Query 011308
Match_columns 489
No_of_seqs 499 out of 1418
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 05:27:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.9E-46 6.5E-51 367.6 39.1 434 47-488 8-481 (491)
2 3o7q_A L-fucose-proton symport 100.0 5.2E-39 1.8E-43 310.1 26.3 371 47-465 22-428 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 5.5E-40 1.9E-44 318.2 19.4 398 47-470 24-434 (451)
4 4aps_A DI-OR tripeptide H+ sym 100.0 3.3E-35 1.1E-39 287.7 20.6 417 55-476 17-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 2.8E-35 9.6E-40 277.8 9.5 354 54-455 3-362 (375)
6 2cfq_A Lactose permease; trans 100.0 2.8E-32 9.5E-37 260.5 7.9 380 61-477 17-407 (417)
7 2xut_A Proton/peptide symporte 100.0 4E-30 1.4E-34 253.7 15.7 163 62-227 23-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.6 1.7E-14 5.7E-19 139.1 12.4 172 54-228 255-433 (451)
9 2cfq_A Lactose permease; trans 99.4 4.6E-13 1.6E-17 127.4 8.5 141 91-232 262-404 (417)
10 3o7q_A L-fucose-proton symport 99.4 1E-12 3.4E-17 126.1 9.5 155 65-224 272-428 (438)
11 4aps_A DI-OR tripeptide H+ sym 99.3 3.8E-12 1.3E-16 124.0 10.9 156 68-227 300-470 (491)
12 2gfp_A EMRD, multidrug resista 99.3 4.1E-12 1.4E-16 119.2 8.0 162 305-475 16-180 (375)
13 2xut_A Proton/peptide symporte 99.3 4.1E-11 1.4E-15 117.8 14.1 140 321-468 51-197 (524)
14 4gc0_A D-xylose-proton symport 99.3 3E-12 1E-16 124.8 5.3 168 61-232 287-467 (491)
15 2g9p_A Antimicrobial peptide l 44.9 6.4 0.00022 18.5 0.5 14 107-120 2-15 (26)
16 2dw3_A Intrinsic membrane prot 24.0 1.6E+02 0.0053 19.3 5.2 31 446-476 30-60 (77)
17 4dve_A Biotin transporter BIOY 21.6 1.6E+02 0.0054 23.7 5.3 26 94-119 99-124 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.9e-46 Score=367.56 Aligned_cols=434 Identities=32% Similarity=0.517 Sum_probs=341.5
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccc------cchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSG------STMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA 120 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~ 120 (489)
++.+.+.++.+++.++.++|.+.++..+|.+.++++.+. ++...|++.+++.+|..+|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 444566666778889999999999999999988875432 22335899999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHh------------------hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHH
Q 011308 121 FQLCALPMIIGASMSA------------------ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSST 182 (489)
Q Consensus 121 l~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~ 182 (489)
+.++.+++.+++++++ +++|+++++++|+++|+|.|...+....+++|+.|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 9999999999999998 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccc-------chHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCC
Q 011308 183 QIAACLGILVALFVGLPAKEIL-------GWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGL 255 (489)
Q Consensus 183 ~~~~~~G~~i~~~~~~~l~~~~-------~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (489)
+.+..+|.++++.++..+.... .+||+.+.+..++.++..+..+++||+|+|+..+++.+++++.+++..+..
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence 9999999999988876654322 139999999999988888888899999999999999999998887765433
Q ss_pred CchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHH
Q 011308 256 HVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGI 332 (489)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 332 (489)
....+..+..+....++ +....... ...+..........+..+.....+.+|.+.+.+..+.+... .....++
T Consensus 248 ~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (491)
T 4gc0_A 248 LATQAVQEIKHSLDHGR-KTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV 323 (491)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhh-hhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH
Confidence 22222221111111111 11111111 22333445555556666677888888899888887766544 4456678
Q ss_pred HHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccC
Q 011308 333 ANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIF 412 (489)
Q Consensus 333 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (489)
..+++.++++++.||+|||+.+..+.....++++.+...... ....+..+....++..+++.+..++.+.+.+|++
T Consensus 324 ~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~f 399 (491)
T 4gc0_A 324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF 399 (491)
T ss_dssp HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 888999999999999999999998888887777666554332 2223344555666667777788888888999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHhhC
Q 011308 413 PNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE------QLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALL 486 (489)
Q Consensus 413 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (489)
|++.|+++.|+.+.++++++++++.+.+.+.+ ..+....|++++++++++.++.+++.||||++++||+|+.++
T Consensus 400 Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 400 PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 99999999999999999999999988876644 345667888999999999999999999999999999998776
Q ss_pred CC
Q 011308 487 PQ 488 (489)
Q Consensus 487 ~~ 488 (489)
++
T Consensus 480 ~~ 481 (491)
T 4gc0_A 480 PE 481 (491)
T ss_dssp --
T ss_pred CC
Confidence 54
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=5.2e-39 Score=310.13 Aligned_cols=371 Identities=13% Similarity=0.086 Sum_probs=287.2
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
++++..+..+++..+..+++.....+.+|.+.+++|++.++. |++.+.+.+++.++++++|+++||+|||++++.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Confidence 344556667777788888888899999999999999988887 999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc-c
Q 011308 127 PMIIGASMS---AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK-E 202 (489)
Q Consensus 127 ~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-~ 202 (489)
+.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999 889999999999999999999999999999999999999999999999999999999999999998 5
Q ss_pred ccch------------------------HHHHHHHhHHHHHHHHHHhhc--ccCChhHHHhcCChHHHHHHHHHHhCCCC
Q 011308 203 ILGW------------------------WRICFWVATIPAAFLALFMEF--CAESPHWLFKRGRGAEAEAELERLFGGLH 256 (489)
Q Consensus 203 ~~~~------------------------Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (489)
..+. ||+.|++.++..++..+..++ .||+++. +
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~------------------ 238 (438)
T 3o7q_A 180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N------------------ 238 (438)
T ss_dssp SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---C------------------
T ss_pred ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---c------------------
Confidence 5554 899998877776665554433 3554320 0
Q ss_pred chHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHH-HHhc-CCCCCc---hhHHHH
Q 011308 257 VKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTV-FKNA-GVPSDS---GNICVG 331 (489)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~---~~~~~~ 331 (489)
++++++++...+++++++++.++...+..++... .......+.+.+ +++. +.+... ......
T Consensus 239 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 305 (438)
T 3o7q_A 239 ---------HSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM 305 (438)
T ss_dssp ---------CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred ---------cccccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence 0111122334567788888887776666555444 334444556666 5554 666544 555667
Q ss_pred HHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhccc
Q 011308 332 IANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEI 411 (489)
Q Consensus 332 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (489)
++.+++.++.+++.||++||+.+..+.++..++.+++.+.... + ......+.+.+.+ ...+....+..|.
T Consensus 306 ~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~g~~~~-~~~~~~~~~~~~~ 375 (438)
T 3o7q_A 306 VCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH--------V-GLIALTLCSAFMS-IQYPTIFSLGIKN 375 (438)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH--------H-HHHHHHHHHHHHT-THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc--------H-HHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence 8888999999999999999999988888777776655543221 1 2333344444433 3345667777888
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHH
Q 011308 412 FPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVIY 465 (489)
Q Consensus 412 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 465 (489)
+|++ ++.+.++.. ...+++.++|.+.|.+.+..| +...|.+.+++.++..++
T Consensus 376 ~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 376 LGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp CGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred cccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 8866 888888877 678999999999999999999 888888766555544443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=5.5e-40 Score=318.20 Aligned_cols=398 Identities=14% Similarity=0.078 Sum_probs=297.0
Q ss_pred cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308 47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL 126 (489)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~ 126 (489)
+++++.+..++++.+...++...+.+.+|.+.+++ .+.++. |++.+++.++..++++++|+++||+|||+++..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 34567777888888999999999999999999999 888887 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh----hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308 127 PMIIGASMSAI----TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE 202 (489)
Q Consensus 127 ~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~ 202 (489)
+.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ccchHHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhh
Q 011308 203 ILGWWRICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSEL 281 (489)
Q Consensus 203 ~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (489)
..+.||+.|++.+++.++..+. .+++||+|+....+++.+..+ . .+.+...+.+++....+...++.
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN----------D--YPDDYNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC----------C---------------CCTHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc----------c--ccccchhhhhcccccccchHHHH
Confidence 5543899999998887766554 455788775321111110000 0 00000000011111122224667
Q ss_pred hccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhh--CCchhHH
Q 011308 282 ISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKL--GRRVLLL 355 (489)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~ 355 (489)
++++.++...+..++..+ .......+.+.++++ .+.+... .....+++.+++.++.+++.||+ ++|+.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 324 (451)
T 1pw4_A 249 LPNKLLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG 324 (451)
T ss_dssp SSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 777777655555444443 344556667777766 5666554 55566788899999999999999 8888877
Q ss_pred HHHHHHH-HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHH-HHH
Q 011308 356 GSFLGMA-IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWV-INF 433 (489)
Q Consensus 356 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~ 433 (489)
.+..+.. ++++++.+. ...+.+.......+.+.+.+. ..+....+..|.+|++.|+++.|+.+...++ |..
T Consensus 325 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~ 397 (451)
T 1pw4_A 325 VFFMTLVTIATIVYWMN------PAGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV 397 (451)
T ss_dssp HHHHHHHHHHHHHTTSC------CTTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh------cccCHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence 6665554 443333221 112233333344444443332 2344456889999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcc
Q 011308 434 FVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNV 470 (489)
Q Consensus 434 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
++|.+.|.+.+..|+...|.+.+++++++.++.+...
T Consensus 398 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 398 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888776665443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=3.3e-35 Score=287.74 Aligned_cols=417 Identities=15% Similarity=0.097 Sum_probs=261.0
Q ss_pred HHHHHhhhhccccccccchhh-hhhhc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHH
Q 011308 55 VAIISSFLFGYHLGVVNETLE-SISLD-----LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALP 127 (489)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~-~i~~~-----~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~ 127 (489)
.+++..+...+......+.++ .+.++ +|.+.++. |++.+.+.++..++++++|+++|| +|||+++..+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 333344444444433433333 34444 89887777 999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccc--hhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308 128 MIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYV--RGAYGSSTQIAACLGILVALFVGLPAKEILG 205 (489)
Q Consensus 128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~ 205 (489)
.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999988 7788888999999999999999999999888
Q ss_pred hHHHHHHHhHHHHHHHHHHhhcc-cCChh----HHHhcCChHHHHHHHHH----------------HhCCCCchHHHHHH
Q 011308 206 WWRICFWVATIPAAFLALFMEFC-AESPH----WLFKRGRGAEAEAELER----------------LFGGLHVKYSMAEL 264 (489)
Q Consensus 206 ~Wr~~f~~~~~~~~~~~~~~~~~-~e~~~----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 264 (489)
||+.|++.++..++..+..++. ++..+ ....+.+.++.++..+. ..+..+.+......
T Consensus 175 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (491)
T 4aps_A 175 -YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLL 253 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhh
Confidence 9999999877766655544332 21110 00001112222221111 01111110000000
Q ss_pred hh---------hhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHH
Q 011308 265 SK---------SERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANL 335 (489)
Q Consensus 265 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (489)
.. .....++......+..+............+............+.+.....+......+.......+..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (491)
T 4aps_A 254 TIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIM 333 (491)
T ss_dssp HHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHH
Confidence 00 000000000000000011111112222222233222233333333333222222334456777788888
Q ss_pred HHHHHHHHHHhhhCCchhHH-----HHHHHHHHHHHHHHHHhhccc-CCCcchhHHHHHHHHHHHHHhcCCCcchhhhhc
Q 011308 336 SGSIIAMILMDKLGRRVLLL-----GSFLGMAIAMGVQAIAATSFV-SSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLS 409 (489)
Q Consensus 336 ~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (489)
++.++.+++.||++||+... .+..+.+++.+++........ ....+.+.......+.+.+.+. ..+....++.
T Consensus 334 ~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~ 412 (491)
T 4aps_A 334 LYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEML-ISPVGLSVTT 412 (491)
T ss_dssp HHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 99999999999999886544 555555555555444332111 1112334444445555555443 3456677899
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCC
Q 011308 410 EIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGK 476 (489)
Q Consensus 410 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (489)
|.+|++.|+++.|+.+...++|..++|.+.+.+.+ .++...|.+.+++++++.++.+...++.+++
T Consensus 413 ~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 413 KLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887655 4677788888888888777777666655543
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=2.8e-35 Score=277.85 Aligned_cols=354 Identities=14% Similarity=0.087 Sum_probs=261.0
Q ss_pred HHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308 54 LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~ 133 (489)
..+++..++..++.....+.+|.+.+++|.+.++. |++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 45566777788888889999999999999988877 9999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308 134 MSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV 213 (489)
Q Consensus 134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~ 213 (489)
+.+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888 9999999
Q ss_pred hHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308 214 ATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI 292 (489)
Q Consensus 214 ~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (489)
.++..++..+. .+++||+++. ++ ++++...++++.+++|.++...+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 206 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPV---DA------------------------------PRTRLLTSYKTLFGNSGFNCYLL 206 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTT---TC------------------------------CCCCTTTCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcccCCC---Cc------------------------------ccccHHHHHHHHhcCcchHHHHH
Confidence 88887777663 4557877541 00 00112233455666776666555
Q ss_pred hHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCC---chhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH-HHHHHHH
Q 011308 293 GSTLFALQQLSGINAVFYFSSTVFKN-AGVPSD---SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG-MAIAMGV 367 (489)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~ 367 (489)
..++...... ....+.+.++++ .+.+.. .......++.+++.++.+++.||.+++ ...+... ...+...
T Consensus 207 ~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~ 280 (375)
T 2gfp_A 207 MLIGGLAGIA----AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLM 280 (375)
T ss_dssp HHHHHHHHHH----HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 5554444322 233333333222 233322 245555677778888888888887762 2222222 2222111
Q ss_pred HHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308 368 QAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG 447 (489)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 447 (489)
+...... ..+.+.......+.+.+.+.. .+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+..+
T Consensus 281 ~~~~~~~----~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 281 WIPDWFG----VMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp SHHHHHH----HHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHhhhc----cccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 1111100 012233334455555555543 4566668889988 789999999999999999999999999988777
Q ss_pred cchhhHHH
Q 011308 448 PLILYTIF 455 (489)
Q Consensus 448 ~~~~~~~~ 455 (489)
+...+...
T Consensus 355 ~~~~~~~~ 362 (375)
T 2gfp_A 355 GSLGLLMT 362 (375)
T ss_dssp HHHHHHHH
T ss_pred ccHHHHHH
Confidence 76555543
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=2.8e-32 Score=260.51 Aligned_cols=380 Identities=13% Similarity=0.064 Sum_probs=237.0
Q ss_pred hhhccccccccchhhhh-hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH---HHHh
Q 011308 61 FLFGYHLGVVNETLESI-SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA---SMSA 136 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~---~~~~ 136 (489)
+..........+.+|.+ .+++|.+..+. |++.+.+.+++.++++++|+++||+|||++++.+..+++++. ....
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~ 94 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444556667764 55689988888 999999999999999999999999999999998887765532 2223
Q ss_pred hhhhH-HHHHHHHHHHhhcccchhhhHHHHHHhcCCc--cchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308 137 ITKNL-WGMLLGRLFVGTGMGIGPAVAALYVSEVSPA--YVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV 213 (489)
Q Consensus 137 ~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~ 213 (489)
+++.. ..+...+++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+ .+ ||+.|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~-~~~~f~~ 172 (417)
T 2cfq_A 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN-NQFVFWL 172 (417)
T ss_dssp HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC-SHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc-hhHHHHH
Confidence 33222 1234566777776666555555555555443 456777777777788899999999998876 45 8999998
Q ss_pred hHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308 214 ATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG 293 (489)
Q Consensus 214 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (489)
.++..++..+..++.+|+++. +.+.++ .+++++++....+++++++++.++...+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (417)
T 2cfq_A 173 GSGCALILAVLLFFAKTDAPS---SATVAN---------------------AVGANHSAFSLKLALELFRQPKLWFLSLY 228 (417)
T ss_dssp TTTTTTTHHHHSCSSCCCCSC---SSCSSS---------------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccccc---cccccc---------------------ccccccccccHHHHHHHhcCCchhhHHHH
Confidence 877765555554444443310 000000 00000011122345567777776654443
Q ss_pred HHHHHhhhhcchhHHHHhHHHHHHhcCCCCC---chhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHH
Q 011308 294 STLFALQQLSGINAVFYFSSTVFKNAGVPSD---SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAI 370 (489)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 370 (489)
.+...........+.+.|....++..+.+.. ....+..++.+++.++.++++||++||+.+..+..+.+++.+.+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 229 VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 3322221111112223333222111111111 1333445677788999999999999999888777666665444322
Q ss_pred HhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308 371 AATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV-CMAVHWVINFFVGLLFLRLLEQLGPL 449 (489)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~ 449 (489)
. .+.+..+....+.+.+... ..+....+++|.+|++.|+++.++ ++....+|+.++|.+.|.+.+..|+.
T Consensus 309 ~--------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~ 379 (417)
T 2cfq_A 309 A--------TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ 379 (417)
T ss_dssp C--------CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHH
T ss_pred h--------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcH
Confidence 1 1112222222222322221 112345688999999999999999 48888999999999999999988888
Q ss_pred hhhHHHHHHHHHHHHHhhhcccCCCCCC
Q 011308 450 ILYTIFGSFCFLAVIYVKRNVMETKGKT 477 (489)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (489)
..|.+.+++++++.++.+...+|+++.+
T Consensus 380 ~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 380 GAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 8898888888888777666666665544
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=4e-30 Score=253.71 Aligned_cols=163 Identities=15% Similarity=0.205 Sum_probs=140.6
Q ss_pred hhccccccccchhh-hhhhccc------ccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-CchhHhhhhhHHHHHHHH
Q 011308 62 LFGYHLGVVNETLE-SISLDLG------FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-GRRRAFQLCALPMIIGAS 133 (489)
Q Consensus 62 ~~~~~~~~~~~~~~-~i~~~~~------~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~ 133 (489)
+..+......+.++ .+.+++| .+..+. |++.+.+.++..++++++|+++||+ |||+++..+.++.+++.+
T Consensus 23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~ 100 (524)
T 2xut_A 23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA 100 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33333333344444 4667888 888877 9999999999999999999999999 999999999999999999
Q ss_pred HHhhhh-hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHH---HHHHHHHHHHHHHHhhcccccccchHHH
Q 011308 134 MSAITK-NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSS---TQIAACLGILVALFVGLPAKEILGWWRI 209 (489)
Q Consensus 134 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~i~~~~~~~l~~~~~~Wr~ 209 (489)
+.++++ +++.++++|+++|++.+...+...+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.+..+ ||+
T Consensus 101 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~ 179 (524)
T 2xut_A 101 FLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAV 179 (524)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHH
T ss_pred HHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHH
Confidence 999999 999999999999999999999999999999999999876666 889999999999999999998888 999
Q ss_pred HHHHhHHHHHHHHHHhhc
Q 011308 210 CFWVATIPAAFLALFMEF 227 (489)
Q Consensus 210 ~f~~~~~~~~~~~~~~~~ 227 (489)
.|++.++..++..+..++
T Consensus 180 ~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 180 AFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988877666555443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.56 E-value=1.7e-14 Score=139.13 Aligned_cols=172 Identities=14% Similarity=0.137 Sum_probs=141.7
Q ss_pred HHHHHHhhhhccccccccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc--CchhHhhhhhHHHH-
Q 011308 54 LVAIISSFLFGYHLGVVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI--GRRRAFQLCALPMI- 129 (489)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~- 129 (489)
....+..++............|.+.++ +|.+..+. +++.+...++..++.++.|++.||+ |||+.+..+..+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 332 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 334444444444455556667777666 78877766 9999999999999999999999999 99999988877776
Q ss_pred HHHHHHhhh--hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHH-HHHHHHHhhcccccccch
Q 011308 130 IGASMSAIT--KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACL-GILVALFVGLPAKEILGW 206 (489)
Q Consensus 130 i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~~~~~l~~~~~~ 206 (489)
++.++..+. .+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g- 411 (451)
T 1pw4_A 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG- 411 (451)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 666666665 36778888889999998888888899999999999999999999999999 99999999999999888
Q ss_pred HHHHHHHhHHHHHHHHHHhhcc
Q 011308 207 WRICFWVATIPAAFLALFMEFC 228 (489)
Q Consensus 207 Wr~~f~~~~~~~~~~~~~~~~~ 228 (489)
|+..|++.++..++..+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888777766655443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.39 E-value=4.6e-13 Score=127.42 Aligned_cols=141 Identities=13% Similarity=0.044 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC
Q 011308 91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS 170 (489)
Q Consensus 91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 170 (489)
|+..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 341 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF 341 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 77888888888899999999999999999999999888888888888888888888888888887777777788999999
Q ss_pred CccchhhHHHH-HHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc-ccCCh
Q 011308 171 PAYVRGAYGSS-TQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF-CAESP 232 (489)
Q Consensus 171 ~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~ 232 (489)
|++.|+.+.++ ++....+|..++|.+++.+.+..+ ++..|.+.++..++..+..++ .+|.+
T Consensus 342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999888 478888999999999999998777 899999888877776655433 56543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.37 E-value=1e-12 Score=126.12 Aligned_cols=155 Identities=12% Similarity=0.008 Sum_probs=124.1
Q ss_pred cccccccchhhhh-hhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHH
Q 011308 65 YHLGVVNETLESI-SLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLW 142 (489)
Q Consensus 65 ~~~~~~~~~~~~i-~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 142 (489)
..........|.+ .++ +|.+..+. +++.+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (438)
T 3o7q_A 272 GAQTACWSYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV 349 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 3333444555655 544 48877766 9999999999999999999999999999999999999999999888888876
Q ss_pred HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHH
Q 011308 143 GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLA 222 (489)
Q Consensus 143 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~ 222 (489)
.++.. ++.|++.+...+....+..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..++++..|++.++..++..
T Consensus 350 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 350 GLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 65544 8889999999999999999999866 888888777 55689999999999999887646888887655544444
Q ss_pred HH
Q 011308 223 LF 224 (489)
Q Consensus 223 ~~ 224 (489)
+.
T Consensus 427 ~~ 428 (438)
T 3o7q_A 427 IF 428 (438)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.33 E-value=3.8e-12 Score=124.04 Aligned_cols=156 Identities=10% Similarity=-0.009 Sum_probs=121.3
Q ss_pred ccccchhhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhh-----hhhHHHHHHHHHHhhhh--
Q 011308 68 GVVNETLESISL-DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQ-----LCALPMIIGASMSAITK-- 139 (489)
Q Consensus 68 ~~~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~i~~~~~~~~~-- 139 (489)
......+|.+.+ .++.+..+. +++.+...++..++.++.|++.||+|||+... .+.++.+++.++..+..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (491)
T 4aps_A 300 EQGSVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGAL 377 (491)
T ss_dssp GGGGTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred hhccHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445554544 356554455 78888889999999999999999999987766 77777777776666643
Q ss_pred -------hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHH
Q 011308 140 -------NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFW 212 (489)
Q Consensus 140 -------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~ 212 (489)
+.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.. +.+.|+
T Consensus 378 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~~~~ 455 (491)
T 4aps_A 378 YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVAYFS 455 (491)
T ss_dssp CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHH
Confidence 67778888899999999989999999999999999999999999999999999999999887654 566777
Q ss_pred HhHHHHHHHHHHhhc
Q 011308 213 VATIPAAFLALFMEF 227 (489)
Q Consensus 213 ~~~~~~~~~~~~~~~ 227 (489)
+.++..++..+..++
T Consensus 456 ~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 456 YFGLGSVVLGIVLVF 470 (491)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776666555444
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.29 E-value=4.1e-12 Score=119.19 Aligned_cols=162 Identities=12% Similarity=0.043 Sum_probs=123.7
Q ss_pred hhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011308 305 INAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGA 381 (489)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (489)
........+.+.++.+.+... ......++..++.++.|+++||+|||+.+..+..+..++.++..+..+.
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~------- 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL------- 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH-------
Confidence 444455567777777877765 4455667888999999999999999999999999888888777765432
Q ss_pred hhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 011308 382 LSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFL 461 (489)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 461 (489)
+..+....+.+.+.+. ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|.+.+++.++
T Consensus 89 -~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (375)
T 2gfp_A 89 -TVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG 166 (375)
T ss_dssp -HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 2334444444444432 34566678899999899999999999999999999999999999888999999988888887
Q ss_pred HHHHhhhcccCCCC
Q 011308 462 AVIYVKRNVMETKG 475 (489)
Q Consensus 462 ~~~~~~~~~~~~~~ 475 (489)
..+...+..||+++
T Consensus 167 ~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 167 VTFSMARWMPETRP 180 (375)
T ss_dssp HHCCCCCSSCCCST
T ss_pred HHHHHHHHCcccCC
Confidence 77655555666543
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.26 E-value=4.1e-11 Score=117.76 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=106.7
Q ss_pred CCCCc---hhHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHH
Q 011308 321 VPSDS---GNICVGIANLSGSIIAMILMDKL-GRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTF 396 (489)
Q Consensus 321 ~~~~~---~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
.+... ......++..++.++.|+++||+ |||+.+..+.++..++.+++.+.. .+.+..+....+.+.+.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~ 123 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-------HSVQGFYTGLFLIALGS 123 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-------SCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhc
Confidence 66555 45556678889999999999999 999999988888888777766543 12233444455555554
Q ss_pred hcCCCcchhhhhcccCChhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308 397 SLGAGPVPSLLLSEIFPNRIRAKAMAV---CMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKR 468 (489)
Q Consensus 397 ~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 468 (489)
+ ...+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.+.+..||+..|.+.+++.+++.++.+.
T Consensus 124 ~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 124 G-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp H-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred c-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3446667789999999999776666 899999999999999999999889999999888877776655543
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.25 E-value=3e-12 Score=124.76 Aligned_cols=168 Identities=18% Similarity=0.089 Sum_probs=116.0
Q ss_pred hhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh-
Q 011308 61 FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK- 139 (489)
Q Consensus 61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~- 139 (489)
+........+....|.+.++.+.+.... ........+...++.++.+++.||+|||+.++.+.....++.+..+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 3333333444555677777777655544 5666677788889999999999999999999999888887776654421
Q ss_pred ----hHHHHHH-HHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc------cchHH
Q 011308 140 ----NLWGMLL-GRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI------LGWWR 208 (489)
Q Consensus 140 ----~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~------~~~Wr 208 (489)
+...+.. .-+..+++ ....+....+.+|.+|.+.|++++++......+|..+++.+...+.+. .+ +.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~~ 442 (491)
T 4gc0_A 365 TQAPGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-NG 442 (491)
T ss_dssp TTCCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-TC
T ss_pred cccchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hh
Confidence 2222222 22222333 234467788999999999999999999999999988888776655432 22 45
Q ss_pred HHHHHhHHHHHHHHHH-hhcccCCh
Q 011308 209 ICFWVATIPAAFLALF-MEFCAESP 232 (489)
Q Consensus 209 ~~f~~~~~~~~~~~~~-~~~~~e~~ 232 (489)
+.|++.++++++..+. ++++||+.
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHheecCCC
Confidence 6777777777766655 45689985
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=44.89 E-value=6.4 Score=18.55 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=10.7
Q ss_pred HHHHhhcccCchhH
Q 011308 107 FSGWIADGIGRRRA 120 (489)
Q Consensus 107 ~~g~l~dr~Grr~~ 120 (489)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35788889998864
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=23.98 E-value=1.6e+02 Score=19.27 Aligned_cols=31 Identities=10% Similarity=-0.259 Sum_probs=16.1
Q ss_pred hccchhhHHHHHHHHHHHHHhhhcccCCCCC
Q 011308 446 LGPLILYTIFGSFCFLAVIYVKRNVMETKGK 476 (489)
Q Consensus 446 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (489)
.||..++.+...+.+++.-++-..+||..++
T Consensus 30 Ag~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 30 AGWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 3455455444444444444444567776544
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=21.63 E-value=1.6e+02 Score=23.73 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCchh
Q 011308 94 VSTCLGGAFVGSMFSGWIADGIGRRR 119 (489)
Q Consensus 94 ~s~~~~~~~~~~~~~g~l~dr~Grr~ 119 (489)
..-|.+|+.++..+.|++.||..+++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~~ 124 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKITT 124 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccc
Confidence 34567788888999999999876543
Done!