Query 011308
Match_columns 489
No_of_seqs 499 out of 1418
Neff 11.3
Searched_HMMs 46136
Date Thu Mar 28 23:54:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0569 Permease of the major 100.0 1.7E-42 3.6E-47 321.6 42.1 436 50-487 10-471 (485)
2 TIGR01299 synapt_SV2 synaptic 100.0 8.7E-43 1.9E-47 344.8 37.7 416 47-477 163-740 (742)
3 PRK10077 xylE D-xylose transpo 100.0 1E-41 2.3E-46 333.5 43.6 431 47-488 8-475 (479)
4 TIGR00887 2A0109 phosphate:H+ 100.0 4.5E-42 9.7E-47 336.1 35.0 430 47-484 12-502 (502)
5 TIGR00879 SP MFS transporter, 100.0 3.7E-40 8E-45 323.6 42.3 432 47-479 24-479 (481)
6 KOG0254 Predicted transporter 100.0 6E-39 1.3E-43 313.8 42.8 439 48-487 42-500 (513)
7 COG2814 AraJ Arabinose efflux 100.0 3.1E-40 6.7E-45 297.1 30.2 377 47-473 9-389 (394)
8 COG2271 UhpC Sugar phosphate p 100.0 7.5E-42 1.6E-46 302.4 16.5 405 47-473 25-437 (448)
9 TIGR00898 2A0119 cation transp 100.0 1E-39 2.2E-44 321.2 32.0 389 72-480 110-504 (505)
10 PRK10642 proline/glycine betai 100.0 6.4E-38 1.4E-42 305.6 34.6 396 50-476 15-435 (490)
11 PRK03545 putative arabinose tr 100.0 8.3E-38 1.8E-42 297.1 31.8 371 48-471 6-381 (390)
12 PRK12307 putative sialic acid 100.0 4.8E-37 1E-41 296.0 34.1 394 47-473 14-412 (426)
13 PRK09556 uhpT sugar phosphate 100.0 6.7E-39 1.5E-43 311.0 21.4 396 49-469 27-448 (467)
14 PRK11663 regulatory protein Uh 100.0 5.9E-38 1.3E-42 301.5 26.2 401 49-476 21-430 (434)
15 TIGR02332 HpaX 4-hydroxyphenyl 100.0 1.1E-37 2.4E-42 297.0 26.2 392 47-459 4-410 (412)
16 PRK09705 cynX putative cyanate 100.0 1.7E-36 3.8E-41 287.4 32.5 375 49-478 8-389 (393)
17 PRK11551 putative 3-hydroxyphe 100.0 1.4E-36 3E-41 290.8 31.9 377 46-468 10-394 (406)
18 TIGR00903 2A0129 major facilit 100.0 7.7E-37 1.7E-41 284.9 27.8 353 65-467 5-362 (368)
19 PF00083 Sugar_tr: Sugar (and 100.0 3E-43 6.4E-48 341.6 -19.0 428 57-485 6-451 (451)
20 PRK10406 alpha-ketoglutarate t 100.0 3.4E-36 7.4E-41 289.3 30.1 378 48-468 19-422 (432)
21 PRK14995 methyl viologen resis 100.0 3.4E-36 7.4E-41 293.6 30.3 382 48-445 3-413 (495)
22 TIGR00891 2A0112 putative sial 100.0 3.4E-35 7.4E-40 281.7 33.3 387 46-454 7-400 (405)
23 TIGR00890 2A0111 Oxalate/Forma 100.0 9.7E-36 2.1E-40 282.7 28.8 369 50-463 3-375 (377)
24 PRK09952 shikimate transporter 100.0 5.5E-35 1.2E-39 280.9 32.0 387 46-472 17-434 (438)
25 PRK15034 nitrate/nitrite trans 100.0 1.1E-34 2.4E-39 271.3 31.6 373 50-471 33-455 (462)
26 KOG0253 Synaptic vesicle trans 100.0 4.2E-35 9.2E-40 252.8 25.7 416 46-478 73-527 (528)
27 TIGR00893 2A0114 d-galactonate 100.0 1.6E-35 3.6E-40 283.3 25.3 386 61-467 4-396 (399)
28 PRK05122 major facilitator sup 100.0 1.5E-34 3.1E-39 276.1 31.6 364 51-469 15-388 (399)
29 PRK10213 nepI ribonucleoside t 100.0 6.8E-34 1.5E-38 269.4 34.8 368 47-466 16-387 (394)
30 PRK11273 glpT sn-glycerol-3-ph 100.0 1.3E-34 2.8E-39 279.9 29.6 395 48-470 26-435 (452)
31 PRK15075 citrate-proton sympor 100.0 8.7E-34 1.9E-38 272.8 35.0 359 49-449 13-398 (434)
32 PRK03893 putative sialic acid 100.0 7.2E-34 1.6E-38 279.4 34.0 405 47-461 16-444 (496)
33 PRK10091 MFS transport protein 100.0 2.3E-34 4.9E-39 272.4 29.2 368 53-471 5-377 (382)
34 PRK10489 enterobactin exporter 100.0 3.1E-35 6.6E-40 282.1 23.5 383 59-487 25-416 (417)
35 TIGR00894 2A0114euk Na(+)-depe 100.0 1E-34 2.2E-39 282.4 25.4 396 46-468 14-448 (465)
36 PRK15402 multidrug efflux syst 100.0 4.5E-34 9.8E-39 273.1 28.5 366 47-454 9-379 (406)
37 PRK12382 putative transporter; 100.0 2.3E-33 4.9E-38 267.1 33.0 362 53-469 17-388 (392)
38 KOG1330 Sugar transporter/spin 100.0 1.4E-35 2.9E-40 265.4 15.6 374 45-446 27-413 (493)
39 PRK10504 putative transporter; 100.0 4.9E-34 1.1E-38 278.4 27.7 381 52-449 11-419 (471)
40 PRK03633 putative MFS family t 100.0 6.7E-33 1.4E-37 262.5 34.0 359 52-467 7-369 (381)
41 TIGR00892 2A0113 monocarboxyla 100.0 3.9E-34 8.4E-39 275.9 25.4 393 47-465 15-416 (455)
42 PRK03699 putative transporter; 100.0 8.9E-34 1.9E-38 269.5 26.5 368 49-467 5-377 (394)
43 PLN00028 nitrate transmembrane 100.0 6.5E-34 1.4E-38 275.7 25.8 380 50-469 35-432 (476)
44 KOG0255 Synaptic vesicle trans 100.0 8.6E-33 1.9E-37 272.3 33.1 427 39-484 73-506 (521)
45 KOG0252 Inorganic phosphate tr 100.0 5.3E-35 1.1E-39 260.2 15.1 432 46-487 36-514 (538)
46 TIGR00711 efflux_EmrB drug res 100.0 7.9E-34 1.7E-38 278.6 24.6 380 52-446 3-411 (485)
47 TIGR00712 glpT glycerol-3-phos 100.0 2.1E-33 4.5E-38 270.5 26.0 402 49-474 25-437 (438)
48 TIGR00895 2A0115 benzoate tran 100.0 7.4E-33 1.6E-37 264.9 28.9 381 47-442 13-397 (398)
49 PRK09874 drug efflux system pr 100.0 1.7E-32 3.7E-37 263.1 30.6 372 53-471 16-399 (408)
50 TIGR00897 2A0118 polyol permea 100.0 8E-32 1.7E-36 256.7 34.1 373 55-468 17-399 (402)
51 TIGR00710 efflux_Bcr_CflA drug 100.0 1.2E-32 2.7E-37 262.1 28.6 348 54-444 8-360 (385)
52 TIGR00900 2A0121 H+ Antiporter 100.0 4.6E-33 1E-37 263.1 25.3 351 56-447 4-365 (365)
53 COG2223 NarK Nitrate/nitrite t 100.0 2.6E-33 5.7E-38 249.0 21.8 383 49-471 12-402 (417)
54 TIGR00881 2A0104 phosphoglycer 100.0 8.1E-34 1.8E-38 269.7 18.2 370 59-452 3-379 (379)
55 PRK15403 multidrug efflux syst 100.0 2.5E-32 5.4E-37 260.2 28.3 368 53-463 18-390 (413)
56 PRK11043 putative transporter; 100.0 1.3E-31 2.7E-36 256.0 31.9 343 60-448 15-360 (401)
57 TIGR00899 2A0120 sugar efflux 100.0 5.6E-32 1.2E-36 256.6 28.7 359 58-467 4-371 (375)
58 PRK10473 multidrug efflux syst 100.0 5.1E-32 1.1E-36 257.8 28.1 350 55-457 7-361 (392)
59 PRK11195 lysophospholipid tran 100.0 1.4E-31 3.1E-36 253.4 28.3 370 55-470 7-380 (393)
60 PRK10133 L-fucose transporter; 100.0 1.1E-31 2.4E-36 256.8 26.8 367 49-464 24-427 (438)
61 KOG2532 Permease of the major 100.0 4.6E-32 9.9E-37 255.7 23.8 363 78-470 65-447 (466)
62 cd06174 MFS The Major Facilita 100.0 1.4E-30 3E-35 244.9 30.8 342 55-467 3-349 (352)
63 PF07690 MFS_1: Major Facilita 100.0 2.7E-32 5.8E-37 256.5 18.7 343 57-436 2-352 (352)
64 PRK10054 putative transporter; 100.0 5.9E-31 1.3E-35 249.4 26.7 366 55-467 11-381 (395)
65 PRK11010 ampG muropeptide tran 100.0 6.8E-31 1.5E-35 255.0 27.4 372 55-469 16-402 (491)
66 TIGR00885 fucP L-fucose:H+ sym 100.0 2.5E-30 5.5E-35 245.3 29.2 354 53-458 5-400 (410)
67 PRK11102 bicyclomycin/multidru 100.0 1.4E-30 3E-35 247.1 26.3 333 65-439 5-343 (377)
68 TIGR00883 2A0106 metabolite-pr 100.0 9.3E-31 2E-35 250.1 25.1 358 61-459 3-390 (394)
69 PRK11646 multidrug resistance 100.0 2E-30 4.4E-35 246.2 27.1 359 58-467 17-385 (400)
70 TIGR00902 2A0127 phenyl propri 100.0 9.1E-30 2E-34 240.9 30.3 359 56-466 9-375 (382)
71 PRK11652 emrD multidrug resist 100.0 5.9E-30 1.3E-34 243.8 29.0 350 49-445 6-360 (394)
72 KOG2533 Permease of the major 100.0 6.9E-31 1.5E-35 248.0 20.9 279 50-348 44-336 (495)
73 TIGR00896 CynX cyanate transpo 100.0 8.3E-30 1.8E-34 239.3 27.7 332 65-448 14-351 (355)
74 TIGR00889 2A0110 nucleoside tr 100.0 1.5E-29 3.4E-34 241.0 29.0 374 57-477 8-409 (418)
75 PRK15011 sugar efflux transpor 100.0 2E-29 4.4E-34 239.4 29.2 358 57-468 21-389 (393)
76 PRK09528 lacY galactoside perm 100.0 4.9E-29 1.1E-33 239.3 27.7 375 59-473 18-406 (420)
77 TIGR00886 2A0108 nitrite extru 100.0 7.2E-30 1.6E-34 241.2 21.3 343 55-431 5-365 (366)
78 PRK11128 putative 3-phenylprop 100.0 3.4E-28 7.4E-33 230.2 29.2 355 60-466 13-375 (382)
79 PRK11902 ampG muropeptide tran 100.0 2.8E-28 6.1E-33 232.5 27.4 366 57-468 5-388 (402)
80 KOG3764 Vesicular amine transp 100.0 2.7E-30 6E-35 226.2 11.7 346 83-468 101-452 (464)
81 KOG2504 Monocarboxylate transp 100.0 3.5E-29 7.6E-34 239.2 18.8 404 46-468 41-474 (509)
82 PRK10207 dipeptide/tripeptide 100.0 7.3E-28 1.6E-32 232.4 25.6 408 51-469 14-475 (489)
83 TIGR00882 2A0105 oligosacchari 100.0 1.4E-27 3.1E-32 227.4 26.8 373 55-467 6-392 (396)
84 PRK08633 2-acyl-glycerophospho 100.0 1E-27 2.2E-32 259.0 27.4 356 70-462 29-402 (1146)
85 PF05977 MFS_3: Transmembrane 100.0 3.6E-27 7.8E-32 226.6 25.8 371 53-467 12-391 (524)
86 PRK06814 acylglycerophosphoeth 100.0 2.4E-27 5.3E-32 255.0 26.5 341 90-462 54-414 (1140)
87 TIGR00924 yjdL_sub1_fam amino 100.0 1.2E-26 2.5E-31 224.2 27.5 410 53-471 12-469 (475)
88 COG0738 FucP Fucose permease [ 100.0 4.7E-27 1E-31 207.7 22.0 366 52-467 14-406 (422)
89 COG2807 CynX Cyanate permease 100.0 7.4E-26 1.6E-30 197.0 28.8 366 50-467 11-382 (395)
90 PF06609 TRI12: Fungal trichot 100.0 5.1E-26 1.1E-30 217.4 29.5 376 56-443 49-465 (599)
91 TIGR00806 rfc RFC reduced fola 100.0 1E-26 2.2E-31 213.1 22.4 397 52-465 28-443 (511)
92 TIGR00805 oat sodium-independe 100.0 4.5E-27 9.8E-32 233.1 20.5 301 54-367 36-415 (633)
93 TIGR00792 gph sugar (Glycoside 99.9 2E-26 4.3E-31 223.0 22.2 336 73-449 22-384 (437)
94 KOG2615 Permease of the major 99.9 2.7E-26 6E-31 200.0 20.6 344 90-462 70-432 (451)
95 TIGR02718 sider_RhtX_FptX side 99.9 5.9E-25 1.3E-29 209.0 31.2 371 53-465 3-386 (390)
96 TIGR00901 2A0125 AmpG-related 99.9 5.6E-26 1.2E-30 213.5 23.7 325 67-429 4-355 (356)
97 PTZ00207 hypothetical protein; 99.9 3.1E-24 6.6E-29 206.8 30.4 406 46-473 23-555 (591)
98 PRK09584 tppB putative tripept 99.9 2.1E-24 4.6E-29 209.8 23.6 405 55-467 25-476 (500)
99 PF03825 Nuc_H_symport: Nucleo 99.9 1.2E-22 2.7E-27 189.9 26.9 375 58-474 9-399 (400)
100 TIGR01301 GPH_sucrose GPH fami 99.9 9.3E-22 2E-26 186.0 29.0 392 55-475 8-476 (477)
101 KOG4686 Predicted sugar transp 99.9 3.9E-24 8.4E-29 178.7 11.1 391 47-472 40-445 (459)
102 TIGR00788 fbt folate/biopterin 99.9 9.2E-23 2E-27 196.6 20.4 382 53-457 28-430 (468)
103 PRK15462 dipeptide/tripeptide 99.9 3.5E-21 7.6E-26 182.9 27.9 405 54-462 12-469 (493)
104 PRK09669 putative symporter Ya 99.9 6.5E-22 1.4E-26 191.1 22.7 333 73-448 32-391 (444)
105 PF01306 LacY_symp: LacY proto 99.9 5E-22 1.1E-26 181.8 18.1 378 55-476 11-406 (412)
106 KOG2563 Permease of the major 99.9 9E-21 1.9E-25 170.2 24.8 397 44-478 38-458 (480)
107 PF13347 MFS_2: MFS/sugar tran 99.9 2E-20 4.4E-25 179.8 23.9 338 72-449 23-388 (428)
108 PF11700 ATG22: Vacuole efflux 99.9 7.3E-19 1.6E-23 167.6 31.7 348 91-468 73-466 (477)
109 PRK10429 melibiose:sodium symp 99.9 3.2E-20 6.9E-25 180.4 22.5 347 64-448 19-396 (473)
110 PRK09848 glucuronide transport 99.9 1.5E-19 3.3E-24 175.0 23.5 330 74-448 32-391 (448)
111 PRK11462 putative transporter; 99.8 1.6E-18 3.5E-23 167.2 25.7 332 74-448 33-390 (460)
112 TIGR01272 gluP glucose/galacto 99.8 4.3E-19 9.3E-24 161.7 20.0 274 137-457 6-302 (310)
113 COG2211 MelB Na+/melibiose sym 99.8 1.6E-18 3.6E-23 160.3 22.2 337 74-448 36-399 (467)
114 COG3104 PTR2 Dipeptide/tripept 99.8 2.3E-17 5.1E-22 151.2 25.5 409 53-468 23-485 (498)
115 KOG2325 Predicted transporter/ 99.8 1.3E-18 2.8E-23 161.2 17.3 394 46-468 29-473 (488)
116 COG2270 Permeases of the major 99.8 3E-16 6.5E-21 140.7 24.2 346 88-474 58-432 (438)
117 KOG3626 Organic anion transpor 99.7 3.4E-16 7.4E-21 151.2 21.6 304 51-367 97-477 (735)
118 PRK10642 proline/glycine betai 99.7 4.3E-17 9.4E-22 159.4 14.3 182 70-253 269-459 (490)
119 PF03137 OATP: Organic Anion T 99.7 1.1E-18 2.4E-23 168.8 -0.2 382 54-446 6-515 (539)
120 PF03209 PUCC: PUCC protein; 99.7 4.4E-14 9.5E-19 127.4 27.3 345 77-466 6-394 (403)
121 TIGR00880 2_A_01_02 Multidrug 99.6 1.5E-15 3.2E-20 122.2 10.0 136 94-230 4-140 (141)
122 KOG2816 Predicted transporter 99.6 3.6E-14 7.7E-19 134.0 17.9 355 52-445 23-392 (463)
123 TIGR00889 2A0110 nucleoside tr 99.6 6.3E-15 1.4E-19 140.8 10.3 160 72-232 229-406 (418)
124 PRK15011 sugar efflux transpor 99.6 7.1E-14 1.5E-18 133.0 15.6 155 72-230 237-392 (393)
125 TIGR01299 synapt_SV2 synaptic 99.6 4.8E-14 1E-18 141.0 14.8 139 92-232 599-737 (742)
126 PRK09528 lacY galactoside perm 99.6 1.3E-14 2.7E-19 139.6 10.2 148 82-232 258-407 (420)
127 PF03092 BT1: BT1 family; Int 99.6 6.4E-14 1.4E-18 133.5 14.2 356 71-447 10-382 (433)
128 PRK05122 major facilitator sup 99.5 9.9E-14 2.1E-18 132.6 15.0 155 71-230 236-390 (399)
129 TIGR00890 2A0111 Oxalate/Forma 99.5 3.1E-14 6.8E-19 135.1 11.1 147 72-221 226-374 (377)
130 PRK11551 putative 3-hydroxyphe 99.5 7.3E-14 1.6E-18 133.9 12.3 156 71-228 240-395 (406)
131 cd06174 MFS The Major Facilita 99.5 1.6E-13 3.4E-18 128.9 13.3 164 61-227 185-350 (352)
132 PRK12382 putative transporter; 99.5 2.5E-13 5.4E-18 129.5 14.8 151 71-226 236-386 (392)
133 TIGR00902 2A0127 phenyl propri 99.5 4E-13 8.6E-18 127.4 14.6 156 64-224 218-374 (382)
134 TIGR00899 2A0120 sugar efflux 99.5 3.9E-13 8.4E-18 127.5 14.5 150 77-230 226-375 (375)
135 TIGR00892 2A0113 monocarboxyla 99.5 4E-13 8.7E-18 130.1 14.0 161 61-223 251-415 (455)
136 PRK09874 drug efflux system pr 99.5 2.7E-13 5.8E-18 130.2 10.9 157 70-227 238-396 (408)
137 PF05631 DUF791: Protein of un 99.4 5.6E-12 1.2E-16 112.1 17.0 244 69-347 52-304 (354)
138 PRK03633 putative MFS family t 99.4 1.4E-12 3E-17 123.7 13.4 149 72-226 221-369 (381)
139 TIGR00893 2A0114 d-galactonate 99.4 1.5E-12 3.2E-17 124.5 13.5 168 55-225 219-395 (399)
140 PF01770 Folate_carrier: Reduc 99.4 4.5E-11 9.8E-16 109.5 21.6 370 51-437 5-394 (412)
141 PRK09556 uhpT sugar phosphate 99.4 2.2E-12 4.9E-17 125.6 13.7 170 54-226 261-446 (467)
142 PRK03699 putative transporter; 99.4 2.4E-12 5.1E-17 122.7 13.3 157 69-229 223-380 (394)
143 PRK03893 putative sialic acid 99.4 1.2E-12 2.5E-17 129.1 11.4 148 70-220 294-444 (496)
144 PRK09705 cynX putative cyanate 99.4 6.3E-12 1.4E-16 119.6 16.0 160 69-232 223-385 (393)
145 TIGR00883 2A0106 metabolite-pr 99.4 7.2E-13 1.6E-17 126.6 9.3 156 61-218 229-390 (394)
146 COG2814 AraJ Arabinose efflux 99.4 1.2E-11 2.6E-16 112.7 16.2 172 291-471 15-189 (394)
147 PRK10054 putative transporter; 99.4 5.6E-12 1.2E-16 119.9 14.3 158 305-472 23-184 (395)
148 TIGR00897 2A0118 polyol permea 99.4 3.6E-12 7.7E-17 121.8 13.0 157 67-228 238-400 (402)
149 PRK10489 enterobactin exporter 99.4 5.2E-12 1.1E-16 121.4 14.1 159 71-232 243-403 (417)
150 TIGR02332 HpaX 4-hydroxyphenyl 99.4 2.6E-11 5.7E-16 116.0 18.3 176 290-474 9-193 (412)
151 TIGR00891 2A0112 putative sial 99.4 1.7E-12 3.8E-17 124.4 10.3 139 73-213 260-400 (405)
152 PRK11663 regulatory protein Uh 99.4 1.2E-11 2.6E-16 119.3 15.8 158 306-472 40-200 (434)
153 PRK11128 putative 3-phenylprop 99.4 8.1E-12 1.7E-16 118.5 14.3 149 71-224 225-374 (382)
154 PRK03545 putative arabinose tr 99.4 1.5E-11 3.3E-16 117.1 15.9 149 74-227 229-378 (390)
155 PRK10213 nepI ribonucleoside t 99.4 2E-11 4.3E-16 116.1 16.6 155 310-473 41-198 (394)
156 TIGR00879 SP MFS transporter, 99.4 5.9E-12 1.3E-16 123.6 13.4 178 52-232 285-474 (481)
157 TIGR00710 efflux_Bcr_CflA drug 99.4 2E-11 4.3E-16 116.2 15.8 160 306-474 22-184 (385)
158 COG2271 UhpC Sugar phosphate p 99.4 3.8E-12 8.2E-17 114.5 9.9 175 290-473 30-209 (448)
159 TIGR00895 2A0115 benzoate tran 99.4 1.5E-11 3.2E-16 117.7 14.7 161 304-473 32-195 (398)
160 PRK09952 shikimate transporter 99.3 8.5E-12 1.8E-16 120.4 12.8 157 73-231 272-435 (438)
161 TIGR00711 efflux_EmrB drug res 99.3 1.6E-11 3.4E-16 120.8 14.1 162 304-474 17-181 (485)
162 PRK14995 methyl viologen resis 99.3 4.4E-11 9.5E-16 117.3 15.8 167 298-473 15-185 (495)
163 TIGR00900 2A0121 H+ Antiporter 99.3 6.7E-11 1.5E-15 111.7 16.6 158 307-468 17-177 (365)
164 PRK10473 multidrug efflux syst 99.3 4.3E-11 9.2E-16 114.2 15.1 169 297-474 11-182 (392)
165 PLN00028 nitrate transmembrane 99.3 9.4E-11 2E-15 114.2 16.8 156 306-471 53-220 (476)
166 PRK10077 xylE D-xylose transpo 99.3 1.1E-10 2.3E-15 114.7 16.8 160 70-232 290-461 (479)
167 PRK15403 multidrug efflux syst 99.3 7E-11 1.5E-15 113.0 14.9 154 312-474 39-195 (413)
168 PF11700 ATG22: Vacuole efflux 99.3 8E-11 1.7E-15 112.9 14.8 180 50-231 280-470 (477)
169 PRK15402 multidrug efflux syst 99.3 1.1E-10 2.5E-15 111.8 16.0 178 288-474 12-192 (406)
170 PRK10091 MFS transport protein 99.3 1.1E-10 2.4E-15 110.7 15.8 160 306-474 20-182 (382)
171 PRK11646 multidrug resistance 99.3 8.2E-11 1.8E-15 112.1 14.8 150 314-473 36-188 (400)
172 PF07690 MFS_1: Major Facilita 99.3 3.4E-11 7.4E-16 113.1 11.8 157 306-471 13-173 (352)
173 KOG3762 Predicted transporter 99.3 2.4E-10 5.3E-15 105.7 16.7 175 280-467 366-544 (618)
174 TIGR00903 2A0129 major facilit 99.3 1.6E-10 3.4E-15 108.3 16.1 159 306-474 8-169 (368)
175 PRK11273 glpT sn-glycerol-3-ph 99.3 6.6E-11 1.4E-15 114.8 14.0 155 69-226 271-432 (452)
176 TIGR00887 2A0109 phosphate:H+ 99.3 7.1E-11 1.5E-15 116.2 14.3 161 71-232 308-492 (502)
177 TIGR00882 2A0105 oligosacchari 99.3 3.5E-11 7.5E-16 114.9 11.6 133 91-224 257-390 (396)
178 TIGR00881 2A0104 phosphoglycer 99.3 3.6E-11 7.8E-16 114.2 11.7 160 305-473 11-174 (379)
179 KOG2504 Monocarboxylate transp 99.3 4.7E-11 1E-15 115.1 12.4 177 51-229 298-476 (509)
180 PF05977 MFS_3: Transmembrane 99.3 9.7E-11 2.1E-15 113.5 14.5 153 69-224 236-389 (524)
181 PRK11652 emrD multidrug resist 99.3 1.9E-10 4.2E-15 109.7 16.5 155 311-474 30-187 (394)
182 PRK12307 putative sialic acid 99.3 1.1E-10 2.3E-15 112.8 14.6 137 71-210 251-389 (426)
183 PRK10504 putative transporter; 99.2 2.2E-10 4.8E-15 112.1 16.8 160 304-472 25-187 (471)
184 PRK11010 ampG muropeptide tran 99.2 5E-10 1.1E-14 109.4 18.1 154 74-230 246-404 (491)
185 PF06813 Nodulin-like: Nodulin 99.2 2.5E-10 5.3E-15 98.5 14.0 178 49-232 1-185 (250)
186 TIGR00712 glpT glycerol-3-phos 99.2 1.1E-10 2.5E-15 112.7 13.3 159 309-473 47-209 (438)
187 KOG0569 Permease of the major 99.2 3.7E-10 7.9E-15 106.4 15.7 161 68-232 287-458 (485)
188 PRK11102 bicyclomycin/multidru 99.2 2.3E-10 5E-15 108.6 14.7 155 310-473 12-169 (377)
189 TIGR00886 2A0108 nitrite extru 99.2 4.9E-10 1.1E-14 105.9 16.8 159 304-471 16-189 (366)
190 TIGR00898 2A0119 cation transp 99.2 8E-11 1.7E-15 116.3 11.7 138 92-232 359-498 (505)
191 PRK15462 dipeptide/tripeptide 99.2 1.6E-10 3.4E-15 110.6 13.1 155 305-467 25-186 (493)
192 KOG1330 Sugar transporter/spin 99.2 2.6E-11 5.7E-16 110.3 6.9 185 288-481 32-220 (493)
193 KOG3098 Uncharacterized conser 99.2 8.7E-09 1.9E-13 96.3 23.0 315 94-441 56-410 (461)
194 TIGR02718 sider_RhtX_FptX side 99.2 2.2E-10 4.7E-15 109.2 12.9 149 73-224 230-386 (390)
195 PRK11043 putative transporter; 99.2 7.8E-10 1.7E-14 105.9 16.7 151 312-471 29-182 (401)
196 TIGR00880 2_A_01_02 Multidrug 99.2 3.9E-10 8.6E-15 90.3 12.3 135 329-472 6-140 (141)
197 PRK11195 lysophospholipid tran 99.2 9.6E-10 2.1E-14 104.5 16.4 170 285-472 3-175 (393)
198 TIGR00924 yjdL_sub1_fam amino 99.2 8.8E-10 1.9E-14 107.1 16.4 154 304-466 25-188 (475)
199 TIGR00896 CynX cyanate transpo 99.2 2.4E-10 5.1E-15 107.5 11.7 136 70-208 216-353 (355)
200 PRK15075 citrate-proton sympor 99.2 4.3E-10 9.3E-15 108.6 13.4 135 69-205 256-396 (434)
201 TIGR01272 gluP glucose/galacto 99.2 5.6E-10 1.2E-14 102.0 13.2 159 53-217 142-303 (310)
202 TIGR00792 gph sugar (Glycoside 99.2 4.4E-10 9.5E-15 109.0 13.3 115 91-205 260-382 (437)
203 PRK09584 tppB putative tripept 99.1 4.3E-10 9.2E-15 110.0 12.9 151 305-463 37-194 (500)
204 COG2270 Permeases of the major 99.1 3.6E-10 7.8E-15 102.1 11.1 152 78-231 280-431 (438)
205 PRK10207 dipeptide/tripeptide 99.1 1.3E-09 2.9E-14 105.9 16.0 139 316-462 42-186 (489)
206 PRK10406 alpha-ketoglutarate t 99.1 9.1E-10 2E-14 106.3 13.4 157 70-229 262-424 (432)
207 TIGR00894 2A0114euk Na(+)-depe 99.1 9.7E-10 2.1E-14 107.3 12.7 140 326-472 81-221 (465)
208 PRK15034 nitrate/nitrite trans 99.1 1.2E-08 2.5E-13 96.8 18.9 164 305-473 50-235 (462)
209 TIGR00885 fucP L-fucose:H+ sym 99.1 7.1E-09 1.5E-13 98.9 17.5 155 306-466 20-203 (410)
210 PF03825 Nuc_H_symport: Nucleo 99.1 2.5E-09 5.4E-14 100.7 13.1 171 58-230 214-397 (400)
211 KOG3574 Acetyl-CoA transporter 99.0 3.5E-08 7.5E-13 87.5 18.8 361 48-447 28-433 (510)
212 PRK08633 2-acyl-glycerophospho 99.0 2.1E-09 4.5E-14 117.2 13.8 144 73-219 254-400 (1146)
213 KOG2615 Permease of the major 99.0 3.6E-09 7.8E-14 93.9 12.4 109 326-444 73-181 (451)
214 TIGR00901 2A0125 AmpG-related 99.0 1E-08 2.3E-13 96.4 15.7 160 307-473 6-181 (356)
215 PRK06814 acylglycerophosphoeth 99.0 2.7E-09 5.9E-14 115.9 12.7 148 70-219 244-412 (1140)
216 PF06609 TRI12: Fungal trichot 99.0 3.8E-09 8.3E-14 102.3 12.1 149 310-468 65-215 (599)
217 PRK11902 ampG muropeptide tran 99.0 5.4E-09 1.2E-13 100.0 13.1 146 75-227 234-388 (402)
218 KOG4686 Predicted sugar transp 99.0 7E-09 1.5E-13 88.2 11.9 159 49-213 265-426 (459)
219 PF06963 FPN1: Ferroportin1 (F 99.0 8.5E-07 1.8E-11 83.3 26.9 376 53-438 4-411 (432)
220 PF01306 LacY_symp: LacY proto 99.0 2.1E-09 4.6E-14 99.3 9.2 141 90-231 261-403 (412)
221 TIGR00769 AAA ADP/ATP carrier 99.0 8E-06 1.7E-10 77.8 33.2 281 53-361 9-343 (472)
222 KOG0637 Sucrose transporter an 99.0 1.4E-09 3E-14 98.9 7.6 136 64-201 45-203 (498)
223 COG0477 ProP Permeases of the 99.0 1.1E-08 2.4E-13 94.3 13.9 158 61-221 12-177 (338)
224 KOG3764 Vesicular amine transp 99.0 1.7E-09 3.6E-14 96.6 7.4 141 326-475 111-252 (464)
225 TIGR00805 oat sodium-independe 99.0 9.9E-09 2.1E-13 102.8 13.9 171 297-468 41-279 (633)
226 PRK09848 glucuronide transport 98.9 1E-08 2.2E-13 99.5 13.4 129 73-203 250-388 (448)
227 COG2223 NarK Nitrate/nitrite t 98.9 3.6E-08 7.8E-13 89.4 15.0 162 303-472 28-195 (417)
228 PF13347 MFS_2: MFS/sugar tran 98.9 1.3E-08 2.8E-13 98.2 13.2 146 56-204 230-385 (428)
229 KOG0253 Synaptic vesicle trans 98.9 1.4E-09 3.1E-14 95.9 5.7 131 99-232 392-522 (528)
230 TIGR00926 2A1704 Peptide:H+ sy 98.9 1.5E-07 3.3E-12 93.7 20.5 150 73-225 10-178 (654)
231 PRK10133 L-fucose transporter; 98.9 6.6E-08 1.4E-12 93.2 17.3 134 304-443 41-177 (438)
232 PTZ00207 hypothetical protein; 98.9 5.9E-08 1.3E-12 94.8 16.0 182 285-472 24-207 (591)
233 KOG3810 Micronutrient transpor 98.9 1.2E-07 2.5E-12 83.2 15.8 360 80-467 35-418 (433)
234 TIGR00806 rfc RFC reduced fola 98.9 1.8E-07 4E-12 87.4 17.8 136 305-451 42-181 (511)
235 PRK10429 melibiose:sodium symp 98.9 5.1E-08 1.1E-12 95.2 14.6 134 69-204 249-394 (473)
236 TIGR01301 GPH_sucrose GPH fami 98.8 9.9E-08 2.1E-12 91.2 15.4 169 305-474 20-222 (477)
237 KOG4332 Predicted sugar transp 98.8 7.8E-08 1.7E-12 81.2 12.3 357 69-466 55-427 (454)
238 COG2807 CynX Cyanate permease 98.8 3.2E-07 7E-12 81.5 15.0 154 68-224 225-380 (395)
239 PRK09669 putative symporter Ya 98.8 1.1E-07 2.4E-12 92.2 12.9 115 91-205 267-390 (444)
240 PF06779 DUF1228: Protein of u 98.7 2.3E-08 4.9E-13 69.4 5.5 81 63-145 4-84 (85)
241 COG3104 PTR2 Dipeptide/tripept 98.7 4.1E-08 8.9E-13 91.1 7.7 166 299-471 35-207 (498)
242 KOG0255 Synaptic vesicle trans 98.7 1.2E-07 2.6E-12 94.0 11.1 135 326-473 123-257 (521)
243 PF13000 Acatn: Acetyl-coenzym 98.7 1.1E-06 2.4E-11 81.5 16.3 144 54-201 3-178 (544)
244 PF02487 CLN3: CLN3 protein; 98.7 1.8E-06 3.9E-11 79.7 17.3 134 91-230 62-197 (402)
245 TIGR00788 fbt folate/biopterin 98.6 2E-07 4.3E-12 90.5 11.3 125 79-205 281-415 (468)
246 KOG2532 Permease of the major 98.6 3E-07 6.6E-12 87.9 11.9 139 326-471 78-217 (466)
247 PF00083 Sugar_tr: Sugar (and 98.6 6.1E-10 1.3E-14 108.4 -7.0 160 68-232 270-440 (451)
248 COG2211 MelB Na+/melibiose sym 98.6 1.4E-06 2.9E-11 81.9 15.2 141 61-202 246-395 (467)
249 KOG0254 Predicted transporter 98.6 6.5E-07 1.4E-11 88.3 13.6 138 325-473 93-232 (513)
250 KOG3762 Predicted transporter 98.6 7.4E-08 1.6E-12 89.7 6.3 163 62-227 382-545 (618)
251 COG0738 FucP Fucose permease [ 98.6 4E-06 8.6E-11 75.9 16.2 153 310-468 34-208 (422)
252 KOG2533 Permease of the major 98.5 5E-07 1.1E-11 86.7 10.1 140 326-474 86-231 (495)
253 KOG0252 Inorganic phosphate tr 98.5 1.4E-07 3.1E-12 86.1 5.1 179 51-233 304-502 (538)
254 PF06813 Nodulin-like: Nodulin 98.5 2.1E-06 4.5E-11 74.4 12.1 155 300-460 13-171 (250)
255 PRK11462 putative transporter; 98.5 2.2E-06 4.9E-11 83.2 13.6 112 91-202 266-386 (460)
256 KOG2816 Predicted transporter 98.5 5.2E-06 1.1E-10 79.2 15.2 138 330-479 71-208 (463)
257 KOG1237 H+/oligopeptide sympor 98.5 2.9E-05 6.3E-10 76.2 20.3 154 69-225 56-241 (571)
258 PF03209 PUCC: PUCC protein; 98.4 7E-06 1.5E-10 75.0 14.8 153 71-225 228-394 (403)
259 PF05978 UNC-93: Ion channel r 98.3 1.5E-05 3.3E-10 63.5 11.8 107 93-200 42-148 (156)
260 PF00854 PTR2: POT family; In 98.3 5.5E-05 1.2E-09 71.4 17.1 108 119-227 2-121 (372)
261 PF12832 MFS_1_like: MFS_1 lik 98.2 2E-06 4.3E-11 59.5 4.5 70 57-128 6-75 (77)
262 PF03219 TLC: TLC ATP/ADP tran 98.2 0.0089 1.9E-07 57.8 29.3 278 49-357 22-355 (491)
263 TIGR00926 2A1704 Peptide:H+ sy 98.1 0.00018 4E-09 72.1 17.7 151 317-468 16-180 (654)
264 PF05631 DUF791: Protein of un 98.0 0.00028 6.1E-09 63.7 15.5 153 314-475 59-221 (354)
265 KOG2325 Predicted transporter/ 98.0 3.6E-05 7.9E-10 72.7 9.9 144 326-474 76-233 (488)
266 TIGR00939 2a57 Equilibrative N 98.0 0.00039 8.4E-09 66.4 16.2 55 383-438 373-427 (437)
267 PF07672 MFS_Mycoplasma: Mycop 97.9 0.00014 3.1E-09 62.1 10.9 240 173-440 2-263 (267)
268 COG3202 ATP/ADP translocase [E 97.8 0.039 8.4E-07 52.1 27.2 152 49-204 25-211 (509)
269 KOG1479 Nucleoside transporter 97.7 0.0063 1.4E-07 56.2 18.9 118 54-176 21-151 (406)
270 PF03092 BT1: BT1 family; Int 97.7 0.00098 2.1E-08 64.1 13.4 153 314-472 15-177 (433)
271 KOG2563 Permease of the major 97.6 0.00078 1.7E-08 62.4 11.3 160 285-446 41-203 (480)
272 PF02487 CLN3: CLN3 protein; 97.4 0.0026 5.6E-08 59.2 12.5 107 91-201 284-395 (402)
273 PF05978 UNC-93: Ion channel r 97.2 0.042 9.2E-07 44.0 15.1 105 327-441 43-147 (156)
274 PRK03612 spermidine synthase; 97.0 0.032 7E-07 54.8 15.3 132 80-215 44-184 (521)
275 PF12832 MFS_1_like: MFS_1 lik 96.9 0.0056 1.2E-07 42.4 7.1 60 300-359 11-73 (77)
276 TIGR00769 AAA ADP/ATP carrier 96.8 0.081 1.8E-06 51.0 16.5 109 336-444 59-190 (472)
277 PF06963 FPN1: Ferroportin1 (F 96.8 0.0094 2E-07 56.6 10.1 145 56-202 263-417 (432)
278 PF00854 PTR2: POT family; In 96.8 0.011 2.4E-07 55.9 10.7 118 352-470 2-123 (372)
279 KOG3098 Uncharacterized conser 96.5 0.09 2E-06 50.1 14.4 100 99-199 290-410 (461)
280 KOG3626 Organic anion transpor 96.3 0.062 1.4E-06 53.9 12.4 167 305-471 113-344 (735)
281 COG0477 ProP Permeases of the 96.1 0.25 5.3E-06 44.9 15.0 127 326-459 44-174 (338)
282 PF01733 Nucleoside_tran: Nucl 96.1 0.0013 2.8E-08 60.2 -0.4 111 326-438 187-303 (309)
283 PF01770 Folate_carrier: Reduc 95.9 0.32 7E-06 45.7 14.3 147 309-465 24-177 (412)
284 PF03137 OATP: Organic Anion T 95.9 0.002 4.4E-08 63.4 0.1 168 302-469 16-249 (539)
285 TIGR00939 2a57 Equilibrative N 95.9 0.17 3.6E-06 48.7 12.6 106 92-198 311-429 (437)
286 PRK03612 spermidine synthase; 95.7 0.14 3E-06 50.5 11.5 49 416-464 142-191 (521)
287 KOG3097 Predicted membrane pro 95.6 1.6 3.5E-05 39.3 16.9 99 97-196 67-180 (390)
288 PF01733 Nucleoside_tran: Nucl 94.0 0.019 4.1E-07 52.6 0.6 108 92-199 186-306 (309)
289 PF06779 DUF1228: Protein of u 93.1 0.75 1.6E-05 32.3 7.2 67 307-373 10-79 (85)
290 PF03219 TLC: TLC ATP/ADP tran 91.7 6 0.00013 38.7 14.0 42 403-444 164-205 (491)
291 KOG1237 H+/oligopeptide sympor 91.3 6.6 0.00014 39.3 14.1 138 330-467 82-242 (571)
292 KOG1479 Nucleoside transporter 90.9 13 0.00028 35.0 14.6 21 405-426 139-159 (406)
293 KOG0637 Sucrose transporter an 90.7 0.31 6.8E-06 45.8 4.0 130 91-220 335-487 (498)
294 KOG2601 Iron transporter [Inor 90.4 1.9 4E-05 39.7 8.4 114 101-215 76-212 (503)
295 KOG4332 Predicted sugar transp 88.9 8.1 0.00018 34.0 10.7 134 90-224 284-426 (454)
296 KOG3880 Predicted small molecu 88.5 2.4 5.2E-05 37.9 7.4 142 53-201 253-402 (409)
297 KOG2881 Predicted membrane pro 87.7 18 0.00038 31.4 12.3 32 332-363 251-282 (294)
298 COG3202 ATP/ADP translocase [E 85.7 33 0.00071 33.3 13.7 112 333-444 74-209 (509)
299 KOG3880 Predicted small molecu 84.0 1.6 3.6E-05 38.9 4.2 134 91-230 65-201 (409)
300 KOG3574 Acetyl-CoA transporter 83.4 22 0.00048 33.3 11.1 31 409-439 159-189 (510)
301 PF07672 MFS_Mycoplasma: Mycop 80.9 12 0.00025 32.9 8.2 100 92-192 145-254 (267)
302 PF02990 EMP70: Endomembrane p 78.8 40 0.00087 33.5 12.4 14 278-291 251-264 (521)
303 PF06912 DUF1275: Protein of u 78.4 41 0.00089 28.6 13.6 26 180-205 165-190 (209)
304 KOG3810 Micronutrient transpor 78.0 6.3 0.00014 36.1 5.8 109 91-202 274-384 (433)
305 COG3619 Predicted membrane pro 76.4 49 0.0011 28.5 14.5 131 87-219 54-208 (226)
306 COG4262 Predicted spermidine s 70.6 48 0.001 30.6 9.3 83 86-168 41-132 (508)
307 KOG2601 Iron transporter [Inor 68.5 43 0.00094 31.3 8.7 50 413-462 169-218 (503)
308 PF11947 DUF3464: Protein of u 66.9 26 0.00057 27.9 6.3 32 403-434 114-145 (153)
309 PF13000 Acatn: Acetyl-coenzym 65.6 38 0.00082 33.0 8.2 44 147-190 411-454 (544)
310 COG1230 CzcD Co/Zn/Cd efflux s 63.2 66 0.0014 29.0 8.8 82 47-136 21-105 (296)
311 COG5336 Uncharacterized protei 62.3 36 0.00078 25.0 5.6 24 332-355 53-77 (116)
312 COG4769 Predicted membrane pro 61.4 16 0.00034 29.1 4.1 52 96-153 81-132 (181)
313 COG4262 Predicted spermidine s 61.4 1.2E+02 0.0026 28.2 10.0 18 426-443 146-163 (508)
314 PF11947 DUF3464: Protein of u 59.5 34 0.00074 27.2 5.7 52 139-193 95-146 (153)
315 COG5336 Uncharacterized protei 57.2 38 0.00083 24.8 5.1 35 413-447 36-70 (116)
316 KOG1278 Endosomal membrane pro 52.5 70 0.0015 31.4 7.5 26 322-347 360-385 (628)
317 PF12670 DUF3792: Protein of u 49.1 1.1E+02 0.0025 23.0 11.0 45 316-360 29-73 (116)
318 PF02632 BioY: BioY family; I 48.1 70 0.0015 25.5 6.0 25 95-119 60-84 (148)
319 PF02535 Zip: ZIP Zinc transpo 47.6 2.2E+02 0.0048 25.9 12.9 33 141-173 260-293 (317)
320 PF11151 DUF2929: Protein of u 46.4 78 0.0017 20.3 4.9 44 187-231 12-55 (57)
321 PRK10263 DNA translocase FtsK; 46.0 1.6E+02 0.0035 32.8 9.7 20 330-349 61-80 (1355)
322 PF01914 MarC: MarC family int 44.1 2E+02 0.0043 24.4 9.9 64 402-466 22-86 (203)
323 COG1268 BioY Uncharacterized c 41.7 88 0.0019 26.0 5.7 24 94-117 88-111 (184)
324 PF02694 UPF0060: Uncharacteri 41.6 79 0.0017 23.3 4.8 48 91-138 57-104 (107)
325 TIGR02230 ATPase_gene1 F0F1-AT 37.8 1.2E+02 0.0026 22.2 5.3 39 180-218 46-87 (100)
326 PF02694 UPF0060: Uncharacteri 36.8 1.3E+02 0.0028 22.2 5.2 47 323-369 56-102 (107)
327 PF06570 DUF1129: Protein of u 36.7 2.6E+02 0.0057 23.7 9.9 8 288-295 79-86 (206)
328 PF06027 DUF914: Eukaryotic pr 36.2 2.6E+02 0.0056 26.0 8.5 37 50-88 9-45 (334)
329 PRK02237 hypothetical protein; 35.6 1.4E+02 0.0029 22.2 5.2 47 91-137 59-105 (109)
330 COG2233 UraA Xanthine/uracil p 35.6 3.6E+02 0.0078 26.2 9.5 123 54-180 19-144 (451)
331 PF11299 DUF3100: Protein of u 32.3 90 0.002 26.8 4.5 50 146-196 176-225 (241)
332 PRK11111 hypothetical protein; 31.9 3.3E+02 0.0072 23.4 9.6 67 399-466 25-92 (214)
333 PF07456 Hpre_diP_synt_I: Hept 28.8 1.6E+02 0.0034 23.5 5.1 52 94-151 67-118 (148)
334 PRK02237 hypothetical protein; 28.2 1.4E+02 0.003 22.1 4.3 47 323-369 58-104 (109)
335 PF04226 Transgly_assoc: Trans 26.0 1.7E+02 0.0036 18.0 4.5 15 433-447 5-19 (48)
336 PF10785 NADH-u_ox-rdase: NADH 26.0 2.4E+02 0.0053 19.9 5.3 42 100-141 30-78 (86)
337 PTZ00370 STEVOR; Provisional 25.7 3.8E+02 0.0083 24.0 7.2 9 277-285 114-122 (296)
338 COG1288 Predicted membrane pro 25.6 6.2E+02 0.014 24.5 10.4 98 122-220 358-470 (481)
339 PRK10263 DNA translocase FtsK; 24.7 2.9E+02 0.0063 30.9 7.6 17 189-205 143-159 (1355)
340 PF05297 Herpes_LMP1: Herpesvi 23.5 27 0.00058 30.6 0.0 11 464-474 179-189 (381)
341 TIGR00427 membrane protein, Ma 23.4 4.6E+02 0.01 22.2 9.6 66 399-465 22-88 (201)
342 TIGR02230 ATPase_gene1 F0F1-AT 23.3 3.1E+02 0.0067 20.1 6.5 27 334-360 56-82 (100)
343 PF04024 PspC: PspC domain; I 23.2 73 0.0016 20.8 2.0 26 207-232 31-60 (61)
344 PF03547 Mem_trans: Membrane t 21.6 3.3E+02 0.0072 25.7 7.0 18 332-349 6-23 (385)
345 PRK10995 inner membrane protei 20.6 5.5E+02 0.012 22.1 10.0 66 400-466 24-90 (221)
No 1
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-42 Score=321.57 Aligned_cols=436 Identities=34% Similarity=0.562 Sum_probs=360.8
Q ss_pred hhHHHHHHHHhhhhccccccccchhhhhh--------hcccccccc----hHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 011308 50 LPHVLVAIISSFLFGYHLGVVNETLESIS--------LDLGFSGST----MAEGLVVSTCLGGAFVGSMFSGWIADGIGR 117 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~~~~----~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr 117 (489)
........++.+-.++....+++..+.+. +.+|.+.++ ...+.+.+++.+|.++|+++.|+++||+||
T Consensus 10 ~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GR 89 (485)
T KOG0569|consen 10 LLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGR 89 (485)
T ss_pred HHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445556666777777777777655443 344533222 236888999999999999999999999999
Q ss_pred hhHhhhhhHHHHHHHHHHhh---hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHH
Q 011308 118 RRAFQLCALPMIIGASMSAI---TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVAL 194 (489)
Q Consensus 118 r~~l~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~ 194 (489)
|..+.++.++..++.++..+ .+++.+++++|++.|+..|........++.|..|++.||....+.+.+..+|.+++.
T Consensus 90 K~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~ 169 (485)
T KOG0569|consen 90 KNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQ 169 (485)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHH
Confidence 99999998888888777765 468999999999999999999999999999999999999999999999999999997
Q ss_pred Hhhcc--cccccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHh-cCChHHHHHHHHHHhCCCCchHHHHHHhhh---h
Q 011308 195 FVGLP--AKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFK-RGRGAEAEAELERLFGGLHVKYSMAELSKS---E 268 (489)
Q Consensus 195 ~~~~~--l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 268 (489)
.++.. +.+... |++.+....+++++..+.+.++||||||+.. |++.+++++.++.+++..+.+.+.++..++ +
T Consensus 170 ~~~l~~ilGt~~~-W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~ 248 (485)
T KOG0569|consen 170 VLGLPSLLGTEDL-WPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEE 248 (485)
T ss_pred HHccHHhcCCCcc-hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHh
Confidence 77643 323344 9999999999999999999999999999998 899999999999999988765555443322 2
Q ss_pred hccchhhhhHHhhhccccccc-hhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHH
Q 011308 269 RGDEADAVKFSELISPRNFGV-VFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMIL 344 (489)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l 344 (489)
+..+++..+++++++++..+. ..+...+...+.+.+.+.+.+|...++.+.|++... .....++..++.++++.++
T Consensus 249 ~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~l 328 (485)
T KOG0569|consen 249 ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFL 328 (485)
T ss_pred ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222336678999999877665 455566677778889999999999999999988775 6777788899999999999
Q ss_pred HhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCC-CcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH
Q 011308 345 MDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSS-SGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV 423 (489)
Q Consensus 345 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 423 (489)
.||+|||++++.+..++.+..+++.......... .+..+..+.+.+++...++.|.+|+.+-+.+|++|++.|+.++++
T Consensus 329 id~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~ 408 (485)
T KOG0569|consen 329 IDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSV 408 (485)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHH
Confidence 9999999999999998888877776665443222 122334567788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHhhCC
Q 011308 424 CMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLP 487 (489)
Q Consensus 424 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (489)
...+..+..++-...+..+.+..|. ..|+.+++.+++..++.++..||||+|+.+|+.++.++
T Consensus 409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 9999999999999999999999997 68899999999999999999999999999888877553
No 2
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=8.7e-43 Score=344.77 Aligned_cols=416 Identities=21% Similarity=0.216 Sum_probs=316.1
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
++.|..+++++++.+..+++...++..+|.+.++++++..+. +++.+++.++++++++++|+++||+|||++++++++
T Consensus 163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li 240 (742)
T TIGR01299 163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS 240 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 446777778888888888888889999999999999987776 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc---
Q 011308 127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI--- 203 (489)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~--- 203 (489)
+.++++++++++++++.++++|+++|++.++..+....++.|++|+++|++.+++...++.+|.++++.++..+...
T Consensus 241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~ 320 (742)
T TIGR01299 241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW 320 (742)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876554432
Q ss_pred ----------cchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCch----HH---HHHHhh
Q 011308 204 ----------LGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVK----YS---MAELSK 266 (489)
Q Consensus 204 ----------~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~ 266 (489)
.+ ||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+... .. .+....
T Consensus 321 ~~~~g~~~~~~g-WR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~ 399 (742)
T TIGR01299 321 SFQMGSAYQFHS-WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT 399 (742)
T ss_pred hhcccccccccc-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence 34 9999999988888877777889999999999999999999998887654211 10 000000
Q ss_pred --hhh-----c-cch----------------hhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc---
Q 011308 267 --SER-----G-DEA----------------DAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA--- 319 (489)
Q Consensus 267 --~~~-----~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 319 (489)
... + ... ....++++++++..+..++..+++ +.....+..+..|+|.+++..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~w-f~~~~~yygl~~w~P~~~~~~~~~ 478 (742)
T TIGR01299 400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVW-FTLSFGYYGLSVWFPDMIKHLQAD 478 (742)
T ss_pred hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 000 001355667665555555444444 444445666677777654321
Q ss_pred ---------------------------------------CC---------------------------------------
Q 011308 320 ---------------------------------------GV--------------------------------------- 321 (489)
Q Consensus 320 ---------------------------------------~~--------------------------------------- 321 (489)
|+
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 558 (742)
T TIGR01299 479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN 558 (742)
T ss_pred HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence 00
Q ss_pred -------------------------C-----C-------CchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 011308 322 -------------------------P-----S-------DSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIA 364 (489)
Q Consensus 322 -------------------------~-----~-------~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 364 (489)
+ . .....+.+++.+++.++.++++||+|||+++..+.++.+++
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~ 638 (742)
T TIGR01299 559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS 638 (742)
T ss_pred cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0 0 00134556788999999999999999999999888888888
Q ss_pred HHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 365 MGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (489)
.+++.+.... ...++..++++++.+ +..+...++++|++|++.|++++|+.+....+|++++|.+.+.+.+
T Consensus 639 ~ll~~~~~s~--------~~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~ 709 (742)
T TIGR01299 639 CFFLSFGNSE--------SAMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709 (742)
T ss_pred HHHHHHHccH--------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776654321 112222333333332 3345667789999999999999999999999999999999998877
Q ss_pred HhccchhhHHHHHHHHHHHHHhhhcccCCCCCC
Q 011308 445 QLGPLILYTIFGSFCFLAVIYVKRNVMETKGKT 477 (489)
Q Consensus 445 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (489)
. +...+|++.+++.++++++.+ ++||++++.
T Consensus 710 ~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~ 740 (742)
T TIGR01299 710 I-TKAAPILFASAALACGGLLAL-KLPDTRGQV 740 (742)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence 5 455677777777777666555 458988764
No 3
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=100.00 E-value=1e-41 Score=333.52 Aligned_cols=431 Identities=33% Similarity=0.553 Sum_probs=318.4
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcc--------cccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDL--------GFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR 118 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr 118 (489)
+...+.++...++.+..+++...+++..|.+++++ +.+..+. +++.+++.++..++++++|+++||+|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ig~~~~~~~~G~l~dr~Grr 85 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL--GFCVASALIGCIIGGALGGYCSNRFGRR 85 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 34456677777888999999999999999998887 5655555 9999999999999999999999999999
Q ss_pred hHhhhhhHHHHHHHHHHhhh------------hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHH
Q 011308 119 RAFQLCALPMIIGASMSAIT------------KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAA 186 (489)
Q Consensus 119 ~~l~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~ 186 (489)
++++.+.+++.++.++++++ ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+.
T Consensus 86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 165 (479)
T PRK10077 86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI 165 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence 99999999999998888763 235678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccc--------cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCch
Q 011308 187 CLGILVALFVGLPAK--------EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVK 258 (489)
Q Consensus 187 ~~G~~i~~~~~~~l~--------~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (489)
.+|.++++.+++.+. +..+ ||+.|++.+++.++..+..+++||+|+++..+++.+++++..++..+.....
T Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~ 244 (479)
T PRK10077 166 IFGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT 244 (479)
T ss_pred HHHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHH
Confidence 999999887765443 3456 9999999888887776667779999999888888777766666554332221
Q ss_pred HHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHH
Q 011308 259 YSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANL 335 (489)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 335 (489)
...++..+..+.+ ....+..+. ..............+..........++.|.+.+..+.+... .....++..+
T Consensus 245 ~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~ 320 (479)
T PRK10077 245 QALQEIKHSLDHG---RKTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINL 320 (479)
T ss_pred HHHHHHHHHHHHh---hhhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 1111111100000 000011111 00011111111222223334455667778888887776543 4445677888
Q ss_pred HHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh
Q 011308 336 SGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR 415 (489)
Q Consensus 336 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 415 (489)
++.++.++++||++||+.+..+.++.+++.+++...... ............+++.+++....|..+.++.|.+|++
T Consensus 321 i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 396 (479)
T PRK10077 321 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA 396 (479)
T ss_pred HHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh
Confidence 999999999999999999999988888877766543321 1111223334455555555555677788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHhhCCC
Q 011308 416 IRAKAMAVCMAVHWVINFFVGLLFLRLL------EQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLPQ 488 (489)
Q Consensus 416 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (489)
.|+++.|+.+...+++.++++.+.+.+. +..++...|.+.+++++++.++.+++.||+|+++.+|.+++++++
T Consensus 397 ~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 475 (479)
T PRK10077 397 IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPE 475 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhc
Confidence 9999999999999999999987776544 567777888888888888888777788999999999988876654
No 4
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=4.5e-42 Score=336.07 Aligned_cols=430 Identities=20% Similarity=0.280 Sum_probs=305.9
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcc-c--ccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhh
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDL-G--FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQL 123 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~--~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~ 123 (489)
+..+..+.++.++.+.++++...++...|.+.+++ + ...+..+.+++.+.+.+++.++++++|+++||+|||+++..
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45566777888899999999999999998887653 1 11122234899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhh------HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 011308 124 CALPMIIGASMSAITKN------LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVG 197 (489)
Q Consensus 124 ~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~ 197 (489)
+.+++.++.++++++++ ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|..+++.++
T Consensus 92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~ 171 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA 171 (502)
T ss_pred HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888765 789999999999999999999999999999999999999999999999999998887
Q ss_pred ccccc-----------------------ccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChH-HHHHHHHHHhC
Q 011308 198 LPAKE-----------------------ILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGA-EAEAELERLFG 253 (489)
Q Consensus 198 ~~l~~-----------------------~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~ 253 (489)
..+.. ..+ ||++|.+.+++.++..+..+++||+|+|+..++|.+ ++++.+.+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~ 250 (502)
T TIGR00887 172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ 250 (502)
T ss_pred HHHHHHhccccccccccccccccccchhccc-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence 65421 125 999999999888887777788999999999888764 45655655543
Q ss_pred CCCchHHHHHHhhhhhccchhhhhHHhhhccc---cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc-----
Q 011308 254 GLHVKYSMAELSKSERGDEADAVKFSELISPR---NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS----- 325 (489)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 325 (489)
....+. .++..+.+++++....+++++++++ ..++..+......+.....+.....+.|.++++.|.+...
T Consensus 251 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~ 329 (502)
T TIGR00887 251 VKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNA 329 (502)
T ss_pred cccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhH
Confidence 221111 1111110011111223567776532 2212222222222211112233444567777776665331
Q ss_pred ----------hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHH
Q 011308 326 ----------GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLT 395 (489)
Q Consensus 326 ----------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
......++.+++.++.++++||+|||+.+..+..+..++..++.+..... ... .......+....
T Consensus 330 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~---~~~--~~~~~~~~~~~~ 404 (502)
T TIGR00887 330 YEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL---STH--GFLAIYVLAQFF 404 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc---chh--HHHHHHHHHHHH
Confidence 12233456667888999999999999998888777766665555432110 001 111222222233
Q ss_pred HhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccchhhHHHHHHHHHHHHH
Q 011308 396 FSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ----------LGPLILYTIFGSFCFLAVIY 465 (489)
Q Consensus 396 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~~~~~~~~~~~~~~~~~ 465 (489)
++.+..+..+.+..|.+|++.|+++.|+.+.+++++++++|.+.+.+.+. .++...|.+++++++++.++
T Consensus 405 ~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 405 ANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 34555667777889999999999999999999999999999999999884 33455778888888777665
Q ss_pred hhhcccCCCCCCHHHHHHh
Q 011308 466 VKRNVMETKGKTLQEIEMA 484 (489)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~ 484 (489)
. ++.||+++++++|+++|
T Consensus 485 ~-~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 485 T-LLIPETKGKSLEELSGE 502 (502)
T ss_pred h-eEeccCCCCCHHhhhCC
Confidence 4 56799999998887654
No 5
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=100.00 E-value=3.7e-40 Score=323.57 Aligned_cols=432 Identities=37% Similarity=0.627 Sum_probs=319.3
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhccccc------ccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFS------GSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA 120 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 120 (489)
++.+....++.++.++..++...+.+.+|.+..+++.+ .++.+.|++.+++.++..++++++|+++||+|||++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~ 103 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS 103 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence 34444555566677788888889999999999998887 334445999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhh---hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 011308 121 FQLCALPMIIGASMSAIT---KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVG 197 (489)
Q Consensus 121 l~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~ 197 (489)
+..+.+++.++.+++.+. .+++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|..+++.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999998554 34568999999999999999999999999999999999999999999999999999999
Q ss_pred ---cccccccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHH-h---h-hhh
Q 011308 198 ---LPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAEL-S---K-SER 269 (489)
Q Consensus 198 ---~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-~~~ 269 (489)
....+..+ ||+.|++.++..++..+..+++||+|++...+++.++..+...+..+.........+. . . .+.
T Consensus 184 ~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (481)
T TIGR00879 184 SGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI 262 (481)
T ss_pred HHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence 77667777 9999999777776666667778999988777776666555544443322221111110 0 0 000
Q ss_pred ccchhhhhHHhhhccc--cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHH
Q 011308 270 GDEADAVKFSELISPR--NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMIL 344 (489)
Q Consensus 270 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l 344 (489)
+.+.....+++.++.. ..+..+....+..+..........++.+.+.++.|.+... ......++.+++.++.+++
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 342 (481)
T TIGR00879 263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFL 342 (481)
T ss_pred HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011123333321 1233344444444444445556677788888888877743 4555677888999999999
Q ss_pred HhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCC--cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHH
Q 011308 345 MDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS--GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMA 422 (489)
Q Consensus 345 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 422 (489)
.||++||+.+..+..+..++.+++.+......... ......+....++..+++.+..+....++.|.+|++.|+++.|
T Consensus 343 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 422 (481)
T TIGR00879 343 VDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGIS 422 (481)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHH
Confidence 99999999988887777776666553322111110 0122333444555566666666777778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHH
Q 011308 423 VCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQ 479 (489)
Q Consensus 423 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (489)
+.+...+++++++|.+.+.+.++.++...|++.+++++++.++.+++.+|+++++.+
T Consensus 423 ~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~ 479 (481)
T TIGR00879 423 IAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE 479 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence 999999999999999999999999999999999999888888887778888776554
No 6
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=6e-39 Score=313.83 Aligned_cols=439 Identities=36% Similarity=0.599 Sum_probs=353.6
Q ss_pred chhhHHHHHHHHhhhhccc--cccccchhhhhhhccccccc---c--hHHHHHHHHHHHHHHHHHHHHHHhhcccCchhH
Q 011308 48 RSLPHVLVAIISSFLFGYH--LGVVNETLESISLDLGFSGS---T--MAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA 120 (489)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~---~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 120 (489)
..........+..+..+++ .+..++..+.+.++...+.. + .+.+|+.+++.++..++++++|+++|++|||+.
T Consensus 42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~ 121 (513)
T KOG0254|consen 42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT 121 (513)
T ss_pred ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3344445556666666665 55667777777664332211 1 234899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccc
Q 011308 121 FQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPA 200 (489)
Q Consensus 121 l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l 200 (489)
++++.+++.++.+++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++...
T Consensus 122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~ 201 (513)
T KOG0254|consen 122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT 201 (513)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997776666
Q ss_pred ccc-cchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhC--CCCchHHHHHHhhhh---hccchh
Q 011308 201 KEI-LGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFG--GLHVKYSMAELSKSE---RGDEAD 274 (489)
Q Consensus 201 ~~~-~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~ 274 (489)
.+. .+ ||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++.+ ..+...+.++..... ....+.
T Consensus 202 ~~~~~~-Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (513)
T KOG0254|consen 202 SKVYAG-WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEG 280 (513)
T ss_pred ccCCcc-HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccc
Confidence 543 35 99999999999998888878899999999999999999999999988 333333333333111 111111
Q ss_pred hhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCC--chhHHHHHHHHHHHHHHHHHHhhhCCch
Q 011308 275 AVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSD--SGNICVGIANLSGSIIAMILMDKLGRRV 352 (489)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~ 352 (489)
...+++++++...++..+...+..++.+++.+...+|.+.+++..+.... ......++...++..++.++.||+|||+
T Consensus 281 ~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ 360 (513)
T KOG0254|consen 281 KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK 360 (513)
T ss_pred cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 12356666655666777788888999999999999999999999888765 3566677888889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcccC----CCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHH
Q 011308 353 LLLGSFLGMAIAMGVQAIAATSFVS----SSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVH 428 (489)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 428 (489)
.++.+...+.++.++++........ .....+..+...+++...+..+..++.+.+.+|.+|.+.|+++.++...+.
T Consensus 361 lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n 440 (513)
T KOG0254|consen 361 LLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVN 440 (513)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHH
Confidence 9999999999998888776554322 223456677778888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HhhhcccCCCCCCHHHHHHhhCC
Q 011308 429 WVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVI-YVKRNVMETKGKTLQEIEMALLP 487 (489)
Q Consensus 429 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 487 (489)
.+...+-...+..+.+..+....|..+++++.+... ..+++.||+|+++++|+++.+++
T Consensus 441 ~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 441 WLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE 500 (513)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence 999888877777766665535567777777777777 78888999999999999886544
No 7
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-40 Score=297.11 Aligned_cols=377 Identities=19% Similarity=0.222 Sum_probs=300.0
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
+..+..++.+.++.|..+.........+|++++|+|+|..+. |++.|.|.++++++.++...+.||+.||++++..+.
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~ 86 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA 86 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 445667788888999999999999999999999999999888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308 127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW 206 (489)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 206 (489)
++.++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+..|
T Consensus 87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G- 165 (394)
T COG2814 87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG- 165 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccc
Q 011308 207 WRICFWVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPR 285 (489)
Q Consensus 207 Wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (489)
||+.|++.+..+++..+..+ .+| |+ +.+++.+.+..+..+.+|++
T Consensus 166 WR~~F~~ia~l~ll~~~~~~~~lP--~~--------------------------------~~~~~~~~~~~~~~~~l~~p 211 (394)
T COG2814 166 WRATFLAIAVLALLALLLLWKLLP--PS--------------------------------EISGSLPGPLRTLLRLLRRP 211 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--Cc--------------------------------cCCCCCCcchhHHHHHhcCc
Confidence 99999999999888776644 477 21 00111112223455678888
Q ss_pred cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308 286 NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMA 362 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 362 (489)
..+..++...+.....+. .+.|.-|...+..|++... ....++++.++|+.++|++.|| +.|+.+.....+..
T Consensus 212 ~v~~~l~~t~l~~~g~F~---~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a 287 (394)
T COG2814 212 GVLLGLLATFLFMTGHFA---LYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLA 287 (394)
T ss_pred hHHHHHHHHHHHHcchhh---hHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHH
Confidence 888777776666654333 3333344444456666554 6778899999999999999999 88888887777777
Q ss_pred HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL 442 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 442 (489)
+..+.+.+.... .+..+....+.++....... .......+..| +.++.+.+++....|+|..+|..++|.+
T Consensus 288 ~~~l~l~~~~~~-------~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~~p-~~~~~a~sl~~aa~nlgia~GA~lGG~v 358 (394)
T COG2814 288 LALLALTFTGAS-------PALALALLFLWGFAFSPALQ-GLQTRLARLAP-DAADLAGSLNVAAFNLGIALGAALGGLV 358 (394)
T ss_pred HHHHHHHHhcch-------HHHHHHHHHHHHHHhhhhhh-HHHHHhcccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776666554332 23333333333333322211 22223444334 7799999999999999999999999999
Q ss_pred HHHhccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308 443 LEQLGPLILYTIFGSFCFLAVIYVKRNVMET 473 (489)
Q Consensus 443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (489)
.|+.|+....++.+.+.+++.++.....+..
T Consensus 359 ~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 359 LDALGYAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999888888877766544433
No 8
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.5e-42 Score=302.44 Aligned_cols=405 Identities=16% Similarity=0.112 Sum_probs=309.3
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
+.++.++..+++++...++.+-.++.+.|.+.+|.++|.+|. |++.+.+.+.|.++.++.|.++||.++|+.+.++++
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi 102 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence 456778889999999999999999999999999999988888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhh--ccccccc
Q 011308 127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVG--LPAKEIL 204 (489)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~--~~l~~~~ 204 (489)
++++.+++++++++.+.+.++.+++|+.+|..+|.+...+..|++++|||+..++++++.++|..+.|++. +.+..+.
T Consensus 103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~ 182 (448)
T COG2271 103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG 182 (448)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 8888777
Q ss_pred chHHHHHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhc-cchhhhhHHhhh
Q 011308 205 GWWRICFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERG-DEADAVKFSELI 282 (489)
Q Consensus 205 ~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 282 (489)
+ ||..|++.++++++..+..++ .+|+|+..- -+..++.++ +. .+.+ .++++.+ -...+.-.+.++
T Consensus 183 ~-w~~~f~~pgiiaiival~~~~~~rd~Pqs~G-LP~ie~~~~-------d~---~e~~-~~~~~~~~ls~~~i~~~YVL 249 (448)
T COG2271 183 G-WRAAFYFPGIIAIIVALILLFLLRDRPQSEG-LPPIEEYRG-------DP---LEIY-EEEKENEGLTAWQIFVKYVL 249 (448)
T ss_pred c-hhHHHHHHHHHHHHHHHHHHHHhCCCccccC-CCCHHHhhc-------Cc---hhhh-hhhccCCCccHHHHHHHHHH
Confidence 7 999999999998887766544 788875210 001111110 00 0000 0011111 122334566788
Q ss_pred ccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhh--CCchhHHHH-HH
Q 011308 283 SPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKL--GRRVLLLGS-FL 359 (489)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~-~~ 359 (489)
+||..|.+.++..+....-+....+.+.|+....+....++.....++-+++++|.++.|+++||+ |||....+. .+
T Consensus 250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~ 329 (448)
T COG2271 250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML 329 (448)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 999999999999888887777777777776664433334444466777789999999999999996 455554333 33
Q ss_pred HHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHH
Q 011308 360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWV-INFFVGLL 438 (489)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~ 438 (489)
+..++++.+...+ +.+..+...++...++ +-.+..-+.-....|..|++..|++.|+...+.++ |...+...
T Consensus 330 ~i~~~~~~~w~~~------~~~~~l~~~~l~~iGf-~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~ 402 (448)
T COG2271 330 LITASLVLYWLAP------NGSYLLDAILLFIIGF-LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLP 402 (448)
T ss_pred HHHHHHHHHHcCC------CccHHHHHHHHHHHHH-HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCc
Confidence 3333333332222 2222333333322222 22233334455678999999999999999999999 88999999
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308 439 FLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMET 473 (489)
Q Consensus 439 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (489)
.|++.|.+||...|.++.+.++++.+++....+..
T Consensus 403 ~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~~ 437 (448)
T COG2271 403 LGYIADTWGWDGGFIVLSIAALLAILLLLPVWNAE 437 (448)
T ss_pred ceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999888888877666544433
No 9
>TIGR00898 2A0119 cation transport protein.
Probab=100.00 E-value=1e-39 Score=321.24 Aligned_cols=389 Identities=23% Similarity=0.319 Sum_probs=292.7
Q ss_pred chhhhhhhccccc---ccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 011308 72 ETLESISLDLGFS---GSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGR 148 (489)
Q Consensus 72 ~~~~~i~~~~~~~---~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 148 (489)
+..|.+.+|++++ ..+. +++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++.++++|++.++++|
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~--~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r 187 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKV--DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR 187 (505)
T ss_pred cccccEEEEecceechHHHH--HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 5678899999998 5555 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcc
Q 011308 149 LFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFC 228 (489)
Q Consensus 149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~ 228 (489)
++.|++.+...+....++.|++|+++|+++.++...+..+|.++++.+++.+.+ ||+.|++.+++.++..+..+++
T Consensus 188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999877654 9999999999888877777789
Q ss_pred cCChhHHHhcCChHHHHHHHHHHhCCCCch--HHHHHHh-hhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcch
Q 011308 229 AESPHWLFKRGRGAEAEAELERLFGGLHVK--YSMAELS-KSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGI 305 (489)
Q Consensus 229 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (489)
||+|+|+..+++.+++.+.+++..+.+... .+..+.. +++..+++++.+++++++++.++...+......+....
T Consensus 264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-- 341 (505)
T TIGR00898 264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF-- 341 (505)
T ss_pred CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH--
Confidence 999999999999888887776654332211 1111111 11111111234678888888877665555444332221
Q ss_pred hHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHH
Q 011308 306 NAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLS 385 (489)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (489)
..+..+......+.+........++..+++.++.+++.||+|||+.+..+.++.+++++++.+.... ..+..
T Consensus 342 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~------~~~~~ 413 (505)
T TIGR00898 342 --SYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVD------LYFLR 413 (505)
T ss_pred --HHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCC------chHHH
Confidence 1222223333344444445566778888999999999999999999988888777776665544321 11122
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 011308 386 LGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIY 465 (489)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 465 (489)
.....+..++.+ ...+..+.+..|.+|++.|++++|+.+....+|++++|.+.+ .+..++..++.+++++++++.++
T Consensus 414 ~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 414 TALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKWLFLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHHHHH
Confidence 222222222222 223456678899999999999999999999999999999998 44456667788888877777665
Q ss_pred hhhcccCCCCCCHHH
Q 011308 466 VKRNVMETKGKTLQE 480 (489)
Q Consensus 466 ~~~~~~~~~~~~~~~ 480 (489)
.+ +.||+++++++|
T Consensus 491 ~~-~lpet~~~~l~~ 504 (505)
T TIGR00898 491 TL-FLPETKGVPLPE 504 (505)
T ss_pred HH-cCcCCCCCCCCC
Confidence 54 578988876653
No 10
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=100.00 E-value=6.4e-38 Score=305.61 Aligned_cols=396 Identities=17% Similarity=0.206 Sum_probs=265.7
Q ss_pred hhHHHHHHHHhhhhccccccccchhhhhhhcccccccchH--HHH--HHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308 50 LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMA--EGL--VVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA 125 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~g~--~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 125 (489)
++.+....++.+++++|...++...|.+.++++.+.++.. .+. +.++..+++.+++++.|+++||+|||+++..++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3456677889999999999999999999999976544321 111 257788999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHH--------HHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 011308 126 LPMIIGASMSAITKNLWG--------MLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVG 197 (489)
Q Consensus 126 ~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~ 197 (489)
++++++++++++++|+++ ++++|+++|++.|...+....++.|++|+++|+++.++...+..+|..+++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 788999999999999999999999999999999999999988888888887665
Q ss_pred cccc--------cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhh
Q 011308 198 LPAK--------EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSER 269 (489)
Q Consensus 198 ~~l~--------~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (489)
..+. ...| ||+.|++.+++.++..++...+||+|+|...+++.++..+ +.
T Consensus 175 ~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~---------------------~~ 232 (490)
T PRK10642 175 VLISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR---------------------EG 232 (490)
T ss_pred HHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc---------------------cc
Confidence 4332 2456 9999999877666555555668999886543222111000 00
Q ss_pred ccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHH
Q 011308 270 GDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILM 345 (489)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~ 345 (489)
..+....++++++++ ..+.......... .....+.....+.|.++.+ .+.+... ......++.+++.++.|+++
T Consensus 233 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~ 310 (490)
T PRK10642 233 LQDGPKVSFKEIATK-HWRSLLTCIGLVI-ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLS 310 (490)
T ss_pred ccccccCCHHHHHHH-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112234455543 1222222221111 1122334455567776643 4665443 33445567778889999999
Q ss_pred hhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHH
Q 011308 346 DKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCM 425 (489)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 425 (489)
||+|||+.+..+.+...++......... ..+....+....+.+.+.+.... ....+..|.+|++.|+++.|+.+
T Consensus 311 dr~grr~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~ 384 (490)
T PRK10642 311 DRFGRRPFVILGSVALFVLAIPAFILIN-----SNVIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAF 384 (490)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHH
Confidence 9999999887766543332222111111 11112222333333333322222 33456778999999999999877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHhhhcccCCCCC
Q 011308 426 AVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVIYVKRNVMETKGK 476 (489)
Q Consensus 426 ~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (489)
....+++.++|.+.+++.+..+ +..++....+.++++.+..+ +.||++++
T Consensus 385 ~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~ 435 (490)
T PRK10642 385 NISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANR 435 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCC
Confidence 7777888999999999988755 45555555555555555444 45776543
No 11
>PRK03545 putative arabinose transporter; Provisional
Probab=100.00 E-value=8.3e-38 Score=297.08 Aligned_cols=371 Identities=15% Similarity=0.134 Sum_probs=272.9
Q ss_pred chhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHH
Q 011308 48 RSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALP 127 (489)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 127 (489)
++|..+..+.++.+..........+.+|.+.+|+|.+.++. |++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 34555555555555554444456667899999999988888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchH
Q 011308 128 MIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWW 207 (489)
Q Consensus 128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~W 207 (489)
.+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+..+ |
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w 162 (390)
T PRK03545 84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-W 162 (390)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-H
Confidence 999999999999999999999999999998889999999999999999999999999999999999999999988888 9
Q ss_pred HHHHHHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc
Q 011308 208 RICFWVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN 286 (489)
Q Consensus 208 r~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (489)
|+.|++.++..++..+..+ ++||+++ +++ +...+.++.++++.
T Consensus 163 ~~~f~~~~~~~~l~~~~~~~~~~~~~~-----~~~-------------------------------~~~~~~~~~~~~~~ 206 (390)
T PRK03545 163 RTTFLAIGGGALITLLLLIKLLPLLPS-----EHS-------------------------------GSLKSLPLLFRRPA 206 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCc-------------------------------chHHHHHHHHhCcH
Confidence 9999999887776654433 3565432 000 00112445677776
Q ss_pred ccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308 287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMA 362 (489)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 362 (489)
++......++...... ....+.+.++.+ .+.+... .....+++.++++++.+++.||+++|.... +..+..
T Consensus 207 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~ 281 (390)
T PRK03545 207 LVSLYLLTVVVVTAHF----TAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLL 281 (390)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHH
Confidence 6544443333332221 122333333343 5666554 445566788999999999999999876543 333333
Q ss_pred HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL 442 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 442 (489)
++...+.... .+.+.......+.+.+.. ...+.....+.+..| +.+++++|+++...++|..+||.+.|.+
T Consensus 282 ~~~~~l~~~~-------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~ 352 (390)
T PRK03545 282 VCLLLLLPAA-------NSEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQV 352 (390)
T ss_pred HHHHHHHHHh-------chHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222111 112223333444444432 233444556777767 5789999999999999999999999999
Q ss_pred HHHhccchhhHHHHHHHHHHHHHhhhccc
Q 011308 443 LEQLGPLILYTIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
.|..|++..|.+.+++.+++.++.+...+
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 353 SLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999888888877765543
No 12
>PRK12307 putative sialic acid transporter; Provisional
Probab=100.00 E-value=4.8e-37 Score=295.97 Aligned_cols=394 Identities=16% Similarity=0.211 Sum_probs=280.4
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
+.+++.+..+.++.+.++++.....+..|.+.+++|+++.+. +++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 344566778888888889999999999999999999998877 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308 127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW 206 (489)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 206 (489)
+.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..+
T Consensus 92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~- 170 (426)
T PRK12307 92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG- 170 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc
Q 011308 207 WRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN 286 (489)
Q Consensus 207 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (489)
||+.|++..+..++........||++++..++.+. .. ++.+...+.....++++++++.
T Consensus 171 w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~---------~~~~~~~~~~~~~~~~~~~~~~ 229 (426)
T PRK12307 171 WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KG---------KHSQSAWSVFSLSMKGLFNRAQ 229 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cc---------cccccchhhhhHHHHHHHhhch
Confidence 99999986544433332222345554332111000 00 0000001111234667777776
Q ss_pred ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308 287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAI 363 (489)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 363 (489)
++........... .+.....+..++|.++.+.+.+... ......++.+++.++.+++.||++||+....+.++..+
T Consensus 230 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~ 308 (426)
T PRK12307 230 FPLTLCVFIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFL 308 (426)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6644433222221 1222223445667777776766544 44556678889999999999999999988877766655
Q ss_pred HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHh-cCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 364 AMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFS-LGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL 442 (489)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 442 (489)
..+.+..... .. . ......+++.++. .+..+....++.|.+|++.||+++|+.+...++++.++|.+.|.+
T Consensus 309 ~~~~~~~~~~------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 309 FIFPLFRIPQ------DN-Y-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred HHHHHHHHcc------cc-H-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence 5443332211 11 1 1122222222221 222344456778999999999999999999999999999999999
Q ss_pred HHHhccchh-hHHHHHHHHHHHHHhhhcccCC
Q 011308 443 LEQLGPLIL-YTIFGSFCFLAVIYVKRNVMET 473 (489)
Q Consensus 443 ~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~ 473 (489)
.+..|+... +.+.+..+.++.....+..|++
T Consensus 381 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 381 GITMGLGAALTFIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred HHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 998886543 3333434444443333333443
No 13
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=100.00 E-value=6.7e-39 Score=311.01 Aligned_cols=396 Identities=14% Similarity=0.086 Sum_probs=275.3
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
.+..+..+++++++.+.++..+++..|.+.+|+|++.++. |++.+.+.+++.+++++.|+++||+|||+++..+++++
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~ 104 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS 104 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence 4566778888888889999999999999999999988877 99999999999999999999999999999999998888
Q ss_pred HHHHHHHhh-----hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 011308 129 IIGASMSAI-----TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI 203 (489)
Q Consensus 129 ~i~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~ 203 (489)
+++.++.++ ++|++.++++|+++|++.+...+...+++.||+|+++|+++++++..+.++|.++++.+..++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 887776665 689999999999999999999999999999999999999999999999999999999988766554
Q ss_pred c--chHHHHHHHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhh-HH
Q 011308 204 L--GWWRICFWVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVK-FS 279 (489)
Q Consensus 204 ~--~~Wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 279 (489)
. ++||..|.+.+++.++..+..+ +.+++|+.. +..++ ++. ..+. ... ++ ...++++...... .+
T Consensus 185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~---~~~~--~~~--~~-~~~~~~~~~~~~~~~~ 252 (467)
T PRK09556 185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEI---FGEP--ISE--ED-KETESTDMTKWQIFVE 252 (467)
T ss_pred hccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhc---ccCc--cch--hh-hccccccCcHHHHHHH
Confidence 2 2399999888877776655443 456666421 10000 000 0000 000 00 0000000001111 22
Q ss_pred hhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHH
Q 011308 280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLL 355 (489)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 355 (489)
+.++++.+|...+..++... .......+.|.++++ .|.+... ......++.+++.++.|+++||+++|+...
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~ 328 (467)
T PRK09556 253 YVLKNPVIWLLCFANIFLYI----VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALV 328 (467)
T ss_pred HHHcChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 36777777765554444333 233355666766643 5666544 444566788999999999999999888765
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHH-HHHH
Q 011308 356 GSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWV-INFF 434 (489)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~ 434 (489)
.......++.....+.. ..+.........+++... .+..........|.+|++.+|++.|+.+...++ |+++
T Consensus 329 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~ 401 (467)
T PRK09556 329 ACIALALIIFTLGVYQH------ATSEYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF 401 (467)
T ss_pred HHHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH
Confidence 54433333222222111 112222222222222211 111112224566999999999999999999997 7799
Q ss_pred HHHHHHHHHH------------HhccchhhHHHHHHHHHHHHHhhhc
Q 011308 435 VGLLFLRLLE------------QLGPLILYTIFGSFCFLAVIYVKRN 469 (489)
Q Consensus 435 ~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
+|.+.|.+.| ..||...|.+.+++++++.++.+..
T Consensus 402 ~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 402 AKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 5679999988888887776655543
No 14
>PRK11663 regulatory protein UhpC; Provisional
Probab=100.00 E-value=5.9e-38 Score=301.48 Aligned_cols=401 Identities=15% Similarity=0.117 Sum_probs=277.9
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
++......++..+...++...++..+|.+.+++|++.++. |++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~ 98 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT 98 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence 3455566677777778888888899999999999988777 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308 129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR 208 (489)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr 208 (489)
+++.+++++++|++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+.++|..+++.+++.+.+..+ ||
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~ 177 (434)
T PRK11663 99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WR 177 (434)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999998888 99
Q ss_pred HHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhH-Hhhhcccc
Q 011308 209 ICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKF-SELISPRN 286 (489)
Q Consensus 209 ~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 286 (489)
+.|++.++..++..+. .++++|+|++...+...+...+. . +...+.+..+.+.+..+ ...++++.
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-L------------ELAQQQEGAGLSRKEILTKYVLLNPY 244 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-c------------ccchhccccCCChhhhHHHHHhcChH
Confidence 9999988776655443 44578876532111000000000 0 00000000000001111 12455665
Q ss_pred ccchhhhHHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhC--CchhH-HHHHH
Q 011308 287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLG--RRVLL-LGSFL 359 (489)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~-~~~~~ 359 (489)
++......++... ....+..++|.++. +.|.+... ......++..+++++.|+++||+. +|+.. ....+
T Consensus 245 ~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~ 320 (434)
T PRK11663 245 IWLLSFSYVLVYV----VRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAA 320 (434)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHH
Confidence 5554443333332 23344456666664 45666544 455667888999999999999983 33332 22222
Q ss_pred HHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLF 439 (489)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 439 (489)
...+....+..... .+...........+. ...+..........|.+|++.++++.|+.+...++|.+++|.+.
T Consensus 321 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~ 393 (434)
T PRK11663 321 GILLSVGSLWLMPF------ASYVMQAACFFTIGF-FVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPL 393 (434)
T ss_pred HHHHHHHHHHHccc------ccHHHHHHHHHHHHH-HHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccH
Confidence 22222211111111 111111111111111 11111122234568999999999999999999999999999999
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCC
Q 011308 440 LRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGK 476 (489)
Q Consensus 440 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (489)
|.+.|..|+...|.+.+++++++.+..+...++++++
T Consensus 394 g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 430 (434)
T PRK11663 394 AKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR 430 (434)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 9999999999999999998888877666555555443
No 15
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=100.00 E-value=1.1e-37 Score=297.00 Aligned_cols=392 Identities=15% Similarity=0.085 Sum_probs=271.8
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
+.+|+.+..+++..+++++++..++...|.+.+|+|++.++. |++.+++.+++++++++.|+++||+|||+++..+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~ 81 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV 81 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence 346778888888999999999999999999999999998887 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc----
Q 011308 127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE---- 202 (489)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~---- 202 (489)
+++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|.++++.+++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred --ccchHHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcC-ChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhH
Q 011308 203 --ILGWWRICFWVATIPAAFLALF-MEFCAESPHWLFKRG-RGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKF 278 (489)
Q Consensus 203 --~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (489)
..+ ||+.|++.+++.++..++ .+++||+|+.. +. ..++.+...+..........+.+ ...++........+
T Consensus 162 ~~~~g-wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 236 (412)
T TIGR02332 162 MALKG-WQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQPE--GAFAHAAMPQRSML 236 (412)
T ss_pred CCccc-hhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhccccccccc--cccccccccHHHHH
Confidence 346 999999988887765544 45578887421 00 01111111111110000000000 00000011112234
Q ss_pred HhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc--CCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchh
Q 011308 279 SELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA--GVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVL 353 (489)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 353 (489)
++++ ++.++...+.. ++.......+..++|.++++. +.+... ......++.+++.++.|+++||+++|+.
T Consensus 237 ~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~ 311 (412)
T TIGR02332 237 REIF-TPAIMLYTLAY----FCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH 311 (412)
T ss_pred HHhc-ChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence 4444 34443332222 222234555666788888764 333222 5566678889999999999999997764
Q ss_pred -HHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHH
Q 011308 354 -LLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVIN 432 (489)
Q Consensus 354 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 432 (489)
.....+...++..+ ... . ... ...+....+...+.. ...+.......|.+|++.|++++|+.+...++|+
T Consensus 312 ~~~~~~~~~~~~~~~-~~~--~----~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~ 382 (412)
T TIGR02332 312 HTALPYLFAAAGWLL-ASA--T----DHN-LIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATGNIGS 382 (412)
T ss_pred HHHHHHHHHHHHHHH-HHh--c----CCH-HHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhhhhhh
Confidence 33333333333211 111 1 111 111111222222221 1123334455678899999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-cchhhHHHHHHH
Q 011308 433 FFVGLLFLRLLEQLG-PLILYTIFGSFC 459 (489)
Q Consensus 433 ~~~~~~~g~l~~~~g-~~~~~~~~~~~~ 459 (489)
+++|.+.|.+.|..| |...+.+.+++.
T Consensus 383 ~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 383 ALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred hhhhhhcccccccCCCCchhHHHHHHHH
Confidence 999999999999876 777777665543
No 16
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=100.00 E-value=1.7e-36 Score=287.40 Aligned_cols=375 Identities=13% Similarity=0.055 Sum_probs=272.2
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
.|.....++++.+..... ...++.+|.+++|+|+|.++. |++.+.+.+++.+++++.|+++||+|||+++..+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~ 84 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLI 84 (393)
T ss_pred HHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHH
Confidence 455555555554444333 667899999999999998887 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc-chH
Q 011308 129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL-GWW 207 (489)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~-~~W 207 (489)
+++.+++++++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.++. + |
T Consensus 85 ~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~-w 162 (393)
T PRK09705 85 AVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSET-W 162 (393)
T ss_pred HHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-H
Confidence 9999999999999999999999999999999999999999997 78999999999999999999999999888775 5 9
Q ss_pred HHHHHHhHHHHHHHHHHhhcc-cCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc
Q 011308 208 RICFWVATIPAAFLALFMEFC-AESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN 286 (489)
Q Consensus 208 r~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (489)
|+.+.+.++..++..+..+.. ++.|+ ++ ++++ ...++.++++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------------------------~~~~----~~~~~~l~~~~ 206 (393)
T PRK09705 163 YQTLAWWALPAVVALFAWWWQSAREVA-----SS---------------------------HKTT----TTPVRVVFTPR 206 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc-----cc---------------------------cCCC----cCCcccccCHh
Confidence 998877666554443333222 11111 00 0000 01123344454
Q ss_pred ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308 287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAI 363 (489)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 363 (489)
.+.......+... .+.....+.|.++.+.+.+... .....+++.++++++.+++.||+++|+....+..+..+
T Consensus 207 ~~~l~~~~~~~~~----~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~ 282 (393)
T PRK09705 207 AWTLGVYFGLING----GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLV 282 (393)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 4443333322222 3344555666666666766554 55667788999999999999999999988887776666
Q ss_pred HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 364 AMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIF-PNRIRAKAMAVCMAVHWVINFFVGLLFLRL 442 (489)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 442 (489)
+..++..... .. ... ...+.+.+.+.. .+.......+.. |++.+++..|+.+...++++.++|.+.|++
T Consensus 283 ~~~~~~~~~~------~~-~~~--~~~l~g~g~g~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l 352 (393)
T PRK09705 283 GFCGFIWLPL------QL-PVL--WAMVCGLGLGGA-FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL 352 (393)
T ss_pred HHHHHHHccc------hH-HHH--HHHHHHHhccch-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554432211 11 111 122233333322 233333444554 567899999999999999999999999999
Q ss_pred HHHhc-cchhhHHHHHHHHHHHHHhhhcccCCCCCCH
Q 011308 443 LEQLG-PLILYTIFGSFCFLAVIYVKRNVMETKGKTL 478 (489)
Q Consensus 443 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (489)
.|..| +...|.+.++++++..++.....+|++++.+
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 353 RSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred HHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 99987 6677777777777777777777888877654
No 17
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=100.00 E-value=1.4e-36 Score=290.85 Aligned_cols=377 Identities=20% Similarity=0.242 Sum_probs=277.8
Q ss_pred CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308 46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA 125 (489)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 125 (489)
.+++|..+.+.++..++++++....++..|.+.+|+|.++++. |++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV 87 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 3477888888888999999999999999999999999988777 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 126 LPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
++..++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 167 (406)
T PRK11551 88 ALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA 167 (406)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred hHHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308 206 WWRICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP 284 (489)
Q Consensus 206 ~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (489)
||+.|++.++..++..+. ..++||+|++..++++.++.+ ...+..+++
T Consensus 168 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~ 216 (406)
T PRK11551 168 -WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA------------------------------PVLRALFGE 216 (406)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh------------------------------hhHHHHhhh
Confidence 999999987765555443 445788775432211100000 000111111
Q ss_pred cc---ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHH
Q 011308 285 RN---FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSF 358 (489)
Q Consensus 285 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 358 (489)
+. .+......+.. .........+.|.++++.+.+... ......++.+++.++.|++.||+++|+.+..+.
T Consensus 217 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~ 292 (406)
T PRK11551 217 GRATATLLLWISYFFT----LIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIY 292 (406)
T ss_pred hhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11 11111111111 112334455667777777766544 555567788999999999999999999887766
Q ss_pred HHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308 359 LGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL 438 (489)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 438 (489)
....++.+++.... +.+.......+.+.+.. +..+...++..|.+|+++|+++.|+.+...++|..++|.+
T Consensus 293 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~ 363 (406)
T PRK11551 293 AGILASLAALAAAP--------SFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLL 363 (406)
T ss_pred HHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhh
Confidence 55555544433221 11222222333333222 2345566688899999999999999999999999999999
Q ss_pred HHHHHHHhc-cchhhHHHHHHHHHHHHHhhh
Q 011308 439 FLRLLEQLG-PLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 439 ~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 468 (489)
.|.+.++.+ +...+.....+.+++.++.+.
T Consensus 364 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 364 AGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999998755 444455555555555444443
No 18
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=100.00 E-value=7.7e-37 Score=284.88 Aligned_cols=353 Identities=15% Similarity=0.079 Sum_probs=248.3
Q ss_pred cccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHH
Q 011308 65 YHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGM 144 (489)
Q Consensus 65 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l 144 (489)
.....+++.+|.+++|+|++.++. |++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....+|++.+
T Consensus 5 ~~~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 5 AIWVTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred HHHHHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 344567889999999999988877 999999999999999999999999999998776655554544333334799999
Q ss_pred HHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308 145 LLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF 224 (489)
Q Consensus 145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~ 224 (489)
+++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++++.+.+..+ ||+.|++.+++.++..+.
T Consensus 83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~ 160 (368)
T TIGR00903 83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIIL 160 (368)
T ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHH
Confidence 9999999999886 45666667999999999999999999999999999999999998888 999999988877666554
Q ss_pred -hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhc
Q 011308 225 -MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLS 303 (489)
Q Consensus 225 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (489)
.+++||+|++. ++..+ . ++...+++++++++.+|...+..++...
T Consensus 161 ~~~~lp~~p~~~---~~~~~----------------------~-----~~~~~~~~~ll~~~~~~~~~~~~~~~~~---- 206 (368)
T TIGR00903 161 VLAALPALPFQA---AEGFG----------------------F-----KDAVKEFGALAGRKDLWIIGAILGFGVA---- 206 (368)
T ss_pred HHHHcCCCCCCC---CCCcc----------------------h-----HHHHHHHHHHHcChhHHHHHHHHHHHHH----
Confidence 44589887531 10000 0 0001236678888888766665555544
Q ss_pred chhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCc---hhHH-HHHHHHHHHHHHHHHHhhcccCCC
Q 011308 304 GINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRR---VLLL-GSFLGMAIAMGVQAIAATSFVSSS 379 (489)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
....+..|+|.++++.+.+.. ......+..+.+.+..++++||..|| +... ....+.++....+....
T Consensus 207 ~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~------- 278 (368)
T TIGR00903 207 LFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFEL------- 278 (368)
T ss_pred HHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcc-------
Confidence 344555677777776666543 33334445555666678888987654 2222 12222222222222111
Q ss_pred cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 011308 380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFC 459 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 459 (489)
. ....+....+.+ .+.....+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+.. +....|.++++..
T Consensus 279 ~-~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~ 354 (368)
T TIGR00903 279 N-RLALFAFIGIAG-LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILI 354 (368)
T ss_pred c-cHHHHHHHHHHH-HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence 1 111222222222 22222334566788999999999999999999999999999999988773 6667788888887
Q ss_pred HHHHHHhh
Q 011308 460 FLAVIYVK 467 (489)
Q Consensus 460 ~~~~~~~~ 467 (489)
+++.+...
T Consensus 355 ~i~~~~~~ 362 (368)
T TIGR00903 355 TIAFAIAL 362 (368)
T ss_pred HHHHHHHH
Confidence 77776654
No 19
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3e-43 Score=341.58 Aligned_cols=428 Identities=34% Similarity=0.584 Sum_probs=331.9
Q ss_pred HHHhhhhccccccccchhhhhh--hccccccc-------chHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHH
Q 011308 57 IISSFLFGYHLGVVNETLESIS--LDLGFSGS-------TMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALP 127 (489)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~-------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 127 (489)
.++.+..+++....+...+... .++..+.. +.+.+++.++..+|..+|+++.|+++||+|||+.+.++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 3455777777777666655444 22222221 22358999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh---hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308 128 MIIGASMSAITK---NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL 204 (489)
Q Consensus 128 ~~i~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 204 (489)
..+++++.++++ |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+....
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999 99999999999999999999999999999999999999999999999999999888876653322
Q ss_pred c--hHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhh
Q 011308 205 G--WWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELI 282 (489)
Q Consensus 205 ~--~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (489)
+ .||+.+++.+++.++..+...++||||+|+..++|.+++++.+++.++....+.+.++..++.++.++.+.++++++
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 245 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF 245 (451)
T ss_pred ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 2 29999999999998887778889999999999999999999888866554444333333332222222225677788
Q ss_pred cccc-ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCC-chhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308 283 SPRN-FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSD-SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360 (489)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 360 (489)
+++. .++......+..+....+.....+|.+.+++..+.+.. ......++...++.+++.++.||+|||+.++.+...
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~ 325 (451)
T PF00083_consen 246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLL 325 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7755 44555555555666566667777888888888777776 455566677778888888999999999999888887
Q ss_pred HHHHHHHHHHHhhcccCCC--cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308 361 MAIAMGVQAIAATSFVSSS--GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL 438 (489)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 438 (489)
..++.+.+.. ........ ......+....++...++.+..+..+.+..|.+|++.|+++.|+....+++++++++.+
T Consensus 326 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~ 404 (451)
T PF00083_consen 326 MAICSLILGI-IFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFL 404 (451)
T ss_pred cccccccccc-ccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7777666541 11111111 11222333444455566667778888889999999999999999999999999999999
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHhh
Q 011308 439 FLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMAL 485 (489)
Q Consensus 439 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (489)
...+.+..+....+.+.++++++..++.+++.||||+++++|+++++
T Consensus 405 ~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 405 FPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred cccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 98888887756678888888888888888999999999999998863
No 20
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=100.00 E-value=3.4e-36 Score=289.31 Aligned_cols=378 Identities=19% Similarity=0.169 Sum_probs=249.2
Q ss_pred chhhHHHHHHHHhhhhccccccccchhhhhhhcccc---cccch-HHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhh
Q 011308 48 RSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGF---SGSTM-AEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQL 123 (489)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~-~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~ 123 (489)
+++..+...+++.+++.+|...++...|.+.+|++. +..+. +.+.+.+...++..++++++|+++||+|||+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~ 98 (432)
T PRK10406 19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI 98 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 455566677788899999999999999999999863 33322 11233344455555999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHH
Q 011308 124 CALPMIIGASMSAITKNLW--------GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALF 195 (489)
Q Consensus 124 ~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~ 195 (489)
++++++++++++++++++. .++++|+++|++.|...+...+++.|++|+++|+++.++.+.+...|..+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~ 178 (432)
T PRK10406 99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL 178 (432)
T ss_pred HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764 58899999999999999999999999999999999999998888888888877
Q ss_pred hhcccc--------cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhh
Q 011308 196 VGLPAK--------EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKS 267 (489)
Q Consensus 196 ~~~~l~--------~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (489)
+...+. +..+ ||++|++.+++.++.......+||+|++..+ +
T Consensus 179 ~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~----------------------------~- 228 (432)
T PRK10406 179 VVVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQETR----------------------------A- 228 (432)
T ss_pred HHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHHh----------------------------h-
Confidence 654443 2456 9999999888877665555557776542100 0
Q ss_pred hhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHH
Q 011308 268 ERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMI 343 (489)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~ 343 (489)
.+ +..+++++++++..+...+...+. ....+.....++|.++.+ .+.+... ......+...++.++.|+
T Consensus 229 -~~---~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~ 301 (432)
T PRK10406 229 -LK---EAGSLKGLWRNRRAFIMVLGFTAA---GSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGA 301 (432)
T ss_pred -hc---ccccHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 012355666666554333322221 111233345566666644 5666544 333445566778888999
Q ss_pred HHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH
Q 011308 344 LMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV 423 (489)
Q Consensus 344 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 423 (489)
++||++||+.+.....+..+........... ..+....+....+.....+. ..+....+.+|.+|++.|+++.|+
T Consensus 302 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~ 376 (432)
T PRK10406 302 LSDKIGRRTSMLCFGSLAALFTVPILSALQN----VSSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGL 376 (432)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhH
Confidence 9999999987766554433322211111110 01111111111111111111 123445678899999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHhhh
Q 011308 424 CMAVHWV-INFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 424 ~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 468 (489)
.+...++ .+...|.+.+. .+..| +...++..+++.+++.+..++
T Consensus 377 ~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 377 SYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9988775 34457777774 45556 444555555566665555443
No 21
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=100.00 E-value=3.4e-36 Score=293.63 Aligned_cols=382 Identities=13% Similarity=0.036 Sum_probs=275.7
Q ss_pred chhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHH
Q 011308 48 RSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALP 127 (489)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 127 (489)
++|..+..++++.++..++.++++.++|.+.+|+|.+.++. +|+.+.|.+++.++++++|+++||+|||++++.+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~ 80 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL 80 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45678889999999999999999999999999999988887 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC-CccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308 128 MIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS-PAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW 206 (489)
Q Consensus 128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 206 (489)
+.++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++.+.+..+
T Consensus 81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g- 159 (495)
T PRK14995 81 FGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY- 159 (495)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Confidence 9999999999999999999999999999998888888887765 67899999999999999999999999999999998
Q ss_pred HHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHH---------HHHhC-CCCchHH-------------HH
Q 011308 207 WRICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAEL---------ERLFG-GLHVKYS-------------MA 262 (489)
Q Consensus 207 Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~-------------~~ 262 (489)
|||.|++.....++..++ .+++||+++. ++++.+...... ..... ....... ..
T Consensus 160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 237 (495)
T PRK14995 160 WGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLG 237 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence 999999987766665544 3446776531 111111111000 00000 0000000 00
Q ss_pred HHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHH
Q 011308 263 ELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGS 338 (489)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~ 338 (489)
.....+. +.+.+.-..+++|++.+....+..++.... .....++.+.+++. .|.++.. ......++..++.
T Consensus 238 ~f~~~e~-~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~ 312 (495)
T PRK14995 238 LFIRTQL-AASRPMIDMRLFTHRIILSGVVMAMTAMIT----LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSG 312 (495)
T ss_pred HHHHHHh-cCCCCCcCHHHhCCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000111 111222234677777766554444433332 23334455555544 4555444 5566678888999
Q ss_pred HHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHH
Q 011308 339 IIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRA 418 (489)
Q Consensus 339 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 418 (489)
++.|++.||+++|+.+..+.++..++..++..... ..+.+.......+.+.+.+....+. .....+..|+++++
T Consensus 313 ~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~g 386 (495)
T PRK14995 313 PIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-----STQQWQAWGLMALLGFSAASALLAS-TSAIMAAAPPEKAA 386 (495)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCHHhcc
Confidence 99999999999999888887777666655443221 1222333444555565555443333 34566778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 419 KAMAVCMAVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 419 ~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (489)
.+.++.++..++|+.+|+.+.|.+.++
T Consensus 387 ~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 387 AAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988763
No 22
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=100.00 E-value=3.4e-35 Score=281.74 Aligned_cols=387 Identities=19% Similarity=0.208 Sum_probs=270.0
Q ss_pred CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308 46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA 125 (489)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 125 (489)
.+++|+.+..++++.+.++++....++..|.+++++|.+.++. |++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3566788888999999999999999999999999999998888 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 126 LPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876543
Q ss_pred -hHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308 206 -WWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP 284 (489)
Q Consensus 206 -~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (489)
.||+.|++.+++.++..+....+||++++..++++.++..+..++..+..... +...++.....++. .
T Consensus 165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--~ 233 (405)
T TIGR00891 165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI---------ANIVMTLAAAMVQS--A 233 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh---------hhhhhhhhHHhhhh--h
Confidence 39999998776666655555667887654332222111111111111000000 00000000011111 1
Q ss_pred ccccchhhhH-HHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHH
Q 011308 285 RNFGVVFIGS-TLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFL 359 (489)
Q Consensus 285 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 359 (489)
+..+...... ....+... .......+.+.++. +.+.+... .....+++.+++.++.+++.||++||+.+..+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~ 312 (405)
T TIGR00891 234 GKRWPTFVYLVVLVLFANL-YSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLL 312 (405)
T ss_pred hhhhHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHH
Confidence 1112111111 11111111 11222333444443 35665544 4556678889999999999999999998877665
Q ss_pred HHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLF 439 (489)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 439 (489)
...+........ ..+.+.......+.+.. ..+..+....++.|.+|++.|++++|+.+...+++..++|.+.
T Consensus 313 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~ 384 (405)
T TIGR00891 313 AGQLLIIPVFAI-------GANVAVLGLGLFFQQML-VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIG 384 (405)
T ss_pred HHHHHHHHHHHh-------CCchHHHHHHHHHHHHH-HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHH
Confidence 543322221111 11112222222222222 2333445566889999999999999999999999999999999
Q ss_pred HHHHHHhc-cchhhHH
Q 011308 440 LRLLEQLG-PLILYTI 454 (489)
Q Consensus 440 g~l~~~~g-~~~~~~~ 454 (489)
|.+.|..| |...+..
T Consensus 385 g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 385 ALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHhccccchhHHh
Confidence 99999988 6554443
No 23
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=100.00 E-value=9.7e-36 Score=282.72 Aligned_cols=369 Identities=18% Similarity=0.150 Sum_probs=269.0
Q ss_pred hhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308 50 LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI 129 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 129 (489)
|..+....+..+..+. ....++..|.+.+++|++.++. |++.+++.+++.+++++.|+++||+|||+++..+.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~ 79 (377)
T TIGR00890 3 WYVLVGTVIMCFTSGY-VYTWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYG 79 (377)
T ss_pred EEEeHHHHHHHHHhhH-HhhhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHH
Confidence 3334444444344333 5567889999999999988877 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308 130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI 209 (489)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~ 209 (489)
++.+++++++|++.++++|++.|++.+...+.....+.+++| ++|+++.++...+.++|..+++++.+.+.+..+ ||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~ 157 (377)
T TIGR00890 80 LGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPA 157 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHH
Confidence 999999999999999999999999999888888888999986 579999999999999998887767666666677 999
Q ss_pred HHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccccc
Q 011308 210 CFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFG 288 (489)
Q Consensus 210 ~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (489)
.|++.++..++..+..++ ++|+++. +.++ +++.++.....++.++++.++
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~ 208 (377)
T TIGR00890 158 AFIYMGIIFLLVIVLGAFLIGYPPGQ---LIKT--------------------------NIEVSVKDYTVWEMLRTPQFW 208 (377)
T ss_pred HHHHHHHHHHHHHHHHHHheecCchh---cccc--------------------------CcccchhhhhHHHHHcCccHH
Confidence 999998887776655443 5544321 0000 000001112345567777666
Q ss_pred chhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 011308 289 VVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAM 365 (489)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 365 (489)
......++..+. ......+.+.+.++.+.+... ......++.++++++.+++.||++||+.+..+.....++.
T Consensus 209 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 209 VLYLSFFLNAVS----GLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHhHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 554443333221 222233344445556655433 4556677888999999999999999998888877777766
Q ss_pred HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 366 GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (489)
+.+.+... ......+....+.+.+.+. ..+....+..|.+|+++|+++.|+.+...++|..++|.+.|.+.+.
T Consensus 285 ~~~~~~~~------~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 357 (377)
T TIGR00890 285 AAMLFIPM------LNDVLFLATVALVFFTWGG-TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE 357 (377)
T ss_pred HHHHHccc------chhHHHHHHHHHHHHHhcc-chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55543321 1111122223333333332 2234455788999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHH
Q 011308 446 LGPLILYTIFGSFCFLAV 463 (489)
Q Consensus 446 ~g~~~~~~~~~~~~~~~~ 463 (489)
.||...|.+.+++++++.
T Consensus 358 ~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 358 IGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hchhhHHHHHHHHHHHhc
Confidence 999989888887776654
No 24
>PRK09952 shikimate transporter; Provisional
Probab=100.00 E-value=5.5e-35 Score=280.87 Aligned_cols=387 Identities=17% Similarity=0.154 Sum_probs=258.5
Q ss_pred CcchhhHHHHHHHHhhhhccccccccchhhh-hhhcc--cccccchHHHHHH-----HHHHHHHHHHHHHHHHhhcccCc
Q 011308 46 WSRSLPHVLVAIISSFLFGYHLGVVNETLES-ISLDL--GFSGSTMAEGLVV-----STCLGGAFVGSMFSGWIADGIGR 117 (489)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~g~~~-----s~~~~~~~~~~~~~g~l~dr~Gr 117 (489)
..++++.+...+++.+++++|...++...|. +.+++ +.++. . +++. ++.+++..+++++.|+++||+||
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Gr 93 (438)
T PRK09952 17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-M--GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGR 93 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-H--HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence 3444567778888999999999988887774 45555 55544 2 5553 34556677999999999999999
Q ss_pred hhHhhhhhHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHH
Q 011308 118 RRAFQLCALPMIIGASMSAITKNLW--------GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLG 189 (489)
Q Consensus 118 r~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G 189 (489)
|+++..+.++++++++++++++|+. .++++|+++|++.|...+....++.|++|+++|++..+..+.+..+|
T Consensus 94 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G 173 (438)
T PRK09952 94 KRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG 173 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999999999999987 58889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccc--------ccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHH
Q 011308 190 ILVALFVGLPAKE--------ILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSM 261 (489)
Q Consensus 190 ~~i~~~~~~~l~~--------~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (489)
.+++..+...+.. ..+ ||++|++.+++.++........||+|++...+++.++
T Consensus 174 ~~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------------------ 234 (438)
T PRK09952 174 LLLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------------------ 234 (438)
T ss_pred HHHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc------------------
Confidence 9998777665542 456 9999999887765554444457888765322211000
Q ss_pred HHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHH
Q 011308 262 AELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSG 337 (489)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~ 337 (489)
.+ ++....+.+++++..+....... ....+ .......+.+.+.. ..+.+... .....++..+++
T Consensus 235 --------~~-~~~~~~~~l~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~ 302 (438)
T PRK09952 235 --------AK-KRIPVIEALLRHPGAFLKIIALR--LCELL-TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLT 302 (438)
T ss_pred --------cc-ccCCHHHHHHHchHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 00 00011122344444333222111 11111 22233344454443 35555543 334456667788
Q ss_pred HHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhH
Q 011308 338 SIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIR 417 (489)
Q Consensus 338 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 417 (489)
.++.|+++||++||+.+..+.++..++...+...... .......+....+.+.+.+.. .+..++++.|.+|++.|
T Consensus 303 ~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r 377 (438)
T PRK09952 303 IPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA----QSIFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYR 377 (438)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchh
Confidence 8899999999999998877766554443322221111 111222222223323333222 23456688999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc--cchhhHHHHHHHHHHHHHhhhcccC
Q 011308 418 AKAMAVCMAVHW-VINFFVGLLFLRLLEQLG--PLILYTIFGSFCFLAVIYVKRNVME 472 (489)
Q Consensus 418 ~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (489)
+++.|+.+.... +++.++|.+.+++.+..+ |...+...+++++++.+..+. .++
T Consensus 378 ~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~ 434 (438)
T PRK09952 378 YSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL-MKD 434 (438)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-ccc
Confidence 999999766654 899999999999988653 666677677777666655543 344
No 25
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=100.00 E-value=1.1e-34 Score=271.30 Aligned_cols=373 Identities=15% Similarity=0.081 Sum_probs=271.2
Q ss_pred hhHHHHHHHHhhhhccccccccchhhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 50 LPHVLVAIISSFLFGYHLGVVNETLESISL-DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
++.+....++.++......+.++..+.+.+ |+|+|.+|. +++.+++.+++.++.++.|++.||+|.|+++.++.+++
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~ 110 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL 110 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 467777778888888888899999998876 899998887 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh-----hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc--
Q 011308 129 IIGASMSAIT-----KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK-- 201 (489)
Q Consensus 129 ~i~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-- 201 (489)
++.+++.+++ +|++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+.
T Consensus 111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~ 189 (462)
T PRK15034 111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV 189 (462)
T ss_pred HHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999987 8999999999999998 7788999999999999999999999997666666665555443322
Q ss_pred ----------------cccchHHHHHHHhHHHHHHHHHHhhcc-cCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHH
Q 011308 202 ----------------EILGWWRICFWVATIPAAFLALFMEFC-AESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAEL 264 (489)
Q Consensus 202 ----------------~~~~~Wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (489)
+..+ ||..+++..++.++..++.++. ++.++
T Consensus 190 ~l~~~~G~~~~~~~~g~~~~-~~~~~~~~~~~~iv~~i~~~~~~~~~~~------------------------------- 237 (462)
T PRK15034 190 PVFAFLGVNGVPQADGSVMS-LANAAWIWVPLLAIATIAAWSGMNDIAS------------------------------- 237 (462)
T ss_pred HHHHHhccccccccccchHH-HHHHHHHHHHHHHHHHHHHHHhCCCccc-------------------------------
Confidence 1233 8888888888777666555443 33221
Q ss_pred hhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHH
Q 011308 265 SKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIA 341 (489)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 341 (489)
.+.......+.+|++..|...+.+++.+. .+..+.+++|.+.++ .++... ...+..+...+.++++
T Consensus 238 ------~~~~~~~~~~vlk~~~~Wllslly~~tFG----~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplg 306 (462)
T PRK15034 238 ------SRASIADQLPVLQRLHLWLLSLLYLATFG----SFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVG 306 (462)
T ss_pred ------cccCHHHHHHHhCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhh
Confidence 01122345568888988877666655444 344444455555444 121111 2334456778889999
Q ss_pred HHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCCh-------
Q 011308 342 MILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPN------- 414 (489)
Q Consensus 342 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------- 414 (489)
|+++||+|+++++..+.+...++......... .....+.+.....++......+.+..++. -++.+.+|+
T Consensus 307 G~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp--~~~~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~ 383 (462)
T PRK15034 307 GAISDKFGGVRVTLINFIFMAIFSALLFLTLP--GTGSGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVK 383 (462)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhccc
Confidence 99999999999998888766665543322221 11112333344444444455555554443 356666663
Q ss_pred --------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHhhhccc
Q 011308 415 --------------RIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 415 --------------~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
++.|.+.|+....+.+|+++.|.+.|...+..| +...|+.+.+..+++.++.+.+..
T Consensus 384 ~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 384 MKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred ccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 268899999999999999999999999988876 666788888888888777765543
No 26
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=4.2e-35 Score=252.82 Aligned_cols=416 Identities=19% Similarity=0.261 Sum_probs=312.4
Q ss_pred CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308 46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA 125 (489)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 125 (489)
.+..|.......++.....+-.-..+-+.|...+.+|.+..+. .++......|..+++..+|..+|++|||+.+.+..
T Consensus 73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~ 150 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF 150 (528)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence 4556666666666666666655556667788888888665555 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 126 LPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
+..++...+.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...++.......|
T Consensus 151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g 228 (528)
T KOG0253|consen 151 LVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG 228 (528)
T ss_pred HHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999 889999999999999999887666 8899999999999999999999
Q ss_pred hHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHH--------HHHhhh--------hh
Q 011308 206 WWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSM--------AELSKS--------ER 269 (489)
Q Consensus 206 ~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--------~~ 269 (489)
|||.......+..+.+++.+++||+||++..++++.++.+.++++.+.+..+.+. ++.+++ .+
T Consensus 229 -wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~ 307 (528)
T KOG0253|consen 229 -WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSS 307 (528)
T ss_pred -HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhc
Confidence 9999999998888888888999999999999999999998888886655432211 000000 11
Q ss_pred ccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcC--------------------CCCCc---h
Q 011308 270 GDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAG--------------------VPSDS---G 326 (489)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~---~ 326 (489)
..++...+..+++.++..+..++.... ++.+...+.........+++... .+... -
T Consensus 308 a~ke~rg~~~nLlsp~lrkttlllw~i-wfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd 386 (528)
T KOG0253|consen 308 AAKEVRGGTTNLLSPKLRKTTLLLWRI-WFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD 386 (528)
T ss_pred cccccccchHhhcChHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence 122334455666665444444433333 33222223333333333322111 00000 2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhh
Q 011308 327 NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSL 406 (489)
Q Consensus 327 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (489)
..+..+...+|.++.+++.||+|||+.+...++++++..+.+....... .+....+.+-.+..+.....++
T Consensus 387 llitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn---------~~tvllf~arafisg~fqvaYv 457 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN---------AYTVLLFTARAFISGAFQVAYV 457 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc---------hhHHHHHHHHHHHhchheEEEE
Confidence 4556788999999999999999999999999999888877766554322 2222223333333444557788
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCH
Q 011308 407 LLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTL 478 (489)
Q Consensus 407 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (489)
|..|++|+..|+++.|....++.+|+++.|.+. +........+..+++++++++.+...++.-|+|+|++
T Consensus 458 YtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 458 YTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred ecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 999999999999999999999999999999997 4444455667788889999988888888889998764
No 27
>TIGR00893 2A0114 d-galactonate transporter.
Probab=100.00 E-value=1.6e-35 Score=283.30 Aligned_cols=386 Identities=16% Similarity=0.130 Sum_probs=272.1
Q ss_pred hhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhh
Q 011308 61 FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKN 140 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~ 140 (489)
+...++...++...|.+.+++|.+..+. |++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence 4556677788889999999999988887 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHH
Q 011308 141 LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAF 220 (489)
Q Consensus 141 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~ 220 (489)
++.++++|+++|++.+...+....++.|++|+++|++++++.+....+|.++++.+++.+.+..+ ||+.|++.++..++
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~ 160 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGII 160 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888 99999998887776
Q ss_pred HHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHh
Q 011308 221 LALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFAL 299 (489)
Q Consensus 221 ~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (489)
..+..+ +.||+|+.. +...++.++...+.. .+..+.+++++......++.++++.++...+..++...
T Consensus 161 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (399)
T TIGR00893 161 WGVLWLKFIPDPPQKA--KWLTEEEKYIVVGGL---------LAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI 229 (399)
T ss_pred HHHHhhheecCCCCcc--ccCCHHHHhhcchhh---------ccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence 655544 456654310 111111111000000 00000111112233456677777776655555444443
Q ss_pred hhhcchhHHHHhHHHHHHh-cCCCCC---chhHHHHHHHHHHHHHHHHHHhhhCCchhH-HHHHHHHHHHHHHHHHHhhc
Q 011308 300 QQLSGINAVFYFSSTVFKN-AGVPSD---SGNICVGIANLSGSIIAMILMDKLGRRVLL-LGSFLGMAIAMGVQAIAATS 374 (489)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 374 (489)
.......+.+.++.+ .+.+.. .......++.+++.++.+++.||++||+.. ........++.+........
T Consensus 230 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (399)
T TIGR00893 230 ----GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA 305 (399)
T ss_pred ----HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 333444455555443 454433 355666788889999999999999988621 11111111111111111100
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhH
Q 011308 375 FVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYT 453 (489)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~ 453 (489)
.. .....+ ........ ...+.+..+....+..|..|++.|+++.|+.+...++|..++|.+.|.+.+..| +...+.
T Consensus 306 ~~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~ 382 (399)
T TIGR00893 306 TN-YVNIPY-AALALVAL-GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALM 382 (399)
T ss_pred hc-cchhHH-HHHHHHHH-HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHH
Confidence 00 011111 12222222 222223456777889999999999999999999999999999999999999988 888888
Q ss_pred HHHHHHHHHHHHhh
Q 011308 454 IFGSFCFLAVIYVK 467 (489)
Q Consensus 454 ~~~~~~~~~~~~~~ 467 (489)
+.+++++++.+..+
T Consensus 383 ~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 383 VVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777766554
No 28
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=100.00 E-value=1.5e-34 Score=276.13 Aligned_cols=364 Identities=18% Similarity=0.165 Sum_probs=262.9
Q ss_pred hHHHHHHHHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308 51 PHVLVAIISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI 129 (489)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 129 (489)
+.+..+++..++..++..+..+.+|. +.+++|.+..+. |++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~ 92 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA 92 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence 34556677778888888888889986 578899988877 999999999999999999999999999999999999888
Q ss_pred HHHHHHhhh--------hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 011308 130 IGASMSAIT--------KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK 201 (489)
Q Consensus 130 i~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~ 201 (489)
++.+.+.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 93 LSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred HHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 877766543 257788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhh
Q 011308 202 EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSEL 281 (489)
Q Consensus 202 ~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (489)
+..+ ||+.+++.++..++..+.....|++++ ++++ +.++++.
T Consensus 173 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------------------------~~~~~~~ 214 (399)
T PRK05122 173 HWGG-LAGLGLLIMLLALLGLLLARPRPAVPP---VKGE----------------------------------RLPFRRV 214 (399)
T ss_pred Hccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC---CCcc----------------------------------chhHHHH
Confidence 8888 999988766665444333322333211 0000 0011111
Q ss_pred hccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308 282 ISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPS-DSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360 (489)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 360 (489)
+++ .+.......+..+ .......+.+.++.+.+.+. .......+++.+++.++.+++.||+++|+.+..+..+
T Consensus 215 ~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 288 (399)
T PRK05122 215 LGR--VWPYGMGLALASI----GFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLV 288 (399)
T ss_pred HHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111 1111111111111 12233344454455545432 2244566778889999999999999999988877777
Q ss_pred HHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFL 440 (489)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 440 (489)
..++..++.... +.+..+....+.+.+.+.. .+.......|..|+++|+++.|+++...++|..+++.+.|
T Consensus 289 ~~~~~~~~~~~~--------~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g 359 (399)
T PRK05122 289 EILGLLLLWLAP--------SPWMALIGAALTGFGFSLV-FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAG 359 (399)
T ss_pred HHHHHHHHHHhc--------cHHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665554432 1222333444455544432 2343445668889999999999999999999999999999
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHHhhhc
Q 011308 441 RLLEQLGPLILYTIFGSFCFLAVIYVKRN 469 (489)
Q Consensus 441 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
.+.+..|++..+.+.+++++++.++.+..
T Consensus 360 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 360 LVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888888877666543
No 29
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=100.00 E-value=6.8e-34 Score=269.36 Aligned_cols=368 Identities=17% Similarity=0.153 Sum_probs=263.8
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
|+.|..+..+.+..+..........+.+|.+.+|+|+++++. |+..+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~ 93 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAV 93 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence 334555555555555555555556667899999999998888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308 127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW 206 (489)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 206 (489)
+.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|.+++.+.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g- 172 (394)
T PRK10213 94 LLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG- 172 (394)
T ss_pred HHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccc
Q 011308 207 WRICFWVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPR 285 (489)
Q Consensus 207 Wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (489)
||+.|++.++..++..+... ..||+++. + ++.....++.++++
T Consensus 173 w~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-------------------------------~~~~~~~~~~l~~~ 216 (394)
T PRK10213 173 WRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-------------------------------SHQKQNTFRLLQRP 216 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-------------------------------ccchhHHHHHhcCH
Confidence 99999998876665544433 35654310 0 00011234566667
Q ss_pred cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308 286 NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMA 362 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 362 (489)
.++...+..++..... .....+..|.+.++.|.+... .....+++.+++.++.+++.||.+++...........
T Consensus 217 ~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~ 293 (394)
T PRK10213 217 GVMAGMIAIFMSFAGQ---FAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAV 293 (394)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 6665544333333221 122223345566666777654 4555667888999999999999544333333322222
Q ss_pred HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL 442 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 442 (489)
..+++.... .+.+.......+.+.+++.. .+...+++.+..| ++++...+......++|..+||.+.|.+
T Consensus 294 ~~~~l~~~~--------~~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l 363 (394)
T PRK10213 294 SALVLTLWG--------SDKIVATGVAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYA 363 (394)
T ss_pred HHHHHHHHh--------hhHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 11233344445555555433 3444446677777 4577888888888899999999999999
Q ss_pred HHHhccchhhHHHHHHHHHHHHHh
Q 011308 443 LEQLGPLILYTIFGSFCFLAVIYV 466 (489)
Q Consensus 443 ~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
.|..|+...+...+++.++..+.+
T Consensus 364 ~~~~g~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK10213 364 LDNIGLTSPLMLSGTLMLLTALLV 387 (394)
T ss_pred HhccChhhHHHHHHHHHHHHHHHH
Confidence 999998877777766665555444
No 30
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=100.00 E-value=1.3e-34 Score=279.88 Aligned_cols=395 Identities=13% Similarity=0.069 Sum_probs=260.8
Q ss_pred chhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHH
Q 011308 48 RSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALP 127 (489)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 127 (489)
++|..+...++.......++..++...|.+.++ |++.++. |++.+++.+++.+++++.|+++||+|||+++..+.++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~ 102 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 102 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence 345555555566666666666677788988888 9888877 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh----hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHH-HHHHhhccccc
Q 011308 128 MIIGASMSAITK----NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGIL-VALFVGLPAKE 202 (489)
Q Consensus 128 ~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~~~~~l~~ 202 (489)
.+++.+++++++ +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+++++..+..
T Consensus 103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 182 (452)
T PRK11273 103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW 182 (452)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999888753 7888899999999999988888888899999999999999999999998864 45554433333
Q ss_pred ccchHHHHHHHhHHHHHHHHH-HhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhh-HHh
Q 011308 203 ILGWWRICFWVATIPAAFLAL-FMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVK-FSE 280 (489)
Q Consensus 203 ~~~~Wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 280 (489)
..+ ||+.|++.+++.++..+ ..+++||+|+....+ +.++.++ +. + ++..++++++.+.... .+.
T Consensus 183 ~~g-w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~---~~------~---~~~~~~~~~~~~~~~~~~~~ 248 (452)
T PRK11273 183 FND-WHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYKN---DY------P---DDYNEKHEQELTAKQIFMQY 248 (452)
T ss_pred hcc-HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhh---cc------c---cccccccCCCccHHHHHHHH
Confidence 346 99999998877666544 455578877531111 1111000 00 0 0000000000011111 223
Q ss_pred hhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhC--CchhH
Q 011308 281 LISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLG--RRVLL 354 (489)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~ 354 (489)
+++++.+|...+..++.... ......+.|.++++ .+.+... ......++.+++.++.|+++||++ ||...
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~----~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~ 324 (452)
T PRK11273 249 VLPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT 324 (452)
T ss_pred HHcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchH
Confidence 56777776655555444432 23445566777665 4555443 445566788889999999999994 44332
Q ss_pred H-HHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHH
Q 011308 355 L-GSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINF 433 (489)
Q Consensus 355 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 433 (489)
. ....+..++.+++.+.. ..+.+.........+.... +.......+..|.+|++.+|++.|+.+...++|+.
T Consensus 325 ~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 397 (452)
T PRK11273 325 GVFFMTLVTIATIVYWLNP------AGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 397 (452)
T ss_pred HHHHHHHHHHHHHHHHHhc------ccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHH
Confidence 2 22222222222221111 1111112222222222211 11122234567899999999999999999999876
Q ss_pred H-HHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcc
Q 011308 434 F-VGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNV 470 (489)
Q Consensus 434 ~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
+ +|.+.|.+.|+.|+...|.+.+++++++.+......
T Consensus 398 ~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 435 (452)
T PRK11273 398 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 435 (452)
T ss_pred HhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 5 799999999999999999988888888766665433
No 31
>PRK15075 citrate-proton symporter; Provisional
Probab=100.00 E-value=8.7e-34 Score=272.83 Aligned_cols=359 Identities=18% Similarity=0.262 Sum_probs=238.2
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHH-----HHHHHHHHHHHHHhhcccCchhHhhh
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTC-----LGGAFVGSMFSGWIADGIGRRRAFQL 123 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~-----~~~~~~~~~~~g~l~dr~Grr~~l~~ 123 (489)
|++....++++.+++++|+..+++..|.+.+|++.++.+.. ++..+.. .++..+++++.|+++||+|||++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 34467888899999999999999999999999998877651 2323322 22334789999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhHHH--------HHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHH
Q 011308 124 CALPMIIGASMSAITKNLWG--------MLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALF 195 (489)
Q Consensus 124 ~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~ 195 (489)
+.+++++++++++++++++. ++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.
T Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~ 171 (434)
T PRK15075 92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL 171 (434)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999874 6889999999999999999999999999999999999999888888877777
Q ss_pred hhcccc--------cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhh
Q 011308 196 VGLPAK--------EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKS 267 (489)
Q Consensus 196 ~~~~l~--------~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (489)
+++.+. +..+ ||++|++..+...+........||++++..+++
T Consensus 172 ~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~---------------------------- 222 (434)
T PRK15075 172 LGYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH---------------------------- 222 (434)
T ss_pred HHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh----------------------------
Confidence 766652 3566 999999855443222222222333322110000
Q ss_pred hhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHH
Q 011308 268 ERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMI 343 (489)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~ 343 (489)
+ .+....+++..+++..+ .......+.....+.....+.|.++++ .|.+... ......++.+++.++.|+
T Consensus 223 -~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 296 (434)
T PRK15075 223 -R--PSMREIFRSLAANWRIV---LAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGA 296 (434)
T ss_pred -c--cccccHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00001112222222111 111111222222345566777887765 5776554 344566778899999999
Q ss_pred HHhhhCCchhHHHHHHHHHHHHH-HHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHH
Q 011308 344 LMDKLGRRVLLLGSFLGMAIAMG-VQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMA 422 (489)
Q Consensus 344 l~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 422 (489)
++||++||+....+..+..+... .+..... ..+.........+.+.+++. ..+....+..|.+|++.|+++.|
T Consensus 297 l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g 370 (434)
T PRK15075 297 LSDRIGRRPVLIAFTVLAILTAYPALSWLVA-----APSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFS 370 (434)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchhee
Confidence 99999999887765444322211 1111111 11111111212222233332 22344457889999999999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhccc
Q 011308 423 VCMAVHWV-INFFVGLLFLRLLEQLGPL 449 (489)
Q Consensus 423 ~~~~~~~~-g~~~~~~~~g~l~~~~g~~ 449 (489)
+.+.+... ++.++|.+.|.+.|..|+.
T Consensus 371 ~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 371 LAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 97666554 5888999999999988853
No 32
>PRK03893 putative sialic acid transporter; Provisional
Probab=100.00 E-value=7.2e-34 Score=279.37 Aligned_cols=405 Identities=18% Similarity=0.210 Sum_probs=273.2
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
+++|+.+..++++.+++.++....++.+|.+.+++|++.++. +++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 345667778888889999999999999999999999988877 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308 127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW 206 (489)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 206 (489)
+.+++.++.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~- 172 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG- 172 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHH-------h-hhhhccchhhh--
Q 011308 207 WRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAEL-------S-KSERGDEADAV-- 276 (489)
Q Consensus 207 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~-- 276 (489)
||+.|++.++..++..+....+||++++..++++.++.++..+............... . ...........
T Consensus 173 w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (496)
T PRK03893 173 WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVA 252 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence 9999988655554444444456776654322221111111111000000000000000 0 00000000000
Q ss_pred --------hHHh-hh-ccccccchhhhHHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHH
Q 011308 277 --------KFSE-LI-SPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAM 342 (489)
Q Consensus 277 --------~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g 342 (489)
.+.. .. .++..+..........+..+........++|.+++ +.|.+... ......++.+++.++.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g 332 (496)
T PRK03893 253 VLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG 332 (496)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 00111111111111111111111234456677774 56666544 55566788889999999
Q ss_pred HHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHH
Q 011308 343 ILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMA 422 (489)
Q Consensus 343 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 422 (489)
++.||+++|+.+..+..+..+..+...... ....+ ......+.....+.+..+....++.|.+|++.|++++|
T Consensus 333 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 405 (496)
T PRK03893 333 FLGDWLGTRKAYVCSLLISQLLIIPVFAIG------GANVW-VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLG 405 (496)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHhhcc------ccHHH-HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccc
Confidence 999999999887776655544433322211 11111 11122222222333334455667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 011308 423 VCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFL 461 (489)
Q Consensus 423 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 461 (489)
+.+....+|+.++|.+.|.+.+..|+...+...++++.+
T Consensus 406 ~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~ 444 (496)
T PRK03893 406 FTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF 444 (496)
T ss_pred hhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999988777665544433
No 33
>PRK10091 MFS transport protein AraJ; Provisional
Probab=100.00 E-value=2.3e-34 Score=272.44 Aligned_cols=368 Identities=14% Similarity=0.090 Sum_probs=262.1
Q ss_pred HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308 53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 132 (489)
+..+.+..+..........+.+|.+++|+|.+.++. |++.+.+.+++.++++++|+++||+|||+++..+.++.+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 82 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN 82 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence 455666777778888888899999999999988887 999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHH
Q 011308 133 SMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFW 212 (489)
Q Consensus 133 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~ 212 (489)
+++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+ ||+.|+
T Consensus 83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~ 161 (382)
T PRK10091 83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFL 161 (382)
T ss_pred HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHH
Confidence 9999999999999999999999999888888999999999999999999999999999999999999988888 999999
Q ss_pred HhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchh
Q 011308 213 VATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVF 291 (489)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (489)
+.++..++..+. ..++||.++ +.+. + .+.. .+.++++..+...
T Consensus 162 ~~~~~~~~~~~~~~~~lp~~~~----~~~~-~------------------------------~~~~-~~~~~~~~~~~~~ 205 (382)
T PRK10091 162 LIAVFNIAVLASIYFWVPDIRD----EAKG-G------------------------------LREQ-FHFLRSPAPWLIF 205 (382)
T ss_pred HHHHHHHHHHHHHHHhCCCCCc----cccc-C------------------------------HHHH-HHHhcChHHHHHH
Confidence 988876665544 344676532 0000 0 0000 1233444443322
Q ss_pred hhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHH
Q 011308 292 IGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQ 368 (489)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 368 (489)
....+.. .....+..+..+.+.+..|.+... .....+++.++++++.+++.||+++|+.+..+..+..++.+++
T Consensus 206 ~~~~~~~---~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~ 282 (382)
T PRK10091 206 AATMFGN---AGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML 282 (382)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence 2222111 111122222233333345666554 4556678889999999999999999998887777766665544
Q ss_pred HHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Q 011308 369 AIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ-LG 447 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g 447 (489)
...... .+.......+.+.+......+.......+..|++.++.+ ..+...++|..+||.+.|.+.|. .+
T Consensus 283 ~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~ 353 (382)
T PRK10091 283 FFFGGM-------KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLA 353 (382)
T ss_pred HHHHhh-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccC
Confidence 332211 112222333333333222222333344455555555554 34677899999999999999996 57
Q ss_pred cchhhHHHHHHHHHHHHHhhhccc
Q 011308 448 PLILYTIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
|...+.+.++++++.........+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 354 YNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhh
Confidence 888888887776666555444333
No 34
>PRK10489 enterobactin exporter EntS; Provisional
Probab=100.00 E-value=3.1e-35 Score=282.07 Aligned_cols=383 Identities=16% Similarity=0.096 Sum_probs=281.1
Q ss_pred HhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhh-
Q 011308 59 SSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI- 137 (489)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~- 137 (489)
..++..+......+.+|.+.++++.+..+. |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~ 102 (417)
T PRK10489 25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQV--GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN 102 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH
Confidence 344555566677888899999988766655 99999999999999999999999999999999998888877665542
Q ss_pred ----hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308 138 ----TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV 213 (489)
Q Consensus 138 ----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~ 213 (489)
.++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+..+|..+|+.+++.+.+..+ |++.|++
T Consensus 103 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~ 181 (417)
T PRK10489 103 AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGL 181 (417)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHH
Confidence 56788999999999999888888889999999999999999999999999999999999999988878 9999998
Q ss_pred hHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308 214 ATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG 293 (489)
Q Consensus 214 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (489)
.++..++..+..+.+||+++. +.+++ +..++....++..++++.++...+.
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~~---~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (417)
T PRK10489 182 AAAGTFITLLPLLRLPALPPP---PQPRE--------------------------HPLRSLLAGFRFLLASPVVGGIALL 232 (417)
T ss_pred HHHHHHHHHHHHHhCCCCCCC---Ccccc--------------------------cchHHHHHHHHHHHcChHHHHHHHH
Confidence 887777666666667765421 00000 0000111234455666665544433
Q ss_pred HHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 011308 294 STLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQA 369 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 369 (489)
.++... ......+.|.+.++ .+.+... .....+++.+++.++.+++.||.++++.+..+..+..++.+++.
T Consensus 233 ~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 307 (417)
T PRK10489 233 GGLLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG 307 (417)
T ss_pred HHHHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH
Confidence 332221 12234455666665 5665544 44556678889999999999997777777777666666555443
Q ss_pred HHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308 370 IAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL 449 (489)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 449 (489)
+.. +.+.......+++.+.+. ..+...+++.|..|++.||+++|+.+...++|..++|.+.|.+.+..|+.
T Consensus 308 ~~~--------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~ 378 (417)
T PRK10489 308 LMP--------MWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPV 378 (417)
T ss_pred ccc--------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh
Confidence 321 122233333334433322 22344567889999999999999999999999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHhhCC
Q 011308 450 ILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLP 487 (489)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (489)
..+...+++.++..++.....++.|+++++|++++..+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (417)
T PRK10489 379 ASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASD 416 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCC
Confidence 88888888777777777777788888888888776554
No 35
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=100.00 E-value=1e-34 Score=282.37 Aligned_cols=396 Identities=15% Similarity=0.091 Sum_probs=274.1
Q ss_pred CcchhhHHHHHHHHhhhhccccccccchhhhhhh----------------------cccccccchHHHHHHHHHHHHHHH
Q 011308 46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISL----------------------DLGFSGSTMAEGLVVSTCLGGAFV 103 (489)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~~~~~~~~g~~~s~~~~~~~~ 103 (489)
.+.+|.+..+++++....+.++..++.+.+.+.+ |++++..+. |++.+.+.+++.+
T Consensus 14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~ 91 (465)
T TIGR00894 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQII 91 (465)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHHH
Confidence 4566778888888888889999999888888876 677777766 9999999999999
Q ss_pred HHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh--hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHH
Q 011308 104 GSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT--KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSS 181 (489)
Q Consensus 104 ~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 181 (489)
++++.|+++||+|||+++..+.++++++++++.++ .+++.+++.|+++|++.+...+....++.|++|+++|++++++
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999999999999999999998887554 5688899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccc-chHHHHHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchH
Q 011308 182 TQIAACLGILVALFVGLPAKEIL-GWWRICFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKY 259 (489)
Q Consensus 182 ~~~~~~~G~~i~~~~~~~l~~~~-~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (489)
...+..+|.++++++++.+.+.. + ||+.|++.++..++..+.+++ .+|+|+.. ++.++++ ++...+
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~-~~~i~~--------- 239 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIH-PCISKFE-KKYINS--------- 239 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccC-CCCCHHH-HHHHHh---------
Confidence 99999999999999999998874 7 999999999888777666554 56666411 1111111 111100
Q ss_pred HHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHH
Q 011308 260 SMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANL 335 (489)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~ 335 (489)
..++++.+.+....++++++++..+...+..+.... ....+..|+|.++++ .+.+... ...+..++..
T Consensus 240 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~ 311 (465)
T TIGR00894 240 ----SLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFW----LYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAW 311 (465)
T ss_pred ----hcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHH
Confidence 000001111122357788888877766555444443 445556677766654 4555433 4455678888
Q ss_pred HHHHHHHHHHhhhCCchhHH---HHHHHHHHHH---HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhc
Q 011308 336 SGSIIAMILMDKLGRRVLLL---GSFLGMAIAM---GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLS 409 (489)
Q Consensus 336 ~~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (489)
++.++.|+++||+++|+... .......++. .+..+..... .......+..+.+.+.+.+ +..+.......
T Consensus 312 i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~ 387 (465)
T TIGR00894 312 LCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL---SAAFYLTIIILTLANAVSS-GPLAGVLINSL 387 (465)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHhh-hhhhhhhhchh
Confidence 99999999999976442210 0111111111 1111111100 1111222222222222222 22223333455
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhhHHHHHHHHHHHHHhhh
Q 011308 410 EIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL---GPLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 410 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
|..| +.+|.+.|+.+..+.+++.++|.+.|.+.+.. +|...|.+.+++.+++.++...
T Consensus 388 ~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 388 DLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 7766 58999999999999999999999999887653 3777888888888777665543
No 36
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=100.00 E-value=4.5e-34 Score=273.12 Aligned_cols=366 Identities=16% Similarity=0.096 Sum_probs=267.8
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
++.+.....+.+..+...+....+.+.+|.+.+++|.+.++. ++..+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 86 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 455666777777888888888889999999999999988777 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308 127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW 206 (489)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 206 (489)
+.+++.+++.++++++.+++.|+++|++.+...+.....+.|++|+++|.+..++......+|..++|.+++.+.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~- 165 (406)
T PRK15402 87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP- 165 (406)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 9999999999999999999999999999998888899999999999999999999988888999999999999988888
Q ss_pred HHHHHHHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccc
Q 011308 207 WRICFWVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPR 285 (489)
Q Consensus 207 Wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (489)
||+.|++.++..++..+.. ...||+++. ++++ .+.++...+++++++++
T Consensus 166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------------------~~~~~~~~~~~~~~~~~ 215 (406)
T PRK15402 166 WRGMFVLFAALAALSFFGLWRAMPETAGR---VGEK---------------------------LSLKELGRDYKLVLKNR 215 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCcc---cccc---------------------------ccHHHHHHHHHHHHcCc
Confidence 9999999888777665543 346665421 0000 00011123456677777
Q ss_pred cccchhhhHHHHHhhhhcchhHHHHhHHHHH-HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308 286 NFGVVFIGSTLFALQQLSGINAVFYFSSTVF-KNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM 361 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 361 (489)
.++...+...+..... .....+.|.++ +..+.+... ......++.+++.++.+++.||+++|+.+..+.++.
T Consensus 216 ~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~ 291 (406)
T PRK15402 216 RFVAGALALGLVSLPL----LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM 291 (406)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7665544443333221 12222334443 335555443 233445677889999999999999999888887777
Q ss_pred HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 362 AIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR 441 (489)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 441 (489)
.++..++....... ..+.+..+....+++.+.+.... ......... +++++|++.++++....++..+|+.+.+.
T Consensus 292 ~~g~~~~~~~~~~~---~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~ 366 (406)
T PRK15402 292 VAGLLLAALATVIS---SHAYLWLTAGLSLYAFGIGLANA-GLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKH 366 (406)
T ss_pred HHHHHHHHHHHHcc---cccHHHHHHHHHHHHHHHHHHhh-hHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77666665543211 12223334445555555544332 222233333 44789999999999999999999999999
Q ss_pred HHHHhccchhhHH
Q 011308 442 LLEQLGPLILYTI 454 (489)
Q Consensus 442 l~~~~g~~~~~~~ 454 (489)
+.+..++......
T Consensus 367 l~~~~~~~~~~~~ 379 (406)
T PRK15402 367 AYLGGGNGLFNLF 379 (406)
T ss_pred cccCCchHHHHHH
Confidence 8887775443333
No 37
>PRK12382 putative transporter; Provisional
Probab=100.00 E-value=2.3e-33 Score=267.12 Aligned_cols=362 Identities=17% Similarity=0.141 Sum_probs=255.8
Q ss_pred HHHHHHHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308 53 VLVAIISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG 131 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 131 (489)
+..+.++.++..+..++..|.+|. +.+|+|.|.++. |++.+.+.+++.++++++|+++||+||||++..+.+...++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA 94 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence 334444556666667777888886 578999988887 99999999999999999999999999999999998887776
Q ss_pred HHHHh---h-----hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 011308 132 ASMSA---I-----TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI 203 (489)
Q Consensus 132 ~~~~~---~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~ 203 (489)
.+... + .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (392)
T PRK12382 95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH 174 (392)
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54332 1 358899999999999999988898999999999999999999999999999999999999999888
Q ss_pred cchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhc
Q 011308 204 LGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELIS 283 (489)
Q Consensus 204 ~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (489)
.+ ||+.+.+..+..++........||.++ +++ +++ +.++..+
T Consensus 175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----------------------------~~~----~~~~~~~ 216 (392)
T PRK12382 175 FG-FAALALTTMVLPLLAWAFNGTVRKVPA----HAG-----------------------------ERP----SLWSVVG 216 (392)
T ss_pred cC-hHHHHHHHHHHHHHHHHHHHhccCCCC----Ccc-----------------------------cCc----hHHHHHH
Confidence 88 998877655544333322222233211 000 000 0111111
Q ss_pred cccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc-hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308 284 PRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS-GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMA 362 (489)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 362 (489)
..+...+...+... .......+.+.++++.+.+... .....+++.+++.++.|++.||+++|+.+..+..+..
T Consensus 217 --~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 290 (392)
T PRK12382 217 --LIWKPGLGLALQGV----GFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVET 290 (392)
T ss_pred --HHHHhHHHHHHHHH----HHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHH
Confidence 00110111111111 1223334445555555554322 3444566778899999999999999998888877777
Q ss_pred HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL 442 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 442 (489)
++.+++.+.. +.+.......+.+.+.+. ..+.......|..|+++||++.|+.+...++|..++|.+.|.+
T Consensus 291 ~~~~~~~~~~--------~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l 361 (392)
T PRK12382 291 VGLLLLWLAP--------TAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGML 361 (392)
T ss_pred HHHHHHHHcc--------cHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665544321 122233334444444432 2344445667888999999999999999999999999999999
Q ss_pred HHHhccchhhHHHHHHHHHHHHHhhhc
Q 011308 443 LEQLGPLILYTIFGSFCFLAVIYVKRN 469 (489)
Q Consensus 443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
.++.||...|.+.+++.+++.++.+..
T Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 362 ATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999988888877766543
No 38
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-35 Score=265.35 Aligned_cols=374 Identities=17% Similarity=0.158 Sum_probs=276.5
Q ss_pred CCcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhh
Q 011308 45 PWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLC 124 (489)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~ 124 (489)
..+..++.+.++++.+.++.++++.+...++.+++.+|++++.. |++.+.+.+.+.+++|+.|+++|||+||+++.+|
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG 104 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG 104 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence 34556778889999999999999999999999999999999888 9999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308 125 ALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL 204 (489)
Q Consensus 125 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 204 (489)
.++|.++.++++++..||+++++|.+.|+|.+...|+++.+++|.+|.++|++++++++.+..+|..+|.+++..+.+..
T Consensus 105 ~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 105 IFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhc
Q 011308 205 GWWRICFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELIS 283 (489)
Q Consensus 205 ~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (489)
++|||.|+..+++++++.++.++ .+|+++ +..++..+ ..+..++......+.+.+.+
T Consensus 185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~-----------------~~~~~~~~ts~~kDl~~l~~ 242 (493)
T KOG1330|consen 185 FWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDG-----------------ENKMVKPFTSVWKDLKVLAK 242 (493)
T ss_pred cceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccccc-----------------CCcCCCCccchHHHHHHHHc
Confidence 88999999999999998877655 555432 11111000 00001122223344555666
Q ss_pred cccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCc----hhHHH
Q 011308 284 PRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRR----VLLLG 356 (489)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~----~~~~~ 356 (489)
++.+....+......+...+...+.+.+.+......+.+... ...+...++.+|.+.+|.++||+.++ ....+
T Consensus 243 ~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~ 322 (493)
T KOG1330|consen 243 IKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRA 322 (493)
T ss_pred cCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhH
Confidence 677777666766666666666667777777776666544443 56667788899999999999994321 11122
Q ss_pred HHHHHH----HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHH
Q 011308 357 SFLGMA----IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVIN 432 (489)
Q Consensus 357 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~ 432 (489)
..+..+ .+...+.+.+.. ...+.+ ..+.+++++............-+..|++|+++|.++.++...+..+.+
T Consensus 323 ~q~~~~~g~~~s~~~L~~~~~~---~~~s~~-~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fg 398 (493)
T KOG1330|consen 323 SQLSAALGAPLSIPFLFLFPAF---TSSSMI-FGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFG 398 (493)
T ss_pred HHHHHhhhhhHHHHHHHHHHhh---hhHHHH-HHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhc
Confidence 111111 111111111111 111112 222333333333333333444467899999999999999998877655
Q ss_pred -HHHHHHHHHHHHHh
Q 011308 433 -FFVGLLFLRLLEQL 446 (489)
Q Consensus 433 -~~~~~~~g~l~~~~ 446 (489)
+-+|.+.|.+.|+.
T Consensus 399 d~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 399 DAASPYIVGILSDKL 413 (493)
T ss_pred cCCCcceehhHHHHh
Confidence 55555999998874
No 39
>PRK10504 putative transporter; Provisional
Probab=100.00 E-value=4.9e-34 Score=278.41 Aligned_cols=381 Identities=18% Similarity=0.177 Sum_probs=268.2
Q ss_pred HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308 52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 131 (489)
.+..++++.++..++...+++.+|.+.+++|.+..+. +++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 88 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG 88 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 3456667778888888888999999999999988777 89999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHH
Q 011308 132 ASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICF 211 (489)
Q Consensus 132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f 211 (489)
.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++.....++|..++|.+++.+.+..+ ||+.|
T Consensus 89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f 167 (471)
T PRK10504 89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIF 167 (471)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888 99999
Q ss_pred HHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHH-------H--HhCCCCch-HH--HH-----------HHhhh
Q 011308 212 WVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELE-------R--LFGGLHVK-YS--MA-----------ELSKS 267 (489)
Q Consensus 212 ~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~-~~--~~-----------~~~~~ 267 (489)
++......+..+.... .|+.+. ++.|.+....... . ..+..... .. .. ....+
T Consensus 168 ~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (471)
T PRK10504 168 LINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH 244 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9987766655544433 444331 1112221111000 0 00110000 00 00 00001
Q ss_pred hhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHH
Q 011308 268 ERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMI 343 (489)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~ 343 (489)
++..+++..+ .++++++.++..+...++.... ......+.|.+++. .+.+... ......++.+++.++.++
T Consensus 245 ~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 319 (471)
T PRK10504 245 ARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIG----SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQ 319 (471)
T ss_pred HhcCCCCccC-HHHhcccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111122 3477888877666555554443 23334445555543 4554433 444455666777788999
Q ss_pred HHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH
Q 011308 344 LMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV 423 (489)
Q Consensus 344 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 423 (489)
+.||+++|+.+..+..+..+...++.+... ..+.+.......+.+.+.+.... ....+..+..|++.++.++|+
T Consensus 320 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~ 393 (471)
T PRK10504 320 VVNRFGYRRVLVATTLGLALVSLLFMLVAL-----LGWYYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSL 393 (471)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHhccc-----cccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHH
Confidence 999999999988887777666555443221 11122222223333344433333 344567788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308 424 CMAVHWVINFFVGLLFLRLLEQLGPL 449 (489)
Q Consensus 424 ~~~~~~~g~~~~~~~~g~l~~~~g~~ 449 (489)
.++...+|..+|+.+.|.+.+..|+.
T Consensus 394 ~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 394 LSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999998887653
No 40
>PRK03633 putative MFS family transporter protein; Provisional
Probab=100.00 E-value=6.7e-33 Score=262.46 Aligned_cols=359 Identities=14% Similarity=0.164 Sum_probs=261.8
Q ss_pred HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308 52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 131 (489)
.+..+.++.++........++.+|.+.+++|.+.++. |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~ 84 (381)
T PRK03633 7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG 84 (381)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667888888999999999999999999987777 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHH
Q 011308 132 ASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICF 211 (489)
Q Consensus 132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f 211 (489)
.+++++++|++.++++|+++|++.+...+.....+.+..++++|+++++.++.+.++|..+|+.+++.+.+... |...+
T Consensus 85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~ 163 (381)
T PRK03633 85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPW 163 (381)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHH
Confidence 99999999999999999999999999888888888899999999999999999999999999999999877543 23322
Q ss_pred HHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccch
Q 011308 212 WVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVV 290 (489)
Q Consensus 212 ~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (489)
. .+..........+ ..+|+++ + + ++..+.++.++++.++..
T Consensus 164 ~-~~~~~~~~~~~~~~~~~~~~~--------------------------------~--~---~~~~~~~~~~~~~~~~~~ 205 (381)
T PRK03633 164 V-TGLVLAAILPLLFTRILNQQA--------------------------------E--N---HDSTSIWPMLKLRQARLG 205 (381)
T ss_pred H-HHHHHHHHHHHHHhcccCCCC--------------------------------C--C---CCCCCHHHHHHhcchHHH
Confidence 2 2222211111111 1121100 0 0 001123445666665533
Q ss_pred hhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH
Q 011308 291 FIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGV 367 (489)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 367 (489)
....+.... .......++|.+.++.+.+... ......++.+++++..+++.||+++|+.+..+.....++.+.
T Consensus 206 ~~~~~~~~~----~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~ 281 (381)
T PRK03633 206 VNGCIISGI----VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIA 281 (381)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 322222222 1223334566667666766544 344556778899999999999999999887777666665443
Q ss_pred HHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308 368 QAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 447 (489)
.. .. ........+++.+. ....|.....+.|..|+++++...+..+...++|..++|.+.|.+.|+.|
T Consensus 282 ~~--~~---------~~~~~~~~l~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g 349 (381)
T PRK03633 282 ML--SQ---------AAMAPALFILGAAG-FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS 349 (381)
T ss_pred Hh--hh---------HHHHHHHHHHHHHH-HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 32 10 00112222333222 23346666677888888888888899999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHhh
Q 011308 448 PLILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~ 467 (489)
+...|.+.+++.++..+..+
T Consensus 350 ~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 350 DNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 99899888888776655544
No 41
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=100.00 E-value=3.9e-34 Score=275.92 Aligned_cols=393 Identities=15% Similarity=0.096 Sum_probs=263.4
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
.++|.++..+.+...........++..+|.+.+++|.+.++. +++.+.+.++..++.++.|+++||+|||++++.+.+
T Consensus 15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 92 (455)
T TIGR00892 15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGL 92 (455)
T ss_pred CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHH
Confidence 345666666666665555555667888999999999988888 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHH-HHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 127 PMIIGASMSAITKNLWGMLL-GRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
+.++++++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+.+..+
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g 171 (455)
T TIGR00892 93 LASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG 171 (455)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998875 5799999998877777888899995 789999999999999999999999999998888
Q ss_pred hHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccc
Q 011308 206 WWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPR 285 (489)
Q Consensus 206 ~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (489)
||+.|++.+++.++..+..+++.+.++.. +..+.+..+ .. ...... ++.......++..+....++++++
T Consensus 172 -wr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~---~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 241 (455)
T TIGR00892 172 -WRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKSKE---GL-PPDGST---KKLSKKSTAEKINRFLDFSLFTHR 241 (455)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccccc---cC-CCCCcc---ccccccchhhhhhhhcchHHhcCc
Confidence 99999999887776555444433221100 000000000 00 000000 000000000000011112466777
Q ss_pred cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhh--CCchhHHHHH--
Q 011308 286 NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKL--GRRVLLLGSF-- 358 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~-- 358 (489)
.++......++..+. ......+++.+.++.+.+... ...+.+++.++++++.+++.||. ++|+......
T Consensus 242 ~~~~~~~~~~l~~~~----~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 317 (455)
T TIGR00892 242 GFLVYLSGNVIMFLG----FFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFAL 317 (455)
T ss_pred hHHHHHHHHHHHHHH----ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHH
Confidence 776555544444332 223334555566666666554 44456677788888999999974 3333333222
Q ss_pred HHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308 359 LGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL 438 (489)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 438 (489)
+..+++.++.... .+.+..+....+.+.+.+. ..+.....+.|.+|++++++++|+++...++|.+++|.+
T Consensus 318 ~~~~l~~ll~~~~--------~~~~~~~i~~~~~G~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i 388 (455)
T TIGR00892 318 LFNGLTHLLCALA--------GDYTGLVIYCIFFGLSFGS-VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL 388 (455)
T ss_pred HHHHHHHHHHHHh--------chHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc
Confidence 2222222222111 1223333344444444432 234555677888999999999999999999999999999
Q ss_pred HHHHHHHhc-cchhhHHHHHHHHHHHHH
Q 011308 439 FLRLLEQLG-PLILYTIFGSFCFLAVIY 465 (489)
Q Consensus 439 ~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 465 (489)
.|.+.+..| |...|.+.+++.+++.+.
T Consensus 389 ~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 389 AGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred eeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 999999875 888888877766665543
No 42
>PRK03699 putative transporter; Provisional
Probab=100.00 E-value=8.9e-34 Score=269.54 Aligned_cols=368 Identities=12% Similarity=0.069 Sum_probs=263.2
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
+++.....++..++.+......++.+|.+.+++|++.++. +++.+.+.+++.+++++.|++.||+|||+++..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4455667777888888888889999999999999988877 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc-ccchH
Q 011308 129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE-ILGWW 207 (489)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~-~~~~W 207 (489)
+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+.. ..+ |
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w 161 (394)
T PRK03699 83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-W 161 (394)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H
Confidence 99999999999999999999999999998888899999999999999999999988889999999988877654 456 9
Q ss_pred HHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccc
Q 011308 208 RICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNF 287 (489)
Q Consensus 208 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (489)
|+.|.+.+++.++..+..++ .+.|+. +++++ + ++++. .++.+ ++.+
T Consensus 162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~------------------------~--~~~~~----~~~~~-~~~~ 207 (394)
T PRK03699 162 YWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP------------------------K--ADKPV----AKEKW-GIGV 207 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc------------------------c--ccCcc----ccccC-ChHH
Confidence 99999888777665544332 222210 00000 0 00000 00001 1222
Q ss_pred cchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308 288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAI 363 (489)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 363 (489)
+...+..++... ....+..+.|.++++ .+.+... ......++..+++++.++++||+++|+.+.....+..+
T Consensus 208 ~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 208 LFLAIAALLYIL----AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALV 283 (394)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence 222222222222 233445667777744 5766544 44556678899999999999999999887766655554
Q ss_pred HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 364 AMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (489)
...++.... +.........+.+.+.+ +..+....+..|..| +.+++..|......++|..++|.+.|.+.
T Consensus 284 ~~~~~~~~~--------~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~ 353 (394)
T PRK03699 284 LMYLFVNTD--------DPSHLLYAILGLGFFSS-AIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIV 353 (394)
T ss_pred HHHHHHHcC--------CchHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 443332211 11122222333333222 223344445566666 44677889999999999999999999999
Q ss_pred HHhccchhhHHHHHHHHHHHHHhh
Q 011308 444 EQLGPLILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 444 ~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
+..|+...+++.+++++++.+...
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 354 AHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHhCchhhhhhhHHHHHHHHHHHH
Confidence 999999888888887777755443
No 43
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=100.00 E-value=6.5e-34 Score=275.74 Aligned_cols=380 Identities=14% Similarity=0.090 Sum_probs=244.7
Q ss_pred hhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308 50 LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI 129 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 129 (489)
++.+...+...+..........+.+|.+.+|+|++.++. +++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~ 112 (476)
T PLN00028 35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA 112 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 344445555556666666667888999999999988877 899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc----c---
Q 011308 130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK----E--- 202 (489)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~----~--- 202 (489)
++.++++++++++.++++|+++|++.+... ....++.|++|+++|++++++.+...++|..+++.+.+.+. +
T Consensus 113 ~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 191 (476)
T PLN00028 113 PAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA 191 (476)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999987654 45678899999999999999998777777776665554332 1
Q ss_pred --ccchHHHHHHHhHHHHHHHHHHhhcccC-ChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHH
Q 011308 203 --ILGWWRICFWVATIPAAFLALFMEFCAE-SPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFS 279 (489)
Q Consensus 203 --~~~~Wr~~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (489)
..+ ||+.|++.+++.++..+..+++++ .|+ ++.++.++ +.+.++.+....++
T Consensus 192 ~~~~g-Wr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~~-------------------~~~~~~~~~~~~~~ 246 (476)
T PLN00028 192 PSFTA-WRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELKK-------------------SGTMPKDSFSKVLR 246 (476)
T ss_pred cchhh-hHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHHh-------------------cCccccccHHHHHH
Confidence 235 999999999888777666555443 332 11000000 00000111123455
Q ss_pred hhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchh--
Q 011308 280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVL-- 353 (489)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~-- 353 (489)
+.++++..|...+..+..... ......+.|.++.+ .|.+... ...+.+++.++++++.|+++||++||+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~ 322 (476)
T PLN00028 247 YGVTNYRTWILALTYGYSFGV----ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR 322 (476)
T ss_pred HHHcCchhHHHHHHHHHHHHH----HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc
Confidence 667777766554443332221 12233344555433 4666544 5556678889999999999999986521
Q ss_pred --HHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHH
Q 011308 354 --LLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVI 431 (489)
Q Consensus 354 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 431 (489)
.........+..+....... ..+.......+++++.+...+. +..+.+..+..| +.+|++.|+.+...++|
T Consensus 323 ~r~~~~~~~~~l~~i~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg 395 (476)
T PLN00028 323 GRLWALWIVQTLGGVFCIWLGR-----ANSLGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTGAGGNVG 395 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhhccccHH
Confidence 11111111111111111111 1112222223333333332222 233445666655 68999999998887777
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhc
Q 011308 432 NFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRN 469 (489)
Q Consensus 432 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
+.++|.+.+ ..+..+|...|.+.+++.+++.++.++.
T Consensus 396 ~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 396 AVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 777776654 1122357788888888877777666544
No 44
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=8.6e-33 Score=272.35 Aligned_cols=427 Identities=21% Similarity=0.199 Sum_probs=297.9
Q ss_pred CCCCCCCCcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 011308 39 KDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR 118 (489)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr 118 (489)
.++.+++.++++......+.............++..+ .+.+..+.... .+..+++++|..+|++++|+++||+|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~c~~~~~~--~~~~s~~~~G~~vG~~i~g~lsD~~GRk 148 (521)
T KOG0255|consen 73 ANPLNWPSWKKWLLVIVICLDGWVYDYGSSVYSIVSE--WNLVCDSSTLV--ALGQSLFFLGVLVGSLIFGPLSDRFGRK 148 (521)
T ss_pred CCccccccccccccccccccceeEecCCCCcccccch--hceeeCcHhHH--HHHHHHHHHHHHHHHhhheehHhhcccH
Confidence 3344444444443333333333333333333333333 34444444444 7899999999999999999999999999
Q ss_pred hHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhc
Q 011308 119 RAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGL 198 (489)
Q Consensus 119 ~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~ 198 (489)
++++.++++..++.++.++++|++.+++.|+++|++.++.......++.|++++++|+.+..+ ......+..+++..++
T Consensus 149 ~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a 227 (521)
T KOG0255|consen 149 PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAA 227 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 6666667777777777
Q ss_pred ccccccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCC----CchHHHHHH-h-h-hhhcc
Q 011308 199 PAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGL----HVKYSMAEL-S-K-SERGD 271 (489)
Q Consensus 199 ~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~-~-~~~~~ 271 (489)
++.. + ||+.+++..++.++.++.+++.||+|+|+..+++.+++.+.+++..+.+ ......... . + .....
T Consensus 228 ~~~~--~-Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~ 304 (521)
T KOG0255|consen 228 YITR--D-WRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLF 304 (521)
T ss_pred HHHh--h-HHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhc
Confidence 7776 4 9999999999998887776667899999999999999998888875432 111111111 1 1 11111
Q ss_pred chhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCc
Q 011308 272 EADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRR 351 (489)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~ 351 (489)
.++...+.++++.+.++...+...+.++ .+....+-++......|.+........+.....+....+...|+.|||
T Consensus 305 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~----~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~ 380 (521)
T KOG0255|consen 305 TEPKISFLDLFRTPRLRYRTLYLLFIWF----VFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRR 380 (521)
T ss_pred cCCCCchhhhhcCHHHHHHHHHHHHHHH----HHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcH
Confidence 1223457777777754444333333332 122222223333444555555566666777888888889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHH
Q 011308 352 VLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVI 431 (489)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 431 (489)
.....+..+..++++...+....... +.......+..++.+.+.. ..+.+..|++|+..|..+.+..+....++
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~ 454 (521)
T KOG0255|consen 381 PPLFLSLFLAGIGLLLFGWLPDDLGG-----WLHWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLG 454 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888877543210 1122222222222333333 33668999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHh
Q 011308 432 NFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMA 484 (489)
Q Consensus 432 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (489)
++++|.+.-.... ......+..++..+.+..++...+.||++++.+.+..++
T Consensus 455 ~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~ 506 (521)
T KOG0255|consen 455 SILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLD 506 (521)
T ss_pred HHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHH
Confidence 9999998644333 333333444566777777777678999998887555443
No 45
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-35 Score=260.25 Aligned_cols=432 Identities=22% Similarity=0.285 Sum_probs=308.0
Q ss_pred CcchhhHHHHHHHHhhhhccccccccchhhhhhhcc-ccc------ccchHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 011308 46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDL-GFS------GSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR 118 (489)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~------~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr 118 (489)
.++....+.+..++.+.+.++...++.+.|.+...+ |-+ ++.. .+.+..+..+|..+||++.|+++||+|||
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i-~~~Vn~~A~vGti~GQl~FG~lgD~~GRK 114 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGV-LALVNAAALVGTIFGQLFFGWLGDKFGRK 114 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 456677788888999999999999999988776654 222 1222 37889999999999999999999999999
Q ss_pred hHhhhhhHHHHHHHHHHhhhh-------hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHH
Q 011308 119 RAFQLCALPMIIGASMSAITK-------NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGIL 191 (489)
Q Consensus 119 ~~l~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~ 191 (489)
+++...++++.+++++++++. -.+++...|++.|+|.|+-+|...+..+|...+++||...+...+..++|..
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 999999999999999888753 2567888999999999999999999999999999999988877777777776
Q ss_pred HHHHhhccccc----cc----------chHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCCh-HHHHHHHHHHhCCCC
Q 011308 192 VALFVGLPAKE----IL----------GWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRG-AEAEAELERLFGGLH 256 (489)
Q Consensus 192 i~~~~~~~l~~----~~----------~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~ 256 (489)
.|.+++..+.. .. +-||..|.+.+++.++.....+..||++++.....++ +.+. .+..+...
T Consensus 195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~ 271 (538)
T KOG0252|consen 195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLS 271 (538)
T ss_pred hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hccccccc
Confidence 66665543321 11 1299999999999988888888899999876333322 1111 11111111
Q ss_pred chHHHHHHhhhh-hccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc--h-------
Q 011308 257 VKYSMAELSKSE-RGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS--G------- 326 (489)
Q Consensus 257 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------- 326 (489)
...+.++..+.. ...++....+...+..+. -..++.....++..-..++....+...+++..+..+.. .
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~h-g~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA 350 (538)
T KOG0252|consen 272 VDIEAESTAESDVPPPSNSFGLFSRLFLRWH-GKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVA 350 (538)
T ss_pred cccchhhccccCCCCcccccchHHHHHHHHH-HHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHH
Confidence 111111110000 111111112333333332 23344555555555555666777788888876665544 1
Q ss_pred --hH-HHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcc
Q 011308 327 --NI-CVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPV 403 (489)
Q Consensus 327 --~~-~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (489)
.. +...+.++|..+...++|++|||+..+.+++++.+..+.++...... . +....++...+..++..++....
T Consensus 351 ~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~---~-~~~Gf~v~y~l~~ff~NFGPn~t 426 (538)
T KOG0252|consen 351 EGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL---E-NTIGFVVLYSLTFFFGNFGPNAT 426 (538)
T ss_pred HHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc---c-ccCceeehHHHHHHHHhcCCCce
Confidence 11 11223334666677789999999999999999999888877765531 1 22223333444455555677777
Q ss_pred hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccchhhHHHHHHHHHHHHHhhhcccCCCCCCH
Q 011308 404 PSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE-----QLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTL 478 (489)
Q Consensus 404 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (489)
...+.+|.+|.+.|+++.|+....+..|++++...+.++.+ ..|...++++++++++++.++.+ +.||++++++
T Consensus 427 tfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~l 505 (538)
T KOG0252|consen 427 TFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKSL 505 (538)
T ss_pred eEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-EeecccccCH
Confidence 78889999999999999999999999999999999999998 77889999999999998877665 5679999999
Q ss_pred HHHHHhhCC
Q 011308 479 QEIEMALLP 487 (489)
Q Consensus 479 ~~~~~~~~~ 487 (489)
+|++++.+.
T Consensus 506 eei~~e~~~ 514 (538)
T KOG0252|consen 506 EEISNEEES 514 (538)
T ss_pred HHhcChhhc
Confidence 998765443
No 46
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=100.00 E-value=7.9e-34 Score=278.61 Aligned_cols=380 Identities=17% Similarity=0.151 Sum_probs=273.4
Q ss_pred HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308 52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 131 (489)
.+..++++.++..++....++.+|.+.+++|.+.++. +++.+.+.++..++.++.|+++||+|||+++..+.++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 80 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 4566777888889999999999999999999988877 99999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHH
Q 011308 132 ASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICF 211 (489)
Q Consensus 132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f 211 (489)
++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++++.+..+ ||+.|
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f 159 (485)
T TIGR00711 81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIF 159 (485)
T ss_pred HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888 99999
Q ss_pred HHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHH--------H-H-HhCCCCc---hHHHH-----------HHhh
Q 011308 212 WVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAEL--------E-R-LFGGLHV---KYSMA-----------ELSK 266 (489)
Q Consensus 212 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~--------~-~-~~~~~~~---~~~~~-----------~~~~ 266 (489)
++.+++.++..+.. ++.||+++. ++++.+...... . . ..+.... ..... ....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV 237 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99887776665543 345664321 111111111000 0 0 0011000 00000 0000
Q ss_pred hhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHH
Q 011308 267 SERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAM 342 (489)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g 342 (489)
.+.. ++++....++++++.++...+..++..+.. ....++.|.++++ .+.+... ......++.+++.++.|
T Consensus 238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 312 (485)
T TIGR00711 238 WELT-DDNPLVDLRLFKYRNFTIGCVYMSLLGLGL----YGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAG 312 (485)
T ss_pred HHHc-CCCCccCHHHHcCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 111122235677777766655555444433 3333455555544 4555543 45556778889999999
Q ss_pred HHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHH
Q 011308 343 ILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMA 422 (489)
Q Consensus 343 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 422 (489)
++.||++||+.+..+..+..++...+.+... ...+.+.......+.+.+.+....+... ...+..|+++++++.|
T Consensus 313 ~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~g~~~~~~~~~~-~~~~~~~~~~~g~~~~ 387 (485)
T TIGR00711 313 RMGDKIDPRKLVTIGLILYAVGFYWRAFTFT----PDTPFLAIALPQFIRGFGMGCFFMPLTT-IALSGLPPHKIARGSS 387 (485)
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHhHHHH
Confidence 9999999999988887777766655542211 1122233333444555555443333433 4556779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 011308 423 VCMAVHWVINFFVGLLFLRLLEQL 446 (489)
Q Consensus 423 ~~~~~~~~g~~~~~~~~g~l~~~~ 446 (489)
+.+...++|+.+|+.+.+.+.++.
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 47
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=100.00 E-value=2.1e-33 Score=270.54 Aligned_cols=402 Identities=14% Similarity=0.081 Sum_probs=267.4
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
++..+....+.....+.++..+....|.+++ +|.+.++. |++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~ 101 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS 101 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence 4555666666777777777777777887776 58888877 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh----hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc-c
Q 011308 129 IIGASMSAIT----KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE-I 203 (489)
Q Consensus 129 ~i~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~-~ 203 (489)
+++.++.++. ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++++.+..+|..+++.+.+...+ .
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 181 (438)
T TIGR00712 102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF 181 (438)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence 9998887764 4677888999999999999989889999999999999999999999999999998877665443 4
Q ss_pred cchHHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhh
Q 011308 204 LGWWRICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELI 282 (489)
Q Consensus 204 ~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (489)
.+ ||+.|++.++..++..+. .+++||+|+....+ +.++.++ +.. . ... ++.+.+.+.+....+.++
T Consensus 182 ~~-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~-~-~~~--~~~~~~~~~~~~~~~~~~ 248 (438)
T TIGR00712 182 ND-WHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEEYRN-------DYP-D-DYN--EKAEQELTAKEIFMQYVL 248 (438)
T ss_pred hh-hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchhccc-------ccc-c-ccc--cccccccchHHHHHHHHc
Confidence 56 999999988887765544 45578876531100 0000000 000 0 000 000000001111123466
Q ss_pred ccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHH
Q 011308 283 SPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSF 358 (489)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 358 (489)
+++.++...+..++.... ......+.|.++++ .|.+... ...+..+.++++.++.|++.||+++++....+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~ 324 (438)
T TIGR00712 249 PNKLLWYIAIANVFVYLL----RYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGV 324 (438)
T ss_pred cCchHHHHHHHHHHHHHH----HHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHH
Confidence 777776655544443332 23344566666665 4655543 455667788999999999999996443222232
Q ss_pred HHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHH-HHHHH
Q 011308 359 LGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVIN-FFVGL 437 (489)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~ 437 (489)
....+........... ...+.+.........+.+. .+..........|.+|++.|+++.|+.+...++++ .++|.
T Consensus 325 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~ 400 (438)
T TIGR00712 325 FFMTLVTIAVIVYWMN---PAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 400 (438)
T ss_pred HHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcch
Confidence 2222111111111100 0111121222222222211 11111222356788999999999999999988875 68999
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCC
Q 011308 438 LFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETK 474 (489)
Q Consensus 438 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (489)
+.|.+.|+.|+...+.+.+++++++.+..+...+|.|
T Consensus 401 l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 401 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999888888888777777777665
No 48
>TIGR00895 2A0115 benzoate transport.
Probab=100.00 E-value=7.4e-33 Score=264.92 Aligned_cols=381 Identities=21% Similarity=0.262 Sum_probs=264.7
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
+++++.+....+..+..+++.....+..|.+.+++|.+..+. |++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 90 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL 90 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence 345566666667777777777788889999999999987777 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308 127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW 206 (489)
Q Consensus 127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 206 (489)
+.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g- 169 (398)
T TIGR00895 91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG- 169 (398)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhHHHHHHHH-HHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccc
Q 011308 207 WRICFWVATIPAAFLA-LFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPR 285 (489)
Q Consensus 207 Wr~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (489)
||+.|++.++..++.. +...++||++++..++ +.++..+..++.......+.+. +..+.+.+.+..+...+.+++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 247 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALPEQKATQGTKRSVFKALFQGK 247 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-cccccccccchhhHHHHHHhcch
Confidence 9999999865555443 3455688887655444 3333322222221111100000 00000000111111222233333
Q ss_pred cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308 286 NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMA 362 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 362 (489)
..+........ .+...........+.|.+.++.+.+... ......++.+++.++.+++.||+++|+....... ..
T Consensus 248 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ 325 (398)
T TIGR00895 248 TARITVLLWLL-YFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLL-GA 325 (398)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HH
Confidence 22222222111 1222223444555667666777766544 4556678889999999999999998844433333 33
Q ss_pred HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL 442 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 442 (489)
+...++.... .+........++.+.+.+.. .+...+++.|.+|++.|+++.|+.+...++|..++|.+.|.+
T Consensus 326 ~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 326 VFAVLVGSTL-------FSPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHh-------hCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 3222222211 11222333444444444433 345667899999999999999999999999999999999875
No 49
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=100.00 E-value=1.7e-32 Score=263.06 Aligned_cols=372 Identities=16% Similarity=0.127 Sum_probs=265.2
Q ss_pred HHHHHHHhhhhccccccccchhhhhhhcccccccch---HHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308 53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTM---AEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI 129 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 129 (489)
...++++.++..+......+.+|.+.+++|.+..+. ..|++.+++.++..++++++|+++||+|||+++..+.++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 95 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG 95 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence 345556667777777788899999999999886553 24889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308 130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI 209 (489)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~ 209 (489)
++.++..++++++.+++.|++.|++.+ ..+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+ ||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~ 173 (408)
T PRK09874 96 IVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRP 173 (408)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHH
Confidence 999999999999999999999999855 567778889999999999999999999999999999999999988888 999
Q ss_pred HHHHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccccc
Q 011308 210 CFWVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFG 288 (489)
Q Consensus 210 ~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (489)
.|++.++..++..+.. ++++|+++. +++ ++ +.+..+..+.++++.++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~----------------------------~~~~~~~~~~~~~~~~~ 221 (408)
T PRK09874 174 VFFITASVLFLCFLVTLFCIRENFQP---VSK-KE----------------------------MLHMREVVTSLKNPKLV 221 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccc---ccc-hh----------------------------hhHHHHHHHhCcCCchH
Confidence 9999888776665544 335554320 000 00 00001122234445443
Q ss_pred chhhh-HHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc-------hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308 289 VVFIG-STLFALQQLSGINAVFYFSSTVFKNAGVPSDS-------GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360 (489)
Q Consensus 289 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 360 (489)
..... ...... .......+.+.+..+.+.+... .....+++.+++.+..|++.||++||+.+..+...
T Consensus 222 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~ 297 (408)
T PRK09874 222 LSLFVTTLIIQV----ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIF 297 (408)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 32222 111111 1122222333333332222111 23344567778888899999999999988877776
Q ss_pred HHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFL 440 (489)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 440 (489)
..++.+...... +.+.......+.+.+.+. ..+.......+..|++++|+.+++.+...++|..++|.+.|
T Consensus 298 ~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G 368 (408)
T PRK09874 298 SVLLLIPMSFVQ--------TPLQLGILRFLLGAADGA-LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGA 368 (408)
T ss_pred HHHHHHHHHHhc--------cHHHHHHHHHHHHhhhHh-hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHH
Confidence 655554433321 112233333344444432 23444556677788889999999999999999999999999
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHHhhhccc
Q 011308 441 RLLEQLGPLILYTIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 441 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
.+.+..|+...|.+.+++.+++.++.++..+
T Consensus 369 ~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 369 AISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888776655433
No 50
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=100.00 E-value=8e-32 Score=256.69 Aligned_cols=373 Identities=14% Similarity=0.056 Sum_probs=254.5
Q ss_pred HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH
Q 011308 55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM 134 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 134 (489)
...++.++.........+.++.+.+|+|.+.++. |++.+.+.+++.+++++.|+++||+||||++..+.+++++++++
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~ 94 (402)
T TIGR00897 17 WGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAA 94 (402)
T ss_pred HHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 3344444444444445556677778999988877 99999999999999999999999999999999999999988776
Q ss_pred Hh---h-hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHH-HHHHHhhcccccccchHHH
Q 011308 135 SA---I-TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGI-LVALFVGLPAKEILGWWRI 209 (489)
Q Consensus 135 ~~---~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~i~~~~~~~l~~~~~~Wr~ 209 (489)
+. . .++++.+++.|+++|++.+...+.....+.+++|+++|++++++.+.+.++|. .+++.+++.+.+..+ |+.
T Consensus 95 ~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~ 173 (402)
T TIGR00897 95 FIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMN 173 (402)
T ss_pred HHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHH
Confidence 53 3 35788889999999999888888888889999999999999999999999997 589999988888777 666
Q ss_pred HHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccccc
Q 011308 210 CFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFG 288 (489)
Q Consensus 210 ~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (489)
.++.......+..+. .++.+|.++. ++.+++ ++.++....+++++++|.++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~ 225 (402)
T TIGR00897 174 TLWSALAFVLTGGVIALFSNKDIFTP--QHMQTR--------------------------EKFSELGKAATILFTNPNVL 225 (402)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCc--ccccCC--------------------------cchhhHHHHHHHHHcChhHH
Confidence 555444333332222 2233433210 000000 00001112345677778776
Q ss_pred chhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHH-HHHHHHHHH
Q 011308 289 VVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLL-GSFLGMAIA 364 (489)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~ 364 (489)
...+..++... .......+.|.+.++.|.+... ......++..++.+..|+++||++||+... .+.+...++
T Consensus 226 ~~~~~~~~~~~----~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~ 301 (402)
T TIGR00897 226 LGGMVRIINTI----GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIF 301 (402)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 55444433332 3344556677777777776655 334556788999999999999999887653 233333333
Q ss_pred HHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 365 MGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (489)
...+....... ..+.+.......+.+.+.+. ..+.. ....|..| ++||++.|+.+...+++..++|.+.|.+.+
T Consensus 302 ~~~l~~~~~~~---~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~ 375 (402)
T TIGR00897 302 TLALYYIPQHF---GHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIG 375 (402)
T ss_pred HHHHHHHHHcc---CCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22322222110 11222233334444444332 23333 35567655 679999999999999999999999999999
Q ss_pred HhccchhhHHHHHHHHHHHHHhhh
Q 011308 445 QLGPLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 445 ~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
..|+...+++.+++.+++.++..+
T Consensus 376 ~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 376 FFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888777666554
No 51
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=100.00 E-value=1.2e-32 Score=262.07 Aligned_cols=348 Identities=19% Similarity=0.173 Sum_probs=252.7
Q ss_pred HHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308 54 LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 133 (489)
..+....+....+.....+.+|.+.+++|.++++. |++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 85 (385)
T TIGR00710 8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSL 85 (385)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHH
Confidence 33334445566777788899999999999988877 9999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308 134 MSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV 213 (489)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~ 213 (489)
+.+++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+.+..+ ||+.|++
T Consensus 86 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~ 164 (385)
T TIGR00710 86 GLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAF 164 (385)
T ss_pred HHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988888 9999999
Q ss_pred hHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308 214 ATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI 292 (489)
Q Consensus 214 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
.++..++..+.. ++.||+++. +++ ++.++....+++.++++.++...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~---~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 213 (385)
T TIGR00710 165 LSLAGILLSALIFFILPETLPY---EAR----------------------------IQISTYFETFLLLLKSKMFWGYAL 213 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCCCC---ccc----------------------------CCHHHHHHHHHHHHcCchhHHHHH
Confidence 887776665544 345665421 000 000111223456677777665544
Q ss_pred hHHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHH
Q 011308 293 GSTLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQ 368 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 368 (489)
........ ......+.|.++. ..+.+... ......++.+++.++.+++.||+++|+.+..+..+..++.+++
T Consensus 214 ~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 289 (385)
T TIGR00710 214 IYGASFGG----FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLL 289 (385)
T ss_pred HHHHHHHH----HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 43333322 2223333444443 45665544 4455667888999999999999999998887777666665555
Q ss_pred HHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 369 AIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (489)
....... ............+.+.+.+.. .+.......|..| +.++++.++.+...+.++.+.+.+.+.+.+
T Consensus 290 ~~~~~~~---~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~ 360 (385)
T TIGR00710 290 EITAILG---LGSWAMIIGPMMFVGIGNSMI-SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG 360 (385)
T ss_pred HHHHHhc---cchHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4432211 111122222233333433332 2344456677777 569999999999988777777777764433
No 52
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=100.00 E-value=4.6e-33 Score=263.10 Aligned_cols=351 Identities=15% Similarity=0.117 Sum_probs=261.4
Q ss_pred HHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH
Q 011308 56 AIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS 135 (489)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 135 (489)
+..+.++..+......+.+|.+.++++.+..+. |++.+++.++..++++++|+++||+|||+++..+.++.+++.++.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVL--SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence 345566677777778888999999988877776 999999999999999999999999999999999999999999888
Q ss_pred hhhh-----hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHH
Q 011308 136 AITK-----NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRIC 210 (489)
Q Consensus 136 ~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~ 210 (489)
++++ +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+ ||+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~ 160 (365)
T TIGR00900 82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWA 160 (365)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHH
Confidence 8887 999999999999999999999999999999999999999999999999999999999999998888 9999
Q ss_pred HHHhHHHHHHHHHHhhcc--cCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccccc
Q 011308 211 FWVATIPAAFLALFMEFC--AESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFG 288 (489)
Q Consensus 211 f~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (489)
|++.++..++..+..+.+ ||+++ +++.+..+ +..++....++++++++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~ 213 (365)
T TIGR00900 161 IWVDAVGFAISALLIVSVRIPELAA----SEIQALSN-----------------------AVLRDTREGIKFVLKNPLLR 213 (365)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCC----ccccccch-----------------------hHHHHHHhHHHHHHcCcHHH
Confidence 999887766655444333 22211 00000000 00011122355667777776
Q ss_pred chhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 011308 289 VVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIA 364 (489)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 364 (489)
......++........ ...+.|.+.++ .+.+... .....+++.+++.++.+++.||.+||+....+..+.+++
T Consensus 214 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 214 TLLLLALLFNLVFAPA---IVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHH---HHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 5555444444322211 12344444443 4554433 555667788899999999999999999888776666665
Q ss_pred HHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 365 MGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (489)
...+.+... +.+......++.+.+.+.. .+....+..|..|+++|+++.|+.+...+++..++|.+.|.+.|
T Consensus 291 ~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 291 ILVVGLTPP-------NFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HHHHHhhch-------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443321 1233444445555544433 35566688899999999999999999999999999999999998
Q ss_pred Hhc
Q 011308 445 QLG 447 (489)
Q Consensus 445 ~~g 447 (489)
..|
T Consensus 363 ~~g 365 (365)
T TIGR00900 363 HLG 365 (365)
T ss_pred HcC
Confidence 754
No 53
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-33 Score=248.99 Aligned_cols=383 Identities=19% Similarity=0.179 Sum_probs=294.1
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
..+.+.+..++.....+...+.++..+.+.+|+|+|++|. +++.++..+..++..++.|.+.||+|.|++..+++++.
T Consensus 12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 3455666666667777778888999999999999999988 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHH---HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 129 IIGASMSAITKNLW---GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 129 ~i~~~~~~~~~~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
.+-.+..+++.+.+ ++++++++.|++ |..+.....++++|||++++|.++|++. ..++|..+...++..+....+
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g 167 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG 167 (417)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence 99999999986555 999999999998 6677899999999999999999999999 888899888888888887777
Q ss_pred h--HHHHHHHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhh-hhHHhh
Q 011308 206 W--WRICFWVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADA-VKFSEL 281 (489)
Q Consensus 206 ~--Wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 281 (489)
. ||....+..+..++..+.. +...|.|+. + ...++.. ..++.+
T Consensus 168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~---r------------------------------~~~~~~~~~~~~~v 214 (417)
T COG2223 168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH---R------------------------------ASVKPQLPAQLKAV 214 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh---h------------------------------ccccccchhHHHHH
Confidence 3 8999888888877765554 446666531 0 0011111 456778
Q ss_pred hccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308 282 ISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM 361 (489)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 361 (489)
+++++.|...+.++..+........+++.|+.+.+...+..++.........+.+.++++|+++||+|.+|........+
T Consensus 215 ~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~ 294 (417)
T COG2223 215 FSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGM 294 (417)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHH
Confidence 88888887777666665543333334444443333333344444666667788889999999999999999988888888
Q ss_pred HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 362 AIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR 441 (489)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 441 (489)
+++..+.......... ..+....+..++......+.+.... +.++...+| ++.|.+.|+....+.+|++.-|...|.
T Consensus 295 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~ 371 (417)
T COG2223 295 ALAAALLSLFLTGFGH-GGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGV 371 (417)
T ss_pred HHHHHHHHcccccccc-CcchHHHHHHHHHHHHHhccCcchh-eeechHHHH-hhhhHHHHHHHHhccccccchhHHHHH
Confidence 8777776665433211 2333444454555566666666544 447778877 469999999999999999999999999
Q ss_pred HHHHhc-cchhhHHHHHHHHHHHHHhhhccc
Q 011308 442 LLEQLG-PLILYTIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 442 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
..+..| +...|.++..+.+++.+..+....
T Consensus 372 ~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 372 SLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 788888888888888876665443
No 54
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=100.00 E-value=8.1e-34 Score=269.72 Aligned_cols=370 Identities=15% Similarity=0.145 Sum_probs=254.7
Q ss_pred HhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh
Q 011308 59 SSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT 138 (489)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~ 138 (489)
+++...+++..+++..|.+.+++|.+.++. |++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~ 80 (379)
T TIGR00881 3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS 80 (379)
T ss_pred hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence 345666778888999999999999988887 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHH-HhhcccccccchHHHHHHHhHHH
Q 011308 139 KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVAL-FVGLPAKEILGWWRICFWVATIP 217 (489)
Q Consensus 139 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~-~~~~~l~~~~~~Wr~~f~~~~~~ 217 (489)
++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+..+ ||+.|++.++.
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGII 159 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 57776777777 99999988877
Q ss_pred HHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHH
Q 011308 218 AAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTL 296 (489)
Q Consensus 218 ~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (489)
.++..+. .++.+|+|+....+++ ++... + ..+ ++.++++++.+..+...+++++++.++...+..++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (379)
T TIGR00881 160 AIIVSLICFLLLRDSPQSCGLPPA-EEMPN-------E-EPD---GDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVF 227 (379)
T ss_pred HHHHHHHHheeeCCCccccccCcc-ccCcc-------c-ccc---cccccccccccchHHHHHHHHhcchHHHHHHHHHH
Confidence 6665444 4446766532110000 00000 0 000 00000011111222345667777777665555444
Q ss_pred HHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCC-chhHHHHHHHHHHHHHHHHHH
Q 011308 297 FALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGR-RVLLLGSFLGMAIAMGVQAIA 371 (489)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 371 (489)
.... ......+.+.++.+ .+.+... ......++.+++.++.+++.||..+ |+... ...........+...
T Consensus 228 ~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~-~~~~~~~~~~~~~~~ 302 (379)
T TIGR00881 228 VYVV----RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL-AVFFMALIIVSLLVY 302 (379)
T ss_pred HHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH-HHHHHHHHHHHHHHH
Confidence 4432 23344445555543 4555443 5556677888999999999998643 33322 211111111111111
Q ss_pred hhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 011308 372 ATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLIL 451 (489)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 451 (489)
... ...+.........+.+.. ..+..+....+..|..|++.|+++.|+.+...++|+.++|.+.|.+.|..||+..
T Consensus 303 ~~~---~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 303 WLN---PAANPLMDLICLFALGFL-VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred hcC---cchhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 100 011112222222222222 2233334455788999999999999999999999999999999999999998764
Q ss_pred h
Q 011308 452 Y 452 (489)
Q Consensus 452 ~ 452 (489)
|
T Consensus 379 f 379 (379)
T TIGR00881 379 F 379 (379)
T ss_pred C
Confidence 3
No 55
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=100.00 E-value=2.5e-32 Score=260.17 Aligned_cols=368 Identities=13% Similarity=0.084 Sum_probs=251.6
Q ss_pred HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308 53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 132 (489)
...+.+..+...++.....|.+|.+.++++.+.++. ++..+++.++++++++++|+++||+|||+++..+.+++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~ 95 (413)
T PRK15403 18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLAC 95 (413)
T ss_pred HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHH
Confidence 334455566677788889999999999999988877 899999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHH
Q 011308 133 SMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFW 212 (489)
Q Consensus 133 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~ 212 (489)
+++++++|++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+||.+++.+.+..+ ||+.|+
T Consensus 96 ~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~ 174 (413)
T PRK15403 96 AATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFA 174 (413)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHH
Confidence 9999999999999999999999887777778889999999999999999999999999999999999988878 999999
Q ss_pred HhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchh
Q 011308 213 VATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVF 291 (489)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (489)
+.++..++..+. ++++||+++. ++++ ...+.....++++++++.++...
T Consensus 175 ~~~~~~~i~~~~~~~~lp~~~~~---~~~~---------------------------~~~~~~~~~~~~ll~~~~~~~~~ 224 (413)
T PRK15403 175 IIAVMGLIAFVGLLLAMPETVKR---GAVP---------------------------FSAKSVLRDFRNVFRNRLFLTGA 224 (413)
T ss_pred HHHHHHHHHHHHHHHhCCCCccc---cCCC---------------------------CChHHHHHHHHHHHcCHHHHHHH
Confidence 988887776554 3447876430 0000 00011123456778888777655
Q ss_pred hhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCch---hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH
Q 011308 292 IGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDSG---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGV 367 (489)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 367 (489)
+...+.... ......+.|.++++ .+.+.... ......+.+++..+.+++.++..+++..........++.++
T Consensus 225 l~~~~~~~~----~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l 300 (413)
T PRK15403 225 ATLSLSYIP----MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLAL 300 (413)
T ss_pred HHHHHHHHH----HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence 554443332 23333445655554 36665542 23345566666677777665444434333333333333333
Q ss_pred HHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308 368 QAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 447 (489)
+....... .+..+..+....+++.+.+.... ......-+. ....+|++.++.+.....+...++...+++.+. +
T Consensus 301 ~~~~~~~~---~~~~~~~~~~~~l~~~G~~~~~p-~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~ 374 (413)
T PRK15403 301 LIVGNLLW---PHVWLWSVLGTSLYAFGIGLIFP-TLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-G 374 (413)
T ss_pred HHHHHHHc---cccHHHHHHHHHHHHHHHHHHhH-HHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 32221110 11122223444445555444332 222111111 222379999999999999999999999987776 5
Q ss_pred cchhhHHHHHHHHHHH
Q 011308 448 PLILYTIFGSFCFLAV 463 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~ 463 (489)
....|...++++.+..
T Consensus 375 ~~~~~~~~~~~~~~~~ 390 (413)
T PRK15403 375 GRLPFHLLAVVAGVIV 390 (413)
T ss_pred CchHHHHHHHHHHHHH
Confidence 5556655555544443
No 56
>PRK11043 putative transporter; Provisional
Probab=100.00 E-value=1.3e-31 Score=255.95 Aligned_cols=343 Identities=18% Similarity=0.127 Sum_probs=247.9
Q ss_pred hhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh
Q 011308 60 SFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK 139 (489)
Q Consensus 60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~ 139 (489)
..+..+....+.|.+|.+.+++|.++++. |++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++.+++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence 44455667778889999999999988877 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHH
Q 011308 140 NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAA 219 (489)
Q Consensus 140 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~ 219 (489)
+++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+..+ ||+.|++.++..+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~ 171 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAITL 171 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Confidence 999999999999999888888888999999999999999999988899999999999999998888 9999999888877
Q ss_pred HHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHh
Q 011308 220 FLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFAL 299 (489)
Q Consensus 220 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (489)
+..+..++++|+++. + + +++.+.+++++++++.++...+...+...
T Consensus 172 ~~~~~~~~~~~~~~~---~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (401)
T PRK11043 172 LLILPTLRLKPSKKA---R-K------------------------------QSQDALTFKQLLKSKTYLGNVLIFAACSA 217 (401)
T ss_pred HHHHHHHHcCCCCCc---c-c------------------------------cchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 766655555554320 0 0 00112245566666665543333222221
Q ss_pred hhhcchhHHHHhHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 011308 300 QQLSGINAVFYFSSTVFKNAGVPSDSG---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFV 376 (489)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (489)
.......+.|.+.++.+.+.... .....++.+++.+..+++.||+++|+..........++.+.+.......
T Consensus 218 ----~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 292 (401)
T PRK11043 218 ----AFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS- 292 (401)
T ss_pred ----HHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 22233345566666677766543 2334567778888899999999988876655555444433332222111
Q ss_pred CCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011308 377 SSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGP 448 (489)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 448 (489)
....+..+....+.+.+.+. ..+.......+..| +++|++.|+.+.....++..++.+.|.+.+....
T Consensus 293 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~ 360 (401)
T PRK11043 293 --HPSLVPLLIPFCVMAAANGA-IYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLL 360 (401)
T ss_pred --cCcHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChh
Confidence 11222233333344444433 23444445556666 5799999999999999999999999988774333
No 57
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=100.00 E-value=5.6e-32 Score=256.58 Aligned_cols=359 Identities=15% Similarity=0.132 Sum_probs=253.4
Q ss_pred HHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhh-hhhHHHHHHHHHH
Q 011308 58 ISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQ-LCALPMIIGASMS 135 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~ 135 (489)
+.+++..+..+...+.+|. +.+++|.+..+. |++.+.+.+...+.+++.|+++||+||||.++ .+..+..++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence 3456667777788888886 567899988777 99999999999999999999999999988765 4566667778888
Q ss_pred hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhH--HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308 136 AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAY--GSSTQIAACLGILVALFVGLPAKEILGWWRICFWV 213 (489)
Q Consensus 136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~ 213 (489)
++++|++.+++.|+++|.+.+...|...+++.|+.|+++|++. .+....+.++|.++++.+++.+.+..+ ||+.|++
T Consensus 82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~ 160 (375)
T TIGR00899 82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLT 160 (375)
T ss_pred HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHH
Confidence 9999999999999999988888888888899999887777654 577888889999999999999998888 9999999
Q ss_pred hHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308 214 ATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI 292 (489)
Q Consensus 214 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
.++..++..+.. +++||+|+...++ +...+.++.++++.++....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~ 206 (375)
T TIGR00899 161 AALAFVLCGVLVWLFLPSYPRGAPGA----------------------------------LTRLEVRGLLASRDTRLLFV 206 (375)
T ss_pred HHHHHHHHHHHHHHhCCCcccCcccc----------------------------------cCcchhhhhhcCcchHHHHH
Confidence 988776665554 4478765310000 00011223455555554443
Q ss_pred hHHHHHhhhhcchhHHHHhHHHHH-HhcCCCCCchhH---HHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHH
Q 011308 293 GSTLFALQQLSGINAVFYFSSTVF-KNAGVPSDSGNI---CVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQ 368 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 368 (489)
..++.... ......+.+.++ +..+.+...... ......+++.++.|++.||+++|+.+..+.+...+....+
T Consensus 207 ~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~ 282 (375)
T TIGR00899 207 ACTLMWGC----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGL 282 (375)
T ss_pred HHHHHHHH----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 33333221 122222334443 345665554322 3334556778899999999999998877665544443333
Q ss_pred HHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011308 369 AIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGP 448 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 448 (489)
.... +.+.......+.+.+.+.. .+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..|+
T Consensus 283 ~~~~--------~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~ 352 (375)
T TIGR00899 283 AADN--------SLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSY 352 (375)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2221 1122333333333333322 24455677888875 577999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHhh
Q 011308 449 LILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~ 467 (489)
+..|.+.+++++++.++..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 353 HAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 9999888888877766654
No 58
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=100.00 E-value=5.1e-32 Score=257.83 Aligned_cols=350 Identities=21% Similarity=0.209 Sum_probs=242.3
Q ss_pred HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH
Q 011308 55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM 134 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 134 (489)
......+..........+.+|.+.+++|.+.++. ++..+.+.++..+++++.|+++||+|||+++..+.++..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 3444445555566667788999999999988777 99999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHh
Q 011308 135 SAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVA 214 (489)
Q Consensus 135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~ 214 (489)
+..+++++.+++.|+++|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++.
T Consensus 85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~ 163 (392)
T PRK10473 85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTM 163 (392)
T ss_pred HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHH
Confidence 99999999999999999999999899999999999999999999999999999999999999998887778 99999998
Q ss_pred HHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308 215 TIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG 293 (489)
Q Consensus 215 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (489)
++..++..+. .+++||+++. +++ + +.......++.++++.++.....
T Consensus 164 ~~~~~i~~~~~~~~~~~~~~~---~~~-~----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 211 (392)
T PRK10473 164 AAMGILVLLLSLFILKETRPA---RAP-A----------------------------ASSKPRENSESLLNRFFLSRLVI 211 (392)
T ss_pred HHHHHHHHHHHHHHcCCCCCc---ccC-C----------------------------ccchHHHHHHHHhCHHHHHHHHH
Confidence 8777666554 3446665421 000 0 00001122334555554433332
Q ss_pred HHHHHhhhhcchhHHHHhHHHHH-HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 011308 294 STLFALQQLSGINAVFYFSSTVF-KNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQA 369 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 369 (489)
..+.... ......+.+.++ ++.|.+... .....+++.+++.++.+++.||+++|+.+..+..+..++.+.+.
T Consensus 212 ~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~ 287 (392)
T PRK10473 212 TTLSVTV----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA 287 (392)
T ss_pred HHHHHHH----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 111222233333 345666544 44556778889999999999999999998888877777666655
Q ss_pred HHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308 370 IAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL 449 (489)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 449 (489)
+.... ........+...+.+.+.. . ....+..|.++++ |.......++..+++.+.+.+.+..|+.
T Consensus 288 ~~~~~--------~~~~~~~~l~~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~ 353 (392)
T PRK10473 288 LSPSH--------AVSLFGITLICAGFSVGFG-V--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGIS 353 (392)
T ss_pred HHHHH--------HHHHHHHHHHHHHHHHHhH-H--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 54321 1122223333333333222 1 2233444544343 4444555677778888888888888876
Q ss_pred hhhHHHHH
Q 011308 450 ILYTIFGS 457 (489)
Q Consensus 450 ~~~~~~~~ 457 (489)
......+.
T Consensus 354 ~~~~~~~~ 361 (392)
T PRK10473 354 AWNMLIGI 361 (392)
T ss_pred hhHHHHHH
Confidence 54444443
No 59
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=100.00 E-value=1.4e-31 Score=253.45 Aligned_cols=370 Identities=16% Similarity=0.063 Sum_probs=251.8
Q ss_pred HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH
Q 011308 55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM 134 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 134 (489)
.++++.++..++........+.+.+|++.+..+. +++.+.+.+++.++++++|+++||+|||++++.+.++.++++++
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 4456666666655555666667788888876666 99999999999999999999999999999999999999999988
Q ss_pred HhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHh
Q 011308 135 SAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVA 214 (489)
Q Consensus 135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~ 214 (489)
++++.+. ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++++.+.. |+..+.+.
T Consensus 85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~--~~~~~~i~ 159 (393)
T PRK11195 85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH--AEAALAVC 159 (393)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 8777664 688999999999999999999999999999999999999999999999999999998853 77777776
Q ss_pred HHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhH
Q 011308 215 TIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGS 294 (489)
Q Consensus 215 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (489)
+...++..+..+.+||+++.. ++++++..+.. ++....++.+++++.++......
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~~ 214 (393)
T PRK11195 160 ALIYLLAALFNLFIPRLGARR--PGQSWNPIALL-----------------------RDFFHACRVLWRDKLGRFSLAGT 214 (393)
T ss_pred HHHHHHHHHHHhcCCCCcccc--cccCCCHHHHH-----------------------HHHHHHHHHHHhCchhHHHHHHH
Confidence 655555544555678765311 11100000000 00011234566777665444433
Q ss_pred HHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHH
Q 011308 295 TLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIA 371 (489)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (489)
.+............+.|.+.. .+.+... .....+++.+++.+..+++.||.++++.+..+.. .++....+.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~---lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~ 290 (393)
T PRK11195 215 TLFWGAGATLRFLVLAWAPVA---LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ 290 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH
Confidence 333322222222233333333 3444433 5566678888999999999999888877666643 23322222221
Q ss_pred hhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 011308 372 ATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRI-RAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLI 450 (489)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 450 (489)
. +.+.......+.+.+.+....+. .+...+..|++. +|++.++.+...+++..++..+.+.+ +..|-..
T Consensus 291 ~--------~~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 360 (393)
T PRK11195 291 H--------SLLPAYPLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPV 360 (393)
T ss_pred h--------HHHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCH
Confidence 1 12223333444445444444343 445677766554 79999999999999999999999854 6788777
Q ss_pred hhHHHHHHHHHHHHHhhhcc
Q 011308 451 LYTIFGSFCFLAVIYVKRNV 470 (489)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~ 470 (489)
.+.+.+...+++..+.+.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 361 VAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77666655555555554444
No 60
>PRK10133 L-fucose transporter; Provisional
Probab=100.00 E-value=1.1e-31 Score=256.84 Aligned_cols=367 Identities=13% Similarity=0.085 Sum_probs=255.5
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
....+..+++..+..++......+..|.+++++|+++++. |++.+.+.+++.+++++.|++.||+|||+++..+.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3445566667778888888889999999999999988777 99999999999999999999999999999999999999
Q ss_pred HHHHHHH---hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc---
Q 011308 129 IIGASMS---AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE--- 202 (489)
Q Consensus 129 ~i~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~--- 202 (489)
+++++++ .++++++.++++|+++|+|.+...+..+.++.|+.++++|.+.+++.+..+.+|..+++.+++.+..
T Consensus 102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~ 181 (438)
T PRK10133 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999885 4688999999999999999999999999999998877777778999999999999999988765430
Q ss_pred ---------------c--------cchHHHHHHHhHHH-HHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCc
Q 011308 203 ---------------I--------LGWWRICFWVATIP-AAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHV 257 (489)
Q Consensus 203 ---------------~--------~~~Wr~~f~~~~~~-~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (489)
. .+ ||++|+..... .++..+. ....||.+. +++
T Consensus 182 ~~~~~~~~~~l~~~~~~~w~~~~~~~-w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~----------------- 239 (438)
T PRK10133 182 PHQSQDVLDKMTPEQLSAYKHSLVLS-VQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH----------------- 239 (438)
T ss_pred cccchhhhhccChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc-----------------
Confidence 0 13 67777643333 3232222 222444221 000
Q ss_pred hHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHH-HH-hcCCCCCc---hhHHHHH
Q 011308 258 KYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTV-FK-NAGVPSDS---GNICVGI 332 (489)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~---~~~~~~~ 332 (489)
.+++..+...+.++++++|.++...+..++...... ....|.+.+ .+ ..+.+... ......+
T Consensus 240 ---------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~ 306 (438)
T PRK10133 240 ---------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT----ACWSYLIRYAVEEIPGMTAGFAANYLTGTMV 306 (438)
T ss_pred ---------ccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence 000001112234567777877655544444433222 222334434 33 35666654 4567778
Q ss_pred HHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccC
Q 011308 333 ANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIF 412 (489)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (489)
+.++++++++++.||+++|+.+..+..+..+.+++..+... . ..+..+.+.+++.+.. .|..+....+..
T Consensus 307 ~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~l~glg~~~i-~P~~~s~a~~~~ 376 (438)
T PRK10133 307 CFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG--------H-VGLIALTLCSAFMSIQ-YPTIFSLGIKNL 376 (438)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC--------h-HHHHHHHHHHHHHHHH-HHHHHHHHHccc
Confidence 88999999999999999999888776666555444332211 1 1233344455555433 456666777877
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHH
Q 011308 413 PNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVI 464 (489)
Q Consensus 413 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 464 (489)
|+ +.+++.++.. +...|+.++|.+.|.+.|..| .+..|++.....+....
T Consensus 377 ~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 377 GQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred ch-hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 74 4788888886 455788999999999999887 56666655444444333
No 61
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-32 Score=255.69 Aligned_cols=363 Identities=18% Similarity=0.182 Sum_probs=263.2
Q ss_pred hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh--hHHHHHHHHHHHhhcc
Q 011308 78 SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK--NLWGMLLGRLFVGTGM 155 (489)
Q Consensus 78 ~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~ 155 (489)
..+++++.++. |++.++++.|+.+++++.|+++||+|.|+++..+.++.++++++...+. +++.+++.|++||++.
T Consensus 65 ~~~~~ws~~~k--~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~ 142 (466)
T KOG2532|consen 65 AGEYDWSSTEK--GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ 142 (466)
T ss_pred CceecCCHHHH--HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence 44677777666 9999999999999999999999999999999999999999999998875 5567789999999999
Q ss_pred cchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc-cchHHHHHHHhHHHHHHHHHHhhc-ccCChh
Q 011308 156 GIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI-LGWWRICFWVATIPAAFLALFMEF-CAESPH 233 (489)
Q Consensus 156 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~ 233 (489)
|..+|+...+..+|.|++||++..++..++..+|.+++.+++|.+.+. .| |+++|++.++.+++..+++++ ..|+|.
T Consensus 143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~ 221 (466)
T KOG2532|consen 143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPS 221 (466)
T ss_pred hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999998 77 999999999999998887655 667774
Q ss_pred HHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHH
Q 011308 234 WLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSS 313 (489)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (489)
. .+.-..+|.+.. ++ . ..++..+++.+.+++++++++.+|.+.+..+.... ....+..|+|
T Consensus 222 ~-h~~is~~El~~I-~~---~----------k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~----~~~~l~~y~P 282 (466)
T KOG2532|consen 222 K-HPNISEKELKYI-EK---G----------KSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNW----GFYLLLTYLP 282 (466)
T ss_pred c-CCCCCHHHHHHH-Hh---c----------ccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHH----HHHHHHHHhh
Confidence 2 111111111111 10 0 01111112256789999999999988777666665 4555666666
Q ss_pred HHHHh-cCCCC---CchhHHHHHHHHHHHHHHHHHHhhhCCc--------hh-HHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308 314 TVFKN-AGVPS---DSGNICVGIANLSGSIIAMILMDKLGRR--------VL-LLGSFLGMAIAMGVQAIAATSFVSSSG 380 (489)
Q Consensus 314 ~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
.++++ .+++. +....+..+...+..+++|.++||+.+| +. -..+....+++++++.+... .
T Consensus 283 tY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~------~ 356 (466)
T KOG2532|consen 283 TYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD------E 356 (466)
T ss_pred HHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC------C
Confidence 66664 44443 3467777888999999999999998663 11 12222333333333332221 1
Q ss_pred chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccchhhHHHHH
Q 011308 381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE---QLGPLILYTIFGS 457 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~ 457 (489)
..+..+..+.+.. +......+-.+....+..| ++.+..+|+.+....+.++++|.+.|.+.. ...|+.+|++.++
T Consensus 357 ~~~~a~~~l~~~~-~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~ 434 (466)
T KOG2532|consen 357 HRLLAVILLTIAI-GLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAG 434 (466)
T ss_pred cchHHHHHHHHHH-HHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHH
Confidence 1122222222222 2221222222323334345 789999999999999999999999999983 3469999999999
Q ss_pred HHHHHHHHhhhcc
Q 011308 458 FCFLAVIYVKRNV 470 (489)
Q Consensus 458 ~~~~~~~~~~~~~ 470 (489)
+.+++.++..++-
T Consensus 435 i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 435 ILIVGNIIFLFFG 447 (466)
T ss_pred HHHHhchheeEee
Confidence 9999887665553
No 62
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=100.00 E-value=1.4e-30 Score=244.90 Aligned_cols=342 Identities=28% Similarity=0.399 Sum_probs=276.9
Q ss_pred HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH
Q 011308 55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM 134 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 134 (489)
.+.+..+...++.....+..|.+.+++|.+.++. +++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 3445667777888888999999999998887777 99999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHh
Q 011308 135 SAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVA 214 (489)
Q Consensus 135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~ 214 (489)
..++++++.++++|++.|++.+...+....++.|++|+++|++.+++......+|..+++.+++.+.+..+ ||+.|++.
T Consensus 81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 159 (352)
T cd06174 81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLIL 159 (352)
T ss_pred HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888 99999998
Q ss_pred HHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhH
Q 011308 215 TIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGS 294 (489)
Q Consensus 215 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (489)
++..++..+...+++ |.++...+..
T Consensus 160 ~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~ 184 (352)
T cd06174 160 AILGLLLALLLLFLL-------------------------------------------------------RLLLLLALAF 184 (352)
T ss_pred HHHHHHHHHHHHHHH-------------------------------------------------------HHHHHHHHHH
Confidence 887776655543321 1122222222
Q ss_pred HHHHhhhhcchhHHHHhHHHHHHhc-CCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCch-hHHHHHHHHHHHHHHHH
Q 011308 295 TLFALQQLSGINAVFYFSSTVFKNA-GVPSDS---GNICVGIANLSGSIIAMILMDKLGRRV-LLLGSFLGMAIAMGVQA 369 (489)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~ 369 (489)
++. .........+.+.+.++. +.+... ......++..++.++.+++.||+++|+ .+..+..+..++...+.
T Consensus 185 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 185 FLL----SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HHH----HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 222 223455555666666654 554443 556667888999999999999999999 88888887777776665
Q ss_pred HHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308 370 IAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL 449 (489)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 449 (489)
.... .+.......+.+.+.+. ..+....+..|..|+++|++.+|+.+...+++..++|.+.+.+.+..++.
T Consensus 261 ~~~~--------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~ 331 (352)
T cd06174 261 LAPS--------LALLLVALLLLGFGLGF-AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG 331 (352)
T ss_pred Hhcc--------HHHHHHHHHHHHHHHhc-cchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence 5432 23334444445554443 44666778999999999999999999999999999999999999989999
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 011308 450 ILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~ 467 (489)
..+.+.+++.+++.++.+
T Consensus 332 ~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 332 GVFLILAALALLAALLLL 349 (352)
T ss_pred hHHHHHHHHHHHHHHHhe
Confidence 999999988888776654
No 63
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=100.00 E-value=2.7e-32 Score=256.54 Aligned_cols=343 Identities=22% Similarity=0.330 Sum_probs=250.0
Q ss_pred HHHhhhhccccccccchhh-hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH
Q 011308 57 IISSFLFGYHLGVVNETLE-SISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS 135 (489)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 135 (489)
+++.++..++.....+.+| .+.+++|.+.++. |++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~ 79 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL 79 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence 4566777777788888999 8999999998888 999999999999999999999999999999999999999997777
Q ss_pred hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhH
Q 011308 136 AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVAT 215 (489)
Q Consensus 136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~ 215 (489)
.+++|++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+ ||+.|++.+
T Consensus 80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~ 158 (352)
T PF07690_consen 80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISA 158 (352)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHH
T ss_pred hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-ccccccccc
Confidence 7778888999999999999999999999999999999999999999999999999999999999998888 999999999
Q ss_pred HHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhh-hHHhhhccccccchhhh
Q 011308 216 IPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAV-KFSELISPRNFGVVFIG 293 (489)
Q Consensus 216 ~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 293 (489)
+..++..++. .+++++++....+++.++. ++++++.. .++.+++++.+|..+..
T Consensus 159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (352)
T PF07690_consen 159 ILSLIAAILFILFLPEPPPPRERESPKESE------------------------SKKPKPLKPGFKSLFKNPVLWILLIA 214 (352)
T ss_dssp HHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH
T ss_pred chhhhhhhhHhhhhhhcccccccccccccc------------------------cccccccccccccccccchhhhhhhh
Confidence 9888876642 3444443211111000000 00011111 25566666766633333
Q ss_pred HHHHHhhhhcchhHHHHhHHHH-HHhcCCC-CCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHH
Q 011308 294 STLFALQQLSGINAVFYFSSTV-FKNAGVP-SDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQ 368 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 368 (489)
.++..+ .......+.+.+ .+..+.+ ... .....++...++.++.+++.||+++|+..........+..+.+
T Consensus 215 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 290 (352)
T PF07690_consen 215 FFLFFF----VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGL 290 (352)
T ss_dssp HHHHHH----HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHH----HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence 333332 233355555554 4445555 233 3555667777789999999999998877776666665555544
Q ss_pred HHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Q 011308 369 AIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVG 436 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 436 (489)
.+.... .+....+....+.+.+.+.. .+....+..|..|++++|++.|+.+...++++.++|
T Consensus 291 ~~~~~~-----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 291 LLLPFS-----SSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CCSHHH-----CHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-----hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 433321 12223333444455544433 456677899999999999999999999999999987
No 64
>PRK10054 putative transporter; Provisional
Probab=100.00 E-value=5.9e-31 Score=249.44 Aligned_cols=366 Identities=16% Similarity=0.117 Sum_probs=261.0
Q ss_pred HHHHHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308 55 VAIISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 133 (489)
.+.+..++.........+.+|. +.+++|++..+. |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus 11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 4444556666666667776664 557899988877 9999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308 134 MSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV 213 (489)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~ 213 (489)
+.+++++++.++++|++.|.+.+...+....+..|.+|+++|++++++.....++|.+++|.+++.+.+ .+ ||..|++
T Consensus 89 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~ 166 (395)
T PRK10054 89 AIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWL 166 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHH
Confidence 999999999999999999988787888889999999999999999999999999999999999998875 56 9999998
Q ss_pred hHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308 214 ATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI 292 (489)
Q Consensus 214 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
.++..++..+.. +++||+++. +++ + +++..+.++.++++.++....
T Consensus 167 ~~~~~~i~~i~~~~~~~~~~~~---~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~ 213 (395)
T PRK10054 167 AAICSAFPLVFIQIWVQRSEKA---IAT--E----------------------------TGSVWSPSVLLQDKALLWFTC 213 (395)
T ss_pred HHHHHHHHHHHHHHHHhccccc---ccc--c----------------------------hhhhhhhhhhccCceehHHHH
Confidence 887776654443 335544310 000 0 000112255677888876665
Q ss_pred hHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 011308 293 GSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQA 369 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 369 (489)
..++..+.........+.+.+.. .+.+.+... .....++......+..+++.||.++|+.+..+..+..++...+.
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 292 (395)
T PRK10054 214 SGFLASFVSGAFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFI 292 (395)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence 55554443322223344444332 222332222 22223344445567778999999999988888777766665554
Q ss_pred HHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308 370 IAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL 449 (489)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~ 449 (489)
+.. ++.+.......+++.+... ..|....++.+..|++.++++.+..+ ...+|..+||.+.|.+.|+.|+.
T Consensus 293 ~~~-------~~~~~~~~~~~~~~~g~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~ 363 (395)
T PRK10054 293 FSG-------NSLLLWGMSAAVFTVGEII-YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPW 363 (395)
T ss_pred Hcc-------hHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChh
Confidence 321 1122233334444444332 23455667888889999999998765 67789999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 011308 450 ILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~ 467 (489)
..|.+.+.+..+..++..
T Consensus 364 ~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 364 SLFVILALAIVAAWLLML 381 (395)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 888887777666665554
No 65
>PRK11010 ampG muropeptide transporter; Validated
Probab=100.00 E-value=6.8e-31 Score=254.96 Aligned_cols=372 Identities=16% Similarity=0.148 Sum_probs=257.3
Q ss_pred HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-----CchhH-hhhhhHHH
Q 011308 55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-----GRRRA-FQLCALPM 128 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~ 128 (489)
.+++..+..+......++.+|.+.++.|.+.++. |.+ +.....+ ++++++|+++||+ ||||. +..+.+..
T Consensus 16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~ 91 (491)
T PRK11010 16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL 91 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence 3444455666677778888999999989887777 665 4444444 6899999999999 99985 66777777
Q ss_pred HHHHHHHhhh---hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc-cc
Q 011308 129 IIGASMSAIT---KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE-IL 204 (489)
Q Consensus 129 ~i~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~-~~ 204 (489)
+++..++++. ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+ ..
T Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~ 171 (491)
T PRK11010 92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL 171 (491)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7777777664 4788899999999999999999999999999999999999999999999999999999999988 45
Q ss_pred chHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308 205 GWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP 284 (489)
Q Consensus 205 ~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (489)
| ||..|++.++..++..+..+++||+++. ++++++ .++....++++.+++
T Consensus 172 G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~---~~~~~~--------------------------~~~~~~~~l~~~~~~ 221 (491)
T PRK11010 172 G-WQGMYWLMAALLIPCIIATLLAPEPTDT---IPVPKT--------------------------LEQAVVAPLRDFFGR 221 (491)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHhcCCCccc---cccccc--------------------------hhhhHHHHHHHHHcC
Confidence 7 9999999988877766655567776431 000000 000012245566766
Q ss_pred ccccchhhhHHHHHhhhhcchhHHHHhHHHH-HHhcCCCCCchhHH----HHHHHHHHHHHHHHHHhhhCCchhHHHHHH
Q 011308 285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTV-FKNAGVPSDSGNIC----VGIANLSGSIIAMILMDKLGRRVLLLGSFL 359 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 359 (489)
+..+......++...... ....+.+.+ .+..|.+....... ..++.+++.+++|+++||+++|+.+..+.+
T Consensus 222 ~~~~~~ll~~~l~~~~~~----~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~ 297 (491)
T PRK11010 222 NNAWLILLLIVLYKLGDA----FAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGI 297 (491)
T ss_pred cCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 665544444333332221 222223333 34567776653332 235778999999999999998887766555
Q ss_pred HHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLF 439 (489)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 439 (489)
+.++..+.+...... ..+.+.......+.....+.+. +...++..+..+++.+++..|+.+....+|..+++.+.
T Consensus 298 l~~l~~l~~~~l~~~----~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~ 372 (491)
T PRK11010 298 LQGVSNAGYWLLSIT----DKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVA 372 (491)
T ss_pred HHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333221111 1122222222222122222222 23355677888888899999999999999999999999
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhhhc
Q 011308 440 LRLLEQLGPLILYTIFGSFCFLAVIYVKRN 469 (489)
Q Consensus 440 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
|.+.|..||...|.+.+++++++.++....
T Consensus 373 G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 373 GWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988988888888887766554
No 66
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=100.00 E-value=2.5e-30 Score=245.31 Aligned_cols=354 Identities=14% Similarity=0.079 Sum_probs=254.3
Q ss_pred HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308 53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 132 (489)
+..++...+..++..+..++.+|.+++++|++..+. |++.+.+.+++.+++++.|++.||+|||+++..+.++++++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 456667777888888888999999999999988877 999999999999999999999999999999999999999999
Q ss_pred HHHhh---hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc------
Q 011308 133 SMSAI---TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI------ 203 (489)
Q Consensus 133 ~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~------ 203 (489)
+++.. .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.+++.+...
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~ 162 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS 162 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence 88654 468999999999999999999999999999999999999999999999999999999998766422
Q ss_pred --------------------cchHHHHHHHhHHHHHHHHHHhhc--ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHH
Q 011308 204 --------------------LGWWRICFWVATIPAAFLALFMEF--CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSM 261 (489)
Q Consensus 204 --------------------~~~Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (489)
.+ ||++|++.+++.++..+...+ .||.++ ++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~-w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~--------------------- 215 (410)
T TIGR00885 163 QDVLDKLSPEELSAIKHSDLAS-VQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD--------------------- 215 (410)
T ss_pred hhhhhhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc---------------------
Confidence 24 999999888876665544433 332110 00
Q ss_pred HHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcC--CCCCc---hhHHHHHHHHH
Q 011308 262 AELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAG--VPSDS---GNICVGIANLS 336 (489)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~ 336 (489)
+++.+...+.++++|++.++...+..+++.... .....+++.+..+.+ .+.+. ..........+
T Consensus 216 -------~~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e----~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~v 284 (410)
T TIGR00885 216 -------AKQISFSASLSRLARIRHYREGVIAQFFYVGVQ----IMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFI 284 (410)
T ss_pred -------cccccchhhHHHHHhChhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence 000011113345677777766555555544433 233355555555432 22221 23334466789
Q ss_pred HHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhh
Q 011308 337 GSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRI 416 (489)
Q Consensus 337 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 416 (489)
|+++++++.||+++|+.+.....+..+..++..+... ........+.+++.+..+ |..+....+..+++.
T Consensus 285 GR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~---------~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~ 354 (410)
T TIGR00885 285 SRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG---------HVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDT 354 (410)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhh
Confidence 9999999999999999887777766666555544221 112333444444444333 677778888888665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccchhhHHHHHH
Q 011308 417 RAKAMAVCMAVHWVINFFVGLLFLRLLEQL------GPLILYTIFGSF 458 (489)
Q Consensus 417 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~~~~ 458 (489)
+..+.++.... +|+.+.|++.|.+.|.. +.+..|++...+
T Consensus 355 ~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 355 KYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred hhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 54455544443 99999999999999964 355666654333
No 67
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.98 E-value=1.4e-30 Score=247.06 Aligned_cols=333 Identities=17% Similarity=0.182 Sum_probs=231.8
Q ss_pred cccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHH
Q 011308 65 YHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGM 144 (489)
Q Consensus 65 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l 144 (489)
+...+..|.+|.+.+++|+++++. +++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 82 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL 82 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence 345567789999999999988877 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308 145 LLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF 224 (489)
Q Consensus 145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~ 224 (489)
++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++.++..++..+.
T Consensus 83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 161 (377)
T PRK11102 83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAAL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998888 999999888777666544
Q ss_pred -hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhc
Q 011308 225 -MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLS 303 (489)
Q Consensus 225 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (489)
.+++||+++. +++. +.+.++...++++.++++..+...+...+...
T Consensus 162 ~~~~~~~~~~~---~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 208 (377)
T PRK11102 162 VFFFIPETLPK---ERRQ--------------------------PFHLRTTIRNFASLFRHKRVLGYMLASGFSFA---- 208 (377)
T ss_pred HHHhCCccCcc---cccC--------------------------CCChHHHHHHHHHHHcChHHHHHHHHHHHHHH----
Confidence 3456665421 0000 00000112234556666665544333322221
Q ss_pred chhHHHHhHHHHH-HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308 304 GINAVFYFSSTVF-KNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS 379 (489)
Q Consensus 304 ~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
.......+.+.++ +..+.+... ......++.+++.++.+++.||+++|+.+..+..+..+..+.+...... .
T Consensus 209 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----~ 284 (377)
T PRK11102 209 GMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL----D 284 (377)
T ss_pred HHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence 1222222233333 335665544 4555667788899999999999999998887776544333222222110 1
Q ss_pred cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHH-HHHHHHHHHH
Q 011308 380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHW-VINFFVGLLF 439 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~ 439 (489)
...+.......++..+.+.. .+.......|..| +.++++.++.+.... ++..+++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 285 LGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222232333333222 2233345677767 779999999887654 4455555543
No 68
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.98 E-value=9.3e-31 Score=250.05 Aligned_cols=358 Identities=19% Similarity=0.187 Sum_probs=237.2
Q ss_pred hhhccccccccchhhhhhhcccccccchHHHHHHHH--H---HHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH
Q 011308 61 FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVST--C---LGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS 135 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~--~---~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 135 (489)
+.+.+++..++...+.+.+++..+.++.+.+.+.+. + .++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~ 82 (394)
T TIGR00883 3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI 82 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455667777777778777776532222222444432 2 33344689999999999999999999999999999999
Q ss_pred hhhhhHH--------HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc------
Q 011308 136 AITKNLW--------GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK------ 201 (489)
Q Consensus 136 ~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~------ 201 (489)
+++++++ .++++|+++|++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~ 162 (394)
T TIGR00883 83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD 162 (394)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 9998875 47889999999999999999999999999999999999999999999999998876543
Q ss_pred --cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHH
Q 011308 202 --EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFS 279 (489)
Q Consensus 202 --~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (489)
+..+ ||+.|++.++..++..+.....+|++++..+++ ++++...+.+
T Consensus 163 ~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~ 211 (394)
T TIGR00883 163 ALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE------------------------------KHKKKRGPIR 211 (394)
T ss_pred Hhhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh------------------------------ccccccCCHH
Confidence 2446 999999877776665555455676654211100 0011122334
Q ss_pred hhhcccc--ccchhhhHHHHHhhhhcchhHHHHhHHHHH-HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchh
Q 011308 280 ELISPRN--FGVVFIGSTLFALQQLSGINAVFYFSSTVF-KNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVL 353 (489)
Q Consensus 280 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 353 (489)
+.++++. ++......++. .........+.+.+. +..+.+... ......+...++.++.+++.||++||+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~ 287 (394)
T TIGR00883 212 ETLTKHRKPFLLGLGLVIAT----TTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV 287 (394)
T ss_pred HHHHhchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 4454443 22222222221 223334445566666 445555544 4445567888999999999999999987
Q ss_pred HHHHHHHHHHHH-HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHH-HHHHHHH
Q 011308 354 LLGSFLGMAIAM-GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVC-MAVHWVI 431 (489)
Q Consensus 354 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g 431 (489)
+.....+..+.. ........ ..+.+.......+.+.+.+.. .+....++.|.+|++.|+++.++. +....+|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g 361 (394)
T TIGR00883 288 LIIFTVLAALLAVPLLMALLD-----SGSFTLFFFLVLGLALIGGMY-TGPMGSFLPELFPTEVRYTGASLAYNLAGAIF 361 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCCccceeeEeeehhHhHHHHH
Confidence 765444333322 22111110 112222333334444444333 345567889999999999999985 4555678
Q ss_pred HHHHHHHHHHHHHHhc-cchhhHHHHHHH
Q 011308 432 NFFVGLLFLRLLEQLG-PLILYTIFGSFC 459 (489)
Q Consensus 432 ~~~~~~~~g~l~~~~g-~~~~~~~~~~~~ 459 (489)
..++|.+.|.+.++.| +...++...+++
T Consensus 362 ~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 362 GGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred hhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 8899999999999988 665555544443
No 69
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.98 E-value=2e-30 Score=246.19 Aligned_cols=359 Identities=14% Similarity=0.109 Sum_probs=247.6
Q ss_pred HHhhhhccccccccchhh-hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh
Q 011308 58 ISSFLFGYHLGVVNETLE-SISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA 136 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 136 (489)
...++.........+.++ .+.+++|++..+. |++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~ 94 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA 94 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 444455555555566655 4578889988777 9999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHH
Q 011308 137 ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATI 216 (489)
Q Consensus 137 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~ 216 (489)
++++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+. ..+ ||+.|++.++
T Consensus 95 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~ 172 (400)
T PRK11646 95 IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAV 172 (400)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999998 567 9999999887
Q ss_pred HHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHH
Q 011308 217 PAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGST 295 (489)
Q Consensus 217 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (489)
..++..+. .++.||.+. +++ +++....++++++++.++.......
T Consensus 173 ~~~~~~i~~~~~~~~~~~----~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (400)
T PRK11646 173 LFVLAAAFNAWLLPAYKL----STV------------------------------RTPVREGMTRVLRDKRFVTYVLTLT 218 (400)
T ss_pred HHHHHHHHHHHhCCcccc----ccc------------------------------chhhHHHHHHHHcCchHHHHHHHHH
Confidence 76665443 333444210 000 0001123456667666554333322
Q ss_pred HHHhhhhcchhHHHHhHHHHHHhcCCCCCchh---HHHHHHHHHHHHHHHHHHh-hhCCchhHHHHHHHHHHHHHHHHHH
Q 011308 296 LFALQQLSGINAVFYFSSTVFKNAGVPSDSGN---ICVGIANLSGSIIAMILMD-KLGRRVLLLGSFLGMAIAMGVQAIA 371 (489)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (489)
..... ......+.|.+.++.+.+..... ...++....+....+++.| |++.++.+..+..+..++.+++...
T Consensus 219 ~~~~~----~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~ 294 (400)
T PRK11646 219 GYYML----AVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV 294 (400)
T ss_pred HHHHH----HHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Confidence 22211 11223455666666544444332 2333344444444455554 4665665666666666665544433
Q ss_pred hhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Q 011308 372 ATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG---- 447 (489)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---- 447 (489)
.. .+.......+++.+.+. ..|...+++.+..|++++|+++|+.+...++|..++|.+.|.+.|..+
T Consensus 295 ~~--------~~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~ 365 (400)
T PRK11646 295 SN--------LQQLFTLICLFYIGSII-AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQ 365 (400)
T ss_pred hh--------HHHHHHHHHHHHHHHHH-HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCC
Confidence 21 12222223333333332 234556678899999999999999999999999999999999998753
Q ss_pred cchhhHHHHHHHHHHHHHhh
Q 011308 448 PLILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~ 467 (489)
....+...+.+++++.+...
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~ 385 (400)
T PRK11646 366 PELPWMMLGIIGLITLLALY 385 (400)
T ss_pred cchHHHHHHHHHHHHHHHHH
Confidence 34555555555555554433
No 70
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.98 E-value=9.1e-30 Score=240.87 Aligned_cols=359 Identities=13% Similarity=0.074 Sum_probs=260.9
Q ss_pred HHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHh----hhhhHHHHHH
Q 011308 56 AIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAF----QLCALPMIIG 131 (489)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~i~ 131 (489)
+.+..+......+...|.+|.+.+|+|.+.++. |++.+++.+...++++++|+++||+|||+.. ..+..+..+
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~- 85 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA- 85 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence 445566666777888999999999999988888 9999999999999999999999999985433 222222222
Q ss_pred HHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHH
Q 011308 132 ASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICF 211 (489)
Q Consensus 132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f 211 (489)
..+..+++++.+++.|+++|.+.+...|...++..++ +++|++..+....+.++|.+++|++++.+.+..| ||..|
T Consensus 86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f 161 (382)
T TIGR00902 86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNIL 161 (382)
T ss_pred -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHH
Confidence 2444678999999999999999888889988887765 5678999999999999999999999999999999 99999
Q ss_pred HHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchh
Q 011308 212 WVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVF 291 (489)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (489)
++.++...+.. ..+.++|+++ ++++. + +++.+...+.++++|+|+++...
T Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~---~~~~~-~-------------------------~~~~~~~~~~~~~l~~~~~~~~l 211 (382)
T TIGR00902 162 AILTAGLAFML-IGFLIKPTIP---PKDAI-P-------------------------EDESQGDSAFIALLKNPMNLRFL 211 (382)
T ss_pred HHHHHHHHHHH-HHHHcCCCCC---CCccc-c-------------------------ccccccchhHHHHHcChHHHHHH
Confidence 88765533332 2233333321 00000 0 00011122456788888887776
Q ss_pred hhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHH
Q 011308 292 IGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSG---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQ 368 (489)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~ 368 (489)
+..++.... ......+.+.++++.|.+.... .....++.+++.++.+++.||+++|+.+..+.+...+....+
T Consensus 212 ~~~~l~~~~----~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~ 287 (382)
T TIGR00902 212 AAVCLIQGA----HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII 287 (382)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence 665555443 3334445566666777777653 334456777888889999999999999998888888887776
Q ss_pred HHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Q 011308 369 AIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMA-VHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g 447 (489)
.+..+ .+..+....+.+..++.... ....++++. |+++++++.++++. ...+|..++|.+.|.+.|+.|
T Consensus 288 ~~~~~--------~~~~~~~q~l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 288 GAIEA--------FPLIFLLQILHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HhHhh--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 65432 23345556666666665443 345577887 88899999999874 567899999999999999998
Q ss_pred cchhhHHHHHHHHHHHHHh
Q 011308 448 PLILYTIFGSFCFLAVIYV 466 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~ 466 (489)
+ ..|...+++.+++.++.
T Consensus 358 ~-~~~~~~~~~~~~~~~~~ 375 (382)
T TIGR00902 358 A-GTFVFMAIIAAAAFFLI 375 (382)
T ss_pred H-HHHHHHHHHHHHHHHHH
Confidence 6 67888888777665443
No 71
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.98 E-value=5.9e-30 Score=243.84 Aligned_cols=350 Identities=16% Similarity=0.153 Sum_probs=242.9
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
.++.+....+..++..+......+.+|.+.+++|.++++. +++.+.+.+++.++++++|+++||+|||+++..+.++.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~ 83 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF 83 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence 3445555555555666777778889999999999998887 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308 129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR 208 (489)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr 208 (489)
.++.+++.++++++.+++.|++.|++.+...+....+..|.+++++|+++.++.+.+..+|..++|.+++.+.+..+ ||
T Consensus 84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~ 162 (394)
T PRK11652 84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR 162 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence 99999999999999999999999999888888888899999999999999999999999999999999999988888 99
Q ss_pred HHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccc
Q 011308 209 ICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNF 287 (489)
Q Consensus 209 ~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (489)
+.|++.++..++..+. .++.||+++. +++ +++....+++.++++.+
T Consensus 163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------------------~~~~~~~~~~~~~~~~~ 209 (394)
T PRK11652 163 ACYLFLLLLGAGVTFSMARWMPETRPA---DAR------------------------------RTRVLASYRTLLSNRRF 209 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCccCcc---ccc------------------------------hhHHHHHHHHHHcChHH
Confidence 9999988776655443 4456775421 000 00012334556666666
Q ss_pred cchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308 288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAI 363 (489)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 363 (489)
+......+.... .......+.+.++++ .+.+... ......++.+++.++.+++.||.+++. ........+
T Consensus 210 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~~~~~~~~~ 283 (394)
T PRK11652 210 NCYLLMLIGTLA----GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLL 283 (394)
T ss_pred HHHHHHHHHHHH----HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 544433322221 222223333444444 5655544 233344566677777777777776322 222222222
Q ss_pred HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 364 AMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (489)
+.+.+...... ...+.+.......+.+.+.+. ..|....+..|..| +++|++.++.+....+|+.+++.+.+.+.
T Consensus 284 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 284 AGLLMWIPGWF---GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred HHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 22222111110 011222333344444444443 33555556778877 57899999999999999999999988765
Q ss_pred HH
Q 011308 444 EQ 445 (489)
Q Consensus 444 ~~ 445 (489)
+.
T Consensus 359 ~~ 360 (394)
T PRK11652 359 QT 360 (394)
T ss_pred CC
Confidence 44
No 72
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.9e-31 Score=248.02 Aligned_cols=279 Identities=16% Similarity=0.189 Sum_probs=216.5
Q ss_pred hhHHHHHHHHhhhhcccccccc-chhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 50 LPHVLVAIISSFLFGYHLGVVN-ETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
+.++..++..++....+...++ +.+-.+.+|.+....+. +++.+++.++++++++++|.+.||++..+.+....+.+
T Consensus 44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w 121 (495)
T KOG2533|consen 44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW 121 (495)
T ss_pred HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence 4555566667777777765543 34556778988888887 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc------c
Q 011308 129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK------E 202 (489)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~------~ 202 (489)
++..++....+|++.+++.|++.|+.++..+|....+++.|+.++||++.++++.+..++|.++|.+++..+. .
T Consensus 122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 9999999889999999999999999999999999999999999999999999999999999999999998863 3
Q ss_pred ccchHHHHHHHhHHHHHHHHHHh-hcccCChh--HHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHH
Q 011308 203 ILGWWRICFWVATIPAAFLALFM-EFCAESPH--WLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFS 279 (489)
Q Consensus 203 ~~~~Wr~~f~~~~~~~~~~~~~~-~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (489)
..| |||.|++.++++++..++. +++|+.|. +...+.++.-..+.. ++.......++.+...++
T Consensus 202 ~~g-W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 267 (495)
T KOG2533|consen 202 LAG-WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERL-------------RESPSGGIENKFKWKGFK 267 (495)
T ss_pred cCC-ceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHH-------------HhccCCCcccccCHHHHH
Confidence 445 9999999999998887665 45899886 221111111000000 011111111225667888
Q ss_pred hhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCC---CCCchhHHHHHHHHHHHHHHHHHHhhh
Q 011308 280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGV---PSDSGNICVGIANLSGSIIAMILMDKL 348 (489)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~ 348 (489)
+.++++..|...+..++.... .+.+.+++|.++++ .++ ++..+.++..++++++.+++|+++||.
T Consensus 268 ~a~~dp~vw~~~l~~~~~~lv----~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 268 EALKDPGVWPFSLCYFFLKLV----NYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred HHHhchhHHHHHHHHHHHhhc----cccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence 999999999887777766664 44455566666655 223 344488889999999999999999995
No 73
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.97 E-value=8.3e-30 Score=239.28 Aligned_cols=332 Identities=15% Similarity=0.109 Sum_probs=236.3
Q ss_pred cccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHH
Q 011308 65 YHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGM 144 (489)
Q Consensus 65 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l 144 (489)
......++.+|.+.+|+|.+.++. |++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+.+ .+++++.+
T Consensus 14 ~~~~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l 90 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL 90 (355)
T ss_pred CccccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence 334567889999999999998887 999999999999999999999999999999999999888888877 77899999
Q ss_pred HHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch-HHHHHHHhHHHHHHHHH
Q 011308 145 LLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW-WRICFWVATIPAAFLAL 223 (489)
Q Consensus 145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-Wr~~f~~~~~~~~~~~~ 223 (489)
++.|++.|++.+...+....++.|++| ++|++++++.+.+.++|..+++.+++.+.+..+. ||+.|...++..++...
T Consensus 91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~ 169 (355)
T TIGR00896 91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL 169 (355)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999888888888999986 6899999999999999999999998888776543 99998877655443322
Q ss_pred HhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhc
Q 011308 224 FMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLS 303 (489)
Q Consensus 224 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (489)
.++|+.++ +.+ ++++......++++|++.++...+...+...
T Consensus 170 --~~~~~~~~----~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 211 (355)
T TIGR00896 170 --AWIPQVRR----RVA----------------------------ANQTTTRLTPVRIWRSPLAWQVTVFFGLQSG---- 211 (355)
T ss_pred --HHhhhhcc----ccC----------------------------CCCCCCCCCCchhhcCHhHHHHHHHHHHHHH----
Confidence 22333221 000 0000011223456666666544333333222
Q ss_pred chhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhC-CchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308 304 GINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLG-RRVLLLGSFLGMAIAMGVQAIAATSFVSSS 379 (489)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
.+.....++|.++++.+.+... ......++.++++++.|++.||++ ||+.+..+..+..++.+.+.+....
T Consensus 212 ~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 286 (355)
T TIGR00896 212 LYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH----- 286 (355)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh-----
Confidence 2334445667777766766544 555667889999999999999995 5666666666666665555443211
Q ss_pred cchhHHHHHHHHHHHHHhcCCCcchhhhhc-ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011308 380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLS-EIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGP 448 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 448 (489)
. ......+++.+.+.. .+....... +..++++++...++.+...+++..++|.+.|.+.|+.|.
T Consensus 287 -~---~~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 287 -G---LWAWALVLGLGQGGA-FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred -H---HHHHHHHHHHhhhhH-hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 111233344443322 233333343 444567789999999999999999999999999998873
No 74
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.97 E-value=1.5e-29 Score=241.00 Aligned_cols=374 Identities=14% Similarity=0.122 Sum_probs=252.1
Q ss_pred HHHhhhhccccccc-cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCc-hhHhhhhhHHHHHHHHH
Q 011308 57 IISSFLFGYHLGVV-NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGR-RRAFQLCALPMIIGASM 134 (489)
Q Consensus 57 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~ 134 (489)
++..+..+...... ++..+.+.+++|.+.++. |++.+++.++..++++++|+++||+|| |+++.++.++.+++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~ 85 (418)
T TIGR00889 8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF 85 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 34445555555555 445566677899988887 999999999999999999999999965 77888888888888888
Q ss_pred HhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhc--------CCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308 135 SAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEV--------SPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW 206 (489)
Q Consensus 135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~ 206 (489)
..+.++++.+++.|++.|++.+...+...++..++ .....|.+..| .+|.++++.+++.+.....
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~- 158 (418)
T TIGR00889 86 AAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS- 158 (418)
T ss_pred HHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch-
Confidence 88999999999999999998877777666554222 22233444444 3577777777776643333
Q ss_pred HHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc
Q 011308 207 WRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN 286 (489)
Q Consensus 207 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (489)
|+ +|++.++..++..+..+++||+|+. +++++. ..++....+.++++|++.
T Consensus 159 ~~-~f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~-------------------------~~~~~~~~~~~~~~k~~~ 209 (418)
T TIGR00889 159 NI-QLYITAGSSALLGVFALTLPDIPVA---KSTAKM-------------------------SIKVMLGLDAFILFKNKR 209 (418)
T ss_pred hH-HHHHHHHHHHHHHHHHhcCCCCCCC---cccccc-------------------------CHHHHhhhhHHHHhcCCC
Confidence 55 3555565555555555667887531 100000 000001123455778888
Q ss_pred ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCC--------C---chhHHHHHHHHHHHHHHHHHHhhhCCchhHH
Q 011308 287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPS--------D---SGNICVGIANLSGSIIAMILMDKLGRRVLLL 355 (489)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~ 355 (489)
++..++..++.... ......+.+.+.++.+.+. . .......+..+++.+..+++.||+++|+.+.
T Consensus 210 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~ 285 (418)
T TIGR00889 210 MAIFFFFSMLLGAP----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVML 285 (418)
T ss_pred eeeHHHHHHHHHhH----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 77666655554332 2233344555555544332 2 2445555677888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHH-HHHHHHHHH
Q 011308 356 GSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCM-AVHWVINFF 434 (489)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~ 434 (489)
.+.++..++..++...... ....+..+....+.+.+.+.. .+....++.|.+|++.|++++|+.+ ....+|..+
T Consensus 286 ~~~~~~~v~~~l~~~~~~~----~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i 360 (418)
T TIGR00889 286 LSLVAWALRFGFFAYGDPE----YFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL 360 (418)
T ss_pred HHHHHHHHHHHHHHHcCcc----hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence 8888777766555442110 011122333344444444432 3454567899999999999999997 567899999
Q ss_pred HHHHHHHHHHHh------ccchhhHHHHHHHHHHHHHhhhcccCCCCCC
Q 011308 435 VGLLFLRLLEQL------GPLILYTIFGSFCFLAVIYVKRNVMETKGKT 477 (489)
Q Consensus 435 ~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (489)
+|.+.|.+.|.. ||+..|.+.+++.+++.++.+++.+|++++-
T Consensus 361 Gp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~ 409 (418)
T TIGR00889 361 GYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI 409 (418)
T ss_pred HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 999999999984 4788898888888888888887788776543
No 75
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.97 E-value=2e-29 Score=239.43 Aligned_cols=358 Identities=14% Similarity=0.132 Sum_probs=231.4
Q ss_pred HHHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHH-HHHHHHHHHHHhhcccCchhHh-hhhhHHHHHHHH
Q 011308 57 IISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLG-GAFVGSMFSGWIADGIGRRRAF-QLCALPMIIGAS 133 (489)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~i~~~ 133 (489)
.+..++.........|.+|. +.+|+|.+.++. |++.+...+ ++.++++++++ +||+||||.+ ..+.++.+++..
T Consensus 21 ~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~ 97 (393)
T PRK15011 21 LIVAFLTGIAGALQTPTLSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT 97 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence 33456666666667777765 578899988877 998776655 66666655666 9999999875 556676778888
Q ss_pred HHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccch--hhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHH
Q 011308 134 MSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVR--GAYGSSTQIAACLGILVALFVGLPAKEILGWWRICF 211 (489)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f 211 (489)
+.+++++++.+++.+.+.|...+...|....++.|+.++++| +...++.+.+.++|.+++|++++.+.+..| ||..|
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f 176 (393)
T PRK15011 98 LFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMY 176 (393)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHH
Confidence 888999999887665555444467788888888988876655 345578888999999999999999998888 99999
Q ss_pred HHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc-ccccc
Q 011308 212 WVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP-RNFGV 289 (489)
Q Consensus 212 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 289 (489)
++.++..++..+.. +++||+++. +++.+ ++.+ ...++ +..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------------------~~~~-------~~~~~~~~~~~ 220 (393)
T PRK15011 177 LSAAVAFIVCGVMVWLFLPSMRKE---LPLAT--------------------------GTLE-------APRRNRRDTLL 220 (393)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCC---Ccccc--------------------------cccc-------ccccccccHHH
Confidence 99888776665554 447776420 00000 0000 00011 11111
Q ss_pred hhhhHHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 011308 290 VFIGSTLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAM 365 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 365 (489)
.+........ .......+.|.+++ ..+.+... ......+..+++.++.|+++||+++|+.+..+.....+..
T Consensus 221 ~~~~~~~~~~----~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~ 296 (393)
T PRK15011 221 LFVICTLMWG----TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFY 296 (393)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 1111111111 22223344555553 35555444 2333345567788999999999999987766655444433
Q ss_pred HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 366 GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (489)
..+.... +.+..+....+.+...+... +....+..|..|+ +++++.++++...++|..++|.+.|.+.+.
T Consensus 297 ~~~~~~~--------~~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~ 366 (393)
T PRK15011 297 AGMLMAH--------SPAILLGLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI 366 (393)
T ss_pred HHHHHHh--------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 11222222222222222221 1234467788885 599999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHhhh
Q 011308 446 LGPLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 446 ~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
.|++..+.+.+++++++.+..++
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 367 WNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Confidence 99998888877777776665553
No 76
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.97 E-value=4.9e-29 Score=239.30 Aligned_cols=375 Identities=16% Similarity=0.110 Sum_probs=236.7
Q ss_pred Hhhhhccccccccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh-
Q 011308 59 SSFLFGYHLGVVNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA- 136 (489)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~- 136 (489)
..++..+..+...+.+|.+. +++|++..+. |++.+++.+++.++++++|+++||+|||++++.+..+.+++.....
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 95 (420)
T PRK09528 18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFI 95 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 44444444455666666554 4589988877 9999999999999999999999999999999887666555433221
Q ss_pred --hhh-----hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308 137 --ITK-----NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI 209 (489)
Q Consensus 137 --~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~ 209 (489)
.++ .....++++++.|.+.....+....+..+. .+++++.++......++|..+++.+++.+.+. + |++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~ 171 (420)
T PRK09528 96 YVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-PQI 171 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-chH
Confidence 111 111122334444443333333333333222 34567788888888999999999999988764 5 899
Q ss_pred HHHHhHHHHHHHHHHhhccc-CChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccccc
Q 011308 210 CFWVATIPAAFLALFMEFCA-ESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFG 288 (489)
Q Consensus 210 ~f~~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (489)
.|++.++..++..+..++.+ |+++. ..+ + ++ +.+++++......++.+|++.++
T Consensus 172 ~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-~~----------------------~~~~~~~~~~~~~~~~l~~~~~~ 226 (420)
T PRK09528 172 NFWLGSGSALILLVLLFFAKPDAPST-AKV-A-NA----------------------LGANASAVSLKDALALLKLPKFW 226 (420)
T ss_pred hHHHHHHHHHHHHHHHhcccccccch-hhh-c-cc----------------------hhcccccccHHHHHHHccCCCeE
Confidence 99998888777666655543 33220 000 0 00 00000111223355677888777
Q ss_pred chhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 011308 289 VVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAM 365 (489)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 365 (489)
...+................+.|......+.+.+... ......+...++.++.|++.||+++|+.+..+..+..++.
T Consensus 227 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~ 306 (420)
T PRK09528 227 FLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRI 306 (420)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence 6554443333322222233445554444433444333 3444556777899999999999999999888777777766
Q ss_pred HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 011308 366 GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV-CMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~ 444 (489)
.++.+..+ .+..+....+.+...+.. .+....++.|.+|++.+++..+. .+....+|..++|.+.|.+.|
T Consensus 307 ~l~~~~~~--------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 307 IGSGFATG--------PLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred HHHHhccc--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 65544321 222333333333333222 12334567788898988888766 677889999999999999999
Q ss_pred HhccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308 445 QLGPLILYTIFGSFCFLAVIYVKRNVMET 473 (489)
Q Consensus 445 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (489)
..||+..|.+.+++.++..++.+...++.
T Consensus 378 ~~G~~~~f~~~~~~~~i~~~~~~~~~~~~ 406 (420)
T PRK09528 378 SIGFQGTYLILGGIVLLFTLISVFTLSGD 406 (420)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999998888877776666554443
No 77
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.97 E-value=7.2e-30 Score=241.23 Aligned_cols=343 Identities=20% Similarity=0.166 Sum_probs=230.5
Q ss_pred HHHHHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308 55 VAIISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 133 (489)
..+++.+..........+..|. +++++|++..+. +++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 4556666667777788999995 999999998887 9999999999999999999999999999999999999999999
Q ss_pred HHhhhh-hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc----------
Q 011308 134 MSAITK-NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE---------- 202 (489)
Q Consensus 134 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~---------- 202 (489)
++++++ +++.+++.|+++|++.+. .+....++.|++|+++|++++++.....++|..+++.+++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~ 161 (366)
T TIGR00886 83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA 161 (366)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999 999999999999998654 56678899999999999999999997777777777777665543
Q ss_pred ccchHHHHH-HHhHHHHHHHHH-HhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHh
Q 011308 203 ILGWWRICF-WVATIPAAFLAL-FMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSE 280 (489)
Q Consensus 203 ~~~~Wr~~f-~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (489)
..+ ||+.| +..++...+..+ ...+.+|+|+. +++.++.+. + +. . ...+++.....++
T Consensus 162 ~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~---~~-----------~-~~~~~~~~~~~~~ 220 (366)
T TIGR00886 162 HLA-WGWAFVIVPAGILLLPALLIFFVGADTPPG---KPATGKLSF--K---GA-----------R-WSVGTGALGDQLK 220 (366)
T ss_pred ccc-ccchhHHHHHHHHHHHHHHHHHhcccCCcc---cccchhccc--c---cc-----------c-ccccchhHHHHHH
Confidence 235 99999 443444443333 33445665531 110000000 0 00 0 0000111124456
Q ss_pred hhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHH
Q 011308 281 LISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLG 356 (489)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 356 (489)
.++++.++...+...+.... ......+.+.++++ .+.+... ......+..++++++.|++.||+++|+....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~ 296 (366)
T TIGR00886 221 VFRDRHTWILALLYSVTFGS----FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLM 296 (366)
T ss_pred HHhccchhhHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHH
Confidence 67777776555544443332 22333444545543 4555443 4455667788999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHH
Q 011308 357 SFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVI 431 (489)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 431 (489)
+......+..++.+.... ..+.+.......+.....+.+.. ..+.+..+..| +++|+++|+.+...++|
T Consensus 297 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 297 SFLGVAMGAFLVVLGLVS----PLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 666555554444332210 00222233333344444444333 44556778877 67999999999988765
No 78
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.97 E-value=3.4e-28 Score=230.24 Aligned_cols=355 Identities=14% Similarity=0.114 Sum_probs=246.1
Q ss_pred hhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCch----hHhhhhhHHHHHHHHHH
Q 011308 60 SFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR----RAFQLCALPMIIGASMS 135 (489)
Q Consensus 60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~i~~~~~ 135 (489)
++......+...|.+|.+.+|+|.+.++. |++.+++.++..++++++|+++||+||| +.+.++..+. .....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence 34444556778999999999999988887 9999999999999999999999999994 3333222222 22333
Q ss_pred hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhH
Q 011308 136 AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVAT 215 (489)
Q Consensus 136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~ 215 (489)
..+++++.+++.|++.|++.+...+...+++.++ +++|+++.+......++|.++||++++.+.++.+ ||..|++.+
T Consensus 89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~ 165 (382)
T PRK11128 89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILT 165 (382)
T ss_pred HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence 4468899999999999999888888888888876 4567888888999999999999999999999988 999999877
Q ss_pred HHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHH
Q 011308 216 IPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGST 295 (489)
Q Consensus 216 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (489)
+..++..+...+.||+++ +++. +++.++...++++++|++.++......+
T Consensus 166 ~~~~~~~~~~~~~~~~~~----~~~~--------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 215 (382)
T PRK11128 166 AGVASMLLGQLLRPTIMP----QGES--------------------------RQQESAGWPAWKALLKEPTVWRFLLCVS 215 (382)
T ss_pred HHHHHHHHHHHccCCCCC----cccc--------------------------ccccccccchHHHHHcChhHHHHHHHHH
Confidence 655544443333444321 0000 0000111235678888888877666555
Q ss_pred HHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHh
Q 011308 296 LFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAA 372 (489)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (489)
+..... .....+.+.+.++.|.+... ......+..++..++.+++.||+++|+.+..+.+..+++.+++....
T Consensus 216 l~~~~~----~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~ 291 (382)
T PRK11128 216 LLQGSH----AAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT 291 (382)
T ss_pred HHHHHh----HhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 544432 22333445555666776655 33344466677778899999999999998888877777665544322
Q ss_pred hcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccchh
Q 011308 373 TSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAV-HWVINFFVGLLFLRLLEQLGPLIL 451 (489)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~ 451 (489)
+.+..+....+.+.+++.. .+....+..+. +++++++..++.+.. ..+|..++|.+.|.+.|..|+ ..
T Consensus 292 --------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~ 360 (382)
T PRK11128 292 --------ALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GV 360 (382)
T ss_pred --------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HH
Confidence 2233444555555555543 23444466666 556678999988744 566779999999999999887 46
Q ss_pred hHHHHHHHHHHHHHh
Q 011308 452 YTIFGSFCFLAVIYV 466 (489)
Q Consensus 452 ~~~~~~~~~~~~~~~ 466 (489)
++..+++.+++.++.
T Consensus 361 ~~~~~~~~~~~~~~~ 375 (382)
T PRK11128 361 FWVMALVALPALFIR 375 (382)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666554443
No 79
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.97 E-value=2.8e-28 Score=232.47 Aligned_cols=366 Identities=18% Similarity=0.113 Sum_probs=251.9
Q ss_pred HHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-----Cchh-HhhhhhHHHHH
Q 011308 57 IISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-----GRRR-AFQLCALPMII 130 (489)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~i 130 (489)
...++..+.........+|.+.++.|++.++. |++..+... .+.++++|+++||+ |||| .+..+.++.++
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 34556677778888889999999999999888 998777765 58899999999999 8876 78888888888
Q ss_pred HHHHHhhh---hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc-cch
Q 011308 131 GASMSAIT---KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI-LGW 206 (489)
Q Consensus 131 ~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-~~~ 206 (489)
+..+.++. .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .+
T Consensus 81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g- 159 (402)
T PRK11902 81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG- 159 (402)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-
Confidence 87777776 45778888888888888889999999999999999999999999999999999999999888875 46
Q ss_pred HHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc
Q 011308 207 WRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN 286 (489)
Q Consensus 207 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (489)
||..|++.++..++..+..++.||+++. ++++++. +++....+++++++|.
T Consensus 160 w~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~--------------------------~~~~~~~~~~l~~~~~ 210 (402)
T PRK11902 160 WGNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSL--------------------------GEAVVGPLRDFFSRRG 210 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccc---ccccchh--------------------------HHHHHHHHHHHHhCcC
Confidence 9999999888776665555556765431 1000000 0012234667888888
Q ss_pred ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHH---H-HHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308 287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICV---G-IANLSGSIIAMILMDKLGRRVLLLGSFLGMA 362 (489)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 362 (489)
++..+...++......... ....+.+.++.|.+........ + ++.+++.++.+++.||+++|+.+..+..+..
T Consensus 211 ~~~~l~~~~l~~~~~~~~~---~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~ 287 (402)
T PRK11902 211 AWALLLLIVLYKLGDAFAG---SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQA 287 (402)
T ss_pred HHHHHHHHHHHHhHHHHHH---HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7766655444443222111 1222334455677766543333 2 3467899999999999999888776666555
Q ss_pred HHHHHHHHHhhcccCCCcchhHHHHHHHH----HHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308 363 IAMGVQAIAATSFVSSSGALSLSLGGMLL----FVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL 438 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 438 (489)
+..+.+...... ..+.+.......+ .+...+ ...+....++++.+|.+. .++.+....++..+++.+
T Consensus 288 l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~ 358 (402)
T PRK11902 288 VSNLGYWVLAVT----PKHLWTMALAIGIENLCGGMGTA-AFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPT 358 (402)
T ss_pred HHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHH
Confidence 444333222111 0112222222221 111111 122344556667766554 455666667777777788
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308 439 FLRLLEQLGPLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 439 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
.|.+.|..|+...|.+.+++++++.++.+.
T Consensus 359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 359 SGYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888887666543
No 80
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.7e-30 Score=226.22 Aligned_cols=346 Identities=15% Similarity=0.083 Sum_probs=248.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhH
Q 011308 83 FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVA 162 (489)
Q Consensus 83 ~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~ 162 (489)
.+.++.+.|++.+++.+.+.+.+++.|.+.||+|+|..+++|++.+..+++++++.+++++++++|.+||+|.+...+..
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 33444556999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcc-chhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCCh
Q 011308 163 ALYVSEVSPAY-VRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRG 241 (489)
Q Consensus 163 ~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 241 (489)
.++++|.+|++ +|++++|+.-.+.++|..+||++||.+.+..| .+.+|++.+++.++-..+.+++-|+.+
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~-------- 251 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTE-------- 251 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccc--------
Confidence 99999999865 57999999999999999999999999999999 899999999998888777666443321
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCC
Q 011308 242 AEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGV 321 (489)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (489)
.+++...+..+++++++++..+................--.++.|...-+...++
T Consensus 252 -------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w 306 (464)
T KOG3764|consen 252 -------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGW 306 (464)
T ss_pred -------------------------cCccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCc
Confidence 0011223344577788888776554443333322111222222222222222333
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhCCchhH--HHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcC
Q 011308 322 PSDSGNICVGIANLSGSIIAMILMDKLGRRVLL--LGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLG 399 (489)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (489)
..+......++...++..+.|.+.||++..+.+ ..+.+..+.......+.... ...++......+.+......
T Consensus 307 ~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~-----~~L~vp~~~l~~~i~~~das 381 (464)
T KOG3764|consen 307 EVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI-----AQLWVPNFGLGFGIGLADAS 381 (464)
T ss_pred ceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH-----HHHhhhhHHHHHHHHHHHHH
Confidence 445577778889999999999999999943332 33333333333222222211 11222222222322223333
Q ss_pred CCcchhhhhcccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308 400 AGPVPSLLLSEIFPNR---IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 400 ~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
..|... +..|....+ ..|...++......+|.++||.++|.+++..|+.+...+.+...++-.-++.+
T Consensus 382 l~P~l~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 382 LIPTLG-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred HhhhhH-HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 334443434 67999999999999999999999999999999998888888887776655443
No 81
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3.5e-29 Score=239.24 Aligned_cols=404 Identities=16% Similarity=0.148 Sum_probs=287.8
Q ss_pred CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308 46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA 125 (489)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 125 (489)
..+.|.+.+..++......-....++...+.++++++.+.++. +|+.++....+.+..++.+.+.||||.|++.+.|.
T Consensus 41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~ 118 (509)
T KOG2504|consen 41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGG 118 (509)
T ss_pred CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHH
Confidence 3456766666666666665556667788999999999988886 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHH-HHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308 126 LPMIIGASMSAITKNLWGMLLG-RLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL 204 (489)
Q Consensus 126 ~~~~i~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 204 (489)
++.+++.++.++++++|++++. -++.|+|.|..+.....++..+| +++|+.+.|+...+.++|.++-|.+...+.+..
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~ 197 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY 197 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh
Confidence 9999999999999999998885 68999999999999999999887 677999999999999999999999999999999
Q ss_pred chHHHHHHHhHHHHHHHHHHhhcccC-ChhHHHhcCChHHHHH---HHH--------HHhCCC-Cch----HHHHHHhhh
Q 011308 205 GWWRICFWVATIPAAFLALFMEFCAE-SPHWLFKRGRGAEAEA---ELE--------RLFGGL-HVK----YSMAELSKS 267 (489)
Q Consensus 205 ~~Wr~~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~---~~~--------~~~~~~-~~~----~~~~~~~~~ 267 (489)
| ||+.+++.+.+.+-..+.....++ +++.. ++..++.+. ..+ ...... ... .......+.
T Consensus 198 G-~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (509)
T KOG2504|consen 198 G-WRGALLIFGGISLNVLVAGALLRPLSPPKK--PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRG 274 (509)
T ss_pred C-cHHHHHHHHHHHHHHHHHHHHcCCCCcCCC--chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhC
Confidence 9 999999988887666555444333 22100 000000000 000 000000 000 000011111
Q ss_pred hhccc--hhhhhH----HhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHH
Q 011308 268 ERGDE--ADAVKF----SELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGS 338 (489)
Q Consensus 268 ~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 338 (489)
+.+.. ..+... .++++++.++...+...+..+ ++.....+++.+.+..+.+... ...+.++..++++
T Consensus 275 ~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~----g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gR 350 (509)
T KOG2504|consen 275 PDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYL----GFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGR 350 (509)
T ss_pred CccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhh
Confidence 11111 111222 577888777655555544444 5667777888888888877665 6667788999999
Q ss_pred HHHHHHHhhhCCch--hHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhh
Q 011308 339 IIAMILMDKLGRRV--LLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRI 416 (489)
Q Consensus 339 ~~~g~l~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 416 (489)
++.|++.|+...++ ....+.+..+++.+...+... .+......++++...+. ........+.|+.+.++
T Consensus 351 i~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~--------~~~l~~~~~~fG~~~g~-~~~l~~~i~~~~~g~~~ 421 (509)
T KOG2504|consen 351 IILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT--------YVGLIVFSILFGFCVGS-FSSLTPVILVDLVGLEK 421 (509)
T ss_pred hhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcChhh
Confidence 99999999988433 344445555555433333322 22333444444444332 23344457889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHhhh
Q 011308 417 RAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 417 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 468 (489)
-..+.|+...+..++..+||++.|.+.|..| |...|...+.+.+++..+.+.
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence 9999999999999999999999999999988 888888888887777755543
No 82
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.96 E-value=7.3e-28 Score=232.44 Aligned_cols=408 Identities=11% Similarity=0.045 Sum_probs=250.9
Q ss_pred hHHHHHHHHhhhhccccccccchh-hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHH
Q 011308 51 PHVLVAIISSFLFGYHLGVVNETL-ESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPM 128 (489)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~ 128 (489)
+.+..+++..+...+......+.+ ..+.+++|.+.++. +++.+.+.....+..+++|+++|| +||||+++.+.+++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~ 91 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL 91 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence 334455555566666655554444 45577899887777 899999998888889999999999 99999999999999
Q ss_pred HHHHHHHhhhhhHHH-HHHHHHHHhhcccchhhhHHHHHHhcCCcc--chhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 129 IIGASMSAITKNLWG-MLLGRLFVGTGMGIGPAVAALYVSEVSPAY--VRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 129 ~i~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
++++++++++.+... ++++|+++|+|.|...+...+++.|.+|++ +|++++++++.+.++|..+||.+++++.+..|
T Consensus 92 ~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g 171 (489)
T PRK10207 92 AIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG 171 (489)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999876554 457999999999999999999999999877 45789999999999999999999999999998
Q ss_pred hHHHHHHHhHHHHHHHHHHhhcccCChhHHH--hcCChHHHHHHHHH------------HhCCCCchHHH--HH------
Q 011308 206 WWRICFWVATIPAAFLALFMEFCAESPHWLF--KRGRGAEAEAELER------------LFGGLHVKYSM--AE------ 263 (489)
Q Consensus 206 ~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~------ 263 (489)
||+.|++.++..++..+...+.++..+... .++++.|....... ........... ..
T Consensus 172 -w~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 250 (489)
T PRK10207 172 -YSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVT 250 (489)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 999999965543333333333332111000 00111111111000 00000000000 00
Q ss_pred --HhhhhhccchhhhhHHhhhccccccchhhh--HHHHHhhhhcchhHHHHhHHHHHHh--cCCC--CCchhHHHHHHHH
Q 011308 264 --LSKSERGDEADAVKFSELISPRNFGVVFIG--STLFALQQLSGINAVFYFSSTVFKN--AGVP--SDSGNICVGIANL 335 (489)
Q Consensus 264 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~ 335 (489)
....+. +. .+.+|+|.+....+. ..+++..........+.+.+...+. .|.. +.....+..+..+
T Consensus 251 ~~f~~~~~-~~------~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~ii 323 (489)
T PRK10207 251 IIFFREAF-KL------DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVV 323 (489)
T ss_pred HHHHHHHh-cC------CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHH
Confidence 000000 00 123343433222211 2222222222333344444322221 1221 1223334446666
Q ss_pred HHHHHHHHHHhhhCCchh-------HHHHHHHHHHHHHHHHHHhhccc--CCCcchhHHHHHHHHHHHHHhcCCCcchhh
Q 011308 336 SGSIIAMILMDKLGRRVL-------LLGSFLGMAIAMGVQAIAATSFV--SSSGALSLSLGGMLLFVLTFSLGAGPVPSL 406 (489)
Q Consensus 336 ~~~~~~g~l~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (489)
+..++.+++.||+++|+. +..+.++.+++++.+........ ....+.++.+....+.+.+.... .+....
T Consensus 324 i~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~ 402 (489)
T PRK10207 324 VASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFI-SALGLA 402 (489)
T ss_pred HHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHH-hHHHHH
Confidence 788888999999998863 56677776666654432211111 11233454555555555555543 445556
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhccchhhHHHHHHHHHHHHHhhhc
Q 011308 407 LLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE----------QLGPLILYTIFGSFCFLAVIYVKRN 469 (489)
Q Consensus 407 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
++.+..|++.+|.++|+.+...++|+.++..+...... ...+...|...++.++++.++++..
T Consensus 403 ~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~ 475 (489)
T PRK10207 403 MIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM 475 (489)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788899999999999999999999999888764421 1124566777777766666655543
No 83
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.96 E-value=1.4e-27 Score=227.45 Aligned_cols=373 Identities=15% Similarity=0.122 Sum_probs=244.3
Q ss_pred HHHHHhhhhccccccccchhhhh-hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308 55 VAIISSFLFGYHLGVVNETLESI-SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 133 (489)
.+....++.......+.|.+|.+ .+++|.+..+. |++.+.+.+++.+++++.|+++||+|||+.++.+....+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~ 83 (396)
T TIGR00882 6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA 83 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 34445556666666777787765 45689888777 9999999999999999999999999999999887766655443
Q ss_pred HH---hhh-----hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 134 MS---AIT-----KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 134 ~~---~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
.. .+. +.+..+.+.|++.|++.+...+....+..|.. +++++..+......++|.++++.+++.+.+. +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~ 160 (396)
T TIGR00882 84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-D 160 (396)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc-C
Confidence 22 111 22344566789999998888888888877753 2345666777788889999999999988764 6
Q ss_pred hHHHHHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308 206 WWRICFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP 284 (489)
Q Consensus 206 ~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (489)
||++|++.++..++..+..++ .+|+|+. + +.++ ..+.++++++..+.++++|+
T Consensus 161 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~---------------------~~~~~~~~~~~~~~~~~l~~ 214 (396)
T TIGR00882 161 -PQIVFWLGSGFALILMLLLMFAKPKAPSS---A-TVAN---------------------ALGANASAFSLKLALELFRQ 214 (396)
T ss_pred -chHHHHHHHHHHHHHHHHHHHhCCCCchh---h-hhhc---------------------ccccccCCCCHHHHHHHHcC
Confidence 999999988887776655544 3443320 0 0000 00000111223356778888
Q ss_pred ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308 285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM 361 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 361 (489)
+.++...+..+.............+.|.+.+.+..+.+... ......+...++.+..+++.||+++|+.+..+..+.
T Consensus 215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~ 294 (396)
T TIGR00882 215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIM 294 (396)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 87765544433332222122223444444444322333322 344445667778889999999999999988877777
Q ss_pred HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH-HHHHHHHHHHHHHHHHH
Q 011308 362 AIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV-CMAVHWVINFFVGLLFL 440 (489)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g 440 (489)
++...+..... +.+..+....+.+.+..... .....+..+..|++.++++.+. .+....+|+.+++.+.|
T Consensus 295 ~l~~~~~~~~~--------~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G 365 (396)
T TIGR00882 295 SVRIIGSSFAT--------TALEVVILKMLHAFEVPFLL-VGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAG 365 (396)
T ss_pred HHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHH
Confidence 66655433321 12223333333333332211 1223355666777777777766 67889999999999999
Q ss_pred HHHHHhccchhhHHHHHHHHHHHHHhh
Q 011308 441 RLLEQLGPLILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 441 ~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
.+.|..|+...|.+.+++.++..++..
T Consensus 366 ~l~~~~G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 366 NMYDSIGFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888877766543
No 84
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.96 E-value=1e-27 Score=259.05 Aligned_cols=356 Identities=14% Similarity=0.007 Sum_probs=239.8
Q ss_pred ccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh---hhhhHHHHHH
Q 011308 70 VNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA---ITKNLWGMLL 146 (489)
Q Consensus 70 ~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~ 146 (489)
.....+.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++.+.++..++.++.. .+++++.+++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (1146)
T PRK08633 29 KILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFA 108 (1146)
T ss_pred HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 3445556666777766665569999999999999999999999999999999998877666555443 4578999999
Q ss_pred HHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc--------cchHHHHHHHhHHHH
Q 011308 147 GRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI--------LGWWRICFWVATIPA 218 (489)
Q Consensus 147 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~--------~~~Wr~~f~~~~~~~ 218 (489)
+|+++|++.+...++..+++.|++|+++|++++++.+.+..+|.++|+.+++++.+. .++|++.+.+..+..
T Consensus 109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1146)
T PRK08633 109 VTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAV 188 (1146)
T ss_pred HHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998875 333555554444333
Q ss_pred H-HHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHH
Q 011308 219 A-FLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLF 297 (489)
Q Consensus 219 ~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (489)
. +.+++.+.+||+++....+.+.+ ...........++.+++++.++..++..++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (1146)
T PRK08633 189 AVLGLIFAYRLPKVPAAAPEVFDKK------------------------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYF 244 (1146)
T ss_pred HHHHHHHHhcCcCCCCCCccccccc------------------------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3 33334455677653211100000 0000011123456677777766555544444
Q ss_pred HhhhhcchhHHHHhHHHHH-HhcCCCCC-c---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHh
Q 011308 298 ALQQLSGINAVFYFSSTVF-KNAGVPSD-S---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAA 372 (489)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (489)
.+.. .....+++.++ ...+.+.. . .....+++.+++.++.+++.||+++++.+..+.++.+++.+++.+..
T Consensus 245 ~~~~----~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1146)
T PRK08633 245 WFIS----QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP 320 (1146)
T ss_pred HHHH----HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh
Confidence 4322 22223333333 33565555 3 55556678889999999999999988887777776666655554432
Q ss_pred hcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchh
Q 011308 373 TSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ-LGPLIL 451 (489)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~ 451 (489)
+.+..++..++++++.+... +...+++.+..|++.||+++|+.+++.+++..+++.+.+.+... .++...
T Consensus 321 --------~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~ 391 (1146)
T PRK08633 321 --------SLASVLVLFFLFGFSAGLFI-VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGL 391 (1146)
T ss_pred --------hHHHHHHHHHHHHHHHHHhh-HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 12233344444444444333 34456788999999999999999999999998887776655431 233334
Q ss_pred hHHHHHHHHHH
Q 011308 452 YTIFGSFCFLA 462 (489)
Q Consensus 452 ~~~~~~~~~~~ 462 (489)
+.+.+.++++.
T Consensus 392 ~~~~~~~~~~~ 402 (1146)
T PRK08633 392 FYLIALVTLIG 402 (1146)
T ss_pred HHHHHHHHHHH
Confidence 54444444433
No 85
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.96 E-value=3.6e-27 Score=226.62 Aligned_cols=371 Identities=19% Similarity=0.178 Sum_probs=267.0
Q ss_pred HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308 53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 132 (489)
+..++.+.+++.++..+....++.+..+.. .+....+++..+..+...+.++++|.++||++|||+++.+.++.++..
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt--~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~ 89 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVTQLT--GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA 89 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 334556667777777777777887776654 445555999999999999999999999999999999999988877665
Q ss_pred HHHhhh-----hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchH
Q 011308 133 SMSAIT-----KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWW 207 (489)
Q Consensus 133 ~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~W 207 (489)
+..++. .+.+.+++.-++.|++.+...|+..+++.|..|+++...+.++.+...++..++||.++|.+....| -
T Consensus 90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~ 168 (524)
T PF05977_consen 90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-A 168 (524)
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-H
Confidence 554432 3788899999999999999999999999999999999999999999999999999999999998888 6
Q ss_pred HHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccc
Q 011308 208 RICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNF 287 (489)
Q Consensus 208 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (489)
.+.|++.++..++..+....++++++ +++.++ ++-.+.-...++.+.+++..
T Consensus 169 ~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~-------------------------e~~~~~l~~G~ryv~~~~~l 220 (524)
T PF05977_consen 169 AAAFLINALSFLISILALLRWKPPPP---PSSLPR-------------------------ERFFSALREGLRYVRSSPPL 220 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccc---ccccch-------------------------hhhhhhHHHHHHHHhcchHH
Confidence 88998887766665444444433211 000000 00011122344555556665
Q ss_pred cchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308 288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAI 363 (489)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 363 (489)
+..+...+++.+... .+...+|.+.++ .+.++.. .....+++.++|.++.+++.+|+++++.+..+.+..++
T Consensus 221 ~~~l~~~~~~~l~~~----a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~ 296 (524)
T PF05977_consen 221 RSVLLRSFLFNLFAS----AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFAL 296 (524)
T ss_pred HHHHHHHHHHHHhhh----HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHH
Confidence 555444444433222 222234444432 4444444 56677889999999999999999988888888877777
Q ss_pred HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 364 AMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (489)
+.+.+.+.... +.....+++.+.+..... ....+..++..|++.+|++++++++....+..+|..+.|.+.
T Consensus 297 ~~~~lal~~~~--------~~~~~~l~l~G~~~~~~~-~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 297 ALLLLALSPSF--------WLALIALFLAGAAWIIAN-SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHhcchHH--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666654332 334444444454444332 344557889999999999999999999999999999999999
Q ss_pred HHhccchhhHHHHHHHHHHHHHhh
Q 011308 444 EQLGPLILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 444 ~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
+..|....+.+.++..+++.++..
T Consensus 368 ~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 368 DHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999988888777666555555444
No 86
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.96 E-value=2.4e-27 Score=255.04 Aligned_cols=341 Identities=11% Similarity=-0.025 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhh---hhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHH
Q 011308 90 EGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQL---CALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYV 166 (489)
Q Consensus 90 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i 166 (489)
.++..+++.+.+.++++++|+++||+|||+++.. +.++..+..+.....+|++.++++|+++|++.+...|+..+++
T Consensus 54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l 133 (1140)
T PRK06814 54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL 133 (1140)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence 4888999999999999999999999999997633 2233333333334458999999999999999999999999999
Q ss_pred HhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHH
Q 011308 167 SEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEA 246 (489)
Q Consensus 167 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 246 (489)
.+++++++|++++++.+++.++|.++||++++++.+..+ |++.|+..++..++..+..+++|+++.. .++...+.
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-- 208 (1140)
T PRK06814 134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKTGNA--APDLKIDR-- 208 (1140)
T ss_pred HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeecc--
Confidence 999999999999999999999999999999999999888 9999955555555555555566665420 00000000
Q ss_pred HHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc
Q 011308 247 ELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS 325 (489)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 325 (489)
...++....++.+.+++.++...+..++..+... .+..++|.++.+ .+.+...
T Consensus 209 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~g~~~~~ 262 (1140)
T PRK06814 209 ----------------------NIIRSTITLLKYAKADKRIWLAILGISWFWLVGA----VVLSQLPLLAKETLGGDENV 262 (1140)
T ss_pred ----------------------chHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHcCCchHH
Confidence 0000112346677788887776666555544322 233344444443 4555443
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcc------------cCCCcchhHHHHHHH
Q 011308 326 ---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSF------------VSSSGALSLSLGGML 390 (489)
Q Consensus 326 ---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 390 (489)
.....+++.+++.++.+++.|+..+++.+..+.++..++.+.+.+..... .....+.+...+..+
T Consensus 263 ~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1140)
T PRK06814 263 ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLF 342 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHH
Confidence 55667788899999999999887766655555554444443333210000 000122233344444
Q ss_pred HHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHH
Q 011308 391 LFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ-LGPLILYTIFGSFCFLA 462 (489)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~ 462 (489)
+++.+.+.... ...+++++..|++.+|+++|+.+++.+++..+++.+.+.+.+. .++...+.+.++++++.
T Consensus 343 ~~g~~~~~~~~-~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 414 (1140)
T PRK06814 343 GLAAAGGLYIV-PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIV 414 (1140)
T ss_pred HHHHHHHHhHH-HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 45554443333 3566888999999999999999999999999999999998753 34555555444443333
No 87
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.96 E-value=1.2e-26 Score=224.22 Aligned_cols=410 Identities=13% Similarity=0.075 Sum_probs=256.2
Q ss_pred HHHHHHHhhhhccccccccchhhhhhh-c--ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHH
Q 011308 53 VLVAIISSFLFGYHLGVVNETLESISL-D--LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPM 128 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~--~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~ 128 (489)
+..+++..+...+......+.+|.+.+ + +|++..+. |++.+.+.+++.++++++|+++|| +|||+++..+.++.
T Consensus 12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 344455666666776667777776654 4 78877776 999999999999999999999999 89999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccc---hhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYV---RGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
+++.++.+++++++.++++|++.|+|.|...+...++++|++|+++ |+.++++++.+.++|.++||.+++++.+..+
T Consensus 90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g 169 (475)
T TIGR00924 90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG 169 (475)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998754 8889999999999999999999999998888
Q ss_pred hHHHHHHHhHHHHHHHHHHhhccc----CChhHHHhcC-ChHH--HHHHHHH------------HhCCCCchHHH-----
Q 011308 206 WWRICFWVATIPAAFLALFMEFCA----ESPHWLFKRG-RGAE--AEAELER------------LFGGLHVKYSM----- 261 (489)
Q Consensus 206 ~Wr~~f~~~~~~~~~~~~~~~~~~----e~~~~~~~~~-~~~~--~~~~~~~------------~~~~~~~~~~~----- 261 (489)
||+.|++.++..++..+...+.+ +.|+. +++ +.++ ..+.... ...........
T Consensus 170 -~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (475)
T TIGR00924 170 -YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTV 246 (475)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999997765554433333322 22110 000 0010 0000000 00000000000
Q ss_pred -----HHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc--C--CCCCchhHHHHH
Q 011308 262 -----AELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA--G--VPSDSGNICVGI 332 (489)
Q Consensus 262 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~ 332 (489)
........++. ....+-.|...+..+++...+++..+....+.++.+.....+.. + .+.+....+.++
T Consensus 247 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~ 323 (475)
T TIGR00924 247 TLAVIIFFFRLAFKPR---LDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPF 323 (475)
T ss_pred HHHHHHHHHHHHHhcc---CCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHH
Confidence 00000000000 00000001111112222222222222222222222222221111 1 112235555556
Q ss_pred HHHHHHHHHHHHHhhhCC-----chhH--HHHHHHHHHHHHHHHHHhhcccC-CCcchhHHHHHHHHHHHHHhcCCCcch
Q 011308 333 ANLSGSIIAMILMDKLGR-----RVLL--LGSFLGMAIAMGVQAIAATSFVS-SSGALSLSLGGMLLFVLTFSLGAGPVP 404 (489)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (489)
..++..++..++..|.+| +... ..+.++.++++..+.+....... ...+.++.+....+.+.+-. ...|..
T Consensus 324 ~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~-~~~p~~ 402 (475)
T TIGR00924 324 WVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGEL-MISPLG 402 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH-HHhHHH
Confidence 666666554443334333 2333 56777777776666543211111 12345555555555555544 445677
Q ss_pred hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhccc
Q 011308 405 SLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 405 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
..+..+..|++.||+.+|+......+|..+++.+.....+..++...|...++++++..++.++..|
T Consensus 403 ~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 403 LSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999887777767777888888777777666655443
No 88
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.96 E-value=4.7e-27 Score=207.71 Aligned_cols=366 Identities=14% Similarity=0.151 Sum_probs=276.3
Q ss_pred HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308 52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 131 (489)
.+..+....++.++......+.+|.+++.|+++..+. +++...++.+|.+.+++.|++.+|+|+|+.++.|+.+++++
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg 91 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG 91 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445555667778888889999999999999998888 99999999999999999999999999999999999999999
Q ss_pred HHHHh---hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc-----
Q 011308 132 ASMSA---ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI----- 203 (489)
Q Consensus 132 ~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~----- 203 (489)
+.+.. ...+|..++++-++.|.|.+...++.+.+++...++++....+++.+..+++|.+++|++++.+...
T Consensus 92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~ 171 (422)
T COG0738 92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT 171 (422)
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc
Confidence 99984 5678999999999999999999999999999999998889999999999999999999999988762
Q ss_pred -------------cchHHHHHHHhHHHHHHHHHHhhc--ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhh
Q 011308 204 -------------LGWWRICFWVATIPAAFLALFMEF--CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSE 268 (489)
Q Consensus 204 -------------~~~Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (489)
...||++|...+...+++.+.... .|+.+. ..+
T Consensus 172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~--------------------------------~~~ 219 (422)
T COG0738 172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV--------------------------------AAP 219 (422)
T ss_pred cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc--------------------------------ccc
Confidence 112788888877776666665444 333221 000
Q ss_pred hccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHH
Q 011308 269 RGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMIL 344 (489)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l 344 (489)
+..+.+.....+++++|.++...+..+++..... ....+++.++.+ .|.+... .......+.++|++++.++
T Consensus 220 ~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Ev----a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~l 295 (422)
T COG0738 220 SLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEV----AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSAL 295 (422)
T ss_pred cccccccchHHHHHhChHHHHHHHHHHHHHhHHH----HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111156788889988877777777766444 444455555555 4444433 6667778889999999999
Q ss_pred HhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHH
Q 011308 345 MDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVC 424 (489)
Q Consensus 345 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 424 (489)
.+|+...+.+....+...+.++...+... .+.+.+..+.+.+.+ ...|...+...+..| + .....|..
T Consensus 296 m~~~~~~k~Laf~a~~~ill~~~~~l~~g---------~v~~~~l~~ig~F~s-imfPTIfslal~~l~-~-~ts~~s~~ 363 (422)
T COG0738 296 MSRIKPEKYLAFYALIAILLLLAVALIGG---------VVALYALFLIGLFNS-IMFPTIFSLALKNLG-E-HTSVGSGL 363 (422)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHhcC---------hHHHHHHHHHHHHhH-HHHHHHHHHHHhccC-c-ccccccee
Confidence 99999888887777666555555555433 123344444444444 445677777778878 3 44555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhh
Q 011308 425 MAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 425 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
-.+.-+|+++.|++.|++.|+.|....+.....+|.+..+...
T Consensus 364 l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~~~ 406 (422)
T COG0738 364 LVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFA 406 (422)
T ss_pred eeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999987777766666666654443
No 89
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.4e-26 Score=196.99 Aligned_cols=366 Identities=17% Similarity=0.146 Sum_probs=276.3
Q ss_pred hhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308 50 LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI 129 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 129 (489)
+..+..+.+..+--.-..+.++|.++++++|+|+|.+.. |++.+...+...+.+++..+++.|+|.++.+..++++.+
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~ 88 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA 88 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 444444444445555566788999999999999999888 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308 130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI 209 (489)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~ 209 (489)
++.++-... +.+.++.+-.+.|.|.+...+..+.++.+.||+ +-+..+++|....++|..+++.+...+.++.++||.
T Consensus 89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~ 166 (395)
T COG2807 89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG 166 (395)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence 999999887 788889999999999999999999999999965 579999999999999999999999999988844999
Q ss_pred HHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccc
Q 011308 210 CFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGV 289 (489)
Q Consensus 210 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (489)
.....+.++++.++.++. ...| ++ ....+.+..+-..++|++.-|.
T Consensus 167 aL~~WAl~allAl~~WlP--q~~r----~~----------------------------~~~~~~~~~~~~~vw~~~~aW~ 212 (395)
T COG2807 167 ALGFWALLALLALLIWLP--QALR----EQ----------------------------AASIATKLVSVRKVWRSPLAWQ 212 (395)
T ss_pred HHHHHHHHHHHHHHHHhh--hccc----cc----------------------------ccccccccccccccccCchhHH
Confidence 999999999888776543 2111 00 0001111222345788887776
Q ss_pred hhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhC-CchhHHHHHHHHHHHH
Q 011308 290 VFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLG-RRVLLLGSFLGMAIAM 365 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~ 365 (489)
+.+.+.+..+ .++....++|.++.+.|.++.. ...+..+..++.++....+.+|.+ +|+.......++.++.
T Consensus 213 vtLfmGlqS~----~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 213 VTLFMGLQSL----LYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred HHHHHHhhHH----HHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 6655555444 4666777889999999998877 445566788889999999999865 6666677777777777
Q ss_pred HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhc-ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 366 GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLS-EIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (489)
+.+.+.+... . +....+++.+.+.. .|+....+. +...++..+.-.|+.+.++++-..+||.++|.+.|
T Consensus 289 ~G~~~~P~~~------~---~lw~~llG~G~G~~-F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD 358 (395)
T COG2807 289 VGLLLAPGQL------P---ILWALLLGLGQGGA-FPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD 358 (395)
T ss_pred HHHHHhhhhH------H---HHHHHHHhCccchH-HHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence 7766554321 1 11134444443332 233333333 44456778999999999999999999999999999
Q ss_pred Hhc-cchhhHHHHHHHHHHHHHhh
Q 011308 445 QLG-PLILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 445 ~~g-~~~~~~~~~~~~~~~~~~~~ 467 (489)
..| |...+..++.+.++..+.-+
T Consensus 359 a~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 359 ATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHh
Confidence 987 66666666666555555444
No 90
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.95 E-value=5.1e-26 Score=217.40 Aligned_cols=376 Identities=18% Similarity=0.184 Sum_probs=236.4
Q ss_pred HHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH
Q 011308 56 AIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS 135 (489)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 135 (489)
.++.....++.....+..++.+..|+|-++.. +|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|++.+
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~ 125 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGGSDNW---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVC 125 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHh
Confidence 34444444455555677789999999865443 699999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhH
Q 011308 136 AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVAT 215 (489)
Q Consensus 136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~ 215 (489)
+.++|...++.+..+.|+|.|... .....++|..|.|.|....++..........+++.++..+....+ |||.|++..
T Consensus 126 atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~ 203 (599)
T PF06609_consen 126 ATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFI 203 (599)
T ss_pred hcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHH
Confidence 999999999999999999977665 456668999999999888877776665555677777776666666 999999998
Q ss_pred HHHHHHHHHhhcccCChhHHHhcCC---hHHHHHHHHHH-----------------hCCCC-----chHHHH--------
Q 011308 216 IPAAFLALFMEFCAESPHWLFKRGR---GAEAEAELERL-----------------FGGLH-----VKYSMA-------- 262 (489)
Q Consensus 216 ~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~-----------------~~~~~-----~~~~~~-------- 262 (489)
+...+.++..+++..+|++...+++ +.+.-+.++.+ .+... ......
T Consensus 204 i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~ 283 (599)
T PF06609_consen 204 IWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVL 283 (599)
T ss_pred HHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHH
Confidence 8776665543332222322222221 11222221111 01110 000000
Q ss_pred --HHhhhhhc-cchhhhhHHhhhccc-cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCC---CCCchhHHHHHHHH
Q 011308 263 --ELSKSERG-DEADAVKFSELISPR-NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGV---PSDSGNICVGIANL 335 (489)
Q Consensus 263 --~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 335 (489)
..--.|.. ..+++.-..+++|++ .+...++..++....++......+.....++..... ..+......+++..
T Consensus 284 Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~ 363 (599)
T PF06609_consen 284 LVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSC 363 (599)
T ss_pred HHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHH
Confidence 00011211 123344455677763 343333444444433322222223322223332222 12235566778888
Q ss_pred HHHHHHHHHHhhhCC-chhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCCh
Q 011308 336 SGSIIAMILMDKLGR-RVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPN 414 (489)
Q Consensus 336 ~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 414 (489)
.+.++.|.+..+++| |..++.+..++.+++.++..... ++.+. .+...++.+.+.+.... .....++-..|+
T Consensus 364 ~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~----~n~~~--~i~~~~l~g~giG~~~~-~~~~~~ql~~p~ 436 (599)
T PF06609_consen 364 AGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP----DNKNA--AIAFLVLAGFGIGGILV-PAIVIAQLIVPD 436 (599)
T ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC----CCcch--HHHHHHHHHHhHHHHHH-HHHHeeEeeeCc
Confidence 888999999998886 44555666666655555443321 11222 22333333444333322 223345566799
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 415 RIRAKAMAVCMAVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 415 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (489)
+..|++.|+..+++.+|+.++..+...+.
T Consensus 437 ~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 437 EDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999999999886655
No 91
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.95 E-value=1e-26 Score=213.13 Aligned_cols=397 Identities=13% Similarity=0.070 Sum_probs=251.8
Q ss_pred HHHHHHHHhhhhccccccccchhhhhhhcccccccc-hHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHH
Q 011308 52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGST-MAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMII 130 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i 130 (489)
....+|+..|+.. .+...+.+.|.+.+|+|++.++ . |.+.++++.+|++++++.|+++||+|.|+++..+++.+++
T Consensus 28 ~~~~lC~fGF~~e-~R~n~s~a~p~L~~elglT~~qv~--G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl 104 (511)
T TIGR00806 28 LVLYLCFYGFMAQ-FRPGESFITPYLLTVLNFTEETVT--NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC 104 (511)
T ss_pred HHHHHHHHHHHHH-hhchHHHHHHHHHHHcCCCHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 3344555545543 3566788899999999999988 5 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHH
Q 011308 131 GASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRIC 210 (489)
Q Consensus 131 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~ 210 (489)
.+++.++++++..+.+.|++.|++.|... +...++..|+|+++|+++.++..++..+|.+++++++++ ....+ ||+.
T Consensus 105 ~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~g-Wr~y 181 (511)
T TIGR00806 105 VWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLG-WISY 181 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC-chhH
Confidence 99999999999999999999999999999 999999999999999999999999999999999999999 44567 8876
Q ss_pred HHHh---HHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhh---ccchhhhhHHhhhcc
Q 011308 211 FWVA---TIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSER---GDEADAVKFSELISP 284 (489)
Q Consensus 211 f~~~---~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 284 (489)
+.+. .....+.++..+++|..++-+.-+++.+.......+.....+.+........+.. .-..-...+++..++
T Consensus 182 ~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n 261 (511)
T TIGR00806 182 STLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRN 261 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcC
Confidence 6543 2233334445567786555333332211000000000000000000000000000 001112334444555
Q ss_pred ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCC-CCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308 285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVP-SDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 360 (489)
+... ...+++....+++..+..|.+.+.+...-+ ... +-.+..+.+.+..+..|++-.+..+...+..+...
T Consensus 262 ~~vl----~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s 337 (511)
T TIGR00806 262 PQLL----LWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVS 337 (511)
T ss_pred cchh----hhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Confidence 5443 233344444456777777888777664221 112 44455566667777888874444332223333222
Q ss_pred HHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 011308 361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLF- 439 (489)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~- 439 (489)
..-+.+++.. ....++|+..++.+++...+.+... +...-+++....+..|..+|+.+++..+-..+...+.
T Consensus 338 ~~~~gll~~m------~~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVv 410 (511)
T TIGR00806 338 AIQAGLVFWM------SQSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAVVS 410 (511)
T ss_pred HHHHHHhhhh------hcccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEE
Confidence 2222221111 1245678888888888888876544 3333455555667779999999998877776666554
Q ss_pred ---HHHHH---Hh-ccchhhHHHHHHHHHHHHH
Q 011308 440 ---LRLLE---QL-GPLILYTIFGSFCFLAVIY 465 (489)
Q Consensus 440 ---g~l~~---~~-g~~~~~~~~~~~~~~~~~~ 465 (489)
|.-.+ ++ -|...|.+++++.++..++
T Consensus 411 d~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~~ 443 (511)
T TIGR00806 411 DKRGLGLQVRKQFRIYSVYFLVLSIICFFGAGL 443 (511)
T ss_pred cccccCCCceeEEEehhhHHHHHHHHHHHHHHH
Confidence 11111 11 1344566666666655443
No 92
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.95 E-value=4.5e-27 Score=233.10 Aligned_cols=301 Identities=17% Similarity=0.176 Sum_probs=213.1
Q ss_pred HHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308 54 LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 133 (489)
+..++..+...+..+..++.++.+.++|+++.++. |++.+.+.++++++.++.|+++||+|||+++.+++++++++++
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence 44445666667777888999999999999999888 9999999999999999999999999999999999999999999
Q ss_pred HHhhhh---------------------------------------------------hHHHHHHHHHHHhhcccchhhhH
Q 011308 134 MSAITK---------------------------------------------------NLWGMLLGRLFVGTGMGIGPAVA 162 (489)
Q Consensus 134 ~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~ 162 (489)
++++.+ .+..++++|+++|+|.+...+..
T Consensus 114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~ 193 (633)
T TIGR00805 114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG 193 (633)
T ss_pred HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence 988753 25567789999999999999999
Q ss_pred HHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc---------------------chHHHHHHHhHHHHHHH
Q 011308 163 ALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL---------------------GWWRICFWVATIPAAFL 221 (489)
Q Consensus 163 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~---------------------~~Wr~~f~~~~~~~~~~ 221 (489)
.+++.|++|+++|+++++++..+..+|.++|+++++++.+.+ |.||..|++.+++.++.
T Consensus 194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~ 273 (633)
T TIGR00805 194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT 273 (633)
T ss_pred chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887542 12788898888887777
Q ss_pred HHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhh
Q 011308 222 ALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQ 301 (489)
Q Consensus 222 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (489)
.+.++++|++.+....+.+.+..++. ....... . ...+.....++....++++++++.++...+..++....
T Consensus 274 ~v~l~~~p~~lp~~~~~~~~~~~~~~--~~~~~~~-~----~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~- 345 (633)
T TIGR00805 274 SIPFFFFPKALPKEGKRVNVDVHETE--KLEKSED-K----SRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLA- 345 (633)
T ss_pred HHHHHhCccccCCcccccchhhhhhh--ccccccc-c----cchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-
Confidence 66666666543210000000000000 0000000 0 00000001112234577889999887766666555543
Q ss_pred hcchhHHHHhHHHHHHh-cCCCCCchhHHH---HH-HHHHHHHHHHHHHhhhCC--chhHHHHHHHHHHHHHH
Q 011308 302 LSGINAVFYFSSTVFKN-AGVPSDSGNICV---GI-ANLSGSIIAMILMDKLGR--RVLLLGSFLGMAIAMGV 367 (489)
Q Consensus 302 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~ 367 (489)
...+..++|.+++. .+.+......+. .+ +.+++.+++|+++||++. |+.+..+.+...++.++
T Consensus 346 ---~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 346 ---FNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred ---HHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 44455566666654 566655543333 33 457899999999999984 45666666555555433
No 93
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.95 E-value=2e-26 Score=223.04 Aligned_cols=336 Identities=17% Similarity=0.131 Sum_probs=225.9
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc----cCchh-HhhhhhHHHHHHHHHHhhhhh------H
Q 011308 73 TLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG----IGRRR-AFQLCALPMIIGASMSAITKN------L 141 (489)
Q Consensus 73 ~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~------~ 141 (489)
..+.+.+++|+++.+. |++.++..+..++..++.|+++|| +|||| .++.+....+++.+++.+.++ .
T Consensus 22 l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 22 LLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 4556777899988887 999999999999999999999997 68744 677788888888887776553 4
Q ss_pred HHHHHHHHHHhhcccchhhhHHHHHHhcC-CccchhhHHHHHHHHHHHHHHHHHHhhcccc-------cccchHHHHHHH
Q 011308 142 WGMLLGRLFVGTGMGIGPAVAALYVSEVS-PAYVRGAYGSSTQIAACLGILVALFVGLPAK-------EILGWWRICFWV 213 (489)
Q Consensus 142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-------~~~~~Wr~~f~~ 213 (489)
..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+. +..+ ||+.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i 178 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALV 178 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHH
Confidence 56677788889888887777788888887 4688999999998888888777666544443 2345 9999999
Q ss_pred hHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308 214 ATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI 292 (489)
Q Consensus 214 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
.+++.++..+.. ++.+|+++. .+ ++++++.+....+++++++|.++....
T Consensus 179 ~~~l~~~~~~~~~~~~~e~~~~----~~-------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 229 (437)
T TIGR00792 179 LALIGVVSLIICFFGTKERYSE----IP-------------------------KNIEKKLSLKQIFKALFKNDQLLILCL 229 (437)
T ss_pred HHHHHHHHHHHHHcCCEecCCC----CC-------------------------cccccCCCHHHHHHHHhCCHHHHHHHH
Confidence 888877765554 446665310 00 000011112334667788887776655
Q ss_pred hHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHh
Q 011308 293 GSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAA 372 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (489)
..++............++|.....+ .....+.......++.+++.++.+++.||+++|+.+..+..+.+++.+.+.+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~ 308 (437)
T TIGR00792 230 AYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG 308 (437)
T ss_pred HHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc
Confidence 5554444322222222222222111 000011134455678889999999999999999998888877777665554321
Q ss_pred hcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 373 TSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (489)
.+.+.......+.+.+.+.. .+...++..|..+ ++.+|.+.|+.++...+|..+++.+.|.+.+.
T Consensus 309 -------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 309 -------SNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred -------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333333334443322 3445556666644 55689999999999999999999999999998
Q ss_pred hccc
Q 011308 446 LGPL 449 (489)
Q Consensus 446 ~g~~ 449 (489)
.|+.
T Consensus 381 ~G~~ 384 (437)
T TIGR00792 381 IGYV 384 (437)
T ss_pred cCCC
Confidence 7763
No 94
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.95 E-value=2.7e-26 Score=200.02 Aligned_cols=344 Identities=17% Similarity=0.151 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhc
Q 011308 90 EGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEV 169 (489)
Q Consensus 90 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 169 (489)
.|.+.++|.+...+.++.+|.++||||||+++++|++..++..++.+.++|+..++++|++.|+..|- .....++++|.
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV 148 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRAIISDV 148 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHHHHHhh
Confidence 59999999999999999999999999999999999999999999999999997777779999998664 57889999999
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhhccccc---ccchHHHHHHHhHHHHHH-----HHHHhhcccCChhHHHhcCCh
Q 011308 170 SPAYVRGAYGSSTQIAACLGILVALFVGLPAKE---ILGWWRICFWVATIPAAF-----LALFMEFCAESPHWLFKRGRG 241 (489)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~---~~~~Wr~~f~~~~~~~~~-----~~~~~~~~~e~~~~~~~~~~~ 241 (489)
+++|+|+++++..+..+++|.++||.+|+++.+ ..+ +.+|........+ .....+++||+-+ .|++.
T Consensus 149 ~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g--~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~rk~~ 223 (451)
T KOG2615|consen 149 VSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG--SYPFALPCLLVFILAAGDVTFFPWFLPETLP---LRKRN 223 (451)
T ss_pred cChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc--cCchHHHHHHHHHHHHHHHHHHHHhCCcccc---chhhc
Confidence 999999999999999999999999999999998 334 3444443322222 2234566888843 22222
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHhhhh-hccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHH--HH--
Q 011308 242 AEAEAELERLFGGLHVKYSMAELSKSE-RGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSST--VF-- 316 (489)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 316 (489)
++... . .+..+.+ +..+.....--...+++.....+.....+....+.....++.+..+ .+
T Consensus 224 ~~~~~-~-------------~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~ 289 (451)
T KOG2615|consen 224 DEHST-L-------------QEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTH 289 (451)
T ss_pred ccccc-h-------------hhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence 11100 0 0000000 0000001111122334433332222222222222222222222221 12
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCc-----hhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHH
Q 011308 317 KNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRR-----VLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLL 391 (489)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
+..|+++....-.....++.+.++.+.+..+..|. ..+.....++.-.++++.... ....+.....+
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~--------~~~~l~~~s~l 361 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR--------TPVVLYLGSTL 361 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc--------cchhhhHHHHH
Confidence 33556555543344444444444444544444332 233333333322222222221 11223334444
Q ss_pred HHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHH
Q 011308 392 FVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL-GPLILYTIFGSFCFLA 462 (489)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~ 462 (489)
..+..... .+....++....|.++||+++|+..+.+.++.++||.+.|.+.... +-+..+..-+.+.+..
T Consensus 362 ~sf~~A~~-vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 362 KSFSTASV-VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP 432 (451)
T ss_pred HHHHHHHh-hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence 44433333 3455568888999999999999999999999999999998876532 3334444444444444
No 95
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.95 E-value=5.9e-25 Score=208.98 Aligned_cols=371 Identities=10% Similarity=-0.028 Sum_probs=244.3
Q ss_pred HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHH--HHHHHHHHHHHHHHHHH-hhcccCchhHhhhhhHHH-
Q 011308 53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLV--VSTCLGGAFVGSMFSGW-IADGIGRRRAFQLCALPM- 128 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~--~s~~~~~~~~~~~~~g~-l~dr~Grr~~l~~~~~~~- 128 (489)
...++..++..+...+...+.+|.+.+|.|.+.++. |++ .+...+...+.+++++. ..||+||||..++.+.+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence 455666778888888899999999999999988888 886 35667777778888844 799999999976655332
Q ss_pred HHHHHHHh---hhhh-HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308 129 IIGASMSA---ITKN-LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL 204 (489)
Q Consensus 129 ~i~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 204 (489)
++.....+ ...+ ...++..-++.++..+...+....+..|..++++++...+....+..+|.++|+.+.+++.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~ 160 (390)
T TIGR02718 81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF 160 (390)
T ss_pred HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21122222 2222 3334445555666777777888888899998888899999999999999999999998999888
Q ss_pred chHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308 205 GWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP 284 (489)
Q Consensus 205 ~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (489)
+ ||..|++.++..++..+..++++|+++ ++++ .+++...++++.+|+
T Consensus 161 g-w~~~f~~~a~l~~~~~~~~~~~~~~~~---~~~~-----------------------------~~~~~~~~~~~~l~~ 207 (390)
T TIGR02718 161 G-QRPAFLLVACVPLASLVCVLWLKDRAV---ASPE-----------------------------APLARRASLFRFFRR 207 (390)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHcCCCCc---Cccc-----------------------------cchhhHHHHHHHHcC
Confidence 8 999999999887766655555444321 0000 000112245677888
Q ss_pred ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHH----HHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308 285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVG----IANLSGSIIAMILMDKLGRRVLLLGSFLG 360 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 360 (489)
|..+......++..... .....+.+.++.+.|.+......... ...+++.++.|++.||+++|+.+..+..+
T Consensus 208 ~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~ 283 (390)
T TIGR02718 208 PLAWSLLALALLSAMTA----VSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGL 283 (390)
T ss_pred cCHHHHHHHHHHHHHHH----HHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 87666555544444322 22333455566667887776444433 34557788999999999999988776665
Q ss_pred HHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCCh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPN-RIRAKAMAVCMAVHWVINFFVGLLF 439 (489)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~~~ 439 (489)
..+..+.......... ............+.....+... +.......+..++ +.+++.+++.+...++|..++|.+.
T Consensus 284 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~ 360 (390)
T TIGR02718 284 AGSLALLWFAQAAFWL--APGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIA 360 (390)
T ss_pred HHHHHHHHHHHHHccc--CCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5333222222111110 1111111222222222222222 2223343444454 7899999999999999999999999
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHH
Q 011308 440 LRLLEQLGPLILYTIFGSFCFLAVIY 465 (489)
Q Consensus 440 g~l~~~~g~~~~~~~~~~~~~~~~~~ 465 (489)
|.+.|..|+...|...+++.+++.++
T Consensus 361 G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 361 GYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 99999999988888887777666544
No 96
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.95 E-value=5.6e-26 Score=213.51 Aligned_cols=325 Identities=16% Similarity=0.083 Sum_probs=219.8
Q ss_pred cccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-----CchhH-hhhhhHHHHHHHHHHhhh--
Q 011308 67 LGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-----GRRRA-FQLCALPMIIGASMSAIT-- 138 (489)
Q Consensus 67 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~~-- 138 (489)
....++.+|.+.+|+|+|.++. |+..+. .+...+ .+++|+++||+ ||||. ++.+.++.++...+.++.
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~ 79 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP 79 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3456778999999999999887 888655 455554 89999999998 89987 467777787777777776
Q ss_pred -hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch-------HHHH
Q 011308 139 -KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW-------WRIC 210 (489)
Q Consensus 139 -~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-------Wr~~ 210 (489)
.+.+.+.+..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+..+. ||..
T Consensus 80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~ 159 (356)
T TIGR00901 80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI 159 (356)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence 46667777888888888888899999999999999999999999999999999999999888776552 9999
Q ss_pred HHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc---
Q 011308 211 FWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN--- 286 (489)
Q Consensus 211 f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 286 (489)
|++.++..++..+..++ .||+++. +++.++ ++++....++++++++.
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEPQED---ASVPKP--------------------------LTQAVLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcc---cccchh--------------------------HHHHHHHHHHHHHHhcCchH
Confidence 99988877776555444 4554220 000000 00011224556666665
Q ss_pred ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHH---H-HHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308 287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICV---G-IANLSGSIIAMILMDKLGRRVLLLGSFLGMA 362 (489)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~ 362 (489)
.+...+..++... .......+.+.++.+.|.+........ + +..+++.++++++.||+++|+.+..+.++.+
T Consensus 211 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~ 286 (356)
T TIGR00901 211 ALLLLLLIVLYKL----GDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQA 286 (356)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 2322222222222 233344455555566677766643332 3 4567899999999999999988887777776
Q ss_pred HHHHHHHHHhhcccC---CCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHH
Q 011308 363 IAMGVQAIAATSFVS---SSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHW 429 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 429 (489)
+...++.+....... .....+.......+.+++.+. ..+...++..|.+|+++||+.+|+.++..+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 287 LTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGL-GTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 665554443211100 001222233333333443333 234566789999999999999999988764
No 97
>PTZ00207 hypothetical protein; Provisional
Probab=99.94 E-value=3.1e-24 Score=206.82 Aligned_cols=406 Identities=13% Similarity=0.051 Sum_probs=258.9
Q ss_pred CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308 46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA 125 (489)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~ 125 (489)
..++|..+..........+.. ..++...|.+++++|++.++. +++.++. ..+..++++.|+++||+|||+++.++.
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ 98 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFM-YAFNLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSM 98 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 345565555544444444332 345667788999999988777 7887763 445677888999999999999999999
Q ss_pred HHHHHHHHHHhhh------hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHH-HHHhhc
Q 011308 126 LPMIIGASMSAIT------KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILV-ALFVGL 198 (489)
Q Consensus 126 ~~~~i~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~~~~ 198 (489)
+++++++++++++ .+++.+.+.|+++|+|.+...+.....+.+|+| ++||++.++...+.++|..+ +++..+
T Consensus 99 ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~ 177 (591)
T PTZ00207 99 TVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLA 177 (591)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 689999999999999999999999999999996 67999999999999999976 444444
Q ss_pred ccccccchHHHHHHHhHHHHHHHHHHh-hcc--cCChhHHHhcCChHHHHHHHHHHh-----------------------
Q 011308 199 PAKEILGWWRICFWVATIPAAFLALFM-EFC--AESPHWLFKRGRGAEAEAELERLF----------------------- 252 (489)
Q Consensus 199 ~l~~~~~~Wr~~f~~~~~~~~~~~~~~-~~~--~e~~~~~~~~~~~~~~~~~~~~~~----------------------- 252 (489)
++. .+ |+..|++.++..++..++. .++ |+.+++..++++.++.++..++..
T Consensus 178 l~~--~~-~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~ 254 (591)
T PTZ00207 178 FFS--DN-TSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILII 254 (591)
T ss_pred HHH--Hh-HHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHH
Confidence 443 34 8888888887777665543 334 443443323322222211100000
Q ss_pred ---------------CC--------------------------------CCc-hHHHHHH---------hhhh-------
Q 011308 253 ---------------GG--------------------------------LHV-KYSMAEL---------SKSE------- 268 (489)
Q Consensus 253 ---------------~~--------------------------------~~~-~~~~~~~---------~~~~------- 268 (489)
.. ... +.+.++. .+.+
T Consensus 255 l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (591)
T PTZ00207 255 LIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETD 334 (591)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccccccc
Confidence 00 000 0000000 0000
Q ss_pred -h-ccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc-CCC--C--Cc-hhHHHHHHHHHHHHH
Q 011308 269 -R-GDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA-GVP--S--DS-GNICVGIANLSGSII 340 (489)
Q Consensus 269 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~-~~~~~~~~~~~~~~~ 340 (489)
+ ...+...++.+.+++..+|.+++.+++........ ..-+.++.+.. |.+ . .. ...+.++++.+|++.
T Consensus 335 ~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~----~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~ 410 (591)
T PTZ00207 335 VDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVI----IFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLC 410 (591)
T ss_pred ccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchhee----eecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHH
Confidence 0 00111126777778888888777766655533322 22233444444 542 2 22 567889999999999
Q ss_pred HHHHHhhhCCc--------hhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccC
Q 011308 341 AMILMDKLGRR--------VLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIF 412 (489)
Q Consensus 341 ~g~l~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (489)
.|++.....+| .........+.++.+++.+... ...+.+..++.+++++..+. +....++|++
T Consensus 411 ~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p--------~~~L~~~~~lvg~~~G~~~~-~~~~i~selF 481 (591)
T PTZ00207 411 MSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLP--------KAALPLPYFIAAFANGFMAA-TIALVTRTIF 481 (591)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCC--------ccHhHHHHHHHHHHhhHhHH-HHHHHHHHHh
Confidence 99987332222 2222222224444444433321 01255566666666665543 5556789999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh----------c---cchhhHHHHHHHHHHHHHhhhcccCC
Q 011308 413 PNRIRAKAMAVCMAVHWVINFFV-GLLFLRLLEQL----------G---PLILYTIFGSFCFLAVIYVKRNVMET 473 (489)
Q Consensus 413 p~~~~~~~~g~~~~~~~~g~~~~-~~~~g~l~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (489)
. ++-|+-.-+.....-+|+.+. -.+.|.++|+- | ++.+|++.+++++++.+......-++
T Consensus 482 g-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 482 A-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY 555 (591)
T ss_pred c-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence 9 888888888887777777666 66788888753 1 56789999999999887765544343
No 98
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.93 E-value=2.1e-24 Score=209.76 Aligned_cols=405 Identities=11% Similarity=0.042 Sum_probs=230.2
Q ss_pred HHHHHhhhhccccccccchhh-hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHHHHHH
Q 011308 55 VAIISSFLFGYHLGVVNETLE-SISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~ 132 (489)
.+++..+...+......+.++ .+.+++|++.++. +++.+.+........+++|+++|| +|||+++..+.++.+++.
T Consensus 25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~ 102 (500)
T PRK09584 25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY 102 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 444444555555444555544 4458899987776 777877776666667899999999 599999999999999999
Q ss_pred HHHhhhh-hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccc--hhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308 133 SMSAITK-NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYV--RGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI 209 (489)
Q Consensus 133 ~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~ 209 (489)
+++++++ +.+.+.++|+++|+|.|...+...+++.|++|+++ |..++++++.+.++|..++|.+++++.+..| ||+
T Consensus 103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~ 181 (500)
T PRK09584 103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSV 181 (500)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHH
Confidence 9998874 56677788999999999988999999999998643 4567889999999999999999999999888 999
Q ss_pred HHHHhHHHHHHHHHHhh----cccCChhHHHhcCChHHHHHHHH------------H-HhCCCCchHHHHHHhhhh--hc
Q 011308 210 CFWVATIPAAFLALFME----FCAESPHWLFKRGRGAEAEAELE------------R-LFGGLHVKYSMAELSKSE--RG 270 (489)
Q Consensus 210 ~f~~~~~~~~~~~~~~~----~~~e~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~--~~ 270 (489)
.|++.++..++..+... .++|.++. .++++.+..+... . .................. ..
T Consensus 182 ~F~i~~i~~~i~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (500)
T PRK09584 182 AFALSVVGMLITVVNFAFCQRWVKQYGSK--PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVI 259 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhccCCCC--CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 99997765444332222 23332110 0000011111000 0 000000000000000000 00
Q ss_pred cchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh------cCCC--CCchhHHHHHHHHHHHHHHH
Q 011308 271 DEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN------AGVP--SDSGNICVGIANLSGSIIAM 342 (489)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~g 342 (489)
........++.-+++... . +..++.....+..+...+.++.....+ .|.. .+....+..+..++..++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~ 337 (500)
T PRK09584 260 FGKEAFAMKGAARRKMIV-A-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILA 337 (500)
T ss_pred HHHHHhhcCHHHHHHHHH-H-HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHH
Confidence 000000000000111111 1 111121222222223333332221111 1111 22244455555556666654
Q ss_pred HHHhhhC----CchhHHHHHHHHHHHHHHHHHHhhcccC-CCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhH
Q 011308 343 ILMDKLG----RRVLLLGSFLGMAIAMGVQAIAATSFVS-SSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIR 417 (489)
Q Consensus 343 ~l~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 417 (489)
++-+|.+ ..+.+..+.++.+++++.+......... ...+.++.+....+.+.+- ....|....++.+..|++.|
T Consensus 338 ~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge-~~~~p~g~s~~~~~aP~~~r 416 (500)
T PRK09584 338 AIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGE-LMISGLGLAMVAQLVPQRLM 416 (500)
T ss_pred HHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCcHHHH
Confidence 4444444 4466777888888887777665432111 1122333444444444443 34456777788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhccchhhHHHHHHHHHHHHHhh
Q 011308 418 AKAMAVCMAVHWVINFFVGLLFLRLL----------EQLGPLILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 418 ~~~~g~~~~~~~~g~~~~~~~~g~l~----------~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
|.++|+......+|..++..+.+... ...++...|...++++++..++.+
T Consensus 417 g~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~ 476 (500)
T PRK09584 417 GFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML 476 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999887777777776666654221 112356677777766655544443
No 99
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.92 E-value=1.2e-22 Score=189.91 Aligned_cols=375 Identities=20% Similarity=0.248 Sum_probs=250.7
Q ss_pred HHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccC-chhHhhhhhHHHHHHHHHHh
Q 011308 58 ISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIG-RRRAFQLCALPMIIGASMSA 136 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~i~~~~~~ 136 (489)
..+++..+..+...|.++.+.++.|.|..|+ |.+.+...+...++++++|.++||++ +||++.+..++.++...+..
T Consensus 9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~ 86 (400)
T PF03825_consen 9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA 86 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777888999999999988888 99999999999999999999999986 57888788888888777778
Q ss_pred hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHh-hcccccccc--hHHHHHHH
Q 011308 137 ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFV-GLPAKEILG--WWRICFWV 213 (489)
Q Consensus 137 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~-~~~l~~~~~--~Wr~~f~~ 213 (489)
..++++.+++.-++..+...+..|...++..+...+ +++-.|-.....++|.+++... ++.+....+ ...+.+++
T Consensus 87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i 164 (400)
T PF03825_consen 87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI 164 (400)
T ss_pred HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence 888999998888888888888888888888888753 2333344444445555544322 111111111 02355666
Q ss_pred hHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308 214 ATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG 293 (489)
Q Consensus 214 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (489)
.+...++.....+.+|+.|+ ++. .++..++....+..+++|+|++...++.
T Consensus 165 ~~~~~~ll~~~~l~lp~~~~---~~~--------------------------~~~~~~~~~~~~~~~llk~~~~~~Fll~ 215 (400)
T PF03825_consen 165 AAILSLLLAGFALFLPKTPP---KRS--------------------------AKESVKKLLGLDALKLLKNPRFLVFLLA 215 (400)
T ss_pred HHHHHHHHHHHHHhCCCCcc---ccc--------------------------cCCCcccccchHHHHHhcCccHHHHHHH
Confidence 66665555555556777652 000 0001111122234568888888766666
Q ss_pred HHHHHhhhhcchhHHHHhHHHHHHhcC-CCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 011308 294 STLFALQQLSGINAVFYFSSTVFKNAG-VPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQA 369 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 369 (489)
.++... .......|.+.++++.| .+... ...+..+++++.-...+++.+|+|.|+++..+.+..++=..++.
T Consensus 216 ~~l~~~----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a 291 (400)
T PF03825_consen 216 AFLIGI----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA 291 (400)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 655554 34455666677777766 44333 33445577888888999999999999999999888887777766
Q ss_pred HHhhcccCCCcch-hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Q 011308 370 IAATSFVSSSGAL-SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAV-HWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 370 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g 447 (489)
...... ... ...+....+-+..++.... ....++.+..|++.|+++.++++.. ..+|..+|..++|++.|+.|
T Consensus 292 ~~~~~~----~~~~~~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g 366 (400)
T PF03825_consen 292 YFSDPW----PFIVALQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG 366 (400)
T ss_pred HhcCCc----HHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 542110 000 1111222345555554433 3345899999999999999999886 46899999999999999987
Q ss_pred cch------hhHHHHHHHHHHHHHhhhcccCCC
Q 011308 448 PLI------LYTIFGSFCFLAVIYVKRNVMETK 474 (489)
Q Consensus 448 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 474 (489)
.+. .+.+.+++.++..++..++.||++
T Consensus 367 ~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 367 ARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 553 445555555555555555555443
No 100
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.91 E-value=9.3e-22 Score=185.99 Aligned_cols=392 Identities=14% Similarity=0.125 Sum_probs=253.1
Q ss_pred HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc----ccCchhHhhhh-hHHHH
Q 011308 55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD----GIGRRRAFQLC-ALPMI 129 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~ 129 (489)
.++...+-..+......+.++.+.+++|.+.... +++..+..+...+.+++.|+++| |+||||.++.+ .....
T Consensus 8 ~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~ 85 (477)
T TIGR01301 8 RVASVAAGVQFGWALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence 3333444445566667777788889999987766 99999999999999999999999 59999998875 66666
Q ss_pred HHHHHHhhhhhHH-----------------HHHHHHHHHhhcccchhhhHHHHHHhcCCccch--hhHHHHHHHHHHHHH
Q 011308 130 IGASMSAITKNLW-----------------GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVR--GAYGSSTQIAACLGI 190 (489)
Q Consensus 130 i~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~ 190 (489)
++.++.+++++.. .++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.
T Consensus 86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ 165 (477)
T TIGR01301 86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN 165 (477)
T ss_pred HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence 6767777766643 222333344457777788889999999998765 579999999999999
Q ss_pred HHHHHhhccc--cccc------------chHHHHHHHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCC
Q 011308 191 LVALFVGLPA--KEIL------------GWWRICFWVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGL 255 (489)
Q Consensus 191 ~i~~~~~~~l--~~~~------------~~Wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (489)
++|+.+++.. .+.. .+.|+.|++.++..++..+.. +..+|.|.. ..++.++ +
T Consensus 166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~~~~~~--~--------- 232 (477)
T TIGR01301 166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI--GSDDFIN--S--------- 232 (477)
T ss_pred HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC--ccccchh--h---------
Confidence 9999998764 1111 026899999888777766554 457886521 0000000 0
Q ss_pred CchHHHHHHhhhhhccchhhhhHHhhhc-----cccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh--cCCCC-----
Q 011308 256 HVKYSMAELSKSERGDEADAVKFSELIS-----PRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN--AGVPS----- 323 (489)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----- 323 (489)
+.++.+ +......++++++ ++..+.+.+..++.++. ...+.+|.+++..+ .+.+.
T Consensus 233 -------~~~~~~--~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a----~f~~~~y~T~~vg~~v~~~~~~~~~~ 299 (477)
T TIGR01301 233 -------EAAPPS--KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIA----WFPFILFDTDWMGREVYGGSVNQGAK 299 (477)
T ss_pred -------hccccc--ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHH----HHHHHHhccHHHHHHHcCCCCcchhH
Confidence 000000 0001112222222 34455555555555543 33344444444432 11111
Q ss_pred ---C----c-hhHHHHHHHHHHHHHHHHHHhhhCC-chhHHHHHHHHHHHHHHHHHHhhcccC------------CC-cc
Q 011308 324 ---D----S-GNICVGIANLSGSIIAMILMDKLGR-RVLLLGSFLGMAIAMGVQAIAATSFVS------------SS-GA 381 (489)
Q Consensus 324 ---~----~-~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~ 381 (489)
+ . .....++...+.+++..++.+|+|+ |+....+.++.++++....+......+ +. ..
T Consensus 300 y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 379 (477)
T TIGR01301 300 YDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGI 379 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhh
Confidence 1 1 2334445555777778888999985 677688878888777777655431100 00 01
Q ss_pred hhHHHHHHHHHHHHHhcCCCcchhhhhcccCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhhHHHHH
Q 011308 382 LSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPN--RIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG--PLILYTIFGS 457 (489)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~ 457 (489)
.+..+..+.+.+..+... ..+.++++++..++ +..|..+|+.|.+..+...+.....|.+.+..| ....+.+.++
T Consensus 380 ~~~~l~~~~~~Gi~~A~~-~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv 458 (477)
T TIGR01301 380 KASALIVFAILGIPLAIT-YSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAV 458 (477)
T ss_pred HHHHHHHHHHhhHHHHHH-HHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHH
Confidence 244455555556655533 34677788888884 456999999999999999999998888777666 4556677777
Q ss_pred HHHHHHHHhhhcccCCCC
Q 011308 458 FCFLAVIYVKRNVMETKG 475 (489)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~ 475 (489)
..++++++.++.+|+++.
T Consensus 459 ~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 459 AAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHhCCCCCC
Confidence 788888888888887654
No 101
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.91 E-value=3.9e-24 Score=178.72 Aligned_cols=391 Identities=17% Similarity=0.116 Sum_probs=248.2
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhh
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCA 125 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~ 125 (489)
.++...+..+|+..|-++++.........+..+|.+++.++. .++.+.|..-..+-+++.|++.|| +|-|..-++-+
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~ 117 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILC 117 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHH
Confidence 456777888888889999999888888889999999988888 799999999999999999999996 78777766666
Q ss_pred HHHHHHHHHHh---hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308 126 LPMIIGASMSA---ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE 202 (489)
Q Consensus 126 ~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 202 (489)
....+|.++++ .++.+|++..+|++.|+|.-...++-+.++..|+..||.+.++|+.....-+|..+-..+.+++.+
T Consensus 118 ~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~ 197 (459)
T KOG4686|consen 118 IFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD 197 (459)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence 66677777665 478999999999999999888888889999999999999999999999999998887777777766
Q ss_pred ccchHHHHH-HHhHHHHHHHHHHhhcccCChhHHHhcCC-hHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHh
Q 011308 203 ILGWWRICF-WVATIPAAFLALFMEFCAESPHWLFKRGR-GAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSE 280 (489)
Q Consensus 203 ~~~~Wr~~f-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (489)
..+. ..= ..-..+++...+-...+..+-......+- .+.+++.+.+ ++....+.....+
T Consensus 198 ~~~~--~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~-----------------e~g~~Ge~pkLtd 258 (459)
T KOG4686|consen 198 TMGR--MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHL-----------------EEGFLGEEPKLTD 258 (459)
T ss_pred HHHH--hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh-----------------hcCcccCCccccc
Confidence 5431 100 00000000000000000000000000110 0111111111 1111111111111
Q ss_pred hhc-cccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHH
Q 011308 281 LIS-PRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLG 356 (489)
Q Consensus 281 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 356 (489)
... .+.+|.+.+.++++....+-.+..-+.+.+ +..|+++.. +.........+.+++.|.++||+|++...+.
T Consensus 259 v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~---~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~ 335 (459)
T KOG4686|consen 259 VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQ---KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVA 335 (459)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHH---HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHH
Confidence 111 356676666666665543333333333333 335555444 5555555666788889999999999876654
Q ss_pred HH-HHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHH
Q 011308 357 SF-LGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFV 435 (489)
Q Consensus 357 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 435 (489)
+. +....+-..+.+.... ....+.+.+..++...- ..+.+++-+.|+++.|++.|.++.+.++|-.+.
T Consensus 336 ~a~~~tl~~H~~l~Ft~ls----------Py~~m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i 404 (459)
T KOG4686|consen 336 SACILTLLGHSGLFFTFLS----------PYTSMTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFI 404 (459)
T ss_pred HHHHHHHHHhhhHHhhhcc----------HHHHHHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHH
Confidence 44 3344444444433221 34455555555543321 234567778899999999999999999999999
Q ss_pred HHHHHHHHHHhc-c---chhhHHHHHHHHHHHHHhhhcccC
Q 011308 436 GLLFLRLLEQLG-P---LILYTIFGSFCFLAVIYVKRNVME 472 (489)
Q Consensus 436 ~~~~g~l~~~~g-~---~~~~~~~~~~~~~~~~~~~~~~~~ 472 (489)
|++.|.+.|.-| + ...|.....+++....+.+...++
T Consensus 405 ~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 405 PIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred hhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheecc
Confidence 999999998766 3 223444444444444444443333
No 102
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.90 E-value=9.2e-23 Score=196.61 Aligned_cols=382 Identities=14% Similarity=0.071 Sum_probs=240.2
Q ss_pred HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccC-----chhHhhhhhHH
Q 011308 53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIG-----RRRAFQLCALP 127 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~ 127 (489)
..++...++..++.........|.+.+++|++.++. +...+...+...+-.+ +|+++||++ ||+.++++.++
T Consensus 28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 344455567777773334455667777899999888 8889999999988665 999999998 78878888776
Q ss_pred HH-HHHHHHhhhhhHHHHH-HHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHH---HHHHHHHHHHHhhccccc
Q 011308 128 MI-IGASMSAITKNLWGML-LGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQI---AACLGILVALFVGLPAKE 202 (489)
Q Consensus 128 ~~-i~~~~~~~~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~---~~~~G~~i~~~~~~~l~~ 202 (489)
.+ +.....+..++..... +.+++.+++.+...++..++..|..+ +++....+.... ...+|.++++.+++.+.+
T Consensus 105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 4434444445544444 48899999999999999999999998 555544333333 345899999999999998
Q ss_pred ccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhh
Q 011308 203 ILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELI 282 (489)
Q Consensus 203 ~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (489)
..+ ||..|++.++..++..+...+++|++....++.+.++.... . . .. .......++.....++.+
T Consensus 184 ~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~-~--------~---~~-~~~~~~~~~~~~~l~~~l 249 (468)
T TIGR00788 184 KTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM-A--------L---LT-LGVLANVKVQILGLRGAI 249 (468)
T ss_pred hcC-cchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh-h--------h---hh-hhHHHHHHHHHHHHHHHH
Confidence 888 99999998888777755566677753110001000000000 0 0 00 000000011122344456
Q ss_pred ccccccchhhhHHH-HHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHH
Q 011308 283 SPRNFGVVFIGSTL-FALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSF 358 (489)
Q Consensus 283 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~ 358 (489)
++|..+..+...++ +... ........++.+ +..|.++.. .....+++.+++..+.+++.+|++.|+.+..+.
T Consensus 250 ~~~~i~~~l~fifl~~~~~-~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~ 325 (468)
T TIGR00788 250 QLLEIAKPLIFIFLSYANL-PGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTT 325 (468)
T ss_pred hcHHHHHHHHHHHHHHhhc-CCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 66666554333333 1111 111110101112 235555554 455566888888889999989999999888888
Q ss_pred HHHHHHHHHHHHHhhcccCC--CcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Q 011308 359 LGMAIAMGVQAIAATSFVSS--SGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVG 436 (489)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 436 (489)
++.+++.+........+... ....+.......+...+.+....+. ..++.+..|++.+|+..|+.+++.++|..+++
T Consensus 326 ~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~ 404 (468)
T TIGR00788 326 LLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSG 404 (468)
T ss_pred HHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHH
Confidence 77776654432221111100 0112233334445555555555555 45788999999999999999999999999999
Q ss_pred HHHHHHHHHhc-----cchhhHHHHH
Q 011308 437 LLFLRLLEQLG-----PLILYTIFGS 457 (489)
Q Consensus 437 ~~~g~l~~~~g-----~~~~~~~~~~ 457 (489)
.+++.+.+..| ++..+....+
T Consensus 405 ~~gg~l~~~~g~~~~~~~~~~~~i~i 430 (468)
T TIGR00788 405 FLGVLLMETIGITCDNSNNLWLLILG 430 (468)
T ss_pred HHHHHHHHHcCCCcccccchHHHHHH
Confidence 99999999888 6555554433
No 103
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.90 E-value=3.5e-21 Score=182.88 Aligned_cols=405 Identities=14% Similarity=0.078 Sum_probs=224.6
Q ss_pred HHHHHHhhhhccccccccchhhhh-hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-CchhHhhhhhHHHHHH
Q 011308 54 LVAIISSFLFGYHLGVVNETLESI-SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-GRRRAFQLCALPMIIG 131 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~i~ 131 (489)
..++...+...+........+|.+ .+++|+++.+. +.+.+.+.....++++++|+++||+ ||||++.++.++..++
T Consensus 12 ~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg 89 (493)
T PRK15462 12 YYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG 89 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 334444444445544455556655 55688887777 8999999999999999999999999 9999999999999999
Q ss_pred HHHHhhhh-hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCcc--chhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308 132 ASMSAITK-NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAY--VRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR 208 (489)
Q Consensus 132 ~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr 208 (489)
.++.+..+ +...+.++..+.++|.|...+...++++|.+|++ +|..++++...+.++|..++|.+.+++.+..| ||
T Consensus 90 ~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~ 168 (493)
T PRK15462 90 HVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WA 168 (493)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hH
Confidence 87776543 2233444444555666777777889999999875 68999999999999999999999999998888 99
Q ss_pred HHHHHhHHHHHHHHHHhhcccCChhHH-HhcCChHHHHHHHHHHhCCCCchH-----HHHH-Hhhhhhccch-----h-h
Q 011308 209 ICFWVATIPAAFLALFMEFCAESPHWL-FKRGRGAEAEAELERLFGGLHVKY-----SMAE-LSKSERGDEA-----D-A 275 (489)
Q Consensus 209 ~~f~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~-----~-~ 275 (489)
+.|.+.++..++..+..++..+..... ..++++.+.++............. -... ..+......- . .
T Consensus 169 ~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (493)
T PRK15462 169 MGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGL 248 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987654443333322211110000 000000000000000000000000 0000 0000000000 0 0
Q ss_pred h----hHHhhhc--cccccchhhh----HHHHHhhhhcchhHHHHhHHHHHHh--cC--CCCCchhHHHHHHHHHHHHHH
Q 011308 276 V----KFSELIS--PRNFGVVFIG----STLFALQQLSGINAVFYFSSTVFKN--AG--VPSDSGNICVGIANLSGSIIA 341 (489)
Q Consensus 276 ~----~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~ 341 (489)
. -.+.-.+ .|+....++. ..+++..+....+.+..|.....+. .| .+++....+..+..++.+++.
T Consensus 249 ~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~ 328 (493)
T PRK15462 249 GVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFL 328 (493)
T ss_pred HHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHH
Confidence 0 0000000 0111111111 1222222222222333333222211 12 233335666667777777777
Q ss_pred HHHHhhhCC--ch-----hHHHHHHHHHHHHHHHHHHhhcccC-CCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC
Q 011308 342 MILMDKLGR--RV-----LLLGSFLGMAIAMGVQAIAATSFVS-SSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP 413 (489)
Q Consensus 342 g~l~d~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 413 (489)
.++-.|..+ |. -...+.++.+++++++.+....... ...+.++.+....+. .....+..|+..+.++++.|
T Consensus 329 a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~-t~gEl~~sPvgls~~~~laP 407 (493)
T PRK15462 329 AWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVM-GFAELFIDPVAMSQITRIEI 407 (493)
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH-HHHHHHHChHHHHHHHHhCh
Confidence 777566532 21 2566777778887777665433221 113444444444333 33445677898999999999
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------------HhccchhhHHHHHHHHHH
Q 011308 414 NRIRAKAMAVCMAVH-WVINFFVGLLFLRLLE------------QLGPLILYTIFGSFCFLA 462 (489)
Q Consensus 414 ~~~~~~~~g~~~~~~-~~g~~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~ 462 (489)
++.+|..+|+..... .+|..++..+.+.... ...+...|...+.+.++.
T Consensus 408 ~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 408 PGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence 999999999986533 4555555555443321 012344566666655544
No 104
>PRK09669 putative symporter YagG; Provisional
Probab=99.90 E-value=6.5e-22 Score=191.14 Aligned_cols=333 Identities=14% Similarity=0.103 Sum_probs=212.0
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc----cCch-hHhhhhhHHHHHHHHHHhhhhh------H
Q 011308 73 TLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG----IGRR-RAFQLCALPMIIGASMSAITKN------L 141 (489)
Q Consensus 73 ~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~------~ 141 (489)
..+.+.+++|++.... |.+.++..+..++..|+.|+++|| +||| +.++.+.+..+++.++....++ +
T Consensus 32 l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 32 LAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 4556778899998877 999999999999999999999998 7874 5555677777777665544432 4
Q ss_pred HHHHHHHHHHhhcccchhhhHHHHHHhcC-CccchhhHHHHHHHHHHHHHHHHHHhhccccc-------ccchHHHHHHH
Q 011308 142 WGMLLGRLFVGTGMGIGPAVAALYVSEVS-PAYVRGAYGSSTQIAACLGILVALFVGLPAKE-------ILGWWRICFWV 213 (489)
Q Consensus 142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~-------~~~~Wr~~f~~ 213 (489)
..+++..++.+.+.........++..|+. ++++|.+..++...+..+|..+++.+...+.. ..+ |+..+.+
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g-~~~~~~i 188 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG-YFYAMMV 188 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHH
Confidence 45556666667666666666778999988 45889988888888878877777654433222 234 8888888
Q ss_pred hHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308 214 ATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI 292 (489)
Q Consensus 214 ~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
.+++.++..+..++ .+|.++. +++++.+....++++++++.++....
T Consensus 189 ~~ii~~v~~~~~~~~~~e~~~~--------------------------------~~~~~~~~~~~~~~~~~n~~~~~l~~ 236 (444)
T PRK09669 189 MGLLGVVLFFCCFFMTKERYTP--------------------------------EVDNSSSVWKDLKLLLGNSQWRIMFI 236 (444)
T ss_pred HHHHHHHHHHHHhCCeEEecCC--------------------------------CCcCCCCHHHHHHHHhCCchHHHHHH
Confidence 77776665544333 4443210 00011223345677888888877665
Q ss_pred hHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHh
Q 011308 293 GSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAA 372 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (489)
..++.............+|..+.++... ..........+..+++.++.+++.||+|+|+....+.++..+....+.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 315 (444)
T PRK09669 237 FNVVLLTAVVTRGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP 315 (444)
T ss_pred HHHHHHHHHHHHhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 5544433222112222222222221100 001122333466678888899999999999988877665544333222211
Q ss_pred hcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 373 TSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (489)
..+.+..++...+.+.+.+. ..+..+++++|..+ .+..|...|..+++..+|..+++.+.|.+.+.
T Consensus 316 ------~~~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 316 ------PSNVWLIFALNILFNFIQNL-TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred ------cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223334444444554443 33566677777764 34457788999999999999999999999998
Q ss_pred hcc
Q 011308 446 LGP 448 (489)
Q Consensus 446 ~g~ 448 (489)
.|+
T Consensus 389 ~Gy 391 (444)
T PRK09669 389 VDY 391 (444)
T ss_pred cCC
Confidence 876
No 105
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.89 E-value=5e-22 Score=181.78 Aligned_cols=378 Identities=17% Similarity=0.182 Sum_probs=237.2
Q ss_pred HHHHHhhhhccccccccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH--HH
Q 011308 55 VAIISSFLFGYHLGVVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI--IG 131 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~--i~ 131 (489)
......+...+..+...|..|...++ .|++.+++ |.+.++..+...+.+++.|.++||+|.||-++....+.. .+
T Consensus 11 ~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~ 88 (412)
T PF01306_consen 11 WLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFG 88 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence 33444555556677778888877765 89998888 999999999999999999999999997776554432221 22
Q ss_pred H-HHHhhh----hhHH-HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 132 A-SMSAIT----KNLW-GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 132 ~-~~~~~~----~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
. +...+. .|++ ..+++-+..|+......|+..+++.++. ++.+.=.|-.....++|.+++..++|.+.+..+
T Consensus 89 pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p 166 (412)
T PF01306_consen 89 PFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINP 166 (412)
T ss_dssp HHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCc
Confidence 2 222222 2322 2333444455555666677777766664 333445566667788888999999998887654
Q ss_pred hHHHHHHHhHHHHHHHHHHhhcc-cCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308 206 WWRICFWVATIPAAFLALFMEFC-AESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP 284 (489)
Q Consensus 206 ~Wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (489)
+..||+....+++..++.++. |+.++....++ .+..++++.......+++|+
T Consensus 167 --~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~l~k~ 219 (412)
T PF01306_consen 167 --NIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD-------------------------ALGAKKDKVSLKDVLSLFKM 219 (412)
T ss_dssp --HHHHHHHHHHHHHHHHHHHSS---SSSSS-SST-------------------------TSSS------HHHHHHHTTS
T ss_pred --cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc-------------------------ccccCCCCCcHHHHHHHhcc
Confidence 678887666655555444443 33321000000 00001111122345678888
Q ss_pred ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCC----Cc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHH
Q 011308 285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPS----DS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGS 357 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 357 (489)
|++|.+.+....... .+.......+.++...--+. .. ....-.+...+...+..++.+|+|.|+.++++
T Consensus 220 ~~fw~~~l~v~g~~~----~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla 295 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAA----IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA 295 (412)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH
Confidence 988876554443333 23333333333333322222 22 33444467778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHH-HHHHHHHHHHHH
Q 011308 358 FLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVC-MAVHWVINFFVG 436 (489)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~ 436 (489)
..++.+=.++.++... ++.+...-.+-+..+.....+.. -|+++.+|++..++...+. +...+++..+.+
T Consensus 296 g~i~~iRi~~~~~~~~--------~~~i~~~klLH~~e~~l~lva~f-kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s 366 (412)
T PF01306_consen 296 GVIMAIRIIGSGFATN--------PWVISLIKLLHALEFPLLLVAAF-KYITAHFDKRLSATLYLVGFQFAKQIGIIILS 366 (412)
T ss_dssp HHHHHHHHHHHHT--S--------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcc--------hHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888777776543 23455555555555554443333 3889999999999999885 678899999999
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCC
Q 011308 437 LLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGK 476 (489)
Q Consensus 437 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (489)
.+.|.+.|+.|++..|++.+.+.++..++..+.+++.++.
T Consensus 367 ~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 367 PLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred hhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 9999999999999999999998888888777776665543
No 106
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.89 E-value=9e-21 Score=170.15 Aligned_cols=397 Identities=15% Similarity=0.074 Sum_probs=270.5
Q ss_pred CCCcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhh
Q 011308 44 PPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQL 123 (489)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~ 123 (489)
+-.++||.+++..++..+.+.+....+++.......-++ +.+.. -|..-+|++.+....+++-|+.|++|-|..+++
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll 114 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL 114 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence 356788999999999999998888888888877777888 44444 699999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhh------hHH--HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHH
Q 011308 124 CALPMIIGASMSAITK------NLW--GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALF 195 (489)
Q Consensus 124 ~~~~~~i~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~ 195 (489)
+.++.++|..+-..+. .++ ....+..+.+.++-.....-..+..-||+++||..+..+-..+..+|.+++.+
T Consensus 115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l 194 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL 194 (480)
T ss_pred HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence 9999999999876653 344 56678888888877777676788889999999999999999999999999999
Q ss_pred hhccccccc----c-hHHH--HHHHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhh
Q 011308 196 VGLPAKEIL----G-WWRI--CFWVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKS 267 (489)
Q Consensus 196 ~~~~l~~~~----~-~Wr~--~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (489)
+...+..+. + .|-. .|+....+..+.+++. +..++.|+. . +..+ ..
T Consensus 195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t---P--ps~s---------------------~~ 248 (480)
T KOG2563|consen 195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT---P--PSAS---------------------QA 248 (480)
T ss_pred ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---C--Cchh---------------------Hh
Confidence 988887654 1 1544 3443343333333332 223332220 0 0000 00
Q ss_pred hhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCC---CCCchhHHHHHHHHHHHHHHHHH
Q 011308 268 ERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGV---PSDSGNICVGIANLSGSIIAMIL 344 (489)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l 344 (489)
...+..-..+.++.++++++....+++.+... .++.....+...+...+. .++....+..+++++++.+.|.+
T Consensus 249 ~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g----~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii 324 (480)
T KOG2563|consen 249 ALQDASFPKSIKSCFKNRQFIILAICYGIGLG----LFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGII 324 (480)
T ss_pred hhhcCcHHHHHHHHHcCccHHHHHHHHhhhHH----HHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhh
Confidence 00122355678888999988766555544433 344444444433444444 35557778888999999999999
Q ss_pred HhhhCCc-hhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH
Q 011308 345 MDKLGRR-VLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV 423 (489)
Q Consensus 345 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~ 423 (489)
.||.++- ...+.......++.+. ....... ....+++.... ...+.++.+..|+-..+..|..-|..-++..|+
T Consensus 325 ~Dktk~fk~~~~v~~~~~~v~~~~-l~~~t~~---~~~~viv~~t~-~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGl 399 (480)
T KOG2563|consen 325 ADKTKKFKLTTLVLYLFALVGTLM-LLTCTLF---LGDSVIVFTTC-GLLGFFGTGYLPIGFELGVETTYPVAEGTSSGL 399 (480)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH-HHHhhcc---CCceEehhhhH-HHHHHhhcCCCCcceeeeeeeccccCCccccee
Confidence 9998753 3344443333333211 1111111 11222233323 333344556778888788888666778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----cchhhHHHHHHHHHHHHHhhhcccCCCCCCH
Q 011308 424 CMAVHWVINFFVGLLFLRLLEQLG----PLILYTIFGSFCFLAVIYVKRNVMETKGKTL 478 (489)
Q Consensus 424 ~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (489)
.+..+++-+.+-.++.+...+..+ +...-+.....+++..++..+++++.++++.
T Consensus 400 l~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~ 458 (480)
T KOG2563|consen 400 LNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRA 458 (480)
T ss_pred EEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence 999999999999999999988877 5555556666666666666666655544433
No 107
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.87 E-value=2e-20 Score=179.84 Aligned_cols=338 Identities=17% Similarity=0.142 Sum_probs=247.3
Q ss_pred chhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc----ccCchhHh-hhhhHHHHHHHHHHhhh-h------
Q 011308 72 ETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD----GIGRRRAF-QLCALPMIIGASMSAIT-K------ 139 (489)
Q Consensus 72 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l-~~~~~~~~i~~~~~~~~-~------ 139 (489)
...+.+.+.+|+++... |++..+..+..++..|+.|.++| |+||||.. +.|.+..+++.+++... +
T Consensus 23 ~~~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~ 100 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT 100 (428)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence 34566677779988777 99999999999999999999999 89976655 46778888877777655 3
Q ss_pred -hHHHHHHHHHHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHHHHHHHHHHHHhhcccccccc------hHHHHH
Q 011308 140 -NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIAACLGILVALFVGLPAKEILG------WWRICF 211 (489)
Q Consensus 140 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~------~Wr~~f 211 (489)
....+.+.-++..++.........++..|..+ +++|.+..+....+..+|..+...+.+.+.+..+ +|++..
T Consensus 101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~ 180 (428)
T PF13347_consen 101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA 180 (428)
T ss_pred hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence 23335666777788888888888999999997 5789999999999988888766666666553322 389999
Q ss_pred HHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccch
Q 011308 212 WVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVV 290 (489)
Q Consensus 212 ~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (489)
++.+++.++..+...+ .+|.++ + .++++++.+....+++++++|.++..
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke~~~------~------------------------~~~~~~~~~~~~~~~~~~~nr~~~~l 230 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKERSV------E------------------------VTEQEKKISLRDSLRSLFRNRPFRIL 230 (428)
T ss_pred HHHHHHHHHHhhhhhheeeeccc------c------------------------ccccccccccccchhhhcccchHHHH
Confidence 9888888777665444 666211 0 11112222334567888899998888
Q ss_pred hhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHH
Q 011308 291 FIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAI 370 (489)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 370 (489)
....++.............+|..+.+++.+. .+.......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~-~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~ 309 (428)
T PF13347_consen 231 LLAFFLQWLAFALMNTFLPYYFTYVLGNEGL-ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF 309 (428)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHhcCchh-hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence 8777777666555555666666666655422 223555667888899999999999999999999999998888887776
Q ss_pred HhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 371 AATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (489)
... .+.+..++...+.+.+.+... ....++.+|..+ ++..|..+|+.++...++..+++.+.+.+.
T Consensus 310 ~~~------~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 310 LGP------GSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred HHh------hhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 642 233445555556666655443 456667777765 344699999999999999999999999998
Q ss_pred HHhccc
Q 011308 444 EQLGPL 449 (489)
Q Consensus 444 ~~~g~~ 449 (489)
+..|+.
T Consensus 383 ~~~Gy~ 388 (428)
T PF13347_consen 383 ALVGYD 388 (428)
T ss_pred HHhCcC
Confidence 877653
No 108
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.86 E-value=7.3e-19 Score=167.64 Aligned_cols=348 Identities=17% Similarity=0.144 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhh-hHHHHHHHHHHhhh--hhHHHHHHHHHHHhhcccchhhhHHHHHH
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLC-ALPMIIGASMSAIT--KNLWGMLLGRLFVGTGMGIGPAVAALYVS 167 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~-~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 167 (489)
++..++..+..++..|+.|.++|+-|+||.++.. ..+..+++.+..+. .+++...+.-++.-++.+...+...+++.
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP 152 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLP 152 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 6778888899999999999999999987776655 44445566666553 34544445556666777778888899999
Q ss_pred hcCCccch--------------------------hhHHHHHHHHHHHHHHHHHHhhcccccccch-------HHHHHHHh
Q 011308 168 EVSPAYVR--------------------------GAYGSSTQIAACLGILVALFVGLPAKEILGW-------WRICFWVA 214 (489)
Q Consensus 168 ~~~~~~~r--------------------------~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-------Wr~~f~~~ 214 (489)
|..+++++ ++..+.-.....+|.++...+.-.+....+. -|..+.+.
T Consensus 153 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~ 232 (477)
T PF11700_consen 153 DLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIV 232 (477)
T ss_pred hhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHH
Confidence 99998888 8888888888888887776665444322111 48888887
Q ss_pred HHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308 215 TIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG 293 (489)
Q Consensus 215 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (489)
++.-++..+. .+++||.|+....++..+-.+. .-++-...++++.+.|.....+++
T Consensus 233 a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~-----------------------g~~~l~~t~k~~~~~~~~~~fLia 289 (477)
T PF11700_consen 233 ALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRF-----------------------GFKRLWRTFKEIRKLRQLFLFLIA 289 (477)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHH-----------------------HHHHHHHHHHHHHhChHHHHHHHH
Confidence 7776665544 4557776541000000000000 011122344555555555555555
Q ss_pred HHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCc--hhHHHHHHHHHHHHHH
Q 011308 294 STLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRR--VLLLGSFLGMAIAMGV 367 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~ 367 (489)
.+++.- +.+.+..+...+.. ..+++... ..+...+.+++|+++.+++.||+|.| +++..+.....+..+.
T Consensus 290 ~~l~~d----g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~ 365 (477)
T PF11700_consen 290 YFLYSD----GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLY 365 (477)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 554443 33334333333333 56776665 55666788999999999999999988 6766665544322222
Q ss_pred HHH--HhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 368 QAI--AATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ 445 (489)
Q Consensus 368 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~ 445 (489)
-.+ .... ....+.+...+..++.+...+ +..+...++.+|+.|+++.+..+|++.......+.+||.+.|.+.+.
T Consensus 366 g~~G~~~~~--~g~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~ 442 (477)
T PF11700_consen 366 GLFGFWPSF--FGLKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA 442 (477)
T ss_pred HHHHhhhcc--cCcccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111 111222333333444444443 44567788999999999999999999999999999999999999999
Q ss_pred hc-cchhhHHHHHHHHHHHHHhhh
Q 011308 446 LG-PLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 446 ~g-~~~~~~~~~~~~~~~~~~~~~ 468 (489)
.| .+..+....++.+++.++++.
T Consensus 443 tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 443 TGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred hCCchhHHHHHHHHHHHHHHHHhh
Confidence 88 677788888888887776653
No 109
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.86 E-value=3.2e-20 Score=180.41 Aligned_cols=347 Identities=14% Similarity=0.071 Sum_probs=212.1
Q ss_pred ccccccccch-hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc----ccCc-hhHhhhhhHHHHHHHHHHhh
Q 011308 64 GYHLGVVNET-LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD----GIGR-RRAFQLCALPMIIGASMSAI 137 (489)
Q Consensus 64 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~i~~~~~~~ 137 (489)
.+....+.+. ...+.+.+|++.... |.+..+..+.-++..|+.|.++| |+|| |+.++.+.+..+++..+.-.
T Consensus 19 ~~~~~~~~~~l~~yyt~v~Gls~~~v--g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~ 96 (473)
T PRK10429 19 DFAIGIVYMYLMYYYTDVVGLSVGLV--GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFS 96 (473)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHc
Confidence 3333344443 345566679988777 99999999999999999999999 6699 56666787777777655543
Q ss_pred hh------hHHHHHHHHHHHhhcccchhhhHHHHHHhcC-CccchhhHHHHHHHHHHHHHHHHHHhhcccc-------cc
Q 011308 138 TK------NLWGMLLGRLFVGTGMGIGPAVAALYVSEVS-PAYVRGAYGSSTQIAACLGILVALFVGLPAK-------EI 203 (489)
Q Consensus 138 ~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-------~~ 203 (489)
.+ .+..+++.-++.+++.....+...++..|.. ++++|.+..++...+.++|..+.+.+...+. +.
T Consensus 97 ~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~ 176 (473)
T PRK10429 97 AHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRG 176 (473)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 22 1334555566777777777888889999998 5889999988877766766555544433221 12
Q ss_pred cchHHHHHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhh
Q 011308 204 LGWWRICFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELI 282 (489)
Q Consensus 204 ~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (489)
.+ |+....+.++..++..+..++ .+|.++. .+. ..+++++.+....++.++
T Consensus 177 ~g-~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~-----------------------~~~~~~~~~~~~~~~~~~ 228 (473)
T PRK10429 177 FG-FQMFTLVLIAFFIVSTIITLRNVHEVYSS----DNQ-----------------------VSAEGSHLTLKDIVALIY 228 (473)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHcCceecCCc----ccc-----------------------ccccccCCCHHHHHHHHh
Confidence 23 777777766666654444333 5654310 000 000011112233455566
Q ss_pred ccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHH
Q 011308 283 SPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFL 359 (489)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 359 (489)
+++.++..+...++...... ....+.+++.+....+... ......+..+++.++.+++.||+|+|+.+..+..
T Consensus 229 ~n~~~~~ll~~~~~~~~~~~----~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~ 304 (473)
T PRK10429 229 KNDQLSCLLGMALAYNIASN----IINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI 304 (473)
T ss_pred cCHHHHHHHHHHHHHHHHHH----HHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77776655555444443222 2222222222222112222 3334457778888999999999999999887777
Q ss_pred HHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHH
Q 011308 360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVIN 432 (489)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~ 432 (489)
+..++.+.+.+.... ...+.+..++...+.+.+.+.. .+...++++|..+ .+..|..+|...++..++.
T Consensus 305 ~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~g~~~~~~-~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~ 380 (473)
T PRK10429 305 FPVLSCGVLLLMGLA---APHNALLIVIAGILLNIGTALF-WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGS 380 (473)
T ss_pred HHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHH
Confidence 655554444322111 1122233333334444444332 2445557777744 4456779999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 011308 433 FFVGLLFLRLLEQLGP 448 (489)
Q Consensus 433 ~~~~~~~g~l~~~~g~ 448 (489)
.+++.+.|.+.+..|+
T Consensus 381 al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 381 AFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999988776
No 110
>PRK09848 glucuronide transporter; Provisional
Probab=99.85 E-value=1.5e-19 Score=175.01 Aligned_cols=330 Identities=13% Similarity=0.110 Sum_probs=195.2
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc----CchhHh-hhhhHHHHHHHHHH-hh----hhh--H
Q 011308 74 LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI----GRRRAF-QLCALPMIIGASMS-AI----TKN--L 141 (489)
Q Consensus 74 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~l-~~~~~~~~i~~~~~-~~----~~~--~ 141 (489)
.+.+.+.+|++..+. |.+.+...+..++..++.|+++||. ||||.. ..+.+...+..++. .. +++ .
T Consensus 32 ~~y~~~~~gl~~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (448)
T PRK09848 32 LSYYTDVAGVGAAAA--GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKV 109 (448)
T ss_pred HHHHHHHcCCCHHHH--HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHH
Confidence 346667779887777 9999999999999999999999996 777754 55555444444432 21 111 2
Q ss_pred HHHHHHHHHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHH-----HHHHHHHHHHhhcccccccc-hHHHHHHHh
Q 011308 142 WGMLLGRLFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIA-----ACLGILVALFVGLPAKEILG-WWRICFWVA 214 (489)
Q Consensus 142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~G~~i~~~~~~~l~~~~~-~Wr~~f~~~ 214 (489)
..+++.-++.+++.+...+...++..+..+ +++|.+..+.-..+ ..++..++|.++........ .|.....+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~ 189 (448)
T PRK09848 110 VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVL 189 (448)
T ss_pred HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 233445567777777777777777777664 46788876665543 33555566666554322111 021111222
Q ss_pred HHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308 215 TIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG 293 (489)
Q Consensus 215 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (489)
++..++..+. ....+|+++ + +.++......++++++++.++...+.
T Consensus 190 ~v~~~~~~~~~~~~~~e~~~----~-----------------------------~~~~~~~~~~~~~l~~n~~f~~~~~~ 236 (448)
T PRK09848 190 AIAGMVLYFICFKSTRENVV----R-----------------------------IVAQPSLKISLQTLKRNRPLFMLCIG 236 (448)
T ss_pred HHHHHHHHHHHHcCcEeccC----C-----------------------------CccCCCHHHHHHHHhCCchHHHHHHH
Confidence 3333322222 223455421 0 00011223346778888888766655
Q ss_pred HHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc--h-hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHH
Q 011308 294 STLFALQQLSGINAVFYFSSTVFKNAGVPSDS--G-NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAI 370 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 370 (489)
.++............++|..+. .+.+... . .....++.+++.++.+++.||+++|+.+..+.++..++.+.+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~ 313 (448)
T PRK09848 237 ALCVLISTFAVSASSLFYVRYV---LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW 313 (448)
T ss_pred HHHHHHHHHHHhhhheeeEeee---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 5555443322222223332222 2222222 1 12223556778889999999999999999888877777665543
Q ss_pred HhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 371 AATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR-------IRAKAMAVCMAVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (489)
.. ..+.+..+....+.+.+.+... +...++..|..|.+ .+|...|+.++...+|..+++.+.+.+.
T Consensus 314 ~~------~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l 386 (448)
T PRK09848 314 VS------VWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL 386 (448)
T ss_pred cC------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1222333333444444444333 34455666766533 4699999999999999999999999998
Q ss_pred HHhcc
Q 011308 444 EQLGP 448 (489)
Q Consensus 444 ~~~g~ 448 (489)
+..|+
T Consensus 387 ~~~G~ 391 (448)
T PRK09848 387 GLSGY 391 (448)
T ss_pred HHcCC
Confidence 87765
No 111
>PRK11462 putative transporter; Provisional
Probab=99.83 E-value=1.6e-18 Score=167.21 Aligned_cols=332 Identities=14% Similarity=0.072 Sum_probs=205.2
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc----cCchhHh-hhhhHHHHHHHHHHhhhhh------HH
Q 011308 74 LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG----IGRRRAF-QLCALPMIIGASMSAITKN------LW 142 (489)
Q Consensus 74 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~l-~~~~~~~~i~~~~~~~~~~------~~ 142 (489)
...+.+..|+++... |.+..+.-+--++.-|+.|.++|| +||||.. +++.+..+++.+++-..++ ..
T Consensus 33 ~~fyt~~~Gl~~~~~--g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~ 110 (460)
T PRK11462 33 MFFYTDIFGIPAGFV--GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI 110 (460)
T ss_pred HHHHHHhhCCCHHHH--HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence 445667789887777 899999999999999999999995 7986554 5666777777666544332 33
Q ss_pred HHHHHHHHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHHHHHHHHHHHHhhcccccccc------hHHHHHHHhH
Q 011308 143 GMLLGRLFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIAACLGILVALFVGLPAKEILG------WWRICFWVAT 215 (489)
Q Consensus 143 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~------~Wr~~f~~~~ 215 (489)
.+.+.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+.+..+ .|+....+.+
T Consensus 111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ 190 (460)
T PRK11462 111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS 190 (460)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 45555666677777777778888999887 7899999999999999888777666544333221 2777777767
Q ss_pred HHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhH
Q 011308 216 IPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGS 294 (489)
Q Consensus 216 ~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (489)
++.+++.+..++ .+|.++. ++++......++..++++.++.+....
T Consensus 191 ii~~i~~~i~~~~~kE~~~~---------------------------------~~~~~~~~~~l~~~~~Nk~~~~l~~~~ 237 (460)
T PRK11462 191 VVAFMMLAFCFFTTKERVEA---------------------------------PPTTTSMREDLRDIWQNDQWRIVGLLT 237 (460)
T ss_pred HHHHHHHHHHHhcceeccCC---------------------------------CccCCCHHHHHHHHhCChHHHHHHHHH
Confidence 666555444333 4443210 000111233456677787776555444
Q ss_pred HHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhc
Q 011308 295 TLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATS 374 (489)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (489)
++.............+|..+..+... ..........+..+++.++++++.||+++|+....+.....+..+++.+..
T Consensus 238 ~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~-- 314 (460)
T PRK11462 238 IFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP-- 314 (460)
T ss_pred HHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--
Confidence 44433333333334444444332211 111244456677888999999999999998887655443333222222221
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308 375 FVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 447 (489)
..+....+...++.+.+.+ ...+..+++..|..+ .+..|...+...+...+|..+++.+.|.+.+..|
T Consensus 315 ----~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 315 ----MQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred ----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1111112222233333322 223344556666544 3445666788889999999999999999998766
Q ss_pred c
Q 011308 448 P 448 (489)
Q Consensus 448 ~ 448 (489)
+
T Consensus 390 y 390 (460)
T PRK11462 390 Y 390 (460)
T ss_pred C
Confidence 5
No 112
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.83 E-value=4.3e-19 Score=161.68 Aligned_cols=274 Identities=17% Similarity=0.085 Sum_probs=180.5
Q ss_pred hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc------------
Q 011308 137 ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL------------ 204 (489)
Q Consensus 137 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~------------ 204 (489)
...+|+.++++-++.|.|.+...+..+.++.+..+++++++.+++.+..+++|..++|.+++.+....
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999777321
Q ss_pred ---chHHHHHHHhHHHHHHHHHHhhc--ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHH
Q 011308 205 ---GWWRICFWVATIPAAFLALFMEF--CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFS 279 (489)
Q Consensus 205 ---~~Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (489)
.+||++|++.+...++..+.+.+ +||..+ ++.++. .+ ++. ...+
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~--------------------~~---~~~---~~~~ 134 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV--------------------SS---GDT---TQKT 134 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc--------------------cc---ccc---cchh
Confidence 23999999776665555444433 344311 000000 00 000 0112
Q ss_pred hhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh---cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchh
Q 011308 280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN---AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVL 353 (489)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~ 353 (489)
+.++++.++...+..+++... ......|.+.++.+ .+.+... .......+..+|+++++++.||+++|+.
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~----e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~ 210 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGA----EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY 210 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 244455555444444444433 33444455555543 3555433 5556677888999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHH
Q 011308 354 LLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINF 433 (489)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~ 433 (489)
+..+..+..++.++...... ........+.+++.+. ..|...+...+..|+ +.+++.++. ....+|+.
T Consensus 211 l~~~~~l~~~~~~l~~~~~~---------~~~~~~~~l~g~~~s~-i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~ 278 (310)
T TIGR01272 211 LAFNAFLAVLLSIGAALTHG---------YVAMWFVLALGLFNSI-MFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGA 278 (310)
T ss_pred HHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcch
Confidence 87777666665533332211 1122233344444433 345555566676674 467777775 67789999
Q ss_pred HHHHHHHHHHHHhccchhhHHHHH
Q 011308 434 FVGLLFLRLLEQLGPLILYTIFGS 457 (489)
Q Consensus 434 ~~~~~~g~l~~~~g~~~~~~~~~~ 457 (489)
+.|.+.|.+.|..|.+..+++...
T Consensus 279 i~P~l~G~lad~~g~~~a~~v~~~ 302 (310)
T TIGR01272 279 IVPLLQGSLADCLGIQLAFALPVP 302 (310)
T ss_pred HHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999999998777764433
No 113
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.6e-18 Score=160.28 Aligned_cols=337 Identities=18% Similarity=0.161 Sum_probs=235.7
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc----cCch-hHhhhhhHHHHHHHHHHhhhhh------HH
Q 011308 74 LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG----IGRR-RAFQLCALPMIIGASMSAITKN------LW 142 (489)
Q Consensus 74 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~------~~ 142 (489)
+-.+.+.+|++.... |.+..+.-+--++.-|+.|.+.|| +||+ +.++.+.+-.++.+.++-.+++ ..
T Consensus 36 l~fYTdv~Gis~~~a--G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ 113 (467)
T COG2211 36 LFFYTDVFGLSAALA--GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLI 113 (467)
T ss_pred HHHHhcccCCcHHHH--HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchH
Confidence 345667789888777 888888888889999999999995 7874 5566777888888888776663 44
Q ss_pred HHHHHHHHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHHHHHHHHHHHHhhccccc-------ccchHHHHHHHh
Q 011308 143 GMLLGRLFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIAACLGILVALFVGLPAKE-------ILGWWRICFWVA 214 (489)
Q Consensus 143 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~-------~~~~Wr~~f~~~ 214 (489)
..++.-.+.+++.......-.++..++.+ ++||.+..+.-+.+..+|..+...+...+.. ..| |+..-.+.
T Consensus 114 ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g-~~~~~~~~ 192 (467)
T COG2211 114 YALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG-YQGTALVL 192 (467)
T ss_pred HHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh-HHHHHHHH
Confidence 45566788888888888888888888875 6889999999999998886665554443332 224 78777777
Q ss_pred HHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308 215 TIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG 293 (489)
Q Consensus 215 ~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (489)
++++++..+..++ .+|.+. +++ ..++..+.+....+..+++|+.+....+.
T Consensus 193 ~vi~~i~~l~~~~~v~ER~~---~~~-------------------------~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~ 244 (467)
T COG2211 193 GVIGVILLLFCFFNVKERVV---ETQ-------------------------PTKTGVKLKLKDSFLLIFKNRPLLLLLLM 244 (467)
T ss_pred HHHHHHHHHHHHHHhhcccC---ccc-------------------------cCcccccccHHHHHHHHHccchHHHHHHH
Confidence 7777766665554 555432 000 00001122233445567888888877765
Q ss_pred HHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308 294 STLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAAT 373 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (489)
..+.............+|..+.+++..............+.+++.++..++.+|+|+|++...+.++..++.+++.+..
T Consensus 245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~- 323 (467)
T COG2211 245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP- 323 (467)
T ss_pred HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-
Confidence 5555554444444555555555444433333355555666677789999999999999999999999998888887765
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011308 374 SFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL 446 (489)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 446 (489)
.++....++..++.+.+.+ ...++.+++++|... .+..|...|...++..+|.+++..+.|++.+..
T Consensus 324 -----~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~ 397 (467)
T COG2211 324 -----AGSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI 397 (467)
T ss_pred -----CcchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2233334444444444444 345677888887743 455689999999999999999999999999887
Q ss_pred cc
Q 011308 447 GP 448 (489)
Q Consensus 447 g~ 448 (489)
||
T Consensus 398 Gy 399 (467)
T COG2211 398 GY 399 (467)
T ss_pred CC
Confidence 74
No 114
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.81 E-value=2.3e-17 Score=151.16 Aligned_cols=409 Identities=15% Similarity=0.105 Sum_probs=253.3
Q ss_pred HHHHHHHhhhhccccccccch-hhhhhhccc----ccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhH
Q 011308 53 VLVAIISSFLFGYHLGVVNET-LESISLDLG----FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCAL 126 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~----~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~ 126 (489)
+..++..-+...++.+-+... .-.+..+++ .++++. .-+.+.|..-.-+...++|+++|| +|+|+.+..|.+
T Consensus 23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai 100 (498)
T COG3104 23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI 100 (498)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 445555566666655544333 334444444 777766 566777777677889999999999 599999999999
Q ss_pred HHHHHHHHHhhhh--hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCcc--chhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308 127 PMIIGASMSAITK--NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAY--VRGAYGSSTQIAACLGILVALFVGLPAKE 202 (489)
Q Consensus 127 ~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 202 (489)
+..+|.++.+.+. +...++++-++.++|.|..-+....++.|.+|++ +|-..++++.++.++|..++|++.+++.+
T Consensus 101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~ 180 (498)
T COG3104 101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI 180 (498)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence 9999999999884 7889999999999999999999999999999854 47788999999999999999999999999
Q ss_pred ccchHHHHHHHhHHHHHHHHHHhhcccCC---------hhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhh------
Q 011308 203 ILGWWRICFWVATIPAAFLALFMEFCAES---------PHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKS------ 267 (489)
Q Consensus 203 ~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 267 (489)
..+ |...|.+.++-..+.++..+..+.. +..+..+................. .......+..
T Consensus 181 ~~g-~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 257 (498)
T COG3104 181 NYG-WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL--LTLLLNQNTFSGVLLV 257 (498)
T ss_pred hhC-HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 999 9999999887766665554443321 111101111000000000000000 0000000000
Q ss_pred ----------hhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc--C--CCCCchhHHHHHH
Q 011308 268 ----------ERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA--G--VPSDSGNICVGIA 333 (489)
Q Consensus 268 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~ 333 (489)
.+....++.. .+--|-.....+++...+++..+....+.+..|.....+.. | +++.....+..+.
T Consensus 258 ~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~ 336 (498)
T COG3104 258 ISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFF 336 (498)
T ss_pred HHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHH
Confidence 0000000000 00000011222333344444444444555555555544432 1 3344466666777
Q ss_pred HHHHHHHHHHHHhhhCCc-------hhHHHHHHHHHHHHHHHHHHhhcccC-C-CcchhHHHHHHHHHHHHHhcCCCcch
Q 011308 334 NLSGSIIAMILMDKLGRR-------VLLLGSFLGMAIAMGVQAIAATSFVS-S-SGALSLSLGGMLLFVLTFSLGAGPVP 404 (489)
Q Consensus 334 ~~~~~~~~g~l~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (489)
-++.+++..++..|.+++ .-...+..++..+++++......... . ..+.++.+. ..++....-++..|+.
T Consensus 337 Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil-~y~l~s~gEL~iSpvG 415 (498)
T COG3104 337 IILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVL-SYVLQSFGELFISPVG 415 (498)
T ss_pred HHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHH-HHHHHHHHHHHhCHHH
Confidence 778887777777774432 12345556666666666555222221 2 234444444 3444444456777888
Q ss_pred hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308 405 SLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR------LLEQLGPLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 405 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
..++..+.|+...+..+++.......+..++..+.+. ..+.......|...+.+.++.....+.
T Consensus 416 Ls~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~ 485 (498)
T COG3104 416 LSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL 485 (498)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999888888888887763 334445556677777776666655543
No 115
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=161.24 Aligned_cols=394 Identities=16% Similarity=0.195 Sum_probs=230.8
Q ss_pred CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCc-hhHhhhh
Q 011308 46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGR-RRAFQLC 124 (489)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~ 124 (489)
.+..|+.+.+..+.+++.....+++.+..-.+.++++.+.+....|++.++..++.++++++.|++..|.+. |+.++.+
T Consensus 29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s 108 (488)
T KOG2325|consen 29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS 108 (488)
T ss_pred cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence 355677888888889999999888888776677775555454455999999999999999999999999997 8889999
Q ss_pred hHHHHHHHHHH-hh---hh-hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcc
Q 011308 125 ALPMIIGASMS-AI---TK-NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLP 199 (489)
Q Consensus 125 ~~~~~i~~~~~-~~---~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~ 199 (489)
.++..+++++. ++ .+ .-+.++++|++.|+|.|. .....+++++....++|.++++....+..+|..+||.++..
T Consensus 109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence 99999999988 33 23 677889999999999654 56889999998888999999999988888888888877655
Q ss_pred ccccc--c----------hHHHHHHHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhh
Q 011308 200 AKEIL--G----------WWRICFWVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSK 266 (489)
Q Consensus 200 l~~~~--~----------~Wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (489)
+.... | .+..+=|+.+++.++.++... +++|.++....++.+++ ++.+.
T Consensus 188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~------------------~~~~~ 249 (488)
T KOG2325|consen 188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV------------------EEEKS 249 (488)
T ss_pred HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc------------------hhhcc
Confidence 43211 0 034555667777666655543 46776542111111000 00000
Q ss_pred hhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc----hhHHHHHHHHHHHHH--
Q 011308 267 SERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS----GNICVGIANLSGSII-- 340 (489)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-- 340 (489)
+.+..+ ..+..+...+++........+.....-....+......+..... ......+.+++...+
T Consensus 250 ~~~~~~---------~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l 320 (488)
T KOG2325|consen 250 DIEKVK---------KPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLL 320 (488)
T ss_pred chhhhc---------cCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHH
Confidence 000000 00112222222222222222222221222222222333333332 222333333333222
Q ss_pred -HHHHH-hhhCCchhHHHHHHHHHHHHHHHHHHhhcccCC-----------------------CcchhHHHHH-HHHHHH
Q 011308 341 -AMILM-DKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSS-----------------------SGALSLSLGG-MLLFVL 394 (489)
Q Consensus 341 -~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~-~~~~~~ 394 (489)
..... .++.+|..+..+.........+..........+ ..+.+..+.. .++++.
T Consensus 321 ~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~ 400 (488)
T KOG2325|consen 321 LYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGI 400 (488)
T ss_pred HHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheecc
Confidence 22221 233445555555333333322221111110000 0001111111 111111
Q ss_pred HHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308 395 TFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
++-. ......+.-+|...+++++++.|++......+..++|.+........|++..+.+.++..++...+...
T Consensus 401 ~~P~-~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~ 473 (488)
T KOG2325|consen 401 AFPF-ISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIV 473 (488)
T ss_pred cccc-ccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 1111 112234466788888999999999999999999999999999999999988877776666655544433
No 116
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.76 E-value=3e-16 Score=140.67 Aligned_cols=346 Identities=15% Similarity=0.102 Sum_probs=225.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhh-hHHHHHHHHHHhhhhh--H-HHHHHHHHHHhhcccchhhhHH
Q 011308 88 MAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLC-ALPMIIGASMSAITKN--L-WGMLLGRLFVGTGMGIGPAVAA 163 (489)
Q Consensus 88 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~-~~~~~i~~~~~~~~~~--~-~~l~~~r~l~G~~~~~~~~~~~ 163 (489)
...|...++..+..++.+++.|.++|+.|+||..... ..+..++..+..++++ + +..++.-.+..++.....+...
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd 137 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD 137 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence 3357788888899999999999999999987666544 4455555555555544 4 4445567888888888888999
Q ss_pred HHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhh---cccc---------------cccchHHHHHHHhHHHHHHHHHH-
Q 011308 164 LYVSEVSPAYVRGAYGSSTQIAACLGILVALFVG---LPAK---------------EILGWWRICFWVATIPAAFLALF- 224 (489)
Q Consensus 164 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~---~~l~---------------~~~~~Wr~~f~~~~~~~~~~~~~- 224 (489)
+++.+..++++-++..++-.....+|.++.-++. .... +... =|..+.+.++-.++..+-
T Consensus 138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFALPM 216 (438)
T ss_pred hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHHhHH
Confidence 9999999998888777766665566655544432 0011 1222 577777777766665543
Q ss_pred hhcccCChhHHHhcCCh-HHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhc
Q 011308 225 MEFCAESPHWLFKRGRG-AEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLS 303 (489)
Q Consensus 225 ~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (489)
++..+|.++ .+.+. +..+ ..-++-..+++++.++++....+++.+++.-
T Consensus 217 ~~~v~~~~~---~~~~~~~~l~-----------------------~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~D---- 266 (438)
T COG2270 217 ILNVHDAEK---ISSPPPTALR-----------------------NGFKELKSTFKEIRGRKNLVLFLIARFFYID---- 266 (438)
T ss_pred Hhccccccc---ccccchHHHH-----------------------HHHHHHHHHHHHHhcccchHHHHHHHHHHHh----
Confidence 344555442 00000 0000 1112234457777777777766666655544
Q ss_pred chhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308 304 GINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS 379 (489)
Q Consensus 304 ~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
+.+.+..+...+-. +.|.+... ......+..++|+++.|++.||++.|+++..+.++..+..+...+....
T Consensus 267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~----- 341 (438)
T COG2270 267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGE----- 341 (438)
T ss_pred hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcccc-----
Confidence 34444444444433 57777666 4556678889999999999999999998888877776665554443221
Q ss_pred cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHH
Q 011308 380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSF 458 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~ 458 (489)
........+.+...+ +.....-.+..+++|+++.++.+|+++..+...+..||...+.+.+.+| .+..+....++
T Consensus 342 ---~~f~i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl 417 (438)
T COG2270 342 ---LDFWILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL 417 (438)
T ss_pred ---HHHHHHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 112222233333333 3455677899999999999999999999999999999999999998877 44455555555
Q ss_pred HHHHHHHhhhcccCCC
Q 011308 459 CFLAVIYVKRNVMETK 474 (489)
Q Consensus 459 ~~~~~~~~~~~~~~~~ 474 (489)
..++.+++. ..|+.+
T Consensus 418 l~iGl~~L~-~v~~~~ 432 (438)
T COG2270 418 LLIGLLLLL-RVKVPG 432 (438)
T ss_pred HHhhHhhEE-eecCCC
Confidence 555555444 344443
No 117
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.74 E-value=3.4e-16 Score=151.23 Aligned_cols=304 Identities=17% Similarity=0.199 Sum_probs=215.1
Q ss_pred hHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHH
Q 011308 51 PHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMII 130 (489)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i 130 (489)
..+.++++..+..++..+.+...+..+.+.|+++.++. |++.+.+-++..+...+..+..-|.-|-+.+-.|++++++
T Consensus 97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL 174 (735)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence 34556667777778877888889999999999999887 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhh--------------------h-----------------------------h--HH-HHHHHHHHHhhcccch
Q 011308 131 GASMSAIT--------------------K-----------------------------N--LW-GMLLGRLFVGTGMGIG 158 (489)
Q Consensus 131 ~~~~~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~~~~ 158 (489)
+++++++- + + ++ .++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 99998761 0 0 22 4666899999999999
Q ss_pred hhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc------------------hHHHHHHHhHHHHHH
Q 011308 159 PAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG------------------WWRICFWVATIPAAF 220 (489)
Q Consensus 159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~------------------~Wr~~f~~~~~~~~~ 220 (489)
++...+|+-|...+++-+..+|+......+|.++|.++++++...+. -|..-|++.+.+.++
T Consensus 255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~ 334 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF 334 (735)
T ss_pred ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988764321 188888888888888
Q ss_pred HHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhh
Q 011308 221 LALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ 300 (489)
Q Consensus 221 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (489)
..+.++++|...+ +..++.++++ .... .......++.....+.-++-+...+++++++.+....++..+-.
T Consensus 335 ~a~p~f~fPk~lp---~~~~~~~~~~-~~~~---k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~-- 405 (735)
T KOG3626|consen 335 SAVPLFFFPKELP---KSQKRKRARD-LHVL---KTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIES-- 405 (735)
T ss_pred HHHHHHhCcccCc---cccccchhhh-hccc---ccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHH--
Confidence 8888888876543 1111111100 0000 00000000000000111234456777888887665555444433
Q ss_pred hhcchhHHHHhHHHHHHh-cCCCCCchhHHHHH----HHHHHHHHHHHHHhhhC--CchhHHHHHHHHHHHHHH
Q 011308 301 QLSGINAVFYFSSTVFKN-AGVPSDSGNICVGI----ANLSGSIIAMILMDKLG--RRVLLLGSFLGMAIAMGV 367 (489)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~ 367 (489)
..+..+..|+|.+++. .+.+++....+.+. +..+|.+++|++.+|+. .|....+..+...+.++.
T Consensus 406 --~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 406 --LAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred --HHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 3567777788888765 67777765555543 44578889999999986 344544444444444333
No 118
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.73 E-value=4.3e-17 Score=159.39 Aligned_cols=182 Identities=14% Similarity=0.045 Sum_probs=138.4
Q ss_pred ccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH---HhhhhhHHHHH
Q 011308 70 VNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM---SAITKNLWGML 145 (489)
Q Consensus 70 ~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~---~~~~~~~~~l~ 145 (489)
....+|.+. +++|.+..+. ++..+...++..++.++.|+++||+|||+++..+.++..++.+. ...+++...++
T Consensus 269 ~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (490)
T PRK10642 269 LLTYMPSYLSHNLHYSEDHG--VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIF 346 (490)
T ss_pred HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 344566654 5678776655 67778888999999999999999999999988887654443322 22345677788
Q ss_pred HHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHh
Q 011308 146 LGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFM 225 (489)
Q Consensus 146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~ 225 (489)
++|++.|++.+........++.|.+|++.|+.++++......++..++|.+.+++.+..++|+.++++..++.++..+..
T Consensus 347 ~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~ 426 (490)
T PRK10642 347 AGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG 426 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 89999998877777777888899999999999999744444555678888888877655447888777777777776667
Q ss_pred hcccCChhHHHhc-----CChHHHHHHHHHHhC
Q 011308 226 EFCAESPHWLFKR-----GRGAEAEAELERLFG 253 (489)
Q Consensus 226 ~~~~e~~~~~~~~-----~~~~~~~~~~~~~~~ 253 (489)
+++||+|+|+.++ +|.+|+++.+.++++
T Consensus 427 ~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~ 459 (490)
T PRK10642 427 VTMKETANRPLKGATPAASDIQEAKEILVEHYD 459 (490)
T ss_pred HHhccccCCCCCCccccccchhhHHHHhhcccc
Confidence 7789999987755 788899988888764
No 119
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.71 E-value=1.1e-18 Score=168.80 Aligned_cols=382 Identities=16% Similarity=0.177 Sum_probs=3.0
Q ss_pred HHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308 54 LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 133 (489)
+.+++..+...+..+.....++.+.+.|+++.++. |++.+.+-++..+..++..++.+|..|-|.+-.|.++++++++
T Consensus 6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~ 83 (539)
T PF03137_consen 6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL 83 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence 34455556666777778888999999999999988 9999999999999999999999998888999999999999999
Q ss_pred HHhhhh--------------------------------------------------hHHHHHHHHHHHhhcccchhhhHH
Q 011308 134 MSAITK--------------------------------------------------NLWGMLLGRLFVGTGMGIGPAVAA 163 (489)
Q Consensus 134 ~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~ 163 (489)
++++-+ -+..++++.++.|+|....++...
T Consensus 84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~ 163 (539)
T PF03137_consen 84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI 163 (539)
T ss_dssp --------------------------------------------------------------------SSS---------
T ss_pred HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence 876400 134577889999999999999999
Q ss_pred HHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc---------------------chHHHHHHHhHHHHHHHH
Q 011308 164 LYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL---------------------GWWRICFWVATIPAAFLA 222 (489)
Q Consensus 164 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~---------------------~~Wr~~f~~~~~~~~~~~ 222 (489)
+|+-|..++++-+..+|+..+...+|.++|.++++.+.+.+ |.|-.-|++.++..++..
T Consensus 164 tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a 243 (539)
T PF03137_consen 164 TYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA 243 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876432 116666777777766666
Q ss_pred HHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhh---hhhccchhhhhHHhhhccccccchhhhHHHHHh
Q 011308 223 LFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSK---SERGDEADAVKFSELISPRNFGVVFIGSTLFAL 299 (489)
Q Consensus 223 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (489)
+.++++|+.-+... ++.++.+....+ .+........+.++ ..+..++-....+++++|+.+....++......
T Consensus 244 ipl~~FPk~lp~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~ 319 (539)
T PF03137_consen 244 IPLFFFPKKLPGTS--ERQEEKESSERK--EEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF 319 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHcCCccCCCcc--cccchhhhhhcc--hhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 66666665422110 000000000000 00000000000000 011223344566778888877766665555444
Q ss_pred hhhcchhHHHHhHHHHHHh-cCCCCCchhHHHH----HHHHHHHHHHHHHHhhhC--CchhHHHHHHHHHHHHHH---HH
Q 011308 300 QQLSGINAVFYFSSTVFKN-AGVPSDSGNICVG----IANLSGSIIAMILMDKLG--RRVLLLGSFLGMAIAMGV---QA 369 (489)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~---~~ 369 (489)
....+..|.|.+++. .+.++.....+.+ .+..+|.+++|++.+|++ .|..+....+...+..++ ..
T Consensus 320 ----~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~ 395 (539)
T PF03137_consen 320 ----IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLF 395 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666654 4555554333333 356688999999999985 344444444333333222 11
Q ss_pred HH--hh--------cc------cC-------------------------CC--cchhHHHHHHHHHHHHHhcCCCcchhh
Q 011308 370 IA--AT--------SF------VS-------------------------SS--GALSLSLGGMLLFVLTFSLGAGPVPSL 406 (489)
Q Consensus 370 ~~--~~--------~~------~~-------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (489)
+. .+ .+ .. .+ ......++...+..+..+....|...
T Consensus 396 ~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~- 474 (539)
T PF03137_consen 396 FLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTL- 474 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhe-
Confidence 00 00 00 00 00 01111222222222223333444444
Q ss_pred hhcccCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 011308 407 LLSEIFPNRIRAKAMAVCMAVHW-VINFFVGLLFLRLLEQL 446 (489)
Q Consensus 407 ~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~ 446 (489)
..-..+|+++|+.+.|+...+.. +|.+-+|.++|.+.|..
T Consensus 475 i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 475 ITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -----------------------------------------
T ss_pred eeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 45577899999999999998766 56788999999999864
No 120
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.69 E-value=4.4e-14 Score=127.39 Aligned_cols=345 Identities=17% Similarity=0.131 Sum_probs=223.2
Q ss_pred hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccC-----chhHhh-hhhHHHHHHHHHHhhh-----h------
Q 011308 77 ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIG-----RRRAFQ-LCALPMIIGASMSAIT-----K------ 139 (489)
Q Consensus 77 i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~-~~~~~~~i~~~~~~~~-----~------ 139 (489)
+..|++++..-. +.+.+...+.. ...+.+|+.+|+.+ ||..++ .|.++...+..+..++ .
T Consensus 6 MIvEL~vpA~lv--~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~ 82 (403)
T PF03209_consen 6 MIVELGVPAWLV--ALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS 82 (403)
T ss_pred HHHHhccHHHHH--HHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 556778765555 66666666554 46889999999999 776654 4566666555554432 2
Q ss_pred -hH--H--HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHh
Q 011308 140 -NL--W--GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVA 214 (489)
Q Consensus 140 -~~--~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~ 214 (489)
+. + ...+.-.+.|+|.+...+...+++.|..|+++|+++.++......+|.+++..+.+.+.+.++.-|..-.+.
T Consensus 83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~ 162 (403)
T PF03209_consen 83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ 162 (403)
T ss_pred cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence 11 2 233456788999999999999999999999999999999999999999999999998887765434433333
Q ss_pred HHHHHH--HHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308 215 TIPAAF--LALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI 292 (489)
Q Consensus 215 ~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
....+. ..++..+-.|.+. .+.. ...++++......++++..+++.++.+.
T Consensus 163 ~~a~i~~~l~~ia~wg~E~r~-----~~~~----------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~ 215 (403)
T PF03209_consen 163 GVALIALLLNLIALWGQEPRR-----SRRA----------------------AAAERPRPPFREAWRQVWASPQARRFFV 215 (403)
T ss_pred HHHHHHHHHHHHHHHhcccCC-----cccc----------------------cCCCCCCccHHHHHHHHHhCCChhHHHH
Confidence 332222 2222222222211 0000 0112233344556777888888776655
Q ss_pred hHHHHHhhhhcchhHHHHhHHHHH------HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHh-hhCCchhHHHHHHHHH
Q 011308 293 GSTLFALQQLSGINAVFYFSSTVF------KNAGVPSDS---GNICVGIANLSGSIIAMILMD-KLGRRVLLLGSFLGMA 362 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~ 362 (489)
..++..+ .++.++.. +-.|++.+. .+...+.+.++|....+++.. |.++++....++....
T Consensus 216 fl~l~t~---------a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~ 286 (403)
T PF03209_consen 216 FLFLGTL---------AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGA 286 (403)
T ss_pred HHHHHHH---------HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 5444433 23333322 225666555 666777888899888888876 5777788778888877
Q ss_pred HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL 442 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 442 (489)
+++.++.+.... .+.+.......+++++.+........ .+-++.++++.|..+|.-...+.+...++..+.|.+
T Consensus 287 ~~f~lii~a~~~-----~~~~~~~~~~~l~G~g~G~f~vgals-~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 287 LAFALIILAGPL-----GSPWLFRPGVFLLGLGNGLFTVGALS-LMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHHHHHHHHHhc-----ccchHHHHHHHHHHHhhhHHHHHHHH-HHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666555332 23444555566666665554433333 455677778899999999999999999999999998
Q ss_pred HHHh----------ccchhhHHHHHHHHHHHHHh
Q 011308 443 LEQL----------GPLILYTIFGSFCFLAVIYV 466 (489)
Q Consensus 443 ~~~~----------g~~~~~~~~~~~~~~~~~~~ 466 (489)
.|.. +|..+|.+=++..+++..+.
T Consensus 361 ~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 361 RDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 8742 24445555555555555444
No 121
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.63 E-value=1.5e-15 Score=122.19 Aligned_cols=136 Identities=22% Similarity=0.366 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCcc
Q 011308 94 VSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAY 173 (489)
Q Consensus 94 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 173 (489)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++....++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 44567788899999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc-ccC
Q 011308 174 VRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF-CAE 230 (489)
Q Consensus 174 ~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~~e 230 (489)
+|++..++.+....+|..+++.+++.+.+..+ |++.|++.++..++..+...+ .||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999998888 999999888777666555444 444
No 122
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.61 E-value=3.6e-14 Score=134.04 Aligned_cols=355 Identities=16% Similarity=0.196 Sum_probs=220.8
Q ss_pred HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHH----HHHHHHHHHHHHHhhcccCchhHhhhhhHH
Q 011308 52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTC----LGGAFVGSMFSGWIADGIGRRRAFQLCALP 127 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~----~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 127 (489)
......+-.+..++......+..+.....++.+....+ +...... .+...+.++..|.++||+|||..+....+.
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~ 101 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLEN-GLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG 101 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchh-hhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence 34444555555566555555666666665554433332 4444444 577788999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhcc--cchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 128 MIIGASMSAITKNLWGMLLGRLFVGTGM--GIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~--~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
..+..+...+.. +|.++ +.|+.. +.......++++|....++|....++.+..+..+..++|.+++.+.+..+
T Consensus 102 ~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~ 176 (463)
T KOG2816|consen 102 TILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG 176 (463)
T ss_pred HHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 888888777765 44433 444433 34566778899999999999999999999999999999999999998887
Q ss_pred hHHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhc-
Q 011308 206 WWRICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELIS- 283 (489)
Q Consensus 206 ~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 283 (489)
.-..|.+..+..++..+. ..++||+.. ++.+.+. . .. +..............++...+
T Consensus 177 -~a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~~~~-~--~~-------------~~~~~~~~~~~~~~~~~~~~~~ 236 (463)
T KOG2816|consen 177 -IALVFLIAAASGILSLLYMLLFLPESLQ---EKERSDA-T--LR-------------ELTPGSLDSSHVADAFQSLTKV 236 (463)
T ss_pred -chHHHHHHHHHHHHHHHHHhhccccccC---ccccccc-c--cc-------------ccCCCcccchhhhhhhhhhccc
Confidence 678888888777776665 445888743 1111100 0 00 000000000011111111112
Q ss_pred --cccccchhhhHHHHHhhhhcchh-HHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHH-HHHhhhCCchhHHH
Q 011308 284 --PRNFGVVFIGSTLFALQQLSGIN-AVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAM-ILMDKLGRRVLLLG 356 (489)
Q Consensus 284 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~ 356 (489)
+|....+.....+.......... ...+|+. ...+++... .....+....++.++.. .+...++.|+....
T Consensus 237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~---~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l 313 (463)
T KOG2816|consen 237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLK---AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL 313 (463)
T ss_pred CCCccchHHHHHHHHHHHHHhcCceeEEEEEEe---eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence 12222111111111111111111 1111111 113444443 44455566667776665 67777898888888
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Q 011308 357 SFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVG 436 (489)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~ 436 (489)
|.....+.....++....+ ..+....+ ..+.....|...+..+...+++.+|++.++...+..+...++|
T Consensus 314 Gl~~~~~~~~~~af~~~~w--------~~~~~~v~--~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~ 383 (463)
T KOG2816|consen 314 GLLSEFLQLLLFAFATETW--------MMFAAGVV--VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSP 383 (463)
T ss_pred HHHHHHHHHHHHHHhccch--------hhhHHHHH--HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhH
Confidence 9888888888888775543 12222222 2223344566677788888889999999999999999999999
Q ss_pred HHHHHHHHH
Q 011308 437 LLFLRLLEQ 445 (489)
Q Consensus 437 ~~~g~l~~~ 445 (489)
.+.+.+...
T Consensus 384 ~~~~~i~~~ 392 (463)
T KOG2816|consen 384 ALYGNIFAL 392 (463)
T ss_pred HHHHHHHHH
Confidence 999988654
No 123
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.58 E-value=6.3e-15 Score=140.81 Aligned_cols=160 Identities=12% Similarity=0.117 Sum_probs=129.3
Q ss_pred chhhhhhhcccccccc------hHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh----hH
Q 011308 72 ETLESISLDLGFSGST------MAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK----NL 141 (489)
Q Consensus 72 ~~~~~i~~~~~~~~~~------~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~ 141 (489)
...+.+.++.+.++.. ...+...++..++..++.++.|+++||+|||+++..+.++.+++..+..... ++
T Consensus 229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~ 308 (418)
T TIGR00889 229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY 308 (418)
T ss_pred HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 4445556666644311 2238889999999999999999999999999999999999988876666532 34
Q ss_pred HHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHH-HHHHHHHHHHHHhhccccccc------chHHHHHHHh
Q 011308 142 WGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQ-IAACLGILVALFVGLPAKEIL------GWWRICFWVA 214 (489)
Q Consensus 142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~------~~Wr~~f~~~ 214 (489)
+.+++.+++.|++.+...+....++.|++|+++|+++.++.+ ...++|..+||.++|.+.+.. + |+..|.+.
T Consensus 309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~-~~~~f~~~ 387 (418)
T TIGR00889 309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD-WQTMWLFF 387 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc-hHHHHHHH
Confidence 667788999999999888888999999999999999999997 678899999999999998874 4 99999988
Q ss_pred HHHHHHHHHHh-hcccCCh
Q 011308 215 TIPAAFLALFM-EFCAESP 232 (489)
Q Consensus 215 ~~~~~~~~~~~-~~~~e~~ 232 (489)
++..++..++. ++++|+.
T Consensus 388 ~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 388 AGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHHHHHhCCcc
Confidence 88777766554 4467653
No 124
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.56 E-value=7.1e-14 Score=133.03 Aligned_cols=155 Identities=16% Similarity=0.207 Sum_probs=126.5
Q ss_pred chhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308 72 ETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF 150 (489)
Q Consensus 72 ~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 150 (489)
...|. +.+++|.+..+. |++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++
T Consensus 237 ~~~p~~l~~~~~~~~~~~--g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 314 (393)
T PRK15011 237 INMPLFIINELHLPEKLA--GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL 314 (393)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34554 456788877666 888888777888899999999999999998887776666655555567788888889999
Q ss_pred HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccC
Q 011308 151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAE 230 (489)
Q Consensus 151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e 230 (489)
.+++.+...+....+..|.+|+ +|+++.++++....+|..+++.+++.+.+..+ |+..|++.+++.++..+..++.||
T Consensus 315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888777777777888999875 58999999999999999999999999999888 999999888888777776666654
No 125
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.56 E-value=4.8e-14 Score=141.02 Aligned_cols=139 Identities=13% Similarity=0.003 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCC
Q 011308 92 LVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSP 171 (489)
Q Consensus 92 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~ 171 (489)
+...+..++..++.++.|+++||+|||++++++.++++++.++.++.++...+++.+++.|++.++.++...++++|++|
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P 678 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP 678 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44556678889999999999999999999999999999999999999888888888999999888889999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCCh
Q 011308 172 AYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESP 232 (489)
Q Consensus 172 ~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~ 232 (489)
.++|++++|+.++...+|.+++|.+++.+.+.. ...+|++.++..++..++..++||+.
T Consensus 679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999877643 46788888877777777777788864
No 126
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.56 E-value=1.3e-14 Score=139.60 Aligned_cols=148 Identities=12% Similarity=0.041 Sum_probs=125.2
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhh
Q 011308 82 GFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAV 161 (489)
Q Consensus 82 ~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 161 (489)
+.+..+. |++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus 258 ~~~~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~ 335 (420)
T PRK09528 258 EQGTRVF--GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG 335 (420)
T ss_pred CcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 4443444 89999999999999999999999999999999999999999899999999999999999999998888788
Q ss_pred HHHHHHhcCCccchhhHHHH-HHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhh-cccCCh
Q 011308 162 AALYVSEVSPAYVRGAYGSS-TQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFME-FCAESP 232 (489)
Q Consensus 162 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~-~~~e~~ 232 (489)
...++.|.+|++.|+...+. ++....+|.++++.+.|++.+..| ||..|.+.++..++..+..+ .+++++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88999999999988877655 677788999999999999999888 99999988877766554433 344443
No 127
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.55 E-value=6.4e-14 Score=133.47 Aligned_cols=356 Identities=15% Similarity=0.107 Sum_probs=198.9
Q ss_pred cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-----CchhHhhhhhHHHHHHHHHHhhh----hhH
Q 011308 71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-----GRRRAFQLCALPMIIGASMSAIT----KNL 141 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~l~~~~~~~~i~~~~~~~~----~~~ 141 (489)
.+..|.+.+++|+++++. ....+...+...+ .++.|.++|-+ -||+-++++.++..++.+..+.. .+.
T Consensus 10 ~~~~~~l~~~l~ls~~~~--~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQL--QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 345678889999998887 5666666666554 67789999976 35666667777765555555442 356
Q ss_pred HHHHHHHHHHhhcccchhhhHHHHHHhcCC--ccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHH
Q 011308 142 WGMLLGRLFVGTGMGIGPAVAALYVSEVSP--AYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAA 219 (489)
Q Consensus 142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~ 219 (489)
....++-++..+|.+....++-+++.|... +++|+...+.......+|.+++..++|.+.+..+ +|..|.+.+++..
T Consensus 87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~ 165 (433)
T PF03092_consen 87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPL 165 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHH
Confidence 667777788889999999999999999874 3347788888888899999999999999999888 8999988877766
Q ss_pred HHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh-hHHHHH
Q 011308 220 FLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI-GSTLFA 298 (489)
Q Consensus 220 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 298 (489)
+..+..+++.|+.+ +.+.++... ..+ ++........++.....++.++.+..+...+ ..++..
T Consensus 166 l~~~~~~~~~~e~~----~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 229 (433)
T PF03092_consen 166 LMLIVALFLLEERK----VRPADEVFS-FGK-----------EEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFN 229 (433)
T ss_pred HHHHHHHHhhhhcc----ccccchhhc-ccc-----------cccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 66555444433211 000000000 000 0000000001223344555666665554433 222211
Q ss_pred hhhhcchhHHHHhHHHHHHhcCCCCCchhHHH---HHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcc
Q 011308 299 LQQLSGINAVFYFSSTVFKNAGVPSDSGNICV---GIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSF 375 (489)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (489)
...........++.....+..+++........ .++.++|..+......+..-|+++....+...+..+.-......+
T Consensus 230 ~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~ 309 (433)
T PF03092_consen 230 LPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRW 309 (433)
T ss_pred hccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEE
Confidence 11111101011111111111113333222222 233334444443333333444554444443332222111111110
Q ss_pred c--CCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308 376 V--SSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 376 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 447 (489)
. ......+..+.--.+......+...|... +.+|+.|+...|+.+++..++.++|..++..+...+.+..+
T Consensus 310 n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lv-l~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 310 NLDLGIPDQWFALGDTILEEVIGMIAFMPSLV-LAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred eeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHH-HHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0 00011122222333333333334445544 68899999999999999999999999999999998887766
No 128
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.55 E-value=9.9e-14 Score=132.64 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=130.5
Q ss_pred cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308 71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF 150 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 150 (489)
...+|.+.++.|. ++. ++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++
T Consensus 236 ~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (399)
T PRK05122 236 ATFITLYYAARGW--DGA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL 311 (399)
T ss_pred HHHHHHHHHHccc--ccc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3344555555555 233 567788889999999999999999999999999998888888888888888888889999
Q ss_pred HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccC
Q 011308 151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAE 230 (489)
Q Consensus 151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e 230 (489)
.|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..+ |++.|++.++..++..+..+++++
T Consensus 312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998888888888899999999999999999999999999999999998888 999999988877776666555444
No 129
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.54 E-value=3.1e-14 Score=135.08 Aligned_cols=147 Identities=18% Similarity=0.076 Sum_probs=125.3
Q ss_pred chhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhH--HHHHHHHH
Q 011308 72 ETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNL--WGMLLGRL 149 (489)
Q Consensus 72 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~ 149 (489)
...+.+.++++.+.++. +++.+.+.++..++.++.|++.||+|||+.+..+.++..++.++..+.++. ..+++..+
T Consensus 226 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T TIGR00890 226 GLYKPYGQSLGLSDGFL--VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA 303 (377)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 34555667888776555 899999999999999999999999999999999999988888877776643 33445678
Q ss_pred HHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHH
Q 011308 150 FVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFL 221 (489)
Q Consensus 150 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~ 221 (489)
+.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |++.|++.++..++.
T Consensus 304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHh
Confidence 88888888888888899999999999999999999999999999999999999888 999999887766654
No 130
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.52 E-value=7.3e-14 Score=133.92 Aligned_cols=156 Identities=21% Similarity=0.132 Sum_probs=130.7
Q ss_pred cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308 71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF 150 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 150 (489)
....|.+.++.|.+..+. +++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+..++
T Consensus 240 ~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK11551 240 LNWLPSLLVGQGLSRSQA--GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA 317 (406)
T ss_pred HHHHHHHHHhCCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 334677778888887777 899999999999999999999999999999988877777777777777788888888888
Q ss_pred HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcc
Q 011308 151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFC 228 (489)
Q Consensus 151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~ 228 (489)
.|++.+...+...+++.|.+|+++|++..++.+....+|..++|.+++.+.+..++|...++......++..+..+++
T Consensus 318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888888999999999999999999999999999999999999998876547777777666655555544443
No 131
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.51 E-value=1.6e-13 Score=128.94 Aligned_cols=164 Identities=23% Similarity=0.329 Sum_probs=143.8
Q ss_pred hhhccccccccchhhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchh-HhhhhhHHHHHHHHHHhhh
Q 011308 61 FLFGYHLGVVNETLESISLDL-GFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRR-AFQLCALPMIIGASMSAIT 138 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~i~~~~~~~~ 138 (489)
+.............|.+.++. |.+..+. ++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 262 (352)
T cd06174 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA 262 (352)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 334444445555667666664 7666666 99999999999999999999999999999 9999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHH
Q 011308 139 KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPA 218 (489)
Q Consensus 139 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~ 218 (489)
++.+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |++.|++.++..
T Consensus 263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~ 341 (352)
T cd06174 263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALA 341 (352)
T ss_pred ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998888 999999999888
Q ss_pred HHHHHHhhc
Q 011308 219 AFLALFMEF 227 (489)
Q Consensus 219 ~~~~~~~~~ 227 (489)
++..+..++
T Consensus 342 ~i~~i~~~~ 350 (352)
T cd06174 342 LLAALLLLL 350 (352)
T ss_pred HHHHHHhee
Confidence 877665543
No 132
>PRK12382 putative transporter; Provisional
Probab=99.51 E-value=2.5e-13 Score=129.51 Aligned_cols=151 Identities=16% Similarity=0.204 Sum_probs=128.9
Q ss_pred cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308 71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF 150 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 150 (489)
....|.+.++.+.+ +. ++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+.+++++
T Consensus 236 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (392)
T PRK12382 236 GTFVSLYFASKGWA--MA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL 311 (392)
T ss_pred HHHHHHHHHhcCCc--hh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 33445555565654 23 566777888889999999999999999999999999999988888888888888889999
Q ss_pred HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhh
Q 011308 151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFME 226 (489)
Q Consensus 151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~ 226 (489)
.|++.+...+.....+.|.+|+++|+++.++++....+|..++|.+.+.+.+..| |++.|.+.++..++..+..+
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence 9999988888888889999999999999999999999999999999999999988 99999998887776655543
No 133
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.50 E-value=4e-13 Score=127.39 Aligned_cols=156 Identities=13% Similarity=0.010 Sum_probs=134.1
Q ss_pred ccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHH
Q 011308 64 GYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWG 143 (489)
Q Consensus 64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~ 143 (489)
......+....|.+.+|+|.+.++. |++.+...++..++.++.+++.||+|+|+.+.++.+...+..++.+++++.+.
T Consensus 218 ~~~~~~~~~~~~~~l~~~g~s~~~~--g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~ 295 (382)
T TIGR00902 218 QGAHAAYYGFSAIYWQAAGISASAT--GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPL 295 (382)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHH
Confidence 3334444556676777888887777 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHH-HHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHH
Q 011308 144 MLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQ-IAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLA 222 (489)
Q Consensus 144 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~ 222 (489)
+++.+++.|++.+...+....++.+. |+++|++..++++ ...++|.++++.++|.+.+..+ + ..|++.++..++..
T Consensus 296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~ 372 (382)
T TIGR00902 296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAF 372 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHH
Confidence 99999999999999999999999998 9999999999986 4678999999999999999988 5 55666666666554
Q ss_pred HH
Q 011308 223 LF 224 (489)
Q Consensus 223 ~~ 224 (489)
++
T Consensus 373 ~~ 374 (382)
T TIGR00902 373 FL 374 (382)
T ss_pred HH
Confidence 43
No 134
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.49 E-value=3.9e-13 Score=127.52 Aligned_cols=150 Identities=22% Similarity=0.347 Sum_probs=125.5
Q ss_pred hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhccc
Q 011308 77 ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMG 156 (489)
Q Consensus 77 i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~ 156 (489)
+.+++|.++.+. |++.+.......++.++.|++.||+|||+++..+.++..+..++..+.++.+.+.+.+++.|++.+
T Consensus 226 ~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 303 (375)
T TIGR00899 226 IIHELGLPDKLA--GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG 303 (375)
T ss_pred HHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778877666 888877777778888999999999999999988877776666666667788888889999999988
Q ss_pred chhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccC
Q 011308 157 IGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAE 230 (489)
Q Consensus 157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e 230 (489)
...+....++.|..|+ +++++.++++....+|..++|.+++.+.+..+ |+..|++.++..++..+...+++|
T Consensus 304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 304 ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheecC
Confidence 8888888899998875 56799999999999999999999999999888 999999988887777666655543
No 135
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.48 E-value=4e-13 Score=130.05 Aligned_cols=161 Identities=12% Similarity=0.051 Sum_probs=128.5
Q ss_pred hhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc--CchhHhhh--hhHHHHHHHHHHh
Q 011308 61 FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI--GRRRAFQL--CALPMIIGASMSA 136 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~--~~~~~~i~~~~~~ 136 (489)
++...........+|.+.+++|.+..+. +++.+...++..+++++.|+++||. ++|+...+ +.++.+++.++..
T Consensus 251 ~l~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~ 328 (455)
T TIGR00892 251 VIMFLGFFAPIIFLVPYAKDKGVDEYEA--AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA 328 (455)
T ss_pred HHHHHHccchHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344456677778888877666 9999999999999999999999984 34443333 3444455556667
Q ss_pred hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHH
Q 011308 137 ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATI 216 (489)
Q Consensus 137 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~ 216 (489)
..++++.+++.+++.|++.+...+...+++.|.+|++++++.+++++....+|..+||.+++.+.+..++|++.|++.++
T Consensus 329 ~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~ 408 (455)
T TIGR00892 329 LAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGS 408 (455)
T ss_pred HhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhH
Confidence 78889999999999999999999999999999999999999999999999999999999999999877449999999887
Q ss_pred HHHHHHH
Q 011308 217 PAAFLAL 223 (489)
Q Consensus 217 ~~~~~~~ 223 (489)
..++..+
T Consensus 409 ~~li~~~ 415 (455)
T TIGR00892 409 IVVSAGL 415 (455)
T ss_pred HHHHHHH
Confidence 7665544
No 136
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.46 E-value=2.7e-13 Score=130.18 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=130.1
Q ss_pred ccchhhhhhhcccccccc--hHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 011308 70 VNETLESISLDLGFSGST--MAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLG 147 (489)
Q Consensus 70 ~~~~~~~i~~~~~~~~~~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~ 147 (489)
..+.++.+.++.+.+.++ ...+.+.+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (408)
T PRK09874 238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL 317 (408)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 444555555554332222 123666777788888999999999999999999999988888888877878888888899
Q ss_pred HHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc
Q 011308 148 RLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF 227 (489)
Q Consensus 148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~ 227 (489)
+++.|++.+...+....++.+..|+++|++.+++++....+|..+||.+++.+.+..+ |++.|++.++..++..+..++
T Consensus 318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888 999999988887776665433
No 137
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.45 E-value=5.6e-12 Score=112.08 Aligned_cols=244 Identities=16% Similarity=0.095 Sum_probs=151.5
Q ss_pred cccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 011308 69 VVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGR 148 (489)
Q Consensus 69 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 148 (489)
..+|..-.+-+++|.++.++ +.+....+...++..++.|.++||+|||+.-+..+++.+++++. -.+++++.++++|
T Consensus 52 LQGpY~Y~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GR 128 (354)
T PF05631_consen 52 LQGPYLYALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGR 128 (354)
T ss_pred hhcchhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHH
Confidence 34555445557899988888 89999999999999999999999999999999999999998864 4568899999999
Q ss_pred HHHhhcccchhhhHHHHH-HhcCC----ccchhhHHHHHH-HHHHHHHHHHHHhhcccccccch-HHHHHHHhHHHHHHH
Q 011308 149 LFVGTGMGIGPAVAALYV-SEVSP----AYVRGAYGSSTQ-IAACLGILVALFVGLPAKEILGW-WRICFWVATIPAAFL 221 (489)
Q Consensus 149 ~l~G~~~~~~~~~~~~~i-~~~~~----~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~~~-Wr~~f~~~~~~~~~~ 221 (489)
++.|++.+..+.+-.++. .|.-. ++..+.-++... ..+++-.+++.+++-++.+..+. -..+|....+...+.
T Consensus 129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~ 208 (354)
T PF05631_consen 129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA 208 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999988887764 55422 222222222222 22233344455555555554431 267788777766666
Q ss_pred HHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhh
Q 011308 222 ALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ 300 (489)
Q Consensus 222 ~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (489)
.++... .+|.... ..+. .+..+.....++.+.++++.+.+-.. ..+.
T Consensus 209 ~~~I~~~W~ENyg~---~~~~--------------------------~~~~~~~~~a~~~i~~d~ril~LG~~---qslF 256 (354)
T PF05631_consen 209 AVLILKTWPENYGD---TSSS--------------------------SSLSGSFREAWRAILSDPRILLLGLI---QSLF 256 (354)
T ss_pred HHHHHhcccccCCC---cccc--------------------------cchHHHHHHHHHHHHcCchhHHHHHH---HHHH
Confidence 555433 4554320 0000 00011122344556666665544333 3333
Q ss_pred hhcchhHHHHhHHHHHHh-cCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308 301 QLSGINAVFYFSSTVFKN-AGVPSDSGNICVGIANLSGSIIAMILMDK 347 (489)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 347 (489)
....+.....|.|.+-.+ .+.+.+.+...+.++.++|+.+..++..+
T Consensus 257 E~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~ 304 (354)
T PF05631_consen 257 EGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK 304 (354)
T ss_pred HHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333444445555554422 23445557777778888888887665543
No 138
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.43 E-value=1.4e-12 Score=123.69 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=122.6
Q ss_pred chhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 011308 72 ETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFV 151 (489)
Q Consensus 72 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 151 (489)
..+|.+.++.|.+.++. |++.+.+.++..+++++.|++.||+|+|+++..+..+..++.+... . .......+++.
T Consensus 221 ~~lp~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~ 295 (381)
T PRK03633 221 GLMPLYLNHQGMSDASI--GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL 295 (381)
T ss_pred HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence 34677777778777666 8889999999999999999999999999999988888777665543 2 23344577888
Q ss_pred hhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhh
Q 011308 152 GTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFME 226 (489)
Q Consensus 152 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~ 226 (489)
|++.....|.....+.|..|+++++...+.++...++|..+||.++|++.++.+ |++.|.+.+...++..+..+
T Consensus 296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHH
Confidence 887777889999999999998888888888888899999999999999999988 89999998877766655443
No 139
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.43 E-value=1.5e-12 Score=124.49 Aligned_cols=168 Identities=19% Similarity=0.153 Sum_probs=118.4
Q ss_pred HHHHHhhhhccccccccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchh--Hhh------hhh
Q 011308 55 VAIISSFLFGYHLGVVNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRR--AFQ------LCA 125 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~l~------~~~ 125 (489)
...+..++............|.+. +++|.+..+. +++.+...++..++.++.|+++||+|||+ ... .+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T TIGR00893 219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA--GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG 296 (399)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 334444444444445555666554 5577776666 89999999999999999999999999996 111 111
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 126 LPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
++..+........++.+.......+.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g 375 (399)
T TIGR00893 297 LVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG 375 (399)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence 1112222222223344444444455555544 788899999999999999999999999999999999999999998776
Q ss_pred hHHHHHHHhHHHHHHHHHHh
Q 011308 206 WWRICFWVATIPAAFLALFM 225 (489)
Q Consensus 206 ~Wr~~f~~~~~~~~~~~~~~ 225 (489)
.|+..|++.++..++..+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 376 SFAGALMVVAALALIGALSY 395 (399)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 58999988877766655443
No 140
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.42 E-value=4.5e-11 Score=109.47 Aligned_cols=370 Identities=11% Similarity=0.065 Sum_probs=219.7
Q ss_pred hHHHHHHHHhhhhccccccccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308 51 PHVLVAIISSFLFGYHLGVVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI 129 (489)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 129 (489)
+....+|+-.|+..+-- .-+...|.+.+. .|++.++.+ .-+.-...-.+....++...+.|..|.|++++++.+...
T Consensus 5 ~~~~llc~~gf~~~frP-sEPfl~~yL~~~~kn~T~~qv~-~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i 82 (412)
T PF01770_consen 5 KITLLLCLFGFFKEFRP-SEPFLTPYLTGPDKNFTEEQVN-NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI 82 (412)
T ss_pred HHHHHHHHHHHHHhcCC-CCccchHHHcCCccCCCHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34445555555543322 223334555554 788887775 456667777788888999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc-hHH
Q 011308 130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG-WWR 208 (489)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~-~Wr 208 (489)
+..++..+.++...+-+..++-|++.+. ..+-.+++-...|+++-.++.+...++.-+|..++.++|-.+....+ ..+
T Consensus 83 ~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~ 161 (412)
T PF01770_consen 83 ITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYF 161 (412)
T ss_pred HHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 9999999999999999999999998665 56778899888999999999999999999999999999887776332 156
Q ss_pred HHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHH--hCCCCchHHH-HHHhhhhhccchh-------hhhH
Q 011308 209 ICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERL--FGGLHVKYSM-AELSKSERGDEAD-------AVKF 278 (489)
Q Consensus 209 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~ 278 (489)
...++......+..+..+++|..++-..-+++..+... ..+. ....+..+.. +..++.+..+... ...+
T Consensus 162 ~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 240 (412)
T PF01770_consen 162 QLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDF 240 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHH
Confidence 66666655555555566677776542222221111000 0000 0000000000 0000000111111 1233
Q ss_pred HhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCC---c---hhHHHHHHHHHHHHHHHHHHhhhCCch
Q 011308 279 SELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSD---S---GNICVGIANLSGSIIAMILMDKLGRRV 352 (489)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~g~l~d~~~~~~ 352 (489)
++..+++... ...+++....+++.....|.+.+.++..-+.. . +-....+.+.++.+..|++..+..+..
T Consensus 241 ~~~y~~~~ll----~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~ 316 (412)
T PF01770_consen 241 KSCYSNPRLL----LWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG 316 (412)
T ss_pred HHHhcCchHH----HHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHH
Confidence 3444444433 33344444455677777788877777611111 1 344445566667777788754455443
Q ss_pred hHHHHHHHHH--HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHH
Q 011308 353 LLLGSFLGMA--IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWV 430 (489)
Q Consensus 353 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 430 (489)
.+..+..... ..++++.. ..+.+......+++...+.+... +...-++.....+.-|..+|+.+++..+
T Consensus 317 ~l~l~~~S~l~a~~L~lm~~--------t~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~ 387 (412)
T PF01770_consen 317 ELALGVFSLLQAGLLFLMSF--------TGNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALV 387 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHH
Confidence 3333333222 22222222 24456667777777777665433 2233344444556678888877777665
Q ss_pred HHHHHHH
Q 011308 431 INFFVGL 437 (489)
Q Consensus 431 g~~~~~~ 437 (489)
-..+...
T Consensus 388 LQtilT~ 394 (412)
T PF01770_consen 388 LQTILTL 394 (412)
T ss_pred HHHheEE
Confidence 5544443
No 141
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.42 E-value=2.2e-12 Score=125.63 Aligned_cols=170 Identities=18% Similarity=0.127 Sum_probs=122.6
Q ss_pred HHHHHHhhhhccccccccchhhhh-hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308 54 LVAIISSFLFGYHLGVVNETLESI-SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 132 (489)
..+++..++...........+|.+ .+++|.+..+. ++..+...++..++.+++|+++||+|||+.+.....+..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~ 338 (467)
T PRK09556 261 WLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA--INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF 338 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444444443333345556754 56789887776 888999999999999999999999999988766554444333
Q ss_pred HH--HhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHH-HHHHHHHhhccccc-------
Q 011308 133 SM--SAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACL-GILVALFVGLPAKE------- 202 (489)
Q Consensus 133 ~~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~~~~~l~~------- 202 (489)
.+ ....++...+.+.+++.|++.............|.+|+++|+.+.|+.+....+ |..++|.+.|.+.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~ 418 (467)
T PRK09556 339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP 418 (467)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence 22 223456666778888888654333333346677999999999999999988886 77899999999988
Q ss_pred -----ccchHHHHHHHhHHHHHHHHHHhh
Q 011308 203 -----ILGWWRICFWVATIPAAFLALFME 226 (489)
Q Consensus 203 -----~~~~Wr~~f~~~~~~~~~~~~~~~ 226 (489)
..+ |+..|++.++..++..+..+
T Consensus 419 ~~~~~~~~-~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 419 IFGYTLTG-WAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred cccccccC-hHHHHHHHHHHHHHHHHHHH
Confidence 566 99999988777666655443
No 142
>PRK03699 putative transporter; Provisional
Probab=99.41 E-value=2.4e-12 Score=122.70 Aligned_cols=157 Identities=13% Similarity=0.047 Sum_probs=128.6
Q ss_pred cccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 011308 69 VVNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLG 147 (489)
Q Consensus 69 ~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~ 147 (489)
.+....|.+. +++|.+..+. +++.+.+.++..++.++.|+++||+|||+++.....+..+...+....++.+.+.+.
T Consensus 223 ~~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (394)
T PRK03699 223 TFISWVPEYAQKKFGMSLEDA--GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYA 300 (394)
T ss_pred HHHHHHHHHHHHHcCCChHHh--hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 3445566665 5678887777 899999999999999999999999999999988888777777777677787777778
Q ss_pred HHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc
Q 011308 148 RLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF 227 (489)
Q Consensus 148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~ 227 (489)
.++.|++.+...+....+..|..| +++++..+.......+|..++|.+.+.+.+..| |+..+++.++..++..+....
T Consensus 301 ~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 301 ILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHH
Confidence 889999888888888888888775 446777888888889999999999999999888 899999888877776655544
Q ss_pred cc
Q 011308 228 CA 229 (489)
Q Consensus 228 ~~ 229 (489)
++
T Consensus 379 ~~ 380 (394)
T PRK03699 379 LG 380 (394)
T ss_pred HH
Confidence 43
No 143
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.41 E-value=1.2e-12 Score=129.11 Aligned_cols=148 Identities=20% Similarity=0.139 Sum_probs=115.3
Q ss_pred ccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh--hhHHHHHH
Q 011308 70 VNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT--KNLWGMLL 146 (489)
Q Consensus 70 ~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~ 146 (489)
....+|.+. +++|.+..+. +++.+.+.++..++.++.|+++||+|||+++..+.++..+..++.... .+.+.+.+
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTV--ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL 371 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345567776 5888887777 999999999999999999999999999999988877766665544332 34444445
Q ss_pred HHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHH
Q 011308 147 GRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAF 220 (489)
Q Consensus 147 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~ 220 (489)
..++.+.......+....++.|.+|+++|++.+++.+....+|..+||.+++.+.+..+ |+..+...+....+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~~~ 444 (496)
T PRK03893 372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSLTF 444 (496)
T ss_pred HHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHH
Confidence 55555444334456677889999999999999999999999999999999999999988 88887665544333
No 144
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.41 E-value=6.3e-12 Score=119.56 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=123.7
Q ss_pred cccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh-hHHHHHHH
Q 011308 69 VVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK-NLWGMLLG 147 (489)
Q Consensus 69 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~ 147 (489)
.....+|.+.+++|.+..+. |...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+ .
T Consensus 223 ~~~~~lp~~l~~~g~s~~~a--g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~ 298 (393)
T PRK09705 223 SLIAWLPAFYIEIGASAQYS--GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--W 298 (393)
T ss_pred HHHHHHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--H
Confidence 34445666667788887777 8999999999999999999999999999999988888777766554322 22222 2
Q ss_pred HHHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH-h
Q 011308 148 RLFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF-M 225 (489)
Q Consensus 148 r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~-~ 225 (489)
-++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..|+|+..|++.++..++..+. .
T Consensus 299 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (393)
T PRK09705 299 AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITL 378 (393)
T ss_pred HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 345688888888877777777775 57899999999999999999999999999998876888888877766665554 3
Q ss_pred hcccCCh
Q 011308 226 EFCAESP 232 (489)
Q Consensus 226 ~~~~e~~ 232 (489)
.+.||++
T Consensus 379 ~~~~~~~ 385 (393)
T PRK09705 379 RFAPARF 385 (393)
T ss_pred Hhccccc
Confidence 4456654
No 145
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.40 E-value=7.2e-13 Score=126.55 Aligned_cols=156 Identities=19% Similarity=0.143 Sum_probs=118.1
Q ss_pred hhhccccccccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH--HHHhh
Q 011308 61 FLFGYHLGVVNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA--SMSAI 137 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~--~~~~~ 137 (489)
+.............|.+. +++|.+.++. +++.+...++..++.++.|+++||+|||+.+..+..+..+.. +...+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 306 (394)
T TIGR00883 229 IATTTTFYLITTYLPTYLTQTLGLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL 306 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445566665 6778877666 888999999999999999999999999998876555444333 22222
Q ss_pred --hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHH-HHHHHHHHHHHHHHhhcccccccchHHHHHHHh
Q 011308 138 --TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSS-TQIAACLGILVALFVGLPAKEILGWWRICFWVA 214 (489)
Q Consensus 138 --~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~ 214 (489)
.++.+.+.+..++.|++.+...+...+++.|.+|+++|+++.++ ++.+..+|..++|.+++.+.+..+.|++.++..
T Consensus 307 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~ 386 (394)
T TIGR00883 307 LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL 386 (394)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence 24667777788899998888889999999999999999999987 456677899999999999998877577777665
Q ss_pred HHHH
Q 011308 215 TIPA 218 (489)
Q Consensus 215 ~~~~ 218 (489)
.+..
T Consensus 387 ~~~~ 390 (394)
T TIGR00883 387 AALA 390 (394)
T ss_pred HHHH
Confidence 5443
No 146
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.2e-11 Score=112.74 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=141.4
Q ss_pred hhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH
Q 011308 291 FIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGV 367 (489)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 367 (489)
++...+..+..........-.+|.+-++.+.+... ..+.++.+..++.++...+.||+.||++++....++.++.++
T Consensus 15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l 94 (394)
T COG2814 15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL 94 (394)
T ss_pred HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 33444444444445566667788999999988766 667778899999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308 368 QAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 447 (489)
..+.+++ ...++.-++.+...+.. .++..+...+++|+++|++++++......+...+|.+++.++-|.+|
T Consensus 95 ~alAp~f--------~~Ll~aR~~~g~a~G~f-~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G 165 (394)
T COG2814 95 SALAPSF--------AVLLLARALAGLAHGVF-WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHhccH--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 8887654 33455555555555433 34667789999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHhhhccc
Q 011308 448 PLILYTIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
|+..|...++++++..+..+...|
T Consensus 166 WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 166 WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999998888888
No 147
>PRK10054 putative transporter; Provisional
Probab=99.39 E-value=5.6e-12 Score=119.89 Aligned_cols=158 Identities=11% Similarity=0.041 Sum_probs=111.0
Q ss_pred hhHHHHhHHHHH-HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308 305 INAVFYFSSTVF-KNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG 380 (489)
Q Consensus 305 ~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
......+++.++ ++.|.+... ......+..+++.+..|+++||+|||+.+..+.+...++.+.+.+..+.
T Consensus 23 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~------ 96 (395)
T PRK10054 23 RGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNV------ 96 (395)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHH------
Confidence 333344444444 456777666 3344456778889999999999999999988888777777666554332
Q ss_pred chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 011308 381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCF 460 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 460 (489)
+..+....+.+...+ ...+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .+|+..|.+.+++++
T Consensus 97 --~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~ 172 (395)
T PRK10054 97 --TLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSA 172 (395)
T ss_pred --HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHH
Confidence 222222333333322 2345566678899999999999999999999999999999998875 689999998887777
Q ss_pred HHHHHhhhcccC
Q 011308 461 LAVIYVKRNVME 472 (489)
Q Consensus 461 ~~~~~~~~~~~~ 472 (489)
+..++..+..++
T Consensus 173 i~~i~~~~~~~~ 184 (395)
T PRK10054 173 FPLVFIQIWVQR 184 (395)
T ss_pred HHHHHHHHHHhc
Confidence 765555444443
No 148
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.39 E-value=3.6e-12 Score=121.77 Aligned_cols=157 Identities=17% Similarity=0.084 Sum_probs=120.4
Q ss_pred cccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhh-hhhHHHHHHHHHHhh-----hhh
Q 011308 67 LGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQ-LCALPMIIGASMSAI-----TKN 140 (489)
Q Consensus 67 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~~-----~~~ 140 (489)
........|.+.+++|.+..+. +++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+.... .++
T Consensus 238 ~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 315 (402)
T TIGR00897 238 LFGFAVFLPMFVAELGFSTSEW--LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS 315 (402)
T ss_pred HHHHHHHHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 3334556777888888887776 88889999999999999999999999988764 333333333333222 245
Q ss_pred HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHH
Q 011308 141 LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAF 220 (489)
Q Consensus 141 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~ 220 (489)
.+.+.++.++.|++.+...+ ....+.|.. +++|+++.++.+....+|..++|.+++.+.+..| |+..|++.++..++
T Consensus 316 ~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i 392 (402)
T TIGR00897 316 FAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVV 392 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHH
Confidence 67777888889988776644 345667765 5689999999999999999999999999999988 89999998888777
Q ss_pred HHHHhhcc
Q 011308 221 LALFMEFC 228 (489)
Q Consensus 221 ~~~~~~~~ 228 (489)
..+...|+
T Consensus 393 ~~~~~~~~ 400 (402)
T TIGR00897 393 SAFLTAFI 400 (402)
T ss_pred HHHHHHHh
Confidence 66665543
No 149
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.39 E-value=5.2e-12 Score=121.42 Aligned_cols=159 Identities=11% Similarity=0.100 Sum_probs=133.8
Q ss_pred cchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Q 011308 71 NETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRL 149 (489)
Q Consensus 71 ~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 149 (489)
....|.+.++ +|.+..+. |++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.+
T Consensus 243 ~~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQI--GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA 320 (417)
T ss_pred HHhhHHHHHhccCCChhHh--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 4456666666 88877766 99999999999999999999999988888888888888888888888888888888999
Q ss_pred HHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH-hhcc
Q 011308 150 FVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF-MEFC 228 (489)
Q Consensus 150 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~ 228 (489)
+.|++.+...+...+++.|..|+++|++++++++....+|..+|+.+.+.+.+..+ ++..+++.++..++..++ ...+
T Consensus 321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T PRK10489 321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVL 399 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhc
Confidence 99998887777888899999999999999999999999999999999999999888 788888777665555444 3445
Q ss_pred cCCh
Q 011308 229 AESP 232 (489)
Q Consensus 229 ~e~~ 232 (489)
+|.+
T Consensus 400 ~~~~ 403 (417)
T PRK10489 400 GELR 403 (417)
T ss_pred cccc
Confidence 6543
No 150
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.38 E-value=2.6e-11 Score=115.97 Aligned_cols=176 Identities=17% Similarity=0.052 Sum_probs=127.5
Q ss_pred hhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHH
Q 011308 290 VFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMG 366 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 366 (489)
..+..++.+.....-.....+..+.+.++.+.+... ......++..++.+..|++.||+|||+.+..+.++..++.+
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 334444444444444455566667666777777666 44555677788999999999999999999999888888877
Q ss_pred HHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011308 367 VQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE-- 444 (489)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-- 444 (489)
+..+..+. +..+..-.+.+.+.+. ..+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+
T Consensus 89 ~~~~~~~~--------~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 159 (412)
T TIGR02332 89 ATMFATGP--------ESLYLLRILVGIAEAG-FLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD 159 (412)
T ss_pred HHHHhcCH--------HHHHHHHHHHHHHHhh-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77664322 2233444444444443 335555678999999999999999999999999999999998875
Q ss_pred ----HhccchhhHHHHHHHHHHHHHhhhcccCCC
Q 011308 445 ----QLGPLILYTIFGSFCFLAVIYVKRNVMETK 474 (489)
Q Consensus 445 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (489)
..||+..|.+.++..++..++.+++.||+.
T Consensus 160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 358999999988887776666666666654
No 151
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.38 E-value=1.7e-12 Score=124.44 Aligned_cols=139 Identities=24% Similarity=0.188 Sum_probs=112.7
Q ss_pred hhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH-HHhhhhhHHHHHHHHHH
Q 011308 73 TLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS-MSAITKNLWGMLLGRLF 150 (489)
Q Consensus 73 ~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~l~~~r~l 150 (489)
.+|. +.+++|.+..+. +++.+.+.++..++.++.|++.||+|||+.+..+.++..+..+ +....++.+.+.+..++
T Consensus 260 ~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (405)
T TIGR00891 260 LLPTYLKADLGLSPHTV--ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF 337 (405)
T ss_pred hhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3444 445678877766 8999999999999999999999999999999888776533322 33345566777777777
Q ss_pred HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308 151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV 213 (489)
Q Consensus 151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~ 213 (489)
.|++.+...+....++.|.+|+++|++++|+.+....+|..++|++++.+.+..|.|+..+..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 787777777888899999999999999999999999999999999999999987756665554
No 152
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.38 E-value=1.2e-11 Score=119.29 Aligned_cols=158 Identities=13% Similarity=0.059 Sum_probs=118.5
Q ss_pred hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308 306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL 382 (489)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
.....+.|.+.++.+.+... ......++..++.++.|++.||+|||+.+..+.++..++.++..+..+.
T Consensus 40 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-------- 111 (434)
T PRK11663 40 KSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSL-------- 111 (434)
T ss_pred hhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHH--------
Confidence 34566678888888887655 4455667888999999999999999999999888888887766654322
Q ss_pred hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 011308 383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLA 462 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 462 (489)
+..+....+.+.+.+.. .+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||+..|.+.++++++.
T Consensus 112 ~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 112 WAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 22333333444444433 34556688899999999999999999999999999999999999999999998888776655
Q ss_pred HHHhhhcccC
Q 011308 463 VIYVKRNVME 472 (489)
Q Consensus 463 ~~~~~~~~~~ 472 (489)
.++..+..+|
T Consensus 191 ~~~~~~~~~~ 200 (434)
T PRK11663 191 GLFLCWRLRD 200 (434)
T ss_pred HHHHHHHcCC
Confidence 5444434443
No 153
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.38 E-value=8.1e-12 Score=118.52 Aligned_cols=149 Identities=16% Similarity=0.089 Sum_probs=123.4
Q ss_pred cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308 71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF 150 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 150 (489)
....|.+.+|.|.+..+. |.+.+...++..+..++.|++.||+|+|+++..+.+..+++.++.+.+++.+.+++..++
T Consensus 225 ~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (382)
T PRK11128 225 YGFSAIYWQAAGYSASTI--GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQIL 302 (382)
T ss_pred HHHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344455667788876666 899998989999999999999999999999999999999988888889999999999999
Q ss_pred HhhcccchhhhHHHHHHhcCCccchhhHHHHHH-HHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308 151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQ-IAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF 224 (489)
Q Consensus 151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~ 224 (489)
.|++.+...+....++.+. +++++++..+..+ ....+|..+||.++|.+.+..+ + ..|+..++..++.++.
T Consensus 303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence 9999998888888988887 5666788888876 5567888999999999999988 5 4666666665554433
No 154
>PRK03545 putative arabinose transporter; Provisional
Probab=99.37 E-value=1.5e-11 Score=117.11 Aligned_cols=149 Identities=12% Similarity=0.082 Sum_probs=119.5
Q ss_pred hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH-HHHhhhhhHHHHHHHHHHHh
Q 011308 74 LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA-SMSAITKNLWGMLLGRLFVG 152 (489)
Q Consensus 74 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~-~~~~~~~~~~~l~~~r~l~G 152 (489)
.|.+.+++|.+.++. +++.+.+.++..+++++.|+++||+|||++.. +..+..++. .+....++.+.+.++.++.|
T Consensus 229 ~~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g 305 (390)
T PRK03545 229 EPFVQQVAGLSENFA--TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWG 305 (390)
T ss_pred HHHHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 344555678877766 89999999999999999999999999887544 444444443 33455677888888999999
Q ss_pred hcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc
Q 011308 153 TGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF 227 (489)
Q Consensus 153 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~ 227 (489)
++.+...+.....+.+..| ++|++++++++....+|..+|+.++|.+.+..+ ++..|++.+++.++..+....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHH
Confidence 9887777777788888876 578999999999999999999999999999999 999999988887776555433
No 155
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.37 E-value=2e-11 Score=116.07 Aligned_cols=155 Identities=14% Similarity=0.137 Sum_probs=117.9
Q ss_pred HhHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHH
Q 011308 310 YFSSTVFKNAGVPSDSG---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSL 386 (489)
Q Consensus 310 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
..+|.+.++.+.+.... .....++..++.++.|++.||+|||+.+..+.++.+++.++..+..+ .+..+
T Consensus 41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~ 112 (394)
T PRK10213 41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS--------FSLLL 112 (394)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh--------HHHHH
Confidence 34667777888877663 34556778889999999999999999999999988887766655422 23344
Q ss_pred HHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Q 011308 387 GGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYV 466 (489)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
..-.+.+.+.+. ..+....++.|.+|+++|+++.++.....+++..++|.+.+.+.+..||+..|.+.++++++..+..
T Consensus 113 ~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~ 191 (394)
T PRK10213 113 IGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWI 191 (394)
T ss_pred HHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 3456666888999999999999999999999999999999999999999999998887777665555
Q ss_pred hhcccCC
Q 011308 467 KRNVMET 473 (489)
Q Consensus 467 ~~~~~~~ 473 (489)
....||+
T Consensus 192 ~~~~p~~ 198 (394)
T PRK10213 192 IKSLPSL 198 (394)
T ss_pred HHHCCCC
Confidence 4445554
No 156
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.37 E-value=5.9e-12 Score=123.65 Aligned_cols=178 Identities=19% Similarity=0.076 Sum_probs=131.2
Q ss_pred HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308 52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG 131 (489)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~ 131 (489)
.+...++..+.............|.+.+++|.+..+. ++......++..++.++.|+++||+|||+.+..+.++.+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 362 (481)
T TIGR00879 285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC 362 (481)
T ss_pred HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 3334444444444444445556788888889887655 88888999999999999999999999999999998888887
Q ss_pred HHHHhh-----hh------hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccc
Q 011308 132 ASMSAI-----TK------NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPA 200 (489)
Q Consensus 132 ~~~~~~-----~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l 200 (489)
.++.++ .+ +...+....++.+.......+....++.|.+|+++|++++++.+....+|.++++.+.+.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~ 442 (481)
T TIGR00879 363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM 442 (481)
T ss_pred HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776652 11 2223333333333322334466677889999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHhHHHHHHHHHHhhc-ccCCh
Q 011308 201 KEILGWWRICFWVATIPAAFLALFMEF-CAESP 232 (489)
Q Consensus 201 ~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~ 232 (489)
.+..+ |++.|++.++.+++..+..++ .||++
T Consensus 443 ~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 443 LESIG-VGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHhcC-ccceehhHHHHHHHHHHHHheecccCC
Confidence 88888 999999888887776665544 56543
No 157
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.36 E-value=2e-11 Score=116.25 Aligned_cols=160 Identities=16% Similarity=0.107 Sum_probs=118.6
Q ss_pred hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308 306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL 382 (489)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
.......|.+.++.+.+... ......++..++.++.|++.||+|||+.+..+.++..++.+...+... .
T Consensus 22 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--------~ 93 (385)
T TIGR00710 22 DMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN--------I 93 (385)
T ss_pred HHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--------H
Confidence 33334456777777877665 445556778899999999999999999999888888777776655432 1
Q ss_pred hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 011308 383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLA 462 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 462 (489)
+.......+.+.+.+. ..+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..+|+..+.+.+++.++.
T Consensus 94 ~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 172 (385)
T TIGR00710 94 ETLLVLRFVQAFGASA-GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL 172 (385)
T ss_pred HHHHHHHHHHHcchhH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 2233333333333332 234556688899999999999999999999999999999999999999999998888887777
Q ss_pred HHHhhhcccCCC
Q 011308 463 VIYVKRNVMETK 474 (489)
Q Consensus 463 ~~~~~~~~~~~~ 474 (489)
.++.++..||++
T Consensus 173 ~~~~~~~~~~~~ 184 (385)
T TIGR00710 173 SALIFFILPETL 184 (385)
T ss_pred HHHHHHhCCCCC
Confidence 766665566554
No 158
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.35 E-value=3.8e-12 Score=114.50 Aligned_cols=175 Identities=11% Similarity=0.045 Sum_probs=138.9
Q ss_pred hhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHH
Q 011308 290 VFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMG 366 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 366 (489)
+++..++.+...+..--.+..-.|.+.++.+++.+. +.+.+.+..-++.++.|.++||.+.|..+..++++.++..+
T Consensus 30 if~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ni 109 (448)
T COG2271 30 IFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNI 109 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHH
Confidence 333444433333333445556667777777787776 55666788889999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 011308 367 VQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLF--LRLLE 444 (489)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~--g~l~~ 444 (489)
++.+..+ .++..+...+-+.+.+.++.|... .+..-+|++.||+..++-|...++|+.+.|.+. +.+.+
T Consensus 110 l~Gfs~s--------~~~~~~l~~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 110 LFGFSPS--------LFLFAVLWVLNGWFQGMGWPPCAR-TITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHhhhhH--------HHHHHHHHHHHHHHhcCCCcHHHH-HHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 9888753 344566667777778888777766 677888999999999999999999999999999 88888
Q ss_pred HhccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308 445 QLGPLILYTIFGSFCFLAVIYVKRNVMET 473 (489)
Q Consensus 445 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (489)
+.+|+..|++-++++++..++.++..+++
T Consensus 181 ~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 181 HGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88999999999999988888777666554
No 159
>TIGR00895 2A0115 benzoate transport.
Probab=99.35 E-value=1.5e-11 Score=117.65 Aligned_cols=161 Identities=22% Similarity=0.177 Sum_probs=118.9
Q ss_pred chhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308 304 GINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG 380 (489)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
.......+.|.+.++.+.+... ......++..++.++.|+++||++||+.+..+.++..++.++..+..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------- 104 (398)
T TIGR00895 32 DLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN------- 104 (398)
T ss_pred HHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc-------
Confidence 3445566677777777777655 444556778899999999999999999998888877777666554321
Q ss_pred chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 011308 381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCF 460 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 460 (489)
.+..++...+.+.+.+ ...+...+++.|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..+.+.+++++
T Consensus 105 -~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 182 (398)
T TIGR00895 105 -VTQLLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPL 182 (398)
T ss_pred -hHHHHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHH
Confidence 2223333444443333 23456667899999999999999999999999999999999999999999988888876666
Q ss_pred HHHHHhhhcccCC
Q 011308 461 LAVIYVKRNVMET 473 (489)
Q Consensus 461 ~~~~~~~~~~~~~ 473 (489)
+..++.....+++
T Consensus 183 ~~~~~~~~~~~~~ 195 (398)
T TIGR00895 183 LLLLLLMRFLPES 195 (398)
T ss_pred HHHHHHHHhCCCC
Confidence 6665555555554
No 160
>PRK09952 shikimate transporter; Provisional
Probab=99.35 E-value=8.5e-12 Score=120.37 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=113.3
Q ss_pred hhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhh---h-hhHHHHHHH
Q 011308 73 TLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI---T-KNLWGMLLG 147 (489)
Q Consensus 73 ~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~-~~~~~l~~~ 147 (489)
..|. +.+++|.+.+.. ..+.....+...++.++.|+++||+|||+++..+.++..++.+.... . ++.+.+++.
T Consensus 272 ~~~~y~~~~~g~s~~~~--~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (438)
T PRK09952 272 FALNYSTQNLGLPRELF--LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFS 349 (438)
T ss_pred HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3443 456677766543 44555556667788899999999999999998887766554433322 1 234444556
Q ss_pred HHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHH-HHHHHHHHHHHHhhccccccc-chHHHHHHHhHHHHHHHHHHh
Q 011308 148 RLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQ-IAACLGILVALFVGLPAKEIL-GWWRICFWVATIPAAFLALFM 225 (489)
Q Consensus 148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~-~~Wr~~f~~~~~~~~~~~~~~ 225 (489)
.++.|++.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+.. ++|+..+...++..++..+..
T Consensus 350 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~ 429 (438)
T PRK09952 350 IMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA 429 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 677788888888888999999999999988888854 445588899999999988744 238888888777777776666
Q ss_pred hcccCC
Q 011308 226 EFCAES 231 (489)
Q Consensus 226 ~~~~e~ 231 (489)
+.++|+
T Consensus 430 ~~~~~~ 435 (438)
T PRK09952 430 LLMKDN 435 (438)
T ss_pred HHcccc
Confidence 556654
No 161
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.33 E-value=1.6e-11 Score=120.83 Aligned_cols=162 Identities=17% Similarity=0.070 Sum_probs=123.5
Q ss_pred chhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308 304 GINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG 380 (489)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
.........|.+.++.+.+... ......++..++.++.|++.||+|||+.+..+.++..++.++..+..
T Consensus 17 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------- 88 (485)
T TIGR00711 17 DSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP-------- 88 (485)
T ss_pred HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC--------
Confidence 3455666778888888876554 55667788899999999999999999999999888888777665432
Q ss_pred chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 011308 381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCF 460 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 460 (489)
+.+..+....+.+.+.+ ...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.||++.|++.+.+++
T Consensus 89 ~~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~ 167 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGI 167 (485)
T ss_pred CHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHH
Confidence 22333444444444333 23456667889999999999999999999999999999999999999999999998887777
Q ss_pred HHHHHhhhcccCCC
Q 011308 461 LAVIYVKRNVMETK 474 (489)
Q Consensus 461 ~~~~~~~~~~~~~~ 474 (489)
+..++..+..++++
T Consensus 168 ~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 168 IVVVVAFFILPRDK 181 (485)
T ss_pred HHHHHHHHHcCCcc
Confidence 77666655555543
No 162
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.31 E-value=4.4e-11 Score=117.31 Aligned_cols=167 Identities=16% Similarity=0.027 Sum_probs=122.4
Q ss_pred HhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhc
Q 011308 298 ALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATS 374 (489)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (489)
.+....-.+....-+|.+.++.+.+... ....+.++...+.+..|+++||+|||+.+..+.++..++.++..+..+
T Consensus 15 ~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~- 93 (495)
T PRK14995 15 YIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPT- 93 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 3333334455666678888888776654 444556777788899999999999999999999988888877765432
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhccc-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 011308 375 FVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEI-FPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYT 453 (489)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 453 (489)
.+..++.-.+.+.+.+. ..+.....+.+. .|+++|++++|+......+|..++|.+.+.+.++.||++.|+
T Consensus 94 -------~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~ 165 (495)
T PRK14995 94 -------ASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFL 165 (495)
T ss_pred -------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence 23344444455554443 223333334444 477899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCC
Q 011308 454 IFGSFCFLAVIYVKRNVMET 473 (489)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~ 473 (489)
+...++++..++..+..|+.
T Consensus 166 i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 166 INVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 98888777776666666654
No 163
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.31 E-value=6.7e-11 Score=111.69 Aligned_cols=158 Identities=12% Similarity=0.015 Sum_probs=113.7
Q ss_pred HHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchh
Q 011308 307 AVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALS 383 (489)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
.....+|.+..+.+.+... ......++..++.++.|+++||+|||+.+..+.++..++..+..+..... ..+.+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 93 (365)
T TIGR00900 17 ITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG---GLNIW 93 (365)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC---CCcHH
Confidence 3344445555555555444 44555678888999999999999999999988887777666655543211 12334
Q ss_pred HHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q 011308 384 LSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAV 463 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 463 (489)
..+....+.+.+.+. ..+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||+..|.+.++..+++.
T Consensus 94 ~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~ 172 (365)
T TIGR00900 94 QVYVLAGILAIAQAF-FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISA 172 (365)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444445454444443 3355667889999999999999999999999999999999999999999998888777666655
Q ss_pred HHhhh
Q 011308 464 IYVKR 468 (489)
Q Consensus 464 ~~~~~ 468 (489)
++.+.
T Consensus 173 ~~~~~ 177 (365)
T TIGR00900 173 LLIVS 177 (365)
T ss_pred HHHHh
Confidence 54443
No 164
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.31 E-value=4.3e-11 Score=114.17 Aligned_cols=169 Identities=17% Similarity=0.142 Sum_probs=120.8
Q ss_pred HHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308 297 FALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAAT 373 (489)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (489)
...............+|.+.++.+.+... ......++..++.++.|+++||+|||+.+..+.+...++..+.....+
T Consensus 11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~ 90 (392)
T PRK10473 11 LVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET 90 (392)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc
Confidence 33333334445556678888888777665 344555677888999999999999999999888887777766654322
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 011308 374 SFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYT 453 (489)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 453 (489)
.+..+....+.+.+.+. ..+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..|.
T Consensus 91 --------~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~ 161 (392)
T PRK10473 91 --------SSLFLAGRFLQGIGAGC-CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY 161 (392)
T ss_pred --------HHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence 12223333333333222 223456678899999999999999999999999999999998888889998898
Q ss_pred HHHHHHHHHHHHhhhcccCCC
Q 011308 454 IFGSFCFLAVIYVKRNVMETK 474 (489)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~ 474 (489)
+.++++++..++.....+|++
T Consensus 162 ~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 162 TMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 888887777666655556554
No 165
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.30 E-value=9.4e-11 Score=114.24 Aligned_cols=156 Identities=12% Similarity=0.004 Sum_probs=107.6
Q ss_pred hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308 306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL 382 (489)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
.....+.+.+.++.+.+... ......++..++.++.|+++||+|||+.+..+.+...++.++..+..+ .
T Consensus 53 ~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s--------~ 124 (476)
T PLN00028 53 FAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS--------A 124 (476)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC--------H
Confidence 34445567777888887665 334455677789999999999999999988888777777665554422 1
Q ss_pred hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhccchhhH
Q 011308 383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE---------QLGPLILYT 453 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~~~ 453 (489)
...+....+.+.+.+. ..+ ...++.|.+|+++||.++|+.+...++|..+++.+.+.+.. ..||+..|.
T Consensus 125 ~~l~~~r~l~G~~~~~-~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~ 202 (476)
T PLN00028 125 TGFIAVRFFIGFSLAT-FVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFF 202 (476)
T ss_pred HHHHHHHHHHHHHHHh-hHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence 2233333334433332 222 33467899999999999999998888888888777665533 147999999
Q ss_pred HHHHHHHHHHHHhhhccc
Q 011308 454 IFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~ 471 (489)
+.++++++..++.+++.+
T Consensus 203 i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 203 VPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 998888777666554443
No 166
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.29 E-value=1.1e-10 Score=114.71 Aligned_cols=160 Identities=20% Similarity=0.113 Sum_probs=116.0
Q ss_pred ccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh--h-HH-HHH
Q 011308 70 VNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK--N-LW-GML 145 (489)
Q Consensus 70 ~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~-~~-~l~ 145 (489)
.....|.+.++.|.+.... ++......+...++.++.|+++||+|||++++.+.++.+++.++.+... + .+ ...
T Consensus 290 ~~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~ 367 (479)
T PRK10077 290 VLYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 367 (479)
T ss_pred HHHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 3445688888888876655 5666777888889999999999999999999999999888877765432 1 11 222
Q ss_pred HHHHHHhhcccc-hhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhc------ccccccchHHHHHHHhHHHH
Q 011308 146 LGRLFVGTGMGI-GPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGL------PAKEILGWWRICFWVATIPA 218 (489)
Q Consensus 146 ~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~------~l~~~~~~Wr~~f~~~~~~~ 218 (489)
.+.++.+.+.+. ..+....++.|.+|+++|++++++......+|..+++.+.+ ++.+..+ |++.|++.++..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~ 446 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMG 446 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHH
Confidence 333444444333 33677899999999999999999999988888888755543 4445666 788888888776
Q ss_pred HHHHHHhh-cccCCh
Q 011308 219 AFLALFME-FCAESP 232 (489)
Q Consensus 219 ~~~~~~~~-~~~e~~ 232 (489)
++..+..+ +.||+.
T Consensus 447 ~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 447 VLAALFMWKFVPETK 461 (479)
T ss_pred HHHHHHHHhccccCC
Confidence 66655544 456653
No 167
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.28 E-value=7e-11 Score=113.01 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=113.7
Q ss_pred HHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHH
Q 011308 312 SSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGG 388 (489)
Q Consensus 312 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
+|.+.++.+.+... ....+.++..++.+..|+++||+|||+.+..+..+..++.++..+..+ .+..++.
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~--------~~~l~~~ 110 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS--------MTQFLIA 110 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHH
Confidence 34555566666555 445556788889999999999999999999888877777666654322 2233444
Q ss_pred HHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308 389 MLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
-.+.+.+.+. ..+....++.|.+|++++++++++.+....++..++|.+.+.+.+..||+..|++.+++.++..+..++
T Consensus 111 r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 111 RFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443332 233445678899999999999999999999999999999999998889999999998888777666555
Q ss_pred cccCCC
Q 011308 469 NVMETK 474 (489)
Q Consensus 469 ~~~~~~ 474 (489)
..||++
T Consensus 190 ~lp~~~ 195 (413)
T PRK15403 190 AMPETV 195 (413)
T ss_pred hCCCCc
Confidence 566653
No 168
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.28 E-value=8e-11 Score=112.88 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=144.8
Q ss_pred hhHHHHHHHHhhhhccccccccch-hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCch--hHhhhhhH
Q 011308 50 LPHVLVAIISSFLFGYHLGVVNET-LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR--RAFQLCAL 126 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~ 126 (489)
.+.+....++.++..-..+.+... ...-.+++|++..+. ..+.-+..+..++|++++|++.||+|.| +++..+++
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI 357 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 344444455555443333333333 334455899988887 6777778888899999999999999999 99999988
Q ss_pred HHHHHHHHHhh--------hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhc
Q 011308 127 PMIIGASMSAI--------TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGL 198 (489)
Q Consensus 127 ~~~i~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~ 198 (489)
++.+..+...+ .++-+.+.+.-++.|+..|...+...++.++..|+++.+..+|++....-....+||++-+
T Consensus 358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g 437 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG 437 (477)
T ss_pred HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88766666655 6788889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHhHHHHHHHHHHhhcccCC
Q 011308 199 PAKEILGWWRICFWVATIPAAFLALFMEFCAES 231 (489)
Q Consensus 199 ~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~ 231 (489)
.+.+..++-|+.+....++.++.+++.++++.+
T Consensus 438 ~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 438 LITDATGSQRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence 999988767888888887777777776666543
No 169
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.28 E-value=1.1e-10 Score=111.79 Aligned_cols=178 Identities=15% Similarity=0.083 Sum_probs=122.3
Q ss_pred cchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 011308 288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIA 364 (489)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 364 (489)
+...+...+..+........+...++.+.++.+.+... ......++..++.++.|+++||+|||+.+..+.....++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 91 (406)
T PRK15402 12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILT 91 (406)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 33333444444333333343444456667777777655 344566778889999999999999999998888777777
Q ss_pred HHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 365 MGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (489)
.+......+ .+..+....+.+.+.+. ..+.....+.|.+|++.++++.++......++..++|.+.+.+.+
T Consensus 92 ~~~~~~~~~--------~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 162 (406)
T PRK15402 92 CLAILLAQS--------IEQFTLLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH 162 (406)
T ss_pred HHHHHHHcc--------HHHHHHHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554322 12233333333333322 234556678899999999999999998888999999999999999
Q ss_pred HhccchhhHHHHHHHHHHHHHhhhcccCCC
Q 011308 445 QLGPLILYTIFGSFCFLAVIYVKRNVMETK 474 (489)
Q Consensus 445 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (489)
..+|+..|++.++++++..+..+...||++
T Consensus 163 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 163 VLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 889999999888888777666555566554
No 170
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.28 E-value=1.1e-10 Score=110.73 Aligned_cols=160 Identities=13% Similarity=0.051 Sum_probs=120.0
Q ss_pred hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308 306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL 382 (489)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
......+|.+.++.+.+... ......++..++.++.|++.||+|||+.+..+..+.+++.++..+..+ .
T Consensus 20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~--------~ 91 (382)
T PRK10091 20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSS--------Y 91 (382)
T ss_pred HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCc--------H
Confidence 34445667777777877655 556667888999999999999999999999998888888777665432 2
Q ss_pred hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 011308 383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLA 462 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 462 (489)
+..++...+.+.+.+.. .+.......|.+|+++|+.++++......++..++|.+.+.+.+..||+..|.+.+++.++.
T Consensus 92 ~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~ 170 (382)
T PRK10091 92 LMLAIGRLVSGFPHGAF-FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAV 170 (382)
T ss_pred HHHHHHHHHHHhhhHHH-HHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHH
Confidence 33344444444443322 23445567888898899999999999999999999999999999899999999988877776
Q ss_pred HHHhhhcccCCC
Q 011308 463 VIYVKRNVMETK 474 (489)
Q Consensus 463 ~~~~~~~~~~~~ 474 (489)
.+..++..||.+
T Consensus 171 ~~~~~~~lp~~~ 182 (382)
T PRK10091 171 LASIYFWVPDIR 182 (382)
T ss_pred HHHHHHhCCCCC
Confidence 665555566643
No 171
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.27 E-value=8.2e-11 Score=112.13 Aligned_cols=150 Identities=17% Similarity=0.106 Sum_probs=108.6
Q ss_pred HHHHhcCCCCCchhHHH---HHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHH
Q 011308 314 TVFKNAGVPSDSGNICV---GIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGML 390 (489)
Q Consensus 314 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (489)
.+.++.+.+........ .+...+..++.|+++||++||+.+..+.....++.+.+.+.. +.+..+....
T Consensus 36 ~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~ 107 (400)
T PRK11646 36 RFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH--------EPWLLWLSCI 107 (400)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHH
Confidence 33455677766644444 455566688899999999999999999988888877765432 2233334444
Q ss_pred HHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcc
Q 011308 391 LFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNV 470 (489)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
+.+.+.+. ..+...+++.|.+|+++|++++|+.+...++|..++|.+.+.+. ..||+..|++.+.++++..++.....
T Consensus 108 l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~ 185 (400)
T PRK11646 108 LSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLL 185 (400)
T ss_pred HHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444332 33455667889999999999999999999999999999999998 67999999888877776655544445
Q ss_pred cCC
Q 011308 471 MET 473 (489)
Q Consensus 471 ~~~ 473 (489)
|+.
T Consensus 186 ~~~ 188 (400)
T PRK11646 186 PAY 188 (400)
T ss_pred Ccc
Confidence 543
No 172
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.27 E-value=3.4e-11 Score=113.11 Aligned_cols=157 Identities=19% Similarity=0.126 Sum_probs=115.9
Q ss_pred hHHHHhHH-HHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011308 306 NAVFYFSS-TVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGA 381 (489)
Q Consensus 306 ~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (489)
.......+ .+.++.+.+... ......++..++.++.|+++||+|||+.+..+.++.+++.++..+. .+
T Consensus 13 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------~~ 84 (352)
T PF07690_consen 13 SIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--------SN 84 (352)
T ss_dssp HHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--------CC
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--------hh
Confidence 34444555 555667776666 4445567888999999999999999999999988888884444432 11
Q ss_pred hhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 011308 382 LSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFL 461 (489)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 461 (489)
.+..+....+.+.+.+ ...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..|++.++++++
T Consensus 85 ~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 163 (352)
T PF07690_consen 85 FWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLI 163 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHH
T ss_pred HHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhh
Confidence 2334444445554443 234566778999999999999999999999999999999999999888999999999999888
Q ss_pred HHHHhhhccc
Q 011308 462 AVIYVKRNVM 471 (489)
Q Consensus 462 ~~~~~~~~~~ 471 (489)
..++...+.+
T Consensus 164 ~~il~~~~~~ 173 (352)
T PF07690_consen 164 AAILFILFLP 173 (352)
T ss_dssp HHHHHHCCC-
T ss_pred hhhhHhhhhh
Confidence 8775333333
No 173
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=99.27 E-value=2.4e-10 Score=105.71 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=124.0
Q ss_pred hhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHH
Q 011308 280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLG 356 (489)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 356 (489)
+++.++....+++...++.+ +...+.+++--++++.+..... .....-.+.++.-++.+++.+|+|+-+++..
T Consensus 366 ~~~~s~~~llff~~av~mG~----g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~l 441 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGA----GVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYL 441 (618)
T ss_pred HHhcCCCEEehhHHHHHHHH----HHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeee
Confidence 45666666655555555554 3344444444455555533333 3344446778888899999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHH-HHHHHHH
Q 011308 357 SFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVH-WVINFFV 435 (489)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~ 435 (489)
++.+..+=++.+....+ +|.++..-++-+...+..+..+ .+|++...|++.+.++.|+..... .+|-.+|
T Consensus 442 gLa~~~~Rf~~~S~L~n--------~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~G 512 (618)
T KOG3762|consen 442 GLACNVGRFLYYSYLQN--------PWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLG 512 (618)
T ss_pred hhhHHHHHHHHHHHhcC--------chheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchh
Confidence 88888877766665533 3445555566666666555434 448999999999999999998865 5788999
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHhh
Q 011308 436 GLLFLRLLEQLGPLILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 436 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
..++|.+.+.+|....|..+++.|++..++..
T Consensus 513 slIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 513 SLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred hhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888887777665543
No 174
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.27 E-value=1.6e-10 Score=108.33 Aligned_cols=159 Identities=17% Similarity=0.079 Sum_probs=112.7
Q ss_pred hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308 306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL 382 (489)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
..+...+|.+.++.+.+... ......++..++.+..|+++||+|||+.+.........+.+.. ... .+.
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~~-------~~~ 79 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL-LDP-------FNY 79 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH-HHh-------ccH
Confidence 44555677777777777666 3444567788999999999999999887665544443332211 110 122
Q ss_pred hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 011308 383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLA 462 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 462 (489)
...+..-++.+.+.+. .+.......|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..|.+.+++.++.
T Consensus 80 ~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~ 157 (368)
T TIGR00903 80 EWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAG 157 (368)
T ss_pred HHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 3344444555544432 22333456788999999999999999999999999999999999999999999988888887
Q ss_pred HHHhhhcccCCC
Q 011308 463 VIYVKRNVMETK 474 (489)
Q Consensus 463 ~~~~~~~~~~~~ 474 (489)
.++.++..||..
T Consensus 158 ~~~~~~~lp~~p 169 (368)
T TIGR00903 158 IILVLAALPALP 169 (368)
T ss_pred HHHHHHHcCCCC
Confidence 777776777643
No 175
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.27 E-value=6.6e-11 Score=114.84 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=106.7
Q ss_pred cccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc--CchhHh-hhhhHHHHHHHHHHhh--hhhHH
Q 011308 69 VVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI--GRRRAF-QLCALPMIIGASMSAI--TKNLW 142 (489)
Q Consensus 69 ~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~i~~~~~~~--~~~~~ 142 (489)
.....+|.+.++ .|.+..+. +++...+.++..++.++.|+++||+ |||+.. .....+..++.++..+ ..+.+
T Consensus 271 ~~~~~~P~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 348 (452)
T PRK11273 271 GILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPT 348 (452)
T ss_pred HHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChH
Confidence 344566766554 68877666 8888889999999999999999999 555432 2222333333332222 23444
Q ss_pred HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHH-HHHHhhcccccccchHHHHHHHhHHHHHHH
Q 011308 143 GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGIL-VALFVGLPAKEILGWWRICFWVATIPAAFL 221 (489)
Q Consensus 143 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~ 221 (489)
...++.++.|.+..........+..|.+|+++|++++|+.+....+|.. ++|.+.+.+.+..| |+..|++.++.+++.
T Consensus 349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~ 427 (452)
T PRK11273 349 VDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILA 427 (452)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHH
Confidence 4455555566543333333445678999999999999999888777765 57999999999988 999999888777666
Q ss_pred HHHhh
Q 011308 222 ALFME 226 (489)
Q Consensus 222 ~~~~~ 226 (489)
++...
T Consensus 428 ~~~~~ 432 (452)
T PRK11273 428 VILLI 432 (452)
T ss_pred HHHHH
Confidence 55543
No 176
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.27 E-value=7.1e-11 Score=116.20 Aligned_cols=161 Identities=15% Similarity=0.042 Sum_probs=107.7
Q ss_pred cchhhhhhhcccccccchH---------HHH-HHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhh
Q 011308 71 NETLESISLDLGFSGSTMA---------EGL-VVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKN 140 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~---------~g~-~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~ 140 (489)
....|.+.++.|.+..+.. ... ......++..++.++.++++||+|||++++.+.++.+++.++.++..+
T Consensus 308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~ 387 (502)
T TIGR00887 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN 387 (502)
T ss_pred ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3346777777777644210 001 233344566678889999999999999998888887777665554321
Q ss_pred ----HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc----------ch
Q 011308 141 ----LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL----------GW 206 (489)
Q Consensus 141 ----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~----------~~ 206 (489)
...+...-+...++.....+....+..|.+|.+.|+++.++.+....+|.++++.+.+.+.+.. +
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 466 (502)
T TIGR00887 388 HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW- 466 (502)
T ss_pred hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc-
Confidence 1111111111122222234556677899999999999999999999999999999998887742 2
Q ss_pred HHHHHHHhHHHHHHHHHHhhcccCCh
Q 011308 207 WRICFWVATIPAAFLALFMEFCAESP 232 (489)
Q Consensus 207 Wr~~f~~~~~~~~~~~~~~~~~~e~~ 232 (489)
+...|++.++..++..+..+++||+.
T Consensus 467 ~~~~~~i~~~~~~~~~i~~~~lpEt~ 492 (502)
T TIGR00887 467 MGHVLEIFALFMFLGILFTLLIPETK 492 (502)
T ss_pred chHHHHHHHHHHHHHHHHheEeccCC
Confidence 45677777777766656566678864
No 177
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.26 E-value=3.5e-11 Score=114.88 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS 170 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 170 (489)
|.+.+...+...++.+..|++.||+|||+.+.++.++.++...+...+++.+.+++.++++|++..........++.+..
T Consensus 257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 336 (396)
T TIGR00882 257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF 336 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888889999999999999999999999999999988888788889999999999999987766666667788888
Q ss_pred CccchhhHHHH-HHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308 171 PAYVRGAYGSS-TQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF 224 (489)
Q Consensus 171 ~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~ 224 (489)
+++.++...+. ++....+|..+++.++|++.+..| |+..|.+.++..++..+.
T Consensus 337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence 88887776665 667889999999999999999888 999999988887666554
No 178
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.26 E-value=3.6e-11 Score=114.18 Aligned_cols=160 Identities=12% Similarity=0.029 Sum_probs=117.3
Q ss_pred hhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011308 305 INAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGA 381 (489)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (489)
........|.+.++.+.+... ......++..++.++.|+++||+|||+.+..+.++..++.++..+...
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~-------- 82 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS-------- 82 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh--------
Confidence 344445566666777777665 455666788899999999999999999999998888888777766542
Q ss_pred hhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhhHHHHHHHH
Q 011308 382 LSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVG-LLFLRLLEQLGPLILYTIFGSFCF 460 (489)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~-~~~g~l~~~~g~~~~~~~~~~~~~ 460 (489)
.+..++...+.+.+.+ ...+...+++.|.+|+++|+++.++.+....+|..++| .+.+.+.+..+|+..|.+.+++.+
T Consensus 83 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (379)
T TIGR00881 83 LWVMAALWALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI 161 (379)
T ss_pred HHHHHHHHHHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 2333344444444333 23456677889999999999999999999999999999 466666677789988888887777
Q ss_pred HHHHHhhhcccCC
Q 011308 461 LAVIYVKRNVMET 473 (489)
Q Consensus 461 ~~~~~~~~~~~~~ 473 (489)
+..++.+...+++
T Consensus 162 ~~~~~~~~~~~~~ 174 (379)
T TIGR00881 162 IVSLICFLLLRDS 174 (379)
T ss_pred HHHHHHheeeCCC
Confidence 7666655555543
No 179
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.26 E-value=4.7e-11 Score=115.12 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=157.0
Q ss_pred hHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccC--chhHhhhhhHHH
Q 011308 51 PHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIG--RRRAFQLCALPM 128 (489)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~ 128 (489)
+..+...+...+...........+|.+.++.+.+.++. +.+.++..+...++.++.|+++|+.. ++.+..++++..
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a--a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA--AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh--HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence 34556666667777777777888999999999888887 89999999999999999999999988 566677888888
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308 129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR 208 (489)
Q Consensus 129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr 208 (489)
+++.+.++++++++.++....+.|++.|.........+.|..+.++-..+.|+.....+++..+||++++.+.+..++|.
T Consensus 376 gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~ 455 (509)
T KOG2504|consen 376 GLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD 455 (509)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence 99999999999999999999999999999988888899999999999999999999999999999999999999988899
Q ss_pred HHHHHhHHHHHHHHHHhhccc
Q 011308 209 ICFWVATIPAAFLALFMEFCA 229 (489)
Q Consensus 209 ~~f~~~~~~~~~~~~~~~~~~ 229 (489)
..|+..++..++..+.++..+
T Consensus 456 ~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 456 HAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eehhhcChHHHHHHHHHHHhH
Confidence 999999998888877766655
No 180
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.26 E-value=9.7e-11 Score=113.53 Aligned_cols=153 Identities=21% Similarity=0.248 Sum_probs=135.2
Q ss_pred cccchhhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 011308 69 VVNETLESISL-DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLG 147 (489)
Q Consensus 69 ~~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~ 147 (489)
.+...+|.+.+ ++|.+.... |++.+.+.+|..++.++.+++.+|+++++++..+.++++++.+..+++++.+..++.
T Consensus 236 a~~aLlPl~a~~~l~~~a~~y--Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~ 313 (524)
T PF05977_consen 236 AVWALLPLFARDVLGGGASGY--GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA 313 (524)
T ss_pred HHHHhhhHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34456777764 577776666 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308 148 RLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF 224 (489)
Q Consensus 148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~ 224 (489)
-++.|++.....+...+.+.+..|++.||++++++.+....+..+|..+.|.+.+..| -+..+.+.++..++..++
T Consensus 314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH
Confidence 9999999888888889999999999999999999999999999999999999999998 788888777655554444
No 181
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.26 E-value=1.9e-10 Score=109.73 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=111.8
Q ss_pred hHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHH
Q 011308 311 FSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLG 387 (489)
Q Consensus 311 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
.+|.+.++.+.+... ......++..++.++.|+++||+|||+.+..+..+..++.+......+ .+..+.
T Consensus 30 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~ 101 (394)
T PRK11652 30 AIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS--------LTVLIA 101 (394)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--------HHHHHH
Confidence 456677777877766 445556778889999999999999999998888877777666554321 222333
Q ss_pred HHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhh
Q 011308 388 GMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
...+.+.+.+. ..+....+..|.+++++++.+.+..+....++..++|.+.+.+.+..||+..|.+.+++.++..++..
T Consensus 102 ~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK11652 102 ASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMA 180 (394)
T ss_pred HHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 33333333322 12344556778888889999999999999999999999999999888999999888777666555555
Q ss_pred hcccCCC
Q 011308 468 RNVMETK 474 (489)
Q Consensus 468 ~~~~~~~ 474 (489)
+..||++
T Consensus 181 ~~~~~~~ 187 (394)
T PRK11652 181 RWMPETR 187 (394)
T ss_pred HhCCccC
Confidence 4556643
No 182
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.25 E-value=1.1e-10 Score=112.80 Aligned_cols=137 Identities=14% Similarity=0.025 Sum_probs=102.3
Q ss_pred cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh--hHHHHHHHH
Q 011308 71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK--NLWGMLLGR 148 (489)
Q Consensus 71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r 148 (489)
...+|.+.++.|.+.++. +.+.+.+.++..++.++.|++.||+|||+.+..+.++..+..++....+ +...+.+..
T Consensus 251 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (426)
T PRK12307 251 FGLLPTYLAGEGFDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL 328 (426)
T ss_pred HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 445677777778776665 8888999999999999999999999999999988877766655444322 222222222
Q ss_pred HHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHH
Q 011308 149 LFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRIC 210 (489)
Q Consensus 149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~ 210 (489)
+..+.+.....+....++.|.+|+++|++++|+......+|..++|.+.+++.+..+ +...
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~ 389 (426)
T PRK12307 329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA 389 (426)
T ss_pred HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence 223333333345566788999999999999999999999999999999999998877 5543
No 183
>PRK10504 putative transporter; Provisional
Probab=99.25 E-value=2.2e-10 Score=112.09 Aligned_cols=160 Identities=14% Similarity=0.017 Sum_probs=117.7
Q ss_pred chhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308 304 GINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG 380 (489)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
.........|.+.++.|.+... ......++..++.++.|+++||+|||+.+..+..+..++.+...+..
T Consensus 25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~-------- 96 (471)
T PRK10504 25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSG-------- 96 (471)
T ss_pred hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhC--------
Confidence 3445556778888888887665 33445567778999999999999999998888777776665544322
Q ss_pred chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 011308 381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCF 460 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 460 (489)
+.+..+....+.+.+.+. ..+....++.|.+|+++++++.|+.+...++|..++|.+.|.+.+..||++.|.+...++.
T Consensus 97 ~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~ 175 (471)
T PRK10504 97 TLNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGI 175 (471)
T ss_pred CHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHH
Confidence 222334444444444433 2345666788999999999999999999999999999999999999999999988877777
Q ss_pred HHHHHhhhcccC
Q 011308 461 LAVIYVKRNVME 472 (489)
Q Consensus 461 ~~~~~~~~~~~~ 472 (489)
+..++.....++
T Consensus 176 l~~~~~~~~~~~ 187 (471)
T PRK10504 176 IGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHhCCC
Confidence 666655544444
No 184
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.23 E-value=5e-10 Score=109.41 Aligned_cols=154 Identities=19% Similarity=0.226 Sum_probs=119.0
Q ss_pred hhhhhhcccccccchHHHHHHH-HHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH---hhh-hhHHHHHHHH
Q 011308 74 LESISLDLGFSGSTMAEGLVVS-TCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS---AIT-KNLWGMLLGR 148 (489)
Q Consensus 74 ~~~i~~~~~~~~~~~~~g~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r 148 (489)
.|.+.+++|.+.++. |++.. ...++..++.++.|+++||+|+|+.+.++.++.++..+.. +.. ++.+.+.+.-
T Consensus 246 ~~~l~~~~G~s~~~~--g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~ 323 (491)
T PRK11010 246 TTFLIRGVGFDAGEV--GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV 323 (491)
T ss_pred HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344556788888777 88874 5568999999999999999999998877666555544332 232 3555555566
Q ss_pred HHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcc
Q 011308 149 LFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFC 228 (489)
Q Consensus 149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~ 228 (489)
+++.++.|...+...++..+..+++.+++..++.+...++|..+++.+.|.+.+..| |+..|.+.++.+++..+...++
T Consensus 324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence 666666566667778888999999999999999999999999999899999999888 9999999888888776666555
Q ss_pred cC
Q 011308 229 AE 230 (489)
Q Consensus 229 ~e 230 (489)
++
T Consensus 403 ~~ 404 (491)
T PRK11010 403 RQ 404 (491)
T ss_pred Hh
Confidence 54
No 185
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=99.23 E-value=2.5e-10 Score=98.53 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=133.7
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
||..+..........+ ....++..-|++++.+|++.+|. ..+.+.-.+|..+ .++.|.+.|++|++.++.+|.+..
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLG 76 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHH
Confidence 3554444444444443 44567777899999999988887 7888899999876 488899999999999999999999
Q ss_pred HHHHHHHhhh-------hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 011308 129 IIGASMSAIT-------KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK 201 (489)
Q Consensus 129 ~i~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~ 201 (489)
.+|..+...+ .++|.+.+..++.|.+.+....+......+.|| ++||++.|+.-...+++..+-..+...+.
T Consensus 77 ~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 77 FVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred HHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 9998876542 467888888888888877777777777778887 57999999999999999887777666655
Q ss_pred cccchHHHHHHHhHHHHHHHHHHhhcccCCh
Q 011308 202 EILGWWRICFWVATIPAAFLALFMEFCAESP 232 (489)
Q Consensus 202 ~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~ 232 (489)
+... -+..+.+...+.++.++..+++++.|
T Consensus 156 ~~~~-~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 156 GDDP-SSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred CCCh-HHHHHHHHHHHHHHHHHHhhheeccC
Confidence 5544 45555555555655555555555443
No 186
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.23 E-value=1.1e-10 Score=112.73 Aligned_cols=159 Identities=12% Similarity=0.058 Sum_probs=108.7
Q ss_pred HHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHH
Q 011308 309 FYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLS 385 (489)
Q Consensus 309 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (489)
....|.+.+ .+.+... ......++..++.++.|+++||++||+.+..+.++.+++.++....... ..+....
T Consensus 47 ~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l 121 (438)
T TIGR00712 47 ALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA----TSSIAIM 121 (438)
T ss_pred HhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc----cchHHHH
Confidence 333444443 4666655 4455667888999999999999999999888887777776655443211 1112222
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHHH
Q 011308 386 LGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE-QLGPLILYTIFGSFCFLAVI 464 (489)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~ 464 (489)
.....+.+.+.+... +.....+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..+|+..|++.++++++..+
T Consensus 122 ~~~~~l~g~~~g~~~-~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~ 200 (438)
T TIGR00712 122 FVLLFLNGWFQGMGW-PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVAL 200 (438)
T ss_pred HHHHHHHHHHhhcch-HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 333334444444333 3344567789999999999999999999999999988876554 46899999998888877666
Q ss_pred HhhhcccCC
Q 011308 465 YVKRNVMET 473 (489)
Q Consensus 465 ~~~~~~~~~ 473 (489)
+.++..||+
T Consensus 201 ~~~~~~~~~ 209 (438)
T TIGR00712 201 FAFAMMRDT 209 (438)
T ss_pred HHHHhccCC
Confidence 555555543
No 187
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.22 E-value=3.7e-10 Score=106.43 Aligned_cols=161 Identities=17% Similarity=0.236 Sum_probs=121.3
Q ss_pred ccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh----hH--
Q 011308 68 GVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK----NL-- 141 (489)
Q Consensus 68 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~-- 141 (489)
..+......+-++-|++..+. -+......+...++.+++..+.||+|||+.++.+..++.+..+++.... ..
T Consensus 287 ~ai~~Yst~i~~~aG~~~~~a--~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (485)
T KOG0569|consen 287 NAIFFYSTSIFKTAGFTPEEA--QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGS 364 (485)
T ss_pred ceeHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345555667788888888777 6888888888899999999999999999999999999988888776532 11
Q ss_pred H---HHHHHHHHHhhcccc-hhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHH
Q 011308 142 W---GMLLGRLFVGTGMGI-GPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIP 217 (489)
Q Consensus 142 ~---~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~ 217 (489)
| ..+++.++..++.+. ..|...-+.+|.+|++.|..++++......+...+-...-..+.+..| .+.|++..++
T Consensus 365 ~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g--~~~filF~i~ 442 (485)
T KOG0569|consen 365 WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG--PYVFILFVIP 442 (485)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhhHHHHHH
Confidence 1 123334333333222 347778899999999999999999999888888877777777777777 3777777787
Q ss_pred HHHHHHHh-hcccCCh
Q 011308 218 AAFLALFM-EFCAESP 232 (489)
Q Consensus 218 ~~~~~~~~-~~~~e~~ 232 (489)
+++..+.. ..+||+.
T Consensus 443 ~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 443 LAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHhCcccC
Confidence 77776654 4589984
No 188
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.22 E-value=2.3e-10 Score=108.59 Aligned_cols=155 Identities=20% Similarity=0.174 Sum_probs=116.3
Q ss_pred HhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHH
Q 011308 310 YFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSL 386 (489)
Q Consensus 310 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
..+|.+.++.+.+... ......++..++.++.|++.||+|||+.+..+.++..++...+.+... .+..+
T Consensus 12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~ 83 (377)
T PRK11102 12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT--------IDQLI 83 (377)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc--------HHHHH
Confidence 4456666777777665 445566778899999999999999999999988888888777665432 12233
Q ss_pred HHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Q 011308 387 GGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYV 466 (489)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
....+.+.+.+. ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..|.+.+.++++..++.
T Consensus 84 ~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 84 YMRFLHGLAAAA-ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 333444443332 2344556788999999999999999999999999999999999999999999988888887776666
Q ss_pred hhcccCC
Q 011308 467 KRNVMET 473 (489)
Q Consensus 467 ~~~~~~~ 473 (489)
.+..+|+
T Consensus 163 ~~~~~~~ 169 (377)
T PRK11102 163 FFFIPET 169 (377)
T ss_pred HHhCCcc
Confidence 5555554
No 189
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.22 E-value=4.9e-10 Score=105.90 Aligned_cols=159 Identities=16% Similarity=0.073 Sum_probs=107.7
Q ss_pred chhHHHHhHHH-HHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308 304 GINAVFYFSST-VFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS 379 (489)
Q Consensus 304 ~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
.......+.|. +.++.+.+... ......++..++.++.|+++||+|||+.+..+.++..++.+++.+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~------ 89 (366)
T TIGR00886 16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ------ 89 (366)
T ss_pred HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh------
Confidence 34445555664 55667777655 455566788899999999999999999999998888888777665531
Q ss_pred cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccc
Q 011308 380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ----------LGPL 449 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~ 449 (489)
+.+..+....+.+.+. +..+....++.|.+|+++|+++.++.....++|..+++.+.+.+.+. .+|+
T Consensus 90 -~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~ 166 (366)
T TIGR00886 90 -SYSVLLLLRLFIGIAG--GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG 166 (366)
T ss_pred -hHHHHHHHHHHHHHhc--hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 1222333334444332 22234456788999999999999999988888888888888776653 3678
Q ss_pred hhh-HHHHHHHHHHHHHhhhccc
Q 011308 450 ILY-TIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 450 ~~~-~~~~~~~~~~~~~~~~~~~ 471 (489)
+.| ...+++..+..++.+...+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~ 189 (366)
T TIGR00886 167 WAFVIVPAGILLLPALLIFFVGA 189 (366)
T ss_pred chhHHHHHHHHHHHHHHHHHhcc
Confidence 777 4445444444444333333
No 190
>TIGR00898 2A0119 cation transport protein.
Probab=99.21 E-value=8e-11 Score=116.32 Aligned_cols=138 Identities=14% Similarity=0.048 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhH--HHHHHHHHHHhhcccchhhhHHHHHHhc
Q 011308 92 LVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNL--WGMLLGRLFVGTGMGIGPAVAALYVSEV 169 (489)
Q Consensus 92 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 169 (489)
+......+....+.++.+++.||+|||+++..+.++.+++.++..+.++. +...+.-++.+++.+..++....+..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445566777888999999999999999999999999888887776544 4455556677777777788889999999
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCCh
Q 011308 170 SPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESP 232 (489)
Q Consensus 170 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~ 232 (489)
+|.+.|+.++++.+....+|.+++|.+.+ +. ..+ +..++++.++..++..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKW-LFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHH-HhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 99999999999999999999999999988 43 334 67788888877777777777788864
No 191
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.21 E-value=1.6e-10 Score=110.59 Aligned_cols=155 Identities=15% Similarity=0.064 Sum_probs=106.2
Q ss_pred hhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308 305 INAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKL-GRRVLLLGSFLGMAIAMGVQAIAATSFVSSS 379 (489)
Q Consensus 305 ~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
+..+..+++.++.+ .|.+... ..........++.+++|+++||+ |||+.+..+.++..++.+++.....
T Consensus 25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~------ 98 (493)
T PRK15462 25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI------ 98 (493)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc------
Confidence 33344455555443 5666555 34444566678889999999998 9999999999888888765543211
Q ss_pred cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 011308 380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR--IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGS 457 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 457 (489)
..........+...+.+. ..+...+++.|.+|++ +|+++.++.+...++|+.++|.+.+++.+..||+..|.+.++
T Consensus 99 -~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 99 -HPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred -chhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 011122222233333322 2355566889999875 699999999999999999999999999999999999988766
Q ss_pred HHHHHHHHhh
Q 011308 458 FCFLAVIYVK 467 (489)
Q Consensus 458 ~~~~~~~~~~ 467 (489)
..+++.+...
T Consensus 177 gm~l~li~~~ 186 (493)
T PRK15462 177 GMIAGLVIFL 186 (493)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 192
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.20 E-value=2.6e-11 Score=110.26 Aligned_cols=185 Identities=10% Similarity=-0.008 Sum_probs=139.0
Q ss_pred cchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCC---chhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 011308 288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSD---SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIA 364 (489)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 364 (489)
+.......+....+..--..++...+..-+..+.+.. .......+...+.+++.|++.||+.|++++..|..+-.++
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A 111 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA 111 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH
Confidence 3344444444554444444455545555455555443 3777788899999999999999999999999999988888
Q ss_pred HHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 365 MGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (489)
.+...+.... |.++++-.+.+.+-. ...|+...+++|.+|.++|++++++.++...+|..+|-.+.+.+.+
T Consensus 112 v~~~~fs~~F--------wq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~ 182 (493)
T KOG1330|consen 112 VFASGFSNHF--------WQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS 182 (493)
T ss_pred HHHHHHHHHH--------HHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc
Confidence 8887776432 334444555555543 3457778899999999999999999999999999999888888887
Q ss_pred Hhc-cchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHH
Q 011308 445 QLG-PLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEI 481 (489)
Q Consensus 445 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (489)
..+ |++.|...+++.++..++..++.+|++++..+|.
T Consensus 183 ~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~ 220 (493)
T KOG1330|consen 183 LTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV 220 (493)
T ss_pred CccceEEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence 776 9999999999999999988888888776544443
No 193
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=8.7e-09 Score=96.29 Aligned_cols=315 Identities=13% Similarity=0.042 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCcc
Q 011308 94 VSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAY 173 (489)
Q Consensus 94 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~ 173 (489)
.++-...+.+++++.+.+.|+.|+|..++++........+..-+- |-+-++++-.+.|+|.+..+..--.+++|..+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 677778888999999999999999999999999998887777664 4566778999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcccccccch-------H-HHHH-------------HHhHHHHHHHHHHhhcccCCh
Q 011308 174 VRGAYGSSTQIAACLGILVALFVGLPAKEILGW-------W-RICF-------------WVATIPAAFLALFMEFCAESP 232 (489)
Q Consensus 174 ~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-------W-r~~f-------------~~~~~~~~~~~~~~~~~~e~~ 232 (489)
.+.+-.++..+....+.++|..+-..+...... - ++.+ .+...+..+..+...+.|.+.
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~ 214 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD 214 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence 999999999888888888887665544322110 1 1111 111111111111122222211
Q ss_pred hHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhH
Q 011308 233 HWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFS 312 (489)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (489)
. ...+ +..+....+......+++++++...+....+..++.. ..+...|-
T Consensus 215 ~-~~~~--------------------------~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~---Sf~~~iyp 264 (461)
T KOG3098|consen 215 V-VNCK--------------------------SSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLET---SFWISIYP 264 (461)
T ss_pred h-hhhh--------------------------hhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH---HHHHhccc
Confidence 0 0000 0000011111122333444444443333333322211 11222221
Q ss_pred HHHHH--hcCCCCCc----hhHHHHHHHHHHHHHHHHHHhh---hCCchhHHHHHHHHHHHHHHHHHHhhcccC--C---
Q 011308 313 STVFK--NAGVPSDS----GNICVGIANLSGSIIAMILMDK---LGRRVLLLGSFLGMAIAMGVQAIAATSFVS--S--- 378 (489)
Q Consensus 313 ~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--- 378 (489)
..+.- ..+.+... .....+++.+++....+.+.+| +|+++.+..+..+..+..++.........+ +
T Consensus 265 t~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~ 344 (461)
T KOG3098|consen 265 TCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDS 344 (461)
T ss_pred hhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcc
Confidence 11111 12233322 3344456666777777777765 567888877777766666555443322211 0
Q ss_pred -----CcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 379 -----SGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR 441 (489)
Q Consensus 379 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 441 (489)
.+......+...+.+.+- .......+.++.+.+| +.|.++.++..+-..++..++-...+.
T Consensus 345 ~~~~~~~~~~~~~ii~~l~G~~D-~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 345 PPLLFTPSYYLALIIGFLLGFGD-ACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred cccccccchhHHHHHHHHHhhHH-HHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 011222333333333333 2344556667888886 668889888888888877766655543
No 194
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.19 E-value=2.2e-10 Score=109.16 Aligned_cols=149 Identities=16% Similarity=0.054 Sum_probs=113.8
Q ss_pred hhhhhhhcccccccchHHHHHHHHHH-HHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhh------hhhHHHHH
Q 011308 73 TLESISLDLGFSGSTMAEGLVVSTCL-GGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI------TKNLWGML 145 (489)
Q Consensus 73 ~~~~i~~~~~~~~~~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~------~~~~~~l~ 145 (489)
..+.+.+|.|++.++. |++..... ....++.++.|++.||+|+|+.+..+..+.++..+.... .++...+.
T Consensus 230 ~~~~~l~~~G~s~~~i--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (390)
T TIGR02718 230 LSKLYLVDAGWPLEWI--GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW 307 (390)
T ss_pred HhhHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence 4455667789888877 88888776 466677899999999999999998887666443333221 12333444
Q ss_pred HHHHHHhhcccchhhhHHHHHHhcCCc-cchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308 146 LGRLFVGTGMGIGPAVAALYVSEVSPA-YVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF 224 (489)
Q Consensus 146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~ 224 (489)
....+.+++.+...+.....+.+..++ +++++.+++.+...++|..++|.++|.+.+..| |+..|++.++..++..+.
T Consensus 308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHH
Confidence 555666777777778888887777776 789999999999999999999999999999888 899999887766665443
No 195
>PRK11043 putative transporter; Provisional
Probab=99.19 E-value=7.8e-10 Score=105.86 Aligned_cols=151 Identities=13% Similarity=0.086 Sum_probs=108.4
Q ss_pred HHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHH
Q 011308 312 SSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGG 388 (489)
Q Consensus 312 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
.+.+.++.+.+... ......++..++.++.|+++||++||+.+..+..+..++.+...+..+ .+..+..
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~ 100 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES--------AAQLLVL 100 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHH
Confidence 35556677776665 444556777899999999999999999998888777776666554322 2223333
Q ss_pred HHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308 389 MLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
..+.+.+.+.. .+....++.|.+|+++++...+..+....++..++|.+.+.+.+..||+..|.+.+++.++..++.+.
T Consensus 101 ~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 101 RFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 33333332221 22344567888998889999999999999999999999999999999999998888877776665554
Q ss_pred ccc
Q 011308 469 NVM 471 (489)
Q Consensus 469 ~~~ 471 (489)
..+
T Consensus 180 ~~~ 182 (401)
T PRK11043 180 LKP 182 (401)
T ss_pred cCC
Confidence 433
No 196
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.18 E-value=3.9e-10 Score=90.27 Aligned_cols=135 Identities=18% Similarity=0.175 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhh
Q 011308 329 CVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLL 408 (489)
Q Consensus 329 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (489)
...++.+++.+..+++.||++||+.+..+.....++.+...... +.+.......+.+.+.+. ..+....+.
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 76 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--------NITVLIIARFLQGFGAAF-ALVAGAALI 76 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHH-HHHhHHHHH
Confidence 34677888999999999999999998888777776666554432 122233334444444332 234566688
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccC
Q 011308 409 SEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVME 472 (489)
Q Consensus 409 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (489)
.|..|+++|+++.++.+....++..++|.+.+.+.+..+|+..+.+.+.+.+++.+..++..||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 8999999999999999999999999999999999988888888888888877777666655544
No 197
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.17 E-value=9.6e-10 Score=104.53 Aligned_cols=170 Identities=13% Similarity=0.057 Sum_probs=111.5
Q ss_pred ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308 285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM 361 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 361 (489)
|+++......++..+. ........+....+.+.+... ......+...+..++.|++.||++||+++..+..+.
T Consensus 3 ~~f~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~ 78 (393)
T PRK11195 3 KGFYAIMAAQFFSALA----DNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIK 78 (393)
T ss_pred CcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHH
Confidence 4455555554444432 222333334445555555443 445566788889999999999999999999998888
Q ss_pred HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 362 AIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR 441 (489)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 441 (489)
.++.+.+.+... .+....+.+.+. ....|...+++.|.+|+++|++++|+.+....++..+||.++|.
T Consensus 79 ~~~~~~~~~~~~-----------~~~~r~l~G~~~-a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~ 146 (393)
T PRK11195 79 LLGCLLMLFGIH-----------PLLAYGLVGIGA-AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA 146 (393)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665544321 122222333333 23456777889999999999999999999999999999999999
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHhhhcccC
Q 011308 442 LLEQLGPLILYTIFGSFCFLAVIYVKRNVME 472 (489)
Q Consensus 442 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (489)
+.+.. +...+.+.+.+.+++.+ ..+..||
T Consensus 147 l~~~~-~~~~~~i~~~~~~~~~~-~~~~l~~ 175 (393)
T PRK11195 147 LADPH-AEAALAVCALIYLLAAL-FNLFIPR 175 (393)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 98864 55555555544444333 3334444
No 198
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.17 E-value=8.8e-10 Score=107.10 Aligned_cols=154 Identities=9% Similarity=0.033 Sum_probs=110.2
Q ss_pred chhHHHHhHHHHHHh---cCCCCCc---hhHHHHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 011308 304 GINAVFYFSSTVFKN---AGVPSDS---GNICVGIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAATSFV 376 (489)
Q Consensus 304 ~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (489)
.+.....+++.++.+ .|.+... ......++..++.+++|+++|| +|||+.+..+.++.+++.+++.+...
T Consensus 25 ~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~--- 101 (475)
T TIGR00924 25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIY--- 101 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhccc---
Confidence 344455556666554 4665544 4555667888999999999999 89999999999988888777665321
Q ss_pred CCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 011308 377 SSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR---IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYT 453 (489)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 453 (489)
.+.......+.+.+.+ ...+...+++.|.+|++ +|+++.++.+...++|..++|.+.+.+.++.||+..|.
T Consensus 102 -----~~~~~~~~~l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~ 175 (475)
T TIGR00924 102 -----PDLIFYGLGTIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFN 175 (475)
T ss_pred -----HhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 1222333333333332 23456666788888764 48889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHh
Q 011308 454 IFGSFCFLAVIYV 466 (489)
Q Consensus 454 ~~~~~~~~~~~~~ 466 (489)
+.++.++++.+..
T Consensus 176 ~~~~~~~~~~l~~ 188 (475)
T TIGR00924 176 LAAVGMVIGLLTF 188 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 8776655554443
No 199
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.16 E-value=2.4e-10 Score=107.46 Aligned_cols=136 Identities=17% Similarity=0.096 Sum_probs=107.0
Q ss_pred ccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-CchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 011308 70 VNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-GRRRAFQLCALPMIIGASMSAITKNLWGMLLGR 148 (489)
Q Consensus 70 ~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 148 (489)
....+|.+.++.|.+..+. +.+.+.+.++..+++++.|++.||+ +||+.+..+.++.+++.+...+.++..... .-
T Consensus 216 ~~~~lp~~~~~~g~~~~~~--g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 292 (355)
T TIGR00896 216 LIGWLPAILISHGASAATA--GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WA 292 (355)
T ss_pred HHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence 3445677777888877666 8999999999999999999999999 566677778788887777666655433322 45
Q ss_pred HHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308 149 LFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR 208 (489)
Q Consensus 149 ~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr 208 (489)
++.|++.+...+.....+.+..+ +++++...++.+....+|..++|.+.+.+.++.+.|.
T Consensus 293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 68899999988887777766554 5667888899888888899999999999998776554
No 200
>PRK15075 citrate-proton symporter; Provisional
Probab=99.16 E-value=4.3e-10 Score=108.61 Aligned_cols=135 Identities=20% Similarity=0.104 Sum_probs=97.5
Q ss_pred cccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH-H---hhhhhHHH
Q 011308 69 VVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM-S---AITKNLWG 143 (489)
Q Consensus 69 ~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~-~---~~~~~~~~ 143 (489)
......|.+.++ +|.+.++. ++....+.++..++.+++|+++||+|||+++..+..+..+.... . ...+++..
T Consensus 256 ~~~~~~p~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (434)
T PRK15075 256 LITVYTPTFGKTVLHLSAADS--LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFAR 333 (434)
T ss_pred HHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 344556766554 78877665 78888888999999999999999999999988765544332211 1 12234444
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHH-HHHHHHHHHHHhhcccccccc
Q 011308 144 MLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQI-AACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 144 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~~~~~l~~~~~ 205 (489)
+.+..++.|++.+...+....++.|.+|+++|+...++... +..++..++|.+.+++.+..+
T Consensus 334 ~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 334 MLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 44455666666666666677889999999999999998544 444557789999999988777
No 201
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.15 E-value=5.6e-10 Score=101.97 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=118.4
Q ss_pred HHHHHHHhhhhccccccccchhhhhhhc---ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308 53 VLVAIISSFLFGYHLGVVNETLESISLD---LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI 129 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 129 (489)
.....+..++............+.+.+| +|.++++. ++..+.+..++.++.+..+++.||+|+||++.++..+..
T Consensus 142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~ 219 (310)
T TIGR01272 142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 3334444455443444444455555543 57777776 899999999999999999999999999999998888888
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308 130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI 209 (489)
Q Consensus 130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~ 209 (489)
++.++....++... ..+-++.|++.+..+|...+...+..|++ .+.+.++. ....+|..+.|.+.|.+.+..+ .+.
T Consensus 220 ~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~ 295 (310)
T TIGR01272 220 LLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQL 295 (310)
T ss_pred HHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chH
Confidence 87766665554333 34556889999999999999999888654 45666665 4566899999999999999888 788
Q ss_pred HHHHhHHH
Q 011308 210 CFWVATIP 217 (489)
Q Consensus 210 ~f~~~~~~ 217 (489)
.|++..+.
T Consensus 296 a~~v~~~~ 303 (310)
T TIGR01272 296 AFALPVPC 303 (310)
T ss_pred HHHHHHHH
Confidence 88754433
No 202
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.15 E-value=4.4e-10 Score=108.98 Aligned_cols=115 Identities=19% Similarity=0.196 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHhhcccchhhhHHHHHHhc
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT-KNLWGMLLGRLFVGTGMGIGPAVAALYVSEV 169 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 169 (489)
+++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...++++|.
T Consensus 260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 339 (437)
T TIGR00792 260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT 339 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 778888899999999999999999999999999998888887777664 4667777888899999999889999999988
Q ss_pred CC-------ccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 170 SP-------AYVRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 170 ~~-------~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
.+ ++++|...++.+....+|..+++.+.+.+.+..|
T Consensus 340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 65 4567999999999999999999999988876554
No 203
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.15 E-value=4.3e-10 Score=109.96 Aligned_cols=151 Identities=17% Similarity=0.128 Sum_probs=99.8
Q ss_pred hhHHHHhHHHHH-HhcCCCCCchhHH---HHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308 305 INAVFYFSSTVF-KNAGVPSDSGNIC---VGIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS 379 (489)
Q Consensus 305 ~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
+.....+++.++ ++.|.+....... .........+++|+++|| +|||+.+..+.++..++..++.+...
T Consensus 37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~------ 110 (500)
T PRK09584 37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH------ 110 (500)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc------
Confidence 334444555554 4567765542222 222333444689999999 59999999998888888766654321
Q ss_pred cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 011308 380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR--IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGS 457 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~ 457 (489)
..........+.+.+.+. ..+...+++.|.+|++ +++.+.++.+...++|..++|.+.|++.+..||+..|.+.++
T Consensus 111 -~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 111 -DAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred -cHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 112223333344444332 3355556788988754 355688999999999999999999999999999999988776
Q ss_pred HHHHHH
Q 011308 458 FCFLAV 463 (489)
Q Consensus 458 ~~~~~~ 463 (489)
..+++.
T Consensus 189 ~~~i~~ 194 (500)
T PRK09584 189 GMLITV 194 (500)
T ss_pred HHHHHH
Confidence 545443
No 204
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.14 E-value=3.6e-10 Score=102.11 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=133.9
Q ss_pred hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccc
Q 011308 78 SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGI 157 (489)
Q Consensus 78 ~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~ 157 (489)
+.++|++..+. .++.-...+..+++++++|++.||+|.|+++..++++..+.++..-+...-..+.++-.+.|...|+
T Consensus 280 ~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~ 357 (438)
T COG2270 280 AADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGG 357 (438)
T ss_pred HHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcch
Confidence 44899988877 7888888899999999999999999999999999999999988888777777777888899999999
Q ss_pred hhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCC
Q 011308 158 GPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAES 231 (489)
Q Consensus 158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~ 231 (489)
......++..+..|+++-++.+|+++...-.+..+||.+-+.+.+..+.-|..+....++..+.++....+|++
T Consensus 358 ~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 358 AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 99999999999999999999999999999999999999999999888767887777777766666666666654
No 205
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.14 E-value=1.3e-09 Score=105.88 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=98.1
Q ss_pred HHhcCCCCCchh---HHHHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHH
Q 011308 316 FKNAGVPSDSGN---ICVGIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLL 391 (489)
Q Consensus 316 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
.++.+.+..... ..+.....+..+++|+++|| +|||+.+..+.++..++.+.+.+.... ....++...+
T Consensus 42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-------~~ll~~~~~l 114 (489)
T PRK10207 42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-------PDLIFIALGT 114 (489)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-------hhHHHHHHHH
Confidence 344666655533 23334455666789999999 999999999999999988777754321 1112223333
Q ss_pred HHHHHhcCCCcchhhhhcccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 011308 392 FVLTFSLGAGPVPSLLLSEIFPNR--IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLA 462 (489)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 462 (489)
.+.+.+ ...|...+++.|.+|++ +|+.++++.....++|..++|.+.|++.++.||++.|++.++..+++
T Consensus 115 ~~ig~g-~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~ 186 (489)
T PRK10207 115 IAVGNG-LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIA 186 (489)
T ss_pred HHhccc-cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 333333 23456667899999876 45889999999999999999999999999999999998865433333
No 206
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.11 E-value=9.1e-10 Score=106.29 Aligned_cols=157 Identities=15% Similarity=0.085 Sum_probs=98.6
Q ss_pred ccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh--h--hhhHHHH
Q 011308 70 VNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA--I--TKNLWGM 144 (489)
Q Consensus 70 ~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~--~~~~~~l 144 (489)
+...+|.+. +++|.+.++. ++..+...++..+++++.|+++||+|||+++..+.++.++...... . .++....
T Consensus 262 ~~~~lp~~l~~~~g~s~~~~--~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (432)
T PRK10406 262 FTTYMQKYLVNTAGMHANVA--SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA 339 (432)
T ss_pred HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 334456554 5678776655 7888888888889999999999999999988776655443332111 1 1222222
Q ss_pred HHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHH-HHHHHHHhhcccccccchHHHHHHHhHHHHHHHHH
Q 011308 145 LLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACL-GILVALFVGLPAKEILGWWRICFWVATIPAAFLAL 223 (489)
Q Consensus 145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~ 223 (489)
+..-.+.+++.+...+....++.|++|++.|+.+.|+.+....+ .....|.+.+.+. ..++|...++..++..++..+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~ 418 (432)
T PRK10406 340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFL 418 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHH
Confidence 22222222333334455667889999999999999998765443 3344777777553 344366666666666655555
Q ss_pred Hhhccc
Q 011308 224 FMEFCA 229 (489)
Q Consensus 224 ~~~~~~ 229 (489)
..++++
T Consensus 419 ~~~~l~ 424 (432)
T PRK10406 419 VSLMLH 424 (432)
T ss_pred HHHHhh
Confidence 544443
No 207
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.09 E-value=9.7e-10 Score=107.32 Aligned_cols=140 Identities=12% Similarity=-0.003 Sum_probs=104.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308 326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS 405 (489)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (489)
....+.++..++.+..|++.||+|+|+.+..+.++..++.++..+.... .....++.-++.+.+.+ ...+...
T Consensus 81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~~~G~~~~-~~~~~~~ 153 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG------GIALVVFCRVIQGLAQG-SVSPATH 153 (465)
T ss_pred HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc------CchHHHHHHHHHHHhcc-cchhhHH
Confidence 4555667888999999999999999999988887777666554433211 11223333334443333 3445666
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHhhhcccC
Q 011308 406 LLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL-GPLILYTIFGSFCFLAVIYVKRNVME 472 (489)
Q Consensus 406 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (489)
.++.|.+|+++|++++|+.+....+|..+++.+.+.+.+.. ||+..|.+.+++.++..++.+...++
T Consensus 154 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~ 221 (465)
T TIGR00894 154 KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD 221 (465)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999884 99999999888877766655554443
No 208
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.08 E-value=1.2e-08 Score=96.80 Aligned_cols=164 Identities=12% Similarity=-0.021 Sum_probs=104.5
Q ss_pred hhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308 305 INAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG 380 (489)
Q Consensus 305 ~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
........+.+.+ +.+++... ...+..+.+.+.++..|++.||+|.|++...+.++..+..+...+..... .+
T Consensus 50 w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~---~~ 126 (462)
T PRK15034 50 WMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP---NT 126 (462)
T ss_pred HHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc---CC
Confidence 3333333444433 57777666 34445567778888899999999999999888888877777666542110 12
Q ss_pred chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHh---------
Q 011308 381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLL-----EQL--------- 446 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-----~~~--------- 446 (489)
+.+..++...+.+.+ + +..+.....+++.+|+++||+++|+....+++|..+++.+.+.+. +..
T Consensus 127 s~~~lli~r~l~Gig-g-~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~ 204 (462)
T PRK15034 127 PFGIFIVIALLCGFA-G-ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQAD 204 (462)
T ss_pred CHHHHHHHHHHHHHH-H-HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 233344444444443 2 233455667889999999999999998777777776666655433 322
Q ss_pred ----ccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308 447 ----GPLILYTIFGSFCFLAVIYVKRNVMET 473 (489)
Q Consensus 447 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (489)
+++....+.+.+.++..++.++..++.
T Consensus 205 g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 205 GSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 345555666676666666666555443
No 209
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.07 E-value=7.1e-09 Score=98.90 Aligned_cols=155 Identities=12% Similarity=0.055 Sum_probs=111.5
Q ss_pred hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308 306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL 382 (489)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
.......|.+.++.+.+... ......++..++++..|++.||+|||+.+..+..+.+++.+++..... ..+.
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-----~~~~ 94 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-----IMNY 94 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-----hccH
Confidence 44445667777777777655 555667888999999999999999999999999988888766543321 1122
Q ss_pred hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q 011308 383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE------------------ 444 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------------------ 444 (489)
+..+....+.+.+.+.... ....++.+..|++++++..++.+...++|..++|.+.+.+..
T Consensus 95 ~~~l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~ 173 (410)
T TIGR00885 95 TLFLVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEE 173 (410)
T ss_pred HHHHHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHH
Confidence 3344444455555444332 334467788898999999999999999999999999887753
Q ss_pred --------HhccchhhHHHHHHHHHHHHHh
Q 011308 445 --------QLGPLILYTIFGSFCFLAVIYV 466 (489)
Q Consensus 445 --------~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
..+|+.+|.+.+++.++..++.
T Consensus 174 ~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 174 LSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2358888888888766655444
No 210
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.05 E-value=2.5e-09 Score=100.68 Aligned_cols=171 Identities=19% Similarity=0.266 Sum_probs=130.5
Q ss_pred HHhhhhccccccccchhhhhhhccc-ccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh
Q 011308 58 ISSFLFGYHLGVVNETLESISLDLG-FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA 136 (489)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~ 136 (489)
+..++.+.....+....+.+.+|.| .+.+.. |.+.+...++-.+.-...+++..|+|.|+++.++.+.+++=..+.+
T Consensus 214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~--g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a 291 (400)
T PF03825_consen 214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTI--GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA 291 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666777778877 555544 6777777777788888999999999999999999999999888888
Q ss_pred hh-hhHHHHHH----HHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHH-HHHHHHHHHHhhcccccccch----
Q 011308 137 IT-KNLWGMLL----GRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIA-ACLGILVALFVGLPAKEILGW---- 206 (489)
Q Consensus 137 ~~-~~~~~l~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~i~~~~~~~l~~~~~~---- 206 (489)
.. ++.+...+ ...++|+..+....+...++.+..|++.|+++.++++.. .++|..+|..++|++.+..+.
T Consensus 292 ~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~ 371 (400)
T PF03825_consen 292 YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF 371 (400)
T ss_pred HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence 77 55444333 356799999999999999999999999999999998774 689999999999999987662
Q ss_pred -HHHHHHHhHHHHHHHHHHhhc-ccC
Q 011308 207 -WRICFWVATIPAAFLALFMEF-CAE 230 (489)
Q Consensus 207 -Wr~~f~~~~~~~~~~~~~~~~-~~e 230 (489)
|...+.+.+...++..+++.+ .+|
T Consensus 372 ~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 372 DWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 445556666555555444333 444
No 211
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=99.04 E-value=3.5e-08 Score=87.52 Aligned_cols=361 Identities=13% Similarity=0.083 Sum_probs=191.0
Q ss_pred chhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc-----ccCchhHhh
Q 011308 48 RSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD-----GIGRRRAFQ 122 (489)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~ 122 (489)
.....+..+.+.+.+.+.-.+... .+|.+.+.-|.|.++. +. .+....-+ .--++|.++.| |+||||..+
T Consensus 28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~-fS~ay~P~-sLKllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AI-FSFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hh-hhhhhhHH-HHHHHHHhhhHHHHHHhhcccccee
Confidence 334456667777888888888888 8999988778887766 32 22222222 33578999999 999998754
Q ss_pred h-hhHHHHHHHHHHhh-----------hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHH
Q 011308 123 L-CALPMIIGASMSAI-----------TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGI 190 (489)
Q Consensus 123 ~-~~~~~~i~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 190 (489)
+ +..+.+....+.+. .++...+...-++.-+..+.--.+.-.+.-.+..+++-|-+......+...|.
T Consensus 103 vp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gy 182 (510)
T KOG3574|consen 103 VPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGY 182 (510)
T ss_pred eehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhH
Confidence 3 33444443333332 23333444455566666666667777788888889999999888888888888
Q ss_pred HHHHHhhccccc-------ccchHH---------HHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCC
Q 011308 191 LVALFVGLPAKE-------ILGWWR---------ICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGG 254 (489)
Q Consensus 191 ~i~~~~~~~l~~-------~~~~Wr---------~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 254 (489)
.++..+--.+.+ ..+ |. -..+..+...++...++.+..+++.. +
T Consensus 183 fL~~~ifLaL~s~dF~N~y~rs-~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~--------~----------- 242 (510)
T KOG3574|consen 183 FLGNVVFLALESPDFCNTYLRS-IPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDE--------S----------- 242 (510)
T ss_pred HhhcceeeEecChhhhhHHHhc-CcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch--------h-----------
Confidence 887766544433 011 11 11222233333333333333332210 0
Q ss_pred CCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHH
Q 011308 255 LHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIAN 334 (489)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (489)
..++.+....+....++++++-+..+.........=. ++.......+.-+-+.|++......+. +..
T Consensus 243 --------~~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~----gf~a~da~t~LkLle~Gv~ke~Lal~~-v~~ 309 (510)
T KOG3574|consen 243 --------VDEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKL----GFQAADALTSLKLLEHGVPKEELALIA-VPL 309 (510)
T ss_pred --------hhhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHH----HhhhhhhccchHHHHcCCChhHheeee-eeh
Confidence 0001111112222345666766665544333332222 122222222333445677665533222 455
Q ss_pred HHHHHHHHHHHhhhC--CchhHH------HHHHHHHHHHHHHHHHhhcccCCCcch--hHHHHHH--HHHHHHHhcCCCc
Q 011308 335 LSGSIIAMILMDKLG--RRVLLL------GSFLGMAIAMGVQAIAATSFVSSSGAL--SLSLGGM--LLFVLTFSLGAGP 402 (489)
Q Consensus 335 ~~~~~~~g~l~d~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~ 402 (489)
++..+..++...|+. +|++.. .-.....+...+....+. ....+... ...++.+ -.+..++......
T Consensus 310 ~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~-~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv 388 (510)
T KOG3574|consen 310 VPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPT-LGHSDGTFPRGYYILLITSYAFHQVFVTSMFV 388 (510)
T ss_pred hhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcc-cccCCCceeechHHHHHHHHHHhhhHHHHHHH
Confidence 555565666555542 232211 111122222222222222 21111111 1111111 1111121111222
Q ss_pred chhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308 403 VPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 447 (489)
..++..+.+.++...|+.+.+.|+..++|+-.-..+..++.|..+
T Consensus 389 ~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 389 SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 334567888999999999999999999999988888888887544
No 212
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.04 E-value=2.1e-09 Score=117.23 Aligned_cols=144 Identities=14% Similarity=0.142 Sum_probs=120.1
Q ss_pred hhh-hhhhccccccc-chHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308 73 TLE-SISLDLGFSGS-TMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF 150 (489)
Q Consensus 73 ~~~-~i~~~~~~~~~-~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 150 (489)
.+| .+.+++|.+.. +. |++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+..+.+.++++.++
T Consensus 254 ~~~~~~~~~~g~s~~~~~--g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1146)
T PRK08633 254 NFPAYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFL 331 (1146)
T ss_pred hhHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344 44566788776 55 899999999999999999999999999999999998888888888888898888899999
Q ss_pred HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc-cchHHHHHHHhHHHHH
Q 011308 151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI-LGWWRICFWVATIPAA 219 (489)
Q Consensus 151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-~~~Wr~~f~~~~~~~~ 219 (489)
.|++.+...+...+++.+..|+++|++++++.+....+|.++++.+++.+... .+ +...|++.+.+.+
T Consensus 332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~ 400 (1146)
T PRK08633 332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLS-PAGLFYLIALVTL 400 (1146)
T ss_pred HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Confidence 99999998888999999999999999999999999999998888887766542 23 5566665554433
No 213
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.03 E-value=3.6e-09 Score=93.93 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308 326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS 405 (489)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (489)
+...+++...+.++..|.++||+|||.++.++.+..++..++.+...+. ......=+..+..-+...+..
T Consensus 73 lGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F----------~afv~aR~l~Gi~kgnl~v~r 142 (451)
T KOG2615|consen 73 LGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF----------AAFVLARFLGGIFKGNLSVIR 142 (451)
T ss_pred HhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhccCchHHHH
Confidence 6677889999999999999999999999999999998887777665432 111111123333345556778
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 406 LLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 406 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (489)
++++|++++++|+.+++.++....+|.++||.++|++..
T Consensus 143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 899999999999999999999999999999999999887
No 214
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.01 E-value=1e-08 Score=96.37 Aligned_cols=160 Identities=14% Similarity=0.022 Sum_probs=107.8
Q ss_pred HHHHhHHHHHHhcCCCCCchhHHH--HHHHHHHHHHHHHHHhhh-----CCchhH-HHHHHHHHHHHHHHHHHhhcccCC
Q 011308 307 AVFYFSSTVFKNAGVPSDSGNICV--GIANLSGSIIAMILMDKL-----GRRVLL-LGSFLGMAIAMGVQAIAATSFVSS 378 (489)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 378 (489)
......|.+.++.|.+........ .+...+ .++.|.+.||+ |||+.+ ..+.+...+....+.+...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~----- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP----- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----
Confidence 344456777888888887754444 333333 88999999998 788864 5555555555444443321
Q ss_pred CcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cch
Q 011308 379 SGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG--------PLI 450 (489)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--------~~~ 450 (489)
....+.......+.+ .......+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..| |+.
T Consensus 80 ~~~l~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~ 158 (356)
T TIGR00901 80 STDLPLLAGLAFLIA-FFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY 158 (356)
T ss_pred chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence 122222222222222 22223345566788999999999999999999999999999999999988888 999
Q ss_pred hhHHHHHHHHHHHHHhhhcccCC
Q 011308 451 LYTIFGSFCFLAVIYVKRNVMET 473 (489)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~ 473 (489)
.|.+.+++.++..+..++..||+
T Consensus 159 ~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 159 IFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC
Confidence 99888887777665555445554
No 215
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.00 E-value=2.7e-09 Score=115.95 Aligned_cols=148 Identities=12% Similarity=0.040 Sum_probs=117.9
Q ss_pred ccchhhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh----------
Q 011308 70 VNETLESISL-DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT---------- 138 (489)
Q Consensus 70 ~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---------- 138 (489)
+...+|.+.+ .+|.+.... |++.+.+.++.++++++.|+++|+.++++.+..+.++.+++.+..++.
T Consensus 244 ~~~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (1140)
T PRK06814 244 VLSQLPLLAKETLGGDENVA--TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQ 321 (1140)
T ss_pred HHHHhHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccc
Confidence 3334565554 478777666 999999999999999999999999888887777766666665544443
Q ss_pred ----------hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308 139 ----------KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR 208 (489)
Q Consensus 139 ----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr 208 (489)
++.+.++++.++.|++.+...+...+++.+.+|+++||+++|+.+....+|..+++++.+.+.....++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~ 401 (1140)
T PRK06814 322 LKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIP 401 (1140)
T ss_pred ccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 6778888889999999999999999999999999999999999999999999999999888874332266
Q ss_pred HHHHHhHHHHH
Q 011308 209 ICFWVATIPAA 219 (489)
Q Consensus 209 ~~f~~~~~~~~ 219 (489)
..|++.++..+
T Consensus 402 ~~~~~~~~~~~ 412 (1140)
T PRK06814 402 WIILFIALANL 412 (1140)
T ss_pred HHHHHHHHHHH
Confidence 66665554433
No 216
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.99 E-value=3.8e-09 Score=102.35 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=106.6
Q ss_pred HhHHHHHHhcCCCCCc--hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHH
Q 011308 310 YFSSTVFKNAGVPSDS--GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLG 387 (489)
Q Consensus 310 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
.-++.+..+.|-+... +.....++..++.++.|+++|.+|||...+.+.++..++.++.+...+ ....+.
T Consensus 65 ~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~--------~~~~ia 136 (599)
T PF06609_consen 65 SILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN--------MNTFIA 136 (599)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc--------HHHHHH
Confidence 3345666666665554 445566788888999999999999999999999999999888775433 334566
Q ss_pred HHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhh
Q 011308 388 GMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVK 467 (489)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 467 (489)
...+.+.+.+. .......++|..|.+.|..+.++.....-....++|.+...+..+.+|++.|++..++..++.++.+
T Consensus 137 g~~l~GvgaG~--~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 137 GMVLYGVGAGV--QELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHHHHhhHH--HHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 66776665433 2344556899999999988877666554444556677766666566899999988887777665544
Q ss_pred h
Q 011308 468 R 468 (489)
Q Consensus 468 ~ 468 (489)
+
T Consensus 215 ~ 215 (599)
T PF06609_consen 215 F 215 (599)
T ss_pred H
Confidence 3
No 217
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.99 E-value=5.4e-09 Score=99.99 Aligned_cols=146 Identities=21% Similarity=0.197 Sum_probs=104.6
Q ss_pred hhhhhcccccccchHHHHHHHHHH-HHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH---hhh-hhHHHHHHHH-
Q 011308 75 ESISLDLGFSGSTMAEGLVVSTCL-GGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS---AIT-KNLWGMLLGR- 148 (489)
Q Consensus 75 ~~i~~~~~~~~~~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r- 148 (489)
+.+.+++|++.++. |++.+... .+..++.++.|++.||+|+|+.+..+.++..+..+.. ++. ++.+.+.+.-
T Consensus 234 ~~l~~~~G~~~~~~--g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 311 (402)
T PRK11902 234 TFLIRGAGFSAGEV--GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG 311 (402)
T ss_pred HHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 45667788887766 88876654 5688999999999999999998887777666554433 343 4555555554
Q ss_pred ---HHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHh
Q 011308 149 ---LFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFM 225 (489)
Q Consensus 149 ---~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~ 225 (489)
+..|++.+...+....++.+.+|.+++ ++++...++|..+++.++|.+.+..| |+..|.+.++.+++..+..
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 312 IENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence 345555666677777777777776554 44555566777767778999999999 9999999888877765554
Q ss_pred hc
Q 011308 226 EF 227 (489)
Q Consensus 226 ~~ 227 (489)
+.
T Consensus 387 ~~ 388 (402)
T PRK11902 387 WL 388 (402)
T ss_pred HH
Confidence 33
No 218
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.99 E-value=7e-09 Score=88.18 Aligned_cols=159 Identities=15% Similarity=0.073 Sum_probs=117.2
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
....+.++|..+....+.....++ -..++.+|+|.... +-+.+....-.++.+++.|.++||+|++...+.+..+.
T Consensus 265 pfw~~~iicv~yyva~fPFi~lg~--~fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~ 340 (459)
T KOG4686|consen 265 PFWVLVIICVLYYVAWFPFITLGP--MFFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL 340 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhH--HHHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence 344555566665555444433333 24688999998777 77777777777888999999999999998887775544
Q ss_pred HHH-HHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch-
Q 011308 129 IIG-ASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW- 206 (489)
Q Consensus 129 ~i~-~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~- 206 (489)
.+. -....+ +++.=.++..+.|+..+.........++...|+++.|++.+..+...++|..+.|++++.+.+..++
T Consensus 341 tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y 418 (459)
T KOG4686|consen 341 TLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY 418 (459)
T ss_pred HHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence 433 333332 3444456777889987777666778899999999999999999999999999999999999987764
Q ss_pred -HHHHHHH
Q 011308 207 -WRICFWV 213 (489)
Q Consensus 207 -Wr~~f~~ 213 (489)
|--.|.+
T Consensus 419 ~~le~ffl 426 (459)
T KOG4686|consen 419 DNLEAFFL 426 (459)
T ss_pred hhHHHHHH
Confidence 4444444
No 219
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.98 E-value=8.5e-07 Score=83.34 Aligned_cols=376 Identities=12% Similarity=0.031 Sum_probs=186.8
Q ss_pred HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308 53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA 132 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 132 (489)
...++...++...+..+.....|.+..+..-+ +-.-.+...-.-.+...+.++..|.+.||..|.++...+.+..-++.
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~-sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPG-SLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence 34556677777777777777777777665321 21111233333345556778888999999999998877765543332
Q ss_pred HHHh------hh--h----hHHHH---HHHHHHHhhcccchh-hhHHHHHHhcC------CccchhhHHHHHHHHHHHHH
Q 011308 133 SMSA------IT--K----NLWGM---LLGRLFVGTGMGIGP-AVAALYVSEVS------PAYVRGAYGSSTQIAACLGI 190 (489)
Q Consensus 133 ~~~~------~~--~----~~~~l---~~~r~l~G~~~~~~~-~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~ 190 (489)
.+.+ +. . +-+.. ++.-.+.|.-.-... ....++=.||. +++.+.+.++...-.--+..
T Consensus 83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck 162 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK 162 (432)
T ss_pred HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 2221 11 1 11222 222222222111111 11112224443 23445566666666667788
Q ss_pred HHHHHhhcccccccchHHHHHHHhHHHHHHHHHH-hhcc----cCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHh
Q 011308 191 LVALFVGLPAKEILGWWRICFWVATIPAAFLALF-MEFC----AESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELS 265 (489)
Q Consensus 191 ~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (489)
+++|++.|.+.+..+ .+....+.+...++..+. .+++ ...|. +..+++.++........ ...+.........
T Consensus 163 llaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 239 (432)
T PF06963_consen 163 LLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSILK 239 (432)
T ss_pred HHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc-ccccccchhhHHH
Confidence 999999999998777 676666666555554433 1111 22222 22222221111100000 0000000000000
Q ss_pred hhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHH---HHHHHHHHHHHHH
Q 011308 266 KSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNIC---VGIANLSGSIIAM 342 (489)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g 342 (489)
+..+.-++....|+..++.+.+...+-..++ +++.... ......++...|++...+... ..+.++.+.++..
T Consensus 240 ~~~~~~~~~~~~w~~Y~~q~vflas~alalL----Y~TVLsf-~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p 314 (432)
T PF06963_consen 240 RLWNPLRTIIRGWRTYFRQPVFLASFALALL----YFTVLSF-GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYP 314 (432)
T ss_pred HHHHHHHHHhccHHHHHhCHHHHHHHHHHHH----HHHHhcC-cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011111122345555555544433322222 2222222 233444556668888775443 4466788899999
Q ss_pred HHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCC--CcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHH
Q 011308 343 ILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSS--SGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKA 420 (489)
Q Consensus 343 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 420 (489)
++.+|+|..+.-..+......++.+..........+ ..+....+.+.++--.+.- ++-....-+++|..|+++||+.
T Consensus 315 ~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v 393 (432)
T PF06963_consen 315 WLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAV 393 (432)
T ss_pred HHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHH
Confidence 999999987776666665544433332222111111 1122222222222222211 1122333478899999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011308 421 MAVCMAVHWVINFFVGLL 438 (489)
Q Consensus 421 ~g~~~~~~~~g~~~~~~~ 438 (489)
.|+-+..+++...+.-.+
T Consensus 394 ~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 394 SGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999877655443
No 220
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.97 E-value=2.1e-09 Score=99.27 Aligned_cols=141 Identities=17% Similarity=0.195 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhc
Q 011308 90 EGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEV 169 (489)
Q Consensus 90 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 169 (489)
.|.+.+...+.-++.-.+..++.+|+|.|+.++++.++.++=-++++++++.+.+.+.+.+.|+-.+........++++.
T Consensus 261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~ 340 (412)
T PF01306_consen 261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH 340 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhHHHHH-HHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc-ccCC
Q 011308 170 SPAYVRGAYGSST-QIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF-CAES 231 (489)
Q Consensus 170 ~~~~~r~~~~~~~-~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~ 231 (489)
+|+|-.++...+. +.+.++|..+.+.++|.+.++.| .+..|++.+.+.++..++..+ ++++
T Consensus 341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCC
Confidence 9998877777664 67889999999999999999999 899999888877766555444 5443
No 221
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.97 E-value=8e-06 Score=77.82 Aligned_cols=281 Identities=10% Similarity=0.033 Sum_probs=155.5
Q ss_pred HHHHHHHhhhhccccccccchhhhhhhccccccc---chHHHHHHHHHHHHHHHH-HHHHHHhhcccCchhHhhhhhHHH
Q 011308 53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGS---TMAEGLVVSTCLGGAFVG-SMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~g~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
++.+.+..|+..++.+ .+-.+++.+..+.. .....++-+...+..++. .++.+++++|++|++++-.....+
T Consensus 9 ~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F 84 (472)
T TIGR00769 9 FLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPF 84 (472)
T ss_pred HHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHH
Confidence 3344444444444332 35556667666321 122378888777776666 889999999999999998877777
Q ss_pred HHHHHHHhhh----h---------------------------hHHHHHHHHHHHhhcccchhh-hHHHHHHhcCCccchh
Q 011308 129 IIGASMSAIT----K---------------------------NLWGMLLGRLFVGTGMGIGPA-VAALYVSEVSPAYVRG 176 (489)
Q Consensus 129 ~i~~~~~~~~----~---------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~ 176 (489)
....+++++. + +.|...+.-+...+-.....+ .-..++.|.++.+|-.
T Consensus 85 ~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qak 164 (472)
T TIGR00769 85 LGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAK 164 (472)
T ss_pred HHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 6666665543 1 122333333344444444444 6678899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccccc-------ccchHH----HHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHH
Q 011308 177 AYGSSTQIAACLGILVALFVGLPAKE-------ILGWWR----ICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAE 245 (489)
Q Consensus 177 ~~~~~~~~~~~~G~~i~~~~~~~l~~-------~~~~Wr----~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 245 (489)
|..++++.+.++|.++++.+..++.+ ..+.|. ..+.+.++...+...+..++.+.. ..+++..+
T Consensus 165 Rfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~~~~-- 239 (472)
T TIGR00769 165 RFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPRSYN-- 239 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccccc--
Confidence 99999999999999999988887762 222252 233333333333333322221110 00000000
Q ss_pred HHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc
Q 011308 246 AELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS 325 (489)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (489)
.++..++++.+.....+++.++++|..+.+.+...++... .+.+..-.....++.--+...
T Consensus 240 ---------------~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~----~nlve~~~k~~v~~~~p~~~~ 300 (472)
T TIGR00769 240 ---------------PALKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGIS----INLVEVTWKSKLKAQYPSPNE 300 (472)
T ss_pred ---------------hhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHH
Confidence 0000111222333456788888888776655554444432 222222222222222222211
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308 326 -------GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM 361 (489)
Q Consensus 326 -------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 361 (489)
.....++..++..++.+++.+|+|-+......-+..
T Consensus 301 ~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~ 343 (472)
T TIGR00769 301 YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVM 343 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334445566666677789999998776555444433
No 222
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1.4e-09 Score=98.92 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=96.9
Q ss_pred ccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc----cCchhHhhhh-hHHHHHHHHHHhhh
Q 011308 64 GYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG----IGRRRAFQLC-ALPMIIGASMSAIT 138 (489)
Q Consensus 64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~l~~~-~~~~~i~~~~~~~~ 138 (489)
.+....--...+++.++.|++..-. +.+--...+...+.+++.|..+|| |||||.++.. .++..++.++.+++
T Consensus 45 qf~wA~elsy~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~a 122 (498)
T KOG0637|consen 45 QFGWALELSYLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYA 122 (498)
T ss_pred HHHHHHHhccccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhH
Confidence 3344444445666777888876555 566666677778889999999995 8988776554 56666777777776
Q ss_pred hhHH-----------------HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhh-HHHHHHHHHHHHHHHHHHhhccc
Q 011308 139 KNLW-----------------GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGA-YGSSTQIAACLGILVALFVGLPA 200 (489)
Q Consensus 139 ~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~i~~~~~~~l 200 (489)
.++. .++++--+.=++.-.....+.+++.|...+++|.+ +.+.+.....+|.++|..+++++
T Consensus 123 aDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 123 ADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 5433 23333334445555677788999999998877777 99999999999999998888754
Q ss_pred c
Q 011308 201 K 201 (489)
Q Consensus 201 ~ 201 (489)
.
T Consensus 203 ~ 203 (498)
T KOG0637|consen 203 G 203 (498)
T ss_pred C
Confidence 3
No 223
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.97 E-value=1.1e-08 Score=94.29 Aligned_cols=158 Identities=28% Similarity=0.430 Sum_probs=125.7
Q ss_pred hhhccccccccchhhhhhhccccccc--chHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh
Q 011308 61 FLFGYHLGVVNETLESISLDLGFSGS--TMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT 138 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~ 138 (489)
+....+........+.+..+++.+.. .. ++..+.+.++..+++++.|.++||+|||+.+..+.....++.++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 89 (338)
T COG0477 12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA 89 (338)
T ss_pred HHHHHhcchHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence 33335555666777778777765542 34 899999999999999999999999999988888887766666777776
Q ss_pred hh--HHHHHHHHHHHhhcccchhhhHHHHHHhcCCc-cchhhHHHHHHH-HHHHHHHHHHHhhcccccc--cchHHHHHH
Q 011308 139 KN--LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA-YVRGAYGSSTQI-AACLGILVALFVGLPAKEI--LGWWRICFW 212 (489)
Q Consensus 139 ~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~i~~~~~~~l~~~--~~~Wr~~f~ 212 (489)
.+ .+.+++.|+.+|++.+...+....++.|++|+ ++|+...+.... ...+|..+++.+++.+... .+ ||+.|.
T Consensus 90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 168 (338)
T COG0477 90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRAAFL 168 (338)
T ss_pred ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHH
Confidence 66 89999999999999999999999999999987 678888888888 5888888888777766654 34 899776
Q ss_pred HhHHHHHHH
Q 011308 213 VATIPAAFL 221 (489)
Q Consensus 213 ~~~~~~~~~ 221 (489)
.........
T Consensus 169 ~~~~~~~~~ 177 (338)
T COG0477 169 LAALLGLLL 177 (338)
T ss_pred HHHHHHHHH
Confidence 665554433
No 224
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.7e-09 Score=96.64 Aligned_cols=141 Identities=12% Similarity=0.075 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308 326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS 405 (489)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (489)
......+..++.+++.|.+.||+|+|..++.|+..+..+.+++++.... +..+++-.+=+.+.+... ....
T Consensus 111 LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy--------~~l~vAR~LQgvgsA~~~-tsgl 181 (464)
T KOG3764|consen 111 LFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSY--------PMLFVARSLQGVGSAFAD-TSGL 181 (464)
T ss_pred HHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchh--------HHHHHHHHHhhhhHHHHH-hhhH
Confidence 5556678899999999999999999999999999999998888876543 234555555555544333 3445
Q ss_pred hhhcccCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCC
Q 011308 406 LLLSEIFPNRI-RAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKG 475 (489)
Q Consensus 406 ~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (489)
+++++.+|+++ |++++|+.-.+..+|-.+||+++|.+++..|+..+|++++.++++-..+-++..+.++.
T Consensus 182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence 67889988766 69999999999999999999999999999999999999999999988887776655443
No 225
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.96 E-value=9.9e-09 Score=102.83 Aligned_cols=171 Identities=17% Similarity=-0.001 Sum_probs=118.4
Q ss_pred HHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308 297 FALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAAT 373 (489)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (489)
..+............++.+-++.+.+... +.....++..++.++.+++.||.+||+.+..+.++.+++.++.++...
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf 120 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF 120 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence 33333333455555666666777776655 556677888999999999999999999999999999999888876641
Q ss_pred cccC-----------------------C-----------------C--c-chhHHHHHHHHHHHHHhcCCCcchhhhhcc
Q 011308 374 SFVS-----------------------S-----------------S--G-ALSLSLGGMLLFVLTFSLGAGPVPSLLLSE 410 (489)
Q Consensus 374 ~~~~-----------------------~-----------------~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (489)
.... . . . .....++.-++.+.+.+ ...+...+++.|
T Consensus 121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~~~~~i~d 199 (633)
T TIGR00805 121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPLGISYIDD 199 (633)
T ss_pred hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhcCchhhhc
Confidence 1000 0 0 0 11222333444333332 234566779999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------ccchhhHHHHHHHHHHHHHhhh
Q 011308 411 IFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL----------------------GPLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 411 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------------g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
.+|+++|+...|+.+....+|..+|+.+++.+.+.+ +|+..|++.+++.++..+.+++
T Consensus 200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887643 1555677777777666554443
No 226
>PRK09848 glucuronide transporter; Provisional
Probab=98.95 E-value=1e-08 Score=99.54 Aligned_cols=129 Identities=16% Similarity=0.041 Sum_probs=99.3
Q ss_pred hhhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh--hHHHHHHHHH
Q 011308 73 TLESISL-DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK--NLWGMLLGRL 149 (489)
Q Consensus 73 ~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~ 149 (489)
..|.+.+ .+|.+.... ++......++..++.++++++.||+|+|+++..+.++..++.++..+.+ +++.+++..+
T Consensus 250 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 327 (448)
T PRK09848 250 SSLFYVRYVLNDTGLFT--VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALA 327 (448)
T ss_pred hheeeEeeecCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 3444433 455443222 4444444677788999999999999999999999998888877776643 6777777888
Q ss_pred HHhhcccchhhhHHHHHHhcCCcc-------chhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 011308 150 FVGTGMGIGPAVAALYVSEVSPAY-------VRGAYGSSTQIAACLGILVALFVGLPAKEI 203 (489)
Q Consensus 150 l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~ 203 (489)
+.|+|.+...+...++..|..|.+ ++|...++.+....+|..+++.+.+.+.+.
T Consensus 328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988754 358889999999999999998888776543
No 227
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.93 E-value=3.6e-08 Score=89.39 Aligned_cols=162 Identities=15% Similarity=-0.043 Sum_probs=118.5
Q ss_pred cchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308 303 SGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS 379 (489)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
..........+.+-++.+++.++ +..+..+.+.+.++..|.+.||+|.|+....+.++..+-++.+.+.....
T Consensus 28 ~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~---- 103 (417)
T COG2223 28 MVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP---- 103 (417)
T ss_pred HHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC----
Confidence 34444444455555778888877 44455677778889999999999999999999888888877777765432
Q ss_pred cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhhHHHH
Q 011308 380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG---PLILYTIFG 456 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~~~ 456 (489)
+.+..++...+.+.+. +.......++++-+|++++|.++|++. .+|+|..+...+.+.+....| |+....+..
T Consensus 104 -~~~~ll~~gll~G~~G--asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~ 179 (417)
T COG2223 104 -STWQLLVIGLLLGLAG--ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYV 179 (417)
T ss_pred -chHHHHHHHHHHhccc--ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1133333333333332 233455557899999999999999999 999999999999999999888 888888888
Q ss_pred HHHHHHHHHhhhcccC
Q 011308 457 SFCFLAVIYVKRNVME 472 (489)
Q Consensus 457 ~~~~~~~~~~~~~~~~ 472 (489)
...++..+..++..++
T Consensus 180 ~~l~v~~v~~~~~~~d 195 (417)
T COG2223 180 VALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8777777776665543
No 228
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.93 E-value=1.3e-08 Score=98.19 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=117.8
Q ss_pred HHHHhhhhccccccccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH
Q 011308 56 AIISSFLFGYHLGVVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM 134 (489)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~ 134 (489)
+.+..++............+.+.++ ++.+ +.. +.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++
T Consensus 230 l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~--~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~ 306 (428)
T PF13347_consen 230 LLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLI--SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLL 306 (428)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHH
Confidence 3344445555555556566666555 3433 333 78888999999999999999999999999999999999999999
Q ss_pred Hhhhh--hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCc-------cchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308 135 SAITK--NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA-------YVRGAYGSSTQIAACLGILVALFVGLPAKEIL 204 (489)
Q Consensus 135 ~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 204 (489)
..+.+ |.+.+++.-++.|++.+...+...++++|..+. ++.|...+..+...-+|..+++.+.+.+.+..
T Consensus 307 ~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 307 LFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred HHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 88886 999999999999999999999999999999873 33578889999999999999988877765443
No 229
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.93 E-value=1.4e-09 Score=95.87 Aligned_cols=131 Identities=17% Similarity=0.149 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhH
Q 011308 99 GGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAY 178 (489)
Q Consensus 99 ~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~ 178 (489)
+.-.-|.++.+.+.||+|||+.+..+.+++++..++...+.+-..+.+.-+..-++..+.+.+.+.|..|.+|..-|+..
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg 471 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG 471 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence 44456888999999999999999999999999998887765433333333333333455566778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCCh
Q 011308 179 GSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESP 232 (489)
Q Consensus 179 ~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~ 232 (489)
.|.-+...-+|.++.|+++ ...+..- ..+..+.+...++..+...++|-.+
T Consensus 472 vGtcSsmaRIggI~~p~iA-~~~e~s~--sl~i~vy~~~~ilagIavcffPiEt 522 (528)
T KOG0253|consen 472 VGTCSSMARIGGIFSPVIA-MRAELST--SLPIFVYGALFILAGIAVCFFPIET 522 (528)
T ss_pred hhhhhhHHhhhhhhhhHHH-HHhccce--eehHHHHHHHHHHHHHHheeeeecc
Confidence 9999999999999999999 3333222 3444555666666666666666443
No 230
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.92 E-value=1.5e-07 Score=93.67 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=118.0
Q ss_pred hhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHHHHHHHHHhhhhh--------HHH
Q 011308 73 TLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPMIIGASMSAITKN--------LWG 143 (489)
Q Consensus 73 ~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~--------~~~ 143 (489)
....+.+.+|.+.+.. ..+...+....-+..+++|.++|+ +||++.+.++.++..+|.++.+++.. ...
T Consensus 10 LvlYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~ 87 (654)
T TIGR00926 10 LVLYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL 87 (654)
T ss_pred HHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence 3444555677776666 677777777778889999999995 79999999999999999888776421 233
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHhcCCcc---chhhHHHHHHHHHHHHHHHHHHhhcccccc-------cchHHHHHHH
Q 011308 144 MLLGRLFVGTGMGIGPAVAALYVSEVSPAY---VRGAYGSSTQIAACLGILVALFVGLPAKEI-------LGWWRICFWV 213 (489)
Q Consensus 144 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-------~~~Wr~~f~~ 213 (489)
.+++-.+..+|.|+.-|...+...|.++++ +|...+.++..+.++|..+++.+..++.+. .+ |...|.+
T Consensus 88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~i 166 (654)
T TIGR00926 88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAFGV 166 (654)
T ss_pred HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHHH
Confidence 566778888999999999999999999754 366788888999999999999888877633 25 8999999
Q ss_pred hHHHHHHHHHHh
Q 011308 214 ATIPAAFLALFM 225 (489)
Q Consensus 214 ~~~~~~~~~~~~ 225 (489)
.++..++..+..
T Consensus 167 ~~i~m~ia~lvf 178 (654)
T TIGR00926 167 PAILMILALIVF 178 (654)
T ss_pred HHHHHHHHHHHH
Confidence 888777665553
No 231
>PRK10133 L-fucose transporter; Provisional
Probab=98.91 E-value=6.6e-08 Score=93.18 Aligned_cols=134 Identities=12% Similarity=0.018 Sum_probs=95.3
Q ss_pred chhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308 304 GINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG 380 (489)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
.......+.|.+.++.+.+... ......++..++.+..|++.||+|||+.+..+..+..++.+++..... .+
T Consensus 41 ~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-----a~ 115 (438)
T PRK10133 41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----IM 115 (438)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-----cC
Confidence 3455666777777778887665 555667888999999999999999999999999988888766532111 12
Q ss_pred chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~ 443 (489)
+.+..+....+.+.+.+.... ....++.|..|++++...+++.+....+|..+++.+.+.+.
T Consensus 116 ~~~~ll~~r~l~G~g~g~~~~-~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 116 NYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344555555555554433 33445667777666667899999999999999998877654
No 232
>PTZ00207 hypothetical protein; Provisional
Probab=98.89 E-value=5.9e-08 Score=94.80 Aligned_cols=182 Identities=12% Similarity=0.046 Sum_probs=113.3
Q ss_pred ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHH--HHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308 285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANL--SGSIIAMILMDKLGRRVLLLGSFLGMA 362 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~d~~~~~~~~~~~~~~~~ 362 (489)
++.|..+.+....... .+....+..+.+.+.++.+.+......+..++.. ...+..|++.||+|+|+++..+.++..
T Consensus 24 ~~Rw~~lva~~~~~~~-~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~ 102 (591)
T PTZ00207 24 PRRFALLVLGAFCSIC-TSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC 102 (591)
T ss_pred cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 4444444433333322 2233455667778888888887775544443322 344578999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL 442 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l 442 (489)
++.++.++...... ..+.+...+...+.+.+.+... +.....+.+.+| ++||.+.|+......+|+.+.+.+...+
T Consensus 103 iG~ll~ala~~~~i--~~s~~~l~l~r~l~G~G~~~~~-~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 103 LGTLLFALTFQEVI--EGSVVRLSVYNGLMTLGCMLFD-LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHhcccc--cCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888877532111 1233333344444444433222 233345677887 6799999999999999998655555554
Q ss_pred HHHhccchhhHHHHHHHHHHHHHhhhcccC
Q 011308 443 LEQLGPLILYTIFGSFCFLAVIYVKRNVME 472 (489)
Q Consensus 443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (489)
.. .++...|++.+++.++..++.+.+.+.
T Consensus 179 ~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~ 207 (591)
T PTZ00207 179 FS-DNTSAYFFFLMSFALVVGILAIVFMRL 207 (591)
T ss_pred HH-HhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence 44 346667777777777766655554433
No 233
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=98.88 E-value=1.2e-07 Score=83.22 Aligned_cols=360 Identities=11% Similarity=0.070 Sum_probs=214.3
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchh
Q 011308 80 DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGP 159 (489)
Q Consensus 80 ~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~ 159 (489)
+.+++..+.. .-+.-...-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+=+.-++.|...+ ..
T Consensus 35 ~~NlT~~~l~-~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aE 112 (433)
T KOG3810|consen 35 DKNLTEDQLT-NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AE 112 (433)
T ss_pred CCCccHHHHh-cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HH
Confidence 4455544442 223334445556666677789999988999988888888888888889999999999999998755 44
Q ss_pred hhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch-HHHHHHHhHHHHHHHHHHhhcccCChhHHHhc
Q 011308 160 AVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW-WRICFWVATIPAAFLALFMEFCAESPHWLFKR 238 (489)
Q Consensus 160 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~ 238 (489)
.+-++++-+..+++++.++.+...++.-.|...|..++-.+.+.... ....=.+......+..+...++|..+|-+.-+
T Consensus 113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~ 192 (433)
T KOG3810|consen 113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH 192 (433)
T ss_pred HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence 67788898899999999999999999988988888888877765430 22222333333333344456677666443333
Q ss_pred CChHHHHHHHHHHhCCCCchHHHHHHhhhhh-------ccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHh
Q 011308 239 GRGAEAEAELERLFGGLHVKYSMAELSKSER-------GDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYF 311 (489)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (489)
.+.++.. .. +.++...+.+ ....-...+.+..++|... ...+++....+++.....|
T Consensus 193 ~~~~~~~--v~----------~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll----~WSlWwAl~scg~~QV~nY 256 (433)
T KOG3810|consen 193 RLEDKIS--VG----------DLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLL----KWSLWWALASCGYYQVTNY 256 (433)
T ss_pred cccccce--ec----------cchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhh----hhHHHHHHhhchhHHHHHH
Confidence 3222111 00 0011111000 0011122344455555443 2333444444566777777
Q ss_pred HHHHHHhcCCCCC-c----hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHH
Q 011308 312 SSTVFKNAGVPSD-S----GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSL 386 (489)
Q Consensus 312 ~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
.+.+.+...-+.. . .-....+.+.++.+..|++.-+..|..-+..+......+.+++.. ....++|+..
T Consensus 257 ~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m------~~t~~Iw~~Y 330 (433)
T KOG3810|consen 257 TQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM------AQTQHIWVCY 330 (433)
T ss_pred HHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh------hcccceehhh
Confidence 7777776532221 1 334455666777778888755555543333332222222222211 1245577788
Q ss_pred HHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cchhhHHH
Q 011308 387 GGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-----------PLILYTIF 455 (489)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-----------~~~~~~~~ 455 (489)
+..+++...+.+....... .+++....+.-|..+|+..++.-+-..+...+. .|..| +..-|.+.
T Consensus 331 a~yvlfr~~y~l~itiA~~-~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~v~ 406 (433)
T KOG3810|consen 331 AGYVLFRVIYQLTITIATF-QIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFIVL 406 (433)
T ss_pred hhHHHHHhhHhhhhhHHHH-HHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHHHH
Confidence 8888888888766543333 444555668889999988888776666655543 33222 44567788
Q ss_pred HHHHHHHHHHhh
Q 011308 456 GSFCFLAVIYVK 467 (489)
Q Consensus 456 ~~~~~~~~~~~~ 467 (489)
+++.+++..+.+
T Consensus 407 ~~i~~~~~~~~~ 418 (433)
T KOG3810|consen 407 GVIFLIGFGIEY 418 (433)
T ss_pred HHHHHHHHHHHH
Confidence 888777765543
No 234
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.87 E-value=1.8e-07 Score=87.36 Aligned_cols=136 Identities=13% Similarity=0.056 Sum_probs=106.1
Q ss_pred hhHHHHhHHHHHHhcCCCCCc----hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308 305 INAVFYFSSTVFKNAGVPSDS----GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG 380 (489)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
=...++..+.+.++.+++... +...+..+..+..+.+|++.||+|.|+++..+.+.-.+..+++.+....
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl------ 115 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV------ 115 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 345566677777777877655 5556667888999999999999999999999988888888877775432
Q ss_pred chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 011308 381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLIL 451 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 451 (489)
....+.-++++.+-+... ....++...+|+++|+++.|+.+....+|.++++++.+. ...+||+..
T Consensus 116 --~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y 181 (511)
T TIGR00806 116 --WHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY 181 (511)
T ss_pred --HHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence 335555666666655444 555688899999999999999999999999999999998 556776643
No 235
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.86 E-value=5.1e-08 Score=95.22 Aligned_cols=134 Identities=9% Similarity=0.039 Sum_probs=98.5
Q ss_pred cccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhh-----hhhHHH
Q 011308 69 VVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI-----TKNLWG 143 (489)
Q Consensus 69 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~ 143 (489)
......+.+.+...-+.+.. +++.+...++..++.+++++++||+|+|+.+..+.++..++.+...+ ..+.+.
T Consensus 249 ~~~~~~~y~~~y~~~~~~~~--~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (473)
T PRK10429 249 IINGFAIYYFTYVIGDADLF--PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALL 326 (473)
T ss_pred HHhhheeeEEEEECCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence 33334444444432222333 67777777888999999999999999999999888776666555432 345677
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHhcCC-------ccchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308 144 MLLGRLFVGTGMGIGPAVAALYVSEVSP-------AYVRGAYGSSTQIAACLGILVALFVGLPAKEIL 204 (489)
Q Consensus 144 l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 204 (489)
+++.-++.|++.+...+...+++.|..+ +++.|..++......-+|..+++.+.+++.+..
T Consensus 327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~ 394 (473)
T PRK10429 327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI 394 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7778888999999999999999999966 233456889988888899999988887776533
No 236
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.84 E-value=9.9e-08 Score=91.23 Aligned_cols=169 Identities=14% Similarity=0.050 Sum_probs=109.7
Q ss_pred hhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHh----hhCCchhHHHH-HHHHHHHHHHHHHHhhccc
Q 011308 305 INAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMD----KLGRRVLLLGS-FLGMAIAMGVQAIAATSFV 376 (489)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 376 (489)
+.....+++.+++..|.+... ......+.+++..++.|+++| |+|||+..+.. .+...+++.++.+......
T Consensus 20 ~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~ 99 (477)
T TIGR01301 20 WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGH 99 (477)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 445555666677888887765 444556778889999999999 59999987764 5555555555544332110
Q ss_pred ---C---CCcch---hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 011308 377 ---S---SSGAL---SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIR--AKAMAVCMAVHWVINFFVGLLFLRL--L 443 (489)
Q Consensus 377 ---~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~~~~~~~g~l--~ 443 (489)
. ..... +..+..+.+..+.......| ..+++.|..|+++| +.+.++.+...++|+.+++.+.+.. .
T Consensus 100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~ 178 (477)
T TIGR01301 100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY 178 (477)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 0 00001 12222233333333333333 35689999998755 6899999999999999999988864 2
Q ss_pred HHh-------------ccchhhHHHHHHHHHHHHHhhhcccCCC
Q 011308 444 EQL-------------GPLILYTIFGSFCFLAVIYVKRNVMETK 474 (489)
Q Consensus 444 ~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (489)
+.. +.+..|.+.+++.+++.++..+..+|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 222 3566788888888888877777777754
No 237
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.82 E-value=7.8e-08 Score=81.18 Aligned_cols=357 Identities=17% Similarity=0.186 Sum_probs=179.3
Q ss_pred cccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 011308 69 VVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGR 148 (489)
Q Consensus 69 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 148 (489)
..+|..-.+-+.++....++ |.+.-..+-...+...+.|.++|+-|||+.-+.-++...+++ +.-.++.|-.++++|
T Consensus 55 LQgPYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR 131 (454)
T KOG4332|consen 55 LQGPYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGR 131 (454)
T ss_pred hcCceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehh
Confidence 34555556667778887777 776666666677888899999999999997544444333332 234578899999999
Q ss_pred HHHhhcccchhhhHHHH-HHhcCCccchhh---HHH-HHH----HHHHHHHHHHHHhhcccccccch-HHHHHHHhHHHH
Q 011308 149 LFVGTGMGIGPAVAALY-VSEVSPAYVRGA---YGS-STQ----IAACLGILVALFVGLPAKEILGW-WRICFWVATIPA 218 (489)
Q Consensus 149 ~l~G~~~~~~~~~~~~~-i~~~~~~~~r~~---~~~-~~~----~~~~~G~~i~~~~~~~l~~~~~~-Wr~~f~~~~~~~ 218 (489)
++-|+..+..+++-.++ +.|.-++ |+. ..+ .+. .+..+-.+++.+.+-.+.+..+- --.+|-..+...
T Consensus 132 ~LGGiaTsLLFSaFEsWliaEHnek--r~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfL 209 (454)
T KOG4332|consen 132 VLGGIATSLLFSAFESWLIAEHNEK--RGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFL 209 (454)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhc--cCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 99999999988887765 5665432 321 111 111 12222233333334344433220 122333322222
Q ss_pred HHH-HHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHH
Q 011308 219 AFL-ALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLF 297 (489)
Q Consensus 219 ~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (489)
.+. ++..- .|-..-+++.+.++.+... +...+.+..+++. .+...+.
T Consensus 210 aigmAvil~------~W~ENygdps~~kdlltqf-----------------------~gaa~aiaSD~ki---~LLG~iq 257 (454)
T KOG4332|consen 210 AIGMAVILS------SWSENYGDPSENKDLLTQF-----------------------KGAARAIASDEKI---ALLGAIQ 257 (454)
T ss_pred HHHHHHHHh------hhhhccCChhhhHHHHHHh-----------------------hHhHHHHhcchHH---HHHHHHH
Confidence 121 11110 1222223332222211111 0111122222221 1112222
Q ss_pred HhhhhcchhHHHHhHHHHH-HhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCc--hhHHHHHHHHHHHHHHHHHHhhc
Q 011308 298 ALQQLSGINAVFYFSSTVF-KNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRR--VLLLGSFLGMAIAMGVQAIAATS 374 (489)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 374 (489)
.......+.....|.|.+- ++.+.+.+.+...+.+..++|+-+..++..|-..| ..+.+.++.....+.+......
T Consensus 258 sLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~- 336 (454)
T KOG4332|consen 258 SLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS- 336 (454)
T ss_pred HHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-
Confidence 2222222222333333321 12344555566666677777777776666554332 3444444444444433333322
Q ss_pred ccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhccchhh
Q 011308 375 FVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE--QLGPLILY 452 (489)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~--~~g~~~~~ 452 (489)
..+...++...++.++++-...+..+..+. -+-.+..|++.|++.+-....--++...++-.. .-.+ ..+.+..|
T Consensus 337 vsP~kes~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNfFRvPLnifvClvLyn--lh~~~~p~~tr~mf 413 (454)
T KOG4332|consen 337 VSPSKESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN--LHVDAFPTTTRNMF 413 (454)
T ss_pred cCCCcCCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhheechhhHhhhhhhee--cccccCccccchhh
Confidence 333344555567777777777776655444 366777898888876655444333322222111 0011 12345677
Q ss_pred HHHHHHHHHHHHHh
Q 011308 453 TIFGSFCFLAVIYV 466 (489)
Q Consensus 453 ~~~~~~~~~~~~~~ 466 (489)
.+.++...++.+..
T Consensus 414 ~icS~~~~~a~i~~ 427 (454)
T KOG4332|consen 414 GICSAFLFVASILQ 427 (454)
T ss_pred hhhHHHHHHHHHHH
Confidence 77777766665443
No 238
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.77 E-value=3.2e-07 Score=81.53 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=122.5
Q ss_pred ccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHHHHHHHHHhhhhhHHHHHH
Q 011308 68 GVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPMIIGASMSAITKNLWGMLL 146 (489)
Q Consensus 68 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~ 146 (489)
+....-+|.+..|-|+|..+. |++.+...+.....++..-.+++| -++|+..+....++.++.+.+.+.+.-..+..
T Consensus 225 Y~~~~WLP~ili~~G~sa~~a--G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw 302 (395)
T COG2807 225 YIVIGWLPAILIDRGLSAAEA--GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW 302 (395)
T ss_pred HHHHHHHHHHHHHcCCCHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 334456899999999998888 999999999999999999999995 45677777778888888887777664433333
Q ss_pred HHHHHhhcccchhhhHHHHHHhcCCcc-chhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308 147 GRLFVGTGMGIGPAVAALYVSEVSPAY-VRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF 224 (489)
Q Consensus 147 ~r~l~G~~~~~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~ 224 (489)
-++.|+|.|..++.+...+.+..++. +-++..++.+....+=..+||.+.|++-|..|+|+...+..+...++..+.
T Consensus 303 -~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~ 380 (395)
T COG2807 303 -ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIF 380 (395)
T ss_pred -HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999987654 445666666666666677899999999999988999988877776665554
No 239
>PRK09669 putative symporter YagG; Provisional
Probab=98.75 E-value=1.1e-07 Score=92.24 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHhhcccchhhhHHHHHHh
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI--TKNLWGMLLGRLFVGTGMGIGPAVAALYVSE 168 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 168 (489)
+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...++++|
T Consensus 267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad 346 (444)
T PRK09669 267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD 346 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666677788888999999999999999999888766654433222 3577778888899999999999999999999
Q ss_pred cCCcc-------chhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 169 VSPAY-------VRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 169 ~~~~~-------~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
..+.+ +.|...+..+....+|..+|+.+++.+.+..|
T Consensus 347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88632 23567788888889999999988887765443
No 240
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.74 E-value=2.3e-08 Score=69.43 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=74.6
Q ss_pred hccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHH
Q 011308 63 FGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLW 142 (489)
Q Consensus 63 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 142 (489)
.++.+..+.|.+|.+++|.++|.++. |++.+.+++||.+|.+...++.++..+++.+..+++...+..+.+++.++++
T Consensus 4 mGigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred hhhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 35677889999999999999999888 9999999999999999999999999999999999999999999999998877
Q ss_pred HHH
Q 011308 143 GML 145 (489)
Q Consensus 143 ~l~ 145 (489)
.+.
T Consensus 82 ~w~ 84 (85)
T PF06779_consen 82 LWS 84 (85)
T ss_pred HHh
Confidence 653
No 241
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.70 E-value=4.1e-08 Score=91.13 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=114.6
Q ss_pred hhhhcchhHHHHhHHHHHHh-cCCCCCchhHHH---HHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308 299 LQQLSGINAVFYFSSTVFKN-AGVPSDSGNICV---GIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAAT 373 (489)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (489)
+.+++.-..+.+|+..-+.+ .|++......++ +...-...+++||++|| +|+|+.+.++.++..++.+++.....
T Consensus 35 FsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~ 114 (498)
T COG3104 35 FSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV 114 (498)
T ss_pred HhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc
Confidence 33333334444444443332 335555433333 33334677889999999 59999999999999999988876530
Q ss_pred cccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 011308 374 SFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR--IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLIL 451 (489)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 451 (489)
.......+.+.+...+.+. .=+....++.|++|++ +|..++++.....++|+.++|.+.+++.++.||...
T Consensus 115 ------~~~~gl~i~L~~I~iG~Gl-~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~g 187 (498)
T COG3104 115 ------SGPGGLYIGLALIIVGTGL-FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVG 187 (498)
T ss_pred ------ccccHHHHHHHHHHhcccc-ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHH
Confidence 1112244445454444432 3356666888888753 378889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhccc
Q 011308 452 YTIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~ 471 (489)
|...++-..++.+..+...+
T Consensus 188 F~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 188 FGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHHHHHHHccc
Confidence 99998888888777765543
No 242
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.68 E-value=1.2e-07 Score=93.99 Aligned_cols=135 Identities=22% Similarity=0.099 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308 326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS 405 (489)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (489)
...+..++.++|.++.|.++||+|||+++..+.++..++.+..++..+. +...+.-++.+++ ..+......
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~--------~~~~~~Rfl~G~~-~~~~~~~~~ 193 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNY--------WMFLIFRFLSGFF-GSGPLTVGF 193 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcH--------HHHHHHHHHHHhh-ccchhHHhH
Confidence 5566778899999999999999999999999999999888777776543 2233333333333 334455667
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308 406 LLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMET 473 (489)
Q Consensus 406 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (489)
.+..|.+++++|+.+..+ ......++.+++...+++.. +|++.+++.+....+..++ ++..+|.
T Consensus 194 ~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es 257 (521)
T KOG0255|consen 194 GLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES 257 (521)
T ss_pred hhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence 789999999999999999 88888999999999998887 7888888888877776655 4444454
No 243
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=98.68 E-value=1.1e-06 Score=81.53 Aligned_cols=144 Identities=14% Similarity=0.034 Sum_probs=84.1
Q ss_pred HHHHHHhhhhccccccccchhhhhhhc--ccccccchHHHHHHHHHHHHHHHHHHHHHHhhc-----ccCchhHhhhh-h
Q 011308 54 LVAIISSFLFGYHLGVVNETLESISLD--LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD-----GIGRRRAFQLC-A 125 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~~~-~ 125 (489)
.++.+.+++.+.-.+......|.+.++ -+.+.++. |. .|....-+. .-++|.++.| |+||||..++= -
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~~-fSla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q 78 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--AI-FSLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQ 78 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCCChhHh--ee-eeeeechhH-HHHhhhhhhhhhcccccCCcchhhhHHH
Confidence 355667788888887776778888887 56776665 32 222222222 2456677766 89999876543 2
Q ss_pred HHHHHHHHHHhhhh----------------------hH--HHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHH
Q 011308 126 LPMIIGASMSAITK----------------------NL--WGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSS 181 (489)
Q Consensus 126 ~~~~i~~~~~~~~~----------------------~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~ 181 (489)
.+.++..+..+..- +. ..+...-++.=+-.+.--.+.-.+.-.+..+++++.+...
T Consensus 79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc 158 (544)
T PF13000_consen 79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC 158 (544)
T ss_pred HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence 33333333222111 11 1222222222222333344455566667788899999998
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 011308 182 TQIAACLGILVALFVGLPAK 201 (489)
Q Consensus 182 ~~~~~~~G~~i~~~~~~~l~ 201 (489)
...+.+.|..++..+--.+.
T Consensus 159 qtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 159 QTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHhHhhhhHHHHHHHHHhhC
Confidence 88899999888877654444
No 244
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.67 E-value=1.8e-06 Score=79.69 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS 170 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 170 (489)
|.+.-+-.+...+..+.+-++.+|+..+.-...+.+++.++.++.++++|.+.=+++-++.+++.|........+.. .+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y 140 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY 140 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence 44555555666777778888899988776677778889999999999999999889999999999988887777644 55
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHhhcccccccch-HHHHHHHhHHHHHHHHHHhhc-ccC
Q 011308 171 PAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW-WRICFWVATIPAAFLALFMEF-CAE 230 (489)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-Wr~~f~~~~~~~~~~~~~~~~-~~e 230 (489)
++ ...+-++.|.+.+.++|+..-..+.+ .+. -|..+.+...+.++..+..++ +|.
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 43 34677777777777777776555554 331 366777666555444444444 443
No 245
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.65 E-value=2e-07 Score=90.52 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=107.9
Q ss_pred hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh----------hhHHHHHHHH
Q 011308 79 LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT----------KNLWGMLLGR 148 (489)
Q Consensus 79 ~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----------~~~~~l~~~r 148 (489)
+++|.++.+. |++.....++..++....+++.+|++.|+++.++.++.+++.+..... ++.+.+...-
T Consensus 281 ~~lG~s~~~~--G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 281 QCLPGGPSFS--GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred ccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 5678888877 999999999999999999999999999999999999999887654311 3334455567
Q ss_pred HHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 149 LFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
++.+++.+........++.+..|+++++...++.+...++|..+++.+++.+.+..|
T Consensus 359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 888999899899999999999999999999999999999999999999998887655
No 246
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.64 E-value=3e-07 Score=87.88 Aligned_cols=139 Identities=21% Similarity=0.063 Sum_probs=113.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308 326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS 405 (489)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (489)
+......+.+++.+.+|++.||+|-|+++..+.++.+++.++..+..... .+.+++.-++-+.+.+... |...
T Consensus 78 i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~------~~~~~~~R~lqGl~~g~~~-pa~~ 150 (466)
T KOG2532|consen 78 IFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG------FYLLLVLRFLQGLGQGVLF-PAIG 150 (466)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc------chhhHHHHHHhHHHHhHHH-hhhh
Confidence 55667789999999999999999999999999998888888777765432 1234555555555555443 4555
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHhhhccc
Q 011308 406 LLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ-LGPLILYTIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 406 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
.+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||...|++.+++.++..++.+++..
T Consensus 151 ~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 151 SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 6788889999999999999999999999999999999998 99999999999999888777665544
No 247
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.62 E-value=6.1e-10 Score=108.40 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=103.4
Q ss_pred ccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh--h---hh---
Q 011308 68 GVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA--I---TK--- 139 (489)
Q Consensus 68 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~---~~--- 139 (489)
.......+.+.++.+.+.. . .......+...++.++...+.||+|||++++.+..+.+++.+..+ . .+
T Consensus 270 ~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (451)
T PF00083_consen 270 NFIFYYSPSIFENAGISNS-F---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSS 345 (451)
T ss_pred ccccccccccccccccccc-c---cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344456777777777665 2 112233344456666777999999999999999988888877764 1 11
Q ss_pred --hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHH
Q 011308 140 --NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIP 217 (489)
Q Consensus 140 --~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~ 217 (489)
+...+.......-.......+....+..|.+|.+.|+++.++......++..+++.+...+.+..+. ...|++.+..
T Consensus 346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~~~~i~~~~ 424 (451)
T PF00083_consen 346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGG-WGVFLIFAGV 424 (451)
T ss_pred ccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccchhhHHH
Confidence 1222222221111111233456668889999999999999999998888888888888777766542 3445555554
Q ss_pred HHHHH-HHhhcccCCh
Q 011308 218 AAFLA-LFMEFCAESP 232 (489)
Q Consensus 218 ~~~~~-~~~~~~~e~~ 232 (489)
.++.. +..+++||+.
T Consensus 425 ~~i~~i~~~~~lpET~ 440 (451)
T PF00083_consen 425 CLIAIIFVYFFLPETK 440 (451)
T ss_pred HHHHHhheeEEEeeCC
Confidence 44444 4456689985
No 248
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.62 E-value=1.4e-06 Score=81.90 Aligned_cols=141 Identities=14% Similarity=0.180 Sum_probs=106.3
Q ss_pred hhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh-
Q 011308 61 FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK- 139 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~- 139 (489)
++........+.....+. ++.++.++...++.......+..++.+++.++++|+|+|+++..+.++..++.++.-+.+
T Consensus 246 l~~~~~~~i~~s~~~yy~-~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~ 324 (467)
T COG2211 246 LLLFIAFNIRGSIMVYYV-TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA 324 (467)
T ss_pred HHHHHHHHHHhhhhheeE-EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333333333444444333 335555666557778888888888899999999999999999999999999999888765
Q ss_pred -hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCc-------cchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308 140 -NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA-------YVRGAYGSSTQIAACLGILVALFVGLPAKE 202 (489)
Q Consensus 140 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 202 (489)
+.+.+++..++.++|.+...+...++++|..+. ++-|...+......=+|..++..+.+++..
T Consensus 325 ~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 325 GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888899999999999999999999998763 223566677777777777777766665554
No 249
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.60 E-value=6.5e-07 Score=88.35 Aligned_cols=138 Identities=18% Similarity=0.114 Sum_probs=108.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcch
Q 011308 325 SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVP 404 (489)
Q Consensus 325 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (489)
.......++..++.++.|+++|++|||+.+..+.+...++.++..+..+ ......+-++.+.+.+.... ..
T Consensus 93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~--------~~~l~~GR~l~G~g~G~~~~-~~ 163 (513)
T KOG0254|consen 93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS--------WYQLIVGRILTGLGVGGASV-LA 163 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHhccchhhhhh-cc
Confidence 4666777899999999999999999999999999999999998888753 34466667777766665543 44
Q ss_pred hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308 405 SLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL--GPLILYTIFGSFCFLAVIYVKRNVMET 473 (489)
Q Consensus 405 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (489)
..+.+|..|++.||...+..+....+|..++ .+.+....+. +|+..+.+..+.+++..+. .++.||+
T Consensus 164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 164 PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 5589999999999999999999999877777 6666665543 7887777777777766666 5556654
No 250
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.60 E-value=7.4e-08 Score=89.68 Aligned_cols=163 Identities=21% Similarity=0.171 Sum_probs=136.6
Q ss_pred hhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhH
Q 011308 62 LFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNL 141 (489)
Q Consensus 62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~ 141 (489)
+.+...+.+...+-.-.||.+-.+.-. |........|-.+.-++.+++..++|+-+++..++....+=.+..+..+|.
T Consensus 382 ~mG~g~~lv~tFLfWHled~~~~~~Lf--Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~ 459 (618)
T KOG3762|consen 382 VMGAGVGLVFTFLFWHLEDLGGIKTLF--GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNP 459 (618)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceee--eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCc
Confidence 334444444444444567777554444 877778888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHH-HHHHHHHHHHhhcccccccchHHHHHHHhHHHHHH
Q 011308 142 WGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIA-ACLGILVALFVGLPAKEILGWWRICFWVATIPAAF 220 (489)
Q Consensus 142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~ 220 (489)
|+.+...+++|+..+..+.++.+|+++..|++-|..+.++.+.. .++|-.+|.++||.+.+..+ =|..|.+.++.+++
T Consensus 460 W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~ 538 (618)
T KOG3762|consen 460 WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLV 538 (618)
T ss_pred hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988765 58899999999999999998 59999998888877
Q ss_pred HHHHhhc
Q 011308 221 LALFMEF 227 (489)
Q Consensus 221 ~~~~~~~ 227 (489)
.+++...
T Consensus 539 ~l~~~~~ 545 (618)
T KOG3762|consen 539 TLALFIS 545 (618)
T ss_pred HHHHHHH
Confidence 6655433
No 251
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.57 E-value=4e-06 Score=75.93 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=106.5
Q ss_pred HhHHHHHHhcCCCC---CchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHH
Q 011308 310 YFSSTVFKNAGVPS---DSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSL 386 (489)
Q Consensus 310 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
...|.+.+....+. +.+......+..+.++..+++.+|+|.|+-++.++.++++++.++.-..... .....+
T Consensus 34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~-----~y~~FL 108 (422)
T COG0738 34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK-----SYGFFL 108 (422)
T ss_pred hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh-----hHHHHH
Confidence 34444444444443 3366666778889999999999999999999999999999988876443321 112223
Q ss_pred HHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hc
Q 011308 387 GGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ-------------------LG 447 (489)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------------------~g 447 (489)
..+.+.+.+.+.. ......++..+.|++....-+.+.+.++.+|++++|.+++.+..+ ..
T Consensus 109 ~~lFila~Gi~~L-etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~ 187 (422)
T COG0738 109 VALFILASGIGLL-ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASS 187 (422)
T ss_pred HHHHHHHhhhHHH-HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence 3333333333322 234455788888888889999999999999999999999998872 12
Q ss_pred cchhhHHHHHHHHHHHHHhhh
Q 011308 448 PLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~ 468 (489)
++.+|...+.+.++..+....
T Consensus 188 v~~pYl~~~~~lvll~v~~~~ 208 (422)
T COG0738 188 VQFPYLILAGLLVLLAVLILL 208 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHh
Confidence 567788888777776665543
No 252
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.53 E-value=5e-07 Score=86.66 Aligned_cols=140 Identities=18% Similarity=0.075 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308 326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS 405 (489)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (489)
....+.++.+++.+.++.+.||++..+.+....++..+..++.....+ .+..++.-++.+..-+.+ .|...
T Consensus 86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s--------~~~~ialr~llGl~es~~-wP~~~ 156 (495)
T KOG2533|consen 86 LDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS--------FPGLIALRFLLGLFESGG-WPGVV 156 (495)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHhccc-chHHH
Confidence 677788999999999999999999555554444433333322222222 233455555666655544 45556
Q ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhccchhhHHHHHHHHHHHHHhhhcccCCC
Q 011308 406 LLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE------QLGPLILYTIFGSFCFLAVIYVKRNVMETK 474 (489)
Q Consensus 406 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (489)
.++..-+.+++|+..+|+.+....+|+++|+.+...+.. ..||++.|++-+++.++..++.++++|+..
T Consensus 157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P 231 (495)
T KOG2533|consen 157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP 231 (495)
T ss_pred HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence 689999999999999999999999999999999888643 467999999999999999988888877643
No 253
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.49 E-value=1.4e-07 Score=86.14 Aligned_cols=179 Identities=21% Similarity=0.110 Sum_probs=132.5
Q ss_pred hHHHHHHHHhhhhccccccccchhhhhhhcccccccchHH------HHHHH-HHHHHHHHHHHHHHHhhcccCchhHhhh
Q 011308 51 PHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAE------GLVVS-TCLGGAFVGSMFSGWIADGIGRRRAFQL 123 (489)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------g~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~l~~ 123 (489)
+.++..+...|+..+.....+.....+.++.++.+++... ..... +..+++..+-.+...+.|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5666777788887777777777888888888776554421 11111 1122333355566778999999999999
Q ss_pred hhHHHHHHHHHHhhhhh--------HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHH
Q 011308 124 CALPMIIGASMSAITKN--------LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALF 195 (489)
Q Consensus 124 ~~~~~~i~~~~~~~~~~--------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~ 195 (489)
|.+++++..+..+...| ...+.+..++.-+|-+ .....+-+|.+|.+-|+..-|+..+..-+|.+++..
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 99999999999988766 1223334444444422 233456789999999999999999999999999999
Q ss_pred hhccccc-----ccchHHHHHHHhHHHHHHHHHHhhcccCChh
Q 011308 196 VGLPAKE-----ILGWWRICFWVATIPAAFLALFMEFCAESPH 233 (489)
Q Consensus 196 ~~~~l~~-----~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~ 233 (489)
.-.++.+ ..+ -|+.|++.+...++..+..+++||+.+
T Consensus 461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecccc
Confidence 9888888 666 799999999999988888888998753
No 254
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.49 E-value=2.1e-06 Score=74.39 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=101.5
Q ss_pred hhhcchhHHHHhHHHHHHhcCCCCCchhHHH---HHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 011308 300 QQLSGINAVFYFSSTVFKNAGVPSDSGNICV---GIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFV 376 (489)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (489)
...+..+.+..|.+.+.+..+++..+...+. .++..+ .+..|.+.|++|.+..+..+.+...++...+........
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 3344566778899999998999887754444 345544 477899999999999999999999999988877655432
Q ss_pred CCCcchhHHHHHHHHHHHHHhcCC-CcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Q 011308 377 SSSGALSLSLGGMLLFVLTFSLGA-GPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIF 455 (489)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 455 (489)
. ..+.|.. +...+..+.+.++ .........+.+| ++||++.|+.-....+++.+-..+...+.+. +....+...
T Consensus 92 ~-~~~~~~~--~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~l 166 (250)
T PF06813_consen 92 P-SLPVWLM--CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFL 166 (250)
T ss_pred C-ccchHHH--HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHH
Confidence 1 1222322 2222223222222 1222233457788 5799999999999999998888887766654 333333444
Q ss_pred HHHHH
Q 011308 456 GSFCF 460 (489)
Q Consensus 456 ~~~~~ 460 (489)
+....
T Consensus 167 a~~~~ 171 (250)
T PF06813_consen 167 AVLPA 171 (250)
T ss_pred HHHHH
Confidence 44333
No 255
>PRK11462 putative transporter; Provisional
Probab=98.49 E-value=2.2e-06 Score=83.15 Aligned_cols=112 Identities=12% Similarity=0.003 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh--hHHHHHHHHHHHhhcccchhhhHHHHHHh
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK--NLWGMLLGRLFVGTGMGIGPAVAALYVSE 168 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 168 (489)
+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+ +...+++.-++.|++.+...+...+++.|
T Consensus 266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad 345 (460)
T PRK11462 266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD 345 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888899999999999999999988765554444333333322 23334455566788777777776778888
Q ss_pred cCCc-------cchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308 169 VSPA-------YVRGAYGSSTQIAACLGILVALFVGLPAKE 202 (489)
Q Consensus 169 ~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 202 (489)
..+. ++.|...+......-+|..+++.+++.+.+
T Consensus 346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~ 386 (460)
T PRK11462 346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA 386 (460)
T ss_pred hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7762 223455566666777777777777666553
No 256
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.47 E-value=5.2e-06 Score=79.15 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhc
Q 011308 330 VGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLS 409 (489)
Q Consensus 330 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (489)
.++..++.++..|.++||+|||..+........+....+.+... | .++ ..-..+++ ........++++
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~---------~-~~~-~~~l~g~~-~~~~s~~~a~va 138 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGY---------W-FFL-LLGLSGGF-SAIFSVGFAYVA 138 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHH---------H-Hhh-hcccccch-hhhhhhhhhhee
Confidence 36777888999999999999999998888877777666655431 1 111 11111111 122345566899
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHH
Q 011308 410 EIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQ 479 (489)
Q Consensus 410 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (489)
|....+.|....|+.+.....+..++|.+.+.+.+..|+..+|.+.++..++..+......||+..++.+
T Consensus 139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 9999999999999999999999999999999999999999999999999999999888888887655443
No 257
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=98.45 E-value=2.9e-05 Score=76.16 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=116.8
Q ss_pred cccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHHHHHHHHHhhhhh-------
Q 011308 69 VVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPMIIGASMSAITKN------- 140 (489)
Q Consensus 69 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~------- 140 (489)
.....+..+.++++.+.... .-..+.+.-......+.+++++|- +||-+.+.++.++..++..+..++..
T Consensus 56 ~~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~ 133 (571)
T KOG1237|consen 56 LVSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF 133 (571)
T ss_pred chhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 35666777888888776544 566777777777888999999996 58999999998888887655443221
Q ss_pred ------------------HHHHHHHHHHHhhcccchhhhHHHHHHhcCC---cc---chhhHHHHHHHHHHHHHHHHHHh
Q 011308 141 ------------------LWGMLLGRLFVGTGMGIGPAVAALYVSEVSP---AY---VRGAYGSSTQIAACLGILVALFV 196 (489)
Q Consensus 141 ------------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~i~~~~ 196 (489)
...+..+.-+..+|.|+.-+...++-+|-++ ++ ++...+.++....++|..++..+
T Consensus 134 ~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~ 213 (571)
T KOG1237|consen 134 MCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV 213 (571)
T ss_pred cccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH
Confidence 1245666777888999999999999999998 32 22367888889999999999998
Q ss_pred hcccccccchHHHHHHHhHHHHHHHHHHh
Q 011308 197 GLPAKEILGWWRICFWVATIPAAFLALFM 225 (489)
Q Consensus 197 ~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~ 225 (489)
-.+.-+..+ |.+.|.+..+...+..+++
T Consensus 214 ~vyiq~~~~-w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 214 LVYIQDNVG-WKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HHhhhhccc-ceeeccHHHHHHHHHHHHH
Confidence 888878888 9999988877766555443
No 258
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.45 E-value=7e-06 Score=75.02 Aligned_cols=153 Identities=16% Similarity=0.256 Sum_probs=123.0
Q ss_pred cchhhhh-hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc-ccCchhHhhhhhHHHHHHHHHHh---hhhhHHHHH
Q 011308 71 NETLESI-SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD-GIGRRRAFQLCALPMIIGASMSA---ITKNLWGML 145 (489)
Q Consensus 71 ~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~ 145 (489)
-.++.++ .+-||.+..+. .-+.+....|..++-...|++.. |.++|+.-..++....++..+.. ...+.+.+.
T Consensus 228 D~iLEPygg~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~ 305 (403)
T PF03209_consen 228 DVILEPYGGEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFR 305 (403)
T ss_pred HHHcCCchhHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 3344333 45689998888 78999999999999999999877 78888888888888777766644 445788899
Q ss_pred HHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc---------hHHHHHHHhHH
Q 011308 146 LGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG---------WWRICFWVATI 216 (489)
Q Consensus 146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~---------~Wr~~f~~~~~ 216 (489)
..-++.|++.|.......+...|...+++.|..+|.+.....++..++..+++.+.|... .+...|.+.++
T Consensus 306 ~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ 385 (403)
T PF03209_consen 306 PGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAV 385 (403)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998887765321 16677777777
Q ss_pred HHHHHHHHh
Q 011308 217 PAAFLALFM 225 (489)
Q Consensus 217 ~~~~~~~~~ 225 (489)
..++.+++.
T Consensus 386 ll~~a~~ll 394 (403)
T PF03209_consen 386 LLLAALVLL 394 (403)
T ss_pred HHHHHHHHH
Confidence 666655543
No 259
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.30 E-value=1.5e-05 Score=63.54 Aligned_cols=107 Identities=12% Similarity=0.106 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCc
Q 011308 93 VVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA 172 (489)
Q Consensus 93 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 172 (489)
-.++......+++++...+.+++|.|+.+++|.+...+-.... +-++.+.++.+-++.|++.+..+++...++.+..++
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~ 120 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE 120 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence 3566667778888999999999999999999999888655444 456788899999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccc
Q 011308 173 YVRGAYGSSTQIAACLGILVALFVGLPA 200 (489)
Q Consensus 173 ~~r~~~~~~~~~~~~~G~~i~~~~~~~l 200 (489)
++|++-.+++......+.++|.++...+
T Consensus 121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888887765444
No 260
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=98.27 E-value=5.5e-05 Score=71.44 Aligned_cols=108 Identities=12% Similarity=0.152 Sum_probs=87.6
Q ss_pred hHhhhhhHHHHHHHHHHhhhh---------hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCcc---chhhHHHHHHHHH
Q 011308 119 RAFQLCALPMIIGASMSAITK---------NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAY---VRGAYGSSTQIAA 186 (489)
Q Consensus 119 ~~l~~~~~~~~i~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~ 186 (489)
|.++++.++..+|.++..++. +.+.++++-++.++|.|+.-|...++..|.++++ +|...+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567788888888888844432 2367889999999999999999999999999865 4667888999999
Q ss_pred HHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc
Q 011308 187 CLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF 227 (489)
Q Consensus 187 ~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~ 227 (489)
++|..++..+.+++.+..+ |.+.|.+.++..++..+..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999 999999988887776655443
No 261
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.22 E-value=2e-06 Score=59.49 Aligned_cols=70 Identities=26% Similarity=0.327 Sum_probs=58.8
Q ss_pred HHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308 57 IISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM 128 (489)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~ 128 (489)
-..+++.....+.+.|.+|.+.++.|++..++ |.+.++..+...++++++|.++||+|+++.++....++
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34455556666778888999999999998888 99999999999999999999999999999887765543
No 262
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=98.15 E-value=0.0089 Score=57.75 Aligned_cols=278 Identities=11% Similarity=0.124 Sum_probs=142.7
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccc---cccchHHHHHHHHHHH-HHHHHHHHHHHhhcccCchhHhhhh
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGF---SGSTMAEGLVVSTCLG-GAFVGSMFSGWIADGIGRRRAFQLC 124 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~ 124 (489)
.+..++.+.+..|+..++.+.. -.+.+.+=+ +.+.. ..+-....+ ...+...+..++++|++|++++-+.
T Consensus 22 E~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I--~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~ 95 (491)
T PF03219_consen 22 ELKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVI--PFLKVWGVLPVAILFTILYSKLSNRLSREKLFYII 95 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3444555555555555554332 223332211 22222 444443333 3345567789999999999988766
Q ss_pred hHHHHHHHHHHhhh---------h----------------------hHHHHHHHHHHHhhcccchhh-hHHHHHHhcCCc
Q 011308 125 ALPMIIGASMSAIT---------K----------------------NLWGMLLGRLFVGTGMGIGPA-VAALYVSEVSPA 172 (489)
Q Consensus 125 ~~~~~i~~~~~~~~---------~----------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~ 172 (489)
...+.....+.++. + +.|.+.+.-+..-+-.....+ .-..+..|.++.
T Consensus 96 ~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~ 175 (491)
T PF03219_consen 96 IIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTV 175 (491)
T ss_pred HHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 66665555554441 0 112222222222222233333 346788999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccccc---------ccchHHHHHHH-hHHHH---HHHHHHhhcccCChhHHHhcC
Q 011308 173 YVRGAYGSSTQIAACLGILVALFVGLPAKE---------ILGWWRICFWV-ATIPA---AFLALFMEFCAESPHWLFKRG 239 (489)
Q Consensus 173 ~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~---------~~~~Wr~~f~~-~~~~~---~~~~~~~~~~~e~~~~~~~~~ 239 (489)
+|-.+..++++.+.++|.++++.+...+.+ ... |...+.. ..+.. ++......++.+.. ..++
T Consensus 176 ~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v---l~~~ 251 (491)
T PF03219_consen 176 EEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDA-WELSLNSLMGIVLILGIVIILLYRYMNKNV---LTDP 251 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCcc
Confidence 999999999999999999999988887777 122 5543322 11111 11111111111100 0000
Q ss_pred ChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc
Q 011308 240 RGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA 319 (489)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (489)
+.. +.....++++.+..-..+++.++++|....+.+....+... .+.+..-.....++.
T Consensus 252 ~~~-----------------~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~----inLvE~~wK~~lk~~ 310 (491)
T PF03219_consen 252 RFY-----------------PSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGIS----INLVEVVWKSQLKQL 310 (491)
T ss_pred ccc-----------------hhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 000 00001122223333456677788888777665555444442 233332222222222
Q ss_pred CCCCCc-------hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHH
Q 011308 320 GVPSDS-------GNICVGIANLSGSIIAMILMDKLGRRVLLLGS 357 (489)
Q Consensus 320 ~~~~~~-------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~ 357 (489)
--++.. .....++..++..++++.+.+|+|-+......
T Consensus 311 ~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Alit 355 (491)
T PF03219_consen 311 YPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALIT 355 (491)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 112211 34445666666678888899998876655443
No 263
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.12 E-value=0.00018 Score=72.07 Aligned_cols=151 Identities=15% Similarity=0.114 Sum_probs=96.5
Q ss_pred HhcCCCCCchh---HHHHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHH
Q 011308 317 KNAGVPSDSGN---ICVGIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLF 392 (489)
Q Consensus 317 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (489)
+..+.+..... ..+....-+..+++|++.|+ +|+++.+..+.++..++..++.+...............+.++.+.
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi 95 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI 95 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence 34555554422 23333444666788999997 689999999988888888777654321110011112233334444
Q ss_pred HHHHhcCCCcchhhhhcccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccchhhHHHHHHHHHH
Q 011308 393 VLTFSLGAGPVPSLLLSEIFPNR---IRAKAMAVCMAVHWVINFFVGLLFLRLLEQL-------GPLILYTIFGSFCFLA 462 (489)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~ 462 (489)
.++.+. .-|...+...|.++++ .+-..+.+.....++|+.+++.+.+++.+.. +|...|.+.+++++++
T Consensus 96 a~G~Gg-iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia 174 (654)
T TIGR00926 96 ALGTGG-IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILA 174 (654)
T ss_pred Hhhccc-cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHH
Confidence 443332 3355556777777643 4778889999999999999999999887553 4777888888887777
Q ss_pred HHHhhh
Q 011308 463 VIYVKR 468 (489)
Q Consensus 463 ~~~~~~ 468 (489)
.++...
T Consensus 175 ~lvf~~ 180 (654)
T TIGR00926 175 LIVFMA 180 (654)
T ss_pred HHHHHH
Confidence 666543
No 264
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.04 E-value=0.00028 Score=63.68 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=94.6
Q ss_pred HHHHhcCCCCCchhHHH---HHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHH
Q 011308 314 TVFKNAGVPSDSGNICV---GIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGML 390 (489)
Q Consensus 314 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (489)
..++..|++...+..++ .....+...+.|.+.||+|||+..+...++..++++..-. .+....++.-+
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---------~~~~~L~~GRv 129 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---------SNYPVLLLGRV 129 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---------cccHHHHHHHH
Confidence 44566788766643333 3556677778899999999999988888777777654321 22333444445
Q ss_pred HHHHHHhcCCCcchhhhhcc----cCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc--cchhhHHHHHHHHHHH
Q 011308 391 LFVLTFSLGAGPVPSLLLSE----IFPNRIRAKAMAVCMA-VHWVINFFVGLLFLRLLEQLG--PLILYTIFGSFCFLAV 463 (489)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~ 463 (489)
+.+...+......-.=++.| -+|++..+...+...+ .+.+..+.+..+...+.+..+ ...+|.....+.+++.
T Consensus 130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~ 209 (354)
T PF05631_consen 130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAA 209 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 55544443322221113333 3576767777776663 344555666666666777665 4778888888888888
Q ss_pred HHhhhcccCCCC
Q 011308 464 IYVKRNVMETKG 475 (489)
Q Consensus 464 ~~~~~~~~~~~~ 475 (489)
++.....+|..+
T Consensus 210 ~~I~~~W~ENyg 221 (354)
T PF05631_consen 210 VLILKTWPENYG 221 (354)
T ss_pred HHHHhcccccCC
Confidence 777655566543
No 265
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.01 E-value=3.6e-05 Score=72.68 Aligned_cols=144 Identities=16% Similarity=0.022 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCC-chhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcch
Q 011308 326 GNICVGIANLSGSIIAMILMDKLGR-RVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVP 404 (489)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (489)
+.....++..++++..|+...|.++ |+.++.+.+...++.+++....... +...++.+.+-.+.+++ .+.....
T Consensus 76 viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~---~~~~y~mL~~R~l~Gvg--~~n~a~l 150 (488)
T KOG2325|consen 76 VIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP---NGVKYLMLVARILTGVG--VGNFAVL 150 (488)
T ss_pred HHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHcCcC--cccHHHH
Confidence 4445668888999999999999885 8888899999999988874443321 12334444444444333 3444566
Q ss_pred hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-----------cchhhHHHHHHHHHHHHHhhhccc
Q 011308 405 SLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL--G-----------PLILYTIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 405 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g-----------~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
-.|+++....+.|.++++..+...-+|.++||.+...+.... | |..+-++.+.+.++..++...+.+
T Consensus 151 R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 151 RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence 778888777788999999999888888888888765443210 1 445667778888888777777776
Q ss_pred CCC
Q 011308 472 ETK 474 (489)
Q Consensus 472 ~~~ 474 (489)
|..
T Consensus 231 E~~ 233 (488)
T KOG2325|consen 231 EVY 233 (488)
T ss_pred ecc
Confidence 643
No 266
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=97.97 E-value=0.00039 Score=66.40 Aligned_cols=55 Identities=18% Similarity=0.033 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308 383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL 438 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 438 (489)
+..++...+++..-|... .....+..+..++++|..+-.+...+..+|-.+|..+
T Consensus 373 ~~~~~~~~l~gltnGy~~-s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLG-SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHhhhHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445554444322 3444466777888888888888888888887777765
No 267
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=97.92 E-value=0.00014 Score=62.15 Aligned_cols=240 Identities=7% Similarity=0.000 Sum_probs=109.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhccc---c--cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHH
Q 011308 173 YVRGAYGSSTQIAACLGILVALFVGLPA---K--EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAE 247 (489)
Q Consensus 173 ~~r~~~~~~~~~~~~~G~~i~~~~~~~l---~--~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 247 (489)
|+|++.+.+...+.++|.++....--.- . -... |++.+.+.+++.++-+++..++-..-. ...++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~-W~~I~si~~lL~~IpLIly~ifGk~fd-~~~~~-------- 71 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNN-WQWILSIFILLIFIPLILYIIFGKNFD-IYSPK-------- 71 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccc-ccCcc--------
Confidence 5677777788888888887765442111 1 1122 999999888777666555443321100 00000
Q ss_pred HHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCC-----
Q 011308 248 LERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVP----- 322 (489)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 322 (489)
+.+++++.+.+.+.+..+.+|++.-|...+.+....... .....+.+........+.+
T Consensus 72 ---------------~k~~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~--V~p~t~~~~~~~~~~s~~ni~~~~ 134 (267)
T PF07672_consen 72 ---------------EKQEKENSTLSKKPSYKSILKEKETWKWILIYGIWLVVV--VFPFTPSWFNILIWISPANIKSVV 134 (267)
T ss_pred ---------------cccccccccccccchHHHHHccchHHHHHHHHHHHheeE--EEeccchhHhHhhhcCcccccccc
Confidence 001111222234467888999888876665554443321 1111223333333333321
Q ss_pred -CCc------hhH-HHHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhh-cccCCCcchhHHHHHHHHH
Q 011308 323 -SDS------GNI-CVGIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAAT-SFVSSSGALSLSLGGMLLF 392 (489)
Q Consensus 323 -~~~------~~~-~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 392 (489)
.+. ... ++..+..+|.+..|...+. ++||+.+.. .+.+.+.+.++..... .....+...........++
T Consensus 135 ~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~-~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl 213 (267)
T PF07672_consen 135 SGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHF-IISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFL 213 (267)
T ss_pred cccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 111 122 2223333454555665554 345554432 2222222111111111 1111111112223333344
Q ss_pred HHHHhcCCCcchhhhhccc--CChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 393 VLTFSLGAGPVPSLLLSEI--FPNRIRAKAMAVCMAVHWVINFFVGLLFL 440 (489)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~g~~~~~~~~g~~~~~~~~g 440 (489)
.+.+..+..++......|. ..|++.|...|+.-.++++.-.+.-.+..
T Consensus 214 ~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S 263 (267)
T PF07672_consen 214 AGFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILS 263 (267)
T ss_pred HHHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444443 23455677777666666665555444433
No 268
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=97.76 E-value=0.039 Score=52.14 Aligned_cols=152 Identities=11% Similarity=0.020 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccc-hHHHHHHHHHHH-HHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGST-MAEGLVVSTCLG-GAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
.+..++.+.+..++..++.+ .+-.+.+.+.++... ....++-+...+ +..+..++.+++.+++.|++++-.-+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~ 100 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG 100 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 34445555555555555433 344556666554221 123677777777 667888999999999999999988777
Q ss_pred HHHHHHHHHhhhh---------h-----------------------HHHHHHHHHHHhhcccchhh-hHHHHHHhcCCcc
Q 011308 127 PMIIGASMSAITK---------N-----------------------LWGMLLGRLFVGTGMGIGPA-VAALYVSEVSPAY 173 (489)
Q Consensus 127 ~~~i~~~~~~~~~---------~-----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~ 173 (489)
.+....+++++.- + .|...+.-.+.-+-.+...+ .-.....|.+..+
T Consensus 101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ 180 (509)
T COG3202 101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE 180 (509)
T ss_pred HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 7777777766520 1 12222222222222222222 3345678888888
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308 174 VRGAYGSSTQIAACLGILVALFVGLPAKEIL 204 (489)
Q Consensus 174 ~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~ 204 (489)
|-.|..++++.+.+++..++..+..++.+..
T Consensus 181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~ 211 (509)
T COG3202 181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHR 211 (509)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 8899999999999999999999888887743
No 269
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=97.73 E-value=0.0063 Score=56.22 Aligned_cols=118 Identities=8% Similarity=-0.027 Sum_probs=57.5
Q ss_pred HHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHH----HHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308 54 LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGG----AFVGSMFSGWIADGIGRRRAFQLCALPMI 129 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~----~~~~~~~~g~l~dr~Grr~~l~~~~~~~~ 129 (489)
.+.++..+-.......+..+.+.+.+++.-+..+ -.....+.+. ..+....-..+.-|. |+++.....+...
T Consensus 21 ~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~i 96 (406)
T KOG1479|consen 21 LIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAI 96 (406)
T ss_pred HHHHHHhcccccchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3334444444555666777778777776543332 2333333333 334444444555552 2222111111111
Q ss_pred HHHHHH--hh-------hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchh
Q 011308 130 IGASMS--AI-------TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRG 176 (489)
Q Consensus 130 i~~~~~--~~-------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~ 176 (489)
+....+ +. ...+...++.-.+.|++.|..........++ +|++.-+
T Consensus 97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytq 151 (406)
T KOG1479|consen 97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQ 151 (406)
T ss_pred HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHH
Confidence 111111 11 1245666667778888877777666666665 4555443
No 270
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.65 E-value=0.00098 Score=64.08 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=97.4
Q ss_pred HHHHhcCCCCCchhHHHHHHHH--HHHHHHHHHHhhhC-----CchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHH
Q 011308 314 TVFKNAGVPSDSGNICVGIANL--SGSIIAMILMDKLG-----RRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSL 386 (489)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
.+.++.+.++........+..+ ...++.|.++|-+. ||+-++.+.++..++.+.+...+.. ..+.....
T Consensus 15 ~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~----~~s~~~~~ 90 (433)
T PF03092_consen 15 FLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS----ESSAAIAV 90 (433)
T ss_pred HHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc----cchhhhHH
Confidence 3445578888776666666555 45678999999862 4455556666665555555544331 11222222
Q ss_pred HHHHHHHHHHhcCCCcchhhhhcccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q 011308 387 GGMLLFVLTFSLGAGPVPSLLLSEIF---PNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAV 463 (489)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 463 (489)
+.+.+...+.... -.+.-++..|.. |.+ +|...+.......+|++++..+.|.+.+..+++..|.+.+.+..+..
T Consensus 91 ~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~ 168 (433)
T PF03092_consen 91 VLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML 168 (433)
T ss_pred HHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence 2233333333222 122333444543 444 88889999999999999999999999999999999988888877776
Q ss_pred HHhhhcccC
Q 011308 464 IYVKRNVME 472 (489)
Q Consensus 464 ~~~~~~~~~ 472 (489)
+..++..+|
T Consensus 169 ~~~~~~~~e 177 (433)
T PF03092_consen 169 IVALFLLEE 177 (433)
T ss_pred HHHHHhhhh
Confidence 665555555
No 271
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.61 E-value=0.00078 Score=62.35 Aligned_cols=160 Identities=18% Similarity=0.138 Sum_probs=97.9
Q ss_pred ccccchhhhHHHHHhhh---hcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308 285 RNFGVVFIGSTLFALQQ---LSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM 361 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~ 361 (489)
+++|.+++...+..+.+ +..+..+..+...+++ ..........++.+..++..+.+-|+.||+|-|.....+..+.
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln 119 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN 119 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence 45566666665555544 2233344444444443 0011112666777888899999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 362 AIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR 441 (489)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 441 (489)
+++..+=........++.....+...+..+.+...-.... +..-...--+|+++|+++..+..+.+.+|.+++..+-+.
T Consensus 120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppi 198 (480)
T KOG2563|consen 120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILG-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPI 198 (480)
T ss_pred HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhc-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccce
Confidence 9988776655443222111112333333333333222211 212223345788999999999999999999888887776
Q ss_pred HHHHh
Q 011308 442 LLEQL 446 (489)
Q Consensus 442 l~~~~ 446 (489)
+..+.
T Consensus 199 lV~~~ 203 (480)
T KOG2563|consen 199 LVPSS 203 (480)
T ss_pred ecCCC
Confidence 66543
No 272
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=97.44 E-value=0.0026 Score=59.22 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH-----HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHH
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM-----IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALY 165 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~-----~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 165 (489)
-+....|.+|..++.--.. +. |+ |++.+...+-. .+.....-+.++.|..++.-+..|+..|..++.....
T Consensus 284 ~~Y~~~YQ~GVFISRSS~~-~~-ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~ 359 (402)
T PF02487_consen 284 RWYQLLYQLGVFISRSSLP-FF-RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR 359 (402)
T ss_pred HHHHHHHHHHHhhhhccee-ee-eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5667777777665543221 11 33 44433332222 2222233346789999999999999999999999999
Q ss_pred HHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 011308 166 VSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK 201 (489)
Q Consensus 166 i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~ 201 (489)
+.|-.++++|..+++..+.+-++|..++.+++-.+-
T Consensus 360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876543
No 273
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.17 E-value=0.042 Score=44.02 Aligned_cols=105 Identities=13% Similarity=0.037 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhh
Q 011308 327 NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSL 406 (489)
Q Consensus 327 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (489)
..+......+.+++.+.+.+++|.|+.+.++.++..+-....... +.+..+....+.+++.+..+.+. ..
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~---------~~~~l~~~s~l~G~~~a~lW~aq-g~ 112 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP---------NSYTLYPASALLGFGAALLWTAQ-GT 112 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhhhHHhhHhh-hH
Confidence 334445566777888999999999999998888777554443221 22445666667777776665543 34
Q ss_pred hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 407 LLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR 441 (489)
Q Consensus 407 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 441 (489)
++.+...++.+++-.|+.-.+.+.+.++|..+.-.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888899999999888888887777766543
No 274
>PRK03612 spermidine synthase; Provisional
Probab=96.95 E-value=0.032 Score=54.83 Aligned_cols=132 Identities=17% Similarity=0.099 Sum_probs=75.5
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHH--HH-HHHHHH----hhhhhH-HHHHHHHHHH
Q 011308 80 DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALP--MI-IGASMS----AITKNL-WGMLLGRLFV 151 (489)
Q Consensus 80 ~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~--~~-i~~~~~----~~~~~~-~~l~~~r~l~ 151 (489)
-+|-+..+. +.+.+++..|.++|+.+++++.++--++ ....-+.+ .+ ++..+. ++...+ ..++..-++.
T Consensus 44 ~~G~s~~~~--~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 120 (521)
T PRK03612 44 LLGDSVTQF--STVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI 120 (521)
T ss_pred HhCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345444444 8999999999999999999887432222 22111111 11 111111 111111 1223344567
Q ss_pred hhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc-cccchHHHHHHHhH
Q 011308 152 GTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK-EILGWWRICFWVAT 215 (489)
Q Consensus 152 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-~~~~~Wr~~f~~~~ 215 (489)
++..|+..|....+..+.. .++-+...|-......+|.++|.++.+++. ...|..+..+++..
T Consensus 121 ~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~ 184 (521)
T PRK03612 121 GLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGS 184 (521)
T ss_pred HHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 7777888888777666543 223456677778888888888888876654 35553455554433
No 275
>PF12832 MFS_1_like: MFS_1 like family
Probab=96.92 E-value=0.0056 Score=42.36 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=45.5
Q ss_pred hhhcchhHHHHhHHHHHHhcCCCCCchhHHH---HHHHHHHHHHHHHHHhhhCCchhHHHHHH
Q 011308 300 QQLSGINAVFYFSSTVFKNAGVPSDSGNICV---GIANLSGSIIAMILMDKLGRRVLLLGSFL 359 (489)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~ 359 (489)
..++......-|++.++++.|.+..+...+. .+..+++.++.|.++||.++++.......
T Consensus 11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 11 FYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 3344566677778888899999988855544 46777899999999999998887665443
No 276
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=96.84 E-value=0.081 Score=50.99 Aligned_cols=109 Identities=10% Similarity=-0.056 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcc--------------h--------hHHHHHHHHHH
Q 011308 336 SGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGA--------------L--------SLSLGGMLLFV 393 (489)
Q Consensus 336 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--------~~~~~~~~~~~ 393 (489)
+..++.+++++|++|++............++++.+......+..++ . .+....+.+..
T Consensus 59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~ 138 (472)
T TIGR00769 59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMA 138 (472)
T ss_pred HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHH
Confidence 3367789999999999887776666655555555542211111000 0 01111222222
Q ss_pred HHHhcCCCc-chhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 394 LTFSLGAGP-VPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 394 ~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (489)
-.++....+ +.+.+++|.+..++..+-.++....+++|..+++.+...+.+
T Consensus 139 elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 139 ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223322233 567789999999999999999999999999999999888763
No 277
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.83 E-value=0.0094 Score=56.56 Aligned_cols=145 Identities=15% Similarity=0.115 Sum_probs=102.3
Q ss_pred HHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH
Q 011308 56 AIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS 135 (489)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~ 135 (489)
..++..+-+++.-.+...+..+...-|+++... |..-+...+....+.+...++.+|+|..|.-..+.....+...++
T Consensus 263 as~alalLY~TVLsf~~lmt~yl~~~G~s~~~i--gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~ 340 (432)
T PF06963_consen 263 ASFALALLYFTVLSFGGLMTAYLKSQGYSPSVI--GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALC 340 (432)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 333333333443345556666666669888877 899999999999999999999999999888777765444333322
Q ss_pred h------hhh----hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308 136 A------ITK----NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE 202 (489)
Q Consensus 136 ~------~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 202 (489)
. -++ +...++.+-++.=+|.=.......-++.|..|+++||...|......++-.++...++-.+.+
T Consensus 341 v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~ 417 (432)
T PF06963_consen 341 VVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR 417 (432)
T ss_pred HHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 2 122 334444455555556556777888899999999999999999999988888877777654443
No 278
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.82 E-value=0.011 Score=55.86 Aligned_cols=118 Identities=15% Similarity=0.053 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhcccC-CCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh---hHHHHHHHHHHH
Q 011308 352 VLLLGSFLGMAIAMGVQAIAATSFVS-SSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR---IRAKAMAVCMAV 427 (489)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~ 427 (489)
+.+..+.++..++.+++.+....... .........+++.+...+.+ +.-|....+..|.++++ ++.+.+..+...
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 45667778888888876665543322 12233445555666555555 33456666777877654 577888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcc
Q 011308 428 HWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNV 470 (489)
Q Consensus 428 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
.++|..+++.+.+++.++.||...|.+.++..+++.+..+...
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~ 123 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR 123 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999888888877665443
No 279
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.09 Score=50.13 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhh---cccCchhHhhhhhHHHHHHHHHHhhh------------------hhHHHHHHHHHHHhhcccc
Q 011308 99 GGAFVGSMFSGWIA---DGIGRRRAFQLCALPMIIGASMSAIT------------------KNLWGMLLGRLFVGTGMGI 157 (489)
Q Consensus 99 ~~~~~~~~~~g~l~---dr~Grr~~l~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~ 157 (489)
+|..++..+.+.+. +++||++.+.++..+..++.++.-.+ +++...++.-++.|++.+.
T Consensus 290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~ 369 (461)
T KOG3098|consen 290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC 369 (461)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence 34444445555555 46899999999998888887776542 2456777788999999999
Q ss_pred hhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcc
Q 011308 158 GPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLP 199 (489)
Q Consensus 158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~ 199 (489)
.....+.++.+.+ +++|..+.++...-..++..++......
T Consensus 370 ~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 370 FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999 6678888888887777777666555443
No 280
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.33 E-value=0.062 Score=53.89 Aligned_cols=167 Identities=11% Similarity=-0.018 Sum_probs=109.0
Q ss_pred hhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccC----
Q 011308 305 INAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVS---- 377 (489)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 377 (489)
..++...+..+-+..+++... +....-++..+...+..+...|..|-+.+-.+.++++++.++..+.......
T Consensus 113 ~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~ 192 (735)
T KOG3626|consen 113 VGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYE 192 (735)
T ss_pred hhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence 355555555655666766655 3334457777777788888888888888889999999998888776321110
Q ss_pred ----------C--------------------------CcchhHHHHHHHHHHHHHhcC---CCcchhhhhcccCChhhHH
Q 011308 378 ----------S--------------------------SGALSLSLGGMLLFVLTFSLG---AGPVPSLLLSEIFPNRIRA 418 (489)
Q Consensus 378 ----------~--------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~ 418 (489)
. ........+.+++..+..+.| ..++...|+.|.+.+++.+
T Consensus 193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Sp 272 (735)
T KOG3626|consen 193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSP 272 (735)
T ss_pred hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCc
Confidence 0 011111111122222222223 4456677999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------c-cchhhHHHHHHHHHHHHHhhhccc
Q 011308 419 KAMAVCMAVHWVINFFVGLLFLRLLEQL------------------G-PLILYTIFGSFCFLAVIYVKRNVM 471 (489)
Q Consensus 419 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~------------------g-~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
...|+..++..+|-++|-.+++.+.+.+ | |..-|++.+.+.++..+.++++-+
T Consensus 273 lYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk 344 (735)
T KOG3626|consen 273 LYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK 344 (735)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999999999998888888877766421 2 455677788888877777665443
No 281
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=96.12 E-value=0.25 Score=44.88 Aligned_cols=127 Identities=28% Similarity=0.171 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308 326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS 405 (489)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (489)
......+...++.+..|.+.||.|||+....+.....++.+...+... ...+..+......+.+.+ ...+...
T Consensus 44 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~~~ 116 (338)
T COG0477 44 LLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------VGLALLLILRLLQGLGGG-GLLPVAS 116 (338)
T ss_pred HHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhhhH-HHHHHHH
Confidence 445555666777799999999999997776666543333333332221 111222222222222222 2345666
Q ss_pred hhhcccCCh-hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--hccchhhHHHHHHH
Q 011308 406 LLLSEIFPN-RIRAKAMAVCMA-VHWVINFFVGLLFLRLLEQ--LGPLILYTIFGSFC 459 (489)
Q Consensus 406 ~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~ 459 (489)
.+..|..|+ +.++...+.... ...++..++|.+.+.+... .+|+..+.......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 117 ALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 788888886 578998898888 5778888888777666654 34555444444443
No 282
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=96.09 E-value=0.0013 Score=60.16 Aligned_cols=111 Identities=14% Similarity=-0.038 Sum_probs=1.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHHHhhccc-----CCCcchhHHHHHHHHHHHHHhcC
Q 011308 326 GNICVGIANLSGSIIAMILMDKL-GRRVLLLGSFLGMAIAMGVQAIAATSFV-----SSSGALSLSLGGMLLFVLTFSLG 399 (489)
Q Consensus 326 ~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 399 (489)
....+.++..+|+.+..+..-+. .+|.+.. ..+.=.+..-++.+...... ..-.+.++.++...++++.-|..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 45567889999999887743221 2333332 22222222222222211100 00112223333344444443322
Q ss_pred CCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308 400 AGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL 438 (489)
Q Consensus 400 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~ 438 (489)
......+..+..+++.|..+-.+....-.+|-.+|..+
T Consensus 266 -~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 266 -STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --HHHH---------------------------------
T ss_pred -hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445567777777878777777777777777666655
No 283
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=95.93 E-value=0.32 Score=45.70 Aligned_cols=147 Identities=13% Similarity=0.018 Sum_probs=90.6
Q ss_pred HHhHHHHHHh-cCCCCCc----hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchh
Q 011308 309 FYFSSTVFKN-AGVPSDS----GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALS 383 (489)
Q Consensus 309 ~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
|+..+++.+. .+++... +.-...-..+...+....+.|.++.|++++.+.+...+...++.+... ..
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s--------v~ 95 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS--------VL 95 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc--------HH
Confidence 3444444443 4554443 222223345566677788999999999999998887777777666533 23
Q ss_pred HHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhhHHHHHHHHH
Q 011308 384 LSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG--PLILYTIFGSFCFL 461 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~ 461 (489)
..-+.-++++...+. -...++++-...|+++.-++.+.......+|..++..++-.+....+ +.....+..+...+
T Consensus 96 ~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~ 173 (412)
T PF01770_consen 96 AMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSL 173 (412)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 344445555554432 22344566666788889999999999999998888888877666433 33333333333333
Q ss_pred HHHH
Q 011308 462 AVIY 465 (489)
Q Consensus 462 ~~~~ 465 (489)
+.++
T Consensus 174 a~~~ 177 (412)
T PF01770_consen 174 ALLI 177 (412)
T ss_pred HHHH
Confidence 3333
No 284
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.92 E-value=0.002 Score=63.39 Aligned_cols=168 Identities=15% Similarity=0.017 Sum_probs=1.1
Q ss_pred hcchhHHHHhHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCC
Q 011308 302 LSGINAVFYFSSTVFKNAGVPSDSG---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSS 378 (489)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (489)
.....+....++.+-++.++++... ....-++.++..++..++.+|-.|-+.+-.+.++++++.+++.+........
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y 95 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY 95 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence 3344555555666666677776664 4444577778888888888887777788888888888888877654322110
Q ss_pred --------------------------------------CcchhHHHHHHHHHHHHHhcC---CCcchhhhhcccCChhhH
Q 011308 379 --------------------------------------SGALSLSLGGMLLFVLTFSLG---AGPVPSLLLSEIFPNRIR 417 (489)
Q Consensus 379 --------------------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~ 417 (489)
.......+..+++.....+.+ ..++..+|+.|.+++++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s 175 (539)
T PF03137_consen 96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS 175 (539)
T ss_dssp --------------------------------------------------------SSS---------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence 000111122222222233333 345667899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hc-cchhhHHHHHHHHHHHHHhhhc
Q 011308 418 AKAMAVCMAVHWVINFFVGLLFLRLLEQ---------------------LG-PLILYTIFGSFCFLAVIYVKRN 469 (489)
Q Consensus 418 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~ 469 (489)
+...|+......+|-.+|-.+++...+. .| |...|++.+.+.++..+.+..+
T Consensus 176 plYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F 249 (539)
T PF03137_consen 176 PLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF 249 (539)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999988888887777765531 12 4556667777776666655544
No 285
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=95.85 E-value=0.17 Score=48.66 Aligned_cols=106 Identities=9% Similarity=-0.029 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCch--hHhhhh--hHHHHHHHHHHhh---------hhhHHHHHHHHHHHhhcccch
Q 011308 92 LVVSTCLGGAFVGSMFSGWIADGIGRR--RAFQLC--ALPMIIGASMSAI---------TKNLWGMLLGRLFVGTGMGIG 158 (489)
Q Consensus 92 ~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~--~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~~~~ 158 (489)
.....|.++-.+|..+..+. ..-++| .+.+.+ =+++.-..++|.. -++-+..++..++.|+..|-.
T Consensus 311 i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~ 389 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL 389 (437)
T ss_pred HHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence 55666777777777654432 111223 333222 1223333334432 246667778899999999999
Q ss_pred hhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhc
Q 011308 159 PAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGL 198 (489)
Q Consensus 159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~ 198 (489)
...+..+..+..++++|..+..+...+..+|..+|..++-
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888887754
No 286
>PRK03612 spermidine synthase; Provisional
Probab=95.66 E-value=0.14 Score=50.47 Aligned_cols=49 Identities=27% Similarity=0.343 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHHH
Q 011308 416 IRAKAMAVCMAVHWVINFFVGLLFLRLLE-QLGPLILYTIFGSFCFLAVI 464 (489)
Q Consensus 416 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~ 464 (489)
..+...|-......+|+++|+.+.+.+.- ..|......+.+.+.++.++
T Consensus 142 ~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 142 HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 35677888888999999999999887654 67765555555555544443
No 287
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=95.64 E-value=1.6 Score=39.35 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCc--cc
Q 011308 97 CLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA--YV 174 (489)
Q Consensus 97 ~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~ 174 (489)
..+..+.++++.+.+..++|-|..++++.......- ..=+-+.+..++-.-.+.|++.+..+..--+++++.-.+ ++
T Consensus 67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~ 145 (390)
T KOG3097|consen 67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ 145 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence 344556677777799999999999988877665432 222346788899999999999999887766666655432 22
Q ss_pred h-------------hhHHHHHHHHHHHHHHHHHHh
Q 011308 175 R-------------GAYGSSTQIAACLGILVALFV 196 (489)
Q Consensus 175 r-------------~~~~~~~~~~~~~G~~i~~~~ 196 (489)
| +..+.++..+..+|..++..+
T Consensus 146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3 334555555666665555544
No 288
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=93.98 E-value=0.019 Score=52.57 Aligned_cols=108 Identities=15% Similarity=0.182 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhh--HHHHHHHHHH----------hhhhhHHHHHHHHHHHhhcccch
Q 011308 92 LVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCA--LPMIIGASMS----------AITKNLWGMLLGRLFVGTGMGIG 158 (489)
Q Consensus 92 ~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~--~~~~i~~~~~----------~~~~~~~~l~~~r~l~G~~~~~~ 158 (489)
.....|.++-.+|..+.++.-=+ -.+|++...+. +++.-..++| .+.+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 34667788888888776653211 13444443221 2222222222 12345567778899999999999
Q ss_pred hhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcc
Q 011308 159 PAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLP 199 (489)
Q Consensus 159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~ 199 (489)
.+....+..+..++++|..+..+......+|..+|..++-.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888888888888888776643
No 289
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=93.11 E-value=0.75 Score=32.32 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=52.4
Q ss_pred HHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308 307 AVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAAT 373 (489)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (489)
.+...+|...++.+++... ......++.++|.+...++.++.++++.+..+.+...+....+.+...
T Consensus 10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444678888888887766 556667899999999999888888888888888888888877776543
No 290
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=91.73 E-value=6 Score=38.71 Aligned_cols=42 Identities=12% Similarity=-0.103 Sum_probs=38.0
Q ss_pred chhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 403 VPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (489)
+.+.+++|..+.++..+..++.....++|.++++.+...+.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999888777
No 291
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=91.34 E-value=6.6 Score=39.31 Aligned_cols=138 Identities=13% Similarity=0.100 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHHHhhcccCC--------------C-cchhHHHHHHHHHH
Q 011308 330 VGIANLSGSIIAMILMDKL-GRRVLLLGSFLGMAIAMGVQAIAATSFVSS--------------S-GALSLSLGGMLLFV 393 (489)
Q Consensus 330 ~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~ 393 (489)
..-......+.+++++|-+ ||-+.+..+.++..++..++.+........ . ......+....+..
T Consensus 82 f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~l 161 (571)
T KOG1237|consen 82 FGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYL 161 (571)
T ss_pred HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHH
Confidence 3344456667889999985 788888888777777766555544322110 0 11111122222222
Q ss_pred HHHhc-CCCcchhhhhcccCC----hhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Q 011308 394 LTFSL-GAGPVPSLLLSEIFP----NRIR--AKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYV 466 (489)
Q Consensus 394 ~~~~~-~~~~~~~~~~~~~~p----~~~~--~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 466 (489)
...+. +.-|....+-+|.++ .+.+ ..-+.......+.|..++-.+.-+.-++.+|...|.+..++.+++.++.
T Consensus 162 ia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 162 IALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred heeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence 22222 234555566677766 2223 3667778888888998888888888788899999988888877776655
Q ss_pred h
Q 011308 467 K 467 (489)
Q Consensus 467 ~ 467 (489)
.
T Consensus 242 ~ 242 (571)
T KOG1237|consen 242 L 242 (571)
T ss_pred H
Confidence 3
No 292
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=90.92 E-value=13 Score=35.03 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=10.7
Q ss_pred hhhhcccCChhhHHHHHHHHHH
Q 011308 405 SLLLSEIFPNRIRAKAMAVCMA 426 (489)
Q Consensus 405 ~~~~~~~~p~~~~~~~~g~~~~ 426 (489)
+...++ +|+++....++-.+.
T Consensus 139 ~G~a~~-~P~~ytqavm~G~a~ 159 (406)
T KOG1479|consen 139 YGLAGL-FPSEYTQAVMSGQAL 159 (406)
T ss_pred hhhhhc-CCHHHHHHHHhcchh
Confidence 334444 587766555543333
No 293
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=90.69 E-value=0.31 Score=45.82 Aligned_cols=130 Identities=12% Similarity=-0.023 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS 170 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 170 (489)
.|-..++.+...+.+....++.||+|-|+.+..+...+.++..+.+...+.+....-|-..|+-.+....+-...++++.
T Consensus 335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~ 414 (498)
T KOG0637|consen 335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA 414 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence 34466677777799999999999999888888888888888888888888888888888888655555444444443332
Q ss_pred Cc-----------------------cchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHH
Q 011308 171 PA-----------------------YVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAF 220 (489)
Q Consensus 171 ~~-----------------------~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~ 220 (489)
.. ..+|...|+.+....+..++.....|.+.+..|.=+.+-...+..++.
T Consensus 415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~ 487 (498)
T KOG0637|consen 415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALL 487 (498)
T ss_pred HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHH
Confidence 11 124566677777777777777666677666655434444444444333
No 294
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=90.40 E-value=1.9 Score=39.69 Aligned_cols=114 Identities=11% Similarity=0.004 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH------Hhh------hhhHHHHHHHHHHHhhcccch--hhhHHHH-
Q 011308 101 AFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM------SAI------TKNLWGMLLGRLFVGTGMGIG--PAVAALY- 165 (489)
Q Consensus 101 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~------~~~------~~~~~~l~~~r~l~G~~~~~~--~~~~~~~- 165 (489)
..+..++.|...|+..|+|++...+.+--++..+ ..+ +.++..+..+-++.-...+.. ...+.++
T Consensus 76 ~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~ 155 (503)
T KOG2601|consen 76 QLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTIL 155 (503)
T ss_pred HHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEE
Confidence 3466677889999999999987776543332222 222 235555555554443322221 1111111
Q ss_pred -HHhcC----CccchhhH---HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhH
Q 011308 166 -VSEVS----PAYVRGAY---GSSTQIAACLGILVALFVGLPAKEILGWWRICFWVAT 215 (489)
Q Consensus 166 -i~~~~----~~~~r~~~---~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~ 215 (489)
-.||. ..+.+... .+..-..-.....+.|.+.|.+.+..+ -|..-...+
T Consensus 156 i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvs-l~~~~g~f~ 212 (503)
T KOG2601|consen 156 IERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVS-LRASAGTFA 212 (503)
T ss_pred ecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeec-hhhhhhhhH
Confidence 12332 22333333 344455556667889999999988776 455333333
No 295
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=88.88 E-value=8.1 Score=33.98 Aligned_cols=134 Identities=12% Similarity=0.084 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCch--hHhhhhhHHHHHHHHHHhh----hh---hHHHHHHHHHHHhhcccchhh
Q 011308 90 EGLVVSTCLGGAFVGSMFSGWIADGIGRR--RAFQLCALPMIIGASMSAI----TK---NLWGMLLGRLFVGTGMGIGPA 160 (489)
Q Consensus 90 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~i~~~~~~~----~~---~~~~l~~~r~l~G~~~~~~~~ 160 (489)
.|.+.+.++++..+|+-+..++..|-.+| ..+.+..+..++...+..+ ++ +...=+++-.+.-.+.|..+|
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP 363 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP 363 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence 38999999999999999998988876554 3444444444433333222 22 122223444445566788999
Q ss_pred hHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308 161 VAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF 224 (489)
Q Consensus 161 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~ 224 (489)
....+-+++.|++.|...+.++..-.++=..++-..--.-....+ -|..|-+..+...+..+.
T Consensus 364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~-tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTT-TRNMFGICSAFLFVASIL 426 (454)
T ss_pred HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccc-cchhhhhhHHHHHHHHHH
Confidence 999999999999999988887765544322221111000001122 467777776665555443
No 296
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=88.45 E-value=2.4 Score=37.94 Aligned_cols=142 Identities=17% Similarity=0.130 Sum_probs=91.3
Q ss_pred HHHHHHHhhhhccccccccchh--hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchh------Hhhhh
Q 011308 53 VLVAIISSFLFGYHLGVVNETL--ESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRR------AFQLC 124 (489)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~------~l~~~ 124 (489)
.+-++..++..++.+..+.+.+ |. .+.+..+.+. |.=|....|.+|..++ +=+-|+=+-+ ++..-
T Consensus 253 MvPL~~VY~~EY~INQGl~ell~F~c-~~g~sls~~s-qYRwyqvlYQlGVFiS-----RSS~~~~~~p~l~~LailQ~v 325 (409)
T KOG3880|consen 253 MVPLALVYFAEYFINQGLAELLLFPC-SHGFSLSKDS-QYRWYQVLYQLGVFIS-----RSSINLFTMPYLWLLAILQFV 325 (409)
T ss_pred HHHHHHHHHHHHHHhhhhHhhEEecc-ccCCccchhh-cchhhheeeeeeEEEE-----eccceEEechHHHHHHHHHHH
Confidence 3445555555555443333321 22 3444444322 2257788887764432 1122222211 12222
Q ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 011308 125 ALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK 201 (489)
Q Consensus 125 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~ 201 (489)
.+++.+...+..+.++++..++.-+..|+-.|..++...--+.+-.++++|-.+++....+-++|..++..++-.+-
T Consensus 326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 34444555566678899999999999999889888888888888889999999999999999999999988876554
No 297
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=87.73 E-value=18 Score=31.42 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308 332 IANLSGSIIAMILMDKLGRRVLLLGSFLGMAI 363 (489)
Q Consensus 332 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~ 363 (489)
++..+..+.+-+++.|+..|.+.+.+.+++.+
T Consensus 251 lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~ 282 (294)
T KOG2881|consen 251 LCTGLAVIGGKYLASKISVRTVTLIGGILFII 282 (294)
T ss_pred HHHHHHHhhhHHHhhhheeEEEEEecchhHHH
Confidence 45555555666778899888776665554443
No 298
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=85.70 E-value=33 Score=33.30 Aligned_cols=112 Identities=11% Similarity=-0.069 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccC---C-----------Cc-ch-h-------HHHHHH
Q 011308 333 ANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVS---S-----------SG-AL-S-------LSLGGM 389 (489)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~-~~-~-------~~~~~~ 389 (489)
+.++..++..++.+++.+.++...........++++++......+ + .+ .. | +.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 345566667778888888877665555555444444443321110 0 01 00 0 111112
Q ss_pred HHHHHHHhcCCC-cchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 390 LLFVLTFSLGAG-PVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE 444 (489)
Q Consensus 390 ~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~ 444 (489)
.+..=.++.... -+.+...+|....++..+-+++.+...+++..++..+..++.+
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222222211 2446678899999999999999999999999999998888765
No 299
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=83.96 E-value=1.6 Score=38.90 Aligned_cols=134 Identities=13% Similarity=0.053 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS 170 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 170 (489)
|.+.-+-.+-..+..+.+-...||+---+-..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++-+. +
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y 143 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-Y 143 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-C
Confidence 344444445555666667777888655444556677788888999999999998888888888877766554444333 3
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHhhcccccc--cchHHHHHHHhHHHHHHHHHHhhc-ccC
Q 011308 171 PAYVRGAYGSSTQIAACLGILVALFVGLPAKEI--LGWWRICFWVATIPAAFLALFMEF-CAE 230 (489)
Q Consensus 171 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~--~~~Wr~~f~~~~~~~~~~~~~~~~-~~e 230 (489)
++. ..+-++.+.+...++|..--..+.+. .. -|...++...+-++.+...++ +++
T Consensus 144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~s-pk~Tlli~l~lP~lfa~~yf~lL~~ 201 (409)
T KOG3880|consen 144 PSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLS-PKSTLLIMLFLPALFAFAYFFLLKS 201 (409)
T ss_pred CCc----eeccccCCCCcchhhhhhHHHHHhhhcCCC-hhhHHHHHHHHHHHHHHHHHheeCC
Confidence 322 23333334333344444333333331 22 366666655544444444444 443
No 300
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=83.38 E-value=22 Score=33.27 Aligned_cols=31 Identities=10% Similarity=0.003 Sum_probs=18.3
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011308 409 SEIFPNRIRAKAMAVCMAVHWVINFFVGLLF 439 (489)
Q Consensus 409 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 439 (489)
.....+++.|-+........+.|.+++-.++
T Consensus 159 LtmLs~e~lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 159 LTMLSRENLGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred HHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence 3444556677666666666666666665543
No 301
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=80.86 E-value=12 Score=32.86 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-cCchhHhh----hhhHHHHHHHHHHhh-h----hhHHHHHHHHHHHhhcccchhhh
Q 011308 92 LVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQ----LCALPMIIGASMSAI-T----KNLWGMLLGRLFVGTGMGIGPAV 161 (489)
Q Consensus 92 ~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~----~~~~~~~i~~~~~~~-~----~~~~~l~~~r~l~G~~~~~~~~~ 161 (489)
...-.+..|+.+|....|++... +-||+.+. .+++++.+..+.... . .++..+++.-++.|++.=+..++
T Consensus 145 ~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V 224 (267)
T PF07672_consen 145 IFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV 224 (267)
T ss_pred HHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44455666667777777877764 55565543 334444444444211 1 24667888888888875444444
Q ss_pred HHHHHHhcCCccchhhHHHHHHHHHHHHHHH
Q 011308 162 AALYVSEVSPAYVRGAYGSSTQIAACLGILV 192 (489)
Q Consensus 162 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i 192 (489)
...+-.| ++..++.+..-.++..+++|.++
T Consensus 225 iL~lPhE-yK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 225 ILNLPHE-YKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HhcChhh-hcCCCcceehhHHHHHHHHHHHH
Confidence 3333333 23333333434444555666544
No 302
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=78.82 E-value=40 Score=33.54 Aligned_cols=14 Identities=7% Similarity=0.401 Sum_probs=8.6
Q ss_pred HHhhhccccccchh
Q 011308 278 FSELISPRNFGVVF 291 (489)
Q Consensus 278 ~~~~~~~~~~~~~~ 291 (489)
-.|+||.|....++
T Consensus 251 hgDVFR~P~~~~ll 264 (521)
T PF02990_consen 251 HGDVFRPPKHPMLL 264 (521)
T ss_pred hHHHhcCcCCchHH
Confidence 35778877754333
No 303
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=78.38 E-value=41 Score=28.61 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccc
Q 011308 180 SSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 180 ~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
.......-++..+|..+++.+.+..+
T Consensus 165 ~~~~~~~i~~f~~Ga~~ga~l~~~~~ 190 (209)
T PF06912_consen 165 ALRYLLIILSFFIGAILGALLYRRLG 190 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455556666666666666655
No 304
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=77.97 E-value=6.3 Score=36.13 Aligned_cols=109 Identities=11% Similarity=0.100 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchh--HhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHh
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRR--AFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSE 168 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~ 168 (489)
|..-++..+..+++.+..|.+.-++.|.. .+..+.+..+...++++.++++|..+++-++.+.-.....+++..-+++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~ 353 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIAR 353 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHH
Confidence 77788888899999999999998887763 3444455555566677778899998888888877777778888888888
Q ss_pred cCCccchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308 169 VSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE 202 (489)
Q Consensus 169 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 202 (489)
....+.-|..+|+..... .++=.++.....+
T Consensus 354 nL~~e~~gLvFGiNTFvA---l~lQsilT~iVvd 384 (433)
T KOG3810|consen 354 NLSSELFGLVFGINTFVA---LILQSILTLIVVD 384 (433)
T ss_pred hhhhhhheeeeehHHHHH---HHHHHhheEEEEc
Confidence 888888888888876543 3344444434444
No 305
>COG3619 Predicted membrane protein [Function unknown]
Probab=76.38 E-value=49 Score=28.46 Aligned_cols=131 Identities=11% Similarity=0.094 Sum_probs=59.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhcccCc-hh-Hhh-hhhHHHHHHHHHHhh----hhhHHHHHHHHHHHh-------
Q 011308 87 TMAEGLVVSTCLGGAFVGSMFSGWIADGIGR-RR-AFQ-LCALPMIIGASMSAI----TKNLWGMLLGRLFVG------- 152 (489)
Q Consensus 87 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~-~l~-~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~G------- 152 (489)
+...........+..+++......+..|..| .. .+. ...++..+.....++ +++....+..-+.+|
T Consensus 54 ~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~~~~~~l~~~~~ll~~~v~~~~~~~p~~~~~~~~~il~~f~mg~Qnasf~ 133 (226)
T COG3619 54 DAALAVLLLLPILAFVLGVAAAELISRRATRSFIPVLLLVSLLLALIALLALGFIPESSPDFVAVILVAFAMGIQNASFR 133 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3434666777777777886666666666654 22 222 222222222333333 234444444444444
Q ss_pred ----hcccchhhhH-----HHHHHhcCCccchh-hHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHH
Q 011308 153 ----TGMGIGPAVA-----ALYVSEVSPAYVRG-AYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAA 219 (489)
Q Consensus 153 ----~~~~~~~~~~-----~~~i~~~~~~~~r~-~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~ 219 (489)
...+..+... ..-+.+++..|+.. .--.......-++.++|...++.+....+ ....|..+++.+
T Consensus 134 k~~g~~~~~t~~TGnl~~~~~~l~~~l~~k~~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g--~~al~~~~~~i~ 208 (226)
T COG3619 134 KVGGAPYGTTYVTGNLKSAGRGLGRYLSGKDKEKLRDWLIYLSLILSFIVGAICGALLTLFFG--LKALWVVAALIL 208 (226)
T ss_pred HhcCccccchhhhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Confidence 2322222211 12234444333222 22233344444556666666666666555 344444444433
No 306
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=70.62 E-value=48 Score=30.63 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=55.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH-------HHHHhh--hhhHHHHHHHHHHHhhccc
Q 011308 86 STMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG-------ASMSAI--TKNLWGMLLGRLFVGTGMG 156 (489)
Q Consensus 86 ~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~-------~~~~~~--~~~~~~l~~~r~l~G~~~~ 156 (489)
...+.+.+.+.|...+.+|+...-++.|.--.-+.+..-.++..++ .+.+++ .++-+.+++.-++.|.-.|
T Consensus 41 ~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG 120 (508)
T COG4262 41 GILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVG 120 (508)
T ss_pred ceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 3344489999999999999998888877543332222222222221 111221 2466778888899999999
Q ss_pred chhhhHHHHHHh
Q 011308 157 IGPAVAALYVSE 168 (489)
Q Consensus 157 ~~~~~~~~~i~~ 168 (489)
...|..+.++..
T Consensus 121 ~EiPL~mrml~~ 132 (508)
T COG4262 121 AEIPLLMRMLQR 132 (508)
T ss_pred cchHHHHHHHHH
Confidence 999999988876
No 307
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=68.51 E-value=43 Score=31.32 Aligned_cols=50 Identities=6% Similarity=0.079 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 011308 413 PNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLA 462 (489)
Q Consensus 413 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 462 (489)
++.......+.....-..-..+.|.+.|.+.+..+.+..-..+++..++.
T Consensus 169 s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vs 218 (503)
T KOG2601|consen 169 SPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVS 218 (503)
T ss_pred CHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHHH
Confidence 44445555566666677778899999999888776666555555555553
No 308
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=66.85 E-value=26 Score=27.86 Aligned_cols=32 Identities=6% Similarity=-0.088 Sum_probs=24.3
Q ss_pred chhhhhcccCChhhHHHHHHHHHHHHHHHHHH
Q 011308 403 VPSLLLSEIFPNRIRAKAMAVCMAVHWVINFF 434 (489)
Q Consensus 403 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~ 434 (489)
+.|..++-...++..|+..|+-.+-.+++...
T Consensus 114 isYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 114 ISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred hhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 44556666777788999999999888887654
No 309
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=65.62 E-value=38 Score=33.04 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=36.4
Q ss_pred HHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHH
Q 011308 147 GRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGI 190 (489)
Q Consensus 147 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~ 190 (489)
.-++.-+..-..+++..++-+++.+|.-=|..|.+.++..++|.
T Consensus 411 ~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGG 454 (544)
T PF13000_consen 411 QHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGG 454 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCC
Confidence 45666677777888888999999999998999999999888773
No 310
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=63.15 E-value=66 Score=29.03 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=43.3
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc---cCchhHhhh
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG---IGRRRAFQL 123 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr---~Grr~~l~~ 123 (489)
+|+....+.+..++++.-+..+..+..+..+++.++.-.+.. +++.+... ..++.+-.++ ||.||.=++
T Consensus 21 ~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~--al~lal~A------~~~a~r~~~~~~TfGy~R~eiL 92 (296)
T COG1230 21 ERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDAL--ALLLALIA------IKLARRPATKRFTFGYKRLEIL 92 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHH--HHHHHHHH------HHHhcCCCCCCCCccHhHHHHH
Confidence 444445555555555555555666666777777777543333 33332222 2222333333 777777666
Q ss_pred hhHHHHHHHHHHh
Q 011308 124 CALPMIIGASMSA 136 (489)
Q Consensus 124 ~~~~~~i~~~~~~ 136 (489)
+.+..++..+..+
T Consensus 93 aa~~nav~Li~~s 105 (296)
T COG1230 93 AAFLNALLLIVVS 105 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555444433
No 311
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.27 E-value=36 Score=24.98 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhh-CCchhHH
Q 011308 332 IANLSGSIIAMILMDKL-GRRVLLL 355 (489)
Q Consensus 332 ~~~~~~~~~~g~l~d~~-~~~~~~~ 355 (489)
+.+++.....||+.||+ +.++.-+
T Consensus 53 IsGilVGa~iG~llD~~agTsPwgl 77 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGTSPWGL 77 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 44555566678999997 4555433
No 312
>COG4769 Predicted membrane protein [Function unknown]
Probab=61.39 E-value=16 Score=29.13 Aligned_cols=52 Identities=19% Similarity=0.080 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhh
Q 011308 96 TCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGT 153 (489)
Q Consensus 96 ~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 153 (489)
++.+..++.+...-++..++|+|.+-.+|.- ...++.+|..++++.+++.|-
T Consensus 81 l~sfaG~i~S~L~m~~l~~f~~k~~S~lgiS------~mGaF~hNl~QLivas~Lv~~ 132 (181)
T COG4769 81 LYSFAGAILSTLFMYFLYQFGPKYLSLLGIS------VMGAFTHNLGQLIVASFLVFT 132 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEeeeehh------hHHHHHHhHHHHHHHHHHHhc
Confidence 3445556667777788999999988666643 334578999999999998764
No 313
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=61.35 E-value=1.2e+02 Score=28.23 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011308 426 AVHWVINFFVGLLFLRLL 443 (489)
Q Consensus 426 ~~~~~g~~~~~~~~g~l~ 443 (489)
..-++|+..+....+.+.
T Consensus 146 ~~DYLGal~~gLl~p~ll 163 (508)
T COG4262 146 TLDYLGALAGGLLWPFLL 163 (508)
T ss_pred hhHhhhhhhHHHHHHHHH
Confidence 336667666666655543
No 314
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=59.54 E-value=34 Score=27.22 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHH
Q 011308 139 KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVA 193 (489)
Q Consensus 139 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 193 (489)
+++..+++.-.+.|+|. ..+.+.+++--+++++.|..+|+-.+-.+++-+.-
T Consensus 95 P~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~~ 146 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLGL---LGISYGILSASWDPEREGSLLGWEEFKRNWGRMWE 146 (153)
T ss_pred CchHHHHHHHHHHHHHH---HhhhhhhcccccCCCCCCCcccHHHHHHhHHHHHH
Confidence 45555666666665542 23456667777788888999999888888776543
No 315
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.20 E-value=38 Score=24.83 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=29.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308 413 PNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 413 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 447 (489)
.++.++.+.++-...-.+++++.....|++.|++-
T Consensus 36 a~s~k~~~~a~klssefIsGilVGa~iG~llD~~a 70 (116)
T COG5336 36 AESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFA 70 (116)
T ss_pred chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34668888888888889999999999999999864
No 316
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.45 E-value=70 Score=31.42 Aligned_cols=26 Identities=8% Similarity=-0.079 Sum_probs=12.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308 322 PSDSGNICVGIANLSGSIIAMILMDK 347 (489)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~g~l~d~ 347 (489)
+.+...+...+..++..+.+|+.+-|
T Consensus 360 ~RGsLmT~~~~l~v~~G~~agY~s~r 385 (628)
T KOG1278|consen 360 SRGSLMTAMVLLFVFMGFVAGYVSAR 385 (628)
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhhh
Confidence 33444444444444555555555544
No 317
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=49.05 E-value=1.1e+02 Score=23.02 Aligned_cols=45 Identities=11% Similarity=-0.045 Sum_probs=28.8
Q ss_pred HHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308 316 FKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360 (489)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 360 (489)
+...+.+.........+...++.+++|.++-|..++|-...+...
T Consensus 29 l~~~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~ 73 (116)
T PF12670_consen 29 LYFTSLSESILPWLVVIIYILSVFIGGFYAGRKAGSKGWLHGLLV 73 (116)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 334455666666666777888888888887776554444444443
No 318
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=48.09 E-value=70 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccCchh
Q 011308 95 STCLGGAFVGSMFSGWIADGIGRRR 119 (489)
Q Consensus 95 s~~~~~~~~~~~~~g~l~dr~Grr~ 119 (489)
.-|.+|+.+...+.|++.+|..+++
T Consensus 60 gGyl~gf~~~a~i~g~~~~~~~~~~ 84 (148)
T PF02632_consen 60 GGYLLGFPLAALIIGLLAERLKRSR 84 (148)
T ss_pred ChHHHHHHHHHHHHHHHHHhccccc
Confidence 4567788899999999999988864
No 319
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=47.60 E-value=2.2e+02 Score=25.95 Aligned_cols=33 Identities=6% Similarity=-0.101 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhcccchhh-hHHHHHHhcCCcc
Q 011308 141 LWGMLLGRLFVGTGMGIGPA-VAALYVSEVSPAY 173 (489)
Q Consensus 141 ~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~ 173 (489)
...-.+--.+++++.|...- ...-++.|....+
T Consensus 260 ~~~~~~~~~~~a~aaG~~lyv~~~ell~~~~~~~ 293 (317)
T PF02535_consen 260 SSSDIVSGILLAFAAGTFLYVAFVELLPEEFHNK 293 (317)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444455666776665433 3333445544433
No 320
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=46.44 E-value=78 Score=20.33 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCC
Q 011308 187 CLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAES 231 (489)
Q Consensus 187 ~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~ 231 (489)
-+|.+++.+.+......++ .+....+..+.+++..++...+|++
T Consensus 12 il~~vvgyI~ssL~~~~~n-~~~~~Ii~vi~~i~~~~~~~~i~~~ 55 (57)
T PF11151_consen 12 ILGEVVGYIGSSLTGVTYN-FTTAAIIAVIFGIIVANIIAVIPKK 55 (57)
T ss_pred HHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455555555444444455 6777777667766666655455543
No 321
>PRK10263 DNA translocase FtsK; Provisional
Probab=46.03 E-value=1.6e+02 Score=32.80 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhhC
Q 011308 330 VGIANLSGSIIAMILMDKLG 349 (489)
Q Consensus 330 ~~~~~~~~~~~~g~l~d~~~ 349 (489)
...++.+|..+...+..-+|
T Consensus 61 ~Nl~GiVGA~LAD~L~~LFG 80 (1355)
T PRK10263 61 HNLGGMPGAWLADTLFFIFG 80 (1355)
T ss_pred ccccchHHHHHHHHHHHHHh
Confidence 34556666666666655566
No 322
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=44.07 E-value=2e+02 Score=24.40 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=32.7
Q ss_pred cchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHh
Q 011308 402 PVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL-ILYTIFGSFCFLAVIYV 466 (489)
Q Consensus 402 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~~~~~~~~~~ 466 (489)
|....+..+. +++.|-+..--......+...+....+..+.+.+|.. ..|-+.+++.+....+-
T Consensus 22 p~f~~lt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ 86 (203)
T PF01914_consen 22 PIFLSLTKGM-SPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALE 86 (203)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3333344444 4444544444444444444555555666677777743 35556666555544433
No 323
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=41.70 E-value=88 Score=25.96 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCc
Q 011308 94 VSTCLGGAFVGSMFSGWIADGIGR 117 (489)
Q Consensus 94 ~s~~~~~~~~~~~~~g~l~dr~Gr 117 (489)
..-|.+++.++..+.|++.||.-+
T Consensus 88 TgGyL~gfi~aa~l~G~l~~k~~~ 111 (184)
T COG1268 88 TGGYLIGFIIAAFLIGLLAEKIRK 111 (184)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhc
Confidence 345778889999999999999885
No 324
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=41.57 E-value=79 Score=23.28 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT 138 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~ 138 (489)
|=+.+.|.-.+.+.++.+++..|+.-+-+-=.+|..++.++..+..+.
T Consensus 57 GRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 57 GRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 677888888999999999999999988887778877777776655443
No 325
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=37.84 E-value=1.2e+02 Score=22.20 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccch---HHHHHHHhHHHH
Q 011308 180 SSTQIAACLGILVALFVGLPAKEILGW---WRICFWVATIPA 218 (489)
Q Consensus 180 ~~~~~~~~~G~~i~~~~~~~l~~~~~~---Wr~~f~~~~~~~ 218 (489)
|.......+..++|..+|-++-+.++. |-.+|++.++..
T Consensus 46 g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 46 GLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 444444455566677777777666552 555555544443
No 326
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=36.80 E-value=1.3e+02 Score=22.21 Aligned_cols=47 Identities=9% Similarity=-0.109 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 011308 323 SDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQA 369 (489)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 369 (489)
.+-.+..++-..++.+++.++..|+..+.+.-..+..++.++..++.
T Consensus 56 fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 56 FGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred chhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 34478888888899999999999999887777777776666655443
No 327
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.70 E-value=2.6e+02 Score=23.69 Aligned_cols=8 Identities=0% Similarity=0.102 Sum_probs=3.0
Q ss_pred cchhhhHH
Q 011308 288 GVVFIGST 295 (489)
Q Consensus 288 ~~~~~~~~ 295 (489)
|...+-..
T Consensus 79 ~~~~ld~~ 86 (206)
T PF06570_consen 79 WLMALDNS 86 (206)
T ss_pred HHHHHHHH
Confidence 33333333
No 328
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=36.19 E-value=2.6e+02 Score=26.01 Aligned_cols=37 Identities=11% Similarity=-0.015 Sum_probs=16.6
Q ss_pred hhHHHHHHHHhhhhccccccccchhhhhhhcccccccch
Q 011308 50 LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTM 88 (489)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 88 (489)
|.....+.++..+..... ..+..-..+.++ |.+....
T Consensus 9 ~~~~~~~~lgQ~lsl~~~-~t~~~s~~l~~~-~~~~P~~ 45 (334)
T PF06027_consen 9 RRFWIVLLLGQVLSLCIT-GTGTFSSLLANK-GVNIPTF 45 (334)
T ss_pred HHHHHHHHHHHHHHHHHH-hHHHHHHHHHhc-CccCcHH
Confidence 344445555665553332 223333344444 6654433
No 329
>PRK02237 hypothetical protein; Provisional
Probab=35.63 E-value=1.4e+02 Score=22.20 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhh
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI 137 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~ 137 (489)
|=+.+.|.-.+.+.++.+++..|+.-+-+-=.+|..+..+|..+.-+
T Consensus 59 GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 59 GRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 67788898899999999999999998877777777777777655544
No 330
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=35.61 E-value=3.6e+02 Score=26.24 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=74.9
Q ss_pred HHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308 54 LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 133 (489)
+.+.+=.++..+......|.+ +..++|++.++. ..+.+.-.+...++.++--....+.|-|-....+.-...++.+
T Consensus 19 ~~lglQH~lamfg~~V~VPli--vg~a~~l~~~~~--~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~ 94 (451)
T COG2233 19 LLLGLQHLLAMFGATVLVPLL--VGLALGLSAEDT--AYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPM 94 (451)
T ss_pred HHHHHHHHHHHHhcchHhhHH--hccCCCCCHHHH--HHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHH
Confidence 344444455555544444433 456788887777 7888888888889888876644456666666666555555554
Q ss_pred HHhhhh---hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHH
Q 011308 134 MSAITK---NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGS 180 (489)
Q Consensus 134 ~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 180 (489)
...... .....+.+-+..|+..-...+.....+.+.+||---|....
T Consensus 95 i~~~~~~g~~~~~~~G~ii~ag~~~~li~~~~~~~l~rlfPPvVtG~Vi~ 144 (451)
T COG2233 95 IAIGGTTGDGIAALLGGIIAAGLVYFLISPIVKIRLARLFPPVVTGPVVL 144 (451)
T ss_pred HHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEee
Confidence 444332 35566666666666544443333337888888876665443
No 331
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=32.26 E-value=90 Score=26.84 Aligned_cols=50 Identities=16% Similarity=0.130 Sum_probs=32.8
Q ss_pred HHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHh
Q 011308 146 LGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFV 196 (489)
Q Consensus 146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~ 196 (489)
..-.-.|+|.|..+.++..-+.+.+|+ ......++-.+.+.+..+.|-..
T Consensus 176 ALAMasGvGSgSMMaAa~~aL~~~~P~-~a~~i~A~AaaSNllt~~~G~Y~ 225 (241)
T PF11299_consen 176 ALAMASGVGSGSMMAAASGALAAAYPE-MADQILAFAAASNLLTSVTGLYM 225 (241)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHCcc-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557888888888888888998864 44555555555555554444433
No 332
>PRK11111 hypothetical protein; Provisional
Probab=31.87 E-value=3.3e+02 Score=23.35 Aligned_cols=67 Identities=18% Similarity=0.067 Sum_probs=32.7
Q ss_pred CCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHh
Q 011308 399 GAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL-ILYTIFGSFCFLAVIYV 466 (489)
Q Consensus 399 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~~~~~~~~~~ 466 (489)
+..|....+..+..+ ++|-+..--......+.-.+....+.++.+.+|.. ..|-+.+++.+....+-
T Consensus 25 g~ipiflslt~~~s~-~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~ 92 (214)
T PRK11111 25 GILPVFISMTSHQTA-AERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMS 92 (214)
T ss_pred hhHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 344555555555544 43433322233333333344555566677777743 34556666555444433
No 333
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=28.78 E-value=1.6e+02 Score=23.48 Aligned_cols=52 Identities=10% Similarity=0.026 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 011308 94 VSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFV 151 (489)
Q Consensus 94 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 151 (489)
.-.+.++..+.+...-.+..|..||+.-..+. +++.+.++|..|+.++.++.
T Consensus 67 ~f~~Sl~Ggl~S~~vM~ll~~~~~~~~S~~gi------Si~Gai~HN~gQl~va~~i~ 118 (148)
T PF07456_consen 67 SFLFSLAGGLLSLLVMALLKKLFKKKFSLIGI------SIAGAIAHNIGQLIVASLII 118 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCccHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777888888888888777655543 24455678888888877653
No 334
>PRK02237 hypothetical protein; Provisional
Probab=28.16 E-value=1.4e+02 Score=22.12 Aligned_cols=47 Identities=13% Similarity=0.008 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 011308 323 SDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQA 369 (489)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~ 369 (489)
.+-.+..++-..++.+++.++..|+....+--..+..++.++..++.
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~ 104 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIM 104 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhe
Confidence 34477888888899999999999999887777777776666655443
No 335
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=26.04 E-value=1.7e+02 Score=17.99 Aligned_cols=15 Identities=20% Similarity=0.135 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhc
Q 011308 433 FFVGLLFLRLLEQLG 447 (489)
Q Consensus 433 ~~~~~~~g~l~~~~g 447 (489)
.+|..+.+++.+..+
T Consensus 5 iiGa~vGg~l~~~lg 19 (48)
T PF04226_consen 5 IIGAFVGGWLFGLLG 19 (48)
T ss_pred hHHHHHHHHHHHHhc
Confidence 344444445444444
No 336
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=25.96 E-value=2.4e+02 Score=19.94 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhcccCc-------hhHhhhhhHHHHHHHHHHhhhhhH
Q 011308 100 GAFVGSMFSGWIADGIGR-------RRAFQLCALPMIIGASMSAITKNL 141 (489)
Q Consensus 100 ~~~~~~~~~g~l~dr~Gr-------r~~l~~~~~~~~i~~~~~~~~~~~ 141 (489)
+.....+.++++.+|.-+ ++.+..+.++...+.++++..+|.
T Consensus 30 ~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~ 78 (86)
T PF10785_consen 30 GATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSS 78 (86)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455666676666554 677777777777777877776553
No 337
>PTZ00370 STEVOR; Provisional
Probab=25.65 E-value=3.8e+02 Score=24.02 Aligned_cols=9 Identities=11% Similarity=0.479 Sum_probs=3.9
Q ss_pred hHHhhhccc
Q 011308 277 KFSELISPR 285 (489)
Q Consensus 277 ~~~~~~~~~ 285 (489)
.+.++|.+.
T Consensus 114 ~~ee~fg~~ 122 (296)
T PTZ00370 114 TYEEMFGDE 122 (296)
T ss_pred HHHHHhcCc
Confidence 344445443
No 338
>COG1288 Predicted membrane protein [Function unknown]
Probab=25.60 E-value=6.2e+02 Score=24.52 Aligned_cols=98 Identities=11% Similarity=0.094 Sum_probs=48.6
Q ss_pred hhhhHHHHHHHHHHhhhhhH--HHHHHHHHHHhhc------ccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHH
Q 011308 122 QLCALPMIIGASMSAITKNL--WGMLLGRLFVGTG------MGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVA 193 (489)
Q Consensus 122 ~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~------~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~ 193 (489)
+.-.++....+++..+++.. +..++...+.++. .+...-...+=++|...- .|..+..-++.+.++-..+.
T Consensus 358 i~dTiL~~~~~~lsgls~~~f~i~mli~~~~l~f~VpS~SG~A~ltMPImAPLaD~vgv-~RqvvV~Afq~g~G~~n~I~ 436 (481)
T COG1288 358 ILDTILNYLASLLSGLSSAVFAIGMLIFQALLNFFVPSGSGLAVLTMPIMAPLADLVGV-PRQVVVLAFQLGDGFSNIIA 436 (481)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHheEEEeCCCchhHhhchhhhhhHHhcCC-CHHHhhhhhhhcchhhheec
Confidence 44456666677777766543 2344455555542 222222233345666533 46666666666666655555
Q ss_pred HHhh-------cccccccchHHHHHHHhHHHHHH
Q 011308 194 LFVG-------LPAKEILGWWRICFWVATIPAAF 220 (489)
Q Consensus 194 ~~~~-------~~l~~~~~~Wr~~f~~~~~~~~~ 220 (489)
|.=+ ..=.++..|||+..=...+..++
T Consensus 437 PTSg~~ma~La~~~i~y~~W~Kfv~pl~~i~~li 470 (481)
T COG1288 437 PTSGLLMATLAMARVPYGTWLKFVAPLLGILFLI 470 (481)
T ss_pred CchHHHHHHHHHccCChhHHHHHHHHHHHHHHHH
Confidence 4422 11123334466655444444433
No 339
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.70 E-value=2.9e+02 Score=30.94 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=8.0
Q ss_pred HHHHHHHhhcccccccc
Q 011308 189 GILVALFVGLPAKEILG 205 (489)
Q Consensus 189 G~~i~~~~~~~l~~~~~ 205 (489)
|.++|..++..+....|
T Consensus 143 GGIIG~lLs~lL~~LfG 159 (1355)
T PRK10263 143 GGVIGSLLSTTLQPLLH 159 (1355)
T ss_pred cchHHHHHHHHHHHHHh
Confidence 44455555444444443
No 340
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=23.52 E-value=27 Score=30.64 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHhhhcccCCC
Q 011308 464 IYVKRNVMETK 474 (489)
Q Consensus 464 ~~~~~~~~~~~ 474 (489)
+++|.+..+++
T Consensus 179 iLIWlY~H~~~ 189 (381)
T PF05297_consen 179 ILIWLYVHDQR 189 (381)
T ss_dssp -----------
T ss_pred HHHHHHhcCCC
Confidence 34444555544
No 341
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=23.37 E-value=4.6e+02 Score=22.21 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=31.1
Q ss_pred CCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHH
Q 011308 399 GAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL-ILYTIFGSFCFLAVIY 465 (489)
Q Consensus 399 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~~~~~~~~~ 465 (489)
+..|....+..+. ++++|-+..--........-.+....+..+.+.+|.. ..|-+.+++.+....+
T Consensus 22 g~ipvfl~lt~~~-~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~ 88 (201)
T TIGR00427 22 GNIPIFISLTEYY-TAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAM 88 (201)
T ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3334555455555 4444433322222333333334445555666777743 3455666555544433
No 342
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=23.25 E-value=3.1e+02 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308 334 NLSGSIIAMILMDKLGRRVLLLGSFLG 360 (489)
Q Consensus 334 ~~~~~~~~g~l~d~~~~~~~~~~~~~~ 360 (489)
.++|.+++-|+=++++..+.....+++
T Consensus 56 il~G~~lG~WLD~~~~t~~~~tl~~ll 82 (100)
T TIGR02230 56 TLLGVAVGIWLDRHYPSPFSWTLTMLI 82 (100)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 344555555554456665544333333
No 343
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=23.19 E-value=73 Score=20.77 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=15.3
Q ss_pred HHHHHHHhHHHHH----HHHHHhhcccCCh
Q 011308 207 WRICFWVATIPAA----FLALFMEFCAESP 232 (489)
Q Consensus 207 Wr~~f~~~~~~~~----~~~~~~~~~~e~~ 232 (489)
+|..|.+..+... +-+++++.+|+.|
T Consensus 31 vRl~~v~l~~~~~~~~l~Y~~~w~~lP~~~ 60 (61)
T PF04024_consen 31 VRLIFVVLTFFTGGGILLYLILWLLLPKEP 60 (61)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCCCC
Confidence 7888887666432 2233445577654
No 344
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=21.58 E-value=3.3e+02 Score=25.71 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhhhC
Q 011308 332 IANLSGSIIAMILMDKLG 349 (489)
Q Consensus 332 ~~~~~~~~~~g~l~d~~~ 349 (489)
+..++.....|++..|.+
T Consensus 6 i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 6 ILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 444555566677777654
No 345
>PRK10995 inner membrane protein; Provisional
Probab=20.65 E-value=5.5e+02 Score=22.10 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=32.3
Q ss_pred CCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHh
Q 011308 400 AGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL-ILYTIFGSFCFLAVIYV 466 (489)
Q Consensus 400 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~-~~~~~~~~~~~~~~~~~ 466 (489)
..|....+..+..+++ |-+..--..........+....+..+.+.+|.. ..+-+.+++.+....+-
T Consensus 24 ~~pif~~lt~~~~~~~-r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ 90 (221)
T PRK10995 24 TVALFLGLSGNMTPEE-RNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFR 90 (221)
T ss_pred hHHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3345555555554433 333222233333333445555566667777743 35666666555444433
Done!