011305 215 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASS 277 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~-~~~i~v~~s~ 277 (489)
+.+.+.+.+.+...+........+...+..++|.||+|+||||++..+|..+ + ..+..+++..
T Consensus 167 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 167 EDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred HHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3455555555544332111111123345678999999999999999998866 3 5666666544
No 353
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.13 E-value=0.00056 Score=68.35 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=43.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEe-ccchhhhhc-------cc------hHHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK----------TTFFNIS-ASSVVSKWR-------GD------SEKLIKVLFELAR 298 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~----------~~~i~v~-~s~l~~~~~-------g~------~~~~l~~lf~~A~ 298 (489)
.+++|.||+|+||||+.++++..+. .++..++ ..++...+. +. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 6899999999999999999999873 2222222 122221111 00 1112334666777
Q ss_pred hcCCcEEEEchh
Q 011305 299 HHAPSTIFLDEI 310 (489)
Q Consensus 299 ~~~p~VL~IDEi 310 (489)
...|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
No 354
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.12 E-value=0.00054 Score=69.52 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=46.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEec-cchhhh-------hccchHHHHHHHHHHHHhcCCcEEEEc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA-SSVVSK-------WRGDSEKLIKVLFELARHHAPSTIFLD 308 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~-s~l~~~-------~~g~~~~~l~~lf~~A~~~~p~VL~ID 308 (489)
..++++.||+|+||||+++++...+ +..++.+.- .++.-. ...........++..+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4689999999999999999999886 233443321 121100 001111145667788888999999999
Q ss_pred hh
Q 011305 309 EI 310 (489)
Q Consensus 309 Ei 310 (489)
|+
T Consensus 212 Ei 213 (299)
T TIGR02782 212 EV 213 (299)
T ss_pred cc
Confidence 99
No 355
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.12 E-value=0.0059 Score=60.58 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
..+...++|.||||+|||+++..++..+ +.++++++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 5566779999999999999999887764 667777765
No 356
>PRK14531 adenylate kinase; Provisional
Probab=97.11 E-value=0.0005 Score=64.47 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..++++||||+||||+++.+|+.+|.+.+ ++.++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHHH
Confidence 46999999999999999999999987654 4555543
No 357
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.09 E-value=0.00048 Score=61.31 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
+.+.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987765
No 358
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.09 E-value=0.00049 Score=61.99 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
++|.|+||+||||+|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876653
No 359
>PRK13948 shikimate kinase; Provisional
Probab=97.08 E-value=0.00062 Score=64.10 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=31.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.++.+++|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999998554
No 360
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.08 E-value=0.00048 Score=64.53 Aligned_cols=34 Identities=35% Similarity=0.629 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
|+|.||||+||||+++.+|+.++.+++ +..++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHH
Confidence 799999999999999999999987654 4445543
No 361
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.011 Score=62.09 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 215 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
+.+++.+.+.+...+..+..+ ...++.++|.||+|+||||++..+|..+ +..+..+++
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 556666666655444332211 1234679999999999999999999877 445555554
No 362
>PRK14530 adenylate kinase; Provisional
Probab=97.08 E-value=0.00056 Score=65.82 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
..++|.||||+||||+++.+|+.++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4699999999999999999999998776643
No 363
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.08 E-value=0.0016 Score=68.00 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=45.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEeccch----------------hhhhccchHHHHH---HHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKT-----TFFNISASSV----------------VSKWRGDSEKLIK---VLFELA 297 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~-----~~i~v~~s~l----------------~~~~~g~~~~~l~---~lf~~A 297 (489)
+.-.+|.||||+|||+|++.|++.... ..+.+-..+. .+.+.......++ .++..|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999997743 2222222121 1222223333333 333333
Q ss_pred Hh----cCCcEEEEchhhhHHhhh
Q 011305 298 RH----HAPSTIFLDEIDAIISQR 317 (489)
Q Consensus 298 ~~----~~p~VL~IDEiD~l~~~r 317 (489)
+. .+..+|||||+..+....
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHH
Confidence 32 245799999999987653
No 364
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.06 E-value=0.0011 Score=68.67 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=45.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEec-cchh---------hhhccchHHHHHHHHHHHHhcCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFL 307 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~-s~l~---------~~~~g~~~~~l~~lf~~A~~~~p~VL~I 307 (489)
...+++.||+|+||||+++++...+. ..++.+.- .++. ...+|.........+..+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 35689999999999999999998774 23333321 1211 0011211122445566677789999999
Q ss_pred chhh
Q 011305 308 DEID 311 (489)
Q Consensus 308 DEiD 311 (489)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9993
No 365
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.06 E-value=0.075 Score=56.65 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhh-------h---------c----cchHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK-------W---------R----GDSEKLIKVLFEL 296 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~-------~---------~----g~~~~~l~~lf~~ 296 (489)
++..+++.|++|+||||++..+|..+ |..+..+++...... + . .............
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45779999999999999988888764 566777776532110 0 0 0122333455555
Q ss_pred HHhcCCcEEEEchhhhH
Q 011305 297 ARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 297 A~~~~p~VL~IDEiD~l 313 (489)
+....+.+|+||=.-.+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 65666679999977543
No 366
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.05 E-value=0.0065 Score=57.09 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 011305 245 ILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~ 264 (489)
++|+||.|+|||++.|.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 367
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.04 E-value=0.004 Score=57.23 Aligned_cols=74 Identities=20% Similarity=0.129 Sum_probs=46.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhh--------hhcc-----chHHHHHHHHHHHHhcCCc
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVS--------KWRG-----DSEKLIKVLFELARHHAPS 303 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~--------~~~g-----~~~~~l~~lf~~A~~~~p~ 303 (489)
..++..+.|.||+|+|||||.+.++.... .--+.++..++.. ..++ ......+-.+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 45667899999999999999999998652 1112333322110 0010 0112233445566677899
Q ss_pred EEEEchhhh
Q 011305 304 TIFLDEIDA 312 (489)
Q Consensus 304 VL~IDEiD~ 312 (489)
+|++||-..
T Consensus 103 illlDEP~~ 111 (163)
T cd03216 103 LLILDEPTA 111 (163)
T ss_pred EEEEECCCc
Confidence 999999854
No 368
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.04 E-value=0.0021 Score=63.51 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~ 268 (489)
..+..++|.||+|+|||++++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34567999999999999999999998754
No 369
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.04 E-value=0.00054 Score=62.59 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+-+.|||||||||+|+.+|+.+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999874
No 370
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.04 E-value=0.0084 Score=57.37 Aligned_cols=118 Identities=24% Similarity=0.332 Sum_probs=74.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh---------------------------------h
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---------------------------------W 282 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~---------------------------------~ 282 (489)
.+.+.-+++.|+.|||||.+.+.++.-+ +....+++...-... .
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccC
Confidence 4555668999999999999999998744 444444432111000 0
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~ 362 (489)
.....+.++.+.+..+.+...|++||-+..++... +...+..++..+..+...+. +++ .|-+|+.+++
T Consensus 105 ~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~---------~~~~vl~fm~~~r~l~d~gK-vIi--lTvhp~~l~e 172 (235)
T COG2874 105 RRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD---------SEDAVLNFMTFLRKLSDLGK-VII--LTVHPSALDE 172 (235)
T ss_pred hHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc---------cHHHHHHHHHHHHHHHhCCC-EEE--EEeChhhcCH
Confidence 12344556677777777777999999998886542 12233445555554544443 433 3667888998
Q ss_pred HHHhhc
Q 011305 363 AMLRRL 368 (489)
Q Consensus 363 al~rRf 368 (489)
++.-|+
T Consensus 173 ~~~~ri 178 (235)
T COG2874 173 DVLTRI 178 (235)
T ss_pred HHHHHH
Confidence 887766
No 371
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.02 E-value=0.0075 Score=65.37 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=57.3
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc------c----------------------c
Q 011305 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------G----------------------D 285 (489)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------g----------------------~ 285 (489)
++..++..+|+.||||+|||+++-.++.+. |-+.++++..+-..... | .
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 346777889999999999999999998865 56777776544321110 0 1
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 286 SEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 286 ~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
.+..+..+.+......|.+|+||-+..+..
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 245566677777778899999999988754
No 372
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.02 E-value=0.0019 Score=63.60 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
|+|.|+||+||||+|+.+++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999987 466777765444
No 373
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.01 E-value=0.00056 Score=62.57 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+++.||+|+||||+|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999986654 44443
No 374
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.01 E-value=0.0042 Score=63.53 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=31.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+.+.+.-++|+||||||||+++-.+|... +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 45666778999999999999999998763 34678887654
No 375
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.01 E-value=0.0011 Score=69.22 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=45.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEecc-chh-----------hhhccchHHHHHHHHHHHHhcCCcEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK-----TTFFNISAS-SVV-----------SKWRGDSEKLIKVLFELARHHAPSTI 305 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~-----~~~i~v~~s-~l~-----------~~~~g~~~~~l~~lf~~A~~~~p~VL 305 (489)
..+|+.||+|+||||+++++.+.+. ..++.+.-. ++. ...+|............+....|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4689999999999999999988772 345544321 211 00112111234456667777899999
Q ss_pred EEchhh
Q 011305 306 FLDEID 311 (489)
Q Consensus 306 ~IDEiD 311 (489)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999993
No 376
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.00 E-value=0.0013 Score=61.88 Aligned_cols=71 Identities=27% Similarity=0.408 Sum_probs=45.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEecc-chhhh---hc----------cchHHHHHHHHHHHHhcCCc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-SVVSK---WR----------GDSEKLIKVLFELARHHAPS 303 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s-~l~~~---~~----------g~~~~~l~~lf~~A~~~~p~ 303 (489)
.....++|.||+|+||||++++++..+. ...+.+... ++... +. +........++..+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 3457899999999999999999998763 223322211 11100 00 11123355666677778899
Q ss_pred EEEEchh
Q 011305 304 TIFLDEI 310 (489)
Q Consensus 304 VL~IDEi 310 (489)
++++.|+
T Consensus 103 ~i~igEi 109 (186)
T cd01130 103 RIIVGEV 109 (186)
T ss_pred EEEEEcc
Confidence 9999999
No 377
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.00 E-value=0.00058 Score=63.33 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.+++|.|++|+||||+.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998655
No 378
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.99 E-value=0.0017 Score=66.80 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=47.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEe-ccchhh-h------------hccchHHHHHHHHHHHHhcCCcEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVS-K------------WRGDSEKLIKVLFELARHHAPSTI 305 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~-~s~l~~-~------------~~g~~~~~l~~lf~~A~~~~p~VL 305 (489)
..++++.|++|+||||+++++...+. ..++.+- ..++.- . ..+...-....++..+....|.+|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 47899999999999999999999873 3333331 112211 0 011122235677888888999999
Q ss_pred EEchhh
Q 011305 306 FLDEID 311 (489)
Q Consensus 306 ~IDEiD 311 (489)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999993
No 379
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.98 E-value=0.00079 Score=62.09 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
..++|.|++|+|||++++.+|+.++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999987543
No 380
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.98 E-value=0.0082 Score=63.90 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeccc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 277 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s~ 277 (489)
++.++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4678999999999999999887754 35666676654
No 381
>PLN02674 adenylate kinase
Probab=96.98 E-value=0.002 Score=63.49 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=30.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
...++|.||||+||+|+++.+|+.++. ..++..++...
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~--~his~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHHHH
Confidence 467999999999999999999999985 45566666543
No 382
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.98 E-value=0.0057 Score=62.26 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=31.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+...+.-++++||||+|||+++-.+|... +...++|+..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 35566778999999999999999998763 34788888655
No 383
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.98 E-value=0.0052 Score=62.66 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=46.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEe-ccchhhh---h---------ccchHHHHHHHHHHHHhcCCcE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVSK---W---------RGDSEKLIKVLFELARHHAPST 304 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~-~s~l~~~---~---------~g~~~~~l~~lf~~A~~~~p~V 304 (489)
....++++.||+|+||||++++++..+. ...+.+. ..++.-. . .+...-....++..+....|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 3457999999999999999999998773 2222221 1111100 0 0111223456777777889999
Q ss_pred EEEchhh
Q 011305 305 IFLDEID 311 (489)
Q Consensus 305 L~IDEiD 311 (489)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999994
No 384
>PRK06547 hypothetical protein; Provisional
Probab=96.97 E-value=0.00082 Score=62.69 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
++.-|++.|++|||||++++.+++.++.+++..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4467889999999999999999999988776543
No 385
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.97 E-value=0.0071 Score=57.50 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVA 263 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA 263 (489)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 386
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.97 E-value=0.0028 Score=57.45 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
++|.|+||+|||++|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999998 666777765444
No 387
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.97 E-value=0.00085 Score=65.47 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..++|.||||+||||+|+.+|+.++.+++. ..++..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is--~gdllr 42 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHIN--MGNILR 42 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEE--CChHHH
Confidence 459999999999999999999999876654 445543
No 388
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.96 E-value=0.0024 Score=68.66 Aligned_cols=184 Identities=23% Similarity=0.268 Sum_probs=96.1
Q ss_pred CCCCCCCchHHHHHHHHHhh-hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCC
Q 011305 177 KPLLPNFDSAETRALAESLC-RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGT 253 (489)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGt 253 (489)
+...|.+...+...+..... +.+...-...---.|.|.+.+|+.+.-++.--.. ....++ +...-++|+.|.|-+
T Consensus 268 ke~~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSv 345 (818)
T KOG0479|consen 268 KEAAPDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSV 345 (818)
T ss_pred ccccccCChhhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchH
Confidence 34456676666554433211 1111111111123789999999998865543221 112222 333457999999999
Q ss_pred cHHHHHHHHHHHhCCcEEEEec-cc---h---hhhhccchHHHHHH-HHHHHHhcCCcEEEEchhhhHHhhhcccchhhH
Q 011305 254 GKTMLAKAVATECKTTFFNISA-SS---V---VSKWRGDSEKLIKV-LFELARHHAPSTIFLDEIDAIISQRGEARSEHE 325 (489)
Q Consensus 254 GKT~lAralA~el~~~~i~v~~-s~---l---~~~~~g~~~~~l~~-lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~ 325 (489)
.||.|.|.+.+.....+-.... ++ | +..-....++.+.. ..-.|. .+|++|||+|.+..-
T Consensus 346 AKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLAD---RGVVCIDEFDKMsDi--------- 413 (818)
T KOG0479|consen 346 AKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLAD---RGVVCIDEFDKMSDI--------- 413 (818)
T ss_pred HHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEcc---CceEEehhcccccch---------
Confidence 9999999998865222111100 00 0 00001122333221 111122 379999999998422
Q ss_pred HHHHHHHHHHHHh------cCC-ccCCCcEEEEEEeCCCCc-------------ccHHHHhhcccccccC
Q 011305 326 ASRRLKTELLIQM------DGL-TQSDELVFVLAATNLPWE-------------LDAAMLRRLEKRILVP 375 (489)
Q Consensus 326 ~~~~i~~~LL~~l------dg~-~~~~~~viVIatTn~p~~-------------Ld~al~rRf~~~i~~~ 375 (489)
.+....+.+.+= -|+ ..-+.+.-|++++|..+. |+..+++||+..+.+-
T Consensus 414 -DRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~l 482 (818)
T KOG0479|consen 414 -DRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVL 482 (818)
T ss_pred -hHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEe
Confidence 122222222221 122 123445778999986642 7889999998755443
No 389
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.96 E-value=0.0051 Score=62.88 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=30.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+...+.-+.|+||||+|||+++..+|-.. +...++++..+
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 45666778999999999999998877422 45778887654
No 390
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.96 E-value=0.0012 Score=67.20 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=32.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
..+...|+|.|++|||||++++.+|+.+|.+++.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 566788999999999999999999999999998433
No 391
>PRK13946 shikimate kinase; Provisional
Probab=96.96 E-value=0.00071 Score=63.55 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
++.|+|.|++|||||++++.+|+.+|.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 367999999999999999999999999987655
No 392
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.96 E-value=0.00095 Score=62.10 Aligned_cols=34 Identities=26% Similarity=0.613 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
...|+|.|++|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999998876653
No 393
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.94 E-value=0.0056 Score=61.24 Aligned_cols=70 Identities=27% Similarity=0.286 Sum_probs=38.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh---hh-ccchHHHHHH----HHHHHHhcCCcEEEEchhhhH
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---KW-RGDSEKLIKV----LFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~---~~-~g~~~~~l~~----lf~~A~~~~p~VL~IDEiD~l 313 (489)
|+|+|-||+|||++|+.|+..+ +..+..++...+.- .| ....++.++. .+..+.... .|+++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~-~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKD-TIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccC-eEEEEeCCchH
Confidence 7899999999999999999976 56777777544431 12 1223444443 333333333 79999999776
Q ss_pred Hh
Q 011305 314 IS 315 (489)
Q Consensus 314 ~~ 315 (489)
-+
T Consensus 83 Kg 84 (270)
T PF08433_consen 83 KG 84 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 394
>PRK14528 adenylate kinase; Provisional
Probab=96.94 E-value=0.00084 Score=63.27 Aligned_cols=35 Identities=29% Similarity=0.579 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
+.+++.||||+||||+++.+++.++.+.+. ..++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 468999999999999999999999877654 44543
No 395
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.94 E-value=0.08 Score=52.96 Aligned_cols=89 Identities=22% Similarity=0.293 Sum_probs=55.7
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHH
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 289 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~ 289 (489)
+|+-.+++.+-+..+... +..|..+.||.|.+|+||++++|..|.-.+..++.+..+.-.+ ..+....
T Consensus 9 ~lVlf~~ai~hi~ri~Rv----------L~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV----------LSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHH----------HCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHH----------HcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 455556666666654332 1245678999999999999999999999999999887543211 1234455
Q ss_pred HHHHHHHHH-hcCCcEEEEchh
Q 011305 290 IKVLFELAR-HHAPSTIFLDEI 310 (489)
Q Consensus 290 l~~lf~~A~-~~~p~VL~IDEi 310 (489)
++.++..|- ..+|.+++|+|-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECC
T ss_pred HHHHHHHHhccCCCeEEEecCc
Confidence 666666655 455778887654
No 396
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.012 Score=62.29 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASS 277 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~ 277 (489)
+..++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3568899999999999999999754 44455555433
No 397
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.92 E-value=0.012 Score=60.22 Aligned_cols=61 Identities=25% Similarity=0.169 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHccccCc-hhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 215 ENAKRLLKEAVVMPIKYP-KYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~-~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
+.+++.+.+.+...+... ..+.....++.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 86 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 86 EELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred HHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 445556665555443211 1111112345678899999999999999999877 455555554
No 398
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.91 E-value=0.0068 Score=62.67 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=30.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+...+.-+.|+||||||||+++..+|-.. +..+++++...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 35666678899999999999999887432 35677777644
No 399
>PRK13764 ATPase; Provisional
Probab=96.90 E-value=0.0013 Score=72.37 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=41.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe-ccch-----hhhhccchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSV-----VSKWRGDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~-~s~l-----~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
..++|++|||||||||++++++..+. ..+..+. ..++ ...+.. ...........+....|.+|++||+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 47899999999999999999998874 2232331 1122 111110 00011222333346779999999984
No 400
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.90 E-value=0.0059 Score=56.45 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++-.++|+||+|||||++.|++|.-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4566779999999999999999999855
No 401
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0085 Score=62.43 Aligned_cols=100 Identities=23% Similarity=0.338 Sum_probs=69.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh--CCcEEEEeccchhhhhc------c--------chHHHHHHHHHHHHhcCC
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWR------G--------DSEKLIKVLFELARHHAP 302 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el--~~~~i~v~~s~l~~~~~------g--------~~~~~l~~lf~~A~~~~p 302 (489)
.-++.-+|+-|.||.|||||.-.++..+ ..++++|++.+-..... | -.+..+..+.......+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 4566778999999999999998888877 34799999876543321 1 134456778888888999
Q ss_pred cEEEEchhhhHHhhhc-ccchhhHHHHHHHHHHHHHh
Q 011305 303 STIFLDEIDAIISQRG-EARSEHEASRRLKTELLIQM 338 (489)
Q Consensus 303 ~VL~IDEiD~l~~~r~-~~~~~~~~~~~i~~~LL~~l 338 (489)
.+++||-|..+....- +....-...+....+|...-
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~A 206 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLA 206 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHH
Confidence 9999999999887642 22222223455555555543
No 402
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.88 E-value=0.012 Score=57.26 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
+..++.-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 35566789999999999999998887754 778877774
No 403
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.88 E-value=0.0012 Score=67.61 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=46.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe-ccchhhhh------ccchHHHHHHHHHHHHhcCCcEEEEch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVSKW------RGDSEKLIKVLFELARHHAPSTIFLDE 309 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~-~s~l~~~~------~g~~~~~l~~lf~~A~~~~p~VL~IDE 309 (489)
..++|+.|++|+||||+++++.... +..++.+- ..++.-.. .....-....++..+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4689999999999999999999876 23344332 22222110 011112355677778889999999999
Q ss_pred h
Q 011305 310 I 310 (489)
Q Consensus 310 i 310 (489)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 9
No 404
>PRK06696 uridine kinase; Validated
Probab=96.88 E-value=0.0025 Score=61.75 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
+.-|.+.|++|+||||+|+.|++.+ |.+++.++..++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4568899999999999999999998 6778877766653
No 405
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.87 E-value=0.001 Score=61.89 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.-+++.|||||||||+++.+++.+|... ++..++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 4688999999999999999999987654 4554443
No 406
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.87 E-value=0.0075 Score=56.50 Aligned_cols=73 Identities=22% Similarity=0.174 Sum_probs=43.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccch--hhhhc-cchHHHHHHHHHHHHhcCCcEEEEchhhh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSV--VSKWR-GDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l--~~~~~-g~~~~~l~~lf~~A~~~~p~VL~IDEiD~ 312 (489)
.++..+.|.||.|+|||||++.++.... .--+.++...+ ..... =.....-+-.+..+-...|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 4556789999999999999999998651 11122222111 00100 01112233344555567889999999854
No 407
>PRK05973 replicative DNA helicase; Provisional
Probab=96.86 E-value=0.011 Score=58.06 Aligned_cols=39 Identities=33% Similarity=0.359 Sum_probs=31.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
++.++..+++.|+||+|||+++-.++.+. |.++++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 46677789999999999999998887755 7777777654
No 408
>PRK02496 adk adenylate kinase; Provisional
Probab=96.84 E-value=0.001 Score=62.28 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.+++.||||+||||+++.+++.++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998765543
No 409
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.84 E-value=0.0033 Score=63.38 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.-+++.|+|||||||+|+.+++.+. .++.++..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 4688999999999999999999983 2345554444
No 410
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.83 E-value=0.0009 Score=57.88 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el 266 (489)
|+|.|+|||||||+|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 411
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.83 E-value=0.001 Score=63.73 Aligned_cols=34 Identities=32% Similarity=0.626 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
|++.||||+||||+|+.+|+.++.+.+ +..++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i--s~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI--STGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee--ehhHHHH
Confidence 789999999999999999999987655 4445543
No 412
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.83 E-value=0.0043 Score=67.95 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
++++..+|+.||+|||||++.|++|.-+
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5677889999999999999999999965
No 413
>PLN02200 adenylate kinase family protein
Probab=96.82 E-value=0.0013 Score=64.30 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
.+..+++.|||||||||+|+.+|+.+|.+ .++++++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 34578999999999999999999999864 5777777644
No 414
>PF13245 AAA_19: Part of AAA domain
Probab=96.82 E-value=0.002 Score=51.80 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHHh------CCcEEEEec
Q 011305 243 KGILLFGPPGTGKT-MLAKAVATEC------KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT-~lAralA~el------~~~~i~v~~ 275 (489)
.-+++.|||||||| ++++.++... +..++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 34667999999999 5566666555 344555543
No 415
>PTZ00035 Rad51 protein; Provisional
Probab=96.81 E-value=0.009 Score=61.70 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=30.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+...+.-+.|+||||+|||+++..++... +...++++...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 45666778999999999999999987533 34566777544
No 416
>PRK13808 adenylate kinase; Provisional
Probab=96.81 E-value=0.0069 Score=62.18 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
.|+|+||||+|||++++.|++.++.+. ++..+++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~--is~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQ--LSTGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--ecccHHHH
Confidence 489999999999999999999998744 45455543
No 417
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.80 E-value=0.0012 Score=63.53 Aligned_cols=34 Identities=29% Similarity=0.595 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.|+++||||+||||+++.+|+.++.+.+. ..++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence 48999999999999999999999865554 44444
No 418
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=96.79 E-value=0.014 Score=53.35 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHHhC----CcEEEEec
Q 011305 243 KGILLFGPPGTGKTM-LAKAVATECK----TTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~-lAralA~el~----~~~i~v~~ 275 (489)
+++++.||+|||||+ ++..+...+. ..++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 689999999999999 5555555443 33555544
No 419
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.79 E-value=0.003 Score=67.43 Aligned_cols=93 Identities=22% Similarity=0.148 Sum_probs=55.5
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec-c---chhhh
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA-S---SVVSK 281 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~-s---~l~~~ 281 (489)
.+++++.......+.+.+.+.. |..-+|++||+|+||||+..++.++++.+...|-. . +..-.
T Consensus 235 l~l~~Lg~~~~~~~~~~~~~~~-------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~ 301 (500)
T COG2804 235 LDLEKLGMSPFQLARLLRLLNR-------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLP 301 (500)
T ss_pred CCHHHhCCCHHHHHHHHHHHhC-------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecC
Confidence 4456666666666666665532 22347889999999999999999999655432221 1 11111
Q ss_pred hccch------HHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 282 WRGDS------EKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 282 ~~g~~------~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
.+.+. .-.....++......|.||++.||-
T Consensus 302 gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 302 GINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred CcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 11110 0011234445556789999999994
No 420
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.78 E-value=0.0077 Score=61.63 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=30.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh------C---CcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC------K---TTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el------~---~~~i~v~~s~ 277 (489)
++.+..-+.++||||+|||+++..++... + ...++++..+
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 45666778999999999999999988632 1 3567777655
No 421
>PRK14527 adenylate kinase; Provisional
Probab=96.78 E-value=0.0011 Score=62.52 Aligned_cols=37 Identities=30% Similarity=0.500 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.+.-+++.||||+||||+|+.+++.++...+ +..++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i--s~gd~~ 41 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKL--STGDIL 41 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCC--CccHHH
Confidence 3467999999999999999999999986544 344444
No 422
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.77 E-value=0.0043 Score=67.13 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=58.5
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEec-cchhh
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVS 280 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~-s~l~~ 280 (489)
..+++++.-.++..+.++..+.. +..-++++||+|+||||+..++.+++. ..++.+-- .++.-
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~-------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~ 284 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR-------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI 284 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec
Confidence 44677776667777777765532 223478999999999999998888774 33444421 11111
Q ss_pred hhccc------hHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 281 KWRGD------SEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 281 ~~~g~------~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
..+.+ ...........+....|.||++.|+-
T Consensus 285 ~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 285 EGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred CCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 11111 11123345556667889999999994
No 423
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.76 E-value=0.0059 Score=56.39 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=27.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
-+++.||||+|||++++.++..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 36899999999999999999876 5667777765
No 424
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.01 Score=53.87 Aligned_cols=74 Identities=27% Similarity=0.353 Sum_probs=45.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEeccchhh-------hhcc-----chHHHHHHHHHHHHhcCCcE
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVS-------KWRG-----DSEKLIKVLFELARHHAPST 304 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~--~i~v~~s~l~~-------~~~g-----~~~~~l~~lf~~A~~~~p~V 304 (489)
..++..+.|.||+|+|||+++++++..+... -+.++...+.. ...+ ......+-.+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 4566789999999999999999999876311 13333322110 0000 01112223345555567899
Q ss_pred EEEchhhh
Q 011305 305 IFLDEIDA 312 (489)
Q Consensus 305 L~IDEiD~ 312 (489)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999964
No 425
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.76 E-value=0.013 Score=54.42 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566789999999999999999999875
No 426
>PRK04040 adenylate kinase; Provisional
Probab=96.75 E-value=0.0016 Score=61.63 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--CCcEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC--KTTFF 271 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el--~~~~i 271 (489)
+..++++|+|||||||+++.+++.+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3578999999999999999999999 55543
No 427
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.75 E-value=0.03 Score=51.54 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=71.5
Q ss_pred EcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHH
Q 011305 248 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS 327 (489)
Q Consensus 248 ~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 327 (489)
.+.+||||||++.++++-++- +-.|.-.++.++ ...+.++.+.+........++|+|==......|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR---------- 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRER---------- 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHH----------
Confidence 578999999999999999873 333444455433 344556666666644455799998554443332
Q ss_pred HHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHh--------hcc--cccccCCCCHHHHHHHHHHhcCCC
Q 011305 328 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--------RLE--KRILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 328 ~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~r--------Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
+++.+.+-..-..+......+-+||-.-..+...+.+.+ |=+ ..|.....+...-..|++.++...
T Consensus 71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRF 146 (168)
T ss_pred HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhc
Confidence 122222222222222223345566555333332233333 322 223444446677777888877544
No 428
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.75 E-value=0.017 Score=62.60 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=31.4
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEecc
Q 011305 237 GLLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISAS 276 (489)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~lAralA~e----l~~~~i~v~~s 276 (489)
++.++++.+|+.||||||||++|..++.+ .|.+.++|+..
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 34667788999999999999999988543 25677777653
No 429
>PF13479 AAA_24: AAA domain
Probab=96.75 E-value=0.0085 Score=57.67 Aligned_cols=67 Identities=27% Similarity=0.293 Sum_probs=38.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec--cch-hhhh-----c-cchHHHHHHHHHHH--HhcCCcEEEEchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSV-VSKW-----R-GDSEKLIKVLFELA--RHHAPSTIFLDEI 310 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~--s~l-~~~~-----~-g~~~~~l~~lf~~A--~~~~p~VL~IDEi 310 (489)
+..++|||+||+|||++|..+ +.++ .++. +.. ...+ + =.+-..+...+... ......+|+||.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l-~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPL-FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeE-EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 357999999999999999888 3333 3332 210 0000 0 01222233333332 2345679999988
Q ss_pred hhH
Q 011305 311 DAI 313 (489)
Q Consensus 311 D~l 313 (489)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 775
No 430
>PRK10436 hypothetical protein; Provisional
Probab=96.74 E-value=0.004 Score=66.86 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=60.0
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe-ccchhh
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVS 280 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~-~s~l~~ 280 (489)
..+++++.-.+...+.+++.+.. +..-+|++||+|+||||+..++..+++ ..++.+- ..++.-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~-------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ-------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh-------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 34677887777777777776533 234588999999999999988877774 3344332 112111
Q ss_pred hh-----cc-chHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 281 KW-----RG-DSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 281 ~~-----~g-~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
.. ++ .........+..+....|.||+|.|+-
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 11 11 111234556666777899999999993
No 431
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.74 E-value=0.0048 Score=58.61 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=32.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeccchhhh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSK 281 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~~s~l~~~ 281 (489)
..|.-+++.|+||+|||+++..+..++ +..++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 345778999999999999999999998 788899998776544
No 432
>PRK14526 adenylate kinase; Provisional
Probab=96.73 E-value=0.0046 Score=59.59 Aligned_cols=34 Identities=32% Similarity=0.639 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.++|.||||+||||+++.+|+.++.+. ++..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence 488999999999999999999988654 4455554
No 433
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.72 E-value=0.021 Score=62.24 Aligned_cols=78 Identities=22% Similarity=0.184 Sum_probs=51.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhh--------------hc----------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------WR---------------- 283 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~--------------~~---------------- 283 (489)
+.+++..+|++|+||+|||+++..++.+. |.+.++++..+-... +.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 35667889999999999999999876532 567777765332211 00
Q ss_pred ------cchHHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 284 ------GDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 284 ------g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
.+.+..+..+.+.....+|..++||-+..+..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 01122344455555667889999999988754
No 434
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.0066 Score=56.16 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||.+.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4566789999999999999999999976
No 435
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.0071 Score=66.88 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+|+..+-|.||+|+||||+|..+-+-.
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5778899999999999999999998755
No 436
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.71 E-value=0.0075 Score=55.85 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
++..+.|.|+||+|||++++.++..+ +..+..++...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 34678999999999999999999987 445666766543
No 437
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.71 E-value=0.0025 Score=49.98 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=23.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCcEEEE
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC-KTTFFNI 273 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el-~~~~i~v 273 (489)
+.+.|+||+|||++++++++.+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 6789999999999999999986 2344433
No 438
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.71 E-value=0.006 Score=69.22 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=55.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---C--CcEEEEeccch----hhhhccchHHHHHHHHHHHH----------hcCCc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---K--TTFFNISASSV----VSKWRGDSEKLIKVLFELAR----------HHAPS 303 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~--~~~i~v~~s~l----~~~~~g~~~~~l~~lf~~A~----------~~~p~ 303 (489)
+.++|.|+||||||++++++...+ + .+++.+..+.- .....|.....++.++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468999999999999999997755 3 34443332211 11112222233444443210 12357
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~ 359 (489)
+|+|||+-.+. ..+...|+..+. .+..+++++-.+....
T Consensus 419 llIvDEaSMvd-------------~~~~~~Ll~~~~----~~~rlilvGD~~QLps 457 (720)
T TIGR01448 419 LLIVDESSMMD-------------TWLALSLLAALP----DHARLLLVGDTDQLPS 457 (720)
T ss_pred EEEEeccccCC-------------HHHHHHHHHhCC----CCCEEEEECccccccC
Confidence 99999996552 223455555432 3445666665555433
No 439
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.71 E-value=0.0047 Score=55.67 Aligned_cols=72 Identities=21% Similarity=0.318 Sum_probs=43.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEecc---chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS---SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~--~~i~v~~s---~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~ 312 (489)
..++..+.|.||+|+||||+++.++..... --+.++.. .+..... ....-+-.+..+....|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 456678999999999999999999987521 01111111 0000011 112223334556667889999999854
No 440
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.70 E-value=0.0044 Score=57.95 Aligned_cols=29 Identities=41% Similarity=0.714 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
++.++|.||+|+|||++++.|.++....|
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 46799999999999999999999886544
No 441
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.69 E-value=0.0029 Score=63.39 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=45.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEec-cch--------h-hhhccchHHHHHHHHHHHHhcCCcEEEEch
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKT----TFFNISA-SSV--------V-SKWRGDSEKLIKVLFELARHHAPSTIFLDE 309 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~----~~i~v~~-s~l--------~-~~~~g~~~~~l~~lf~~A~~~~p~VL~IDE 309 (489)
=||++||+||||||..-++-.+.+. +++.+-- -++ . ..-+|.-.......++.|....|.||++-|
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEec
Confidence 3788999999999999999988853 3333321 111 1 122344444445566777788899999998
Q ss_pred hh
Q 011305 310 ID 311 (489)
Q Consensus 310 iD 311 (489)
+-
T Consensus 207 mR 208 (353)
T COG2805 207 MR 208 (353)
T ss_pred cc
Confidence 84
No 442
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.69 E-value=0.029 Score=51.63 Aligned_cols=29 Identities=24% Similarity=0.147 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el---~~~~i~ 272 (489)
-+.+|+++|.|||++|-.+|-.. |..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 36788889999999999998766 544443
No 443
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.68 E-value=0.0032 Score=65.33 Aligned_cols=24 Identities=50% Similarity=0.632 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-+++.|.||||||.+|-.++.++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 357899999999999999999988
No 444
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.68 E-value=0.013 Score=54.72 Aligned_cols=78 Identities=26% Similarity=0.362 Sum_probs=44.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh-------------CCcEEEEeccchhh----hhc---cc-------------
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC-------------KTTFFNISASSVVS----KWR---GD------------- 285 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el-------------~~~~i~v~~s~l~~----~~~---g~------------- 285 (489)
+..+.-++|.||||+|||+++-.++..+ +.++++++...-.. .+. +.
T Consensus 29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecc
Confidence 4455668999999999999999998865 23567776532210 000 00
Q ss_pred ----------------hHHHHHHHHHHHHh-cCCcEEEEchhhhHHhh
Q 011305 286 ----------------SEKLIKVLFELARH-HAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 286 ----------------~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~ 316 (489)
....+..+.+.+.. ..|.+|+||.+..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 12233445555555 56899999999999875
No 445
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.0017 Score=65.78 Aligned_cols=38 Identities=32% Similarity=0.387 Sum_probs=33.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
++-++|.||++||||-+|-.+|++++.+++.++...+-
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvY 40 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVY 40 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhc
Confidence 35689999999999999999999999999998875553
No 446
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.67 E-value=0.0013 Score=60.84 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.++++|.|||||||+++.++ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9998877665
No 447
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.66 E-value=0.011 Score=61.07 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=30.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
++.+..-++++|+||+|||+++..+|-.. +.+.++++..+
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 35666678899999999999999887432 23678887655
No 448
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.047 Score=57.08 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+.+.+.+.+.+...+..+..+. ..+++.++|.||+|+||||++..+|..+ +.++..+++.
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 46677777777766444333222 2456779999999999999999999866 5556556654
No 449
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.65 E-value=0.013 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
++..+++||.|+|||++.++++-.+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999986543
No 450
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.64 E-value=0.0025 Score=60.20 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+++-++|.||+|+|||++++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45779999999999999999998875
No 451
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.64 E-value=0.002 Score=57.48 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=26.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
.++..++|.|+.|+|||+++|.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 455679999999999999999999999864
No 452
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.64 E-value=0.0014 Score=59.26 Aligned_cols=34 Identities=32% Similarity=0.558 Sum_probs=27.6
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 247 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 247 L~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
|.||||+|||++|+.||++++. ..++..++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHH
Confidence 6899999999999999999975 566666665443
No 453
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.63 E-value=0.015 Score=54.35 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=22.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
..++.-+.|.||.|+|||||.+++...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 455677899999999999999999743
No 454
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.63 E-value=0.0019 Score=66.72 Aligned_cols=70 Identities=24% Similarity=0.401 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEec-cchhhh--------h----ccchHHHHHHHHHHHHhcCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISA-SSVVSK--------W----RGDSEKLIKVLFELARHHAPSTI 305 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~-s~l~~~--------~----~g~~~~~l~~lf~~A~~~~p~VL 305 (489)
...++|+.||+|+||||++++++..+. ..++.+.- .++.-. + .+...-....++..+....|..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 457899999999999999999999873 23333211 122100 0 01112234567778888899999
Q ss_pred EEchh
Q 011305 306 FLDEI 310 (489)
Q Consensus 306 ~IDEi 310 (489)
++.|+
T Consensus 241 ivGEi 245 (344)
T PRK13851 241 LLGEM 245 (344)
T ss_pred EEEee
Confidence 99999
No 455
>PRK04182 cytidylate kinase; Provisional
Probab=96.62 E-value=0.0019 Score=59.55 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.|.|.|++|||||++++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999988764
No 456
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.62 E-value=0.0068 Score=63.54 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..++..++|.||||+|||++++.+++.+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34556799999999999999999999863
No 457
>PRK01184 hypothetical protein; Provisional
Probab=96.60 E-value=0.0019 Score=60.31 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
-++|+||||+||||+++ +++++|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788888877544
No 458
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.58 E-value=0.0027 Score=60.52 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el 266 (489)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777776655
No 459
>PRK14529 adenylate kinase; Provisional
Probab=96.58 E-value=0.0057 Score=59.43 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
.++|.||||+||||+++.+++.++.+.+ +..++...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr~ 37 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFRE 37 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhhh
Confidence 4889999999999999999999987654 44455433
No 460
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.57 E-value=0.014 Score=55.43 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEecc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 276 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s 276 (489)
.|+|+.|++|+|||++++.++..+ ...++.++..
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 489999999999999999988766 3456666653
No 461
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.57 E-value=0.003 Score=64.65 Aligned_cols=70 Identities=23% Similarity=0.437 Sum_probs=46.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe-ccchhh---h---hccchHHHHHHHHHHHHhcCCcEEEEc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVS---K---WRGDSEKLIKVLFELARHHAPSTIFLD 308 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~-~s~l~~---~---~~g~~~~~l~~lf~~A~~~~p~VL~ID 308 (489)
...++++.|++|+||||++++++... ...++.+. ..++.- . +.....-....++..+....|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 34789999999999999999999874 22333322 122210 0 001112235677888888999999999
Q ss_pred hh
Q 011305 309 EI 310 (489)
Q Consensus 309 Ei 310 (489)
|+
T Consensus 227 Ei 228 (319)
T PRK13894 227 EV 228 (319)
T ss_pred cc
Confidence 99
No 462
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.56 E-value=0.0029 Score=58.04 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
..|.|+|.||+||||+|+++.+.+ +.+.+.+++..+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 568899999999999999999987 7888888876654
No 463
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.55 E-value=0.024 Score=54.31 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
+.-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999974
No 464
>PLN02840 tRNA dimethylallyltransferase
Probab=96.55 E-value=0.0042 Score=65.55 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..++|.||+|+|||+++..+|++++.+++..+...+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 458899999999999999999999988877765433
No 465
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.54 E-value=0.0023 Score=58.55 Aligned_cols=29 Identities=38% Similarity=0.610 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
-|.++|++|+|||++|+.+++.++.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 37899999999999999999999988654
No 466
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.54 E-value=0.003 Score=58.56 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.++..++|.|++|+||||+++.+++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4557899999999999999999999885
No 467
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.0064 Score=59.49 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++--|-|.||+|||||||.+.+|.-.
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455668899999999999999999854
No 468
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.53 E-value=0.017 Score=65.52 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=51.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEeccchhh-hh---------------ccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVVS-KW---------------RGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~e---l~~~~i~v~~s~l~~-~~---------------~g~~~~~l~~lf~~A~ 298 (489)
+++++..++++||||||||+|+..++.. .|...++++..+-.. .+ ....+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4566778999999999999999765543 367777777654222 00 0112233333333344
Q ss_pred hcCCcEEEEchhhhHHh
Q 011305 299 HHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~ 315 (489)
...+.+|+||-+..+.+
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 55789999999999986
No 469
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.53 E-value=0.0064 Score=62.50 Aligned_cols=37 Identities=30% Similarity=0.278 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
+.+.|.|+||+|||||++.++..++.+++.-.+.+..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 5799999999999999999999999888655544443
No 470
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.52 E-value=0.0061 Score=67.27 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=56.8
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEecc-chhhh
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISAS-SVVSK 281 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s-~l~~~ 281 (489)
.+++++.-.+...+.+++.+.. +...+|++||+|+||||+..++.+.++ .+++.+--. ++.-.
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~-------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~ 359 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK-------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLP 359 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh-------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCC
Confidence 3456666566666666655432 224578999999999999998888774 234433211 11100
Q ss_pred h-----c-cchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 282 W-----R-GDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 282 ~-----~-g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
. + ..........+..+....|.||++.|+-
T Consensus 360 ~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 360 GINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 0 0 0111224455666777899999999994
No 471
>PLN02459 probable adenylate kinase
Probab=96.51 E-value=0.0086 Score=59.44 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
..++|.||||+||||+++.+|+.++.+ .++..++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~--~is~gdll 64 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVP--HIATGDLV 64 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc--EEeCcHHH
Confidence 358889999999999999999999864 45555554
No 472
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.51 E-value=0.0022 Score=58.66 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
|.|+|+||||||||++++++. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999999 887663
No 473
>PRK08233 hypothetical protein; Provisional
Probab=96.51 E-value=0.0029 Score=58.52 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-CcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK-TTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~-~~~i~v~~ 275 (489)
.-|.+.|+||+||||+|+.++..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4578899999999999999999985 44554443
No 474
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.50 E-value=0.037 Score=56.49 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=64.8
Q ss_pred CCcEEEEchhhhHHhhhcccchh----hHHHHHHHHHHHHHhcCCccCCCcEEE--EEEeCC---CC--cccHHHHhhcc
Q 011305 301 APSTIFLDEIDAIISQRGEARSE----HEASRRLKTELLIQMDGLTQSDELVFV--LAATNL---PW--ELDAAMLRRLE 369 (489)
Q Consensus 301 ~p~VL~IDEiD~l~~~r~~~~~~----~~~~~~i~~~LL~~ldg~~~~~~~viV--IatTn~---p~--~Ld~al~rRf~ 369 (489)
.|.++-||++..+.........+ +...=.+...|+..+.+-..-..+.+| +++|.. +. .++.++..+-.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 46788899999999874332111 111123455666665544332333433 445422 22 35555544321
Q ss_pred ---------------------cccccCCCCHHHHHHHHHHhcCCCCCCCCC---CHHHHHHHhcCCcHHHHH
Q 011305 370 ---------------------KRILVPLPDTEARRAMFESLLPSQTGEESL---PYDLLVERTEGYSGSDIR 417 (489)
Q Consensus 370 ---------------------~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~---dl~~La~~t~G~sg~Di~ 417 (489)
..+.++..+.+|-..+++.+....-+.... ...+--..+.|.+++++.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 257888889999999999988766554321 122222234456777664
No 475
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.50 E-value=0.043 Score=58.31 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh---------------h-hc----cchHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---------------K-WR----GDSEKLIKVLFELA 297 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~---------------~-~~----g~~~~~l~~lf~~A 297 (489)
++.-++|.|++|+||||++..+|..+ |..+..+++..... . +. .+........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999877 66666666633210 0 00 01122333445555
Q ss_pred HhcCCcEEEEchhhh
Q 011305 298 RHHAPSTIFLDEIDA 312 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~ 312 (489)
+.....+|+||=...
T Consensus 179 ~~~~~DvViIDTaGr 193 (429)
T TIGR01425 179 KKENFDIIIVDTSGR 193 (429)
T ss_pred HhCCCCEEEEECCCC
Confidence 555568999997744
No 476
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.50 E-value=0.027 Score=66.37 Aligned_cols=74 Identities=12% Similarity=0.264 Sum_probs=50.0
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC--cccHHHHhhcccccccCCCCHHH
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTEA 381 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~--~Ld~al~rRf~~~i~~~~Pd~~e 381 (489)
||+|||+..|..... +.+...+..... ..+.-+|-+|.+|.+|+ .+...++.-|...|.|..-+..+
T Consensus 1143 VVIIDE~AdLm~~~~---------kevE~lI~rLAq--kGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~D 1211 (1355)
T PRK10263 1143 VVLVDEFADLMMTVG---------KKVEELIARLAQ--KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 1211 (1355)
T ss_pred EEEEcChHHHHhhhh---------HHHHHHHHHHHH--HhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHH
Confidence 899999988764311 112121212211 22445688899999996 47777888999999999998888
Q ss_pred HHHHHHH
Q 011305 382 RRAMFES 388 (489)
Q Consensus 382 R~~IL~~ 388 (489)
-..||-.
T Consensus 1212 SrtILd~ 1218 (1355)
T PRK10263 1212 SRTILDQ 1218 (1355)
T ss_pred HHHhcCC
Confidence 8777754
No 477
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.46 E-value=0.0066 Score=64.09 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+.|.|.|++|||||||+++||+.+|.+.+.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 679999999999999999999999887654
No 478
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.01 Score=55.17 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=34.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
..+..+.|+|.+|+||||+|.++.+.+ |...+.+++..+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 345678999999999999999999987 8899999886654
No 479
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.43 E-value=0.026 Score=54.79 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~ 264 (489)
+...++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999999988
No 480
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.42 E-value=0.065 Score=52.32 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 011305 245 ILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~e 265 (489)
.+|.||||+|||+++-.+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999874
No 481
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.42 E-value=0.0069 Score=58.60 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=31.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
+..++..+++.||||+|||+++..++.+. +.+.++++..+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 46677889999999999999999876533 66777777644
No 482
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.42 E-value=0.004 Score=72.97 Aligned_cols=141 Identities=20% Similarity=0.260 Sum_probs=80.7
Q ss_pred CCCCceEEEEcCCCCcHHHHH-HHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhc---------------CC
Q 011305 239 LSPWKGILLFGPPGTGKTMLA-KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH---------------AP 302 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lA-ralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~---------------~p 302 (489)
....++++++||||+|||++. -++-.++-..++.+|-+.-. .++..+.. ++.-..+ +-
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~-Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSV-LERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHH-HHhhceeeccCCeEEEccCcchhh
Confidence 455689999999999999964 56666777777777754321 11112222 2211111 11
Q ss_pred cEEEEchhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCcc-------CCCcEEEEEEeCCCCc-----ccHHHHhhcc
Q 011305 303 STIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPWE-----LDAAMLRRLE 369 (489)
Q Consensus 303 ~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~LL~~ldg~~~-------~~~~viVIatTn~p~~-----Ld~al~rRf~ 369 (489)
.|||.|||+ |...+...... --..+.+ .+-+|+.. .-.++++.+++|.+.. ....+.++-
T Consensus 1565 lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l-----~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~- 1637 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFEYYPPTVIVFLRPL-----VERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP- 1637 (3164)
T ss_pred eEEEeeccC-CccccccCCCceEEeeHHH-----HHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-
Confidence 399999998 44333221110 0011111 11122322 1245888999998754 334555443
Q ss_pred cccccCCCCHHHHHHHHHHhcCC
Q 011305 370 KRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 370 ~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
..+.+..|.-.....|.+.++..
T Consensus 1638 v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1638 VFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred eEEEecCcchhhHHHHHHHHHHH
Confidence 56778899999999998877644
No 483
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.41 E-value=0.0089 Score=61.49 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=45.5
Q ss_pred Cc-cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEe
Q 011305 208 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 274 (489)
Q Consensus 208 ~~-dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~ 274 (489)
|+ ++.|+++...++.+.+...-.. +....+-++|.||+|+|||++++.+-+-+ ..+++.+.
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~ 121 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQG------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLK 121 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhc------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEec
Confidence 44 8999999999998877553321 22334678999999999999999999877 34555553
No 484
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.40 E-value=0.021 Score=52.60 Aligned_cols=28 Identities=39% Similarity=0.632 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||++.++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566789999999999999999999875
No 485
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.40 E-value=0.035 Score=51.36 Aligned_cols=28 Identities=29% Similarity=0.612 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||+|.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3556779999999999999999999865
No 486
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.38 E-value=0.0031 Score=60.45 Aligned_cols=24 Identities=50% Similarity=0.670 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-+.+.||+|||||++|-+.|.++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999766
No 487
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.37 E-value=0.047 Score=59.52 Aligned_cols=78 Identities=21% Similarity=0.206 Sum_probs=52.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc----------------------------cch
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----------------------------GDS 286 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~----------------------------g~~ 286 (489)
+.+.+..++++||||+|||+++..++.+. |.+.++++..+-..... ...
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 35666789999999999999999988654 67777776533211100 011
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 287 EKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 287 ~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
...+..+.......++.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 23334444455566789999999988864
No 488
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.37 E-value=0.052 Score=58.98 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
...+..+.|.||+|+||||++..++..+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445778999999999999999998754
No 489
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.34 E-value=0.0035 Score=58.85 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
..++|.||+|+||||+++.++...+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 46899999999999999999998876543
No 490
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.34 E-value=0.026 Score=56.07 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=60.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccchh---------hhhccc---------------
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV---------SKWRGD--------------- 285 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~l~---------~~~~g~--------------- 285 (489)
...+.-.=|+||||+|||.++-.+|-.. +..+++++...-+ ..+.-+
T Consensus 35 i~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 35 IPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCC
Confidence 3444445599999999999999888654 3457888764311 111100
Q ss_pred ---hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 286 ---SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 286 ---~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
....+..+.......+-.+|+||-+-.++.....+..+.......+..++..+..+....+ +.||.|
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~-iaVvvT 184 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYN-IAVVVT 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCC-ceEEee
Confidence 1111222222223345579999999998865322111122223455556555555544333 444434
No 491
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.33 E-value=0.02 Score=59.70 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+..+++.||.|||||++.+++...+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 357899999999999999999998873
No 492
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.33 E-value=0.0058 Score=60.51 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=32.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
+.+..+.+|++|+||||||+++..++.+. |.+.++|+..+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 45677889999999999999999988765 67788887544
No 493
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.29 E-value=0.038 Score=51.48 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+||||+++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566789999999999999999999865
No 494
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.28 E-value=0.0035 Score=63.11 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=29.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+++.||+|+|||++|..+|++++..++.++.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 6899999999999999999999998887766444
No 495
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.27 E-value=0.0031 Score=64.21 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.-+++.||+|||||++|..+|++++.+++..+.-.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Q 39 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQ 39 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccc
Confidence 56899999999999999999999998877666533
No 496
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.26 E-value=0.004 Score=57.81 Aligned_cols=23 Identities=52% Similarity=0.804 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 497
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.24 E-value=0.012 Score=55.25 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
|.|+|.+|||||++++.+++..+.+++ ++.++...
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~ 36 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQ 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHH
Confidence 679999999999999999998666654 55555433
No 498
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.23 E-value=0.007 Score=57.77 Aligned_cols=38 Identities=26% Similarity=0.208 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC-CcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK-TTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~-~~~i~v~~s~l 278 (489)
.+.-|.|.|++||||||+++.|++.++ ..+..++..++
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 346789999999999999999999984 34555555443
No 499
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.23 E-value=0.016 Score=66.09 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=41.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh----hhccchHHHHHHHHHH-HH----hcCCcEEEEchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRGDSEKLIKVLFEL-AR----HHAPSTIFLDEI 310 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~----~~~g~~~~~l~~lf~~-A~----~~~p~VL~IDEi 310 (489)
+-++|.|+||||||++++++...+ |..++.+..+.... ...|.....+..+... .. .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 567899999999999999997654 66666554433221 1112211222332111 11 123479999999
Q ss_pred hhH
Q 011305 311 DAI 313 (489)
Q Consensus 311 D~l 313 (489)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 655
No 500
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.23 E-value=0.0072 Score=56.68 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.-++|.||+|+||||+++++-...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568899999999999999998876
Done!