Query 011305
Match_columns 489
No_of_seqs 380 out of 3191
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:24:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2.5E-47 8.5E-52 394.7 22.6 257 196-471 135-395 (405)
2 4b4t_H 26S protease regulatory 100.0 9E-46 3.1E-50 387.6 23.8 262 200-480 200-467 (467)
3 4b4t_M 26S protease regulatory 100.0 1.2E-45 4.1E-50 387.0 20.4 255 199-472 171-429 (434)
4 4b4t_I 26S protease regulatory 100.0 1.4E-45 4.9E-50 382.8 19.5 253 199-470 172-428 (437)
5 4b4t_L 26S protease subunit RP 100.0 2.7E-45 9.2E-50 384.6 19.0 263 198-481 170-436 (437)
6 3cf2_A TER ATPase, transitiona 100.0 5.2E-46 1.8E-50 414.7 9.1 287 199-486 467-765 (806)
7 4b4t_K 26S protease regulatory 100.0 2.3E-43 7.8E-48 369.4 25.0 252 200-470 163-420 (428)
8 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.1E-42 3.7E-47 353.4 26.9 284 200-486 3-321 (322)
9 3eie_A Vacuolar protein sortin 100.0 2.3E-42 7.9E-47 350.4 24.1 286 198-486 7-320 (322)
10 2qp9_X Vacuolar protein sortin 100.0 2.5E-41 8.4E-46 347.8 24.4 293 191-486 33-353 (355)
11 2zan_A Vacuolar protein sortin 100.0 1.4E-40 4.9E-45 351.9 19.4 293 191-486 116-443 (444)
12 3cf0_A Transitional endoplasmi 100.0 1.3E-39 4.6E-44 327.3 22.8 286 197-483 3-300 (301)
13 3cf2_A TER ATPase, transitiona 100.0 2E-40 6.8E-45 369.8 16.5 265 202-470 197-464 (806)
14 3d8b_A Fidgetin-like protein 1 100.0 6.9E-38 2.4E-42 322.2 24.1 288 191-486 66-356 (357)
15 3b9p_A CG5977-PA, isoform A; A 100.0 5.8E-38 2E-42 313.0 22.2 290 191-488 3-296 (297)
16 3vfd_A Spastin; ATPase, microt 100.0 1.8E-36 6.3E-41 314.8 22.8 287 193-487 99-388 (389)
17 2x8a_A Nuclear valosin-contain 100.0 2.5E-36 8.5E-41 299.9 20.6 261 202-472 3-271 (274)
18 3h4m_A Proteasome-activating n 100.0 5.2E-34 1.8E-38 282.5 23.6 268 201-487 9-283 (285)
19 3hu3_A Transitional endoplasmi 100.0 6E-35 2.1E-39 311.9 16.0 280 204-487 199-484 (489)
20 2ce7_A Cell division protein F 100.0 2.3E-32 7.9E-37 290.3 25.0 261 203-483 10-281 (476)
21 1lv7_A FTSH; alpha/beta domain 100.0 3.8E-32 1.3E-36 265.8 24.1 247 201-467 4-254 (257)
22 1ypw_A Transitional endoplasmi 100.0 2.9E-35 9.7E-40 331.8 -2.2 285 200-485 468-764 (806)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 4.7E-32 1.6E-36 264.5 15.8 247 204-470 1-254 (262)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 1.7E-30 5.7E-35 277.5 21.4 260 204-483 26-296 (499)
25 1ixz_A ATP-dependent metallopr 100.0 8.5E-30 2.9E-34 248.7 23.1 244 199-462 6-253 (254)
26 2r62_A Cell division protease 100.0 7.4E-33 2.5E-37 272.1 -1.6 253 201-472 3-260 (268)
27 1iy2_A ATP-dependent metallopr 100.0 2.2E-28 7.7E-33 242.2 25.3 243 201-463 32-278 (278)
28 1ypw_A Transitional endoplasmi 99.9 8.8E-28 3E-32 270.9 17.6 265 202-470 197-464 (806)
29 3t15_A Ribulose bisphosphate c 99.9 8.4E-26 2.9E-30 226.1 12.2 174 239-418 33-222 (293)
30 3syl_A Protein CBBX; photosynt 99.9 6.8E-22 2.3E-26 197.4 14.0 213 210-433 32-268 (309)
31 2c9o_A RUVB-like 1; hexameric 99.8 9.5E-24 3.3E-28 223.7 -5.6 202 204-422 32-262 (456)
32 3uk6_A RUVB-like 2; hexameric 99.8 2.9E-20 9.9E-25 190.1 18.4 221 204-466 39-331 (368)
33 1ofh_A ATP-dependent HSL prote 99.8 2.1E-20 7.2E-25 185.9 15.1 245 209-466 15-300 (310)
34 3pfi_A Holliday junction ATP-d 99.8 1.8E-19 6.1E-24 182.4 21.3 199 199-426 19-233 (338)
35 3m6a_A ATP-dependent protease 99.8 3.8E-20 1.3E-24 200.1 8.8 230 208-466 80-342 (543)
36 1d2n_A N-ethylmaleimide-sensit 99.8 2.4E-19 8.4E-24 176.4 13.8 195 208-411 32-229 (272)
37 3hws_A ATP-dependent CLP prote 99.8 4.6E-19 1.6E-23 181.9 15.2 220 210-429 16-324 (363)
38 1hqc_A RUVB; extended AAA-ATPa 99.8 3.4E-18 1.2E-22 171.5 16.4 196 202-425 5-216 (324)
39 2chg_A Replication factor C sm 99.8 3.6E-17 1.2E-21 153.0 21.0 204 201-463 9-224 (226)
40 1g41_A Heat shock protein HSLU 99.8 1.9E-17 6.5E-22 173.8 19.6 177 209-387 15-346 (444)
41 1l8q_A Chromosomal replication 99.8 2.3E-17 7.8E-22 166.3 18.5 198 203-426 5-214 (324)
42 2z4s_A Chromosomal replication 99.7 3.6E-17 1.2E-21 172.4 20.6 222 203-467 99-334 (440)
43 3pvs_A Replication-associated 99.7 2.1E-17 7.2E-22 174.5 18.7 215 201-470 18-249 (447)
44 3u61_B DNA polymerase accessor 99.7 6.8E-18 2.3E-22 169.9 13.8 157 199-390 16-178 (324)
45 1njg_A DNA polymerase III subu 99.7 9.8E-18 3.3E-22 158.5 13.4 207 200-463 14-249 (250)
46 3bos_A Putative DNA replicatio 99.7 7.2E-17 2.4E-21 153.7 19.0 207 204-463 23-241 (242)
47 4fcw_A Chaperone protein CLPB; 99.7 1.8E-17 6E-22 165.3 14.1 208 209-432 17-283 (311)
48 1um8_A ATP-dependent CLP prote 99.7 7.5E-18 2.6E-22 173.6 11.7 243 210-464 22-364 (376)
49 2v1u_A Cell division control p 99.7 1.8E-16 6.3E-21 161.7 21.8 226 205-466 15-277 (387)
50 1jbk_A CLPB protein; beta barr 99.7 6.3E-18 2.2E-22 154.5 9.7 162 202-386 15-194 (195)
51 1sxj_D Activator 1 41 kDa subu 99.7 2.8E-16 9.7E-21 159.0 17.8 216 198-466 26-264 (353)
52 1sxj_A Activator 1 95 kDa subu 99.7 5.8E-17 2E-21 174.2 13.4 207 197-422 27-251 (516)
53 2r44_A Uncharacterized protein 99.7 1.3E-16 4.4E-21 161.2 14.6 155 207-393 25-201 (331)
54 3pxg_A Negative regulator of g 99.7 5.8E-17 2E-21 172.2 12.6 191 196-424 167-382 (468)
55 2qby_B CDC6 homolog 3, cell di 99.7 9.2E-16 3.1E-20 157.0 20.5 214 208-466 19-271 (384)
56 1g8p_A Magnesium-chelatase 38 99.7 3.4E-16 1.2E-20 158.4 16.4 160 203-389 18-231 (350)
57 2chq_A Replication factor C sm 99.7 2.3E-16 7.8E-21 157.1 14.5 181 199-410 7-195 (319)
58 3pxi_A Negative regulator of g 99.7 3E-16 1E-20 176.0 15.2 203 209-431 491-728 (758)
59 1iqp_A RFCS; clamp loader, ext 99.7 7E-16 2.4E-20 154.1 16.3 194 198-423 14-215 (327)
60 1r6b_X CLPA protein; AAA+, N-t 99.7 4.7E-16 1.6E-20 174.3 16.6 227 204-466 181-434 (758)
61 2p65_A Hypothetical protein PF 99.7 1.5E-16 5E-21 145.3 9.6 152 205-378 18-187 (187)
62 2qby_A CDC6 homolog 1, cell di 99.7 3.5E-15 1.2E-19 151.9 20.8 225 204-466 15-273 (386)
63 1jr3_A DNA polymerase III subu 99.7 7.4E-16 2.5E-20 157.1 15.7 190 200-424 7-225 (373)
64 1r6b_X CLPA protein; AAA+, N-t 99.7 3.9E-16 1.3E-20 174.9 14.5 206 209-432 458-720 (758)
65 1sxj_B Activator 1 37 kDa subu 99.7 1.2E-15 3.9E-20 152.3 16.3 186 201-422 13-211 (323)
66 3pxi_A Negative regulator of g 99.7 2.8E-16 9.5E-21 176.3 13.0 192 196-425 167-383 (758)
67 1fnn_A CDC6P, cell division co 99.7 5.8E-15 2E-19 151.0 21.5 225 205-468 13-277 (389)
68 1in4_A RUVB, holliday junction 99.7 2.3E-14 7.8E-19 145.5 25.3 220 200-466 16-251 (334)
69 1qvr_A CLPB protein; coiled co 99.6 3.3E-16 1.1E-20 177.8 9.3 207 196-425 157-390 (854)
70 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 2.6E-15 9E-20 160.3 15.3 155 209-391 22-197 (500)
71 2bjv_A PSP operon transcriptio 99.6 3.2E-15 1.1E-19 146.2 14.3 159 206-390 3-194 (265)
72 3te6_A Regulatory protein SIR3 99.6 1.7E-15 5.9E-20 152.7 12.0 159 211-392 22-213 (318)
73 1sxj_E Activator 1 40 kDa subu 99.6 5.4E-15 1.8E-19 150.1 13.4 191 198-421 3-238 (354)
74 1qvr_A CLPB protein; coiled co 99.6 6.2E-15 2.1E-19 167.4 14.5 207 208-432 557-824 (854)
75 1ojl_A Transcriptional regulat 99.6 5.6E-15 1.9E-19 148.3 11.3 155 209-390 2-190 (304)
76 1sxj_C Activator 1 40 kDa subu 99.6 1.6E-13 5.5E-18 139.2 21.1 161 199-394 15-186 (340)
77 3n70_A Transport activator; si 99.5 1.9E-14 6.5E-19 128.4 9.5 124 210-369 2-135 (145)
78 3f9v_A Minichromosome maintena 99.5 3.1E-15 1E-19 163.3 3.7 166 209-393 295-493 (595)
79 3co5_A Putative two-component 99.5 6.8E-15 2.3E-19 131.1 5.2 131 210-376 5-141 (143)
80 1a5t_A Delta prime, HOLB; zinc 99.4 1E-12 3.5E-17 133.3 14.2 164 213-411 6-197 (334)
81 1w5s_A Origin recognition comp 99.4 1.4E-11 4.8E-16 126.9 18.9 208 206-427 19-273 (412)
82 3k1j_A LON protease, ATP-depen 99.4 2.5E-12 8.6E-17 140.6 12.8 53 201-267 33-85 (604)
83 2gno_A DNA polymerase III, gam 99.3 9.8E-12 3.3E-16 124.8 14.0 142 213-390 1-152 (305)
84 3cmw_A Protein RECA, recombina 99.3 4E-12 1.4E-16 151.0 9.4 152 204-357 1015-1218(1706)
85 3vlf_B 26S protease regulatory 99.2 2.7E-11 9.3E-16 99.1 7.8 85 378-480 2-88 (88)
86 1ny5_A Transcriptional regulat 99.2 5.8E-11 2E-15 122.9 10.5 216 208-463 136-385 (387)
87 3ec2_A DNA replication protein 99.2 4.4E-11 1.5E-15 109.8 7.7 101 202-313 3-112 (180)
88 3aji_B S6C, proteasome (prosom 99.1 5.4E-11 1.8E-15 96.1 5.8 81 378-476 2-82 (83)
89 2krk_A 26S protease regulatory 99.1 7.7E-11 2.6E-15 96.1 6.3 78 373-468 7-84 (86)
90 3kw6_A 26S protease regulatory 99.1 1.3E-10 4.4E-15 92.7 7.0 75 375-467 1-75 (78)
91 4akg_A Glutathione S-transfera 99.1 3.8E-10 1.3E-14 139.5 13.5 140 241-392 1266-1433(2695)
92 2kjq_A DNAA-related protein; s 99.0 4.9E-10 1.7E-14 100.5 8.5 107 241-376 35-147 (149)
93 3dzd_A Transcriptional regulat 99.0 2.7E-09 9.3E-14 109.7 13.9 198 209-440 129-359 (368)
94 2fna_A Conserved hypothetical 98.9 1.3E-08 4.4E-13 102.0 13.5 187 204-421 8-251 (357)
95 2qen_A Walker-type ATPase; unk 98.9 3.9E-08 1.3E-12 98.3 16.5 190 204-420 7-246 (350)
96 2w58_A DNAI, primosome compone 98.9 2.3E-09 7.8E-14 99.9 6.3 101 204-314 20-128 (202)
97 3f8t_A Predicted ATPase involv 98.8 3.4E-09 1.2E-13 111.2 7.4 145 211-380 215-384 (506)
98 2r2a_A Uncharacterized protein 98.8 5.8E-09 2E-13 98.2 5.9 128 243-381 6-157 (199)
99 2dzn_B 26S protease regulatory 98.7 4.9E-09 1.7E-13 84.4 2.7 79 380-476 1-81 (82)
100 2vhj_A Ntpase P4, P4; non- hyd 98.6 1.1E-08 3.8E-13 102.7 3.4 120 239-363 120-241 (331)
101 2qgz_A Helicase loader, putati 98.6 4.5E-08 1.5E-12 98.1 7.7 99 205-314 120-227 (308)
102 4akg_A Glutathione S-transfera 98.6 2.6E-07 8.8E-12 114.6 13.6 132 242-387 645-790 (2695)
103 1tue_A Replication protein E1; 98.5 7.3E-08 2.5E-12 90.7 6.1 110 241-377 57-179 (212)
104 1jr3_D DNA polymerase III, del 98.3 4.7E-06 1.6E-10 84.0 13.8 148 242-410 18-176 (343)
105 3cmu_A Protein RECA, recombina 98.3 1.1E-06 3.6E-11 106.2 9.7 117 239-357 1424-1563(2050)
106 3vkg_A Dynein heavy chain, cyt 98.2 1.9E-06 6.3E-11 107.8 9.8 137 242-390 1304-1469(3245)
107 1u0j_A DNA replication protein 98.2 1.7E-06 5.8E-11 84.7 7.2 29 240-268 102-130 (267)
108 3vkg_A Dynein heavy chain, cyt 98.2 6.2E-06 2.1E-10 103.2 13.4 136 243-388 605-751 (3245)
109 1ye8_A Protein THEP1, hypothet 98.2 1.2E-05 4.2E-10 73.8 11.9 28 244-271 2-29 (178)
110 2c9o_A RUVB-like 1; hexameric 98.0 1.4E-05 4.7E-10 84.2 10.2 129 302-466 296-438 (456)
111 1svm_A Large T antigen; AAA+ f 98.0 1.6E-06 5.3E-11 89.3 2.7 115 239-375 166-283 (377)
112 1z6t_A APAF-1, apoptotic prote 97.9 0.00017 5.9E-09 77.7 17.0 168 206-412 121-321 (591)
113 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.00015 5.1E-09 67.7 11.9 37 239-275 20-59 (235)
114 3sfz_A APAF-1, apoptotic pepti 97.7 0.00039 1.4E-08 80.7 16.9 172 204-412 119-321 (1249)
115 2z43_A DNA repair and recombin 97.7 8.7E-05 3E-09 74.4 9.7 78 239-316 104-218 (324)
116 1n0w_A DNA repair protein RAD5 97.7 6E-05 2E-09 71.3 8.0 78 239-316 21-134 (243)
117 3hr8_A Protein RECA; alpha and 97.7 0.0001 3.6E-09 75.1 9.6 78 238-315 57-153 (356)
118 1xp8_A RECA protein, recombina 97.7 0.00013 4.5E-09 74.6 10.4 77 239-315 71-166 (366)
119 2cvh_A DNA repair and recombin 97.7 0.00021 7.2E-09 66.4 11.0 40 238-277 16-55 (220)
120 1v5w_A DMC1, meiotic recombina 97.7 0.00017 6E-09 72.9 10.8 79 238-316 118-234 (343)
121 4a74_A DNA repair and recombin 97.7 0.00014 4.8E-09 68.0 9.4 38 239-276 22-68 (231)
122 2zr9_A Protein RECA, recombina 97.7 9.5E-05 3.2E-09 75.2 8.8 78 238-315 57-153 (349)
123 2ehv_A Hypothetical protein PH 97.6 0.00033 1.1E-08 66.3 11.5 37 239-275 27-67 (251)
124 1qhx_A CPT, protein (chloramph 97.6 4.3E-05 1.5E-09 68.9 4.9 36 243-278 4-39 (178)
125 1u94_A RECA protein, recombina 97.5 0.0002 7E-09 72.9 9.2 77 239-315 60-155 (356)
126 3trf_A Shikimate kinase, SK; a 97.5 6.4E-05 2.2E-09 68.3 4.0 32 242-273 5-36 (185)
127 3upu_A ATP-dependent DNA helic 97.5 0.0002 6.8E-09 75.3 8.3 56 198-266 13-69 (459)
128 2b8t_A Thymidine kinase; deoxy 97.5 0.00019 6.5E-09 68.4 7.2 71 242-313 12-101 (223)
129 3cmu_A Protein RECA, recombina 97.4 0.00031 1E-08 85.2 10.3 79 238-316 1077-1174(2050)
130 3lda_A DNA repair protein RAD5 97.4 0.0003 1E-08 72.8 8.5 79 238-316 174-288 (400)
131 1pzn_A RAD51, DNA repair and r 97.4 0.00046 1.6E-08 70.0 9.7 39 239-277 128-175 (349)
132 3vaa_A Shikimate kinase, SK; s 97.4 9E-05 3.1E-09 68.6 4.1 34 240-273 23-56 (199)
133 2iut_A DNA translocase FTSK; n 97.4 0.0014 4.9E-08 70.4 13.8 74 303-387 345-420 (574)
134 2i1q_A DNA repair and recombin 97.4 0.00038 1.3E-08 69.4 8.7 79 238-316 94-219 (322)
135 2p5t_B PEZT; postsegregational 97.4 0.00062 2.1E-08 65.5 9.9 39 240-278 30-68 (253)
136 1gvn_B Zeta; postsegregational 97.4 0.00061 2.1E-08 67.2 9.7 38 241-278 32-69 (287)
137 2a5y_B CED-4; apoptosis; HET: 97.3 0.0021 7.1E-08 69.0 14.6 166 212-412 131-330 (549)
138 3dm5_A SRP54, signal recogniti 97.3 0.0037 1.3E-07 65.3 15.9 98 215-312 73-193 (443)
139 2dr3_A UPF0273 protein PH0284; 97.3 0.0016 5.4E-08 61.4 12.0 39 238-276 19-60 (247)
140 2orw_A Thymidine kinase; TMTK, 97.3 0.00031 1E-08 64.7 6.3 32 243-274 4-38 (184)
141 3iij_A Coilin-interacting nucl 97.3 0.00017 5.8E-09 65.3 4.2 32 242-273 11-42 (180)
142 3kb2_A SPBC2 prophage-derived 97.3 0.00018 6E-09 64.1 4.2 31 244-274 3-33 (173)
143 2rhm_A Putative kinase; P-loop 97.2 0.00023 7.9E-09 64.7 4.9 33 241-273 4-36 (193)
144 1zuh_A Shikimate kinase; alpha 97.2 0.00017 5.8E-09 64.6 3.8 31 243-273 8-38 (168)
145 1via_A Shikimate kinase; struc 97.2 0.00022 7.6E-09 64.3 4.4 29 244-272 6-34 (175)
146 2iyv_A Shikimate kinase, SK; t 97.2 0.00018 6.1E-09 65.3 3.7 31 243-273 3-33 (184)
147 1kag_A SKI, shikimate kinase I 97.2 0.00029 1E-08 63.0 4.7 29 243-271 5-33 (173)
148 1y63_A LMAJ004144AAA protein; 97.2 0.0002 6.9E-09 65.4 3.7 32 242-273 10-42 (184)
149 1zp6_A Hypothetical protein AT 97.2 0.00024 8.1E-09 64.7 4.0 39 240-278 7-45 (191)
150 3cmw_A Protein RECA, recombina 97.2 0.0006 2E-08 81.7 8.4 78 238-315 728-824 (1706)
151 1vma_A Cell division protein F 97.1 0.0016 5.5E-08 64.8 10.3 95 217-311 79-196 (306)
152 2dl1_A Spartin; SPG20, MIT, st 97.1 6.1E-05 2.1E-09 63.7 -0.1 82 14-95 12-102 (116)
153 1tev_A UMP-CMP kinase; ploop, 97.1 0.00025 8.7E-09 64.3 3.9 31 242-272 3-33 (196)
154 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00094 3.2E-08 64.6 8.2 38 242-279 4-44 (260)
155 2cdn_A Adenylate kinase; phosp 97.1 0.00028 9.5E-09 65.1 4.2 32 242-273 20-51 (201)
156 2zts_A Putative uncharacterize 97.1 0.0028 9.4E-08 59.7 11.3 79 238-316 26-150 (251)
157 2c95_A Adenylate kinase 1; tra 97.1 0.00027 9.4E-09 64.4 4.0 33 241-273 8-40 (196)
158 2ius_A DNA translocase FTSK; n 97.1 0.0063 2.2E-07 64.7 14.8 74 304-388 300-375 (512)
159 3lw7_A Adenylate kinase relate 97.1 0.00027 9.3E-09 62.6 3.4 29 244-273 3-31 (179)
160 3io5_A Recombination and repai 97.1 0.0011 3.9E-08 66.2 8.2 77 238-315 25-125 (333)
161 1aky_A Adenylate kinase; ATP:A 97.1 0.00044 1.5E-08 64.8 4.9 32 242-273 4-35 (220)
162 3cm0_A Adenylate kinase; ATP-b 97.1 0.00035 1.2E-08 63.3 4.1 30 242-271 4-33 (186)
163 2ze6_A Isopentenyl transferase 97.0 0.00035 1.2E-08 67.5 4.2 32 244-275 3-34 (253)
164 2vli_A Antibiotic resistance p 97.0 0.00032 1.1E-08 63.3 3.6 30 242-271 5-34 (183)
165 1e6c_A Shikimate kinase; phosp 97.0 0.00043 1.5E-08 61.8 4.4 30 243-272 3-32 (173)
166 3kl4_A SRP54, signal recogniti 97.0 0.0073 2.5E-07 63.0 14.0 73 241-313 96-191 (433)
167 1g5t_A COB(I)alamin adenosyltr 97.0 0.0075 2.6E-07 56.1 12.6 114 243-372 29-175 (196)
168 2bwj_A Adenylate kinase 5; pho 97.0 0.00039 1.3E-08 63.5 3.7 32 242-273 12-43 (199)
169 1qf9_A UMP/CMP kinase, protein 97.0 0.00045 1.5E-08 62.5 4.1 32 242-273 6-37 (194)
170 3t61_A Gluconokinase; PSI-biol 97.0 0.00058 2E-08 63.0 4.8 31 242-272 18-48 (202)
171 1ly1_A Polynucleotide kinase; 97.0 0.0004 1.4E-08 62.3 3.5 27 243-269 3-30 (181)
172 1kht_A Adenylate kinase; phosp 97.0 0.00047 1.6E-08 62.4 4.0 25 243-267 4-28 (192)
173 3tlx_A Adenylate kinase 2; str 97.0 0.00047 1.6E-08 66.1 4.2 33 241-273 28-60 (243)
174 1zd8_A GTP:AMP phosphotransfer 97.0 0.0004 1.4E-08 65.4 3.7 32 242-273 7-38 (227)
175 3e1s_A Exodeoxyribonuclease V, 97.0 0.00082 2.8E-08 72.8 6.5 32 243-274 205-239 (574)
176 3dl0_A Adenylate kinase; phosp 97.0 0.00042 1.4E-08 64.6 3.7 30 244-273 2-31 (216)
177 1knq_A Gluconate kinase; ALFA/ 97.0 0.00067 2.3E-08 60.9 4.9 35 242-278 8-42 (175)
178 1ukz_A Uridylate kinase; trans 96.9 0.0005 1.7E-08 63.3 4.1 32 242-273 15-46 (203)
179 2pt5_A Shikimate kinase, SK; a 96.9 0.00043 1.5E-08 61.6 3.6 29 244-272 2-30 (168)
180 3fb4_A Adenylate kinase; psych 96.9 0.00042 1.4E-08 64.5 3.6 30 244-273 2-31 (216)
181 1ak2_A Adenylate kinase isoenz 96.9 0.00067 2.3E-08 64.3 5.0 32 242-273 16-47 (233)
182 3crm_A TRNA delta(2)-isopenten 96.9 0.00044 1.5E-08 69.4 3.8 34 243-276 6-39 (323)
183 3umf_A Adenylate kinase; rossm 96.9 0.00068 2.3E-08 64.2 4.9 40 239-280 26-65 (217)
184 1nlf_A Regulatory protein REPA 96.9 0.0065 2.2E-07 59.0 12.0 28 239-266 27-54 (279)
185 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00044 1.5E-08 70.2 3.3 53 212-272 2-54 (359)
186 4eun_A Thermoresistant glucoki 96.9 0.00083 2.8E-08 62.0 4.9 36 241-278 28-63 (200)
187 3be4_A Adenylate kinase; malar 96.9 0.0005 1.7E-08 64.5 3.4 31 243-273 6-36 (217)
188 2pez_A Bifunctional 3'-phospho 96.9 0.00086 2.9E-08 60.6 4.8 37 241-277 4-43 (179)
189 1zak_A Adenylate kinase; ATP:A 96.8 0.0006 2.1E-08 63.9 3.8 31 242-272 5-35 (222)
190 3jvv_A Twitching mobility prot 96.8 0.0012 4E-08 67.3 6.1 70 242-311 123-206 (356)
191 4gp7_A Metallophosphoesterase; 96.8 0.004 1.4E-07 56.1 8.9 21 241-261 8-28 (171)
192 2fz4_A DNA repair protein RAD2 96.8 0.0022 7.7E-08 61.1 7.5 37 243-279 109-146 (237)
193 3sr0_A Adenylate kinase; phosp 96.8 0.00092 3.2E-08 62.7 4.4 34 244-279 2-35 (206)
194 3uie_A Adenylyl-sulfate kinase 96.8 0.0011 3.8E-08 61.1 4.9 39 240-278 23-64 (200)
195 2v54_A DTMP kinase, thymidylat 96.8 0.001 3.5E-08 61.0 4.7 33 242-274 4-37 (204)
196 2bbw_A Adenylate kinase 4, AK4 96.8 0.00097 3.3E-08 63.7 4.5 31 241-271 26-56 (246)
197 1nks_A Adenylate kinase; therm 96.7 0.00076 2.6E-08 61.0 3.6 34 244-277 3-39 (194)
198 2eyu_A Twitching motility prot 96.7 0.0017 5.9E-08 63.1 6.2 71 240-311 23-108 (261)
199 2pbr_A DTMP kinase, thymidylat 96.7 0.0012 4.1E-08 59.8 4.8 31 244-274 2-35 (195)
200 1e4v_A Adenylate kinase; trans 96.7 0.0011 3.8E-08 61.8 4.4 30 244-273 2-31 (214)
201 1ex7_A Guanylate kinase; subst 96.7 0.0012 4E-08 61.1 4.5 24 243-266 2-25 (186)
202 2r6a_A DNAB helicase, replicat 96.7 0.0089 3E-07 62.5 11.7 38 238-275 199-240 (454)
203 2jaq_A Deoxyguanosine kinase; 96.7 0.0011 3.8E-08 60.5 4.2 29 244-272 2-30 (205)
204 1cke_A CK, MSSA, protein (cyti 96.7 0.0014 5E-08 61.1 5.0 29 243-271 6-34 (227)
205 2z0h_A DTMP kinase, thymidylat 96.6 0.0016 5.4E-08 59.3 4.8 30 245-274 3-35 (197)
206 2xb4_A Adenylate kinase; ATP-b 96.6 0.0013 4.6E-08 61.9 4.4 29 244-272 2-30 (223)
207 3foz_A TRNA delta(2)-isopenten 96.6 0.00092 3.2E-08 66.7 3.3 37 242-278 10-46 (316)
208 2q6t_A DNAB replication FORK h 96.6 0.012 4.1E-07 61.4 12.0 38 238-275 196-237 (444)
209 1vt4_I APAF-1 related killer D 96.6 0.03 1E-06 64.3 15.8 44 211-265 130-173 (1221)
210 2if2_A Dephospho-COA kinase; a 96.5 0.0012 4.2E-08 60.7 3.3 29 244-273 3-31 (204)
211 2plr_A DTMP kinase, probable t 96.5 0.0017 6E-08 59.6 4.1 28 242-269 4-31 (213)
212 3ake_A Cytidylate kinase; CMP 96.5 0.0019 6.7E-08 59.2 4.4 30 244-273 4-33 (208)
213 2r8r_A Sensor protein; KDPD, P 96.5 0.0031 1.1E-07 60.0 5.8 33 243-275 7-42 (228)
214 3nwj_A ATSK2; P loop, shikimat 96.4 0.0022 7.4E-08 62.0 4.7 32 242-273 48-79 (250)
215 2wwf_A Thymidilate kinase, put 96.4 0.00085 2.9E-08 62.0 1.6 28 242-269 10-37 (212)
216 3r20_A Cytidylate kinase; stru 96.4 0.0024 8.1E-08 61.1 4.7 31 242-272 9-39 (233)
217 1uj2_A Uridine-cytidine kinase 96.4 0.0031 1E-07 60.5 5.5 38 242-279 22-67 (252)
218 2yvu_A Probable adenylyl-sulfa 96.4 0.0028 9.4E-08 57.5 4.9 37 241-277 12-51 (186)
219 1uf9_A TT1252 protein; P-loop, 96.4 0.0024 8.3E-08 58.3 4.5 31 241-272 7-37 (203)
220 2ewv_A Twitching motility prot 96.4 0.0029 9.8E-08 64.7 5.4 72 240-311 134-219 (372)
221 2qor_A Guanylate kinase; phosp 96.4 0.002 6.9E-08 59.6 3.9 29 239-267 9-37 (204)
222 3bh0_A DNAB-like replicative h 96.4 0.024 8.2E-07 56.3 12.1 38 238-275 64-104 (315)
223 1nn5_A Similar to deoxythymidy 96.4 0.0011 3.7E-08 61.3 2.0 26 242-267 9-34 (215)
224 2grj_A Dephospho-COA kinase; T 96.3 0.002 7E-08 59.6 3.6 29 244-272 14-42 (192)
225 3a8t_A Adenylate isopentenyltr 96.3 0.0018 6.3E-08 65.2 3.5 34 242-275 40-73 (339)
226 1jjv_A Dephospho-COA kinase; P 96.3 0.0022 7.6E-08 59.1 3.8 29 243-272 3-31 (206)
227 4e22_A Cytidylate kinase; P-lo 96.3 0.0033 1.1E-07 60.4 5.0 31 241-271 26-56 (252)
228 2px0_A Flagellar biosynthesis 96.3 0.016 5.6E-07 57.2 10.0 61 215-276 79-143 (296)
229 3b6e_A Interferon-induced heli 96.3 0.026 8.8E-07 51.6 10.8 24 243-266 49-72 (216)
230 1q3t_A Cytidylate kinase; nucl 96.2 0.0038 1.3E-07 59.1 5.1 34 239-272 13-46 (236)
231 1vht_A Dephospho-COA kinase; s 96.2 0.0038 1.3E-07 58.1 4.9 31 242-273 4-34 (218)
232 3thx_B DNA mismatch repair pro 96.2 0.015 5.2E-07 66.0 10.6 25 240-264 671-695 (918)
233 1m7g_A Adenylylsulfate kinase; 96.2 0.0032 1.1E-07 58.5 4.2 38 241-278 24-65 (211)
234 3eab_A Spastin; spastin, MIT, 96.1 0.00054 1.9E-08 55.2 -1.2 72 15-86 7-87 (89)
235 2qt1_A Nicotinamide riboside k 96.1 0.0026 9E-08 58.7 3.1 32 240-271 19-51 (207)
236 2gxq_A Heat resistant RNA depe 96.1 0.034 1.2E-06 50.6 10.7 23 243-265 39-62 (207)
237 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0029 1E-07 63.6 3.5 71 242-312 171-251 (330)
238 2h92_A Cytidylate kinase; ross 96.1 0.0045 1.5E-07 57.5 4.6 31 243-273 4-34 (219)
239 2j41_A Guanylate kinase; GMP, 96.1 0.0033 1.1E-07 57.6 3.6 26 241-266 5-30 (207)
240 3zvl_A Bifunctional polynucleo 96.0 0.0073 2.5E-07 62.5 6.4 36 241-278 257-292 (416)
241 1kgd_A CASK, peripheral plasma 96.0 0.0043 1.5E-07 56.3 3.9 26 242-267 5-30 (180)
242 3tau_A Guanylate kinase, GMP k 96.0 0.0039 1.3E-07 58.0 3.6 27 241-267 7-33 (208)
243 2yhs_A FTSY, cell division pro 96.0 0.057 1.9E-06 57.1 12.8 28 239-266 290-317 (503)
244 3e70_C DPA, signal recognition 96.0 0.033 1.1E-06 55.8 10.6 27 240-266 127-153 (328)
245 1ltq_A Polynucleotide kinase; 95.9 0.0043 1.5E-07 60.7 3.9 29 243-271 3-32 (301)
246 3exa_A TRNA delta(2)-isopenten 95.9 0.0049 1.7E-07 61.5 4.3 89 348-438 192-281 (322)
247 2bdt_A BH3686; alpha-beta prot 95.9 0.0055 1.9E-07 55.6 4.3 34 243-277 3-36 (189)
248 1w4r_A Thymidine kinase; type 95.9 0.018 6.1E-07 53.5 7.6 69 242-313 20-103 (195)
249 1qde_A EIF4A, translation init 95.9 0.066 2.2E-06 49.5 11.7 24 242-265 51-75 (224)
250 1q57_A DNA primase/helicase; d 95.9 0.044 1.5E-06 57.9 11.8 38 238-275 238-279 (503)
251 3thx_A DNA mismatch repair pro 95.9 0.028 9.7E-07 64.0 10.7 23 242-264 662-684 (934)
252 1zu4_A FTSY; GTPase, signal re 95.9 0.041 1.4E-06 55.0 10.8 37 239-275 102-141 (320)
253 2f6r_A COA synthase, bifunctio 95.9 0.0061 2.1E-07 59.7 4.6 30 242-272 75-104 (281)
254 3tr0_A Guanylate kinase, GMP k 95.8 0.0055 1.9E-07 56.0 4.0 27 241-267 6-32 (205)
255 3d3q_A TRNA delta(2)-isopenten 95.8 0.0046 1.6E-07 62.4 3.7 89 348-438 198-287 (340)
256 1p9r_A General secretion pathw 95.8 0.025 8.6E-07 58.7 9.4 69 242-310 167-245 (418)
257 1rz3_A Hypothetical protein rb 95.8 0.018 6.3E-07 53.0 7.6 36 241-276 21-59 (201)
258 1t6n_A Probable ATP-dependent 95.8 0.1 3.5E-06 48.1 12.7 24 243-266 52-75 (220)
259 3llm_A ATP-dependent RNA helic 95.8 0.045 1.5E-06 51.6 10.3 23 242-264 76-98 (235)
260 2axn_A 6-phosphofructo-2-kinas 95.8 0.02 6.7E-07 61.1 8.6 37 242-278 35-74 (520)
261 3bgw_A DNAB-like replicative h 95.8 0.049 1.7E-06 56.9 11.5 38 238-275 193-233 (444)
262 2qmh_A HPR kinase/phosphorylas 95.7 0.0049 1.7E-07 57.6 3.1 34 241-275 33-66 (205)
263 3fdi_A Uncharacterized protein 95.7 0.0066 2.3E-07 56.4 4.0 30 243-272 7-36 (201)
264 3asz_A Uridine kinase; cytidin 95.7 0.0065 2.2E-07 56.1 3.9 35 241-275 5-39 (211)
265 1j8m_F SRP54, signal recogniti 95.7 0.055 1.9E-06 53.4 10.9 71 242-312 98-191 (297)
266 2j37_W Signal recognition part 95.7 0.043 1.5E-06 58.2 10.6 35 241-275 100-137 (504)
267 1lvg_A Guanylate kinase, GMP k 95.7 0.0058 2E-07 56.4 3.4 27 241-267 3-29 (198)
268 2v3c_C SRP54, signal recogniti 95.6 0.083 2.8E-06 54.9 12.5 36 241-276 98-136 (432)
269 3c8u_A Fructokinase; YP_612366 95.6 0.0069 2.4E-07 56.1 3.8 28 240-267 20-47 (208)
270 3eph_A TRNA isopentenyltransfe 95.6 0.0073 2.5E-07 62.3 4.1 33 242-274 2-34 (409)
271 1xx6_A Thymidine kinase; NESG, 95.6 0.018 6.2E-07 53.2 6.4 33 242-274 8-43 (191)
272 1tf7_A KAIC; homohexamer, hexa 95.5 0.044 1.5E-06 58.3 10.1 77 239-315 278-385 (525)
273 3a00_A Guanylate kinase, GMP k 95.5 0.0076 2.6E-07 54.8 3.5 25 243-267 2-26 (186)
274 2oap_1 GSPE-2, type II secreti 95.4 0.0082 2.8E-07 64.0 4.0 70 241-310 259-342 (511)
275 1ls1_A Signal recognition part 95.4 0.088 3E-06 51.8 11.1 72 241-312 97-191 (295)
276 2xau_A PRE-mRNA-splicing facto 95.3 0.049 1.7E-06 60.9 10.1 24 242-265 109-132 (773)
277 4b3f_X DNA-binding protein smu 95.3 0.076 2.6E-06 58.0 11.4 49 214-276 191-242 (646)
278 1x6v_B Bifunctional 3'-phospho 95.3 0.014 4.7E-07 63.7 5.1 37 241-277 51-90 (630)
279 1vec_A ATP-dependent RNA helic 95.2 0.067 2.3E-06 48.7 9.1 18 243-260 41-58 (206)
280 1tf7_A KAIC; homohexamer, hexa 95.2 0.049 1.7E-06 58.0 9.3 37 240-276 37-77 (525)
281 1c9k_A COBU, adenosylcobinamid 95.2 0.01 3.6E-07 54.4 3.5 32 245-277 2-33 (180)
282 3b9q_A Chloroplast SRP recepto 95.2 0.023 8E-07 56.2 6.3 52 215-266 70-124 (302)
283 3ney_A 55 kDa erythrocyte memb 95.2 0.012 4E-07 54.8 3.8 27 241-267 18-44 (197)
284 4eaq_A DTMP kinase, thymidylat 95.2 0.015 5.1E-07 55.1 4.5 32 241-272 25-58 (229)
285 2ffh_A Protein (FFH); SRP54, s 95.1 0.11 3.8E-06 53.9 11.3 70 241-310 97-189 (425)
286 1gtv_A TMK, thymidylate kinase 95.1 0.0058 2E-07 56.3 1.5 24 244-267 2-25 (214)
287 1z6g_A Guanylate kinase; struc 95.1 0.012 4.1E-07 55.2 3.7 28 239-266 20-47 (218)
288 1znw_A Guanylate kinase, GMP k 95.1 0.013 4.5E-07 54.2 3.9 28 240-267 18-45 (207)
289 1wb9_A DNA mismatch repair pro 95.1 0.072 2.5E-06 59.7 10.5 25 241-265 606-630 (800)
290 1htw_A HI0065; nucleotide-bind 95.1 0.015 5.2E-07 52.0 4.1 27 240-266 31-57 (158)
291 2xxa_A Signal recognition part 95.1 0.06 2.1E-06 56.0 9.1 71 240-310 98-192 (433)
292 1s96_A Guanylate kinase, GMP k 95.0 0.014 4.9E-07 55.0 3.9 29 239-267 13-41 (219)
293 3hdt_A Putative kinase; struct 95.0 0.016 5.3E-07 55.0 4.0 30 243-272 15-44 (223)
294 1a7j_A Phosphoribulokinase; tr 95.0 0.012 4.2E-07 57.8 3.3 36 243-278 6-44 (290)
295 3gmt_A Adenylate kinase; ssgci 95.0 0.017 5.7E-07 55.1 4.2 34 244-279 10-43 (230)
296 1cr0_A DNA primase/helicase; R 94.9 0.025 8.6E-07 55.2 5.4 37 239-275 32-72 (296)
297 2jeo_A Uridine-cytidine kinase 94.9 0.018 6.2E-07 54.8 4.1 30 240-269 23-52 (245)
298 2og2_A Putative signal recogni 94.8 0.033 1.1E-06 56.6 6.2 52 215-266 127-181 (359)
299 1g41_A Heat shock protein HSLU 94.8 0.0032 1.1E-07 65.9 -1.4 58 326-386 127-188 (444)
300 3dkp_A Probable ATP-dependent 94.8 0.14 4.8E-06 48.1 10.3 17 243-259 67-83 (245)
301 2j9r_A Thymidine kinase; TK1, 94.8 0.048 1.6E-06 51.3 6.8 33 243-275 29-64 (214)
302 2v9p_A Replication protein E1; 94.8 0.019 6.5E-07 57.0 4.1 32 239-270 123-154 (305)
303 1bif_A 6-phosphofructo-2-kinas 94.7 0.072 2.5E-06 55.8 8.5 33 242-274 39-74 (469)
304 2oxc_A Probable ATP-dependent 94.7 0.18 6.3E-06 46.9 10.6 18 242-259 61-78 (230)
305 1hv8_A Putative ATP-dependent 94.6 0.1 3.4E-06 51.4 9.1 24 243-266 45-68 (367)
306 2pl3_A Probable ATP-dependent 94.6 0.15 5E-06 47.6 9.6 52 206-260 25-80 (236)
307 1m8p_A Sulfate adenylyltransfe 94.5 0.022 7.4E-07 61.6 4.2 37 241-277 395-435 (573)
308 3lnc_A Guanylate kinase, GMP k 94.4 0.016 5.3E-07 54.5 2.4 27 240-266 25-52 (231)
309 3tqc_A Pantothenate kinase; bi 94.4 0.086 3E-06 52.6 7.9 26 242-267 92-117 (321)
310 1odf_A YGR205W, hypothetical 3 94.4 0.048 1.7E-06 53.6 6.0 27 241-267 30-56 (290)
311 1xti_A Probable ATP-dependent 94.3 0.49 1.7E-05 47.1 13.5 24 242-265 45-68 (391)
312 3p32_A Probable GTPase RV1496/ 94.3 0.095 3.3E-06 52.8 8.2 33 242-274 79-114 (355)
313 2ocp_A DGK, deoxyguanosine kin 94.2 0.033 1.1E-06 52.6 4.3 26 242-267 2-27 (241)
314 3qf4_B Uncharacterized ABC tra 94.2 0.13 4.6E-06 55.5 9.6 28 239-266 378-405 (598)
315 1xjc_A MOBB protein homolog; s 94.2 0.051 1.7E-06 49.2 5.3 32 243-274 5-39 (169)
316 3fe2_A Probable ATP-dependent 94.2 0.15 5E-06 48.0 8.8 19 243-261 67-85 (242)
317 3tqf_A HPR(Ser) kinase; transf 94.2 0.027 9.1E-07 51.4 3.3 29 241-270 15-43 (181)
318 2i3b_A HCR-ntpase, human cance 94.2 0.028 9.6E-07 51.7 3.6 23 244-266 3-25 (189)
319 3cr8_A Sulfate adenylyltranfer 94.1 0.034 1.2E-06 59.8 4.6 38 241-278 368-409 (552)
320 3aez_A Pantothenate kinase; tr 94.1 0.032 1.1E-06 55.5 4.2 27 240-266 88-114 (312)
321 3tbk_A RIG-I helicase domain; 94.1 0.3 1E-05 51.0 11.9 33 243-275 20-60 (555)
322 1sq5_A Pantothenate kinase; P- 94.1 0.051 1.8E-06 53.7 5.6 27 241-267 79-105 (308)
323 1p5z_B DCK, deoxycytidine kina 94.1 0.015 5.2E-07 55.9 1.5 27 241-267 23-49 (263)
324 4f4c_A Multidrug resistance pr 94.0 0.11 3.8E-06 61.5 8.9 28 239-266 441-468 (1321)
325 4edh_A DTMP kinase, thymidylat 94.0 0.057 2E-06 50.6 5.3 32 242-273 6-40 (213)
326 2qm8_A GTPase/ATPase; G protei 93.9 0.16 5.3E-06 51.0 8.8 27 240-266 53-79 (337)
327 3iuy_A Probable ATP-dependent 93.9 0.29 1E-05 45.2 10.1 20 242-261 57-76 (228)
328 2o8b_B DNA mismatch repair pro 93.8 0.23 7.7E-06 57.2 10.9 23 242-264 789-811 (1022)
329 1rj9_A FTSY, signal recognitio 93.8 0.038 1.3E-06 54.7 4.0 26 241-266 101-126 (304)
330 2ged_A SR-beta, signal recogni 93.7 0.071 2.4E-06 47.7 5.4 26 241-266 47-72 (193)
331 3tif_A Uncharacterized ABC tra 93.7 0.03 1E-06 53.3 2.9 28 239-266 28-55 (235)
332 1ewq_A DNA mismatch repair pro 93.7 0.19 6.5E-06 56.0 9.8 24 242-265 576-599 (765)
333 3pey_A ATP-dependent RNA helic 93.7 0.16 5.6E-06 50.5 8.5 22 242-263 44-65 (395)
334 3ice_A Transcription terminati 93.7 0.14 4.8E-06 52.6 7.9 27 240-266 172-198 (422)
335 2cbz_A Multidrug resistance-as 93.6 0.032 1.1E-06 53.1 2.9 28 239-266 28-55 (237)
336 3tmk_A Thymidylate kinase; pho 93.6 0.074 2.5E-06 50.0 5.3 30 242-271 5-34 (216)
337 3v9p_A DTMP kinase, thymidylat 93.5 0.066 2.2E-06 50.8 4.8 26 241-266 24-49 (227)
338 3kta_A Chromosome segregation 93.4 0.043 1.5E-06 49.1 3.4 24 244-267 28-51 (182)
339 1s2m_A Putative ATP-dependent 93.4 0.16 5.6E-06 50.9 8.0 22 243-264 59-80 (400)
340 2gk6_A Regulator of nonsense t 93.4 0.067 2.3E-06 58.2 5.4 24 243-266 196-219 (624)
341 1sky_E F1-ATPase, F1-ATP synth 93.4 0.044 1.5E-06 57.6 3.7 25 242-266 151-175 (473)
342 1np6_A Molybdopterin-guanine d 93.4 0.055 1.9E-06 49.1 3.9 24 243-266 7-30 (174)
343 2pcj_A ABC transporter, lipopr 93.3 0.037 1.3E-06 52.2 2.8 28 239-266 27-54 (224)
344 2fwr_A DNA repair protein RAD2 93.3 0.067 2.3E-06 55.5 5.0 37 243-279 109-146 (472)
345 4a1f_A DNAB helicase, replicat 93.3 0.086 2.9E-06 53.1 5.6 37 239-275 43-82 (338)
346 1mv5_A LMRA, multidrug resista 93.3 0.038 1.3E-06 52.7 2.9 28 239-266 25-52 (243)
347 1g8f_A Sulfate adenylyltransfe 93.2 0.045 1.5E-06 58.2 3.4 27 242-268 395-421 (511)
348 1b0u_A Histidine permease; ABC 93.2 0.041 1.4E-06 53.2 2.9 28 239-266 29-56 (262)
349 2j0s_A ATP-dependent RNA helic 93.1 0.25 8.4E-06 49.9 8.8 23 242-264 74-96 (410)
350 3oiy_A Reverse gyrase helicase 93.1 0.17 6E-06 51.3 7.7 23 243-265 37-59 (414)
351 4i1u_A Dephospho-COA kinase; s 93.0 0.058 2E-06 50.6 3.6 31 243-274 10-40 (210)
352 3lv8_A DTMP kinase, thymidylat 93.0 0.059 2E-06 51.4 3.8 25 242-266 27-51 (236)
353 2ghi_A Transport protein; mult 93.0 0.044 1.5E-06 52.9 2.9 28 239-266 43-70 (260)
354 2p67_A LAO/AO transport system 93.0 0.27 9.2E-06 49.2 8.8 26 241-266 55-80 (341)
355 2zu0_C Probable ATP-dependent 93.0 0.052 1.8E-06 52.6 3.4 27 239-265 43-69 (267)
356 2gza_A Type IV secretion syste 93.0 0.039 1.3E-06 55.9 2.6 72 240-311 173-262 (361)
357 3b85_A Phosphate starvation-in 93.0 0.048 1.7E-06 50.9 3.0 24 242-265 22-45 (208)
358 2onk_A Molybdate/tungstate ABC 93.0 0.051 1.7E-06 51.9 3.2 27 239-266 22-48 (240)
359 2zj8_A DNA helicase, putative 93.0 0.19 6.6E-06 55.3 8.3 33 242-274 39-75 (720)
360 2ixe_A Antigen peptide transpo 92.9 0.047 1.6E-06 53.1 2.9 28 239-266 42-69 (271)
361 3ly5_A ATP-dependent RNA helic 92.9 0.51 1.7E-05 45.0 10.3 19 243-261 92-110 (262)
362 2d2e_A SUFC protein; ABC-ATPas 92.9 0.059 2E-06 51.7 3.5 27 239-265 26-52 (250)
363 2pze_A Cystic fibrosis transme 92.8 0.042 1.4E-06 52.0 2.4 28 239-266 31-58 (229)
364 4a2p_A RIG-I, retinoic acid in 92.8 0.54 1.9E-05 49.2 11.3 33 243-275 23-63 (556)
365 1g6h_A High-affinity branched- 92.8 0.042 1.4E-06 53.0 2.4 28 239-266 30-57 (257)
366 2olj_A Amino acid ABC transpor 92.8 0.049 1.7E-06 52.8 2.9 28 239-266 47-74 (263)
367 2ff7_A Alpha-hemolysin translo 92.8 0.043 1.5E-06 52.6 2.4 28 239-266 32-59 (247)
368 1sgw_A Putative ABC transporte 92.8 0.05 1.7E-06 51.1 2.8 27 240-266 33-59 (214)
369 2dyk_A GTP-binding protein; GT 92.8 0.067 2.3E-06 46.1 3.4 23 243-265 2-24 (161)
370 2f1r_A Molybdopterin-guanine d 92.7 0.039 1.3E-06 49.9 1.9 25 243-267 3-27 (171)
371 2yz2_A Putative ABC transporte 92.7 0.052 1.8E-06 52.6 2.9 28 239-266 30-57 (266)
372 1ji0_A ABC transporter; ATP bi 92.7 0.044 1.5E-06 52.2 2.4 28 239-266 29-56 (240)
373 1nrj_B SR-beta, signal recogni 92.7 0.075 2.6E-06 48.7 3.9 25 242-266 12-36 (218)
374 3fvq_A Fe(3+) IONS import ATP- 92.7 0.056 1.9E-06 54.9 3.2 28 239-266 27-54 (359)
375 1vpl_A ABC transporter, ATP-bi 92.7 0.052 1.8E-06 52.4 2.9 28 239-266 38-65 (256)
376 3k53_A Ferrous iron transport 92.7 0.12 4.2E-06 49.7 5.5 23 243-265 4-26 (271)
377 3sop_A Neuronal-specific septi 92.7 0.062 2.1E-06 52.2 3.3 23 244-266 4-26 (270)
378 2wsm_A Hydrogenase expression/ 92.7 0.091 3.1E-06 48.3 4.4 25 243-267 31-55 (221)
379 2f9l_A RAB11B, member RAS onco 92.6 0.063 2.2E-06 48.7 3.2 23 243-265 6-28 (199)
380 3ld9_A DTMP kinase, thymidylat 92.6 0.081 2.8E-06 50.0 4.0 27 242-268 21-47 (223)
381 3gfo_A Cobalt import ATP-bindi 92.6 0.046 1.6E-06 53.4 2.4 28 239-266 31-58 (275)
382 1lw7_A Transcriptional regulat 92.6 0.066 2.3E-06 54.1 3.6 28 242-269 170-197 (365)
383 1oix_A RAS-related protein RAB 92.6 0.061 2.1E-06 48.7 3.0 23 244-266 31-53 (191)
384 2v6i_A RNA helicase; membrane, 92.5 0.2 6.8E-06 51.8 7.2 22 242-263 2-24 (431)
385 2gks_A Bifunctional SAT/APS ki 92.5 0.087 3E-06 56.5 4.5 37 242-278 372-411 (546)
386 4g1u_C Hemin import ATP-bindin 92.5 0.06 2.1E-06 52.2 3.0 28 239-266 34-61 (266)
387 2qi9_C Vitamin B12 import ATP- 92.5 0.061 2.1E-06 51.7 3.0 29 239-267 23-51 (249)
388 3fmo_B ATP-dependent RNA helic 92.5 0.74 2.5E-05 45.0 11.0 51 206-259 92-148 (300)
389 3vkw_A Replicase large subunit 92.5 0.048 1.7E-06 56.9 2.4 25 241-265 160-184 (446)
390 2yyz_A Sugar ABC transporter, 92.4 0.069 2.3E-06 54.2 3.4 28 239-266 26-53 (359)
391 2i4i_A ATP-dependent RNA helic 92.4 0.42 1.4E-05 48.1 9.4 18 242-259 52-69 (417)
392 2it1_A 362AA long hypothetical 92.4 0.069 2.3E-06 54.3 3.4 28 239-266 26-53 (362)
393 3eiq_A Eukaryotic initiation f 92.4 0.28 9.6E-06 49.3 8.0 21 242-262 77-97 (414)
394 3rlf_A Maltose/maltodextrin im 92.3 0.071 2.4E-06 54.5 3.4 28 239-266 26-53 (381)
395 2nq2_C Hypothetical ABC transp 92.3 0.053 1.8E-06 52.2 2.3 28 239-266 28-55 (253)
396 1v43_A Sugar-binding transport 92.3 0.072 2.5E-06 54.3 3.4 28 239-266 34-61 (372)
397 1z2a_A RAS-related protein RAB 92.3 0.083 2.8E-06 45.7 3.4 23 243-265 6-28 (168)
398 3fmp_B ATP-dependent RNA helic 92.3 0.34 1.2E-05 50.3 8.7 18 242-259 131-148 (479)
399 2wjy_A Regulator of nonsense t 92.3 0.12 4E-06 58.0 5.4 24 243-266 372-395 (800)
400 1nij_A Hypothetical protein YJ 92.3 0.13 4.6E-06 50.9 5.3 24 243-266 5-28 (318)
401 2ihy_A ABC transporter, ATP-bi 92.2 0.054 1.9E-06 52.9 2.4 28 239-266 44-71 (279)
402 1w36_D RECD, exodeoxyribonucle 92.2 0.07 2.4E-06 57.9 3.5 24 243-266 165-188 (608)
403 4tmk_A Protein (thymidylate ki 92.2 0.091 3.1E-06 49.2 3.7 24 243-266 4-27 (213)
404 1z47_A CYSA, putative ABC-tran 92.1 0.08 2.7E-06 53.6 3.5 27 240-266 39-65 (355)
405 2ce2_X GTPase HRAS; signaling 92.1 0.083 2.8E-06 45.3 3.2 24 243-266 4-27 (166)
406 1kao_A RAP2A; GTP-binding prot 92.1 0.089 3E-06 45.3 3.4 23 243-265 4-26 (167)
407 3d31_A Sulfate/molybdate ABC t 92.1 0.061 2.1E-06 54.4 2.6 28 239-266 23-50 (348)
408 1u8z_A RAS-related protein RAL 92.1 0.084 2.9E-06 45.5 3.2 23 243-265 5-27 (168)
409 3fht_A ATP-dependent RNA helic 92.1 0.38 1.3E-05 48.2 8.5 19 242-260 64-82 (412)
410 2ykg_A Probable ATP-dependent 92.1 0.59 2E-05 50.8 10.7 23 243-265 29-51 (696)
411 2hf9_A Probable hydrogenase ni 92.0 0.19 6.5E-06 46.3 5.8 25 242-266 38-62 (226)
412 2vp4_A Deoxynucleoside kinase; 91.9 0.088 3E-06 49.4 3.4 33 240-273 18-50 (230)
413 1ek0_A Protein (GTP-binding pr 91.9 0.096 3.3E-06 45.3 3.4 24 243-266 4-27 (170)
414 4ag6_A VIRB4 ATPase, type IV s 91.9 0.15 5E-06 51.9 5.2 35 241-275 34-71 (392)
415 1upt_A ARL1, ADP-ribosylation 91.9 0.12 4E-06 44.9 3.9 25 241-265 6-30 (171)
416 1g29_1 MALK, maltose transport 91.9 0.09 3.1E-06 53.6 3.5 27 240-266 27-53 (372)
417 1wrb_A DJVLGB; RNA helicase, D 91.8 0.89 3E-05 42.7 10.4 18 243-260 61-78 (253)
418 4f4c_A Multidrug resistance pr 91.8 0.3 1E-05 57.7 8.5 28 239-266 1102-1129(1321)
419 1fuu_A Yeast initiation factor 91.8 0.43 1.5E-05 47.5 8.6 18 243-260 59-76 (394)
420 1z0j_A RAB-22, RAS-related pro 91.8 0.1 3.5E-06 45.2 3.4 24 243-266 7-30 (170)
421 2lkc_A Translation initiation 91.8 0.13 4.3E-06 45.1 4.0 24 241-264 7-30 (178)
422 2wji_A Ferrous iron transport 91.7 0.093 3.2E-06 46.0 3.1 23 243-265 4-26 (165)
423 2zej_A Dardarin, leucine-rich 91.7 0.076 2.6E-06 47.5 2.5 21 244-264 4-24 (184)
424 1wms_A RAB-9, RAB9, RAS-relate 91.7 0.1 3.6E-06 45.6 3.4 23 243-265 8-30 (177)
425 3gd7_A Fusion complex of cysti 91.7 0.088 3E-06 54.0 3.2 28 239-266 44-71 (390)
426 2bbs_A Cystic fibrosis transme 91.6 0.078 2.7E-06 52.1 2.7 28 239-266 61-88 (290)
427 1z08_A RAS-related protein RAB 91.6 0.11 3.7E-06 45.1 3.4 23 243-265 7-29 (170)
428 1ky3_A GTP-binding protein YPT 91.6 0.11 3.7E-06 45.6 3.4 24 243-266 9-32 (182)
429 1g16_A RAS-related protein SEC 91.6 0.11 3.6E-06 45.1 3.2 23 243-265 4-26 (170)
430 2nzj_A GTP-binding protein REM 91.5 0.098 3.4E-06 45.6 3.0 23 243-265 5-27 (175)
431 1oxx_K GLCV, glucose, ABC tran 91.5 0.063 2.1E-06 54.4 1.9 28 239-266 28-55 (353)
432 1c1y_A RAS-related protein RAP 91.4 0.12 4E-06 44.7 3.4 23 243-265 4-26 (167)
433 2pjz_A Hypothetical protein ST 91.4 0.086 3E-06 51.0 2.7 27 239-266 28-54 (263)
434 1r2q_A RAS-related protein RAB 91.4 0.12 4.1E-06 44.7 3.4 23 243-265 7-29 (170)
435 1wp9_A ATP-dependent RNA helic 91.4 0.29 1E-05 49.6 6.9 32 244-275 25-60 (494)
436 3hjn_A DTMP kinase, thymidylat 91.3 0.19 6.3E-06 46.3 4.8 30 245-274 3-35 (197)
437 3bc1_A RAS-related protein RAB 91.3 0.12 4.1E-06 45.7 3.4 23 243-265 12-34 (195)
438 3nh6_A ATP-binding cassette SU 91.3 0.073 2.5E-06 52.8 2.1 28 239-266 77-104 (306)
439 2erx_A GTP-binding protein DI- 91.2 0.12 4E-06 44.8 3.2 23 243-265 4-26 (172)
440 1r8s_A ADP-ribosylation factor 91.2 0.13 4.4E-06 44.4 3.4 22 244-265 2-23 (164)
441 2gj8_A MNME, tRNA modification 91.2 0.12 4E-06 45.9 3.2 24 242-265 4-27 (172)
442 3q85_A GTP-binding protein REM 91.2 0.11 3.9E-06 45.0 3.1 21 244-264 4-24 (169)
443 1yrb_A ATP(GTP)binding protein 91.1 0.25 8.4E-06 46.7 5.6 34 242-275 14-49 (262)
444 4hlc_A DTMP kinase, thymidylat 91.1 0.19 6.6E-06 46.6 4.7 31 243-273 3-35 (205)
445 2xzl_A ATP-dependent helicase 91.1 0.17 5.9E-06 56.7 5.1 23 243-265 376-398 (802)
446 3fho_A ATP-dependent RNA helic 91.1 0.83 2.8E-05 48.0 10.2 24 242-265 158-182 (508)
447 3iby_A Ferrous iron transport 91.1 0.25 8.7E-06 47.3 5.7 23 243-265 2-24 (256)
448 1ko7_A HPR kinase/phosphatase; 91.1 0.15 5.3E-06 50.6 4.2 30 241-271 143-172 (314)
449 2wjg_A FEOB, ferrous iron tran 91.0 0.12 4E-06 46.0 3.1 23 243-265 8-30 (188)
450 1z0f_A RAB14, member RAS oncog 91.0 0.13 4.6E-06 44.8 3.4 24 243-266 16-39 (179)
451 2npi_A Protein CLP1; CLP1-PCF1 91.0 0.12 4.1E-06 54.2 3.5 27 240-266 136-162 (460)
452 2db3_A ATP-dependent RNA helic 91.0 1.2 4E-05 45.8 11.1 18 242-259 93-110 (434)
453 1f2t_A RAD50 ABC-ATPase; DNA d 91.0 0.14 4.8E-06 44.9 3.5 24 243-266 24-47 (149)
454 2y8e_A RAB-protein 6, GH09086P 90.9 0.13 4.5E-06 44.9 3.2 23 243-265 15-37 (179)
455 2fn4_A P23, RAS-related protei 90.9 0.13 4.5E-06 45.0 3.2 23 243-265 10-32 (181)
456 3clv_A RAB5 protein, putative; 90.9 0.16 5.3E-06 45.2 3.7 23 243-265 8-30 (208)
457 2a9k_A RAS-related protein RAL 90.9 0.13 4.5E-06 45.2 3.2 23 243-265 19-41 (187)
458 4dsu_A GTPase KRAS, isoform 2B 90.8 0.14 4.8E-06 45.2 3.4 24 243-266 5-28 (189)
459 3ch4_B Pmkase, phosphomevalona 90.8 0.23 7.8E-06 46.2 4.9 39 240-278 9-48 (202)
460 3con_A GTPase NRAS; structural 90.8 0.14 4.9E-06 45.5 3.4 24 243-266 22-45 (190)
461 2hxs_A RAB-26, RAS-related pro 90.8 0.13 4.3E-06 45.1 3.0 23 243-265 7-29 (178)
462 3q72_A GTP-binding protein RAD 90.8 0.14 4.8E-06 44.3 3.2 22 243-264 3-24 (166)
463 3i5x_A ATP-dependent RNA helic 90.7 1.2 4E-05 47.2 11.0 19 241-259 110-128 (563)
464 3tui_C Methionine import ATP-b 90.7 0.13 4.5E-06 52.2 3.4 28 239-266 51-78 (366)
465 1m7b_A RND3/RHOE small GTP-bin 90.7 0.13 4.5E-06 45.8 3.0 23 243-265 8-30 (184)
466 1pui_A ENGB, probable GTP-bind 90.7 0.084 2.9E-06 48.0 1.8 26 240-265 24-49 (210)
467 2efe_B Small GTP-binding prote 90.7 0.15 5.1E-06 44.8 3.4 23 243-265 13-35 (181)
468 2oil_A CATX-8, RAS-related pro 90.7 0.15 5.1E-06 45.6 3.4 23 243-265 26-48 (193)
469 1svi_A GTP-binding protein YSX 90.7 0.15 5.1E-06 45.5 3.4 24 242-265 23-46 (195)
470 2bme_A RAB4A, RAS-related prot 90.5 0.15 5E-06 45.1 3.2 23 243-265 11-33 (186)
471 3tw8_B RAS-related protein RAB 90.5 0.14 4.8E-06 44.8 3.0 22 243-264 10-31 (181)
472 2dpy_A FLII, flagellum-specifi 90.5 0.22 7.5E-06 51.8 4.9 30 240-269 155-184 (438)
473 3t1o_A Gliding protein MGLA; G 90.4 0.15 5.2E-06 45.3 3.2 24 243-266 15-38 (198)
474 2g6b_A RAS-related protein RAB 90.4 0.16 5.6E-06 44.5 3.4 24 243-266 11-34 (180)
475 1mh1_A RAC1; GTP-binding, GTPa 90.4 0.16 5.6E-06 44.6 3.4 23 243-265 6-28 (186)
476 3kkq_A RAS-related protein M-R 90.4 0.16 5.5E-06 44.8 3.4 23 243-265 19-41 (183)
477 3l9o_A ATP-dependent RNA helic 90.4 0.31 1.1E-05 56.6 6.5 34 242-275 199-235 (1108)
478 1m2o_B GTP-binding protein SAR 90.4 0.16 5.4E-06 45.8 3.3 24 242-265 23-46 (190)
479 2obl_A ESCN; ATPase, hydrolase 90.3 0.24 8.1E-06 49.9 4.9 29 241-269 70-98 (347)
480 4a2q_A RIG-I, retinoic acid in 90.3 1.3 4.6E-05 49.2 11.5 33 243-275 264-304 (797)
481 1knx_A Probable HPR(Ser) kinas 90.3 0.13 4.4E-06 51.2 2.8 30 241-271 146-175 (312)
482 1dek_A Deoxynucleoside monopho 90.3 0.14 4.8E-06 48.9 3.0 27 244-270 3-29 (241)
483 2cxx_A Probable GTP-binding pr 90.2 0.15 5.1E-06 45.2 3.0 22 244-265 3-24 (190)
484 3bwd_D RAC-like GTP-binding pr 90.2 0.2 6.8E-06 44.0 3.7 23 243-265 9-31 (182)
485 2atv_A RERG, RAS-like estrogen 90.1 0.19 6.7E-06 45.1 3.7 24 242-265 28-51 (196)
486 3i8s_A Ferrous iron transport 90.1 0.47 1.6E-05 45.8 6.6 23 243-265 4-26 (274)
487 2gf9_A RAS-related protein RAB 90.1 0.18 6.2E-06 45.0 3.4 24 243-266 23-46 (189)
488 2bov_A RAla, RAS-related prote 90.1 0.18 6.1E-06 45.4 3.4 23 243-265 15-37 (206)
489 2orv_A Thymidine kinase; TP4A 90.0 0.53 1.8E-05 44.7 6.7 32 243-274 20-54 (234)
490 3pqc_A Probable GTP-binding pr 90.0 0.19 6.4E-06 44.6 3.4 23 243-265 24-46 (195)
491 1moz_A ARL1, ADP-ribosylation 90.0 0.13 4.6E-06 45.3 2.4 24 241-264 17-40 (183)
492 3tkl_A RAS-related protein RAB 90.0 0.19 6.4E-06 44.9 3.4 24 243-266 17-40 (196)
493 1ksh_A ARF-like protein 2; sma 89.9 0.19 6.5E-06 44.6 3.4 25 241-265 17-41 (186)
494 3a1s_A Iron(II) transport prot 89.9 0.4 1.4E-05 45.9 5.9 22 243-264 6-27 (258)
495 2gf0_A GTP-binding protein DI- 89.9 0.21 7.1E-06 44.7 3.7 24 242-265 8-31 (199)
496 1vg8_A RAS-related protein RAB 89.8 0.19 6.5E-06 45.3 3.4 24 243-266 9-32 (207)
497 3dz8_A RAS-related protein RAB 89.8 0.18 6.2E-06 45.1 3.2 24 243-266 24-47 (191)
498 3ihw_A Centg3; RAS, centaurin, 89.8 0.18 6.3E-06 45.1 3.2 23 243-265 21-43 (184)
499 3c5c_A RAS-like protein 12; GD 89.8 0.18 6.2E-06 45.1 3.2 23 243-265 22-44 (187)
500 1e9r_A Conjugal transfer prote 89.8 0.25 8.5E-06 50.8 4.6 34 242-275 53-89 (437)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-47 Score=394.73 Aligned_cols=257 Identities=34% Similarity=0.560 Sum_probs=233.3
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
......+.|+++|+||+|++++|++|++.+.+|+.+|+.|... ..+++|+|||||||||||++|+++|++++.+|+.++
T Consensus 135 ~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 135 SLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp TSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 4556677899999999999999999999999999999999875 788899999999999999999999999999999999
Q ss_pred ccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 275 ~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
++++.++|+|++++.++.+|..|+..+||||||||+|++++.+.... .......+++++||..|||+... .+|+||+|
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vIaA 293 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKIIMA 293 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEEEE
T ss_pred hHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEEec
Confidence 99999999999999999999999999999999999999999875433 23345567889999999998654 45899999
Q ss_pred eCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 354 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 354 Tn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
||+|+.||+|++| ||++.|++++|+.++|.+||+.++++.+...++|++.+|+.|+||||+||..+|++|++.++++
T Consensus 294 TNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~- 372 (405)
T 4b4t_J 294 TNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE- 372 (405)
T ss_dssp ESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT-
T ss_pred cCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc-
Confidence 9999999999999 9999999999999999999999999999888999999999999999999999999999998874
Q ss_pred HHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh
Q 011305 432 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 471 (489)
Q Consensus 432 ~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~ 471 (489)
++ ..|+.+||..|++++.+...+
T Consensus 373 -----~~------------~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 -----RR------------IHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp -----TC------------SBCCHHHHHHHHHHHHHHHTC
T ss_pred -----CC------------CCcCHHHHHHHHHHHhCcccc
Confidence 11 249999999999998776543
No 2
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-46 Score=387.60 Aligned_cols=262 Identities=33% Similarity=0.559 Sum_probs=230.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+.+.|+++|+||+|++++|+.|++.+.+|+.+|+.|..+ ..+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 456799999999999999999999999999999999875 7889999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.++|+|++++.++.+|..|+..+||||||||+|.++..|.... .......+++..+|..|++.... ..|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR-GNIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT-TTEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC-CcEEEEeCCCCc
Confidence 9999999999999999999999999999999999998875432 33445567889999999988654 458999999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.||+|++| ||++.|+|++|+.++|.+||+.++++.....+++++.||+.|.||||+||+.+|++|++.++++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999998889999999999999999999999999999988751
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh--hHHHHHHHH
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL--HAHRYEKFN 480 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~--~~~~y~~~~ 480 (489)
+ ..|+.+||..|++++.++..+ ....|.+|+
T Consensus 435 --~------------~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 --R------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp --C------------SSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred --C------------CccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 1 238999999999998766543 357788886
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-45 Score=386.99 Aligned_cols=255 Identities=33% Similarity=0.560 Sum_probs=231.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
...+.|+++|+||+|++++|+.|++.+.+|+.+|+.|... .++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 3456799999999999999999999999999999999875 788899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+.++|+|++++.++.+|..|+..+||||||||+|.+++.|...... .....++++.||..||++... .+|+||+|||+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~-~~ViVIaaTNr 329 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD-DRVKVLAATNR 329 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS-CSSEEEEECSS
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC-CCEEEEEeCCC
Confidence 9999999999999999999999999999999999999988654332 234567889999999998754 45889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
|+.||+|++| ||++.|+||+|+.++|.+||+.++++.+...++|++.||+.|.||||+||..+|++|++.++++.
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~--- 406 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG--- 406 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT---
T ss_pred chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999998 99999999999999999999999999888889999999999999999999999999999988751
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 472 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~ 472 (489)
. ..|+.+||.+|+++++|+.++.
T Consensus 407 ---~------------~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 407 ---Q------------SSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ---C------------SSBCHHHHHHHHHSCSSSCCCC
T ss_pred ---C------------CCcCHHHHHHHHHHHhCCCCcC
Confidence 1 2499999999999999987654
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-45 Score=382.78 Aligned_cols=253 Identities=34% Similarity=0.547 Sum_probs=229.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
...+.|+++|+||+|++++|++|++.+.+|+.+|+.|... ..+++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 3457899999999999999999999999999999999876 788899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+.++|+|++++.++.+|..|+..+||||||||+|+++..|..... ......+++++||+.||++... .+|+||+|||+
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~-~~ViVIaATNr 330 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR-GDVKVIMATNK 330 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS-SSEEEEEEESC
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC-CCEEEEEeCCC
Confidence 999999999999999999999999999999999999998854332 2234567889999999988654 45899999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
|+.||+|++| ||+..|+|++||.++|.+||+.++++.....++|++.||+.|.||||+||+.+|++|++.++++
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~---- 406 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE---- 406 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT----
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----
Confidence 9999999999 9999999999999999999999999998888999999999999999999999999999998874
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
++ ..|+.+||..|++++.|+..
T Consensus 407 --~~------------~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 407 --RR------------MQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp --TC------------SCBCHHHHHHHHHHHHHHHC
T ss_pred --CC------------CccCHHHHHHHHHHHhCCCC
Confidence 11 24999999999999887654
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-45 Score=384.65 Aligned_cols=263 Identities=33% Similarity=0.575 Sum_probs=229.6
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s 276 (489)
....+.|+++|+||+|++++|+.|++.+.+|+.+|+.|... ..+++|+|||||||||||++|+++|++++.+|+.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 34556799999999999999999999999999999999875 78889999999999999999999999999999999999
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn 355 (489)
++.++|+|++++.++.+|..|+..+||||||||+|.+++.|.... .......++++.||..|||+... ..++||+|||
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~vivI~ATN 328 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL-GQTKIIMATN 328 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT-TSSEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC-CCeEEEEecC
Confidence 999999999999999999999999999999999999998875432 23334567889999999998654 4588999999
Q ss_pred CCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 356 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 356 ~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
+|+.||+|++| ||++.|+||+|+.++|.+||+.++++.....+.|++.+|+.|.||||+||..+|++|++.++++
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~--- 405 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD--- 405 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT---
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---
Confidence 99999999998 6999999999999999999999999988888999999999999999999999999999988764
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhhHHHHHHHHH
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNA 481 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~~~~y~~~~~ 481 (489)
+. ..|+.+||.+|++++.|+.. .+.+.+|.+
T Consensus 406 ---~~------------~~i~~~d~~~Al~~v~~~~k--~e~~~e~~K 436 (437)
T 4b4t_L 406 ---DR------------DHINPDDLMKAVRKVAEVKK--LEGTIEYQK 436 (437)
T ss_dssp ---TC------------SSBCHHHHHHHHHHHHHTCC-----------
T ss_pred ---CC------------CCCCHHHHHHHHHHHHhccC--cccchhhhc
Confidence 11 24999999999999988643 334444543
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.2e-46 Score=414.68 Aligned_cols=287 Identities=34% Similarity=0.613 Sum_probs=197.5
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.....|+++|++++|++++|+.|++.+.+++.+|+.|..+ ..+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 467 ~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~ 546 (806)
T 3cf2_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHH
T ss_pred ccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccch
Confidence 3445688999999999999999999999999999999876 788899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+.++|+|++++.++.+|..|+..+||||||||+|++++.|+.. ...+...++++++||.+|||+... .+|+||+|||+
T Consensus 547 l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~-~~V~vi~aTN~ 625 (806)
T 3cf2_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNR 625 (806)
T ss_dssp HHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS-SSEEEECC-CC
T ss_pred hhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC-CCEEEEEeCCC
Confidence 9999999999999999999999999999999999999988643 334556778999999999999654 45999999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
|+.||+|++| ||++.+++|+|+.++|.+||+.++++.+...++|++.||+.|+||||+||..+|++|++.++|+.+..
T Consensus 626 p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~ 705 (806)
T 3cf2_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 705 (806)
T ss_dssp SSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-
T ss_pred chhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999999999999999999998889999999999999999999999999999999986532
Q ss_pred hhhhh-------ccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhchh
Q 011305 435 LEGRQ-------EVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 486 (489)
Q Consensus 435 le~~~-------~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~~ 486 (489)
..... ...........++|+++||.+|+++++||+++ +++.|++|.+.|++.
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 706 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp ----------------------CCC----CCTTTC---------------CCCC------
T ss_pred hhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 11100 00001111223569999999999999999886 689999999988754
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-43 Score=369.41 Aligned_cols=252 Identities=37% Similarity=0.608 Sum_probs=227.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..+.|+++|+||+|++++|+.|++.+.+|+.+|+.|... ..+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 456799999999999999999999999999999999875 7888999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.++|+|++++.++.+|..|+..+||||||||+|.++..|.... .......+++++||+.|||+.... +++||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~-~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST-NVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC-SEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC-CEEEEEecCCh
Confidence 9999999999999999999999999999999999999875432 223345778999999999986544 58999999999
Q ss_pred CcccHHHHh--hcccccccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 358 WELDAAMLR--RLEKRILVP-LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~-~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
+.||+|++| ||+..|+|| +|+.++|..||+.++++.+...+.|++.+|..|.||||+||..+|++|++.++++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~---- 397 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK---- 397 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT----
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----
Confidence 999999999 999999997 8999999999999999988888999999999999999999999999999998874
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhh-CCChh
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNT-RPSAH 470 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~-~ps~~ 470 (489)
++ ..|+.+||.+|+.+. +++.+
T Consensus 398 --~~------------~~i~~~d~~~A~~~~~~~~~~ 420 (428)
T 4b4t_K 398 --NR------------YVILQSDLEEAYATQVKTDNT 420 (428)
T ss_dssp --TC------------SSBCHHHHHHHHHHHSCSCCC
T ss_pred --CC------------CCCCHHHHHHHHHHhhCccCC
Confidence 11 239999999999764 55543
No 8
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=353.38 Aligned_cols=284 Identities=48% Similarity=0.828 Sum_probs=246.9
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~~s~l 278 (489)
..+.|+++|+||+|++++|+.|++.+.+++.+++.|.+...+++++||+||||||||++|+++|+++ +.+++.++++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 3467899999999999999999999999999999998777788999999999999999999999999 899999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
.+.+.|..++.++.+|..++..+|+||||||+|.+.+.++.. ......+++++++..++++......++||++||.|+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 999999999999999999999999999999999999877653 234567889999999999876667799999999999
Q ss_pred cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011305 359 ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 437 (489)
Q Consensus 359 ~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~ 437 (489)
.++++++|||+..+++++|+.++|.+||+.++...+.. .+.+++.|++.+.||+|+||..+|++|++.++++......-
T Consensus 161 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~ 240 (322)
T 1xwi_A 161 VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 240 (322)
T ss_dssp TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEE
T ss_pred cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999877654 45678999999999999999999999999999987642110
Q ss_pred hh--c------------------------------cCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhc
Q 011305 438 RQ--E------------------------------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 484 (489)
Q Consensus 438 ~~--~------------------------------~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g 484 (489)
.. . ..+.+. ....+|+++||..|++.++||++. ++..|++|.+.||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~ 319 (322)
T 1xwi_A 241 KKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG 319 (322)
T ss_dssp EEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGG-BCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTC
T ss_pred hhhccccccccccccccccccccccccchhhcccccccccc-ccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc
Confidence 00 0 000000 012479999999999999999875 6899999999999
Q ss_pred hh
Q 011305 485 SE 486 (489)
Q Consensus 485 ~~ 486 (489)
++
T Consensus 320 ~~ 321 (322)
T 1xwi_A 320 QE 321 (322)
T ss_dssp SC
T ss_pred cC
Confidence 86
No 9
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.3e-42 Score=350.44 Aligned_cols=286 Identities=49% Similarity=0.793 Sum_probs=245.3
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.+....|+++|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 35567899999999999999999999999999999998887788899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+.+.+.|..++.++.+|..++...|+||||||+|.+.+.+... .....+++++.++..+++.......++||+|||.|
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 9999999999999999999999999999999999998876432 22335678899999999887667779999999999
Q ss_pred CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 358 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 358 ~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
+.+++++++||+..++++.|+.++|.+||+.++...+.. .+.+++.+++.+.||+++||..+|++|++.++++......
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~ 244 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEE
T ss_pred hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999887655 4567899999999999999999999999999998765421
Q ss_pred hhhc--------------------------cCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhchh
Q 011305 437 GRQE--------------------------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 486 (489)
Q Consensus 437 ~~~~--------------------------~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~~ 486 (489)
.... ..+.+ .....+||++||.+|++.++||++. ++..|++|++.||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEAD-ELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp EEECC----CCCCEEECCSSCTTEEEEEGGGSCSS-CBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhccccccccccccccccccccccccccccccc-cccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 1000 00011 1123579999999999999999875 689999999999986
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2.5e-41 Score=347.82 Aligned_cols=293 Identities=48% Similarity=0.797 Sum_probs=233.5
Q ss_pred HHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
+...+...+....++++|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 112 (355)
T 2qp9_X 33 LRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 112 (355)
T ss_dssp --------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred HHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 34445566667788999999999999999999999999999999988777889999999999999999999999999999
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
+.++++++.+.+.|..++.++.+|..++...|+||||||+|.+.+.+... .....++++++|+..|+++......++|
T Consensus 113 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 113 FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp EEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred EEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 99999999999999999999999999999999999999999998876543 3345677889999999988666667999
Q ss_pred EEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011305 351 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 351 IatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~r 429 (489)
|++||.++.++++++|||+..+++++|+.++|.+||+.++...+.. .+.+++.|++.+.||+|+||..+|++|++.+++
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~ 270 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 270 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877654 456789999999999999999999999999999
Q ss_pred HHHHHhhhhh------------cc--------------CCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHH
Q 011305 430 RLMVLLEGRQ------------EV--------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNAD 482 (489)
Q Consensus 430 R~~~~le~~~------------~~--------------~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~ 482 (489)
+......-.. .. .+.+. ....+|+++||..|++.++||++. ++..|++|.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~ 349 (355)
T 2qp9_X 271 KIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADE-LKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRD 349 (355)
T ss_dssp HHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGG-BCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhccccccccccCcCCccccchhhcccccccccc-cccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 8654210000 00 00000 112469999999999999999875 58999999999
Q ss_pred hchh
Q 011305 483 YGSE 486 (489)
Q Consensus 483 ~g~~ 486 (489)
||++
T Consensus 350 ~~~~ 353 (355)
T 2qp9_X 350 FGQE 353 (355)
T ss_dssp TC--
T ss_pred hccC
Confidence 9986
No 11
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.4e-40 Score=351.89 Aligned_cols=293 Identities=47% Similarity=0.815 Sum_probs=238.1
Q ss_pred HHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCc
Q 011305 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTT 269 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~~~ 269 (489)
+...+...+....|+++|++|+|++.+++.|++.+.+++.+++.|.....+++++||+||||||||++|+++|+++ +.+
T Consensus 116 ~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~ 195 (444)
T 2zan_A 116 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST 195 (444)
T ss_dssp --------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSE
T ss_pred HHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 3445566677788999999999999999999999999999999988766778999999999999999999999999 899
Q ss_pred EEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEE
Q 011305 270 FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 349 (489)
Q Consensus 270 ~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~vi 349 (489)
|+.++++++.+.+.|..+..++.+|..++...|+||||||+|.+.+.+.... ....+++++.|+..++++......++
T Consensus 196 ~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 196 FFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp EEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC--CGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred EEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc--ccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 9999999999999999999999999999999999999999999987765432 33456788999999998866567799
Q ss_pred EEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 350 VIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
||+|||.|+.++++++|||+..+++++|+.++|..||+.++...+.. .+.+++.|+..+.||+|+||..+|++|++.++
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~ 353 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPV 353 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876653 45678999999999999999999999999999
Q ss_pred HHHHHHhhhhh--c-------------c-----------------CCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHH
Q 011305 429 RRLMVLLEGRQ--E-------------V-----------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHR 475 (489)
Q Consensus 429 rR~~~~le~~~--~-------------~-----------------~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~ 475 (489)
++......-.. . . .+.+.. ...+||++||..|++.++||++. ++..
T Consensus 354 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~df~~a~~~~~ps~~~~~~~~ 432 (444)
T 2zan_A 354 RKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKL-LEPVVSMWDMLRSLSSTKPTVNEQDLLK 432 (444)
T ss_dssp HHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCB-CCCCEEHHHHHHHHHTCCCSCCHHHHHH
T ss_pred HHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhc-cCCccCHHHHHHHHHhCCCCCCHHHHHH
Confidence 98764310000 0 0 000101 12479999999999999999875 6899
Q ss_pred HHHHHHHhchh
Q 011305 476 YEKFNADYGSE 486 (489)
Q Consensus 476 y~~~~~~~g~~ 486 (489)
|++|++.||++
T Consensus 433 ~~~~~~~~~~~ 443 (444)
T 2zan_A 433 LKKFTEDFGQE 443 (444)
T ss_dssp HHHHTSSCTTT
T ss_pred HHHHHHHHcCC
Confidence 99999999986
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.3e-39 Score=327.25 Aligned_cols=286 Identities=34% Similarity=0.621 Sum_probs=240.8
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
+++....|+++|++|+|++.+++.|++.+.+++.+|+.|... ..+++++||+||||||||++|+++|++++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 455667899999999999999999999999999999988765 5778999999999999999999999999999999999
Q ss_pred cchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 276 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
+++.+.+.|..++.++.+|..+....|+||||||+|.+...++.... ......++++.|+..++++.. ...++||++|
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~-~~~v~vi~at 161 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT-TSSEEEEEEE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC-CCCEEEEEec
Confidence 99999999999999999999999999999999999999987643211 111234577889999998754 3458999999
Q ss_pred CCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011305 355 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 355 n~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
|.++.+++++++ ||+..++++.|+.++|.+|++.+++..+...+.+++.++..+.||+|+||..+|++|+..+.++..
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 999999999999999999999999888877788999999999999999999999999999998765
Q ss_pred HHhhhhhcc-------CCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHh
Q 011305 433 VLLEGRQEV-------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADY 483 (489)
Q Consensus 433 ~~le~~~~~-------~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~ 483 (489)
......... ...+......+|+.+||..|++.++||.+. ++..|++|.+.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 322110000 000001112469999999999999999875 589999999988
No 13
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2e-40 Score=369.82 Aligned_cols=265 Identities=34% Similarity=0.570 Sum_probs=235.6
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..+.++|+||+|+++++++|++.+.+|+.+|+.|..+ ..+++|||||||||||||++|+++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 4578999999999999999999999999999999986 788899999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcc
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~L 360 (489)
+|.|++++.++.+|..|+..+||||||||+|.++++++... ++..++++++|+..|+++.... .|+||++||+++.+
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~~-~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGGG-CEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccccC-CEEEEEecCChhhc
Confidence 99999999999999999999999999999999999876543 3345789999999999986544 58999999999999
Q ss_pred cHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 361 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 361 d~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
|++++| ||++.|+++.|+.++|.+||+.++++.....++|+..+|..|.||+|+||..+|++|++.+++|........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999 999999999999999999999999999988999999999999999999999999999999999877655433
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 439 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 439 ~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
......+.. ....|+.+||..|++.++|+..
T Consensus 434 ~~~~~~e~~-~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 434 DETIDAEVM-NSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp CCCCSHHHH-HHCEECTTHHHHHHSSSSCCCC
T ss_pred ccccchhhh-ccceeeHHHHHHHHHhCCCccc
Confidence 221111100 1124899999999999999865
No 14
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-38 Score=322.22 Aligned_cols=288 Identities=43% Similarity=0.745 Sum_probs=240.7
Q ss_pred HHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
+.+.+.+++....++++|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.++
T Consensus 66 ~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 145 (357)
T 3d8b_A 66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF 145 (357)
T ss_dssp HHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 34456777888889999999999999999999999999999998877777789999999999999999999999999999
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-CCCcEE
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVF 349 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-~~~~vi 349 (489)
+.++++++...+.|..+..++.+|..+....|+||||||+|.+...++.. ......++++.++..+++... ....++
T Consensus 146 ~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 146 FSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp EEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred EEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 99999999999999999999999999999999999999999998765432 234456788999999998753 345789
Q ss_pred EEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 350 VIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
||++||.++.+++++++||...++++.|+.++|.+|++.++...... .+.+++.+++.+.||+++||..+|++|+..++
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~i 303 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998766544 34468889999999999999999999999988
Q ss_pred HHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh-hhHHHHHHHHHHhchh
Q 011305 429 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADYGSE 486 (489)
Q Consensus 429 rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~-~~~~~y~~~~~~~g~~ 486 (489)
+++.+.... .+. .....+|+.+||..|++.++||.. ++++.|++|.+.||+.
T Consensus 304 r~l~~~~~~--~~~----~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 304 RSLQTADIA--TIT----PDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp HHCCC----------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred HHhhhhhhc--ccc----ccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 864221110 011 122356999999999999999976 4689999999999975
No 15
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=5.8e-38 Score=313.02 Aligned_cols=290 Identities=46% Similarity=0.763 Sum_probs=234.9
Q ss_pred HHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
+.+.+.+++....++++|++|+|++.+++.|.+.+..+..+++.+.+...+++++||+||||||||++|+++|++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 45566778888889999999999999999999999999999998887767789999999999999999999999999999
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC--CCcE
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELV 348 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~--~~~v 348 (489)
+.++++++.+.+.|.....++.+|..+....|+||||||+|.+...++... ......+++.++..+++.... ...+
T Consensus 83 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 83 LNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp EEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CE
T ss_pred EEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcE
Confidence 999999999999999999999999999999999999999999987764322 222356778888888876433 3568
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a 427 (489)
+||++||.++.+++++++||...++++.|+.++|..|++.++...+.. .+.+++.+++.+.|++++|+..++++|+..+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a 240 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP 240 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998776554 2345788999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhchhhc
Q 011305 428 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEIL 488 (489)
Q Consensus 428 ~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~~~~ 488 (489)
+++......... .......|+.+||..|++.++||... .+..|++|.+.||+..+
T Consensus 241 ~r~~~~~~~~~~------~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 296 (297)
T 3b9p_A 241 IRELNVEQVKCL------DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDITI 296 (297)
T ss_dssp HHTCC--------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC--------
T ss_pred HHHHhhhhcccc------cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCeec
Confidence 886432211110 11223469999999999999999765 58999999999998654
No 16
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=314.76 Aligned_cols=287 Identities=43% Similarity=0.701 Sum_probs=231.1
Q ss_pred HHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 193 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 193 ~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
..+.+.+....++++|++|+|++.+++.|.+.+..+..+++.+.....+++++||+||||||||++|+++|++++.+|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 99 NLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp TTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 34556777788999999999999999999999999999999888777778999999999999999999999999999999
Q ss_pred EeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-CCCcEEEE
Q 011305 273 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVL 351 (489)
Q Consensus 273 v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-~~~~viVI 351 (489)
++++++.+.+.|..+..++.+|..+....|+||||||+|.+...+... ......++++.|+..+++... ....++||
T Consensus 179 v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 256 (389)
T 3vfd_A 179 ISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVM 256 (389)
T ss_dssp ECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEE
T ss_pred eeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEEE
Confidence 999999999999999999999999999999999999999998765432 233356788899999987754 34568999
Q ss_pred EEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 011305 352 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430 (489)
Q Consensus 352 atTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR 430 (489)
++||.++.+++++++||...++++.|+.++|..||+.++....... +.++..++..+.|+++++|..++++|+..++++
T Consensus 257 ~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~re 336 (389)
T 3vfd_A 257 GATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336 (389)
T ss_dssp EEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred EecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998999999999999999999987765543 346788999999999999999999999998886
Q ss_pred HHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhchhh
Q 011305 431 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 487 (489)
Q Consensus 431 ~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~~~ 487 (489)
+..... ..........|+.+||..+++.++|+... .+..|++|.+.||++.
T Consensus 337 l~~~~~------~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~~ 388 (389)
T 3vfd_A 337 LKPEQV------KNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTT 388 (389)
T ss_dssp SCCC---------CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC---
T ss_pred hhhhhh------hccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCcc
Confidence 432111 11112223469999999999999999775 5899999999999864
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=299.93 Aligned_cols=261 Identities=33% Similarity=0.567 Sum_probs=206.6
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..|+++|+||+|++++|+.|++.+.+++.+++.+... ...++|++|+||||||||++++++|.+++.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 3578999999999999999999999999999988875 677788999999999999999999999999999999999988
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcc
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~L 360 (489)
.+.+..++.+..+|..++...|+++|+||+|.+...+... ......++.+.++..|++.... ..++++++||+|+.+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhccccc-CCEEEEeecCChhhC
Confidence 8888889999999999988889999999999987654321 1122345678899999988543 458899999999999
Q ss_pred cHHHHh--hcccccccCCCCHHHHHHHHHHhcCCC---CCCCCCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 361 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ---TGEESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 361 d~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~---~~~~~~dl~~La~~t--~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
|++++| ||++.++++.|+.++|.+||+.+++.. ....+.+++.++..+ +||||+||..+|++|++.++++...
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998 999999999999999999999998643 345678999999874 5999999999999999999887543
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 472 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~ 472 (489)
..... . ......|+++||++|+++++||.+++
T Consensus 240 ~~~~~------~-~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 240 RQKSG------N-EKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------------CCBCHHHHHHHHTTCCCCC---
T ss_pred hcccc------c-cccCCeecHHHHHHHHHHhcCCCChh
Confidence 21110 0 01123599999999999999998753
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=5.2e-34 Score=282.54 Aligned_cols=268 Identities=35% Similarity=0.561 Sum_probs=218.0
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
...|+++|++|+|++.+++.|.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 35678899999999999999999999999998888765 56778999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
..+.|.....+..+|..+....|+||||||+|.+.+++..... ........+..++..+++.... ..++||+|||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCch
Confidence 9999999999999999999999999999999999877654321 1223455667778888766543 4588999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.+++++++ ||+..+.++.|+.++|.+|++.++.......+.++..++..+.|++++|++.+++.|...++++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~----- 242 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL----- 242 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999988888888899999999999999999999999998876641
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh---hhHHHHHHHHHHhchhh
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH---LHAHRYEKFNADYGSEI 487 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~---~~~~~y~~~~~~~g~~~ 487 (489)
...|+.+||.+|+..+.+... ..-..|..|...||+.-
T Consensus 243 -------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
T 3h4m_A 243 -------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHH 283 (285)
T ss_dssp -------------CSSBCHHHHHHHHHHHHHHHCCC------------------
T ss_pred -------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCC
Confidence 124999999999998865433 23577899999999753
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=6e-35 Score=311.85 Aligned_cols=280 Identities=33% Similarity=0.531 Sum_probs=228.3
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
+.++|++|+|++.+++.|++.+..++.+++.+..+ ..+++++||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 56789999999999999999999999999998876 67778999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~ 362 (489)
.|+....++.+|..+....|++|||||+|.+.++++.. ..+...++++.|+..|++.... ..++||+|||.++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~~-~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCTT-SCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhccccC-CceEEEEecCCccccCH
Confidence 99999999999999999999999999999999876543 2345678899999999977543 45889999999999999
Q ss_pred HHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 363 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 363 al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
++++ ||...++++.|+.++|.+||+.++.......+.++..++..+.||+++||..+|++|+..++++.....+....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999 99999999999999999999999999888888899999999999999999999999999998864432211110
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh---HHHHHHHHHHhchhh
Q 011305 441 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSEI 487 (489)
Q Consensus 441 ~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~---~~~y~~~~~~~g~~~ 487 (489)
..+.. ......|+++||..|++.++||...+ ...-..|.+.+|-+-
T Consensus 436 ~~~~~-~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 436 TIDAE-VMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp SCCHH-HHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred ccchh-hcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 00000 00123599999999999999998765 366788999999654
No 20
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=2.3e-32 Score=290.26 Aligned_cols=261 Identities=36% Similarity=0.549 Sum_probs=215.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
.+.++|+||+|++++++++++.+.. +..+..+... ...++++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5778999999999999999998765 5567666655 5677899999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcc
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~L 360 (489)
+.|.....++.+|..+....|+||||||+|.+..+++... .......++++.|+..|+++.. ...++||++||.++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~-~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-KEGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG-GGTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-CCCEEEEEecCChhhh
Confidence 9998899999999999999999999999999988765321 1223345678999999997754 3458999999999999
Q ss_pred cHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 361 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 361 d~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
|+++++ ||+..+.++.|+.++|.+|++.+++..+...+.++..++..+.|++|+||.++|++|+..+.++ +
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~------~- 240 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE------G- 240 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------T-
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc------C-
Confidence 999988 9999999999999999999999999888777888999999999999999999999999876642 0
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhhhCCChh-------hhHHHHHHHHHHh
Q 011305 439 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-------LHAHRYEKFNADY 483 (489)
Q Consensus 439 ~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~-------~~~~~y~~~~~~~ 483 (489)
...|+.+||..|+.++.+... .....-..|++..
T Consensus 241 -----------~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G 281 (476)
T 2ce7_A 241 -----------RDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAG 281 (476)
T ss_dssp -----------CSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHH
T ss_pred -----------CCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhh
Confidence 124999999999998875422 2234455565543
No 21
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3.8e-32 Score=265.83 Aligned_cols=247 Identities=33% Similarity=0.519 Sum_probs=208.8
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
...++.+|++|+|++.+++.+.+.+.. +.+++.+... ...+++++|+||||||||++|+++|++++.+++.++++++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 456788999999999999999997765 5666665554 45678999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
..+.|..++.++.+|..+....|+++||||+|.+...++.... ......+.++.++..+++... ...++||++||.++
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPD 161 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEESCTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-CCCEEEEEeeCCch
Confidence 9999999999999999999888999999999999887653211 122334678889999998754 44588999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.+++++++ ||+..+.++.|+.++|.+|++.+++..+...+.++..++..+.||+++||..++++|+..+.++
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 235 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 235 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998887777888899999999999999999999998876653
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
+ ...|+.+||.+|++.+..
T Consensus 236 ~------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 236 N------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp T------------CSSBCHHHHHHHHHHHTT
T ss_pred C------------CCcccHHHHHHHHHHHhc
Confidence 1 124999999999998764
No 22
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=2.9e-35 Score=331.83 Aligned_cols=285 Identities=34% Similarity=0.616 Sum_probs=216.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
....+.++|++++|++++|+.|.+.+.+++.+++.+..+ ..++.++||+||||||||++|+++|++++.+++.++++++
T Consensus 468 ~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 547 (806)
T 1ypw_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSS
T ss_pred cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHh
Confidence 345678899999999999999999999999999887765 5777899999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.++|+|+.++.++.+|..++...|+||||||+|.+...+... ........+++++|+..|++.... ..++||+|||.+
T Consensus 548 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~-~~v~vI~tTN~~ 626 (806)
T 1ypw_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNRP 626 (806)
T ss_dssp TTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCCCCBSC
T ss_pred hhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc-CCeEEEEecCCc
Confidence 999999999999999999999999999999999998877543 223455678999999999988544 458899999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.+|++++| ||+..++++.|+.++|..||+.++++.+...+.+++.+++.+.|||++||..+|++|+..++++.....
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~ 706 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESE 706 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC----
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999998888888999999999999999999999999999988643211
Q ss_pred hhh-------hccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhch
Q 011305 436 EGR-------QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 485 (489)
Q Consensus 436 e~~-------~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~ 485 (489)
... .............+|+.+||.+|++..+||.+. .+..|++|.+.|+.
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 707 IRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp --------------------CCTTTTTTSSCCCCCC----------------------
T ss_pred HhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Confidence 000 000000111123469999999999999999886 58999999988653
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.98 E-value=4.7e-32 Score=264.50 Aligned_cols=247 Identities=34% Similarity=0.522 Sum_probs=191.8
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
|+++|++|+|++.+++.+++.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999998765 5666665544 56778999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch--hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcc
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~--~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~L 360 (489)
.+.....++.+|..+....|+||||||+|.+...+..... ........+..++..+++... ...++||++||.++.+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADIL 158 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC-CCCEEEEecCCChhhc
Confidence 8888889999999999888999999999999876543211 112233567788888887643 3468899999999999
Q ss_pred cHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC--HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 361 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 361 d~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d--l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
++++++ ||+..++++.|+.++|.+|++.++...+...+.+ ...++..+.|++++||..++++|+..+.++..
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~---- 234 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH---- 234 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 999999 9999999999999999999999998776654443 46789999999999999999999987765311
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
..|+.+||..|++++.++..
T Consensus 235 --------------~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 235 --------------TSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp ----------------CCBCCHHHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHhccChh
Confidence 24899999999998877654
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.97 E-value=1.7e-30 Score=277.45 Aligned_cols=260 Identities=34% Similarity=0.533 Sum_probs=216.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
+.++|++|+|+++++..+++.+.. +..+..+... ...++++||+||||||||++|+++|.+++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999998765 4566666554 56678999999999999999999999999999999999999888
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCccc
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld 361 (489)
.|.....++.+|+.+....|+|+||||+|.+...++.. ........+.++.++..|++... ...++++++||+|+.+|
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-~~~viviAatn~p~~LD 183 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILD 183 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-SCCCEEEECCSCGGGSC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-CccEEEEEecCChhhcC
Confidence 88888889999999887889999999999998765431 11233345678899999998764 34578999999999999
Q ss_pred HHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q 011305 362 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 439 (489)
Q Consensus 362 ~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~ 439 (489)
++++| ||+..+.++.|+.++|.+||+.+++......+.++..++..+.|++|+||++++++|+..+.++
T Consensus 184 ~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~--------- 254 (499)
T 2dhr_A 184 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE--------- 254 (499)
T ss_dssp TTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT---------
T ss_pred cccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---------
Confidence 99998 8999999999999999999999998877777888999999999999999999999998865432
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHhhhCCChh-------hhHHHHHHHHHHh
Q 011305 440 EVAPDDELPQIGPIRPEDVEIALKNTRPSAH-------LHAHRYEKFNADY 483 (489)
Q Consensus 440 ~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~-------~~~~~y~~~~~~~ 483 (489)
....|+.+||..|+.++.+... .+......|++..
T Consensus 255 ---------~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g 296 (499)
T 2dhr_A 255 ---------GRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAG 296 (499)
T ss_dssp ---------CCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHH
T ss_pred ---------CCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHH
Confidence 0124999999999999876532 2334555666543
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.97 E-value=8.5e-30 Score=248.66 Aligned_cols=244 Identities=36% Similarity=0.588 Sum_probs=199.6
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
+....|.++|++++|+++++..+++.... ...+..+... ...+++++|+||||||||+++++++..++.+++.+++.+
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 34567889999999999999999987765 3444444443 556678999999999999999999999999999999998
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+...+.+...+.+..+|+.+....|+++++||+|.+...+... ..........++.++..+++... ...++++++||.
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~~ 163 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNR 163 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEESC
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccCC
Confidence 8887777778888999999887788999999999998765421 11122345677889999987754 345889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
|+.+|++++| ||+..++++.|+.++|.+||+.+++......+.++..++..+.|++++||..++++|+..+.++
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~---- 239 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE---- 239 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----
Confidence 9999999998 8999999999999999999999988777777888999999999999999999999998876542
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIAL 462 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL 462 (489)
+ ...|+.+||++|+
T Consensus 240 --~------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 --G------------RRKITMKDLEEAA 253 (254)
T ss_dssp --T------------CSSBCHHHHHHHT
T ss_pred --c------------CCCcCHHHHHHHh
Confidence 0 1249999999986
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=7.4e-33 Score=272.05 Aligned_cols=253 Identities=34% Similarity=0.526 Sum_probs=205.8
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.+.++.+|++|+|++.+++.+.+.+.. +.+++.+... ...++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 456788999999999999999997764 6677776654 56678899999999999999999999999999999999998
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch--hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~--~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
..+.|.....++.+|..+....|+||||||+|.+...+..... ......++++.|+..+++.......++||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 8888877777788899998889999999999999876432110 00001124566788888776555668899999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.+++++++ ||+..+.++.|+.++|.++|+.++.......+.+++.++..+.|++|+||..++++|+..+.++
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~----- 236 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN----- 236 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS-----
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 9999999999999999999999998877777778889999999999999999999888754321
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 472 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~ 472 (489)
....|+.+||..+++.+.|+....
T Consensus 237 -------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 -------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp -------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred -------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 012499999999999999987643
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.96 E-value=2.2e-28 Score=242.22 Aligned_cols=243 Identities=37% Similarity=0.576 Sum_probs=198.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
...++++|++++|++++++.+++.+... ..+..+... ...+++++|+||||||||+++++++..++.+++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 3447889999999999999999877653 344444433 45567899999999999999999999999999999999888
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
..+.+.....+..+|+.+....|+++++||+|.+...+... ..........++.++..+++... ...++++++||.|+
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPD 189 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCTT
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCch
Confidence 77777777888999999987888999999999997654321 01122335667888889987753 34588999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.+|+++++ ||+..++++.|+.++|.+||+.+++......+.++..++..+.|++++||+.++++|+..+.++
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 263 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------ 263 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 8999999999999999999999988777777888999999999999999999999998766542
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
+ ...|+.+||++|++
T Consensus 264 ~------------~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 264 G------------RRKITMKDLEEAAS 278 (278)
T ss_dssp T------------CCSBCHHHHHHHTC
T ss_pred C------------CCCcCHHHHHHHhC
Confidence 0 12499999999863
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=8.8e-28 Score=270.86 Aligned_cols=265 Identities=34% Similarity=0.567 Sum_probs=225.6
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..+.++|++|+|++.+++.|++.+..++.+++.+..+ ..++.++||+||||||||++|+++|.+++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 4567899999999999999999999999999999887 678899999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcc
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~L 360 (489)
.+.+..+..++.+|..+....|+++||||+|.+...+... ..+..++++..|+..+++.... ..+++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~Ll~ll~g~~~~-~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC--CSHHHHHHHHHHHHHHHSSCTT-SCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc--cchHHHHHHHHHHHHhhhhccc-ccEEEecccCCchhc
Confidence 9999999999999999999999999999999998876533 2344577889999999988654 457889999999999
Q ss_pred cHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 361 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 361 d~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
++++++ ||+..+.++.|+.++|.+||+.++.......+.++..++..+.||+++|+..++++++..++++.....+..
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 999998 999999999999999999999999988888888999999999999999999999999998887643322111
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 439 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 439 ~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
....... ......++.+|+..++....|+..
T Consensus 434 ~~~~~~~-~~~~~~v~~~d~~~al~~~~~s~~ 464 (806)
T 1ypw_A 434 DETIDAE-VMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp HHHCCHH-HHTTCCCCTTHHHHHHHHSCCCCC
T ss_pred hhccchh-hhhhhhhhhhhhhccccccCchhh
Confidence 1101000 001234889999999999888643
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=8.4e-26 Score=226.05 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=134.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHH----HhcCCcEEEEchhhhHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAII 314 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~ 314 (489)
..+++++||+||||||||++|+++|++++.+++.++++++.+.+.|..+..++.+|..+ +...|+||||||+|.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 46678999999999999999999999999999999999999999999999999999988 56789999999999998
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCCCcccHHHHh--hcccccccCCCCHHHH
Q 011305 315 SQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR 382 (489)
Q Consensus 315 ~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR 382 (489)
+.+..........+.+++.|++.+|+.. ....+++||+|||.++.+|++++| ||+..+. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 8654322222234567789999988543 133468899999999999999997 8988776 5799999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHH
Q 011305 383 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL 418 (489)
Q Consensus 383 ~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~ 418 (489)
.+|++.++... +.+.+.+++.+.||++++|..
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 99999887643 566889999999999998864
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=6.8e-22 Score=197.42 Aligned_cols=213 Identities=19% Similarity=0.207 Sum_probs=162.7
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcc----cCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeccch
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTG----LLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSV 278 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~----~~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s~l 278 (489)
+|+|++.+++.+.+.+..... +..+.. ...++.++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999998876542 222211 13445689999999999999999999988 348999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
.+.+.|.....+..+|..+. ++||||||+|.+...++.. .....+++.|+..++.. ...+++|++||.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~~----~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNER----DYGQEAIEILLQVMENN---RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC---TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCcc----cccHHHHHHHHHHHhcC---CCCEEEEEeCChHH
Confidence 99999999888888888773 5899999999997554321 11245677888888732 34467888887653
Q ss_pred -----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh-------cCCcHHHHHHHHHHHHh
Q 011305 359 -----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT-------EGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 359 -----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t-------~G~sg~Di~~l~~~A~~ 425 (489)
.+++++++||+..+.|+.|+.+++..|++.++.......+.+ ++.++... ...+++++..+++.+..
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 257899999999999999999999999999997765543333 44455542 23458999999999998
Q ss_pred HHHHHHHH
Q 011305 426 QPLRRLMV 433 (489)
Q Consensus 426 ~a~rR~~~ 433 (489)
.+..|...
T Consensus 261 ~~~~r~~~ 268 (309)
T 3syl_A 261 RQANRLFT 268 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777654
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.85 E-value=9.5e-24 Score=223.69 Aligned_cols=202 Identities=21% Similarity=0.281 Sum_probs=139.3
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSK 281 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~~ 281 (489)
|...|++++|++++++.+.+.+..... ...+++++||+||||||||++|+++|++++ .+|+.++++++.++
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 556789999999999999887754321 234668999999999999999999999999 99999999999999
Q ss_pred hccchHHHHHHHHHHH---HhcCCcEEEEchhhhHHhhhcccchhhH--HHH---------------HHHHHHHHHhcCC
Q 011305 282 WRGDSEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHE--ASR---------------RLKTELLIQMDGL 341 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A---~~~~p~VL~IDEiD~l~~~r~~~~~~~~--~~~---------------~i~~~LL~~ldg~ 341 (489)
+.|.++. +..+|..| +...|+||||||+|.+.+++........ ... ++.+.++..++..
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9999887 89999999 7788999999999999988754311100 000 1123355555422
Q ss_pred -ccCCCcEEEEEEeCCCCcccHHHHh--hccc--ccccCCC--CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHH
Q 011305 342 -TQSDELVFVLAATNLPWELDAAMLR--RLEK--RILVPLP--DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS 414 (489)
Q Consensus 342 -~~~~~~viVIatTn~p~~Ld~al~r--Rf~~--~i~~~~P--d~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~ 414 (489)
...++.++|++|||.++.+++++++ ||+. .+.+|.| +.++|.+|++.+.. .|++.++..+.| |+
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQ 254 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hh
Confidence 1234556677999999999999876 9988 5566777 44778888776552 268888999999 99
Q ss_pred HHHHHHHH
Q 011305 415 DIRLVSKE 422 (489)
Q Consensus 415 Di~~l~~~ 422 (489)
|+..+|..
T Consensus 255 dl~~l~~~ 262 (456)
T 2c9o_A 255 DILSMMGQ 262 (456)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 99998854
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.84 E-value=2.9e-20 Score=190.09 Aligned_cols=221 Identities=18% Similarity=0.168 Sum_probs=155.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSK 281 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~~ 281 (489)
|..+|++++|++.+++.+......... ...+++++||+||||||||++|+++|+.++ .+++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 444599999999999987765533221 223457999999999999999999999997 48888887664332
Q ss_pred hc-------------------------------------------------cchHHHHHHHHHHHHh---------cCCc
Q 011305 282 WR-------------------------------------------------GDSEKLIKVLFELARH---------HAPS 303 (489)
Q Consensus 282 ~~-------------------------------------------------g~~~~~l~~lf~~A~~---------~~p~ 303 (489)
+. |.....++..+..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 21 1112334444433322 1267
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe-----------CCCCcccHHHHhhccccc
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT-----------NLPWELDAAMLRRLEKRI 372 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT-----------n~p~~Ld~al~rRf~~~i 372 (489)
||||||+|.+.. ..++.|+..++.. ...++++++. |.+..+++++++||.. +
T Consensus 192 vl~IDEi~~l~~-------------~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i 254 (368)
T 3uk6_A 192 VLFIDEVHMLDI-------------ESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-V 254 (368)
T ss_dssp EEEEESGGGSBH-------------HHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-E
T ss_pred eEEEhhccccCh-------------HHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-E
Confidence 999999998843 2456677777532 2235555443 2467799999999966 8
Q ss_pred ccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCC
Q 011305 373 LVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG 451 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~ 451 (489)
.+++|+.+++..|++..+.......+ ..++.+++.+.+.+++++..+++.|...+..+ + ..
T Consensus 255 ~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------~------------~~ 316 (368)
T 3uk6_A 255 STTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------K------------GT 316 (368)
T ss_dssp EECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT------T------------CS
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------C------------CC
Confidence 99999999999999988876554433 34677888887678899999999887765432 1 12
Q ss_pred CCCHHHHHHHHhhhC
Q 011305 452 PIRPEDVEIALKNTR 466 (489)
Q Consensus 452 ~It~eDf~~AL~~~~ 466 (489)
.|+.+|+.+++..+.
T Consensus 317 ~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 317 EVQVDDIKRVYSLFL 331 (368)
T ss_dssp SBCHHHHHHHHHHSB
T ss_pred CCCHHHHHHHHHHhc
Confidence 499999999998744
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.84 E-value=2.1e-20 Score=185.91 Aligned_cols=245 Identities=20% Similarity=0.221 Sum_probs=160.3
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhccc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 285 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~g~ 285 (489)
++++|++.+++.+...+..+..+....... ...+.++||+||||||||++|+++|+.++.+++.++++++.. .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 469999999999998887644333221111 234579999999999999999999999999999999998765 45443
Q ss_pred -hHHHHHHHHHHH-----HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-------CCCcEEEEE
Q 011305 286 -SEKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLA 352 (489)
Q Consensus 286 -~~~~l~~lf~~A-----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-------~~~~viVIa 352 (489)
....++.++..+ ....++||||||+|.+........ .......+++.|+..+++... ....+++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc-cchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 234455555422 112358999999999987653222 122233467788888885421 223467777
Q ss_pred E----eCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC-----------CCC--C-CCCCHHHHHHHhc-----
Q 011305 353 A----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-----------QTG--E-ESLPYDLLVERTE----- 409 (489)
Q Consensus 353 t----Tn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~-----------~~~--~-~~~dl~~La~~t~----- 409 (489)
+ ++.+..+++++++||+..+.++.|+.+++..|++..+.. ... . .+..++.+++.+.
T Consensus 174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 253 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 253 (310)
T ss_dssp EECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccc
Confidence 7 457788999999999988999999999999999953311 111 1 1112444555442
Q ss_pred --CCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 410 --GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 410 --G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
+.+.+++..+++.+...+..+. . ..+ .....|+.+|+.+++....
T Consensus 254 ~~~g~~R~l~~~l~~~~~~~~~~~------~----~~~--~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 254 TENIGARRLHTVMERLMDKISFSA------S----DMN--GQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp SCCCTTHHHHHHHHHHSHHHHHHG------G----GCT--TCEEEECHHHHHHHTCSSS
T ss_pred ccccCcHHHHHHHHHHHHhhhcCC------c----ccc--CCEEEEeeHHHHHHHHhhh
Confidence 3455666666665544322110 0 000 0111399999999998653
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.83 E-value=1.8e-19 Score=182.44 Aligned_cols=199 Identities=15% Similarity=0.118 Sum_probs=144.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+.....+.+|++++|.+.+++.+...+...... ..+..++||+||||||||++|+++|++++.+++.+++..+
T Consensus 19 ~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 19 YETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91 (338)
T ss_dssp ----CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred hhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence 445566778999999999999999988664321 1345789999999999999999999999999999999765
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc---------------
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------------- 343 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--------------- 343 (489)
. ....+...+.. ...+++|||||+|.+... .+..|+..++....
T Consensus 92 ~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 92 E------KSGDLAAILTN--LSEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp C------SHHHHHHHHHT--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCC
T ss_pred c------chhHHHHHHHh--ccCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceec
Confidence 3 12223333322 345689999999988533 34556666653320
Q ss_pred CCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHH
Q 011305 344 SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKE 422 (489)
Q Consensus 344 ~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~ 422 (489)
....+++|++||....+++++++||+..+.++.|+.+++..+++.++.......+. .++.++..+. .+++++.++++.
T Consensus 151 ~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~-G~~r~l~~~l~~ 229 (338)
T 3pfi_A 151 DLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR-STPRIALRLLKR 229 (338)
T ss_dssp CCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT-TCHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 11247899999999999999999999999999999999999999988765544332 3556666444 456777777776
Q ss_pred HHhH
Q 011305 423 AAMQ 426 (489)
Q Consensus 423 A~~~ 426 (489)
+...
T Consensus 230 ~~~~ 233 (338)
T 3pfi_A 230 VRDF 233 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 35
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.80 E-value=3.8e-20 Score=200.12 Aligned_cols=230 Identities=18% Similarity=0.151 Sum_probs=151.9
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-------
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS------- 280 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~------- 280 (489)
+++++|++++++.+.+.+.......+ .++.+++|+||||||||++|+++|..++.++..+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 46799999999999887765332222 14578999999999999999999999999999999876543
Q ss_pred --hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC------------CC
Q 011305 281 --KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS------------DE 346 (489)
Q Consensus 281 --~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~------------~~ 346 (489)
.+.|.....+...|..+....| ||||||+|.+...++. ..++.|+..++..... ..
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp ----------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred HHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 4556666666677777765665 9999999999765431 1345677777643211 14
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcC-----CCCCC---C---CCCHHHHHHHhcC-CcHH
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP-----SQTGE---E---SLPYDLLVERTEG-YSGS 414 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~-----~~~~~---~---~~dl~~La~~t~G-~sg~ 414 (489)
.+++|+|||.++.+++++++||. .+.++.|+.+++..|++.++. ..+.. . +..+..++....+ ...+
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR 302 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVR 302 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSH
T ss_pred ceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchh
Confidence 57899999999999999999995 689999999999999999872 22221 1 1224445554443 4557
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 415 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 415 Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
++++.+..+...+..+... . . .....|+.+|+.+++...+
T Consensus 303 ~L~~~i~~~~~~aa~~~~~---~------~---~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 303 SLERQLAAICRKAAKAIVA---E------E---RKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHT---T------C---CSCCEECTTTTHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHHHHh---c------C---CcceecCHHHHHHHhCCcc
Confidence 7776666655544443221 0 0 1112489999999997544
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=2.4e-19 Score=176.36 Aligned_cols=195 Identities=19% Similarity=0.226 Sum_probs=130.5
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh-hhhccch
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRGDS 286 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~-~~~~g~~ 286 (489)
.+.++|.+...+.+......... ........++.++||+||||||||++|+++|++++.+++.+++++.. +...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~--~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQ--QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHH--HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHH--HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 35677877666655553111100 00000134568999999999999999999999999999999887532 2211223
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH-HHH
Q 011305 287 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AML 365 (489)
Q Consensus 287 ~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~-al~ 365 (489)
...++.+|..+....+++|||||+|.+.+.+.... .....+++.|...+++.......++||+|||.++.+++ .+.
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~ 186 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML 186 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh---hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh
Confidence 35677888888877789999999999976543211 11245667777777766556667889999999988888 678
Q ss_pred hhcccccccCCCCH-HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCC
Q 011305 366 RRLEKRILVPLPDT-EARRAMFESLLPSQTGEESLPYDLLVERTEGY 411 (489)
Q Consensus 366 rRf~~~i~~~~Pd~-~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~ 411 (489)
+||...+.+|.++. ++...++... .. -.+.++..+++.+.|+
T Consensus 187 ~rf~~~i~~p~l~~r~~i~~i~~~~---~~-~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 187 NAFSTTIHVPNIATGEQLLEALELL---GN-FKDKERTTIAQQVKGK 229 (272)
T ss_dssp TTSSEEEECCCEEEHHHHHHHHHHH---TC-SCHHHHHHHHHHHTTS
T ss_pred cccceEEcCCCccHHHHHHHHHHhc---CC-CCHHHHHHHHHHhcCC
Confidence 89988888877665 4444554432 11 1233456667777665
No 37
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.79 E-value=4.6e-19 Score=181.87 Aligned_cols=220 Identities=19% Similarity=0.283 Sum_probs=150.0
Q ss_pred cccCcHHHHHHHHHHHHccccCchhh---cccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh-hccc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYF---TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGD 285 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~---~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~-~~g~ 285 (489)
.|+|++.+++.+...+.......... .....++.++||+||||||||++|+++|+.++.+|+.++++++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 47999999999998885433222111 1112356899999999999999999999999999999999988743 6665
Q ss_pred h-HHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhH-HHHHHHHHHHHHhcCCc-----------------
Q 011305 286 S-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGLT----------------- 342 (489)
Q Consensus 286 ~-~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~-~~~~i~~~LL~~ldg~~----------------- 342 (489)
. ...+..++..+ ....++||||||+|.+...+........ ..+.+++.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 4 45566676654 3345689999999999887654332222 23458899999998531
Q ss_pred -cCCCcEEEEEEeCCC----------Cc-----------------------------------ccHHHHhhcccccccCC
Q 011305 343 -QSDELVFVLAATNLP----------WE-----------------------------------LDAAMLRRLEKRILVPL 376 (489)
Q Consensus 343 -~~~~~viVIatTn~p----------~~-----------------------------------Ld~al~rRf~~~i~~~~ 376 (489)
-...++++|+++|.. .. +.+++.+||+..+.+++
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 012334555565532 01 68999999999999999
Q ss_pred CCHHHHHHHHHHhcC-----------CCCCC---CCCCHHHHHH--HhcCCcHHHHHHHHHHHHhHHHH
Q 011305 377 PDTEARRAMFESLLP-----------SQTGE---ESLPYDLLVE--RTEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 377 Pd~~eR~~IL~~~l~-----------~~~~~---~~~dl~~La~--~t~G~sg~Di~~l~~~A~~~a~r 429 (489)
|+.+++.+|+...+. ..... .+..++.|++ ....+..++|+++++++...++.
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~ 324 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMY 324 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHH
Confidence 999999999987221 11111 1122455554 23455668888888877766544
No 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.77 E-value=3.4e-18 Score=171.50 Aligned_cols=196 Identities=18% Similarity=0.165 Sum_probs=141.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
...+.+|++++|.+.+++.+.+.+...... ..++.++||+||||||||++|++++++++.+++.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 455668999999999999999887653211 124578999999999999999999999999999999876532
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------cCCC
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDE 346 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~---------------~~~~ 346 (489)
...+...+..+ ...+++|||||+|.+... .+..|+..++... ....
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 12222222221 145689999999988533 2334444444221 0112
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHh
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~ 425 (489)
.+.+|++||.+..+++++.+||...+.++.|+.+++..+++.++...+...+. .++.++..+.| +++++..+++.+..
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 47789999999999999999998889999999999999999988765544332 35667777654 55777777766543
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.76 E-value=3.6e-17 Score=153.03 Aligned_cols=204 Identities=18% Similarity=0.150 Sum_probs=140.9
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEec
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 275 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~ 275 (489)
...++..|++++|.+..++.+.+.+... ...+++|+||||||||++++++++++ ...++.+++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 3456778999999999999999887541 22459999999999999999999986 466888887
Q ss_pred cchhhhhccchHHHHHHHHHHHH------hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEE
Q 011305 276 SSVVSKWRGDSEKLIKVLFELAR------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 349 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~vi 349 (489)
++..+. ..+...+.... ...+.+|+|||+|.+... ..+.|+..++. ....+.
T Consensus 77 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~---~~~~~~ 134 (226)
T 2chg_A 77 SDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCR 134 (226)
T ss_dssp TCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTTEE
T ss_pred ccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-------------HHHHHHHHHHh---cCCCCe
Confidence 654321 12222222221 245789999999988532 23345555543 233467
Q ss_pred EEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 350 VIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
+|++||.+..+++++.+||. .+.++.|+.++...++...+...+...+ ..+..+++.+.| +++.+..+++.++..+
T Consensus 135 ~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 135 FILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 78899999999999999997 7999999999999999988765444322 234556665544 3444444443332210
Q ss_pred HHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 429 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 429 rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
..|+.+|+++++.
T Consensus 212 ----------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----------------------EVVDADTIYQITA 224 (226)
T ss_dssp ----------------------SCBCHHHHHHHHH
T ss_pred ----------------------ceecHHHHHHHhc
Confidence 2499999999886
No 40
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.76 E-value=1.9e-17 Score=173.76 Aligned_cols=177 Identities=24% Similarity=0.346 Sum_probs=134.2
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhccc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 285 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~g~ 285 (489)
++|+|++++|+.|...+..+..++..+... ..+++++||+||||||||++|+++|+.++.+++.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 479999999999999988876666555443 235689999999999999999999999999999999998887 58884
Q ss_pred -hHHHHHHHHHHHH------------------------------------------------------------------
Q 011305 286 -SEKLIKVLFELAR------------------------------------------------------------------ 298 (489)
Q Consensus 286 -~~~~l~~lf~~A~------------------------------------------------------------------ 298 (489)
.+..++.+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 6666666554430
Q ss_pred -------------------------------------------------------------------------hcCCcEE
Q 011305 299 -------------------------------------------------------------------------HHAPSTI 305 (489)
Q Consensus 299 -------------------------------------------------------------------------~~~p~VL 305 (489)
....+||
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 0012589
Q ss_pred EEchhhhHHhhhcccchhhHHHH-HHHHHHHHHhcCCcc-------CCCcEEEEEEe----CCCCcccHHHHhhcccccc
Q 011305 306 FLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRIL 373 (489)
Q Consensus 306 ~IDEiD~l~~~r~~~~~~~~~~~-~i~~~LL~~ldg~~~-------~~~~viVIatT----n~p~~Ld~al~rRf~~~i~ 373 (489)
++||+|.+...... ...+.+. -++..||..+++... ..+++++|||. +.|..+.|++++||+.++.
T Consensus 255 ~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~ 332 (444)
T 1g41_A 255 FIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVE 332 (444)
T ss_dssp EEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEE
T ss_pred eHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeee
Confidence 99999999865332 1233333 478899999997421 34568888887 3555567899999999999
Q ss_pred cCCCCHHHHHHHHH
Q 011305 374 VPLPDTEARRAMFE 387 (489)
Q Consensus 374 ~~~Pd~~eR~~IL~ 387 (489)
++.++.++..+|+.
T Consensus 333 l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 333 LTALSAADFERILT 346 (444)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999999994
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.75 E-value=2.3e-17 Score=166.33 Aligned_cols=198 Identities=22% Similarity=0.229 Sum_probs=133.2
Q ss_pred CCCCCCcccc-C--cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 203 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 203 ~~~~~~~dli-G--~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+..+|++++ | ...+...+...+..+ ...+.+++|+||||||||++|+++++++ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4567899997 4 445555566554432 1234789999999999999999999998 8999999998
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
++...+.+.........|.... ..+++|||||++.+..+.. .+..++..++..... +..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~-----------~~~~l~~~l~~~~~~-~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKER-----------TQIEFFHIFNTLYLL-EKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCHH-----------HHHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCChH-----------HHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 8766554433222222232222 2368999999999865311 122233333322222 23556666666
Q ss_pred CC---cccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011305 357 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQ 426 (489)
Q Consensus 357 p~---~Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~ 426 (489)
+. .+++++.+||. ..+.+++ +.+++..|++..+...+...+. .++.++..+ .+.+++..++..+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 65 58999999996 5688888 9999999999998765554333 356677777 4667777777665544
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.75 E-value=3.6e-17 Score=172.43 Aligned_cols=222 Identities=16% Similarity=0.243 Sum_probs=147.1
Q ss_pred CCCCCCcccc-Cc--HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 011305 203 SPDVKWESIK-GL--ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 274 (489)
Q Consensus 203 ~~~~~~~dli-G~--e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~ 274 (489)
.+..+|++++ |. ..+...+......+ .. +.+++|+||||||||++|+++++++ +.++++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4566899987 54 33444444443321 11 4689999999999999999999988 88999999
Q ss_pred ccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 275 ~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
+.++...+.+.........|.......+.||||||++.+.... ..+..++..++..... +..+|+++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-----------~~q~~l~~~l~~l~~~-~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-----------GVQTELFHTFNELHDS-GKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-----------HHHHHHHHHHHHHHTT-TCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence 9887655443222211122333333367999999999986431 1223344444332222 234455444
Q ss_pred CCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 355 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 355 n~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
+.+.. +++++++||. ..+.++.|+.++|..|++..+...+...+. .++.++..+.| +.+++..+++.+...+.
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 44554 8899999996 788999999999999999988655544333 36777877764 77888888877665432
Q ss_pred HHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 429 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 429 rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
. . ..+||.+++.++++...+
T Consensus 315 ~------~-------------~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 315 T------T-------------GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp H------S-------------SSCCCHHHHHHHTSTTTC
T ss_pred H------h-------------CCCCCHHHHHHHHHHHhh
Confidence 1 1 124888889888887764
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=2.1e-17 Score=174.51 Aligned_cols=215 Identities=21% Similarity=0.257 Sum_probs=140.3
Q ss_pred cCCCCCCCccccCcHHHH---HHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 201 RGSPDVKWESIKGLENAK---RLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k---~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
....+.+|++++|++.++ +.|...+... ...++||+||||||||++|+++++.++.+++.+++..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 345667899999999999 6777766541 1268999999999999999999999999999998754
Q ss_pred hhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 278 VVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
. ..+.++.++..+. ...++||||||+|.+... .++.|+..++. .. +++|++
T Consensus 86 ~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~~-v~lI~a 140 (447)
T 3pvs_A 86 S-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----GT-ITFIGA 140 (447)
T ss_dssp C-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TS-CEEEEE
T ss_pred C-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----Cc-eEEEec
Confidence 3 2233455555444 345789999999988543 23456777763 23 445555
Q ss_pred e-CCC-CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCC-------CCC-CCHHHHHHHhcCCcHHHHHHHHHHH
Q 011305 354 T-NLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG-------EES-LPYDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 354 T-n~p-~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~-------~~~-~dl~~La~~t~G~sg~Di~~l~~~A 423 (489)
| .++ ..+++++++||. .+.++.|+.+++..+++..+..... ..+ ..++.++..+.| ..+++.++++.+
T Consensus 141 tt~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a 218 (447)
T 3pvs_A 141 TTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMM 218 (447)
T ss_dssp ESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred CCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4 333 579999999995 6789999999999999998865221 111 124445555443 334444444433
Q ss_pred HhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 424 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 424 ~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
... ..... .....||.+++.+++....+...
T Consensus 219 ~~~---------------a~~~~-~~~~~It~e~v~~~l~~~~~~~d 249 (447)
T 3pvs_A 219 ADM---------------AEVDD-SGKRVLKPELLTEIAGERSARFD 249 (447)
T ss_dssp HHH---------------SCBCT-TSCEECCHHHHHHHHTCCCCC--
T ss_pred HHh---------------ccccc-CCCCccCHHHHHHHHhhhhhccC
Confidence 321 11000 01134999999999987765443
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=6.8e-18 Score=169.93 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=118.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+..++.+.+|++++|++.+++.+++++.. ...++.+|++||||||||++|+++|++++.+++++++++.
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred HHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 44456778899999999999999988763 1334678889999999999999999999999999998764
Q ss_pred hhhhccchHHHHHHHHHHHHhc-----CCcEEEEchhhhHH-hhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEE
Q 011305 279 VSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAII-SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 352 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~-----~p~VL~IDEiD~l~-~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIa 352 (489)
. ...++..+...... .+.||+|||+|.+. .. .++.|+..++.. ...+.+|+
T Consensus 85 ~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~-------------~~~~L~~~le~~---~~~~~iI~ 141 (324)
T 3u61_B 85 K-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE-------------SQRHLRSFMEAY---SSNCSIII 141 (324)
T ss_dssp C-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH-------------HHHHHHHHHHHH---GGGCEEEE
T ss_pred C-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH-------------HHHHHHHHHHhC---CCCcEEEE
Confidence 2 23344433332222 46899999999985 22 334566666532 23466888
Q ss_pred EeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 353 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 353 tTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
+||.+..+++++++||. .+.|+.|+.++|.+|++.++
T Consensus 142 ~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 142 TANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp EESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHH
T ss_pred EeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999995 69999999999877665543
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.74 E-value=9.8e-18 Score=158.55 Aligned_cols=207 Identities=21% Similarity=0.241 Sum_probs=145.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
...+.+..|++++|.+..++.+.+.+... ..++.++|+||||||||++++++++.++..
T Consensus 14 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 14 ARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 34456677999999999999999887541 233579999999999999999999987432
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.++... ......+..++.... ...+.+|+|||+|.+... ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~-------------~~ 143 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SF 143 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------HH
T ss_pred cHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-------------HH
Confidence 22222211 012233444444332 234689999999987322 34
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
+.|+..++.. ...+.+|++|+.+..+++++.+|+ ..+.++.|+.++..++++.++...+...+ ..++.+++.+.|
T Consensus 144 ~~l~~~l~~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 219 (250)
T 1njg_A 144 NALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 219 (250)
T ss_dssp HHHHHHHHSC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 5566666532 345778889999989999999997 67999999999999999988865544322 236678888866
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 411 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 411 ~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
+++.+..+++.+...+ ...||.+|+++++.
T Consensus 220 -~~~~~~~~~~~~~~~~----------------------~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 220 -SLRDALSLTDQAIASG----------------------DGQVSTQAVSAMLG 249 (250)
T ss_dssp -CHHHHHHHHHHHHTTT----------------------TSSBCHHHHHHHSC
T ss_pred -CHHHHHHHHHHHHhcc----------------------CceecHHHHHHHhC
Confidence 7778877777653210 01499999998863
No 46
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.74 E-value=7.2e-17 Score=153.75 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=138.1
Q ss_pred CCCCCccccCc---HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 204 PDVKWESIKGL---ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 204 ~~~~~~dliG~---e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
+..+|++++|. +.+.+.+...+.. ..+.+++|+||||||||++|+++++++ +.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 34689999972 4666666665532 234789999999999999999999987 47889999888
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+........ . ....+.+|+|||+|.+..... ....++..++.........+|++++..+
T Consensus 91 ~~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~~~-----------~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 91 HASISTALL--------E--GLEQFDLICIDDVDAVAGHPL-----------WEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGSCGGGG--------T--TGGGSSEEEEETGGGGTTCHH-----------HHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHHHH--------H--hccCCCEEEEeccccccCCHH-----------HHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 765432111 1 113468999999998854321 1223333333222222222445444444
Q ss_pred C---cccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 358 W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 358 ~---~Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
. .+++++.+||. ..+.++.|+.+++.+++..++...+...+. .++.+++.+.| +.+++..+++.+...+..+
T Consensus 150 ~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~- 227 (242)
T 3bos_A 150 MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH- 227 (242)
T ss_dssp TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh-
Confidence 3 45689999996 789999999999999999988755544333 35667776654 6777777777666544221
Q ss_pred HHHhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 432 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 432 ~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
.+.||.+|++++++
T Consensus 228 ------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 ------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp ------------------TCCCCHHHHHHHHT
T ss_pred ------------------CCCCcHHHHHHHhh
Confidence 02499999999885
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=1.8e-17 Score=165.31 Aligned_cols=208 Identities=22% Similarity=0.258 Sum_probs=143.5
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh---
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 282 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~--- 282 (489)
++++|++.+++.+...+....... .....+..++||+||||||||++|+++|+.+ +.+++.++++.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 478999999999998886642110 0112344689999999999999999999998 6779999998764321
Q ss_pred --ccchH----HH-HHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC--------CCc
Q 011305 283 --RGDSE----KL-IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--------DEL 347 (489)
Q Consensus 283 --~g~~~----~~-l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~--------~~~ 347 (489)
.|... .. ...+........++||||||+|.+.. .+++.|+..++..... -.+
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 11000 00 01222333334458999999998843 2556677777643211 135
Q ss_pred EEEEEEeCC--------------------------CCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCC-------
Q 011305 348 VFVLAATNL--------------------------PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT------- 394 (489)
Q Consensus 348 viVIatTn~--------------------------p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~------- 394 (489)
+++|+|||. ...+++++++||+..+.+++|+.+++..|++.++....
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 778999998 44688899999999999999999999999999885421
Q ss_pred CC---CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHHH
Q 011305 395 GE---ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 395 ~~---~~~dl~~La~~t~--G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
.. .+..++.+++... ..+.++++.+++.+...++.+.+
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 11 1223455666554 57789999999998887776644
No 48
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.73 E-value=7.5e-18 Score=173.57 Aligned_cols=243 Identities=18% Similarity=0.219 Sum_probs=146.3
Q ss_pred cccCcHHHHHHHHHHHHccccCchh------------------hcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~------------------~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.|+|++.+|+.|...+..+..+... ......++.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6899999999999887543322211 1112345678999999999999999999999999999
Q ss_pred EEeccchh-hhhccch-HHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHH-HHHHHHHHHHHhcCCc--
Q 011305 272 NISASSVV-SKWRGDS-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLT-- 342 (489)
Q Consensus 272 ~v~~s~l~-~~~~g~~-~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~-~~~i~~~LL~~ldg~~-- 342 (489)
.+++..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.......+. ...+++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444432 344555554322 2356899999999998764322111111 1236788888888541
Q ss_pred ----------------cCCCcEEEEEEeCC-----------------------------------------CCcccHHHH
Q 011305 343 ----------------QSDELVFVLAATNL-----------------------------------------PWELDAAML 365 (489)
Q Consensus 343 ----------------~~~~~viVIatTn~-----------------------------------------p~~Ld~al~ 365 (489)
-...++++|+++|. ...+.+++.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 01134567777762 012568889
Q ss_pred hhcccccccCCCCHHHHHHHHHHhcCC-----------CC--CCC-CCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHH
Q 011305 366 RRLEKRILVPLPDTEARRAMFESLLPS-----------QT--GEE-SLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 366 rRf~~~i~~~~Pd~~eR~~IL~~~l~~-----------~~--~~~-~~dl~~La~~t~--G~sg~Di~~l~~~A~~~a~r 429 (489)
+||+..+.|+.++.++...|+...+.. .. ... +..++.|++... ....+.+..++..+...++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 999888999999999999998742211 11 111 112444555532 34567777777776665544
Q ss_pred HHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhh
Q 011305 430 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKN 464 (489)
Q Consensus 430 R~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~ 464 (489)
+.... . .....||.+++..+++.
T Consensus 342 ~~~~~----------~--~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 342 DLPKL----------K--GSEVRITKDCVLKQAEP 364 (376)
T ss_dssp TGGGG----------T--TSEEEECHHHHTTSSCC
T ss_pred hccCC----------C--CCEEEEeHHHhcCCCCc
Confidence 32110 0 01123899998875543
No 49
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.73 E-value=1.8e-16 Score=161.70 Aligned_cols=226 Identities=20% Similarity=0.177 Sum_probs=150.7
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEec
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISA 275 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~ 275 (489)
....++++|.+..++.+...+...+. ...+.+++|+||||||||++++++++++ +.+++.+++
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 33458999999999999987754321 1345789999999999999999999988 888999998
Q ss_pred cchhhhh----------------ccc-hHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011305 276 SSVVSKW----------------RGD-SEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (489)
Q Consensus 276 s~l~~~~----------------~g~-~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ 337 (489)
....+.+ .+. .......++..... ..|.||+|||+|.+...+. ....+..++..
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~--------~~~~l~~l~~~ 158 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPG--------GQDLLYRITRI 158 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTT--------HHHHHHHHHHG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCC--------CChHHHhHhhc
Confidence 7533211 121 22334444444433 3367999999999965420 12344455554
Q ss_pred hcCCccCCCcEEEEEEeCCC---CcccHHHHhhccc-ccccCCCCHHHHHHHHHHhcCC--CCCC-CCCCHHHHHHHhc-
Q 011305 338 MDGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPS--QTGE-ESLPYDLLVERTE- 409 (489)
Q Consensus 338 ldg~~~~~~~viVIatTn~p---~~Ld~al~rRf~~-~i~~~~Pd~~eR~~IL~~~l~~--~~~~-~~~dl~~La~~t~- 409 (489)
++.... ...+.+|++||.+ ..+++++.+||.. .+.+++|+.++...|++..+.. .... .+..++.+++.+.
T Consensus 159 ~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (387)
T 2v1u_A 159 NQELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAR 237 (387)
T ss_dssp GGCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHS
T ss_pred hhhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 442210 3457788889887 6789999999975 8999999999999999988753 1222 2333566777776
Q ss_pred --CCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 410 --GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 410 --G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
| .++.+..+++.++..+..+ + ...|+.+|+..++....
T Consensus 238 ~~G-~~r~~~~~l~~a~~~a~~~------~------------~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 238 EHG-DARRALDLLRVAGEIAERR------R------------EERVRREHVYSARAEIE 277 (387)
T ss_dssp SSC-CHHHHHHHHHHHHHHHHHT------T------------CSCBCHHHHHHHHHHHH
T ss_pred hcc-CHHHHHHHHHHHHHHHHHc------C------------CCCcCHHHHHHHHHHHh
Confidence 4 4566667777765543221 0 12388888888877653
No 50
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.73 E-value=6.3e-18 Score=154.54 Aligned_cols=162 Identities=21% Similarity=0.333 Sum_probs=116.4
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEE
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFF 271 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i 271 (489)
...+..|++++|.++..+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 33456799999999999988887643 234789999999999999999999987 78899
Q ss_pred EEeccchh--hhhccchHHHHHHHHHHHH-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcE
Q 011305 272 NISASSVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 348 (489)
Q Consensus 272 ~v~~s~l~--~~~~g~~~~~l~~lf~~A~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~v 348 (489)
.+++.++. ..+.+.....+..++.... ...+.||+|||+|.+......... ..+.+.+...++ ...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~-----~~~~~~l~~~~~-----~~~~ 152 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-----MDAGNMLKPALA-----RGEL 152 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C-----CCCHHHHHHHHH-----TTSC
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch-----HHHHHHHHHhhc-----cCCe
Confidence 99988775 3344556666777777554 345779999999999755321100 111222333332 1235
Q ss_pred EEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHH
Q 011305 349 FVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMF 386 (489)
Q Consensus 349 iVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL 386 (489)
.+|++||.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 153 ~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 153 HCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 6777888775 68999999997 5999999999998875
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=2.8e-16 Score=159.00 Aligned_cols=216 Identities=14% Similarity=0.121 Sum_probs=143.5
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC------CcEE
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------TTFF 271 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~------~~~i 271 (489)
.+..++++.+|++++|++++++.+...+... ...++||+||||||||++|+++++.++ ..++
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 3455667888999999999999998876431 123599999999999999999999864 4588
Q ss_pred EEeccchhhhhccchHHHHHHHHHHHH----------------hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHH
Q 011305 272 NISASSVVSKWRGDSEKLIKVLFELAR----------------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 335 (489)
Q Consensus 272 ~v~~s~l~~~~~g~~~~~l~~lf~~A~----------------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL 335 (489)
.+++++..+. ..++..+.... ...+.||+|||+|.+... ..+.|+
T Consensus 94 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------~~~~Ll 154 (353)
T 1sxj_D 94 ELNASDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALR 154 (353)
T ss_dssp EECSSSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHH
T ss_pred EEccccccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------HHHHHH
Confidence 8887764211 11111111111 123469999999988543 235566
Q ss_pred HHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHH
Q 011305 336 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGS 414 (489)
Q Consensus 336 ~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~ 414 (489)
..++.. .....+|++||.+..+.+++++||. .+.++.|+.++...+++..+...+...+ ..++.+++.+.|. .+
T Consensus 155 ~~le~~---~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r 229 (353)
T 1sxj_D 155 RTMETY---SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LR 229 (353)
T ss_dssp HHHHHT---TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HH
T ss_pred HHHHhc---CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HH
Confidence 666533 2235566788999999999999995 7899999999999999988766554433 2356677777753 44
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 415 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 415 Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
.+..+++.++..+-+ .. ....||.+|+.+++....
T Consensus 230 ~~~~~l~~~~~~~~~---------~~--------~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 230 RGITLLQSASKGAQY---------LG--------DGKNITSTQVEELAGVVP 264 (353)
T ss_dssp HHHHHHHHTHHHHHH---------HC--------SCCCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCC---------Cc--------cCccccHHHHHHHhCCCC
Confidence 444444444332111 00 001388888888776443
No 52
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=5.8e-17 Score=174.16 Aligned_cols=207 Identities=19% Similarity=0.162 Sum_probs=132.9
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccC-chhhccc----CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~-~~~~~~~----~~~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
..+.+++.+.+|++|+|++.+++.|.+++...... +..+... ..+++++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 34556677889999999999999999988763321 1222221 124579999999999999999999999999999
Q ss_pred EEeccchhhhhccchH-------HHHHHHHHHH-----HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011305 272 NISASSVVSKWRGDSE-------KLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (489)
Q Consensus 272 ~v~~s~l~~~~~g~~~-------~~l~~lf~~A-----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld 339 (489)
.++++++......... ..+..+|..+ ....++||||||+|.+....+. .+..|+..++
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~----------~l~~L~~~l~ 176 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG----------GVGQLAQFCR 176 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT----------HHHHHHHHHH
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH----------HHHHHHHHHH
Confidence 9999876543221000 0011222222 1245789999999998754221 2344555554
Q ss_pred CCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHH
Q 011305 340 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRL 418 (489)
Q Consensus 340 g~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~ 418 (489)
. ....+++++++.....+. .+.+|+ ..+.|+.|+.+++.+++...+...+...+ ..+..+++.+.| |++.
T Consensus 177 ~---~~~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G----diR~ 247 (516)
T 1sxj_A 177 K---TSTPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQ 247 (516)
T ss_dssp H---CSSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHH
T ss_pred h---cCCCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHH
Confidence 2 223344444433333444 355555 68999999999999999887765554433 346777777654 4444
Q ss_pred HHHH
Q 011305 419 VSKE 422 (489)
Q Consensus 419 l~~~ 422 (489)
+++.
T Consensus 248 ~i~~ 251 (516)
T 1sxj_A 248 VINL 251 (516)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 53
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.69 E-value=1.3e-16 Score=161.19 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=109.1
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc------hhh
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVS 280 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~------l~~ 280 (489)
.+++++|++.+++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++.. +.+
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 467999999999988876643 258999999999999999999999999999998741 221
Q ss_pred hhccchHHHHHHHHHHHHhcC---CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCcEE
Q 011305 281 KWRGDSEKLIKVLFELARHHA---PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVF 349 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~---p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~vi 349 (489)
....... ...+ ..... .+||||||+|.+.+. .++.|+..++... ..+..++
T Consensus 91 ~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~ 152 (331)
T 2r44_A 91 TMIYNQH---KGNF--EVKKGPVFSNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPFL 152 (331)
T ss_dssp EEEEETT---TTEE--EEEECTTCSSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSCE
T ss_pred ceeecCC---CCce--EeccCcccccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCEE
Confidence 1110000 0000 00111 279999999987433 3455666555221 1234567
Q ss_pred EEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC
Q 011305 350 VLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 350 VIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
||+|+|..+ .+++++++||...+.++.|+.+++.+|++..+...
T Consensus 153 viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 153 VLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred EEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccC
Confidence 777887443 38999999998889999999999999999987653
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.69 E-value=5.8e-17 Score=172.18 Aligned_cols=191 Identities=20% Similarity=0.276 Sum_probs=132.2
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 266 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el--------- 266 (489)
..++.....+.++++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l 234 (468)
T 3pxg_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL 234 (468)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhh
Confidence 34455556677899999999999998887643 223689999999999999999999997
Q ss_pred -CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 267 -KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 267 -~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
+.+++.++++ +.+.|..+..++.+|..+....|+||||| .. ....+.|+..++ .
T Consensus 235 ~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~-----------~~a~~~L~~~L~-----~ 289 (468)
T 3pxg_A 235 RDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA-----R 289 (468)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT-----S
T ss_pred cCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc-----------hhHHHHHHHhhc-----C
Confidence 7889999887 66778777888999999998888999999 11 112233433332 2
Q ss_pred CcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCC----CCC-CCCHHHHHHHhcCCc---
Q 011305 346 ELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT----GEE-SLPYDLLVERTEGYS--- 412 (489)
Q Consensus 346 ~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~----~~~-~~dl~~La~~t~G~s--- 412 (489)
+.+.+|++||.+. .+++++.+||.. +.++.|+.+++..|++.++.... ... +..+..++..+.+|.
T Consensus 290 g~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~ 368 (468)
T 3pxg_A 290 GELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (468)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred CCEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Confidence 3477888998886 589999999974 99999999999999999887633 221 223555666655444
Q ss_pred --HHHHHHHHHHHH
Q 011305 413 --GSDIRLVSKEAA 424 (489)
Q Consensus 413 --g~Di~~l~~~A~ 424 (489)
+.....++.+|.
T Consensus 369 ~lp~~ai~ll~~a~ 382 (468)
T 3pxg_A 369 FLPDKAIDLIDEAG 382 (468)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHH
Confidence 345556666555
No 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=9.2e-16 Score=157.03 Aligned_cols=214 Identities=20% Similarity=0.172 Sum_probs=143.1
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----------CCcEEEEecc
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----------KTTFFNISAS 276 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----------~~~~i~v~~s 276 (489)
.++++|.+..++.+.+.+..... ...+++++|+||||||||++|+++++++ +.+++.+++.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 37899999999999988765432 1335689999999999999999999988 8999999987
Q ss_pred chh-hh----------h-------ccc-hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHH-HHHHHH
Q 011305 277 SVV-SK----------W-------RGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-KTELLI 336 (489)
Q Consensus 277 ~l~-~~----------~-------~g~-~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i-~~~LL~ 336 (489)
+.. .. . .+. ....+..++.......+ ||+|||+|.+...... .. +..|+.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~---------~~~l~~l~~ 160 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGG---------DIVLYQLLR 160 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTS---------HHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCC---------ceeHHHHhc
Confidence 543 11 0 111 13334455554444443 9999999999654211 12 233332
Q ss_pred HhcCCccCCCcEEEEEEeCCC---CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC--CCCCC-CCCHHHHHHHhcC
Q 011305 337 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS--QTGEE-SLPYDLLVERTEG 410 (489)
Q Consensus 337 ~ldg~~~~~~~viVIatTn~p---~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~--~~~~~-~~dl~~La~~t~G 410 (489)
.. ..+.+|++||.+ ..+++++.+||...+.+++|+.++..++++..+.. ..... +..++.+++.+.+
T Consensus 161 ~~-------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 161 SD-------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp SS-------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred CC-------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 11 457888899887 67899999999779999999999999999997752 11122 2235566666652
Q ss_pred --CcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 411 --YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 411 --~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
-..+.+..+++.|+..+. ....|+.+|+..++....
T Consensus 234 ~~G~~r~a~~~l~~a~~~a~--------------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHGDARKAVNLLFRAAQLAS--------------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCCCHHHHHHHHHHHHHHTT--------------------SSSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhc--------------------CCCccCHHHHHHHHHHHh
Confidence 223344445554433211 012488899988887764
No 56
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.68 E-value=3.4e-16 Score=158.38 Aligned_cols=160 Identities=21% Similarity=0.279 Sum_probs=102.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------c------
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------T------ 269 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-------~------ 269 (489)
.++.+|++++|++.+++.+....... ...++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46678999999999887765433221 1246999999999999999999999863 2
Q ss_pred --------------------EEEEeccchhhhhccchHHHHHHHHHHH---------HhcCCcEEEEchhhhHHhhhccc
Q 011305 270 --------------------FFNISASSVVSKWRGDSEKLIKVLFELA---------RHHAPSTIFLDEIDAIISQRGEA 320 (489)
Q Consensus 270 --------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A---------~~~~p~VL~IDEiD~l~~~r~~~ 320 (489)
++.+..........|... +...+..+ ....++||||||+|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~---- 159 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH---- 159 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH----
Confidence 222221111111111100 01111111 1113589999999988543
Q ss_pred chhhHHHHHHHHHHHHHhcCC----cc------CCCcEEEEEEeCCCC-cccHHHHhhcccccccCCC-CHHHHHHHHHH
Q 011305 321 RSEHEASRRLKTELLIQMDGL----TQ------SDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRAMFES 388 (489)
Q Consensus 321 ~~~~~~~~~i~~~LL~~ldg~----~~------~~~~viVIatTn~p~-~Ld~al~rRf~~~i~~~~P-d~~eR~~IL~~ 388 (489)
.++.|+..++.- .. .+..+++|+|||... .+++++++||...+.++.| +.+++.+|++.
T Consensus 160 ---------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 160 ---------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ---------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 344566655421 11 112588899999744 7999999999888999998 67778788877
Q ss_pred h
Q 011305 389 L 389 (489)
Q Consensus 389 ~ 389 (489)
.
T Consensus 231 ~ 231 (350)
T 1g8p_A 231 R 231 (350)
T ss_dssp H
T ss_pred H
Confidence 4
No 57
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.68 E-value=2.3e-16 Score=157.09 Aligned_cols=181 Identities=20% Similarity=0.194 Sum_probs=127.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v 273 (489)
+..++.+.+|++++|++.+++.+...+.. ....++||+||||||||++|+++++.+ +.+++.+
T Consensus 7 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 74 (319)
T 2chq_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (319)
T ss_dssp TTTTTSCSSGGGSCSCHHHHHHHHTTTTT------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEE
T ss_pred HHHhcCCCCHHHHhCCHHHHHHHHHHHhC------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEE
Confidence 45567788899999999999998876533 112359999999999999999999987 4568888
Q ss_pred eccchhhhhccchHHHHHHHHHHH-H-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 011305 274 SASSVVSKWRGDSEKLIKVLFELA-R-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~~A-~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVI 351 (489)
++++..+. ......+....... . ...+.||+|||+|.+... ..+.|+..++. ....+.+|
T Consensus 75 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~i 136 (319)
T 2chq_A 75 NASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCRFI 136 (319)
T ss_dssp ETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTSS---SSSSEEEE
T ss_pred eCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCeEE
Confidence 88764321 12222222222110 0 134689999999988532 23456665553 33457788
Q ss_pred EEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 352 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 352 atTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
++||.+..+.+++.+||. .+.++.|+.+++..++...+...+...+. .++.++..+.|
T Consensus 137 ~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp EEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred EEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999999999999995 79999999999999999988766554332 34555654443
No 58
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.67 E-value=3e-16 Score=176.03 Aligned_cols=203 Identities=17% Similarity=0.192 Sum_probs=143.1
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD 285 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~ 285 (489)
++++|++.+++.+.+.+....... .....|..++||+||||||||++|+++|+.+ +.+++.++|+++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 568999999999998886532111 0012233479999999999999999999998 7899999999998776654
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCcEEEEEEeCCC
Q 011305 286 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP 357 (489)
Q Consensus 286 ~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~viVIatTn~p 357 (489)
...+....+...++||||||+|.+.+ .+++.|++.++.-. ....++++|+|||.+
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKAHP-------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSCH-------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ----cchhhHHHHhCCCeEEEEeCccccCH-------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 12233344455678999999998743 35677777776422 123457889999975
Q ss_pred Cc------------ccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC-------CCCCCC---CHHHHHHH--hcCCcH
Q 011305 358 WE------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGEESL---PYDLLVER--TEGYSG 413 (489)
Q Consensus 358 ~~------------Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~~~~~~---dl~~La~~--t~G~sg 413 (489)
.. +.+++++||+..+.|++|+.+++..|++.++... ...... .++.|++. ...+..
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 710 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGA 710 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTT
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCC
Confidence 43 7899999999999999999999999999877442 111111 23445543 234667
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 011305 414 SDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 414 ~Di~~l~~~A~~~a~rR~ 431 (489)
++++++++++...++.+.
T Consensus 711 R~L~~~i~~~v~~~l~~~ 728 (758)
T 3pxi_A 711 RPLRRAIQKHVEDRLSEE 728 (758)
T ss_dssp TTHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 889999988887776654
No 59
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=7e-16 Score=154.11 Aligned_cols=194 Identities=20% Similarity=0.170 Sum_probs=132.8
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEE
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN 272 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~ 272 (489)
.+..++.+.+|++++|++.+++.+...+... ...++||+||||||||++|+++++.+. ..++.
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 3455677888999999999999999877541 123599999999999999999999863 34788
Q ss_pred EeccchhhhhccchHHHHHHHHHHH--HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 273 ISASSVVSKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 273 v~~s~l~~~~~g~~~~~l~~lf~~A--~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
+++++..+. ......+....... ....+.||+|||+|.+... ..+.|+..++. ....+.+
T Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~ 143 (327)
T 1iqp_A 82 LNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEM---FSSNVRF 143 (327)
T ss_dssp EETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTTEEE
T ss_pred eeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCeE
Confidence 887654321 11112222211100 0134689999999988432 34556666653 2334667
Q ss_pred EEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHH
Q 011305 351 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 351 IatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~~A 423 (489)
|++||.+..+.+++.+||. .+.+++|+.++...+++..+...+...+ ..++.++..+.| +.+.+..+++.+
T Consensus 144 i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 144 ILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp EEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred EEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 8889999999999999996 7899999999999999988766554322 235566666654 444444444433
No 60
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.67 E-value=4.7e-16 Score=174.33 Aligned_cols=227 Identities=23% Similarity=0.271 Sum_probs=156.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNI 273 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v 273 (489)
.+.+|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 345799999999999998886643 234789999999999999999999987 6778888
Q ss_pred eccchh--hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 011305 274 SASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 274 ~~s~l~--~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVI 351 (489)
++..+. ..+.|..+..++.++..+....++||||||+|.+.+........ .... ..+..+... ..+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~----~~~~----~~L~~~l~~-~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ----VDAA----NLIKPLLSS-GKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH----HHHH----HHHSSCSSS-CCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch----HHHH----HHHHHHHhC-CCeEEE
Confidence 887776 46788899999999999988778999999999998764331111 1122 222222223 346677
Q ss_pred EEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC----CCCC-CCCHHHHHHHhcC-----CcHHHH
Q 011305 352 AATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ----TGEE-SLPYDLLVERTEG-----YSGSDI 416 (489)
Q Consensus 352 atTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~----~~~~-~~dl~~La~~t~G-----~sg~Di 416 (489)
++|+.++ .+|+++.+||. .+.++.|+.+++.+||+.++... .... +..+..++..+.+ +.+..+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 7887643 47889999997 69999999999999999876542 2221 2224555555444 445566
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 417 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 417 ~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
..++.+|.... + +. +.. .....|+.+|+.+++....
T Consensus 399 i~lld~a~~~~--~----~~------~~~--~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 399 IDVIDEAGARA--R----LM------PVS--KRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHH--H----HS------SSC--CCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH--h----cc------ccc--ccCCccCHHHHHHHHHHhc
Confidence 66666654321 1 00 000 1123489999999998764
No 61
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.66 E-value=1.5e-16 Score=145.31 Aligned_cols=152 Identities=24% Similarity=0.363 Sum_probs=109.4
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEe
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 274 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~ 274 (489)
+..|++++|.+...+.+.+.+.. ....++||+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 45789999999988888877633 234689999999999999999999987 78899998
Q ss_pred ccchhh--hhccchHHHHHHHHHHHHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 011305 275 ASSVVS--KWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 275 ~s~l~~--~~~g~~~~~l~~lf~~A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVI 351 (489)
+..+.. .+.+.....+..++..+... .|.+|+|||+|.+.+.+...... ..+.+.+...++. ..+.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~----~~~~~~l~~~~~~-----~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA----LDAGNILKPMLAR-----GELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS----CCTHHHHHHHHHT-----TCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc----hHHHHHHHHHHhc-----CCeeEE
Confidence 877653 23455556677777766654 67899999999997543211100 1123334344431 336678
Q ss_pred EEeCCCC-----cccHHHHhhcccccccCCCC
Q 011305 352 AATNLPW-----ELDAAMLRRLEKRILVPLPD 378 (489)
Q Consensus 352 atTn~p~-----~Ld~al~rRf~~~i~~~~Pd 378 (489)
++||.+. .+++++++||.. +.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 8888765 589999999975 8898885
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=3.5e-15 Score=151.92 Aligned_cols=225 Identities=19% Similarity=0.187 Sum_probs=146.9
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEeccc
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASS 277 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el------~~~~i~v~~s~ 277 (489)
+....++++|.+...+.+.+.+..... ...+.+++|+||+|||||++++++++.+ +.+++.+++..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 344568999999999999887654322 1345789999999999999999999988 88999999764
Q ss_pred hhhh----------------hccc-hHHHHHHHHHHHHhcC-CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011305 278 VVSK----------------WRGD-SEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (489)
Q Consensus 278 l~~~----------------~~g~-~~~~l~~lf~~A~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld 339 (489)
.... ..+. .......++....... |.||+|||++.+...... ..+..++..++
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~---------~~l~~l~~~~~ 157 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND---------DILYKLSRINS 157 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS---------THHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC---------HHHHHHhhchh
Confidence 3211 0111 2233444555444433 789999999999754211 24455666665
Q ss_pred CCccCCCcEEEEEEeCCC---CcccHHHHhhcc-cccccCCCCHHHHHHHHHHhcCCCC--CCC-CCCHHHHHHHhc---
Q 011305 340 GLTQSDELVFVLAATNLP---WELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQT--GEE-SLPYDLLVERTE--- 409 (489)
Q Consensus 340 g~~~~~~~viVIatTn~p---~~Ld~al~rRf~-~~i~~~~Pd~~eR~~IL~~~l~~~~--~~~-~~dl~~La~~t~--- 409 (489)
.. ...++.+|++|+.+ ..+++.+.+||. ..+.+++++.++..+++...+.... ... +..++.++..+.
T Consensus 158 ~~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 158 EV--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp SC--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred hc--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 43 33457788888877 457888999986 4899999999999999998764322 111 122455666555
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 410 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
| .++.+..++..++..+... + ...|+.+|+..++....
T Consensus 236 G-~~r~~~~ll~~a~~~a~~~------~------------~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 236 G-DARRALDLLRVSGEIAERM------K------------DTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp C-CHHHHHHHHHHHHHHHHHT------T------------CSSCCHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHhc------C------------CCccCHHHHHHHHHHHh
Confidence 4 4455555666665433211 0 02377777777765543
No 63
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.66 E-value=7.4e-16 Score=157.13 Aligned_cols=190 Identities=22% Similarity=0.242 Sum_probs=133.9
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
..++.+.+|++++|++.+++.+...+... ..++.+||+||+|||||++|+++++.++..
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 34566778999999999999999887531 234578999999999999999999988542
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.++...- ... ..++.++..+. ...+.||+|||+|.+... ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~ 136 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAASR--TKV----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SF 136 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTCS--CCS----SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-------------HH
T ss_pred cHHHHHHhccCCCceEEeccccc--CCH----HHHHHHHHHHhhccccCCeEEEEEECcchhcHH-------------HH
Confidence 233333210 011 12344444443 234679999999987422 34
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..++. .+..+++|++|+.+..+.+++++|+ ..+.++.|+.++...+++..+...+...+. .++.++..+.|
T Consensus 137 ~~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G 212 (373)
T 1jr3_A 137 NALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 (373)
T ss_dssp HHHHHHHHS---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS
T ss_pred HHHHHHHhc---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 567777763 3345778888888889999999998 679999999999999999888665544332 35667777765
Q ss_pred CcHHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEAA 424 (489)
Q Consensus 411 ~sg~Di~~l~~~A~ 424 (489)
+.+++..+++.+.
T Consensus 213 -~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 213 -SLRDALSLTDQAI 225 (373)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHH
Confidence 5666666665543
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.66 E-value=3.9e-16 Score=174.92 Aligned_cols=206 Identities=19% Similarity=0.230 Sum_probs=144.9
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh-------
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~------- 281 (489)
++++|++.+++.+...+...... ......|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 35889999999988877542210 00012344579999999999999999999999999999999887543
Q ss_pred -----hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc--------CCCcE
Q 011305 282 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELV 348 (489)
Q Consensus 282 -----~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--------~~~~v 348 (489)
|+|..+. ..+....+...++||||||+|.+.+ .+++.|++.|+.-.- .-.++
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH-------------HHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 3322111 1233444455569999999998743 367778888873211 11457
Q ss_pred EEEEEeCCCC-------------------------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC---------C
Q 011305 349 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ---------T 394 (489)
Q Consensus 349 iVIatTn~p~-------------------------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~---------~ 394 (489)
+||+|||.+. .+++++++||+..+.|++|+.+++..|++.++... .
T Consensus 600 ~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 679 (758)
T 1r6b_X 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVS 679 (758)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcE
Confidence 8999999754 57899999999889999999999999999987532 1
Q ss_pred CCC-CCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHH
Q 011305 395 GEE-SLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 395 ~~~-~~dl~~La~~t--~G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
... +..++.+++.. ..+..+++..+++.+...++.+.+
T Consensus 680 ~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 680 LEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp EEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred EEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 111 22245566543 355688999999988887766543
No 65
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.66 E-value=1.2e-15 Score=152.26 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=131.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEec
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 275 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~ 275 (489)
..+.+..|++++|++.+++.+...+... .. .++||+||||+|||++|+++++.+ +.+++.+++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAKDG-----------NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHHSC-----------CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHHcC-----------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 3456778999999999999999887531 22 349999999999999999999986 456888887
Q ss_pred cchhhhhccchHHHHHHHHHHHH-------hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcE
Q 011305 276 SSVVSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 348 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~-------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~v 348 (489)
++..+ ...++.++.... ...+.||+|||+|.+... ..+.|+..++. ....+
T Consensus 81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~---~~~~~ 138 (323)
T 1sxj_B 81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMEL---YSNST 138 (323)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHH---TTTTE
T ss_pred ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------------HHHHHHHHHhc---cCCCc
Confidence 65321 233444444333 223689999999988532 23445666652 23446
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHH
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKE 422 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~~ 422 (489)
.+|++||.+..+.+++.+|+. .+.++.|+.++..++++..+...+...+ ..++.+++.+.|. .+.+..+++.
T Consensus 139 ~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~~l~~ 211 (323)
T 1sxj_B 139 RFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAINNLQS 211 (323)
T ss_dssp EEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred eEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 677788999999999999995 7999999999999999988765444322 2356677777653 3333333333
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=2.8e-16 Score=176.27 Aligned_cols=192 Identities=20% Similarity=0.281 Sum_probs=133.0
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 266 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el--------- 266 (489)
..++.....+..+++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 167 ~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l 234 (758)
T 3pxi_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL 234 (758)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred HHHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhh
Confidence 34455555667899999999999999887643 234689999999999999999999997
Q ss_pred -CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 267 -KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 267 -~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
+.+++.+++ ..+|.|+.+..++.+|..+....|+||||| .. ....+.|+..++ .
T Consensus 235 ~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~-----------~~~~~~L~~~l~-----~ 289 (758)
T 3pxi_A 235 RDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA-----R 289 (758)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT-----S
T ss_pred cCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc-----------hhHHHHHHHHHh-----c
Confidence 788888887 556788888899999999998889999999 00 112233443332 2
Q ss_pred CcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHHhc-----C
Q 011305 346 ELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-----PYDLLVERTE-----G 410 (489)
Q Consensus 346 ~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-----dl~~La~~t~-----G 410 (489)
..+.+|++||... .+++++++|| ..+.++.|+.+++..||+.++......... .+..++..+. +
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~ 368 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccC
Confidence 3477888888887 6899999999 559999999999999999887764322222 2444544433 4
Q ss_pred CcHHHHHHHHHHHHh
Q 011305 411 YSGSDIRLVSKEAAM 425 (489)
Q Consensus 411 ~sg~Di~~l~~~A~~ 425 (489)
+.+.....++.+|+.
T Consensus 369 ~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 369 FLPDKAIDLIDEAGS 383 (758)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHH
Confidence 555666666666543
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=5.8e-15 Score=150.98 Aligned_cols=225 Identities=14% Similarity=0.071 Sum_probs=148.7
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCc--eEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccch
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK--GILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSV 278 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~--~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l 278 (489)
....++++|.+...+.+.+.+...... ..+. +++|+||||||||++++++++.+ +.+++.++|...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 334589999999999999887654321 2234 89999999999999999999998 678899997653
Q ss_pred hhhh----------------ccc-hHHHHHHHHHHHH-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011305 279 VSKW----------------RGD-SEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (489)
Q Consensus 279 ~~~~----------------~g~-~~~~l~~lf~~A~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg 340 (489)
.... .+. .......+..... ...|.||+|||+|.+. ...+..|+..++.
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQE 151 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------HHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------hHHHHHHHHHHHh
Confidence 3110 011 1222233333222 2447899999999882 2245666666654
Q ss_pred Ccc-CCCcEEEEEEeCCC---CcccHHHHhhccc-ccccCCCCHHHHHHHHHHhcCCCC---CCCCCCHHHHHHHhc---
Q 011305 341 LTQ-SDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQT---GEESLPYDLLVERTE--- 409 (489)
Q Consensus 341 ~~~-~~~~viVIatTn~p---~~Ld~al~rRf~~-~i~~~~Pd~~eR~~IL~~~l~~~~---~~~~~dl~~La~~t~--- 409 (489)
... ....+.+|++||.+ ..+++.+.+||.. .+.+++++.++..++++..+.... .-.+..++.+++.+.
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 322 11357788889888 5688999999975 799999999999999998875421 112233566777773
Q ss_pred -----CCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 410 -----GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 410 -----G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
+-.++.+..+++.|+..+..+ + ...|+.+|+..++......
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~------~------------~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQN------G------------RKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHT------T------------CSSCCHHHHHHHHHHHSCC
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHh------C------------CCCcCHHHHHHHHHHHhhh
Confidence 235566777777766544321 0 0136777777777666544
No 68
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.65 E-value=2.3e-14 Score=145.51 Aligned_cols=220 Identities=17% Similarity=0.169 Sum_probs=146.3
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.......+|++++|.+.+++.+...+...... ..++.+++|+|||||||||+++++|++++.++...++..+.
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 34445668999999999998888766442110 12446899999999999999999999999988777665432
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------c--------C
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------Q--------S 344 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-------~--------~ 344 (489)
. ...+..++.. ...+.|+||||++.+.+. ..+.|+..++... . .
T Consensus 89 ~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 89 K------QGDMAAILTS--LERGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp S------HHHHHHHHHH--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC--------------
T ss_pred C------HHHHHHHHHH--ccCCCEEEEcchhhcCHH-------------HHHHHHHHHHhcccceeeccCccccccccc
Confidence 1 1222232221 224589999999988542 1222333332211 0 0
Q ss_pred CCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHH
Q 011305 345 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 345 ~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A 423 (489)
...+.++++|+.+..+++++++||.....++.|+.+++.+|++......+...+. .+..++..+.| +++++..+++.+
T Consensus 148 l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 1235567789999999999999998889999999999999999887655444332 35667777766 457777777766
Q ss_pred HhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 424 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 424 ~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
...+..+ +. ..||.+++.+++....
T Consensus 227 ~~~a~~~------~~------------~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 227 RDMLTVV------KA------------DRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHH------TC------------SSBCHHHHHHHHHHHT
T ss_pred HHHHHHc------CC------------CCcCHHHHHHHHHHhC
Confidence 5443221 10 1377777777777654
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.63 E-value=3.3e-16 Score=177.83 Aligned_cols=207 Identities=19% Similarity=0.252 Sum_probs=133.2
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 266 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el--------- 266 (489)
...+.....+.+|++++|.+...+.+.+.+.. ....+++|+||||||||++|+++|+.+
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l 224 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGL 224 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTS
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhh
Confidence 33444444567899999999998888876633 234689999999999999999999998
Q ss_pred -CCcEEEEeccchh--hhhccchHHHHHHHHHHHHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011305 267 -KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 342 (489)
Q Consensus 267 -~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~ 342 (489)
+.+++.++++.+. ..+.|+.+..++.++..+... .|+||||||+|.+.+.....+ ...+.+.|...++
T Consensus 225 ~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~--- 296 (854)
T 1qvr_A 225 KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA--- 296 (854)
T ss_dssp TTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH---
T ss_pred cCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh---
Confidence 8899999998886 567888899999999988875 678999999999986543211 1223333444443
Q ss_pred cCCCcEEEEEEeCCCC----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCC----CC-CCCCHHHHHHHh-----
Q 011305 343 QSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT----GE-ESLPYDLLVERT----- 408 (489)
Q Consensus 343 ~~~~~viVIatTn~p~----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~----~~-~~~dl~~La~~t----- 408 (489)
. ..+.+|++||.++ .+++++.+||.. +.++.|+.+++..||+.++.... .. .+..+..++..+
T Consensus 297 -~-~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 297 -R-GELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYIT 373 (854)
T ss_dssp -T-TCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCC
T ss_pred -C-CCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcc
Confidence 1 2355788887664 378999999975 99999999999999987765332 11 122244455544
Q ss_pred cCCcHHHHHHHHHHHHh
Q 011305 409 EGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~ 425 (489)
.+|.+.....++.+|+.
T Consensus 374 ~~~lp~kai~lldea~a 390 (854)
T 1qvr_A 374 ERRLPDKAIDLIDEAAA 390 (854)
T ss_dssp SSCTHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHH
Confidence 34556666666665554
No 70
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.62 E-value=2.6e-15 Score=160.29 Aligned_cols=155 Identities=21% Similarity=0.224 Sum_probs=100.8
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEecc-----chhhh
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-----SVVSK 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s-----~l~~~ 281 (489)
..++|++++++.+...+.. +.++||+||||||||++|+++|+.++ .+|..+++. ++.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 3689999999888765532 36899999999999999999999884 466666553 23222
Q ss_pred hccchHHHHHHHHHHHHhc---CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-------ccCCCcEEEE
Q 011305 282 WRGDSEKLIKVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------TQSDELVFVL 351 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~---~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~-------~~~~~~viVI 351 (489)
+.+..... ...+..+... .++||||||++.+.+ .+++.|+..|+.- ....+..++|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~-------------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP-------------AILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCCH-------------HHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH-------------HHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 22111111 1122211111 367999999986532 3566778877522 1112223467
Q ss_pred EEeCCCCc---ccHHHHhhcccccccCCCCH-HHHHHHHHHhcC
Q 011305 352 AATNLPWE---LDAAMLRRLEKRILVPLPDT-EARRAMFESLLP 391 (489)
Q Consensus 352 atTn~p~~---Ld~al~rRf~~~i~~~~Pd~-~eR~~IL~~~l~ 391 (489)
+|||.+.. +.+++++||...+.++.|+. +++..|++....
T Consensus 154 ~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 154 AASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp EEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred hccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 78886432 45799999988899999987 778899987653
No 71
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.62 E-value=3.2e-15 Score=146.17 Aligned_cols=159 Identities=21% Similarity=0.199 Sum_probs=96.5
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeccchhhhh
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKW 282 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s~l~~~~ 282 (489)
.+|++++|.+...+.+.+.+.... ..+.++||+||||||||++|+++++.+. .+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 468999999999998887776532 2246899999999999999999999874 789999998764321
Q ss_pred c-----cchHHH-------HHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------
Q 011305 283 R-----GDSEKL-------IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------- 342 (489)
Q Consensus 283 ~-----g~~~~~-------l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-------- 342 (489)
. |..... ....+..+ .+++|||||+|.+... .+..|+..++...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC--
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCcc
Confidence 1 111000 01122222 3489999999988543 3445666665221
Q ss_pred cCCCcEEEEEEeCCCC-------cccHHHHhhccc-ccccCCCCH--HHHHHHHHHhc
Q 011305 343 QSDELVFVLAATNLPW-------ELDAAMLRRLEK-RILVPLPDT--EARRAMFESLL 390 (489)
Q Consensus 343 ~~~~~viVIatTn~p~-------~Ld~al~rRf~~-~i~~~~Pd~--~eR~~IL~~~l 390 (489)
.....+.+|+|||.+. .+.+++.+||.. .+.+|..+. ++...+++.++
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 1123467888888751 367899999953 344444432 34444554444
No 72
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.7e-15 Score=152.75 Aligned_cols=159 Identities=10% Similarity=0.066 Sum_probs=115.7
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeccchhh
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVVS 280 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~~s~l~~ 280 (489)
|.|.++..+.+...+...+. ...+.+++|+||||||||++++++++++ ...+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 66777777777776655432 2356899999999999999999999998 35688999876543
Q ss_pred h----------h------ccchHHHHHHHHHHH--HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011305 281 K----------W------RGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 342 (489)
Q Consensus 281 ~----------~------~g~~~~~l~~lf~~A--~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~ 342 (489)
. . .+.....+..+|... ....+.||+|||+|.+. . ..++..|+....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~--- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWIS--- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhccc---
Confidence 2 1 133556777778764 34557899999999996 1 123444444332
Q ss_pred cCCCcEEEEEEeCCCCc----ccHHHHhhcc-cccccCCCCHHHHHHHHHHhcCC
Q 011305 343 QSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 343 ~~~~~viVIatTn~p~~----Ld~al~rRf~-~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
.....++||+++|..+. +++++++||. ..+.|++++.++..+|++..+..
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 23456889999988754 5566788996 67999999999999999998855
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=5.4e-15 Score=150.10 Aligned_cols=191 Identities=14% Similarity=0.152 Sum_probs=125.7
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---------
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------- 268 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~--------- 268 (489)
.+.+++.+.+|++++|++.+++.++..+.. ....++ ++|+||+|+|||++++++++++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~----------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQ----------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTC----------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhh----------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 356678888999999999999988876511 012234 999999999999999999996521
Q ss_pred --------------------cEEEEeccchhhhhccchHHHHHHHHHHHH--------------hcCCcEEEEchhhhHH
Q 011305 269 --------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR--------------HHAPSTIFLDEIDAII 314 (489)
Q Consensus 269 --------------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~--------------~~~p~VL~IDEiD~l~ 314 (489)
+++.+++++.. ......++..+..+. ...|.||+|||++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 12333332211 001112333333322 2256799999999863
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCC
Q 011305 315 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 394 (489)
Q Consensus 315 ~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 394 (489)
.. ..+.|+..++.. ...+.+|.+|+.+..+.+++++|| ..+.|+.|+.++...+++..+...+
T Consensus 148 ~~-------------~~~~L~~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 148 KD-------------AQAALRRTMEKY---SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp HH-------------HHHHHHHHHHHS---TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred HH-------------HHHHHHHHHHhh---cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcC
Confidence 22 345566666543 234667888999999999999999 7799999999999999999886655
Q ss_pred CCCC--CCHHHHHHHhcCCcHHHHHHHHH
Q 011305 395 GEES--LPYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 395 ~~~~--~dl~~La~~t~G~sg~Di~~l~~ 421 (489)
...+ ..++.+++.+.| +.+++..+++
T Consensus 211 ~~~~~~~~l~~i~~~~~G-~~r~a~~~l~ 238 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNG-NLRVSLLMLE 238 (354)
T ss_dssp CEECCSHHHHHHHHHHTT-CHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 5422 346667776655 3344434343
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=6.2e-15 Score=167.40 Aligned_cols=207 Identities=24% Similarity=0.286 Sum_probs=144.5
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh---
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 281 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~--- 281 (489)
+++|+|++.+++.+...+...... ......|..++||+||||||||++|+++++.+ +.+++.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 357899999999998887653210 00012334689999999999999999999999 789999999876543
Q ss_pred ---------hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc--------C
Q 011305 282 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------S 344 (489)
Q Consensus 282 ---------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--------~ 344 (489)
|+|..+ ...+....+...++||||||+|.+.+ .+++.|++.++.-.- .
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~l~~~~~~~~~g~~vd 698 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHP-------------DVFNILLQILDDGRLTDSHGRTVD 698 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSCH-------------HHHHHHHHHHTTTEECCSSSCCEE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccCH-------------HHHHHHHHHhccCceECCCCCEec
Confidence 122211 12233344445568999999987743 367788888874321 1
Q ss_pred CCcEEEEEEeCCC--------------------------CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC-----
Q 011305 345 DELVFVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ----- 393 (489)
Q Consensus 345 ~~~viVIatTn~p--------------------------~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~----- 393 (489)
-.+++||+|||.. ..+.+++++||+..+.+++|+.++...|++.++...
T Consensus 699 ~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~ 778 (854)
T 1qvr_A 699 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA 778 (854)
T ss_dssp CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2357899999972 235688899999999999999999999999887521
Q ss_pred --C--CCC-CCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHHH
Q 011305 394 --T--GEE-SLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 394 --~--~~~-~~dl~~La~~t~--G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
. ... +..++.|++... .++.++++++++.+...++.+.+
T Consensus 779 ~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 779 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp TTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred hCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 1 111 222555666655 67889999999998888777644
No 75
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.57 E-value=5.6e-15 Score=148.28 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=101.8
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh---
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 282 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~--- 282 (489)
++++|.+...+.+.+.+.... ....+|||+||||||||++|+++++.+ +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999999988888776532 234789999999999999999999976 6889999998764321
Q ss_pred --ccch----H---HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCC
Q 011305 283 --RGDS----E---KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 345 (489)
Q Consensus 283 --~g~~----~---~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~ 345 (489)
.|.. . ......|..+. +++|||||+|.+... .+..|+..++... ...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCccccc
Confidence 1110 0 01122344443 389999999988543 3455666666432 112
Q ss_pred CcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHH----HHHHHHHhc
Q 011305 346 ELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEA----RRAMFESLL 390 (489)
Q Consensus 346 ~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~e----R~~IL~~~l 390 (489)
..+.||++||.+ ..+++.+.+||. .+.+..|+..+ ...++++++
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l 190 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFL 190 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHH
Confidence 347788899876 135678888985 44444555444 444555554
No 76
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=1.6e-13 Score=139.20 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=115.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~v 273 (489)
+..++.+.+|++++|++.+++.|...+... .. .+++|+||||||||++|+++|+.+. ..+..+
T Consensus 15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g-----------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEG-----------KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTT-----------CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred hHHHhCCCcHHHhcCcHHHHHHHHHHHhcC-----------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 455667888999999999999998877531 12 2499999999999999999999873 346777
Q ss_pred eccchhhhhccchHHHHHHHHHHHH-h-----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCc
Q 011305 274 SASSVVSKWRGDSEKLIKVLFELAR-H-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~~A~-~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~ 347 (489)
++++..+ ...++..+.... . ..+.|++|||+|.+... ..+.|+..++.. ...
T Consensus 83 ~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~---~~~ 140 (340)
T 1sxj_C 83 NASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERY---TKN 140 (340)
T ss_dssp CTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TTT
T ss_pred cCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhcC---CCC
Confidence 7655311 122333332222 1 23579999999988432 345567777633 234
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCC
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 394 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 394 (489)
+.+|.+||.+..+.+++++||. .+.++.++.++..+++...+....
T Consensus 141 ~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 141 TRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred eEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcC
Confidence 5567788999999999999995 688999999998888888775443
No 77
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.53 E-value=1.9e-14 Score=128.42 Aligned_cols=124 Identities=12% Similarity=0.133 Sum_probs=87.5
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~ 286 (489)
+++|.+...+.+.+.+.... ....+|||+||||||||++|+++++.. +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 67899888888888775532 234689999999999999999999987 78999 999887544
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC-------c
Q 011305 287 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-------E 359 (489)
Q Consensus 287 ~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~-------~ 359 (489)
......+..+. +++|||||+|.+... .+..|+..+... ...+.+|++||.+- .
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~~-------------~q~~Ll~~l~~~---~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTRE-------------QQYHLVQLQSQE---HRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCHH-------------HHHHHHHHHHSS---SCSSCEEEEESSCHHHHHHHSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCHH-------------HHHHHHHHHhhc---CCCEEEEEECCcCHHHHHHcCC
Confidence 22334455554 389999999988543 344566666422 22355788888752 3
Q ss_pred ccHHHHhhcc
Q 011305 360 LDAAMLRRLE 369 (489)
Q Consensus 360 Ld~al~rRf~ 369 (489)
+.+.+..|+.
T Consensus 126 ~~~~L~~rl~ 135 (145)
T 3n70_A 126 IIAELYYCFA 135 (145)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHhc
Confidence 5677777774
No 78
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=3.1e-15 Score=163.32 Aligned_cols=166 Identities=22% Similarity=0.269 Sum_probs=103.9
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhc-ccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----eccchhhhhc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFT-GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR 283 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~-~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v----~~s~l~~~~~ 283 (489)
..|+|++.+|+.+...+.... +.... .......++||+||||||||++|+++|+.++..++.. ++.++.+...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~--~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV--PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC--CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCCC--cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 579999999888754332210 00000 1123334899999999999999999999997766543 2222222111
Q ss_pred cch----HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEE
Q 011305 284 GDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVF 349 (489)
Q Consensus 284 g~~----~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~~~~vi 349 (489)
... .......+..| ..+||||||+|.+... .++.|+..|+.-. ..+..+.
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 100 00001122233 2389999999988543 3456777776322 1234577
Q ss_pred EEEEeCCCC-------------cccHHHHhhccc-ccccCCCCHHHHHHHHHHhcCCC
Q 011305 350 VLAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 350 VIatTn~p~-------------~Ld~al~rRf~~-~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
||+|||.+. .+++++++||+. .+..+.|+.+ ...|.++.+...
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 999999886 799999999974 4556667777 888888776543
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.51 E-value=6.8e-15 Score=131.12 Aligned_cols=131 Identities=11% Similarity=0.129 Sum_probs=89.0
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHH
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 289 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~ 289 (489)
+++|.+..++.+.+.+.... ....+|||+||||||||++|+++++... +++.++|+++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 68899999998888876532 2346899999999999999999999988 99999998875543
Q ss_pred HHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-Cc----ccHHH
Q 011305 290 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAM 364 (489)
Q Consensus 290 l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p-~~----Ld~al 364 (489)
...++..+. +++|||||+|.+... .+..|+..++.. ....+.+|+|||.+ .. +++.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~-------------~q~~Ll~~l~~~--~~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRN-------------IQTGITFIIGKA--ERCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHH-------------HHHHHHHHHHHH--TTTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHH-------------HHHHHHHHHHhC--CCCCEEEEEecCCCHHHHHhCccHHH
Confidence 344555544 489999999998543 233455555422 13345677777754 33 55666
Q ss_pred Hhhccc-ccccCC
Q 011305 365 LRRLEK-RILVPL 376 (489)
Q Consensus 365 ~rRf~~-~i~~~~ 376 (489)
..|+.. .+.+|+
T Consensus 129 ~~rl~~~~i~lPp 141 (143)
T 3co5_A 129 AGLFSESVVRIPP 141 (143)
T ss_dssp HHHSSSEEEEECC
T ss_pred HHHhcCcEEeCCC
Confidence 777633 344443
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.43 E-value=1e-12 Score=133.32 Aligned_cols=164 Identities=12% Similarity=0.102 Sum_probs=112.8
Q ss_pred CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------
Q 011305 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------------- 269 (489)
Q Consensus 213 G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~----------------------- 269 (489)
-++++.+.+...+.. ...++.+||+||||+|||++|+++|+.+...
T Consensus 6 w~~~~~~~l~~~i~~-----------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA-----------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GGHHHHHHHHHHHHT-----------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred chHHHHHHHHHHHHc-----------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 346667777766543 2345679999999999999999999988532
Q ss_pred -EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC
Q 011305 270 -FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 344 (489)
Q Consensus 270 -~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~ 344 (489)
++.+++.+- ........++.+.+.+.. ..+.|++|||+|.+... ..+.|+..++. .
T Consensus 75 d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lEe---p 135 (334)
T 1a5t_A 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEE---P 135 (334)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTS---C
T ss_pred CEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhcC---C
Confidence 344443210 001123445666665542 23579999999988432 35678888873 3
Q ss_pred CCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCC
Q 011305 345 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGY 411 (489)
Q Consensus 345 ~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~ 411 (489)
+..+++|.+|++++.+.++++||+. .+.|+.|+.++..++++... .. .+..+..++..+.|-
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~ 197 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGS 197 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTC
T ss_pred CCCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCC
Confidence 4457778889999999999999994 69999999999999998876 11 122345566666653
No 81
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.37 E-value=1.4e-11 Score=126.88 Aligned_cols=208 Identities=14% Similarity=0.099 Sum_probs=128.5
Q ss_pred CCCccccCcHHHHHHHHHHH-HccccCchhhcccCCCCceEEE--EcCCCCcHHHHHHHHHHHh---------CCcEEEE
Q 011305 206 VKWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILL--FGPPGTGKTMLAKAVATEC---------KTTFFNI 273 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v-~~~l~~~~~~~~~~~~~~~vLL--~GppGtGKT~lAralA~el---------~~~~i~v 273 (489)
...++++|.+...+.|.+.+ ......+ ...+..++| +||||+|||++++++++.+ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34478999999999988877 5432210 023468999 9999999999999999877 4567888
Q ss_pred eccchhh------hh----------ccc-hHHHHHHHHHHHH-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHH
Q 011305 274 SASSVVS------KW----------RGD-SEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 335 (489)
Q Consensus 274 ~~s~l~~------~~----------~g~-~~~~l~~lf~~A~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL 335 (489)
++..... .. .+. .......+..... ...|.||+|||+|.+...... ....+..++
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-------~~~~l~~l~ 165 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-------AAEDLYTLL 165 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-------CHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-------chHHHHHHH
Confidence 8643211 00 011 1122223332222 245789999999998642110 012334444
Q ss_pred HHhcCCccCC--CcEEEEEEeCCCC---ccc---HHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC---CCCCHHHH
Q 011305 336 IQMDGLTQSD--ELVFVLAATNLPW---ELD---AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE---ESLPYDLL 404 (489)
Q Consensus 336 ~~ldg~~~~~--~~viVIatTn~p~---~Ld---~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~---~~~dl~~L 404 (489)
..++...... .++.+|++|+.++ .++ +.+.+++...+.+++++.++..+++...+...... .+..+..+
T Consensus 166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i 245 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 245 (412)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 4444332113 5677888887665 344 66777886669999999999999998765422211 12235567
Q ss_pred HHHhc------CCcHHHHHHHHHHHHhHH
Q 011305 405 VERTE------GYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 405 a~~t~------G~sg~Di~~l~~~A~~~a 427 (489)
++.+. | .++.+..++..++..+
T Consensus 246 ~~~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 246 SDVYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 77777 5 5567777777665443
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.36 E-value=2.5e-12 Score=140.61 Aligned_cols=53 Identities=34% Similarity=0.491 Sum_probs=45.0
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
...++..|++++|++.+++.+...+.. +.+++|+||||||||++|++++..+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 345677899999999999888876642 36899999999999999999999884
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.33 E-value=9.8e-12 Score=124.78 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEeccchhhhhccch
Q 011305 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 213 G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el------~~~~i~v~~s~l~~~~~g~~ 286 (489)
|++++.+.|+..+... . .+++||+||||+|||++|+++|+.+ ...++.+++++- ...
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 6677888888776541 1 3689999999999999999999874 346777776421 122
Q ss_pred HHHHHHHHHHHHhc----CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH
Q 011305 287 EKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (489)
Q Consensus 287 ~~~l~~lf~~A~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~ 362 (489)
-..++.+.+.+... ...|++|||+|.+... ..+.|+..++. .+..+++|.+|+.++.+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-------------a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-------------AANAFLKALEE---PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-------------HHHHTHHHHHS---CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-------------HHHHHHHHHhC---CCCCeEEEEEECChHhChH
Confidence 33466677666532 2369999999998432 45778888873 3345667778888999999
Q ss_pred HHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 363 AMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 363 al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
+++|| .+.|+.|+.++...+++..+
T Consensus 128 tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 79999999999999988876
No 84
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.28 E-value=4e-12 Score=151.01 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=108.9
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccC----------chhhcc-------------------cCCCCceEEEEcCCCCc
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKY----------PKYFTG-------------------LLSPWKGILLFGPPGTG 254 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~----------~~~~~~-------------------~~~~~~~vLL~GppGtG 254 (489)
+.++|+++.|++++|+.+.+.+.+++.+ ++.+.. ..+.++.+|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4578999999999999999999998844 444543 12233459999999999
Q ss_pred HHHHHHHHHHHh---CCcEEEEeccchh------------hhhccc----hHHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 255 KTMLAKAVATEC---KTTFFNISASSVV------------SKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 255 KT~lAralA~el---~~~~i~v~~s~l~------------~~~~g~----~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
||++|++++.+. +.|.+.|+..+.. .+|+++ +++.++.++..|+...|++||+|++|+|.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999877 5677777766543 556666 899999999999999999999999999999
Q ss_pred hhc---ccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 316 QRG---EAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 316 ~r~---~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.+. ... .+.....+++++++..|++...... |+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~-v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT-CEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCC-eEEE-Eeccc
Confidence 843 111 1124566788999999998755444 5555 67765
No 85
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.20 E-value=2.7e-11 Score=99.15 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHH
Q 011305 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 457 (489)
Q Consensus 378 d~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eD 457 (489)
|.++|.+||+.++++.+...++|++.||+.|+||||+||..+|++|++.++++. ...|+.+|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~------------------~~~i~~~d 63 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------------------RKVATEKD 63 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc------------------cccCCHHH
Confidence 567899999999999998889999999999999999999999999999998861 12499999
Q ss_pred HHHHHhhhCCChhh--hHHHHHHHH
Q 011305 458 VEIALKNTRPSAHL--HAHRYEKFN 480 (489)
Q Consensus 458 f~~AL~~~~ps~~~--~~~~y~~~~ 480 (489)
|..|++++.++... ....|.+|+
T Consensus 64 f~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 64 FLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHTC---------------
T ss_pred HHHHHHHHhcCcccccchhHHhccC
Confidence 99999999999764 368888885
No 86
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.17 E-value=5.8e-11 Score=122.94 Aligned_cols=216 Identities=20% Similarity=0.230 Sum_probs=131.9
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc-
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR- 283 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~- 283 (489)
++.++|.....+.+.+.+... .....+|+|+|++||||+++|++++... +.||+.++|+.+.....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHh----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 457888887777777766542 1234679999999999999999999877 47999999987643211
Q ss_pred ----cchH-------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------ccC
Q 011305 284 ----GDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQS 344 (489)
Q Consensus 284 ----g~~~-------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~--------~~~ 344 (489)
|... ......|..|.. ++||||||+.+... ++..|+..++.- ...
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 1000 001224444443 89999999998644 445566665421 111
Q ss_pred CCcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHH----HHHHHHhcCCCCCCCCCCHHHHHHHhcCCcH
Q 011305 345 DELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEAR----RAMFESLLPSQTGEESLPYDLLVERTEGYSG 413 (489)
Q Consensus 345 ~~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR----~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg 413 (489)
...+.||+|||.. ..+.+.+..|+. .+.+..|+..+| ..++.+++...... ......+++.
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~ 341 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYYRLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRK-------YAKEVEGFTK 341 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHH-------TTCCCCEECH
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHHhhc-CCeecCCcchhccccHHHHHHHHHHHHHHH-------cCCCCCCCCH
Confidence 2246788999874 224556666763 344555655554 34444444321100 0001234677
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 414 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 414 ~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
..+..+.+..|.+++|.+.+.++..-...+. ..|+.+|+...++
T Consensus 342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~------~~i~~~~l~~~~~ 385 (387)
T 1ny5_A 342 SAQELLLSYPWYGNVRELKNVIERAVLFSEG------KFIDRGELSCLVN 385 (387)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS------SEECHHHHHHHC-
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC------CcCcHHHCcHhhh
Confidence 7777788888888888877777655443322 2488898876543
No 87
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.16 E-value=4.4e-11 Score=109.81 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=63.9
Q ss_pred CCCCCCCccccC----cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEE
Q 011305 202 GSPDVKWESIKG----LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNI 273 (489)
Q Consensus 202 ~~~~~~~~dliG----~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v 273 (489)
...+.+|+++++ +..+.+.+++++.... ..++.+++|+||+|||||++++++++.+ |..++.+
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 345678999886 3444455554443321 1235789999999999999999999987 6677788
Q ss_pred eccchhhhhccchHHH-HHHHHHHHHhcCCcEEEEchhhhH
Q 011305 274 SASSVVSKWRGDSEKL-IKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~-l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
+..++........... ...+... ...|.+|+|||++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred EHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 8777654432111000 0011221 235789999999753
No 88
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.12 E-value=5.4e-11 Score=96.09 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHH
Q 011305 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 457 (489)
Q Consensus 378 d~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eD 457 (489)
|.++|.+||+.++++.+...++|++.||+.|+||||+||..+|++|++.++++. ..+|+++|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~~~d 63 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------------RYIVLAKD 63 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHH
Confidence 678999999999999888888999999999999999999999999999877641 13599999
Q ss_pred HHHHHhhhCCChhhhHHHH
Q 011305 458 VEIALKNTRPSAHLHAHRY 476 (489)
Q Consensus 458 f~~AL~~~~ps~~~~~~~y 476 (489)
|..|+++++||.+.+++.|
T Consensus 64 f~~Al~~~~ps~~~~l~~y 82 (83)
T 3aji_B 64 FEKAYKTVIKKDEQEHEFY 82 (83)
T ss_dssp HHHHHHHHCC---------
T ss_pred HHHHHHHHccCchHHHHhc
Confidence 9999999999988556655
No 89
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.11 E-value=7.7e-11 Score=96.06 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=70.3
Q ss_pred ccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCC
Q 011305 373 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGP 452 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~ 452 (489)
.-.+||.++|.+||+.++++.+...++|++.||+.|.||||+||.++|++|++.++++. ..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------------~~~ 68 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVH 68 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------------CSE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------------CCC
Confidence 45689999999999999999988889999999999999999999999999999998862 135
Q ss_pred CCHHHHHHHHhhhCCC
Q 011305 453 IRPEDVEIALKNTRPS 468 (489)
Q Consensus 453 It~eDf~~AL~~~~ps 468 (489)
|+.+||..|+++++|.
T Consensus 69 I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 69 VTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ECHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHccC
Confidence 9999999999999875
No 90
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.10 E-value=1.3e-10 Score=92.75 Aligned_cols=75 Identities=25% Similarity=0.322 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCC
Q 011305 375 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR 454 (489)
Q Consensus 375 ~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It 454 (489)
|+|+.++|.+||+.++++.+...++|++.||+.|+||||+||..+|++|++.++++. ..+|+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~ 62 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVHVT 62 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------CSEEC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------CCCCC
Confidence 789999999999999999988889999999999999999999999999999988751 13499
Q ss_pred HHHHHHHHhhhCC
Q 011305 455 PEDVEIALKNTRP 467 (489)
Q Consensus 455 ~eDf~~AL~~~~p 467 (489)
.+||..|++++..
T Consensus 63 ~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 63 QEDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
No 91
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.08 E-value=3.8e-10 Score=139.49 Aligned_cols=140 Identities=19% Similarity=0.300 Sum_probs=92.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH-HhCCcEEEEeccchhhhhccchHHHHHHHHHHHH---------------hcCCcE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVAT-ECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR---------------HHAPST 304 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~-el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~---------------~~~p~V 304 (489)
.++++||+||||||||++|+.+.. ..+.+++.++++...+ ...+...+.... ..+++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 357999999999999999955544 4477888888776532 233344443321 122469
Q ss_pred EEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC-------CcEEEEEEeCCCC-----cccHHHHhhccccc
Q 011305 305 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD-------ELVFVLAATNLPW-----ELDAAMLRRLEKRI 372 (489)
Q Consensus 305 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~-------~~viVIatTn~p~-----~Ld~al~rRf~~~i 372 (489)
|||||+|....++.... ..-+++.+++ ...+..... .++.+|+|+|.|. .++++++||| ..+
T Consensus 1340 lFiDEinmp~~d~yg~q----~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQ----NVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AIL 1413 (2695)
T ss_dssp EEEETTTCSCCCSSSCC----HHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEE
T ss_pred EEecccccccccccCch----hHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEE
Confidence 99999987443322111 1122333333 222322111 2488999999994 6999999999 779
Q ss_pred ccCCCCHHHHHHHHHHhcCC
Q 011305 373 LVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l~~ 392 (489)
.++.|+.+++..|+..++..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887743
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.03 E-value=4.9e-10 Score=100.54 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=69.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r 317 (489)
++..++|+||+|+|||+++++++..+ |...+++++.++... +...+|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 34689999999999999999999988 777888888776543 112357899999998754321
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC-CCCccc--HHHHhhcccccccCC
Q 011305 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWELD--AAMLRRLEKRILVPL 376 (489)
Q Consensus 318 ~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn-~p~~Ld--~al~rRf~~~i~~~~ 376 (489)
. ..++..++.....+..++|| ||+ .|..+. +++.+|+..-..+..
T Consensus 100 ----------~---~~l~~li~~~~~~g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 100 ----------Q---ALLFSIFNRFRNSGKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp ----------H---HHHHHHHHHHHHHTCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred ----------H---HHHHHHHHHHHHcCCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 1 22333332222222222444 555 454332 899999976655543
No 93
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.00 E-value=2.7e-09 Score=109.65 Aligned_cols=198 Identities=20% Similarity=0.226 Sum_probs=122.3
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEeccchhhhhc---
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVSKWR--- 283 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--~i~v~~s~l~~~~~--- 283 (489)
.+++|.......+.+.+.... .....+|++|++||||+++|++++...+.. |+.++|+.+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhh----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 568898888777776664422 223579999999999999999999987543 99999987643211
Q ss_pred --cch-------HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--c------CCC
Q 011305 284 --GDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SDE 346 (489)
Q Consensus 284 --g~~-------~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~------~~~ 346 (489)
|.. .......|+.|.. ++||||||+.+... ++..|+..++.-. . ..-
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQR-------------VQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCHH-------------HHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhCCHH-------------HHHHHHHHHHhCCcccCCCCcceee
Confidence 000 0001123444443 79999999998644 4556666665221 0 112
Q ss_pred cEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHH----HHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHH
Q 011305 347 LVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTE----ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 415 (489)
Q Consensus 347 ~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~----eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~D 415 (489)
.+.+|++||..- .+.+.+..|+.. +.+..|... +...++.+++...... ..+...+++...
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~~a 334 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYYRLSV-FQIYLPPLRERGKDVILLAEYFLKKFAKE-------YKKNCFELSEET 334 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTS-EEEECCCGGGSTTHHHHHHHHHHHHHHHH-------TTCCCCCBCHHH
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHHHhCC-eEEeCCChhhchhhHHHHHHHHHHHHHHH-------cCCCCCCcCHHH
Confidence 356788888641 244567777743 444444443 4445555554321100 001124577888
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 416 IRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 416 i~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
+..|....|.+++|.+.+.++..-.
T Consensus 335 ~~~L~~~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 335 KEYLMKQEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp HHHHHTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 8888888888888888887776544
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.88 E-value=1.3e-08 Score=102.02 Aligned_cols=187 Identities=15% Similarity=0.116 Sum_probs=111.7
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh----
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 279 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~---- 279 (489)
+....+.++|.+...+.|.+ +.. ..++|+||+|+|||++++.++++.+.+++++++....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 44456789999988888887 521 4799999999999999999999988778888875420
Q ss_pred -h--hhc------------------------------c---c------hHHHHHHHHHHHHhc--CCcEEEEchhhhHHh
Q 011305 280 -S--KWR------------------------------G---D------SEKLIKVLFELARHH--APSTIFLDEIDAIIS 315 (489)
Q Consensus 280 -~--~~~------------------------------g---~------~~~~l~~lf~~A~~~--~p~VL~IDEiD~l~~ 315 (489)
+ ... + . ....+..++...... .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 0 000 0 0 001233344333332 378999999999864
Q ss_pred hhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH---------HHHhhcccccccCCCCHHHHHHHH
Q 011305 316 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA---------AMLRRLEKRILVPLPDTEARRAMF 386 (489)
Q Consensus 316 ~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~---------al~rRf~~~i~~~~Pd~~eR~~IL 386 (489)
..... . ...+..+... ..++.+|.++.....+.. .+..|+...+.+++.+.++..+++
T Consensus 152 ~~~~~-~-----~~~l~~~~~~-------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 152 LRGVN-L-----LPALAYAYDN-------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp CTTCC-C-----HHHHHHHHHH-------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred cCchh-H-----HHHHHHHHHc-------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 21110 0 1122222221 123555666654321211 123355567889999999999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 011305 387 ESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 387 ~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~ 421 (489)
...+...+...+ +...+...+.|+.. -+..++.
T Consensus 219 ~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 219 RRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp HHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHH
T ss_pred HHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHH
Confidence 887643333322 23777888887643 4544443
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.87 E-value=3.9e-08 Score=98.29 Aligned_cols=190 Identities=16% Similarity=0.141 Sum_probs=111.0
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh----
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 279 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~---- 279 (489)
+...-+.++|.+...+.|.+.+.. ++.++|+||+|+|||++++.++++.+ .+++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 444557899999999999887643 15899999999999999999999886 6677664321
Q ss_pred --------h---hhc-------------------------cchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh
Q 011305 280 --------S---KWR-------------------------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323 (489)
Q Consensus 280 --------~---~~~-------------------------g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~ 323 (489)
. ... ......+..+...+....|.+|+|||++.+...... .
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~---~ 147 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR---G 147 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT---T
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc---c
Confidence 0 000 011222222323333234899999999998641000 0
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH---------HHHhhcccccccCCCCHHHHHHHHHHhcCCCC
Q 011305 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA---------AMLRRLEKRILVPLPDTEARRAMFESLLPSQT 394 (489)
Q Consensus 324 ~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~---------al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 394 (489)
. ..+...|-..++.. .++.+|.++.....+.. .+..|+...+.+++.+.++-.+++...+...+
T Consensus 148 ~---~~~~~~L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 148 G---KELLALFAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp T---HHHHHHHHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred h---hhHHHHHHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 0 11222222222211 23555555543211111 12335556788999999999999988765443
Q ss_pred CCCC-CCHHHHHHHhcCCcHHHHHHHH
Q 011305 395 GEES-LPYDLLVERTEGYSGSDIRLVS 420 (489)
Q Consensus 395 ~~~~-~dl~~La~~t~G~sg~Di~~l~ 420 (489)
...+ ..+..+...+.|+. .-+..++
T Consensus 221 ~~~~~~~~~~i~~~tgG~P-~~l~~~~ 246 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIP-GWLVVFG 246 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCH-HHHHHHH
Confidence 3322 24566777787754 3454444
No 96
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.85 E-value=2.3e-09 Score=99.88 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=62.2
Q ss_pred CCCCCccccCcHH----HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 204 PDVKWESIKGLEN----AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 204 ~~~~~~dliG~e~----~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
...+|+++++... +.+.+.+++... +. ...+.+++|+||||||||++|+++++++ +.+++.+++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY---EP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC---CS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh---hh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 3567999987553 333333333221 10 1123789999999999999999999988 6788889988
Q ss_pred chhhhhccchH-HHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 277 SVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 277 ~l~~~~~g~~~-~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
++......... ..+..++..... +.+|+|||++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 76544322110 001222332222 3699999997654
No 97
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.83 E-value=3.4e-09 Score=111.19 Aligned_cols=145 Identities=19% Similarity=0.162 Sum_probs=84.0
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHH-HHHhCCcEEEEec--c---chhhhhcc
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV-ATECKTTFFNISA--S---SVVSKWRG 284 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAral-A~el~~~~i~v~~--s---~l~~~~~g 284 (489)
|+|++.+|+.|.-.+.-.... ....-++||.|+||| ||++|+++ ++.+....+ +.. + .+.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEc
Confidence 999999988887555332110 111238999999999 99999999 766544333 221 1 11111000
Q ss_pred ch-HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------cCCCcEEEEEEeCCC
Q 011305 285 DS-EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------QSDELVFVLAATNLP 357 (489)
Q Consensus 285 ~~-~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------~~~~~viVIatTn~p 357 (489)
.+ ...-...+..|.. +|+||||++.+.++ .+..|++.|+.-. .-+..+.||||+|..
T Consensus 286 ~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 286 DRGWALRAGAAVLADG---GILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp SSSEEEEECHHHHTTT---SEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred CCCcccCCCeeEEcCC---CeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 00 0000112333333 89999999987543 4556666665211 334567899999976
Q ss_pred C-----------cccHHHHhhcccc-cccCCCCHH
Q 011305 358 W-----------ELDAAMLRRLEKR-ILVPLPDTE 380 (489)
Q Consensus 358 ~-----------~Ld~al~rRf~~~-i~~~~Pd~~ 380 (489)
. .|++++++||+.. +....|+.+
T Consensus 350 ~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPG 384 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHTTCSEEEETTC-----
T ss_pred cccCCCCCccccCCChHHhhheeeEEEecCCCChh
Confidence 4 6899999999654 344555543
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.76 E-value=5.8e-09 Score=98.16 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=80.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------C-CcEEEEeccchhhhhc----------cc-----hHHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--------K-TTFFNISASSVVSKWR----------GD-----SEKLIKVLFELAR 298 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--------~-~~~i~v~~s~l~~~~~----------g~-----~~~~l~~lf~~A~ 298 (489)
...|++|+||||||++|...+... | .+++..+..++..... .. ....+...+..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 468999999999999998875442 4 7777777665543221 11 011222221112
Q ss_pred hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCC
Q 011305 299 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 378 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd 378 (489)
...++||+|||++.+.+.+...... ..++..+.. .+...+-||.+|+.+..++.++++|+...++++.|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~--------~rll~~l~~--~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI--------PENVQWLNT--HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC--------CHHHHGGGG--TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCccccchh--------HHHHHHHHh--cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcc
Confidence 2346899999999997654221111 124444442 233345567788889999999999999999988765
Q ss_pred HHH
Q 011305 379 TEA 381 (489)
Q Consensus 379 ~~e 381 (489)
...
T Consensus 155 ~~~ 157 (199)
T 2r2a_A 155 MGM 157 (199)
T ss_dssp SCC
T ss_pred cCc
Confidence 433
No 99
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.70 E-value=4.9e-09 Score=84.39 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHH
Q 011305 380 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 459 (489)
Q Consensus 380 ~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~ 459 (489)
++|.+||+.++++.+...++|++.||+.|.||||+||.++|++|++.++++. ...|+.+||.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~------------------~~~i~~~df~ 62 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------------------RYVILQSDLE 62 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT------------------CSEECHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHHHH
Confidence 4689999999998888788999999999999999999999999999988751 1249999999
Q ss_pred HHHhhhC-CChhh-hHHHH
Q 011305 460 IALKNTR-PSAHL-HAHRY 476 (489)
Q Consensus 460 ~AL~~~~-ps~~~-~~~~y 476 (489)
.|++++. |+.+. ++..|
T Consensus 63 ~Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 63 EAYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp HHHHTTCC-----------
T ss_pred HHHHHHHcCcCChHHHHhh
Confidence 9999995 55543 44444
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.63 E-value=1.1e-08 Score=102.71 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=67.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec--cchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~--s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
+.+++.++|+||||||||++|.++|.+.+.++++++. .+....+..+.+..+..+.+...... +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 3445668999999999999999999876555444443 34333344455666666666665544 9999999998654
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHH
Q 011305 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 363 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~a 363 (489)
......... ..+...+++..+.++.... ++.+|+++| +...+++
T Consensus 198 ~~~~s~~G~-v~~~lrqlL~~L~~~~k~~-gvtVIlttn-p~s~dea 241 (331)
T 2vhj_A 198 AGGNTTSGG-ISRGAFDLLSDIGAMAASR-GCVVIASLN-PTSNDDK 241 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHH-TCEEEEECC-CSSCSSS
T ss_pred cccccccch-HHHHHHHHHHHHHHHHhhC-CCEEEEEeC-Ccccchh
Confidence 322000000 0122333444443332222 245677777 4444444
No 101
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.62 E-value=4.5e-08 Score=98.12 Aligned_cols=99 Identities=21% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCCCccccCcH----HHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEecc
Q 011305 205 DVKWESIKGLE----NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 276 (489)
Q Consensus 205 ~~~~~dliG~e----~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s 276 (489)
+.+|+++++.. .+.+.+.+++..+ + ..+..+++|+||||||||++|+++|+++ +.+++.++++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~---~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY---P------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC---S------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc---c------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 36799988643 2333333333321 1 0124799999999999999999999866 4788888888
Q ss_pred chhhhhccch-HHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 277 SVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 277 ~l~~~~~g~~-~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
++........ .......+.... .+.+|+|||++...
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 7765433211 111112222222 34799999996653
No 102
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.56 E-value=2.6e-07 Score=114.60 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=90.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~ 321 (489)
..++++.||+|||||++++++|+.+|.+++.++|++-.. ...+..+|..+.... +++++||++.+...--+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~evLs-- 715 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKVLS-- 715 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHHH--
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHHHH--
Confidence 368999999999999999999999999999999987543 234566666665544 89999999987543211
Q ss_pred hhhHHHHHHHHHHHHHhc---------CC-ccCCCcEEEEEEeCC----CCcccHHHHhhcccccccCCCCHHHHHHHHH
Q 011305 322 SEHEASRRLKTELLIQMD---------GL-TQSDELVFVLAATNL----PWELDAAMLRRLEKRILVPLPDTEARRAMFE 387 (489)
Q Consensus 322 ~~~~~~~~i~~~LL~~ld---------g~-~~~~~~viVIatTn~----p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~ 387 (489)
...+.+..+...+. |. ..-.....|++|.|. ...|++++++|| +.+.+..||.+...+|+-
T Consensus 716 ----~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 716 ----AVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp ----HHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 01111122222221 10 011234556777773 346999999999 679999999998888753
No 103
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.54 E-value=7.3e-08 Score=90.75 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=63.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~ 320 (489)
..+++||+||||||||++|.++|+.+...++.+..+.. ..+ +... ....|++|||+|.-.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~l--~~~kIiiLDEad~~~------ 116 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEPL--TDTKVAMLDDATTTC------ 116 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGGG--TTCSSEEEEEECHHH------
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hccc--CCCCEEEEECCCchh------
Confidence 34679999999999999999999998765443211100 000 1111 123599999998421
Q ss_pred chhhHHHHHHHHHHHHHhcCCc----c--CC----CcEEEEEEeCCC---CcccHHHHhhcccccccCCC
Q 011305 321 RSEHEASRRLKTELLIQMDGLT----Q--SD----ELVFVLAATNLP---WELDAAMLRRLEKRILVPLP 377 (489)
Q Consensus 321 ~~~~~~~~~i~~~LL~~ldg~~----~--~~----~~viVIatTn~p---~~Ld~al~rRf~~~i~~~~P 377 (489)
.+.+...+-..++|.. . +. ....+|.|||.+ +.--+.|.+|+ ..+.|+.|
T Consensus 117 ------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~ 179 (212)
T 1tue_A 117 ------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNA 179 (212)
T ss_dssp ------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSC
T ss_pred ------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCC
Confidence 1122334555666641 0 01 112356688875 22336788898 44666643
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.33 E-value=4.7e-06 Score=84.00 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=90.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CC-cEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhh-HHhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KT-TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA-IISQ 316 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~-~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~-l~~~ 316 (489)
.+.+||+||+|.||++.++.+++.+ +. ++..+... +. .+....+..+-.........|++|||++. +...
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~ 92 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN--TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAA 92 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT--CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTT
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC--CCHHHHHHHhcCcCCccCCeEEEEECCCCCCChH
Confidence 4689999999999999999999876 32 22222111 10 12222222222222233457999999987 5321
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-----CCcccHHHHhhcccccccCCCCHHHHHHHHHHhcC
Q 011305 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-----PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~-----p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
..+.|+..++.. ..+.++|+++++. ...+.+++.+|+ ..+.+..++.++....++..+.
T Consensus 93 -------------~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 93 -------------INEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp -------------HHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHH
Confidence 346677877633 3344444444431 235778899998 5688888899999989988887
Q ss_pred CCCCCCCC-CHHHHHHHhcC
Q 011305 392 SQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 392 ~~~~~~~~-dl~~La~~t~G 410 (489)
..+...+. .++.++..+.|
T Consensus 157 ~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 157 QLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HTTCEECHHHHHHHHHSSTT
T ss_pred HcCCCCCHHHHHHHHHHhch
Confidence 76655333 24445554443
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.30 E-value=1.1e-06 Score=106.16 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=78.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh----hhhc------------cchHHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----SKWR------------GDSEKLIKVLFELARH 299 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~----~~~~------------g~~~~~l~~lf~~A~~ 299 (489)
..++++++|+||||||||+||.+++.+. |.....++..+.. .... ...+..+..++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 4567899999999999999999998876 5667777765432 1111 2345677777888888
Q ss_pred cCCcEEEEchhhhHHhhhc---ccchhhH-HHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 300 HAPSTIFLDEIDAIISQRG---EARSEHE-ASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 300 ~~p~VL~IDEiD~l~~~r~---~~~~~~~-~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.+|++|+||+++.+.+... .....+. ...+++.++|..|.+...... +.|| +||..
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEE-EEECE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEE-EEccc
Confidence 9999999999998876431 1111111 134567777777776654443 4444 55543
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.23 E-value=1.9e-06 Score=107.83 Aligned_cols=137 Identities=21% Similarity=0.331 Sum_probs=85.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeccchhhhhccchHHHHHHHHHHH----Hh------------cCCcE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELA----RH------------HAPST 304 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~------------~~p~V 304 (489)
.+++||+||||||||++++.+...+ +.+++.++++.-. ....+...+... +. .+..|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4789999999999998876655544 6677888886543 223343334321 00 11259
Q ss_pred EEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC-------CCcEEEEEEeCCCC-----cccHHHHhhccccc
Q 011305 305 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-------DELVFVLAATNLPW-----ELDAAMLRRLEKRI 372 (489)
Q Consensus 305 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~-------~~~viVIatTn~p~-----~Ld~al~rRf~~~i 372 (489)
+||||++.-..+.-+... .-.++.+++..- +.... -..+.+|+|+|.|. .+++++.||| ..+
T Consensus 1378 lFiDDiNmp~~D~yGtQ~----~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi 1451 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKYGTQR----VITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PIL 1451 (3245)
T ss_dssp EEETTTTCCCCCTTSCCH----HHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEE
T ss_pred EEecccCCCCcccccccc----HHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEE
Confidence 999999864333211111 122333333221 11111 13577899999883 4999999999 559
Q ss_pred ccCCCCHHHHHHHHHHhc
Q 011305 373 LVPLPDTEARRAMFESLL 390 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l 390 (489)
.++.|+.++...|+..++
T Consensus 1452 ~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999976544
No 107
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.21 E-value=1.7e-06 Score=84.67 Aligned_cols=29 Identities=41% Similarity=0.567 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~ 268 (489)
++.++++|+||||||||++|+++|+.+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 33468999999999999999999998654
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.20 E-value=6.2e-06 Score=103.20 Aligned_cols=136 Identities=16% Similarity=0.146 Sum_probs=88.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~ 322 (489)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-.. ...+..+|.-+... .+..++||++.+...--+.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLSv-- 675 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEERILSA-- 675 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCHHHHHH--
Confidence 56789999999999999999999999999999986432 23455566555544 3799999999875431100
Q ss_pred hhHHHHHHHHHHHHH-----hc-CC-ccCCCcEEEEEEeCC----CCcccHHHHhhcccccccCCCCHHHHHHHHHH
Q 011305 323 EHEASRRLKTELLIQ-----MD-GL-TQSDELVFVLAATNL----PWELDAAMLRRLEKRILVPLPDTEARRAMFES 388 (489)
Q Consensus 323 ~~~~~~~i~~~LL~~-----ld-g~-~~~~~~viVIatTn~----p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~ 388 (489)
-......++..+... ++ |. ..-.....|++|.|. ...|++++++|| +.+.+..||.+...+|+-.
T Consensus 676 v~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 676 VSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHHH
Confidence 000011112222211 01 21 111234556777773 246999999999 6699999999888887543
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.18 E-value=1.2e-05 Score=73.83 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=24.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.+.|.||+|+||||+++.++..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998865443
No 110
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.03 E-value=1.4e-05 Score=84.19 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=85.9
Q ss_pred CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE---------eC---CCCcccHHHHhhcc
Q 011305 302 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA---------TN---LPWELDAAMLRRLE 369 (489)
Q Consensus 302 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat---------Tn---~p~~Ld~al~rRf~ 369 (489)
|.|+||||+|.|. ....+.|+..|+.. ...++|+++ ++ .+..+++.+++||.
T Consensus 296 ~~VliIDEa~~l~-------------~~a~~aLlk~lEe~---~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-------------IECFTYLHRALESS---IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCB-------------HHHHHHHHHHTTST---TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcC-------------HHHHHHHHHHhhcc---CCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence 4699999999984 23667888888733 233555454 22 16679999999997
Q ss_pred cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHh-cCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCC
Q 011305 370 KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERT-EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 447 (489)
Q Consensus 370 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t-~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~ 447 (489)
. +.|+.|+.++..++++..+.......+. .+..++... .| +++..-.+++.|...+.. ++.
T Consensus 360 ~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~------~~~--------- 422 (456)
T 2c9o_A 360 I-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKI------NGK--------- 422 (456)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHH------TTC---------
T ss_pred e-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhh------cCC---------
Confidence 7 6999999999999999887544433222 244555555 33 556555555555443322 111
Q ss_pred CCCCCCCHHHHHHHHhhhC
Q 011305 448 PQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 448 ~~~~~It~eDf~~AL~~~~ 466 (489)
..|+.+|+.+++..+-
T Consensus 423 ---~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 423 ---DSIEKEHVEEISELFY 438 (456)
T ss_dssp ---SSBCHHHHHHHHHHSC
T ss_pred ---CccCHHHHHHHHHHhc
Confidence 2499999999987553
No 111
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.02 E-value=1.6e-06 Score=89.31 Aligned_cols=115 Identities=15% Similarity=0.082 Sum_probs=69.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHh-hh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS-QR 317 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~-~r 317 (489)
.+++..++|+||||+||||++++++..++..++.+...+- .....+. ...+..++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg------~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELG------VAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHG------GGTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHH------HhcchhHHHHHHHHHHHHHHh
Confidence 4566789999999999999999999998877665433221 0011111 122346789999998865 22
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHh--hcccccccC
Q 011305 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVP 375 (489)
Q Consensus 318 ~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~ 375 (489)
......... ....+...++|. +.|+.+||+++.+ +++++ |++..+...
T Consensus 234 ~l~~~~~~~---~~~~l~~~ldG~------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l 283 (377)
T 1svm_A 234 DLPSGQGIN---NLDNLRDYLDGS------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSV 283 (377)
T ss_dssp TCCCCSHHH---HHHTTHHHHHCS------SCEEECCSSSCCE-EECCCCEEEEECSCCC
T ss_pred hccccCcch---HHHHHHHHhcCC------CeEeeccCchhhH-HHhhcCcccChhHHhh
Confidence 111101110 123344555543 3467789999888 45555 565555443
No 112
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.94 E-value=0.00017 Score=77.69 Aligned_cols=168 Identities=14% Similarity=0.098 Sum_probs=93.7
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHH-------hCCcEEEEeccch
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-------CKTTFFNISASSV 278 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~e-------l~~~~i~v~~s~l 278 (489)
.....++|.+...+.|.+.+... ....+.++|+||+|+|||++|+.+++. ....++.++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 34568999999999999877431 122367899999999999999999753 2122344433221
Q ss_pred -----hhhh------c-----------cchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHH
Q 011305 279 -----VSKW------R-----------GDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 335 (489)
Q Consensus 279 -----~~~~------~-----------g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL 335 (489)
.... . .........+...... .+|.+|+||+++... .+
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------------~l 251 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------------VL 251 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------HH
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------HH
Confidence 1000 0 0111122222222222 267999999996421 11
Q ss_pred HHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccccc---CCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 336 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILV---PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 336 ~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~---~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
..+ ..+..||.||..+..... . . ...+.+ ...+.++-.+++...+.............+++.+.|..
T Consensus 252 ~~l------~~~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 252 KAF------DSQCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp HTT------CSSCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred HHh------cCCCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 111 122345667765432211 0 0 122233 35788888999988775422222344677888888764
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.80 E-value=0.00015 Score=67.72 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
+.++..++|.||+|+|||++++.++... +.+++.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4455779999999999999999999654 556666654
No 114
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.75 E-value=0.00039 Score=80.69 Aligned_cols=172 Identities=11% Similarity=0.047 Sum_probs=98.9
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEecc
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 276 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s 276 (489)
.+.....++|.+...++|.+.+...- ...+-+.|+|+.|+|||+||+.+++.. ...++.++.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 34445679999999999998874321 223568899999999999999998752 1223344433
Q ss_pred chhh-----h----------------hccchHHHHHHHHHHHHhc--CCcEEEEchhhhHHhhhcccchhhHHHHHHHHH
Q 011305 277 SVVS-----K----------------WRGDSEKLIKVLFELARHH--APSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (489)
Q Consensus 277 ~l~~-----~----------------~~g~~~~~l~~lf~~A~~~--~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 333 (489)
.... . ........+...+...... ++.+|+||+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------
Confidence 2100 0 0001112222223222222 36899999997431
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCC-CCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL-PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 334 LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~-Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
.++.+ .....||.||..+..... . ..-...+.++. .+.++-.+++................+|++.+.|..
T Consensus 250 ---~~~~~---~~~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 250 ---VLKAF---DNQCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp ---HHTTT---CSSCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred ---HHHhh---cCCCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 11112 122346667776543211 0 11234566665 788898999988774433333344677888888764
No 115
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.73 E-value=8.7e-05 Score=74.43 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=52.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccchh-hh-------hcc----------------c
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV-SK-------WRG----------------D 285 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~l~-~~-------~~g----------------~ 285 (489)
++++..++|+||||+|||+++..++... +.++++++..... .. ..| .
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 4566789999999999999999999875 5678888775421 00 000 1
Q ss_pred hH---HHHHHHHHHHHh-cCCcEEEEchhhhHHhh
Q 011305 286 SE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 286 ~~---~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~ 316 (489)
.+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 11 123334444444 67899999999998753
No 116
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.73 E-value=6e-05 Score=71.27 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=50.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH--h-------CCcEEEEeccchh--h------hhcc----------------c
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATE--C-------KTTFFNISASSVV--S------KWRG----------------D 285 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~e--l-------~~~~i~v~~s~l~--~------~~~g----------------~ 285 (489)
+.++..++|+||||+|||++++.++.. + +...++++..+.. . ...+ .
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 456678999999999999999999985 2 4567777765410 0 0000 0
Q ss_pred hH---HHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 286 SE---KLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 286 ~~---~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
.. ..+..+........|.+|+|||+..+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11 11222334444567899999999887643
No 117
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.69 E-value=0.0001 Score=75.07 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=53.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----------------hccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~----------------~~g~~~~~l~~lf~~A~ 298 (489)
++.++.-++|+||||+|||+|+..++..+ +.++++++..+.... .....+..+..+-...+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 35566789999999999999999999875 667888876543211 01122333333333344
Q ss_pred hcCCcEEEEchhhhHHh
Q 011305 299 HHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~ 315 (489)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 56789999999988875
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.69 E-value=0.00013 Score=74.63 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=52.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh----c------------cchHHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----R------------GDSEKLIKVLFELARH 299 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~----~------------g~~~~~l~~lf~~A~~ 299 (489)
++++..++|+||||+|||++|..++... +.++++++...-.... . ...+..+..+-...+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 4566789999999999999999998765 6788888765422111 0 1122333333333344
Q ss_pred cCCcEEEEchhhhHHh
Q 011305 300 HAPSTIFLDEIDAIIS 315 (489)
Q Consensus 300 ~~p~VL~IDEiD~l~~ 315 (489)
..+.+|+||.+..+.+
T Consensus 151 ~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTP 166 (366)
T ss_dssp TCCSEEEEECTTTCCC
T ss_pred CCCCEEEEeChHHhcc
Confidence 6689999999999874
No 119
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.69 E-value=0.00021 Score=66.36 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=33.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.+.++.-++|+||||+|||++++.++...+.++++++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3566678999999999999999999986677888887654
No 120
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.67 E-value=0.00017 Score=72.91 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=52.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccchhh-h-------hcc----------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS-K-------WRG---------------- 284 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~l~~-~-------~~g---------------- 284 (489)
.++++.-++|+||||+|||+++..+|... +.++++++...... . ..|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 35666778999999999999999999873 56778887654210 0 000
Q ss_pred chH---HHHHHHHHHHHh--cCCcEEEEchhhhHHhh
Q 011305 285 DSE---KLIKVLFELARH--HAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 285 ~~~---~~l~~lf~~A~~--~~p~VL~IDEiD~l~~~ 316 (489)
..+ ..+..+...... ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 011 122223344444 66789999999998754
No 121
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.66 E-value=0.00014 Score=68.02 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEecc
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS 276 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s 276 (489)
..++.-+.|.||+|+||||+++.++... +...++++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 4556779999999999999999999854 2336666654
No 122
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.66 E-value=9.5e-05 Score=75.17 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=52.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh----cc------------chHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG------------DSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~----~g------------~~~~~l~~lf~~A~ 298 (489)
.+.++..++|+||||+|||+++..++... +.++++++........ .| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 34566789999999999999999998765 5677777764322110 11 12223333333344
Q ss_pred hcCCcEEEEchhhhHHh
Q 011305 299 HHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~ 315 (489)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
No 123
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.63 E-value=0.00033 Score=66.31 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=27.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHH--HH--hCCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVA--TE--CKTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA--~e--l~~~~i~v~~ 275 (489)
..++..+.|.||+|+||||+++.++ .. .+...+.++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 4566779999999999999999998 32 2444455543
No 124
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.62 E-value=4.3e-05 Score=68.92 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=31.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..++|.|+||+||||+++++++.++.+++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 578999999999999999999999999887775544
No 125
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.54 E-value=0.0002 Score=72.91 Aligned_cols=77 Identities=26% Similarity=0.341 Sum_probs=51.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh----cc-----------chHHHHHHHHH-HHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG-----------DSEKLIKVLFE-LARH 299 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~----~g-----------~~~~~l~~lf~-~A~~ 299 (489)
++++..++|+||||+|||++|..++... +.++++++........ .| .....+..+.. ..+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 4566789999999999999999998765 6778888874321110 00 11122222222 3345
Q ss_pred cCCcEEEEchhhhHHh
Q 011305 300 HAPSTIFLDEIDAIIS 315 (489)
Q Consensus 300 ~~p~VL~IDEiD~l~~ 315 (489)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6789999999999874
No 126
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.47 E-value=6.4e-05 Score=68.32 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
++.++|.|||||||||+++.+|+.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 46799999999999999999999999988754
No 127
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.47 E-value=0.0002 Score=75.29 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=35.7
Q ss_pred hhhcCCCCCCCcccc-CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 198 DIIRGSPDVKWESIK-GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 198 ~~~~~~~~~~~~dli-G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+..++.+.+|+++- ++..+...+...+.. ....++|.|+||||||+++.+++..+
T Consensus 13 ~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 13 GLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp --------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455566778888885 555555555544422 12389999999999999999999877
No 128
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.46 E-value=0.00019 Score=68.38 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=44.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc-------hhhhhccch-----HHHHHHHHHHHHh----cCC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS-------VVSKWRGDS-----EKLIKVLFELARH----HAP 302 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~-------l~~~~~g~~-----~~~l~~lf~~A~~----~~p 302 (489)
+.-++++||+|+||||++..++..+ +..++.+.... +.+. .|-. -.....++..+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 4567889999999999999888776 56666664322 1111 1100 0011234554443 347
Q ss_pred cEEEEchhhhH
Q 011305 303 STIFLDEIDAI 313 (489)
Q Consensus 303 ~VL~IDEiD~l 313 (489)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999765
No 129
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.44 E-value=0.00031 Score=85.15 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=56.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc----------------cchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----------------GDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~----------------g~~~~~l~~lf~~A~ 298 (489)
+.+++..++|+||||||||++|.+++.+. |.+.++++..+...... +..+...+-.....+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 35677899999999999999999998765 78888888876543222 111222333334445
Q ss_pred hcCCcEEEEchhhhHHhh
Q 011305 299 HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~~ 316 (489)
..+|.+|+||++..+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 567999999999998654
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.41 E-value=0.0003 Score=72.84 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=49.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccchhhh--------hcc----------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVSK--------WRG---------------- 284 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~l~~~--------~~g---------------- 284 (489)
++.++.-++|+||||+|||+|++.++-.. +...++++..+.... ..|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 35666779999999999999999876433 344777776542110 001
Q ss_pred ch---HHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 285 DS---EKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 285 ~~---~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
.. ...+..+........|.+|+||++-.+...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 01 112223333444567899999999887653
No 131
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.40 E-value=0.00046 Score=70.02 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
..++.-+.|+||+|+|||+|++.++... +...++++..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 5566779999999999999999999886 24567777644
No 132
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=9e-05 Score=68.58 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=29.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.++..++|.|||||||||+++.+++.++.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4557899999999999999999999999887643
No 133
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.39 E-value=0.0014 Score=70.43 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=53.1
Q ss_pred cEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC--cccHHHHhhcccccccCCCCHH
Q 011305 303 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 380 (489)
Q Consensus 303 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~--~Ld~al~rRf~~~i~~~~Pd~~ 380 (489)
-+|+|||+..+..... ......+..+.. ..+.-++-+|.+|.+|. .++..+++-|...+.+...+..
T Consensus 345 ivvVIDE~~~L~~~~~------~~~~~~L~~Iar-----~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG------KKVEELIARIAQ-----KARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC------HHHHHHHHHHHH-----HCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh------HHHHHHHHHHHH-----HHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 4899999998875421 111222233332 23445688899999997 7999999999999999999998
Q ss_pred HHHHHHH
Q 011305 381 ARRAMFE 387 (489)
Q Consensus 381 eR~~IL~ 387 (489)
+...|+.
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8887874
No 134
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.38 E-value=0.00038 Score=69.42 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=51.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------------C----CcEEEEeccchh-hh----h---cc------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------------K----TTFFNISASSVV-SK----W---RG------ 284 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------------~----~~~i~v~~s~l~-~~----~---~g------ 284 (489)
+++++.-++|+||||+|||+++..++... | .++++++...-. .. + .|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34566779999999999999999999763 2 577888765421 00 0 00
Q ss_pred ----------chH---HHHHHHHHHHHh-cCCcEEEEchhhhHHhh
Q 011305 285 ----------DSE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 285 ----------~~~---~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~ 316 (489)
..+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 111 122233344444 56789999999998753
No 135
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.38 E-value=0.00062 Score=65.54 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=33.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345679999999999999999999999877777777655
No 136
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.36 E-value=0.00061 Score=67.16 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.+..++|.||||+||||+++.++++++..++.|++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 35678999999999999999999998656677776444
No 137
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.34 E-value=0.0021 Score=68.98 Aligned_cols=166 Identities=12% Similarity=0.003 Sum_probs=89.3
Q ss_pred cCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHH----HhCCcE---EEEeccch-----h
Q 011305 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT----ECKTTF---FNISASSV-----V 279 (489)
Q Consensus 212 iG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~----el~~~~---i~v~~s~l-----~ 279 (489)
+|.+..+++|.+.+...- ....+.|.|+|+.|+|||+||+.+++ .....| +.++.+.. .
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 599999999998874320 11236788999999999999999997 332222 23333221 0
Q ss_pred -------hhhcc------------chHHHHHHHHHHHHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011305 280 -------SKWRG------------DSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (489)
Q Consensus 280 -------~~~~g------------~~~~~l~~lf~~A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld 339 (489)
..... .....+...+...... ++.+|+||+++... .+ .+.. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--------------~~--~~~~-~- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--------------TI--RWAQ-E- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--------------HH--HHHH-H-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--------------hh--cccc-c-
Confidence 00000 0111122233333333 36899999997631 01 1111 1
Q ss_pred CCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC--CCHHHHHHHhcCCc
Q 011305 340 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES--LPYDLLVERTEGYS 412 (489)
Q Consensus 340 g~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~--~dl~~La~~t~G~s 412 (489)
.+ ..||.||....... . .......+.++..+.++-.+++............ .....+++.+.|..
T Consensus 264 ----~g--s~ilvTTR~~~v~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 ----LR--LRCLVTTRDVEISN-A-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ----TT--CEEEEEESBGGGGG-G-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ----CC--CEEEEEcCCHHHHH-H-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 12 23556776533211 0 0112245788888999999999988543321011 01345666677653
No 138
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.34 E-value=0.0037 Score=65.35 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-----------
Q 011305 215 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------- 280 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~----------- 280 (489)
+.+++.+.+.+...+..+........++..+++.|++|+||||++..+|..+ |..+..+++.....
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 4555566555554333211111112346789999999999999999999876 66666666542211
Q ss_pred ---------hhccchHHHHHHHHHHHHhcCCcEEEEchhhh
Q 011305 281 ---------KWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (489)
Q Consensus 281 ---------~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~ 312 (489)
....+....+...+..+....+.+++||..-.
T Consensus 153 ~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 153 RYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGR 193 (443)
T ss_dssp GGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCC
T ss_pred hcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 01123344556667777776779999998843
No 139
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.33 E-value=0.0016 Score=61.38 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=30.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
...++..++|.||||+|||+++..++... +.++++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 35566789999999999999998887654 5667766643
No 140
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.29 E-value=0.00031 Score=64.68 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
.-++++||+|+||||++..++..+ +.+++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457899999999999996666654 55555443
No 141
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.27 E-value=0.00017 Score=65.33 Aligned_cols=32 Identities=41% Similarity=0.697 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|+|+||+||||+++.+++.++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 46799999999999999999999999877643
No 142
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.26 E-value=0.00018 Score=64.13 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.|+|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998876544
No 143
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.25 E-value=0.00023 Score=64.74 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.+..++|.|+||+||||+++.+++.++.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 346799999999999999999999999877653
No 144
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.24 E-value=0.00017 Score=64.55 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.+++|.|+|||||||+++.+|+.++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999999988753
No 145
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.21 E-value=0.00022 Score=64.28 Aligned_cols=29 Identities=34% Similarity=0.642 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.++|.|||||||||+++.+|+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 68999999999999999999999987764
No 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.21 E-value=0.00018 Score=65.33 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
..|+|.|+|||||||+++.+++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3589999999999999999999999887643
No 147
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.17 E-value=0.00029 Score=63.02 Aligned_cols=29 Identities=31% Similarity=0.750 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
..+.|.||+||||||+++.++..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 56999999999999999999999987654
No 148
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.17 E-value=0.0002 Score=65.39 Aligned_cols=32 Identities=38% Similarity=0.542 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH-hCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE-CKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e-l~~~~i~v 273 (489)
+..++|+|+|||||||+++.+++. +|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 457999999999999999999999 68766543
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.16 E-value=0.00024 Score=64.75 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=32.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.++..+.|.||+|+||||+++.++...+...+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 445679999999999999999999987777777776554
No 150
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.16 E-value=0.0006 Score=81.69 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=53.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh----hhcc------------chHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRG------------DSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~----~~~g------------~~~~~l~~lf~~A~ 298 (489)
++.++..++|+||||+|||++|..+|..+ +.++++++..+... ...| ..+.....+-...+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35667789999999999999999998876 56788888654331 1111 11222222222233
Q ss_pred hcCCcEEEEchhhhHHh
Q 011305 299 HHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~ 315 (489)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999874
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.15 E-value=0.0016 Score=64.84 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=55.1
Q ss_pred HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------hh----
Q 011305 217 AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KW---- 282 (489)
Q Consensus 217 ~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~~---- 282 (489)
+++.+.+.+...+.......-...++..++|.||+|+||||++..+|..+ +..+..+++..... .|
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHc
Confidence 45555555544332221111013455778999999999999999999876 55565555432110 00
Q ss_pred ---------ccchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 283 ---------RGDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 283 ---------~g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
.++........+..+....|.+++||+.-
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11222233334555566778999999884
No 152
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.14 E-value=6.1e-05 Score=63.66 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=67.0
Q ss_pred hHHHHHHHHhhhhhhhhhhhccccCCCcee--eeccCCCcccceeeEEEecc-ccc-hhh-----hhhHHHHHHHHHHHH
Q 011305 14 IRALTKCLKEGIITSRFIISKFIIGPPHAF--FYSFGSPPFQFSLAIQLAGC-CSV-ETE-----RERFFFFLIFILSAI 84 (489)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~~~~~~~~~ 84 (489)
+..+..||+.+|.+++-+|.-|+.|.++-+ +|..|+.++..|++|.++|+ |+. +-| .+||..+|-.+..||
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL 91 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRL 91 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999999998 99999999999999999985 322 222 455999999999999
Q ss_pred HHHHhhCCCcc
Q 011305 85 SLLLRLSNLSA 95 (489)
Q Consensus 85 ~~~~~~~~~~~ 95 (489)
..+=-.+.+|+
T Consensus 92 ~~Le~~~~~~~ 102 (116)
T 2dl1_A 92 EILEKGLATSL 102 (116)
T ss_dssp HHHHHHHCSSC
T ss_pred HHHHhcCCCcc
Confidence 64443444333
No 153
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.13 E-value=0.00025 Score=64.34 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..|+|.|+|||||||+++.+++.++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3578999999999999999999999987643
No 154
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.13 E-value=0.00094 Score=64.58 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEeccchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVV 279 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e---l~~~~i~v~~s~l~ 279 (489)
+.-|+|.|+||+||||+++.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 357899999999999999999998 68888767665443
No 155
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.13 E-value=0.00028 Score=65.13 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+||+||||+++.+++.++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 35689999999999999999999999886544
No 156
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.13 E-value=0.0028 Score=59.73 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=51.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEeccchhhhhc------------------------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISASSVVSKWR------------------------------ 283 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~e----l~~~~i~v~~s~l~~~~~------------------------------ 283 (489)
+.+++.-++|+|+||+|||++|..+|.. .+.++++++...-.....
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence 4566678999999999999999887653 267777776432111000
Q ss_pred ------------cchHHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 284 ------------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 284 ------------g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
......+..+........+.+++||.+..+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~ 150 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhh
Confidence 011223344445556677899999999888654
No 157
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.12 E-value=0.00027 Score=64.40 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
++..++|.|+|||||||+++.+++.++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 346799999999999999999999999876544
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.10 E-value=0.0063 Score=64.74 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=50.8
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC--cccHHHHhhcccccccCCCCHHH
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTEA 381 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~--~Ld~al~rRf~~~i~~~~Pd~~e 381 (489)
+|+|||+..+..... .....++..+... .+.-.+-+|.+|.+|. .++..+++.|...+.+...+..+
T Consensus 300 vlvIDE~~~ll~~~~------~~~~~~l~~Lar~-----gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 300 VVLVDEFADLMMTVG------KKVEELIARLAQK-----ARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEETHHHHHHHHH------HHHHHHHHHHHHH-----CGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHH
T ss_pred EEEEeCHHHHHhhhh------HHHHHHHHHHHHH-----hhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHH
Confidence 899999988764211 1112222223222 1233477788999987 58889999999999999999999
Q ss_pred HHHHHHH
Q 011305 382 RRAMFES 388 (489)
Q Consensus 382 R~~IL~~ 388 (489)
...|+..
T Consensus 369 sr~ilg~ 375 (512)
T 2ius_A 369 SRTILDQ 375 (512)
T ss_dssp HHHHHSS
T ss_pred HHHhcCC
Confidence 8888764
No 159
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.08 E-value=0.00027 Score=62.63 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.++|.||||+||||+++.+ +.+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887653
No 160
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.07 E-value=0.0011 Score=66.21 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=49.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeccchhhh-h---cc------------chHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK-W---RG------------DSEKLIKVLFEL 296 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s~l~~~-~---~g------------~~~~~l~~lf~~ 296 (489)
++.++ -++|+||||+|||+|+-.++... +..+++++..+-... + .| ..+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 34454 58999999999999988876654 567888887542211 0 01 122220122222
Q ss_pred ---HHhcCCcEEEEchhhhHHh
Q 011305 297 ---ARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 297 ---A~~~~p~VL~IDEiD~l~~ 315 (489)
.+...|.+|+||-+..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2456789999999999975
No 161
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.06 E-value=0.00044 Score=64.80 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+|||||||+++.+++.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 46799999999999999999999999876543
No 162
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.06 E-value=0.00035 Score=63.28 Aligned_cols=30 Identities=30% Similarity=0.524 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
+..++|.|+|||||||+++.+++.++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 356899999999999999999999987654
No 163
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.05 E-value=0.00035 Score=67.47 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
.++|.|||||||||+|+.+|+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999988876654
No 164
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.03 E-value=0.00032 Score=63.28 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
+..|+|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356899999999999999999999999877
No 165
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.03 E-value=0.00043 Score=61.82 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
..|+|.|+|||||||+++.+++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 468999999999999999999999987664
No 166
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.00 E-value=0.0073 Score=62.97 Aligned_cols=73 Identities=18% Similarity=0.074 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh----------hh----------ccchHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------KW----------RGDSEKLIKVLFELA 297 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~----------~~----------~g~~~~~l~~lf~~A 297 (489)
++..+++.||+|+||||++..+|..+ +..+..+++.-... .. ...........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45778999999999999999999876 66666665432110 00 011222334445555
Q ss_pred HhcCCcEEEEchhhhH
Q 011305 298 RHHAPSTIFLDEIDAI 313 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~l 313 (489)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5557899999988543
No 167
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.00 E-value=0.0075 Score=56.09 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=66.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc---------chhhhhc-------------c----chHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS---------SVVSKWR-------------G----DSEKLIKVL 293 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s---------~l~~~~~-------------g----~~~~~l~~l 293 (489)
..|++|+++|.||||+|-++|-.. |.++..+... .+..... . .........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 468899999999999999998876 7777766221 1222220 0 012333444
Q ss_pred HHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcc
Q 011305 294 FELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE 369 (489)
Q Consensus 294 f~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~ 369 (489)
+..++. ....+|+|||+.....-.- .+ ...++..+. .++...-||.|+|.+ ++++...-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~---l~-------~~ev~~~l~---~Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY---LP-------LEEVISALN---ARPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS---SC-------HHHHHHHHH---TSCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC---CC-------HHHHHHHHH---hCcCCCEEEEECCCC---cHHHHHhCc
Confidence 555443 4478999999976533211 10 123445554 344445677788874 566666544
Q ss_pred ccc
Q 011305 370 KRI 372 (489)
Q Consensus 370 ~~i 372 (489)
.+-
T Consensus 173 ~VT 175 (196)
T 1g5t_A 173 TVS 175 (196)
T ss_dssp EEE
T ss_pred cee
Confidence 433
No 168
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.98 E-value=0.00039 Score=63.51 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35799999999999999999999999765543
No 169
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.98 E-value=0.00045 Score=62.54 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+|||||||+++.+++.++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35789999999999999999999999766543
No 170
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.97 E-value=0.00058 Score=62.99 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..|+|.|++|+||||+++.+++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999877654
No 171
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.97 E-value=0.0004 Score=62.29 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-HhCCc
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT-ECKTT 269 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~-el~~~ 269 (489)
..++|.|+||+||||+++.+++ .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 5689999999999999999998 45543
No 172
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.97 E-value=0.00047 Score=62.43 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..++|.|+||+||||+++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999887
No 173
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.96 E-value=0.00047 Score=66.09 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
++..|+|.||||+||||+++.+++.++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 457899999999999999999999998766543
No 174
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.96 E-value=0.0004 Score=65.44 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..++|.|+|||||||+++.+++.++.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 46799999999999999999999998876643
No 175
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.96 E-value=0.00082 Score=72.77 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
..+++.||||||||+++.+++..+ +.+++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 578999999999999999998865 56665554
No 176
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.96 E-value=0.00042 Score=64.59 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.|+|.|||||||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998876654
No 177
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.96 E-value=0.00067 Score=60.92 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+..++|.||+|+||||+++.++..+|..++ +..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 457899999999999999999999886554 44443
No 178
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.95 E-value=0.0005 Score=63.34 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+|||||||+++.+++.++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 35689999999999999999999998766544
No 179
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.95 E-value=0.00043 Score=61.58 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.|+|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999987764
No 180
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.95 E-value=0.00042 Score=64.52 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.|+|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998876644
No 181
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.94 E-value=0.00067 Score=64.28 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+|||||||+++.+++.++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 46799999999999999999999999776543
No 182
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.93 E-value=0.00044 Score=69.45 Aligned_cols=34 Identities=32% Similarity=0.538 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s 276 (489)
+.++|.||+|||||++++.+|+.++..++.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 5789999999999999999999999888877654
No 183
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.92 E-value=0.00068 Score=64.21 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=32.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
...++-|+|.||||+||+|.|+.|++.++.+ .++..++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 3455778999999999999999999999875 456556554
No 184
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.91 E-value=0.0065 Score=59.02 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-++|+||+|+|||+++..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4456779999999999999999998754
No 185
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.87 E-value=0.00044 Score=70.21 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=37.8
Q ss_pred cCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 212 iG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..+.+.+.+.+.+...+.. ....+++|.||+|+||||+++++|+.++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~--------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED--------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT--------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc--------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 34556666666555443321 112469999999999999999999999888755
No 186
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.87 E-value=0.00083 Score=62.05 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
++..+.|.||+|+||||+++.++..+|..+ ++..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 346789999999999999999999997644 444443
No 187
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.87 E-value=0.0005 Score=64.47 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
..|+|.|+|||||||+++.+++.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999876654
No 188
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.86 E-value=0.00086 Score=60.58 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
++..+.|.|++|+||||+++.++..+ |.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34678899999999999999999988 88998887543
No 189
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.85 E-value=0.0006 Score=63.92 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..|+|.||||+||||+++.+++.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4579999999999999999999999975543
No 190
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.84 E-value=0.0012 Score=67.31 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=44.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec-cchhh---------hhccchHHHHHHHHHHHHhcCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFL 307 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~-s~l~~---------~~~g~~~~~l~~lf~~A~~~~p~VL~I 307 (489)
...+++.||+|+||||+.++++..+ +..++.+.- .++.. ...+.........+..+....|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 3568999999999999999998876 344443321 11110 001111112344667777789999999
Q ss_pred chhh
Q 011305 308 DEID 311 (489)
Q Consensus 308 DEiD 311 (489)
||.-
T Consensus 203 DEp~ 206 (356)
T 3jvv_A 203 GEMR 206 (356)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9993
No 191
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.82 E-value=0.004 Score=56.10 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.4
Q ss_pred CCceEEEEcCCCCcHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKA 261 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAra 261 (489)
++.-+.|.||+|+||||+++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456789999999999999994
No 192
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.80 E-value=0.0022 Score=61.09 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc-chh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s-~l~ 279 (489)
..++++||+|+|||.++.+++...+.+++.+... ++.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 3599999999999999999999887777666544 443
No 193
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.77 E-value=0.00092 Score=62.71 Aligned_cols=34 Identities=35% Similarity=0.578 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.++|.||||+||+|.|+.|++.++.+. ++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 478999999999999999999998765 5555554
No 194
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.77 E-value=0.0011 Score=61.14 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
.++..+.|.||+|+||||+++.++..+ |...+.++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345678999999999999999999988 554456665443
No 195
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.77 E-value=0.001 Score=60.99 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~ 274 (489)
+..|.|.|++|+||||+++.+++.+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4679999999999999999999998 57777665
No 196
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.75 E-value=0.00097 Score=63.68 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.+..+.|.||+|+||||+++.+++.+|...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3567999999999999999999999987544
No 197
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.74 E-value=0.00076 Score=61.00 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeccc
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK---TTFFNISASS 277 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s~ 277 (489)
.|+|.|+||+||||+++.+++.++ .++..++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 589999999999999999999885 3355555433
No 198
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.74 E-value=0.0017 Score=63.06 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=43.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccch--h-h--------hhccchHHHHHHHHHHHHhcCCcE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSV--V-S--------KWRGDSEKLIKVLFELARHHAPST 304 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l--~-~--------~~~g~~~~~l~~lf~~A~~~~p~V 304 (489)
.++..++|.||+|+||||++++++..+ ...++... ..+ . . ..+|.....++..+..+-...|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g-~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE-DPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC-CcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 345678999999999999999999865 23332221 111 0 0 000101112345566666678999
Q ss_pred EEEchhh
Q 011305 305 IFLDEID 311 (489)
Q Consensus 305 L~IDEiD 311 (489)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999993
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.73 E-value=0.0012 Score=59.84 Aligned_cols=31 Identities=26% Similarity=0.074 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
.+.|.|++||||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 88887664
No 200
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.70 E-value=0.0011 Score=61.79 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.++|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999877654
No 201
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.70 E-value=0.0012 Score=61.08 Aligned_cols=24 Identities=42% Similarity=0.696 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+.|+|.||+|+|||||++.+.++.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998876
No 202
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.68 E-value=0.0089 Score=62.55 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=30.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
++.++.-++|.|+||+|||+++..+|... |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 35666779999999999999999998854 557777764
No 203
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.67 E-value=0.0011 Score=60.53 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.+.|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987653
No 204
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.67 E-value=0.0014 Score=61.13 Aligned_cols=29 Identities=34% Similarity=0.474 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
..+.|.||+||||||+++.+++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46899999999999999999999997665
No 205
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.62 E-value=0.0016 Score=59.29 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
|.|.|++||||||+++.+++.+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88887654
No 206
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.62 E-value=0.0013 Score=61.89 Aligned_cols=29 Identities=31% Similarity=0.588 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.++|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 47899999999999999999999876543
No 207
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.62 E-value=0.00092 Score=66.66 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
++-++|.||+|+|||+|+..+|+.++..++..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 3568899999999999999999999988777665443
No 208
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.61 E-value=0.012 Score=61.40 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=30.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
++.++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35666779999999999999999998754 567777765
No 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.61 E-value=0.03 Score=64.30 Aligned_cols=44 Identities=27% Similarity=0.266 Sum_probs=35.5
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
.+|.+..++.|.+.+... ...+-+.|+|+.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 399999999998877431 12367899999999999999999863
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.51 E-value=0.0012 Score=60.74 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.+.|.|++||||||+++.+++ +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 588999999999999999999 88766654
No 211
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.48 E-value=0.0017 Score=59.60 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
+.-|+|.|+|||||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3568999999999999999999998763
No 212
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.48 E-value=0.0019 Score=59.21 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.+.|.|++||||||+++.+++.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999877654
No 213
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.47 E-value=0.0031 Score=60.04 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
..+++.|+||+|||+++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998876 666665554
No 214
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0022 Score=62.04 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..+.|.|++|+||||+++.+|..++.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 46799999999999999999999999887754
No 215
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.43 E-value=0.00085 Score=61.97 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
+..|+|.|++||||||+++.+++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4679999999999999999999987544
No 216
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.42 E-value=0.0024 Score=61.15 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..+.|.||+|+||||+++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3578999999999999999999999976643
No 217
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.40 E-value=0.0031 Score=60.48 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=31.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc--------EEEEeccchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTT--------FFNISASSVV 279 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~--------~i~v~~s~l~ 279 (489)
+..|.|.|++||||||+++.+++.++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3568999999999999999999999876 3466766654
No 218
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.40 E-value=0.0028 Score=57.54 Aligned_cols=37 Identities=24% Similarity=0.203 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
++..++|.|++|+||||+++.++..+ +.++..++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 45678999999999999999999987 44555665443
No 219
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.40 E-value=0.0024 Score=58.32 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.+..|.|.|++||||||+++.+++. |.+++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 3467899999999999999999998 776654
No 220
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.39 E-value=0.0029 Score=64.73 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=44.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEecc-chh-hh---hc-----cchHHHHHHHHHHHHhcCCcEE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS-SVV-SK---WR-----GDSEKLIKVLFELARHHAPSTI 305 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~s-~l~-~~---~~-----g~~~~~l~~lf~~A~~~~p~VL 305 (489)
.++..++|.||+|+||||++++++..+. ..++.+... ++. .. ++ |.....+...+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3456799999999999999999998652 344333211 110 00 01 0011122445556666789999
Q ss_pred EEchhh
Q 011305 306 FLDEID 311 (489)
Q Consensus 306 ~IDEiD 311 (489)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999993
No 221
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.38 E-value=0.002 Score=59.60 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..++..++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45567899999999999999999999884
No 222
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.38 E-value=0.024 Score=56.29 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=30.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
++.++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 35666779999999999999999998765 467777764
No 223
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.37 E-value=0.0011 Score=61.30 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+..|+|.|++||||||+++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999874
No 224
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.33 E-value=0.002 Score=59.63 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.+.|+|++||||||+++.+++.+|.+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 47899999999999999999998987764
No 225
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.32 E-value=0.0018 Score=65.24 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
++.++|.||+|||||+|+..||+.++.+++..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 3578999999999999999999999988776554
No 226
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.32 E-value=0.0022 Score=59.13 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
..+.|.||+||||||+++.++. +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3578999999999999999988 7877653
No 227
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.29 E-value=0.0033 Score=60.41 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
++..+.|.||+|+||||+++.+++.+|.+++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3456889999999999999999999998655
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.27 E-value=0.016 Score=57.16 Aligned_cols=61 Identities=25% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEecc
Q 011305 215 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 276 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s 276 (489)
+.+++.+.+.+...+..... .....++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~-~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADK-WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGG-SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCccc-ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 34555666555543322111 1112345679999999999999999999765 5566666653
No 229
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.26 E-value=0.026 Score=51.61 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+++++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999998887654
No 230
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.24 E-value=0.0038 Score=59.13 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=28.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
...+..+.|.|++|+||||+++.++..+|.+++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3455679999999999999999999999987653
No 231
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.22 E-value=0.0038 Score=58.10 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|.|.|++||||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 35689999999999999999998 88766543
No 232
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.22 E-value=0.015 Score=66.03 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~ 264 (489)
.++..++|.||.|+||||+.|.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3456789999999999999999875
No 233
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.19 E-value=0.0032 Score=58.52 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~s~l 278 (489)
++..++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 456789999999999999999999764 56777775443
No 234
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=96.14 E-value=0.00054 Score=55.16 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhhhhhhhhhcccc---CCCc--eeeeccCCCcccceeeEEEeccccchhhh----hhHHHHHHHHHHHHH
Q 011305 15 RALTKCLKEGIITSRFIISKFII---GPPH--AFFYSFGSPPFQFSLAIQLAGCCSVETER----ERFFFFLIFILSAIS 85 (489)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 85 (489)
..+..||+.+|.+++-+|.-|+. |.++ +-+|..|+.+...|++|.+.|-|..-++. +||..+|..+..||.
T Consensus 7 ~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~RL~ 86 (89)
T 3eab_A 7 ERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRLQ 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999 9898 66899999999999999999966554443 349999999999985
Q ss_pred H
Q 011305 86 L 86 (489)
Q Consensus 86 ~ 86 (489)
.
T Consensus 87 ~ 87 (89)
T 3eab_A 87 L 87 (89)
T ss_dssp H
T ss_pred h
Confidence 4
No 235
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.11 E-value=0.0026 Score=58.75 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=26.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC-KTTFF 271 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el-~~~~i 271 (489)
.++.-+.|.|++|+||||+++.++..+ +.+++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 444668899999999999999999987 55444
No 236
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.10 E-value=0.034 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCcHHHHHHH-HHHH
Q 011305 243 KGILLFGPPGTGKTMLAKA-VATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAra-lA~e 265 (489)
+++++.+|+|+|||..+-. +...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 6799999999999987433 3343
No 237
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.08 E-value=0.0029 Score=63.58 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccc-hh----hh---hccchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VV----SK---WRGDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~-l~----~~---~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
+..++|.||+|+||||++++++.... ...+.+.... +. .. +..+.....+..+..|....|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 46799999999999999999999773 2344454321 11 00 110011233445666667889999999985
Q ss_pred h
Q 011305 312 A 312 (489)
Q Consensus 312 ~ 312 (489)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
No 238
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.08 E-value=0.0045 Score=57.55 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
..+.|.|++|||||++++.+++.+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999999876543
No 239
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.07 E-value=0.0033 Score=57.57 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
++..+.|.||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999876
No 240
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.03 E-value=0.0073 Score=62.54 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.+.-|+|.|+||+||||+|+.+++.++..+ ++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 346688999999999999999999987654 444443
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.98 E-value=0.0043 Score=56.26 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+.-+.|.||+|+||||+++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999998763
No 242
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.98 E-value=0.0039 Score=57.98 Aligned_cols=27 Identities=33% Similarity=0.392 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999999874
No 243
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.96 E-value=0.057 Score=57.11 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3455678999999999999999999876
No 244
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.95 E-value=0.033 Score=55.81 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999999876
No 245
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.94 E-value=0.0043 Score=60.71 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCcEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC-KTTFF 271 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el-~~~~i 271 (489)
.-++|.|+||+||||+++.+++.+ +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 568999999999999999999974 54444
No 246
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.92 E-value=0.0049 Score=61.53 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=49.3
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCC-cHHHHHHHHHHHHhH
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGY-SGSDIRLVSKEAAMQ 426 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~-sg~Di~~l~~~A~~~ 426 (489)
+++|+-....+.|...+-.|++..+.-++.+ |-..++...-...+.-..+-+.++.....|- +-.+....++.+...
T Consensus 192 ~~~i~L~~~R~~L~~RI~~Rvd~Ml~~Gl~e--Ev~~L~~~~~~~~~a~~aIGYkE~~~yL~G~~sl~eaie~i~~~TR~ 269 (322)
T 3exa_A 192 LVMIGLTMERDVLYDRINRRVDQMVEEGLID--EAKKLYDRGIRDCQSVQAIGYKEMYDYLDGNVTLEEAIDTLKRNSRR 269 (322)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHHHHHTHHH--HHHHHHHTTCCSSTGGGSTTTHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHHHHCCHHH--HHHHHHhcCCCcCccceeeeHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 4445544444567778878888777666543 3444555431111122345566677666653 445555555555555
Q ss_pred HHHHHHHHhhhh
Q 011305 427 PLRRLMVLLEGR 438 (489)
Q Consensus 427 a~rR~~~~le~~ 438 (489)
-++|-++.....
T Consensus 270 yAKRQ~TWfR~~ 281 (322)
T 3exa_A 270 YAKRQLTWFRNK 281 (322)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHhcCC
Confidence 566656666544
No 247
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.92 E-value=0.0055 Score=55.62 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
..++|.||+|+||||+++.++...+.. +.++..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNS-AYIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSE-EEEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCe-EEEcccc
Confidence 357899999999999999999866542 3444433
No 248
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.90 E-value=0.018 Score=53.49 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=42.1
Q ss_pred CceEEEEcCCCCcHH-HHHHHHHHHh--CCcEEEEeccchhhhhccchHH------------HHHHHHHHHHhcCCcEEE
Q 011305 242 WKGILLFGPPGTGKT-MLAKAVATEC--KTTFFNISASSVVSKWRGDSEK------------LIKVLFELARHHAPSTIF 306 (489)
Q Consensus 242 ~~~vLL~GppGtGKT-~lAralA~el--~~~~i~v~~s~l~~~~~g~~~~------------~l~~lf~~A~~~~p~VL~ 306 (489)
.+-.+++||.|+||| .|.+++.+.. +..++.++.. +-..+...... ....++...+ ...+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEE
Confidence 355788999999999 8999987754 6777777643 11111100000 0112233222 347999
Q ss_pred EchhhhH
Q 011305 307 LDEIDAI 313 (489)
Q Consensus 307 IDEiD~l 313 (489)
|||+.-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999877
No 249
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.89 E-value=0.066 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=17.9
Q ss_pred CceEEEEcCCCCcHHHHH-HHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLA-KAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA-ralA~e 265 (489)
.+++++.+|+|+|||..+ -.+...
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHH
Confidence 367999999999999873 333433
No 250
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.88 E-value=0.044 Score=57.87 Aligned_cols=38 Identities=8% Similarity=-0.113 Sum_probs=31.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
++.++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 35666779999999999999999998865 457777765
No 251
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.87 E-value=0.028 Score=63.98 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
+.-++|.||.|+||||+.|.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999954
No 252
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.87 E-value=0.041 Score=54.96 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=29.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
..++..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456779999999999999999999866 566666654
No 253
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.86 E-value=0.0061 Score=59.65 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..|.|.|++||||||+++.++ .+|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 3568999999999999999999 67876544
No 254
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.85 E-value=0.0055 Score=56.05 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
++.-+.|.||+|+||||+++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999999863
No 255
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.85 E-value=0.0046 Score=62.42 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=48.8
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC-CcHHHHHHHHHHHHhH
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG-YSGSDIRLVSKEAAMQ 426 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G-~sg~Di~~l~~~A~~~ 426 (489)
+++|+-.-..+.|...+-.|++..+.-++.+ |-..++...+...+.-..+-+.++.....| .+-.+....++.+...
T Consensus 198 ~~~~~L~~~r~~L~~RI~~Rvd~M~~~Gl~~--Ev~~L~~~~~~~~~~~~aIGyke~~~yl~g~~~~~ea~~~~~~~Tr~ 275 (340)
T 3d3q_A 198 TLLIGIEMSRETLYLRINKRVDIMLGHGLFN--EVQHLVEQGFEASQSMQAIGYKELVPVIKGNISMENAVEKLKQHSRQ 275 (340)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHHHHHTHHH--HHHHHHHTTCTTSSGGGSTTTTTHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHcCCCcchhhhhccHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4455555455667788888888777766543 344455443212222233445555555554 3555555555555555
Q ss_pred HHHHHHHHhhhh
Q 011305 427 PLRRLMVLLEGR 438 (489)
Q Consensus 427 a~rR~~~~le~~ 438 (489)
-++|-+......
T Consensus 276 yAKRQ~TWfr~~ 287 (340)
T 3d3q_A 276 YAKRQLTWFKNK 287 (340)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhCCC
Confidence 566656665544
No 256
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.84 E-value=0.025 Score=58.65 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=40.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEecc-chhhh------hccchHHHHHHHHHHHHhcCCcEEEEchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNISAS-SVVSK------WRGDSEKLIKVLFELARHHAPSTIFLDEI 310 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s-~l~~~------~~g~~~~~l~~lf~~A~~~~p~VL~IDEi 310 (489)
...++|.||+|+||||+.++++..+. ..++.+.-. ++.-. ............+..+....|.++++.|+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 34689999999999999999999874 334433211 11000 00001011223344445567899999885
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.84 E-value=0.018 Score=52.96 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
++.-+.|.|++|+||||+++.++..+ +.+++.++..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 34568899999999999999999876 6666665443
No 258
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.81 E-value=0.1 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+.+++.+|+|+|||..+-..+-+.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 679999999999998776655544
No 259
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.80 E-value=0.045 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
+..+++.||+|||||++...+.-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 36799999999999987766543
No 260
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.80 E-value=0.02 Score=61.15 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
+.-|+|.|.||+||||+++.+++.+ +.+...++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 3568999999999999999999988 455555665544
No 261
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.80 E-value=0.049 Score=56.89 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=31.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
++.++.-++|.|+||+|||+++..+|... |.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 35666779999999999999999998765 677877765
No 262
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.72 E-value=0.0049 Score=57.57 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
.+++++|.||+|+|||++|..+++... +++..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 347899999999999999999999876 6555443
No 263
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.72 E-value=0.0066 Score=56.43 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
..|.|.|++|||||++++.+|+.+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999884
No 264
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.70 E-value=0.0065 Score=56.06 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
++..+.|.||+|+||||+++.++..++..+..++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~ 39 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPM 39 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34568899999999999999999988722333443
No 265
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.70 E-value=0.055 Score=53.38 Aligned_cols=71 Identities=23% Similarity=0.083 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------hh------------c-cchHHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KW------------R-GDSEKLIKVLFELAR 298 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~~------------~-g~~~~~l~~lf~~A~ 298 (489)
+..+++.|++|+||||++..+|..+ +..+..+++.-... .+ . ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999999876 66666666531100 00 0 122333445666665
Q ss_pred hcCCcEEEEchhhh
Q 011305 299 HHAPSTIFLDEIDA 312 (489)
Q Consensus 299 ~~~p~VL~IDEiD~ 312 (489)
.....+++||=.-.
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 45668999997533
No 266
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.68 E-value=0.043 Score=58.23 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
++..|+|.|++|+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45679999999999999999999766 666666665
No 267
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.66 E-value=0.0058 Score=56.41 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+++.+.|.||+|+||||+++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 446799999999999999999998763
No 268
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.64 E-value=0.083 Score=54.95 Aligned_cols=36 Identities=33% Similarity=0.252 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
++..+++.|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34679999999999999999999876 4666666654
No 269
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.62 E-value=0.0069 Score=56.13 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.++..+.|.||+|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456788999999999999999999874
No 270
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.60 E-value=0.0073 Score=62.28 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.+-++|.||+|+|||+++..+|+.++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 356889999999999999999999987766543
No 271
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.58 E-value=0.018 Score=53.19 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
.+-.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567899999999999998888876 66665553
No 272
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.53 E-value=0.044 Score=58.31 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=50.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----------------------h----c--cchH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------------W----R--GDSE 287 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~----------------------~----~--g~~~ 287 (489)
..++..++|.||+|+|||+|++.++... |.+.+++...+-... + . -...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 4556779999999999999999999765 445555543221100 0 0 0123
Q ss_pred HHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 288 KLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 288 ~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
...+.++..+....|.+|+||=+..+..
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld~ 385 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALAR 385 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHHh
Confidence 4455566677778899999996555543
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.49 E-value=0.0076 Score=54.81 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+.+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998763
No 274
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.44 E-value=0.0082 Score=63.98 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=44.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccc-hhhh---h--------ccchHHHHHHHHHHHHhcCCcEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVSK---W--------RGDSEKLIKVLFELARHHAPSTIF 306 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~-l~~~---~--------~g~~~~~l~~lf~~A~~~~p~VL~ 306 (489)
.+.+++|.||+|+||||++++++..+. ...+.+.... +... + .+.....+..+...+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 346799999999999999999998773 3455554322 2100 0 001111233344555567899999
Q ss_pred Echh
Q 011305 307 LDEI 310 (489)
Q Consensus 307 IDEi 310 (489)
+.|+
T Consensus 339 vgEi 342 (511)
T 2oap_1 339 VGEV 342 (511)
T ss_dssp ESCC
T ss_pred eCCc
Confidence 9987
No 275
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.41 E-value=0.088 Score=51.79 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------h---------h---c-cchHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------K---------W---R-GDSEKLIKVLFELA 297 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~---------~---~-g~~~~~l~~lf~~A 297 (489)
++..+.+.|++|+||||++..+|..+ +..+..+++.-... . + . .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999866 55665555421000 0 0 0 01223334556666
Q ss_pred HhcCCcEEEEchhhh
Q 011305 298 RHHAPSTIFLDEIDA 312 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~ 312 (489)
....+.+|+||+.-.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 556679999999833
No 276
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.34 E-value=0.049 Score=60.85 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...+++.||+|+|||+++..+...
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999987777554
No 277
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.33 E-value=0.076 Score=57.96 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+..++.+..++.. ..-.|++||||||||+++-.+..++ +.+++.+..+
T Consensus 191 N~~Q~~AV~~al~~--------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CHHHHHHHHHHHHC--------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHHHHHhcC--------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 45666666665532 1247999999999998766555544 5555555543
No 278
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.27 E-value=0.014 Score=63.65 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
.+..|+|.|.||+||||+++++++.+ |.+++.++...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 34669999999999999999999999 99999887543
No 279
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.24 E-value=0.067 Score=48.66 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.7
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAr 260 (489)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 689999999999997654
No 280
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.24 E-value=0.049 Score=57.98 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHH--HHHh--CCcEEEEecc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAV--ATEC--KTTFFNISAS 276 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAral--A~el--~~~~i~v~~s 276 (489)
.++..++|.||+|+|||||++.+ +... +..-++++..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 45678999999999999999994 4433 3445556543
No 281
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.24 E-value=0.01 Score=54.38 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
+|++|++|||||++|+.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888887654
No 282
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.22 E-value=0.023 Score=56.24 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHccccCch---hhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 215 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~---~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.+++.+.+.+...+.... ...--..++..+.|.||+|+||||+++.+|..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566666665554442221 111013455678999999999999999999876
No 283
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.21 E-value=0.012 Score=54.81 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+++-+.|.||+|+|||||++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346688999999999999999998764
No 284
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.17 E-value=0.015 Score=55.10 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFN 272 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~--~~~i~ 272 (489)
.+.-+.|.||+|+||||+++.+++.++ .+++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 446688999999999999999999986 45543
No 285
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.14 E-value=0.11 Score=53.88 Aligned_cols=70 Identities=23% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------hh---------c----cchHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KW---------R----GDSEKLIKVLFELA 297 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~~---------~----g~~~~~l~~lf~~A 297 (489)
++..+++.|++|+||||++..+|..+ +..+..+++.-... .+ . ..........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 55678899999999999999999876 55666665421110 00 0 01123335556666
Q ss_pred HhcCCcEEEEchh
Q 011305 298 RHHAPSTIFLDEI 310 (489)
Q Consensus 298 ~~~~p~VL~IDEi 310 (489)
+.....+++||=.
T Consensus 177 ~~~~~DvVIIDTa 189 (425)
T 2ffh_A 177 RLEARDLILVDTA 189 (425)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHCCCCEEEEcCC
Confidence 5455679999854
No 286
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.14 E-value=0.0058 Score=56.33 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~ 267 (489)
-|.|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 287
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.14 E-value=0.012 Score=55.16 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+||||+++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455678999999999999999999976
No 288
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.13 E-value=0.013 Score=54.15 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.++.-+.|.||+|+||||+++.++..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4456788999999999999999999874
No 289
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.12 E-value=0.072 Score=59.73 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~e 265 (489)
++..++|.||.|+||||+.|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4456899999999999999999874
No 290
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.11 E-value=0.015 Score=51.96 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++..+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445678899999999999999999987
No 291
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.07 E-value=0.06 Score=56.04 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=47.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhhh----------------c----cchHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKW----------------R----GDSEKLIKVLFE 295 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~~----------------~----g~~~~~l~~lf~ 295 (489)
.+++.+++.|++|+||||++-.+|..+ |..+..+++.-..... . ......+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345788999999999999999998765 6777777765321100 0 012333355566
Q ss_pred HHHhcCCcEEEEchh
Q 011305 296 LARHHAPSTIFLDEI 310 (489)
Q Consensus 296 ~A~~~~p~VL~IDEi 310 (489)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 665455689999875
No 292
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.04 E-value=0.014 Score=54.99 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+++.-+.|.||+|+|||||++.++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34556789999999999999999999764
No 293
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.97 E-value=0.016 Score=54.97 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
..|.|.|++|||||++++.+|+.+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 467899999999999999999999999864
No 294
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.96 E-value=0.012 Score=57.84 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 278 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s~l 278 (489)
.-|.|.||+|+||||+++.+++.++ ..+..+++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4588999999999999999999875 44556666554
No 295
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.96 E-value=0.017 Score=55.08 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.+-|.||||+||||+++.+++.++.+.+ +..++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdll 43 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDML 43 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHH
Confidence 4678999999999999999999998765 444443
No 296
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.90 E-value=0.025 Score=55.19 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
+.++.-++|.||||+|||++++.++..+ |.+++.++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4556779999999999999999998865 446665543
No 297
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.86 E-value=0.018 Score=54.76 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
.++.-+-|.||+|+||||+++.++..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344568899999999999999999988754
No 298
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.85 E-value=0.033 Score=56.57 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHccccCch---hhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 215 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~---~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.+++.+.+.+...+.... ...--..++..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4566666665554443221 111013456778999999999999999999976
No 299
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.85 E-value=0.0032 Score=65.88 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCccCCCcEEEEEE-eCCCCcccHHHHh--hcccccccCCCCHH-HHHHHH
Q 011305 326 ASRRLKTELLIQMDGLTQSDELVFVLAA-TNLPWELDAAMLR--RLEKRILVPLPDTE-ARRAMF 386 (489)
Q Consensus 326 ~~~~i~~~LL~~ldg~~~~~~~viVIat-Tn~p~~Ld~al~r--Rf~~~i~~~~Pd~~-eR~~IL 386 (489)
..+++++.|+..||++..... + +++ ||+|+.+|+++++ ||++.|++++|+.. .|.+|+
T Consensus 127 ~e~rvl~~LL~~~dg~~~~~~-v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 127 AEERILDALLPPAKNQWGEVE-N--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccccccc-c--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 346788899999998865433 2 455 9999999999998 99999999999987 677775
No 300
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.84 E-value=0.14 Score=48.06 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCcHHHHH
Q 011305 243 KGILLFGPPGTGKTMLA 259 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lA 259 (489)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 67999999999999864
No 301
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.80 E-value=0.048 Score=51.29 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
.-.+++||.|+|||+.+-.++..+ +..++.+..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 445689999999999998887765 666666653
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.75 E-value=0.019 Score=57.04 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=27.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
.+++..+.|.||+|+|||||++.|+..+...+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 46667899999999999999999999874444
No 303
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.67 E-value=0.072 Score=55.81 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~ 274 (489)
+..|+|.|.||+||||+++.+++.++ .+...++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 45799999999999999999999874 4444544
No 304
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.66 E-value=0.18 Score=46.91 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.7
Q ss_pred CceEEEEcCCCCcHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA 259 (489)
++++++.+|+|+|||..+
T Consensus 61 ~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 468999999999999874
No 305
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.63 E-value=0.1 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+++++.+|+|+|||..+-..+.+.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 689999999999999876655443
No 306
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.57 E-value=0.15 Score=47.65 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=30.4
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcc----cCCCCceEEEEcCCCCcHHHHHH
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTG----LLSPWKGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~----~~~~~~~vLL~GppGtGKT~lAr 260 (489)
.+|+++.-.+.+.+.|.+.- ...+..... .....+.+++.+|+|+|||..+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 45777766666666665421 111111111 11234689999999999998643
No 307
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.54 E-value=0.022 Score=61.56 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS 277 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~s~ 277 (489)
.+..|+|.|++|+||||+|+++++.++ .+++.++...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345689999999999999999999986 7788887544
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.42 E-value=0.016 Score=54.53 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=17.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHH-HHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVA-TEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA-~el 266 (489)
.++.-+.|.||+|+||||+++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345668899999999999999999 765
No 309
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.37 E-value=0.086 Score=52.64 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+.-+-|.||+|+||||+++.++..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45688999999999999999999875
No 310
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.37 E-value=0.048 Score=53.60 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+.-|.|.||+|+||||+++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345688999999999999999999875
No 311
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.33 E-value=0.49 Score=47.05 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=18.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
.+++++.+|+|+|||..+-..+-.
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999876554443
No 312
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.31 E-value=0.095 Score=52.79 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
...|.|.|+||+||||++..++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3578999999999999999999876 55544443
No 313
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.24 E-value=0.033 Score=52.63 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+.-+.|.|++|+||||+++.+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999999984
No 314
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.23 E-value=0.13 Score=55.54 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+++..+.|.||+|+||||+++.++...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4666789999999999999999999865
No 315
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.21 E-value=0.051 Score=49.22 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
..+.|.|++|+||||++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468899999999999999999876 45555554
No 316
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.20 E-value=0.15 Score=47.99 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.2
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKA 261 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAra 261 (489)
+.+++.+|+|+|||...-.
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 6899999999999987543
No 317
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.19 E-value=0.027 Score=51.43 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
.+.++||.|++|+|||++|.++.+. |..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 3579999999999999999999874 4443
No 318
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.17 E-value=0.028 Score=51.70 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999876
No 319
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.14 E-value=0.034 Score=59.76 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~s~l 278 (489)
++..+.|.|++|+||||++++|+..++ ..+..++...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 446789999999999999999999884 34555666544
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.14 E-value=0.032 Score=55.48 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||+|+||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445668899999999999999999977
No 321
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.12 E-value=0.3 Score=51.04 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--------~~~~i~v~~ 275 (489)
+++++.+|+|+|||..+-..+.+. +..++.+.+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 60 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFAN 60 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 679999999999999877666544 455555544
No 322
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.12 E-value=0.051 Score=53.66 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+.-+-|.||+|+||||+++.++..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999775
No 323
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.07 E-value=0.015 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+.-|.|.|++|+||||+++.+++.++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346789999999999999999999983
No 324
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.96 E-value=0.11 Score=61.47 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+++..+.|.||+|+||||+++.+...+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 3566779999999999999999999876
No 325
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.95 E-value=0.057 Score=50.58 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v 273 (489)
+.-|.|.|++|+||||+++.+++.+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3568899999999999999999988 4555544
No 326
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.93 E-value=0.16 Score=50.97 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..+..+.|.||||+||||+.+.++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344668899999999999999999765
No 327
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.88 E-value=0.29 Score=45.24 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.4
Q ss_pred CceEEEEcCCCCcHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKA 261 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAra 261 (489)
.+.+++.+|+|+|||..+-.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 36799999999999986543
No 328
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=93.84 E-value=0.23 Score=57.20 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
+..++|+||.|+||||+.|.++-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 46789999999999999999943
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.80 E-value=0.038 Score=54.72 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35678899999999999999999876
No 330
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.74 E-value=0.071 Score=47.74 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
....+++.|++|+|||+++..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
No 331
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.74 E-value=0.03 Score=53.31 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||.+.++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566778999999999999999999765
No 332
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.73 E-value=0.19 Score=56.02 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
+..++|.||.|+||||+.|.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456889999999999999999864
No 333
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.71 E-value=0.16 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=17.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVA 263 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA 263 (489)
++++++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4789999999999998765443
No 334
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.69 E-value=0.14 Score=52.55 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++..++|.||+|+|||++++.+++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345679999999999999999999865
No 335
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.62 E-value=0.032 Score=53.14 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566779999999999999999999865
No 336
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.57 E-value=0.074 Score=50.04 Aligned_cols=30 Identities=27% Similarity=0.166 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
+.-|.|.|++|+||||+++.+++.++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 467889999999999999999999986443
No 337
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.48 E-value=0.066 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.135 Sum_probs=20.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+.-|.|.|++|+||||+++.+++.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999987
No 338
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.45 E-value=0.043 Score=49.11 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~ 267 (489)
-.+|+||.|+|||+++++|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998775
No 339
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.44 E-value=0.16 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
+++++.+|+|+|||..+-..+-
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 5799999999999987654443
No 340
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.41 E-value=0.067 Score=58.19 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..++++||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999888776654
No 341
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.38 E-value=0.044 Score=57.56 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
+..++|+||+|+|||+|+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3568999999999999999988764
No 342
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.37 E-value=0.055 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-+.|.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 568899999999999999999875
No 343
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.32 E-value=0.037 Score=52.16 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455678899999999999999999765
No 344
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.30 E-value=0.067 Score=55.52 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc-chh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s-~l~ 279 (489)
..+++.+|+|+|||.++-.++...+.+.+.+-.. ++.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~ 146 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHH
Confidence 4599999999999999998888888777766554 443
No 345
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.28 E-value=0.086 Score=53.05 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=30.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
+.++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4566779999999999999999998864 677777765
No 346
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.28 E-value=0.038 Score=52.71 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999999865
No 347
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.16 E-value=0.045 Score=58.18 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~ 268 (489)
+..|+|.|.+||||||+++++|+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999974
No 348
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.16 E-value=0.041 Score=53.23 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||++.++...
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556678899999999999999999865
No 349
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.13 E-value=0.25 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=18.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
.+++++.+|+|+|||..+-..+-
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHHH
Confidence 36799999999999977654443
No 350
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.12 E-value=0.17 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
+++++.+|+|+|||..+-..+..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~~ 59 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTALW 59 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999955444333
No 351
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.04 E-value=0.058 Score=50.58 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
-.|-|+|..||||||+++.+++ +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4588999999999999999988 888876443
No 352
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.04 E-value=0.059 Score=51.41 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.-|.|.|++|+||||+++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999987
No 353
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.04 E-value=0.044 Score=52.93 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566779999999999999999999765
No 354
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.03 E-value=0.27 Score=49.18 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
....+.|.|+||+||||++..++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999998765
No 355
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.03 E-value=0.052 Score=52.65 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
..++..+.|.||.|+|||||++.++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455667899999999999999999975
No 356
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.01 E-value=0.039 Score=55.94 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEecc-chhhh-------hcc-c-------hHHHHHHHHHHHHhcC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-SVVSK-------WRG-D-------SEKLIKVLFELARHHA 301 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s-~l~~~-------~~g-~-------~~~~l~~lf~~A~~~~ 301 (489)
.++..++|.||+|+||||++++++.... ...+.+... ++... ++- + ....++..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 3456899999999999999999999763 234444421 11100 111 0 1112345555666677
Q ss_pred CcEEEEchhh
Q 011305 302 PSTIFLDEID 311 (489)
Q Consensus 302 p~VL~IDEiD 311 (489)
|.+++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 8899999984
No 357
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.01 E-value=0.048 Score=50.89 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
+..+.|.||.|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999975
No 358
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.00 E-value=0.051 Score=51.90 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..+ ..+.|.||.|+|||||.+.++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 455 678899999999999999999865
No 359
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.97 E-value=0.19 Score=55.30 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHHh---CCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAK-AVATEC---KTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAr-alA~el---~~~~i~v~ 274 (489)
..++++.||+|+|||+.+. .+.+.+ +...+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 5789999999999999883 333222 45555554
No 360
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.92 E-value=0.047 Score=53.11 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++..+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999999865
No 361
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.91 E-value=0.51 Score=45.04 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKA 261 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAra 261 (489)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 6799999999999987543
No 362
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.88 E-value=0.059 Score=51.65 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
..++..+.|.||.|+|||||++.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345567889999999999999999975
No 363
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.84 E-value=0.042 Score=51.99 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++..+
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678999999999999999999865
No 364
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.84 E-value=0.54 Score=49.19 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--------~~~~i~v~~ 275 (489)
+++++.+|+|+|||..+-..+.+. +...+.+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 579999999999999876666544 455555544
No 365
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.83 E-value=0.042 Score=52.95 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
No 366
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.83 E-value=0.049 Score=52.81 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||++.++..+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4556678999999999999999999865
No 367
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.80 E-value=0.043 Score=52.63 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++...
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455678999999999999999999865
No 368
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.78 E-value=0.05 Score=51.08 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||.|+|||||.+.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678899999999999999998765
No 369
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.75 E-value=0.067 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+++.|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 370
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.75 E-value=0.039 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..+.|.|++|+||||+++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999999773
No 371
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.73 E-value=0.052 Score=52.61 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4556678899999999999999999855
No 372
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.72 E-value=0.044 Score=52.20 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
No 373
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.72 E-value=0.075 Score=48.72 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
...++|.|++|+|||+++..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999864
No 374
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.72 E-value=0.056 Score=54.87 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|||||||.+.|+...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3555678899999999999999999865
No 375
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.71 E-value=0.052 Score=52.38 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556678999999999999999999865
No 376
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.70 E-value=0.12 Score=49.65 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 377
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.66 E-value=0.062 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
++.|.||+|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999865
No 378
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.66 E-value=0.091 Score=48.32 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..++|.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998863
No 379
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.64 E-value=0.063 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999985
No 380
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.64 E-value=0.081 Score=50.03 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~ 268 (489)
+.-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456888999999999999999997754
No 381
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.63 E-value=0.046 Score=53.41 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||.|+|||||++.++...
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455678999999999999999999865
No 382
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.62 E-value=0.066 Score=54.09 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
...+.|.||+|+|||||++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999987643
No 383
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.59 E-value=0.061 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 384
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.51 E-value=0.2 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=17.8
Q ss_pred CceEEEEcCCCCcHHHHH-HHHH
Q 011305 242 WKGILLFGPPGTGKTMLA-KAVA 263 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA-ralA 263 (489)
.+.+|+.||+|+|||..+ -++.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999986 4444
No 385
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.49 E-value=0.087 Score=56.49 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
+..++|.|++|+||||+++.+++.+ |.++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 3568999999999999999999987 456666665443
No 386
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.48 E-value=0.06 Score=52.21 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++...
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3455678999999999999999999865
No 387
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.47 E-value=0.061 Score=51.67 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..++..+.|.||.|+|||||.+.++..+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34556789999999999999999998653
No 388
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=92.46 E-value=0.74 Score=44.96 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=30.4
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhc-----ccC-CCCceEEEEcCCCCcHHHHH
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFT-----GLL-SPWKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~-----~~~-~~~~~vLL~GppGtGKT~lA 259 (489)
.+|+++.-...+.+.|... ....|.... ... .+++++++.+|+|||||...
T Consensus 92 ~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 4677776666666666542 111121111 112 23578999999999999764
No 389
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.45 E-value=0.048 Score=56.85 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~e 265 (489)
..+-.++.|+||||||+++..++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3356789999999999999888753
No 390
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.41 E-value=0.069 Score=54.22 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|+|||||.+.++.-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3455678899999999999999999865
No 391
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.40 E-value=0.42 Score=48.12 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=15.5
Q ss_pred CceEEEEcCCCCcHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA 259 (489)
.+.+++.+|+|+|||..+
T Consensus 52 ~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEcCCCCHHHHHH
Confidence 468999999999999743
No 392
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.39 E-value=0.069 Score=54.29 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|+|||||.+.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3455678899999999999999999865
No 393
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.39 E-value=0.28 Score=49.30 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=16.9
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAV 262 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAral 262 (489)
.+.+++.+|+|+|||+.+-..
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHH
Confidence 357999999999999875433
No 394
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.29 E-value=0.071 Score=54.52 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|||||||.+.|+...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3455678899999999999999999865
No 395
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.29 E-value=0.053 Score=52.18 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
No 396
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.29 E-value=0.072 Score=54.35 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|+|||||.+.++.-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3555678899999999999999999855
No 397
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.27 E-value=0.083 Score=45.69 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.+++.|++|+|||+++..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 398
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=92.27 E-value=0.34 Score=50.29 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=16.1
Q ss_pred CceEEEEcCCCCcHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA 259 (489)
++.+|+.||+|+|||..+
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 478999999999999874
No 399
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.27 E-value=0.12 Score=58.02 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..++++||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357999999999999888777654
No 400
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.27 E-value=0.13 Score=50.90 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-++|.|+.|+||||+++.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999764
No 401
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.25 E-value=0.054 Score=52.93 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++..+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455678899999999999999999865
No 402
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.25 E-value=0.07 Score=57.92 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++++|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999999988877654
No 403
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.18 E-value=0.091 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-|.|.|++|+||||+++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999987
No 404
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.15 E-value=0.08 Score=53.65 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||+|+|||||.+.++...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455678899999999999999999865
No 405
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.14 E-value=0.083 Score=45.31 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..+++.|++|+|||+++..+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
No 406
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.12 E-value=0.089 Score=45.28 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 407
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.12 E-value=0.061 Score=54.38 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|+|||||.+.++.-.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3455678899999999999999999865
No 408
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.09 E-value=0.084 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999874
No 409
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.09 E-value=0.38 Score=48.23 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.5
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAr 260 (489)
++.+++.+|+|+|||..+-
T Consensus 64 ~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCchHHHHHH
Confidence 4789999999999998753
No 410
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=92.06 E-value=0.59 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
+++++.+|+|+|||..+-..+.+
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 68999999999999988776653
No 411
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.04 E-value=0.19 Score=46.30 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
...++|.|++|+|||+++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 412
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.94 E-value=0.088 Score=49.41 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=25.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.++.-+.|.|+.|+||||+++.++.. +..+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 34456889999999999999999987 4444433
No 413
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.93 E-value=0.096 Score=45.28 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
-.|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998643
No 414
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.87 E-value=0.15 Score=51.88 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
...++++.||+|+|||++++.++..+ +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34689999999999999999998765 566666654
No 415
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.86 E-value=0.12 Score=44.94 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~e 265 (489)
....|++.|++|+|||+|+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999763
No 416
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.85 E-value=0.09 Score=53.61 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||+|+|||||.+.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 455678899999999999999999865
No 417
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=91.84 E-value=0.89 Score=42.68 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.5
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAr 260 (489)
+++++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
No 418
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.84 E-value=0.3 Score=57.73 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+++..+-|.||+|+||||+++.+.+-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4666779999999999999999998865
No 419
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=91.83 E-value=0.43 Score=47.48 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.6
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAr 260 (489)
+.+++.+|+|+|||..+-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 679999999999998743
No 420
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.79 E-value=0.1 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
-.|++.|++|+|||++++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
No 421
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.76 E-value=0.13 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~ 264 (489)
....|++.|++|+|||+++..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446799999999999999999976
No 422
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.70 E-value=0.093 Score=46.02 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+.|.|++|+|||+|.+.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 423
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.69 E-value=0.076 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 424
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.68 E-value=0.1 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 425
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.67 E-value=0.088 Score=54.03 Aligned_cols=28 Identities=32% Similarity=0.454 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+||||||+.+.|+...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4566779999999999999999999743
No 426
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.65 E-value=0.078 Score=52.13 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566778999999999999999999865
No 427
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.60 E-value=0.11 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 428
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.58 E-value=0.11 Score=45.58 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+..+....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 579999999999999999998743
No 429
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.56 E-value=0.11 Score=45.12 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 430
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.54 E-value=0.098 Score=45.64 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999753
No 431
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.52 E-value=0.063 Score=54.37 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|+|||||.+.++...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455678899999999999999999855
No 432
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.44 E-value=0.12 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 433
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.41 E-value=0.086 Score=51.04 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.. +..+.|.||.|+|||||.+.++...
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 5678999999999999999999865
No 434
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.38 E-value=0.12 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+++.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 435
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=91.38 E-value=0.29 Score=49.62 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
++++.+|+|+|||..+-.++... +.+++.+-.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999998887665 556665554
No 436
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.31 E-value=0.19 Score=46.33 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
|.|.|+.|+||||.++.+++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999987 66666554
No 437
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.29 E-value=0.12 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
No 438
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.27 E-value=0.073 Score=52.79 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4666789999999999999999999865
No 439
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.23 E-value=0.12 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 440
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.23 E-value=0.13 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.+++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 441
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.22 E-value=0.12 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...+.|.|++|+|||+|...++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999864
No 442
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.18 E-value=0.11 Score=45.02 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999963
No 443
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.14 E-value=0.25 Score=46.70 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--CCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el--~~~~i~v~~ 275 (489)
...+++.|.+|+||||++..++..+ +..+..++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3568899999999999999999776 556666653
No 444
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.12 E-value=0.19 Score=46.58 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--CCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--~~~~i~v 273 (489)
+-|.|.|+.|+||||+++.+++.+ +.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 347889999999999999999988 4555544
No 445
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.10 E-value=0.17 Score=56.70 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+++.||||||||+++..+...
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999987766553
No 446
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.08 E-value=0.83 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=18.5
Q ss_pred CceEEEEcCCCCcHHHHHHH-HHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKA-VATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAra-lA~e 265 (489)
.+++++.+|+|+|||..+-. +...
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~ 182 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSR 182 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHHHHHHH
Confidence 47899999999999987443 4443
No 447
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=91.08 E-value=0.25 Score=47.28 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
+.|.|.|+||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999764
No 448
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.05 E-value=0.15 Score=50.62 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.+.+++|.|++|+|||++|.++... |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 4578999999999999999999875 44443
No 449
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.04 E-value=0.12 Score=45.97 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..++|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999873
No 450
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.04 E-value=0.13 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+++..+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 451
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.04 E-value=0.12 Score=54.19 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||.|+|||||+|.++...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 345679999999999999999999865
No 452
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.02 E-value=1.2 Score=45.76 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.6
Q ss_pred CceEEEEcCCCCcHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA 259 (489)
.+.+++.+|+|+|||...
T Consensus 93 g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCchHHH
Confidence 478999999999999843
No 453
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.02 E-value=0.14 Score=44.91 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-.+|+||.|+|||++..|+.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998765
No 454
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.95 E-value=0.13 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 455
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.87 E-value=0.13 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999875
No 456
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.87 E-value=0.16 Score=45.24 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|++.|++|+|||+|+.++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999875
No 457
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.87 E-value=0.13 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56999999999999999999874
No 458
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.85 E-value=0.14 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
-.|++.|++|+|||+|+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998743
No 459
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.84 E-value=0.23 Score=46.23 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc-EEEEeccch
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT-FFNISASSV 278 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~-~i~v~~s~l 278 (489)
.|..-|+|+|.|||||+++|+.+.+.++.. +..++.++.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~ 48 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGP 48 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHH
Confidence 455778999999999999999998877532 444555553
No 460
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.78 E-value=0.14 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+..++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 461
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.77 E-value=0.13 Score=45.12 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|++.|++|+|||+|+..+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
No 462
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.76 E-value=0.14 Score=44.27 Aligned_cols=22 Identities=41% Similarity=0.748 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
-.+++.|++|+|||+|++.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3689999999999999999864
No 463
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=90.73 E-value=1.2 Score=47.16 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=16.2
Q ss_pred CCceEEEEcCCCCcHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lA 259 (489)
..+.+++.+|+|+|||..+
T Consensus 110 ~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCccHHH
Confidence 3578999999999999853
No 464
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.73 E-value=0.13 Score=52.25 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+-|.||+|+|||||++.++...
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4556678999999999999999999855
No 465
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.72 E-value=0.13 Score=45.78 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 466
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.70 E-value=0.084 Score=48.00 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
.++..+.|.|++|+|||+|.++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44467999999999999999998753
No 467
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.68 E-value=0.15 Score=44.77 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 468
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.67 E-value=0.15 Score=45.62 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|+|.|++|+|||+|+..+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 469
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.66 E-value=0.15 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...|++.|++|+|||+++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999753
No 470
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.55 E-value=0.15 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 471
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.54 E-value=0.14 Score=44.80 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
..|++.|++|+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999965
No 472
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.46 E-value=0.22 Score=51.82 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
.++.-+.|.||+|+|||||++.++......
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 345678999999999999999999988543
No 473
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.45 E-value=0.15 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 469999999999999999888754
No 474
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.44 E-value=0.16 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+..+...-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 579999999999999999998643
No 475
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.40 E-value=0.16 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|++.|++|+|||+|+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 476
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.40 E-value=0.16 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999875
No 477
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=90.39 E-value=0.31 Score=56.59 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
.+.+|+.||+|+|||.++-..+... +...+.+..
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 3689999999999999876555443 555555543
No 478
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.36 E-value=0.16 Score=45.77 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...|++.|++|+|||++++.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999873
No 479
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.34 E-value=0.24 Score=49.91 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
++.-+.|.||+|+|||||++.++......
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 44678999999999999999999988544
No 480
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=90.32 E-value=1.3 Score=49.20 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--------~~~~i~v~~ 275 (489)
+++++.+|+|+|||..+-..+... +.+++.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 679999999999999877766554 555555544
No 481
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.31 E-value=0.13 Score=51.18 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.+.++||.|++|+|||++|-++.. -|..++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 457899999999999999988765 355544
No 482
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=90.30 E-value=0.14 Score=48.94 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=24.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
-+.|+|++|||||++++.+...+|.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 477999999999999999999888765
No 483
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.22 E-value=0.15 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.|++.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999864
No 484
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.19 E-value=0.2 Score=44.01 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+++.|++|+|||+++..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
No 485
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.12 E-value=0.19 Score=45.10 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...|++.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999875
No 486
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=90.08 E-value=0.47 Score=45.76 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 487
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.07 E-value=0.18 Score=44.97 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+..+...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 488
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.06 E-value=0.18 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999864
No 489
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.04 E-value=0.53 Score=44.69 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
.-.+++||.|+|||+.+-..+... |..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456789999999997776665544 55665554
No 490
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.98 E-value=0.19 Score=44.64 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 491
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.98 E-value=0.13 Score=45.29 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~ 264 (489)
....|++.|++|+|||+|+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999998863
No 492
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.96 E-value=0.19 Score=44.86 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+.++....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
No 493
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.90 E-value=0.19 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~e 265 (489)
+...+++.|++|+|||+++..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999999753
No 494
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.89 E-value=0.4 Score=45.93 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
..|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999976
No 495
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.88 E-value=0.21 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 357999999999999999999873
No 496
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.84 E-value=0.19 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999998753
No 497
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.82 E-value=0.18 Score=45.12 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
-.|+|.|++|+|||+|+..+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 498
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.79 E-value=0.18 Score=45.12 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|+|.|++|+|||+|+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999888764
No 499
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.78 E-value=0.18 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|++.|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35999999999999999998864
No 500
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.77 E-value=0.25 Score=50.84 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
..|+++.|++|+|||++++.+...+ +.+++.++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 3799999999999999998877654 777777765
Done!