BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011309
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 85.5 bits (210), Expect = 6e-17, Method: Composition-based stats.
Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 53/175 (30%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+PLH AA GH E+V LLLE GADVN+++ +GRT LH AA NGH+ ++L
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDK----------NGRTPLHLAARNGHLEVVKL 53
Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
+ +++ D VN G T LH+AA NG+
Sbjct: 54 L--------------------------LEAGAD-------VNAKDKNGRTPLHLAARNGH 80
Query: 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
+ V+LLL+ A+V+A + G TPLH AA G+L+ ++LL GA
Sbjct: 81 LEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 43/151 (28%)
Query: 87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 146
+GRT LH AA NGH+ ++L+ +++ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLL--------------------------LEAGAD------- 27
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN G T LH+AA NG+ + V+LLL+ A+V+A + G TPLH AA
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAAR 77
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
G+L+ ++LL GA + + NG PL +A
Sbjct: 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 64/222 (28%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G+RL+ AA +G+ K L++ + + G +PLH+AA +GH EIV LL+ GAD
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHYAAKEGHKEIVKLLISKGAD 62
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+++ GRT LH+AA GH ++L+++
Sbjct: 63 VNAKDS----------DGRTPLHYAAKEGHKEIVKLLIS--------------------K 92
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
G+ V +K G T LH AA G+ + V+LL+ A+V+ +
Sbjct: 93 GADVNAKDSD-------------GRTPLHYAAKEGHKEIVKLLISKGADVNT------SD 133
Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 232
D G TPL A GN + ++L +G GWL
Sbjct: 134 SD----GRTPLDLAREHGNEEIVKLLEKQG---------GWL 162
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 92/205 (44%), Gaps = 53/205 (25%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G+ + V L+ENGADVN+ + GRT LH+AA GH +
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDS----------DGRTPLHYAAKEGHKEIV 53
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
+L+++ G+ V +K G T LH AA
Sbjct: 54 KLLISK--------------------GADVNAKDSD-------------GRTPLHYAAKE 80
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V+LL+ A+V+A G TPLH+AA G+ + ++L+S+GA
Sbjct: 81 GHKEIVKLLISKGADVNAKD----------SDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
+ + +G PLD+AR G + LL
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 95/222 (42%), Gaps = 64/222 (28%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G+RL+ AA +G+ K L++ + + G +PLH AA GH E+V LL+ GAD
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHHAAENGHKEVVKLLISKGAD 62
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+++ GRT LH AA NGH ++L+++
Sbjct: 63 VNAKDS----------DGRTPLHHAAENGHKEVVKLLIS--------------------K 92
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
G+ V +K G T LH AA NG+ + V+LL+ A+V+
Sbjct: 93 GADVNAKDSD-------------GRTPLHHAAENGHKEVVKLLISKGADVNTSDS----- 134
Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 232
G TPL A GN + ++L +G GWL
Sbjct: 135 -----DGRTPLDLAREHGNEEVVKLLEKQG---------GWL 162
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 90/198 (45%), Gaps = 53/198 (26%)
Query: 52 AAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADF 111
AA G+ + V L+ENGADVN+ + GRT LH AA NGH ++L+++
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDS----------DGRTPLHHAAENGHKEVVKLLISK- 59
Query: 112 VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 171
G+ V +K G T LH AA NG+ + V+
Sbjct: 60 -------------------GADVNAKDSD-------------GRTPLHHAAENGHKEVVK 87
Query: 172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 231
LL+ A+V+A G TPLH AA G+ + ++L+S+GA + + +G
Sbjct: 88 LLISKGADVNAKDS----------DGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGR 137
Query: 232 LPLDVARMWGRHWLEPLL 249
PLD+AR G + LL
Sbjct: 138 TPLDLAREHGNEEVVKLL 155
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
AA NG D V+ L++ A+V+A G TPLH AA G+ + ++L+S+G
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDS----------DGRTPLHHAAENGHKEVVKLLISKG 60
Query: 221 ASRMSLNCNGWLPLDVARMWGRHWLEPLL--------APSSDAVMPRFHPS 263
A + + +G PL A G + LL A SD P H +
Sbjct: 61 ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 53/198 (26%)
Query: 52 AAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADF 111
AA G+ + V LLENGAD N+ + GRT LH+AA NGH ++L+++
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDS----------DGRTPLHYAAENGHKEIVKLLLS-- 58
Query: 112 VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 171
D +A K +DG T LH AA NG+ + V+
Sbjct: 59 ------------------------KGADPNA------KDSDG-RTPLHYAAENGHKEIVK 87
Query: 172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 231
LLL A+ +A G TPLH+AA G+ + ++LLS+GA + + +G
Sbjct: 88 LLLSKGADPNAKDS----------DGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGR 137
Query: 232 LPLDVARMWGRHWLEPLL 249
PLD+AR G + LL
Sbjct: 138 TPLDLAREHGNEEIVKLL 155
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 97/226 (42%), Gaps = 64/226 (28%)
Query: 7 CSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLE 66
S G+RL+ AA +G+ K LL+ N S G +PLH+AA GH EIV LLL
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLE-NGADPNASDSDG-RTPLHYAAENGHKEIVKLLLS 58
Query: 67 NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG 126
GAD N+++ GRT LH+AA NGH ++L+++
Sbjct: 59 KGADPNAKDS----------DGRTPLHYAAENGHKEIVKLLLS----------------- 91
Query: 127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 186
D +A K +D G T LH AA NG+ + V+LLL A+ +
Sbjct: 92 ---------KGADPNA------KDSD-GRTPLHYAAENGHKEIVKLLLSKGADPNTSD-- 133
Query: 187 YGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 232
G TPL A GN + ++L +G GWL
Sbjct: 134 --------SDGRTPLDLAREHGNEEIVKLLEKQG---------GWL 162
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 53/198 (26%)
Query: 52 AAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADF 111
AA G+ + V LLENGADVN+ + G+T LH AA NGH ++L+++
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDS----------DGKTPLHLAAENGHKEVVKLLLS-- 58
Query: 112 VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 171
D +A K +DG T LH+AA NG+ + V+
Sbjct: 59 ------------------------QGADPNA------KDSDG-KTPLHLAAENGHKEVVK 87
Query: 172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 231
LLL A+ +A G TPLH AA G+ + ++LLS+GA + + +G
Sbjct: 88 LLLSQGADPNAKDSD----------GKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGR 137
Query: 232 LPLDVARMWGRHWLEPLL 249
PLD+AR G + LL
Sbjct: 138 TPLDLAREHGNEEVVKLL 155
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 96/226 (42%), Gaps = 64/226 (28%)
Query: 7 CSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLE 66
S G+RL+ AA +G+ K LL+ + + G +PLH AA GH E+V LLL
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGADVNASDSDG--KTPLHLAAENGHKEVVKLLLS 58
Query: 67 NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG 126
GAD N+++ G+T LH AA NGH ++L+++
Sbjct: 59 QGADPNAKDS----------DGKTPLHLAAENGHKEVVKLLLS----------------- 91
Query: 127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 186
D +A K +D G T LH+AA NG+ + V+LLL A+ +
Sbjct: 92 ---------QGADPNA------KDSD-GKTPLHLAAENGHKEVVKLLLSQGADPNTSDSD 135
Query: 187 YGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 232
G TPL A GN + ++L +G GWL
Sbjct: 136 ----------GRTPLDLAREHGNEEVVKLLEKQG---------GWL 162
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 71.2 bits (173), Expect = 1e-12, Method: Composition-based stats.
Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 53/205 (25%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AAA G ++ V +L+ NGADVN+ + +G T LH AA NG + +
Sbjct: 6 LGKKLLEAAAAGQDDEVRILMANGADVNATDD----------NGLTPLHLAAANGQLEIV 55
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
+++ K+ D VN + GIT LH+AA +
Sbjct: 56 EVLL--------------------------KNGAD-------VNASDSAGITPLHLAAYD 82
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A AG TPLH AA G L+ +VLL GA
Sbjct: 83 GHLEIVEVLLKHGADVNAYD----------RAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
+ + G D++ G+ L +L
Sbjct: 133 AQDALGLTAFDISINQGQEDLAEIL 157
Score = 65.5 bits (158), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN D G+T LH+AA NG + V++LL A+V+A AG TPLH AA
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD----------SAGITPLHLAAY 81
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA + + GW PL +A + G+ +E LL +D
Sbjct: 82 DGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 45/172 (26%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AA G E ++L+ N + GL +PLH AAA G EIV +LL+NGAD
Sbjct: 7 GKKLLEAAAAGQDDEVRILM-ANGADVNATDDNGL-TPLHLAAANGQLEIVEVLLKNGAD 64
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+ + +G T LH AA +GH+ + ++
Sbjct: 65 VNASDS----------AGITPLHLAAYDGHLEIVEVL----------------------- 91
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 182
+K D VN G T LH+AAL+G + V++LL A+V+A
Sbjct: 92 ---LKHGAD-------VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AA DG ++LL + Y G +PLH AA G EIV +LL++GADVN+++
Sbjct: 79 AAYDGHLEIVEVLLKHGADVNAYDRAGW--TPLHLAALSGQLEIVEVLLKHGADVNAQDA 136
Query: 77 CG 78
G
Sbjct: 137 LG 138
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 88/198 (44%), Gaps = 30/198 (15%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
+ +PLH AA GH E+ LL+N A VN++ Q T LH AA GH +
Sbjct: 47 VETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ----------TPLHCAARIGHTNMV 96
Query: 105 RLVVADFV-PSVPFEVMNT--QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
+L++ + P++ +T I G +V + ++ A + K G T LH+A
Sbjct: 97 KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK---GFTPLHVA 153
Query: 162 ALNGYFDCVQLLL--DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 219
A G +LLL D H N + G TPLH A NL ++LL R
Sbjct: 154 AKYGKVRVAELLLERDAHPNAAGKN------------GLTPLHVAVHHNNLDIVKLLLPR 201
Query: 220 GASRMSLNCNGWLPLDVA 237
G S S NG+ PL +A
Sbjct: 202 GGSPHSPAWNGYTPLHIA 219
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 78/195 (40%), Gaps = 53/195 (27%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+PLH AA +GH E+VALLL A+ N N SG T LH A GHV +
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNK----------SGLTPLHLVAQEGHVPVADV 296
Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
++ V V+ G T LH+A+ G
Sbjct: 297 LIKHGV---------------------------------MVDATTRMGYTPLHVASHYGN 323
Query: 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 226
V+ LL A+V+A T G +PLH AA G+ +LL GAS +
Sbjct: 324 IKLVKFLLQHQADVNAKT----------KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 227 NCNGWLPLDVARMWG 241
+ +G PL +A+ G
Sbjct: 374 SSDGTTPLAIAKRLG 388
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 85/203 (41%), Gaps = 53/203 (26%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+PLH A+ GH IV LL+ GA N N + T LH AA GH +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSN----------VKVETPLHMAARAGHTEVAKY 65
Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
++ + K+K VN A T LH AA G+
Sbjct: 66 LLQN------------------------KAK---------VNAKAKDDQTPLHCAARIGH 92
Query: 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 226
+ V+LLL+ +AN + T AG TPLH AA G+++ LL + AS+ +
Sbjct: 93 TNMVKLLLENNANPNLATT----------AGHTPLHIAAREGHVETVLALLEKEASQACM 142
Query: 227 NCNGWLPLDVARMWGRHWLEPLL 249
G+ PL VA +G+ + LL
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELL 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 116/284 (40%), Gaps = 72/284 (25%)
Query: 17 AARDGDFVEAKMLLD--CNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR 74
AAR G K+LL+ NP LA +T G ++PLH AA +GH E V LLE A
Sbjct: 87 AARIGHTNMVKLLLENNANPNLA--TTAG--HTPLHIAAREGHVETVLALLEKEAS---- 138
Query: 75 NYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA-DFVPS-------VPFEVMNTQIEG 126
C +T+ G T LH AA G VR L++ D P+ P V
Sbjct: 139 QAC--MTK----KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 127 D-------RG--------DGSS---VKSKCDQSALSKFV-------NKAADGGITALHMA 161
D RG +G + + +K +Q +++ + N + G+T LH+A
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252
Query: 162 ALNGYFDCVQLLLDLHAN----------------------VSAVTFHYGTSMDLIG-AGS 198
A G+ + V LLL AN V+ V +G +D G
Sbjct: 253 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 312
Query: 199 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
TPLH A+ GN+K + LL A + G+ PL A G
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 356
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 155 ITALHMAALNGYFDCVQLLLDLHA--NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 212
+T LH+A+ G+ V+ LL A NVS V TPLH AA G+ +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV------------ETPLHMAARAGHTEV 62
Query: 213 CQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
+ LL A + + PL A G + LL
Sbjct: 63 AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + SG+T LH AA+ GH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDD----------SGKTPLHLAAIKGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K D +A K G T LH+AAL
Sbjct: 64 EVL--------------------------LKHGADVNAADKM-------GDTPLHLAALY 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A + G TPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKNGADVNATDTY----------GFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
+ + G D++ G L +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA KGH EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSG--KTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+ + G T LH AA+ GH+ + ++
Sbjct: 73 VNAADKMGD----------TPLHLAALYGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K+ D +A + G T LH+AA G+ + V++LL A+V+A T+
Sbjct: 100 ---LKNGADVNATDTY-------GFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN D G T LH+AA+ G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD----------KMGDTPLHLAAL 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA + + G+ PL +A G +E LL +D
Sbjct: 90 YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + T+G ++PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDTYG--DTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+ ++ SG T LH AA GH+ + ++
Sbjct: 73 VNALDF----------SGSTPLHLAAKRGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K D +A G T LH+AA G+ + V++LL A+V+A T+
Sbjct: 100 ---LKYGADVNADDTI-------GSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + G T LH AA GH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDTYGD----------TPLHLAARVGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K+ D +AL F G T LH+AA
Sbjct: 64 EVL--------------------------LKNGADVNALD-F------SGSTPLHLAAKR 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A D I GSTPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKYGADVNA--------DDTI--GSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
+ + G D++ G L +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
G T LH+AA G+ + V++LL A+V+A+ F +GSTPLH AA G+L+
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDF----------SGSTPLHLAAKRGHLEIV 96
Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
+VLL GA + + G PL +A G +E LL +D
Sbjct: 97 EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 43/132 (32%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+PLH AA GH E+V LLLE GADVN+++ +GRT LH AA NGH+ ++L
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDK----------NGRTPLHLAARNGHLEVVKL 53
Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
+ +++ D VN G T LH+AA NG+
Sbjct: 54 L--------------------------LEAGAD-------VNAKDKNGRTPLHLAARNGH 80
Query: 167 FDCVQLLLDLHA 178
+ V+LLL+ A
Sbjct: 81 LEVVKLLLEAGA 92
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 12/92 (13%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AAR+G K+LL+ + G +PLH AA GH E+V LLLE GADVN+++
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNG--RTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66
Query: 77 CGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
+GRT LH AA NGH+ ++L++
Sbjct: 67 ----------NGRTPLHLAARNGHLEVVKLLL 88
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 43/135 (31%)
Query: 87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 146
+GRT LH AA NGH+ ++L++ ++ D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLL--------------------------EAGAD------- 27
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN G T LH+AA NG+ + V+LLL+ A+V+A + G TPLH AA
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAAR 77
Query: 207 GGNLKCCQVLLSRGA 221
G+L+ ++LL GA
Sbjct: 78 NGHLEVVKLLLEAGA 92
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
G T LH+AA NG+ + V+LLL+ A+V+A + G TPLH AA G+L+
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVV 51
Query: 214 QVLLSRGASRMSLNCNGWLPLDVA 237
++LL GA + + NG PL +A
Sbjct: 52 KLLLEAGADVNAKDKNGRTPLHLA 75
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
AAR+G K+LL+ + G +PLH AA GH E+V LLLE GA
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNG--RTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 67.0 bits (162), Expect = 2e-11, Method: Composition-based stats.
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ Y +G +PLH AAA GH EIV +LL NGAD
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADANAYDHYG--RTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+ + +G T LH AA GH+ + ++
Sbjct: 61 VNAVD----------TNGTTPLHLAASLGHLEIVEVL----------------------- 87
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K D VN GIT L++AA G+ + V++LL A+V+A T+
Sbjct: 88 ---LKYGAD-------VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTA 137
Query: 191 MDL 193
D+
Sbjct: 138 FDI 140
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 53/177 (29%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGAD N+ ++ GRT LH AA GH+ +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAYDH----------YGRTPLHMAAAVGHLEIV 51
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +++ D VN G T LH+AA
Sbjct: 52 EVL--------------------------LRNGAD-------VNAVDTNGTTPLHLAASL 78
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
G+ + V++LL A+V+A G TPL+ AA G+L+ +VLL GA
Sbjct: 79 GHLEIVEVLLKYGADVNAKD----------ATGITPLYLAAYWGHLEIVEVLLKHGA 125
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
G T LHMAA G+ + V++LL A+V+AV + G+TPLH AA G+L+
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN----------GTTPLHLAASLGHLEIV 84
Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
+VLL GA + + G PL +A WG +E LL +D
Sbjct: 85 EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + + G ++PLH AA GH EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQG--STPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+R+ G T LH AA NGH+ + ++
Sbjct: 73 VNARDT----------DGWTPLHLAADNGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K D +A + G+T LH+AA G+ + V++LL A+V+A T+
Sbjct: 100 ---LKYGADVNAQDAY-------GLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 53/193 (27%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + G T LH AA GH +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDD----------QGSTPLHLAAWIGHPEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
+++ K D VN G T LH+AA N
Sbjct: 64 EVLL--------------------------KHGAD-------VNARDTDGWTPLHLAADN 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A + G TPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKYGADVNAQDAY----------GLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 225 SLNCNGWLPLDVA 237
+ + G D++
Sbjct: 141 AQDKFGKTAFDIS 153
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 53/193 (27%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + +G T LH AAV+GH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADVNAVDN----------TGLTPLHLAAVSGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K D A + G T LH+AA+
Sbjct: 64 EVL--------------------------LKHGADVDAADVY-------GFTPLHLAAMT 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A GSTPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKYGADVNAFDM----------TGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVA 237
+ + G D++
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N GL +PLH AA GH EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILI-ANGADVNAVDNTGL-TPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
V++ + + G T LH AA+ GH+ + ++
Sbjct: 73 VDAAD----------VYGFTPLHLAAMTGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K D +A G T LH+AA G+ + V++LL A+V+A T+
Sbjct: 100 ---LKYGADVNAFDMT-------GSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN + G+T LH+AA++G+ + V++LL A+V A + G TPLH AA
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY----------GFTPLHLAAM 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA + + G PL +A G +E LL +D
Sbjct: 90 TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+PLH AA GH EIV +LL+ GADVN+ + ++G T LH AA GH+ + +
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGADVNAFD----------MTGSTPLHLAADEGHLEIVEV 131
Query: 107 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKS 136
++ AD F I D G+ KS
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAKS 164
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
AA G D V++L+ A+V+AV G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILIANGADVNAVD----------NTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 221 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
A + + G+ PL +A M G +E LL +D
Sbjct: 71 ADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 87/192 (45%), Gaps = 46/192 (23%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGRDDEVRILMANGADVNAADVVGW--TPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+ + G T LH AA GH+ + ++
Sbjct: 73 VNAYDTLGS----------TPLHLAAHFGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K+ D VN D GIT LH+AA G+ + V++LL A+V+A T+
Sbjct: 100 ---LKNGAD-------VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 191 MDL-IGAGSTPL 201
D+ I G+ L
Sbjct: 150 FDISINNGNEDL 161
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 53/193 (27%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + G T LH AA GH+ +
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAADVVGW----------TPLHLAAYWGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
+++ K+ D +A G T LH+AA
Sbjct: 64 EVLL--------------------------KNGADVNAYDTL-------GSTPLHLAAHF 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A + G TPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKNGADVNAKDDN----------GITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVA 237
+ + G D++
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN A G T LH+AA G+ + V++LL A+V+A Y T GSTPLH AA
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA----YDT------LGSTPLHLAAH 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA + + NG PL +A G +E LL +D
Sbjct: 90 FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 18/122 (14%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
AA G D V++L+ A+V+A G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADV----------VGWTPLHLAAYWGHLEIVEVLLKNG 70
Query: 221 ASRMSLNCNGWLPLDVARMWGR-HWLEPLL-------APSSDAVMPRFHPSNYLSLPLLS 272
A + + G PL +A +G +E LL A + + P +N L ++
Sbjct: 71 ADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVE 130
Query: 273 VL 274
VL
Sbjct: 131 VL 132
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N F G +PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNARDFTGW-TPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+++ G T LH AA GH+ + ++
Sbjct: 73 VNAKDSLGV----------TPLHLAARRGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K+ D VN + G T LH+AA G+ + V++LL A+V+A T+
Sbjct: 100 ---LKNGAD-------VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+R++ G T LH AA GH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNARDFTGW----------TPLHLAAHFGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
+++ +G+ V +K G+T LH+AA
Sbjct: 64 EVLLK--------------------NGADVNAKDSL-------------GVTPLHLAARR 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A H G TPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKNGADVNASDSH----------GFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
+ + G D++ G L +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
G T LH+AA G+ + V++LL A+V+A G TPLH AA G+L+
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKD----------SLGVTPLHLAARRGHLEIV 96
Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
+VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 97 EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.5 bits (158), Expect = 7e-11, Method: Composition-based stats.
Identities = 59/206 (28%), Positives = 87/206 (42%), Gaps = 55/206 (26%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA +GH EIV +LL+ GAD
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+++ G T LH AA GH+ + ++
Sbjct: 61 VNAKDK----------DGYTPLHLAAREGHLEIVEVL----------------------- 87
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K+ D VN G T LH+AA G+ + V++LL A+V+A
Sbjct: 88 ---LKAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD------ 131
Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVL 216
G TP A GN +VL
Sbjct: 132 ----KFGKTPFDLAIDNGNEDIAEVL 153
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 53/193 (27%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+++ G T LH AA GH+ +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDK----------DGYTPLHLAAREGHLEIV 51
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
+++ K+ D VN G T LH+AA
Sbjct: 52 EVLL--------------------------KAGAD-------VNAKDKDGYTPLHLAARE 78
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A D G TPLH AA G+L+ +VLL GA
Sbjct: 79 GHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 225 SLNCNGWLPLDVA 237
+ + G P D+A
Sbjct: 129 AQDKFGKTPFDLA 141
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN G T LH+AA G+ + V++LL A+V+A D G TPLH AA
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 53/193 (27%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ ++ G T LH AA GH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDWLGH----------TPLHLAAKTGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
+++ K D +A + G T LH+AA N
Sbjct: 64 EVLL--------------------------KYGADVNAWDNY-------GATPLHLAADN 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A + G TPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKHGADVNAKDYE----------GFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVA 237
+ + G D++
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 47/184 (25%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G ++PLH AA GH EIV +LL+ GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDWLG--HTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 71 VNS-RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRG 129
VN+ NY G T LH AA NGH+ + +++
Sbjct: 73 VNAWDNY-----------GATPLHLAADNGHLEIVEVLLK-------------------- 101
Query: 130 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 189
G+ V +K + G T LH+AA +G+ + V++LL A+V+A T
Sbjct: 102 HGADVNAKDYE-------------GFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 190 SMDL 193
+ D+
Sbjct: 149 AFDI 152
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
G T LH+AA G+ + V++LL A+V+A + G+TPLH AA G+L+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY----------GATPLHLAADNGHLEIV 96
Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
+VLL GA + + G+ PL +A G +E LL +D
Sbjct: 97 EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N + G +PLH AA+ GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNATDNDGY-TPLHLAASNGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+ + L+G T LH AA GH+ + ++
Sbjct: 73 VNASD----------LTGITPLHLAAATGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K D VN + G T LH+AA G+ + V++LL A+V+A T+
Sbjct: 100 ---LKHGAD-------VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 88/205 (42%), Gaps = 53/205 (25%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + G T LH AA NGH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDN----------DGYTPLHLAASNGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K+ D VN + GIT LH+AA
Sbjct: 64 EVL--------------------------LKNGAD-------VNASDLTGITPLHLAAAT 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A Y G TPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKHGADVNA----YDND------GHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
+ + G D++ G L +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN + G T LH+AA NG+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL----------TGITPLHLAAA 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA + + +G PL +A +G +E LL +D
Sbjct: 90 TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 53/193 (27%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ ++ G T LH NGH+ I
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDWFG----------ITPLHLVVNNGHLEII 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
+++ K D VN + G T LH+AA
Sbjct: 64 EVLL--------------------------KYAAD-------VNASDKSGWTPLHLAAYR 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A+ + G TPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKYGADVNAMDYQ----------GYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVA 237
+ + G D++
Sbjct: 141 AQDKFGKTAFDIS 153
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 80/183 (43%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + FG +PLH GH EI+ +LL+ AD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDWFG--ITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+ + SG T LH AA GH+ + ++
Sbjct: 73 VNASDK----------SGWTPLHLAAYRGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K D +A+ G T LH+AA +G+ + V++LL A+V+A T+
Sbjct: 100 ---LKYGADVNAMDY-------QGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G TPLH G+L+ +VLL A + + +GW PL +A G +E LL +D
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N + GL +PLH AA GH EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+ + + G T LH AA+ GH+ + ++
Sbjct: 73 VNAID----------IXGSTPLHLAALIGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K D +A+ + G T LH+AA+ G+ + V++LL A+V+A T+
Sbjct: 100 ---LKHGADVNAVDTW-------GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 53/205 (25%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + SG T LH AA GH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDA----------SGLTPLHLAATYGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K D +A+ G T LH+AAL
Sbjct: 64 EVL--------------------------LKHGADVNAIDIX-------GSTPLHLAALI 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+AV G TPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKHGADVNAVDT----------WGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
+ + G D++ G L +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN G+T LH+AA G+ + V++LL A+V+A+ GSTPLH AA
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI----------XGSTPLHLAAL 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA +++ G PL +A + G +E LL +D
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
AA G D V++L+ A+V+A +G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNATD----------ASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 221 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
A +++ G PL +A + G +E LL +D
Sbjct: 71 ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA +GH EIV +LL+ GAD
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+++ G T LH AA GH+ + ++
Sbjct: 61 VNAKDK----------DGYTPLHLAAREGHLEIVEVL----------------------- 87
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K+ D VN G T LH+AA G+ + V++LL A+V+A T
Sbjct: 88 ---LKAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Query: 191 MDL 193
DL
Sbjct: 138 FDL 140
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 53/193 (27%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+++ G T LH AA GH+ +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDK----------DGYTPLHLAAREGHLEIV 51
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
+++ K+ D VN G T LH+AA
Sbjct: 52 EVLL--------------------------KAGAD-------VNAKDKDGYTPLHLAARE 78
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A D G TPLH AA G+L+ +VLL GA
Sbjct: 79 GHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 225 SLNCNGWLPLDVA 237
+ + G P D+A
Sbjct: 129 AQDKFGKTPFDLA 141
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN G T LH+AA G+ + V++LL A+V+A D G TPLH AA
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N G +PLH AA +GH EIV +LL+ GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+++ G T LH AA GH+ + ++
Sbjct: 73 VNAKDK----------DGYTPLHLAAREGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K+ D +A K G T LH+AA G+ + V++LL A+V+A T+
Sbjct: 100 ---LKAGADVNAKDK-------DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 53/205 (25%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+++ G T LH AA GH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDK----------DGYTPLHLAAREGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K+ D +A K G T LH+AA
Sbjct: 64 EVL--------------------------LKAGADVNAKDK-------DGYTPLHLAARE 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A G TPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKAGADVNAKDKD----------GYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
+ + G D++ G L +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN G T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD----------GYTPLHLAAR 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA + + +G+ PL +A G +E LL +D
Sbjct: 90 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N + GL +PLH AA GH EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+ + G T LH AA+ GH+ + ++
Sbjct: 73 VNAIDIMGS----------TPLHLAALIGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K D +A+ + G T LH+AA+ G+ + V++LL A+V+A T+
Sbjct: 100 ---LKHGADVNAVDTW-------GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 53/205 (25%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + SG T LH AA GH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDA----------SGLTPLHLAATYGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K D +A+ G T LH+AAL
Sbjct: 64 EVL--------------------------LKHGADVNAIDIM-------GSTPLHLAALI 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+AV G TPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKHGADVNAVDT----------WGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
+ + G D++ G L +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN G+T LH+AA G+ + V++LL A+V+A+ GSTPLH AA
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI----------MGSTPLHLAAL 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA +++ G PL +A + G +E LL +D
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + SG T LH AA NGH+ +
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDA----------SGWTPLHLAAFNGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K+ D VN G+T L +AAL
Sbjct: 64 EVL--------------------------LKNGAD-------VNAVDHAGMTPLRLAALF 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
G+ + V++LL A+V+A M+ G TPLH AA G+L+ +VLL GA
Sbjct: 91 GHLEIVEVLLKNGADVNA------NDME----GHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
+ + G D++ G L +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN G T LH+AA NG+ + V++LL A+V+AV AG TPL AA
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----------AGMTPLRLAAL 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA + + G PL +A M+G +E LL +D
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N G +PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGRDDEVRILM-ANGADVNAEDASGW-TPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN+ ++ G T L AA+ GH+ + ++
Sbjct: 73 VNAVDHAGM----------TPLRLAALFGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K+ D VN G T LH+AA+ G+ + V++LL A+V+A T+
Sbjct: 100 ---LKNGAD-------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN A + G T LH+AA +G+ + V++LL A+V A G TPLH AA
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF----------GYTPLHLAAY 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA +++ +G PL +A WG +E LL +D
Sbjct: 90 WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G +L+ AAR G E ++L+ + G +PLH AA GH EIV +LL++GAD
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTG--TTPLHLAAYSGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
V++ + + G T LH AA GH+ + +++
Sbjct: 73 VDASD----------VFGYTPLHLAAYWGHLEIVEVLL---------------------- 100
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
K+ D VN G+T LH+AA GY + V++LL A+V+A T+
Sbjct: 101 ----KNGAD-------VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 82/183 (44%), Gaps = 45/183 (24%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N S G +PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNASDHVGW-TPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
VN AD G T LH AA GH+ + ++
Sbjct: 73 VN----------ADDSLGVTPLHLAADRGHLEVVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
+K+ D VN G T LH+AA G+ + V++LL A+V+A T+
Sbjct: 100 ---LKNGAD-------VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 191 MDL 193
D+
Sbjct: 150 FDI 152
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN + G T LH+AA G+ + V++LL A+V+A S+ G TPLH AA
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA-----DDSL-----GVTPLHLAAD 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+L+ +VLL GA + + NG+ PL +A G +E LL +D
Sbjct: 90 RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 2 GNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIV 61
G+ +G L +AA++G E K LL + S G N+PLH AA GH EIV
Sbjct: 1 GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAAKNGHAEIV 58
Query: 62 ALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA 109
LLL GADVN+R+ G T H A NGH ++L+ A
Sbjct: 59 KLLLAKGADVNARSK----------DGNTPEHLAKKNGHHEIVKLLDA 96
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
G T LH AA NG+ + V+ LL A+V+A S D G+TPLH AA G+ +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNA------RSKD----GNTPLHLAAKNGHAEIV 58
Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
++LL++GA + + +G P +A+ G H + LL
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AA++G K+LL + S G N+P H A GH+EIV LL GADVN+R++
Sbjct: 49 AAKNGHAEIVKLLLAKGADVNARSKDG--NTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN + G T LH+AA NG+ + V+LLL A+V+A S D G+TP H A
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA------RSKD----GNTPEHLAKK 84
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGW 231
G+ + ++L ++GA +N W
Sbjct: 85 NGHHEIVKLLDAKGA---DVNARSW 106
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+TPLH AA G+ + + LLS+GA + + +G PL +A G ++ LLA +D
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 12/98 (12%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ A R G E ++L+ + G +PLH AA +GH EIV +LL++GAD
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
VN+R+ + GRT LH AA GH+ + +++
Sbjct: 73 VNARD----------IWGRTPLHLAATVGHLEIVEVLL 100
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN D G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW----------GRTPLHLAAT 89
Query: 207 GGNLKCCQVLLSRGA 221
G+L+ +VLL GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
+PLH AA GH EIV +LLE GADVN+++ G+
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK 114
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 61/149 (40%), Gaps = 43/149 (28%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L A G ++ V +L+ NGADVN+ + +G T LH AA GH+ +
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDD----------AGVTPLHLAAKRGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K D VN G T LH+AA
Sbjct: 64 EVL--------------------------LKHGAD-------VNARDIWGRTPLHLAATV 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
G+ + V++LL+ A+V+A T+ D+
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 35.8 bits (81), Expect = 0.049, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
A G D V++L+ A+V+A MD AG TPLH AA G+L+ +VLL G
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--------MD--DAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 221 ASRMSLNCNGWLPLDVARMWG 241
A + + G PL +A G
Sbjct: 71 ADVNARDIWGRTPLHLAATVG 91
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 12/98 (12%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ A R G E ++L+ + G +PLH AA +GH EIV +LL++GAD
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
VN+ + + GRT LH AA GH+ + +++
Sbjct: 73 VNASD----------IWGRTPLHLAATVGHLEIVEVLL 100
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN D G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW----------GRTPLHLAAT 89
Query: 207 GGNLKCCQVLLSRGA 221
G+L+ +VLL GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
+PLH AA GH EIV +LLE GADVN+++ G+
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGK 114
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 43/149 (28%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L A G ++ V +L+ NGADVN+ + +G T LH AA GH+ +
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDD----------AGVTPLHLAAKRGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K D VN + G T LH+AA
Sbjct: 64 EVL--------------------------LKHGAD-------VNASDIWGRTPLHLAATV 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
G+ + V++LL+ A+V+A T+ D+
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
A G D V++L+ A+V+A MD AG TPLH AA G+L+ +VLL G
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--------MD--DAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 221 ASRMSLNCNGWLPLDVARMWG 241
A + + G PL +A G
Sbjct: 71 ADVNASDIWGRTPLHLAATVG 91
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ A R G E ++L+ + G +PLH AA +GH EIV +LL++GAD
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
VN+ + GRT LH AA GH+ + +++
Sbjct: 73 VNASDSW----------GRTPLHLAATVGHLEIVEVLL 100
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN D G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD----------SWGRTPLHLAAT 89
Query: 207 GGNLKCCQVLLSRGA 221
G+L+ +VLL GA
Sbjct: 90 VGHLEIVEVLLEYGA 104
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
AA+ G ++LL + ++G +PLH AA GH EIV +LLE GADVN+++
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSWG--RTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111
Query: 77 CGQ 79
G+
Sbjct: 112 FGK 114
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 43/149 (28%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L A G ++ V +L+ NGADVN+ + +G T LH AA GH+ +
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDD----------AGVTPLHLAAKRGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K D VN + G T LH+AA
Sbjct: 64 EVL--------------------------LKHGAD-------VNASDSWGRTPLHLAATV 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
G+ + V++LL+ A+V+A T+ D+
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 35.8 bits (81), Expect = 0.049, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
A G D V++L+ A+V+A MD AG TPLH AA G+L+ +VLL G
Sbjct: 21 ATRAGQDDEVRILMANGADVNA--------MD--DAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 221 ASRMSLNCNGWLPLDVARMWG 241
A + + G PL +A G
Sbjct: 71 ADVNASDSWGRTPLHLAATVG 91
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 55.8 bits (133), Expect = 6e-08, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 12/98 (12%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E + +L N + + G ++PLH AA GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVR-ILTANGADVNANDYWG-HTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
VN+ +GRT LH AA H+ + +++
Sbjct: 73 VNATGN----------TGRTPLHLAAWADHLEIVEVLL 100
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 43/149 (28%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L NGADVN+ +Y G T LH AA+ GH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILTANGADVNANDYWGH----------TPLHLAAMLGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K+ D VN + G T LH+AA
Sbjct: 64 EVL--------------------------LKNGAD-------VNATGNTGRTPLHLAAWA 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
+ + V++LL A+V+A T+ D+
Sbjct: 91 DHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW--LEPLLAPSSD 254
G TPLH AA G+L+ +VLL GA + G PL +A W H +E LL +D
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLA-AWADHLEIVEVLLKHGAD 105
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 31/246 (12%)
Query: 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
G ++A GD E LL+ + Y+ GL + LH A + ++V L+ENGA
Sbjct: 40 DGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGL-TALHQACIDDNVDMVKFLVENGA 97
Query: 70 DVNSRNY-----------CGQVTRADYLSGRTALHFAAVNGHVRC-IRLVVADFVPSVPF 117
++N + CG + A+YL + A H AVN + + + + +
Sbjct: 98 NINQPDNEGWIPLHAAASCGYLDIAEYLISQGA-HVGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 118 EVMNTQ---IEGDRGDGSSVKSKCDQSAL-SKFVN--KAADGGITALHMAALNGYFDCVQ 171
+N Q IE R + + + + L S +N + A G TALH+AA GY + ++
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 231
LL+ +V+ + G TPLH AA G + C++L+ ++N G
Sbjct: 217 LLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266
Query: 232 LPLDVA 237
DVA
Sbjct: 267 TAFDVA 272
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 81/240 (33%), Gaps = 99/240 (41%)
Query: 56 GHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV 115
G E V LLE GAD+N N + G TALH A ++ +V ++ +V +
Sbjct: 51 GDTEEVLRLLERGADINYAN----------VDGLTALHQACIDDNVDMVKFLVEN----- 95
Query: 116 PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 175
G+++ N+ + G LH AA GY D + L+
Sbjct: 96 ---------------GANI-------------NQPDNEGWIPLHAAASCGYLDIAEYLIS 127
Query: 176 LHANVSAVTFHYGTSMDLI----------------------------------------- 194
A+V AV T +D+
Sbjct: 128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS 187
Query: 195 ---------GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC---NGWLPLDVARMWGR 242
+G T LH AA G + ++L+ +R +N +GW PL A WG+
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ---ARYDVNIKDYDGWTPLHAAAHWGK 244
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G N+PLH AA H EIV +LL++GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNANDRKG--NTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
VN+ + G T LH AA+ GH+ + +++
Sbjct: 73 VNAHDN----------DGSTPLHLAALFGHLEIVEVLL 100
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 40/149 (26%), Positives = 61/149 (40%), Gaps = 43/149 (28%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + G T LH AA H+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDR----------KGNTPLHLAADYDHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K D VN + G T LH+AAL
Sbjct: 64 EVL--------------------------LKHGAD-------VNAHDNDGSTPLHLAALF 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
G+ + V++LL A+V+A T+ D+
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 35.4 bits (80), Expect = 0.080, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G+TPLH AA +L+ +VLL GA + + +G PL +A ++G +E LL +D
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
A + G F K LLD N K G N+PL +A + GH+E+VALLL++GA +N+ N
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSG--NTPLIYACSGGHHELVALLLQHGASINASNN 183
Query: 77 CGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
G TALH A + HV + L++
Sbjct: 184 ----------KGNTALHEAVIEKHVFVVELLL 205
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
+SPLH AA G +++ LLL++GA+ +RN V LH A GH + ++
Sbjct: 87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVP----------LHLACQQGHFQVVK 136
Query: 106 -LVVADFVPSVPFEVMNT-QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
L+ ++ P+ NT I G + + Q S +N + + G TALH A +
Sbjct: 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS--INASNNKGNTALHEAVI 194
Query: 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMD 192
+ V+LLL A+V + T++D
Sbjct: 195 EKHVFVVELLLLHGASVQVLNKRQRTAVD 223
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN + G + LH+AAL+G D + LLL AN A + PLH A
Sbjct: 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARN----------ADQAVPLHLACQ 128
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
G+ + + LL A + +G PL A G H L LL
Sbjct: 129 QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N GL +PLH AA GH EIV +LL+ GAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNALDEDGL-TPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
VN+ + G T LH AA+ GH+ + +++
Sbjct: 73 VNAEDNFGI----------TPLHLAAIRGHLEIVEVLL 100
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN + G+T LH+AA G+ + V++LL A+V+A G TPLH AA
Sbjct: 40 VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED----------NFGITPLHLAAI 89
Query: 207 GGNLKCCQVLLSRGA 221
G+L+ +VLL GA
Sbjct: 90 RGHLEIVEVLLKHGA 104
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 43/149 (28%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + G T LH AA GH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNALDE----------DGLTPLHLAAQLGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K D +A F GIT LH+AA+
Sbjct: 64 EVL--------------------------LKYGADVNAEDNF-------GITPLHLAAIR 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
G+ + V++LL A+V+A T+ D+
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
AA G D V++L+ A+V+A L G TPLH AA G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNA----------LDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 221 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
A + + G PL +A + G +E LL +D
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ N GL +PLH AA H EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVRILM-ANGADVNAEDKVGL-TPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
VN+ + G+ T LH A+ GH+ + +++
Sbjct: 73 VNAIDAIGE----------TPLHLVAMYGHLEIVEVLL 100
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN G+T LH+AA+N + + V++LL A+V+A+ D I G TPLH A
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI--------DAI--GETPLHLVAM 89
Query: 207 GGNLKCCQVLLSRGA 221
G+L+ +VLL GA
Sbjct: 90 YGHLEIVEVLLKHGA 104
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 43/149 (28%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+ + G T LH AA+N H+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDKV----------GLTPLHLAAMNDHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K+ D +A+ G T LH+ A+
Sbjct: 64 EVL--------------------------LKNGADVNAIDAI-------GETPLHLVAMY 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
G+ + V++LL A+V+A T+ D+
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
AA G D V++L+ A+V+A G TPLH AA +L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNAED----------KVGLTPLHLAAMNDHLEIVEVLLKNG 70
Query: 221 ASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
A +++ G PL + M+G +E LL +D
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + +G +PL+ A A GH EIV +LL+NGAD
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDEYG--LTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHV 101
VN+ + G T LH AA GH+
Sbjct: 73 VNAVDAI----------GFTPLHLAAFIGHL 93
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN + G+T L++A +G+ + V++LL A+V+AV D IG TPLH AA
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--------DAIGF--TPLHLAAF 89
Query: 207 GGNLKCCQVLLSRGA 221
G+L+ +VLL GA
Sbjct: 90 IGHLEIAEVLLKHGA 104
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 44/158 (27%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+++ +Y G T L+ A +GH+ +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKD--------EY--GLTPLYLATAHGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
++ +K+ D +A+ G T LH+AA
Sbjct: 64 EVL--------------------------LKNGADVNAVDAI-------GFTPLHLAAFI 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDL-IGAGSTPL 201
G+ + ++LL A+V+A T+ D+ IG G+ L
Sbjct: 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
AA G D V++L+ A+V+A + G TPL+ A G+L+ +VLL G
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEY----------GLTPLYLATAHGHLEIVEVLLKNG 70
Query: 221 ASRMSLNCNGWLPLDVARMWG 241
A +++ G+ PL +A G
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIG 91
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ +A G ++PLH AA GH E+V LLLE GAD
Sbjct: 7 GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 64
Query: 71 VNSRNYCGQ 79
VN+++ G+
Sbjct: 65 VNAQDKFGK 73
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADV +++ +G T LH AA NGH+ +
Sbjct: 6 LGKKLLEAARAGQDDEVRILMANGADVAAKDK----------NGSTPLHLAARNGHLEVV 55
Query: 105 RLVV 108
+L++
Sbjct: 56 KLLL 59
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
G T LH+AA NG+ + V+LLL+ A+V+A T+ D+
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
Score = 32.0 bits (71), Expect = 0.85, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 10/61 (16%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
AA G D V++L+ A+V+A + GSTPLH AA G+L+ ++LL G
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKN----------GSTPLHLAARNGHLEVVKLLLEAG 62
Query: 221 A 221
A
Sbjct: 63 A 63
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 88/230 (38%), Gaps = 50/230 (21%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTR--------------ADYL------ 86
SPLH AA GH +I +L++ GA++++ C + R YL
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDT---CSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 87 ------SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 140
G T LH AA GH ++ ++++ V N Q +G
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-----NCQDDGGWTPMIWATEYKHV 124
Query: 141 SALSKFVNKAADGGITA------LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI 194
+ ++K +D I LH AA +G D ++LL ++ AV H
Sbjct: 125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH-------- 176
Query: 195 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 244
G +PLH AA C + LSR + N G PL A + + W
Sbjct: 177 --GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 30/189 (15%)
Query: 82 RADYLSGRTALHFAAVNGHVR-CIRLVVADFVPSVPFEVMNTQI--EGDRGDGSSVKSKC 138
+ ++ + R+ LH AA GHV C LV A E T + + +VK
Sbjct: 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI 64
Query: 139 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD----------------------- 175
AL V+ G T LH+AA G+++ VQ LL
Sbjct: 65 KAGAL---VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 176 LHANVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 234
H ++ + G+ +++ LH+AA G + ++LL+ ++N +G PL
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPL 181
Query: 235 DVARMWGRH 243
+A R+
Sbjct: 182 HIAARENRY 190
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 82/207 (39%), Gaps = 54/207 (26%)
Query: 1 MGNSFGCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAK 55
MG S G S + +L+ AA+ GD K L ++C + ST PLHFAA
Sbjct: 3 MGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGY 56
Query: 56 GHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV 115
+V LL++GADV++++ G V LH A GH L+V
Sbjct: 57 NRVSVVEYLLQHGADVHAKDKGGLVP----------LHNACSYGHYEVAELLVKHGA--- 103
Query: 116 PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 175
V+N + L KF T LH AA G ++ +LLL
Sbjct: 104 ---VVNV------------------ADLWKF---------TPLHEAAAKGKYEICKLLLQ 133
Query: 176 LHANVSAVTFHYGTSMDLIGAGSTPLH 202
A+ + T +DL+ G T +
Sbjct: 134 HGADPTKKNRDGNTPLDLVKDGDTDIQ 160
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 153 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 212
GG+ LH A G+++ +LL+ A V+ TPLH AA G +
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKHGAVVNVADL----------WKFTPLHEAAAKGKYEI 127
Query: 213 CQVLLSRGASRMSLNCNGWLPLDVAR 238
C++LL GA N +G PLD+ +
Sbjct: 128 CKLLLQHGADPTKKNRDGNTPLDLVK 153
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
D+ G STPLHFAA + + LL GA + + G +PL A +G + + LL
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 98
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
+AL +A+ GY D V LLL+ +++ ++ G TPL +A G ++KC +
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVRGNHVKCVEA 120
Query: 216 LLSRGASRMSLNCNGWLPLDVA 237
LL+RGA + +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 14 LVSAARDGDFVEAKMLLD--CNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
L+ A+ G+ + LL+ +P LAK S L A+ G+ +IV LLLE D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKER-----ESALSLASTGGYTDIVGLLLERDVD 94
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA 109
+N ++ +G T L +A HV+C+ ++A
Sbjct: 95 INIYDW----------NGGTPLLYAVRGNHVKCVEALLA 123
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
+AL +A+ GY D V LLL+ +++ ++ G TPL +A G ++KC +
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVHGNHVKCVEA 120
Query: 216 LLSRGASRMSLNCNGWLPLDVA 237
LL+RGA + +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 14 LVSAARDGDFVEAKMLLD--CNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
L+ A+ G+ + LL+ +P LAK S L A+ G+ +IV LLLE D
Sbjct: 40 LIWASAFGEIETVRFLLEWGADPHILAKER-----ESALSLASTGGYTDIVGLLLERDVD 94
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA 109
+N ++ +G T L +A HV+C+ ++A
Sbjct: 95 INIYDW----------NGGTPLLYAVHGNHVKCVEALLA 123
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ +A G ++PLH AA GH E+V LLLE GAD
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 82
Query: 71 VNSRNYCGQ 79
V +++ G+
Sbjct: 83 VXAQDKFGK 91
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADV +++ +G T LH AA NGH+ +
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDK----------NGSTPLHLAARNGHLEVV 73
Query: 105 RLVV 108
+L++
Sbjct: 74 KLLL 77
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
G T LH+AA NG+ + V+LLL+ A+V A T+ D+
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
AA G D V++L+ A+V+A + GSTPLH AA G+L+ ++LL G
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKN----------GSTPLHLAARNGHLEVVKLLLEAG 80
Query: 221 ASRMSLNCNGWLPLDVA 237
A + + G D++
Sbjct: 81 ADVXAQDKFGKTAFDIS 97
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 81/194 (41%), Gaps = 57/194 (29%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAA-VNGHVRCIR 105
SPLH AA+ G +EIV LL GA VN+ N +G T LH+AA N H +
Sbjct: 75 SPLHIAASAGRDEIVKALLGKGAQVNAVNQ----------NGCTPLHYAASKNRHEIAVM 124
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
L +EG G++ +K A TA+H AA G
Sbjct: 125 L-----------------LEG----GANPDAKDHYEA-------------TAMHRAAAKG 150
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRM 224
+ +LL +Y S ++ G+TPLH A ++ ++L+S+GAS
Sbjct: 151 NLKMIHILL-----------YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 199
Query: 225 SLNCNGWLPLDVAR 238
N PL VA+
Sbjct: 200 IENKEEKTPLQVAK 213
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
L+V + S E + I D+ S+ ++ DQ + TALH A G
Sbjct: 8 LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 51
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
+ + V+ LL L V+ D AG +PLH AA G + + LL +GA +
Sbjct: 52 HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 226 LNCNGWLPLDVARMWGRHWLEPLL 249
+N NG PL A RH + +L
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVML 125
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 72/191 (37%), Gaps = 53/191 (27%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+ LH+A + GH EIV LL+ G VN ++ +G + LH AA G ++
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDD----------AGWSPLHIAASAGRDEIVKA 91
Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
++ G G+ VN G T LH AA
Sbjct: 92 LL--------------------GKGAQ-------------VNAVNQNGCTPLHYAASKNR 118
Query: 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 226
+ +LL+ AN A + T+M H AA GNLK +LL AS
Sbjct: 119 HEIAVMLLEGGANPDAKDHYEATAM----------HRAAAKGNLKMIHILLYYKASTNIQ 168
Query: 227 NCNGWLPLDVA 237
+ G PL +A
Sbjct: 169 DTEGNTPLHLA 179
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 44/180 (24%)
Query: 47 SPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
SPL AA + + ++ LL+ G +V+ R G+ TALH AA+ ++
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE----------TALHIAALYDNLEA-A 53
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
+V+ + P + FE M +++ G TALH+A +N
Sbjct: 54 MVLMEAAPELVFEPMTSELYE---------------------------GQTALHIAVINQ 86
Query: 166 YFDCVQLLLDLHANVSA----VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
+ V+ LL A+VSA FHY +LI G PL FAAC G+ + ++L+ GA
Sbjct: 87 NVNLVRALLARGASVSARATGSVFHY-RPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA 145
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 139 DQSALSKF-------VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 191
D ALSK V++ G TALH+AAL +D ++ + L + F TS
Sbjct: 15 DVQALSKLLKFEGCEVHQRGAMGETALHIAAL---YDNLEAAMVLMEAAPELVFEPMTSE 71
Query: 192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
+ G T LH A N+ + LL+RGAS
Sbjct: 72 --LYEGQTALHIAVINQNVNLVRALLARGAS 100
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCG 78
PL FAA G EIV LL+E+GAD+ +++ G
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLG 154
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
L+ AA++ D LL C G + LH AA + E +L+E ++
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMG-ETALHIAALYDNLEAAMVLMEAAPEL-- 63
Query: 74 RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA 109
+ ++ G+TALH A +N +V +R ++A
Sbjct: 64 ---VFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 81/194 (41%), Gaps = 57/194 (29%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAA-VNGHVRCIR 105
SPLH AA+ G +EIV LL GA VN+ N +G T LH+AA N H +
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQVNAVNQ----------NGCTPLHYAASKNRHEIAVM 125
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
L +EG G++ +K A TA+H AA G
Sbjct: 126 L-----------------LEG----GANPDAKDHYEA-------------TAMHRAAAKG 151
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRM 224
+ +LL +Y S ++ G+TPLH A ++ ++L+S+GAS
Sbjct: 152 NLKMIHILL-----------YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 200
Query: 225 SLNCNGWLPLDVAR 238
N PL VA+
Sbjct: 201 IENKEEKTPLQVAK 214
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
L+V + S E + I D+ S+ ++ DQ + TALH A G
Sbjct: 9 LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 52
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
+ + V+ LL L V+ D AG +PLH AA G + + LL +GA +
Sbjct: 53 HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 226 LNCNGWLPLDVARMWGRHWLEPLL 249
+N NG PL A RH + +L
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVML 126
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 72/191 (37%), Gaps = 53/191 (27%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+ LH+A + GH EIV LL+ G VN ++ +G + LH AA G ++
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDD----------AGWSPLHIAASAGRDEIVKA 92
Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
++ G G+ VN G T LH AA
Sbjct: 93 LL--------------------GKGAQ-------------VNAVNQNGCTPLHYAASKNR 119
Query: 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 226
+ +LL+ AN A + T+M H AA GNLK +LL AS
Sbjct: 120 HEIAVMLLEGGANPDAKDHYEATAM----------HRAAAKGNLKMIHILLYYKASTNIQ 169
Query: 227 NCNGWLPLDVA 237
+ G PL +A
Sbjct: 170 DTEGNTPLHLA 180
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
+N G T LH+AA +G+ D VQ LL A+++AV H G+ PLH+A
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 114
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 238
G + + L++ GA N G +P+D A+
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 130 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 189
+G++V + +N+ D G + LH A G V++L+ G
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-----------MRGA 63
Query: 190 SMDLIGAGS-TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
++++ G TPLH AA G+ Q LL A ++N +G +PL A WG+
Sbjct: 64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRC 103
G ++PLH AA+ GH +IV LL+ AD+N+ N G V LH+A G +
Sbjct: 71 GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNV----------PLHYACFWGQDQV 120
Query: 104 IRLVVAD 110
+VA+
Sbjct: 121 AEDLVAN 127
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
+ + R+G+ V ++ LD G SPLH+A +G + +V +L+ GA +N
Sbjct: 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIMRGARINV 67
Query: 74 RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
N R D T LH AA +GH ++ ++
Sbjct: 68 MN------RGD----DTPLHLAASHGHRDIVQKLL 92
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
+N G T LH+AA +G+ D VQ LL A+++AV H G+ PLH+A
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 109
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 238
G + + L++ GA N G +P+D A+
Sbjct: 110 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 130 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 189
+G++V + +N+ D G + LH A G V++L+ G
Sbjct: 10 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-----------MRGA 58
Query: 190 SMDLIGAGS-TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
++++ G TPLH AA G+ Q LL A ++N +G +PL A WG+
Sbjct: 59 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 112
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRC 103
G ++PLH AA+ GH +IV LL+ AD+N+ N G V LH+A G +
Sbjct: 66 GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP----------LHYACFWGQDQV 115
Query: 104 IRLVVAD 110
+VA+
Sbjct: 116 AEDLVAN 122
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV 71
+ + + R+G+ V ++ LD G SPLH+A +G + +V +L+ GA +
Sbjct: 2 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIMRGARI 60
Query: 72 NSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
N N R D T LH AA +GH ++ ++
Sbjct: 61 NVMN------RGD----DTPLHLAASHGHRDIVQKLL 87
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 76/193 (39%), Gaps = 55/193 (28%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAA-VNGHVRCIR 105
SPLH AA+ G +EIV LL GA VN+ N +G T LH+AA N H +
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHVNAVNQ----------NGCTPLHYAASKNRHEIAVM 124
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
L +EG G K D TA+H AA G
Sbjct: 125 L-----------------LEG--GANPDAKDHYDA---------------TAMHRAAAKG 150
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
V +LL F+ ++ G+TPLH A ++ + L+++GAS
Sbjct: 151 NLKMVHILL----------FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Query: 226 LNCNGWLPLDVAR 238
N PL VA+
Sbjct: 201 ENKEEKTPLQVAK 213
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
TALH A G+ + V+ LL L V+ D AG +PLH AA G + +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKA 91
Query: 216 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
LL +GA ++N NG PL A RH + +L
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 68/180 (37%), Gaps = 57/180 (31%)
Query: 81 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 140
TR D S RTALH+A GH + ++ VP
Sbjct: 34 TRTDQDS-RTALHWACSAGHTEIVEFLLQLGVP--------------------------- 65
Query: 141 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT------FHYGTSMD-- 192
VN D G + LH+AA G + V+ LL A+V+AV HY S +
Sbjct: 66 ------VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119
Query: 193 -----LIGAGSTP----------LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
L+ G+ P +H AA GNLK +LL AS + G PL +A
Sbjct: 120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 76/193 (39%), Gaps = 55/193 (28%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAA-VNGHVRCIR 105
SPLH AA+ G +EIV LL GA VN+ N +G T LH+AA N H +
Sbjct: 75 SPLHIAASAGXDEIVKALLVKGAHVNAVNQ----------NGCTPLHYAASKNRHEIAVM 124
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
L +EG G K D TA+H AA G
Sbjct: 125 L-----------------LEG--GANPDAKDHYDA---------------TAMHRAAAKG 150
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
V +LL F+ ++ G+TPLH A ++ + L+++GAS
Sbjct: 151 NLKMVHILL----------FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Query: 226 LNCNGWLPLDVAR 238
N PL VA+
Sbjct: 201 ENKEEKTPLQVAK 213
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 68/180 (37%), Gaps = 57/180 (31%)
Query: 81 TRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 140
TR D S RTALH+A GH + ++ VP
Sbjct: 34 TRTDQDS-RTALHWACSAGHTEIVEFLLQLGVP--------------------------- 65
Query: 141 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT------FHYGTSMD-- 192
VN D G + LH+AA G + V+ LL A+V+AV HY S +
Sbjct: 66 ------VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH 119
Query: 193 -----LIGAGSTP----------LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
L+ G+ P +H AA GNLK +LL AS + G PL +A
Sbjct: 120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
TALH A G+ + V+ LL L V+ D AG +PLH AA G + +
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGXDEIVKA 91
Query: 216 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
LL +GA ++N NG PL A RH + +L
Sbjct: 92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 10/62 (16%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+PLH AA++GH IV +LL++GADVN+++ + TALH+A + H + L
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGADVNAKD----------MLKMTALHWATEHNHQEVVEL 118
Query: 107 VV 108
++
Sbjct: 119 LI 120
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 13/98 (13%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ A ++T SPLH AA GH +LL G
Sbjct: 3 GKKLLEAARAGQDDEVRILMANG---APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
++R T+ D RT LH AA GH + +++
Sbjct: 60 RDAR------TKVD----RTPLHMAASEGHANIVEVLL 87
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRN-YC 77
+ LH+A H E+V LL++ GADV++++ +C
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFC 133
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
G++PLH AA G+ +VLL G SR + PL +A G + +E LL +D
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD 92
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 50/222 (22%)
Query: 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
L A + +F + + LL P L G PLH++ + +EI + LL +VN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 74 RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 133
+Y SG T H A G++
Sbjct: 65 DDYPDD-------SGWTPFHIACSVGNLEV------------------------------ 87
Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
VKS D+ L +NK + G+T LH+A +F+ Q L++ A+V
Sbjct: 88 VKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD--------- 137
Query: 194 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPL 234
PLH AA G+LK ++L G S ++ + GW PL
Sbjct: 138 -KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 71/266 (26%)
Query: 7 CSASGER--------LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
S+SG R L+ A ++ D + LL+ + GG +PLH A
Sbjct: 14 TSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRE 72
Query: 59 EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA--------D 110
+IV LLL +GAD R +G T AA+ G V+ ++L ++ D
Sbjct: 73 DIVELLLRHGADPVLRKK----------NGATPFILAAIAGSVKLLKLFLSKGADVNECD 122
Query: 111 FVPSVPF-------EVMNTQIEGDRGDGSSV--KSKCDQSALSKFVNKAADGGITALHMA 161
F F +V + RG ++ K+K DQ L K GG TAL A
Sbjct: 123 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK-------GGATALMDA 175
Query: 162 ALNGYFDCVQLLLD-----------------LHA-------NVSAVT---FHYGTSMDLI 194
A G+ + +++LLD +HA +V A+T +G +++
Sbjct: 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 235
Query: 195 GA-GSTPLHFAACGGNLKCCQVLLSR 219
G G TPL A +L Q LL +
Sbjct: 236 GERGKTPLILAVEKKHLGLVQRLLEQ 261
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 211
+GG T LH A D V+LLL H + G+TP AA G++K
Sbjct: 57 EGGWTPLHNAVQMSREDIVELLL----------RHGADPVLRKKNGATPFILAAIAGSVK 106
Query: 212 CCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
++ LS+GA + G+ A ++G+
Sbjct: 107 LLKLFLSKGADVNECDFYGFTAFMEAAVYGK 137
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 50/222 (22%)
Query: 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
L A + +F + + LL P L G PLH++ + +EI + LL +VN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 74 RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 133
+Y SG T H A G++
Sbjct: 65 DDYPDD-------SGWTPFHIACSVGNLEV------------------------------ 87
Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
VKS D+ L +NK + G+T LH+A +F+ Q L++ A+V
Sbjct: 88 VKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD--------- 137
Query: 194 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPL 234
PLH AA G+LK ++L G S ++ + GW PL
Sbjct: 138 -KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 50/222 (22%)
Query: 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
L A + +F + + LL P L G PLH++ + +EI + LL +VN
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 74 RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 133
+Y SG T H A G++
Sbjct: 65 DDYPDD-------SGWTPFHIACSVGNLEV------------------------------ 87
Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
VKS D+ L +NK + G+T LH+A +F+ Q L++ A+V
Sbjct: 88 VKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD--------- 137
Query: 194 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPL 234
PLH AA G+LK ++L G S ++ + GW PL
Sbjct: 138 -KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 43/148 (29%)
Query: 88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
G T LH A++ G + PSV + + N G +VK
Sbjct: 10 GETLLHIASIKGDI-----------PSVEYLLQN-------GSDPNVKDH---------- 41
Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
G T LH A +G+ V+LLL A V+ + +PLH AA
Sbjct: 42 -----AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDAAKN 86
Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLD 235
G++ ++LLS GASR ++N G P+D
Sbjct: 87 GHVDIVKLLLSYGASRNAVNIFGLRPVD 114
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+PLH A GH ++V LLL++ A VN+ Y + LH AA NGHV ++L
Sbjct: 45 TPLHEACNHGHLKVVELLLQHKALVNTTGY----------QNDSPLHDAAKNGHVDIVKL 94
Query: 107 VVA 109
+++
Sbjct: 95 LLS 97
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 43/135 (31%)
Query: 49 LHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
LH A+ KG V LL+NG+D N +++ +G T LH A +GH++ + L++
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDH----------AGWTPLHEACNHGHLKVVELLL 63
Query: 109 ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168
VN + LH AA NG+ D
Sbjct: 64 QH---------------------------------KALVNTTGYQNDSPLHDAAKNGHVD 90
Query: 169 CVQLLLDLHANVSAV 183
V+LLL A+ +AV
Sbjct: 91 IVKLLLSYGASRNAV 105
Score = 35.4 bits (80), Expect = 0.071, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCG 78
+SPLH AA GH +IV LLL GA N+ N G
Sbjct: 77 DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
G++L+ AAR G E ++L+ + G +PLH AA +GH EIV +LL+ GAD
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 71 VNSRNYCGQ 79
VN+++ G+
Sbjct: 61 VNAQDKFGK 69
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
L L AA G ++ V +L+ NGADVN+++ G T LH AA GH+ +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDK----------DGYTPLHLAAREGHLEIV 51
Query: 105 RLVV 108
+++
Sbjct: 52 EVLL 55
Score = 29.6 bits (65), Expect = 3.7, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 197 GSTPLHFAACGGNLKCCQVLLSRGA 221
G TPLH AA G+L+ +VLL GA
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGA 59
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 31/201 (15%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
+PLH A +V LL+ GA + + GQ TA H A + C+R
Sbjct: 47 QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ----------TAAHLACEHRSPTCLR 96
Query: 106 LVVADFVP-SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-------GGITA 157
++ P ++ E N +G +V ++C Q + + + AD G +
Sbjct: 97 ALLDSAAPGTLDLEARN--YDGLTALHVAVNTEC-QETVQLLLERGADIDAVDIKSGRSP 153
Query: 158 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 217
L A N VQLLL ANV+A + +GS+ LH A+ G L + L+
Sbjct: 154 LIHAVENNSLSMVQLLLQHGANVNAQMY----------SGSSALHSASGRGLLPLVRTLV 203
Query: 218 SRGASRMSLNCNGWLPLDVAR 238
GA NC+ PL VAR
Sbjct: 204 RSGADSSLKNCHNDTPLMVAR 224
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 80/203 (39%), Gaps = 54/203 (26%)
Query: 4 SFGCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
+ G S + +L+ AA+ GD K L ++C + ST PLHFAA
Sbjct: 2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGYNRV 55
Query: 59 EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 118
+V LL++GADV++++ G V LH A GH L+V
Sbjct: 56 SVVEYLLQHGADVHAKDKGGLVP----------LHNACSYGHYEVAELLVKHGA------ 99
Query: 119 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 178
V+N + L KF T LH AA G ++ +LLL A
Sbjct: 100 VVNV------------------ADLWKF---------TPLHEAAAKGKYEICKLLLQHGA 132
Query: 179 NVSAVTFHYGTSMDLIGAGSTPL 201
+ + T +DL+ G T +
Sbjct: 133 DPTKKNRDGNTPLDLVKDGDTDI 155
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
V+ GG+ LH A G+++ +LL+ A V+ TPLH AA
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL----------WKFTPLHEAAA 117
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 238
G + C++LL GA N +G PLD+ +
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
D+ G STPLHFAA + + LL GA + + G +PL A +G + + LL
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 94
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 10/63 (15%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+PLH AA + HN+++ +L ++GA +N+ + GQ TALH AA+ GH++ RL
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ----------TALHRAALAGHLQTCRL 298
Query: 107 VVA 109
+++
Sbjct: 299 LLS 301
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 32/223 (14%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ--VTRADYLSGRTALHFAAVNGHVRCI 104
+PLH AA+K E+ +LLL +GAD N G+ V A R L + GH
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE-FKGHSLLQ 184
Query: 105 RLVVADFVP---SVPFEVMNTQIEGDRGDG-----SSVKSKCDQSA---LSK--FVNKAA 151
AD ++ E++N + +S+ K Q A L K VN+
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244
Query: 152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNL 210
+T LH+AA + D +++L +G M+ + + G T LH AA G+L
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVL-----------HKHGAKMNALDSLGQTALHRAALAGHL 293
Query: 211 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 253
+ C++LLS G+ ++ G+ A G ++ +L+ S+
Sbjct: 294 QTCRLLLSYGSDPSIISLQGF----TAAQMGNEAVQQILSEST 332
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
V+ GG+ LH A G+++ +LLL A V+A MDL TPLH AA
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA--------MDLWQ--FTPLHEAAS 133
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
++ C +LLS GA +NC+G +D+A
Sbjct: 134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 12 ERLVSAARDGDFVEAKMLLDCNPCLAK-YSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
+ L+ AAR G+ E K++ P +++ G ++PLH AA IV LLL++GAD
Sbjct: 26 DELLEAARSGN--EEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
V++++ G V LH A GH L++
Sbjct: 84 VHAKDKGGLVP----------LHNACSYGHYEVTELLL 111
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 195 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
G STPLH AA ++ Q+LL GA + + G +PL A +G + + LL
Sbjct: 56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 214 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 249
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCG 78
N PLH AA +GH +V L+++ A +V RN+ G
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 47/135 (34%), Gaps = 40/135 (29%)
Query: 11 GERLVSAARDGDFVEAKMLLDC---------------------NPCLAKYSTFGGLNSPL 49
G L SAA GD + LL NP +A+ G N L
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 65
Query: 50 ---------HFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH 100
H AA G + + LLE ADVN + G + LH AA GH
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP----------LHLAAKEGH 115
Query: 101 VRCIRLVVADFVPSV 115
+R + +V +V
Sbjct: 116 LRVVEFLVKHTASNV 130
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 101/253 (39%), Gaps = 67/253 (26%)
Query: 14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
L+ A ++ D + LL+ + GG +PLH A +IV LLL +GAD
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 74 RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA--------DFVPSVPFEVMNTQIE 125
R +G T AA+ G V+ ++L ++ DF F M +
Sbjct: 68 RKK----------NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF--MEAAVY 115
Query: 126 G---------DRGDGSSV--KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 174
G RG ++ K+K DQ L K GG TAL AA G+ + +++LL
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRK-------GGATALMDAAEKGHVEVLKILL 168
Query: 175 D-----------------LHA-------NVSAVT---FHYGTSMDLIGA-GSTPLHFAAC 206
D +HA +V A+T +G +++ G G TPL A
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228
Query: 207 GGNLKCCQVLLSR 219
+L Q LL +
Sbjct: 229 KKHLGLVQRLLEQ 241
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 211
+GG T LH A D V+LLL H + G+TP AA G++K
Sbjct: 37 EGGWTPLHNAVQMSREDIVELLL----------RHGADPVLRKKNGATPFLLAAIAGSVK 86
Query: 212 CCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
++ LS+GA + G+ A ++G+
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 45.1 bits (105), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 214 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 249
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 44/128 (34%), Gaps = 40/128 (31%)
Query: 11 GERLVSAARDGDFVEAKMLLDC---------------------NPCLAKYSTFGGLNSPL 49
G L SAA GD + LL NP +A+ G N L
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 65
Query: 50 ---------HFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH 100
H AA G + + LLE ADVN + G LH AA GH
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN----------EGNLPLHLAAKEGH 115
Query: 101 VRCIRLVV 108
+R + +V
Sbjct: 116 LRVVEFLV 123
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
N PLH AA +GH +V L+++ A +V RN+ G TA A + G +
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH----------KGDTACDLARLYGRNEVV 153
Query: 105 RLVVAD 110
L+ A+
Sbjct: 154 SLMQAN 159
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 79/201 (39%), Gaps = 54/201 (26%)
Query: 6 GCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
G S + +L+ AA+ GD K L ++C + ST PLHFAA +
Sbjct: 6 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGYNRVSV 59
Query: 61 VALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 120
V LL++GADV++++ G V LH A GH L+V V+
Sbjct: 60 VEYLLQHGADVHAKDKGGLVP----------LHNACSYGHYEVAELLVKHGA------VV 103
Query: 121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 180
N + L KF T LH AA G ++ +LLL A+
Sbjct: 104 NV------------------ADLWKF---------TPLHEAAAKGKYEICKLLLQHGADP 136
Query: 181 SAVTFHYGTSMDLIGAGSTPL 201
+ T +DL+ G T +
Sbjct: 137 TKKNRDGNTPLDLVKDGDTDI 157
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
V+ GG+ LH A G+++ +LL+ A V+ TPLH AA
Sbjct: 70 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL----------WKFTPLHEAAA 119
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 238
G + C++LL GA N +G PLD+ +
Sbjct: 120 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
D+ G STPLHFAA + + LL GA + + G +PL A +G + + LL
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 96
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 214 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 249
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 28 MLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLS 87
+L NP L + N+ +H AA G + + LLE ADVN + G +
Sbjct: 57 LLRGANPDLKDRTG----NAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP------ 106
Query: 88 GRTALHFAAVNGHVRCIRLVVADFVPSV 115
LH AA GH+R + +V +V
Sbjct: 107 ----LHLAAKEGHLRVVEFLVKHTASNV 130
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 16 SAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA-DVNSR 74
AAR G + LL+ + G N PLH AA +GH +V L+++ A +V R
Sbjct: 76 DAARAGFLDTLQTLLEFQADVNIEDNEG--NLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 75 NYCG 78
N+ G
Sbjct: 134 NHKG 137
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
G +H AA G+ D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLENQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 214 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 249
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 48/135 (35%), Gaps = 40/135 (29%)
Query: 11 GERLVSAARDGDFVEAKMLLDC---------------------NPCLAKYSTFGGLNSPL 49
G L SAA GD + LL NP +A+ G N L
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 65
Query: 50 ---------HFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH 100
H AA G + + LLEN ADVN + G + LH AA GH
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLP----------LHLAAKEGH 115
Query: 101 VRCIRLVVADFVPSV 115
+R + +V +V
Sbjct: 116 LRVVEFLVKHTASNV 130
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCG 78
N PLH AA +GH +V L+++ A +V RN+ G
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
G +H AA G D +Q LL+ A+V+ G+ PLH AA G+L+
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 214 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 249
+ L+ AS + N G D+AR++GR+ + L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 16 SAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA-DVNSR 74
AAR G + LL+ + G N PLH AA +GH +V L+++ A +V R
Sbjct: 76 DAARAGQLDTLQTLLEFQADVNIEDNEG--NLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133
Query: 75 NYCG 78
N+ G
Sbjct: 134 NHKG 137
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 47/135 (34%), Gaps = 40/135 (29%)
Query: 11 GERLVSAARDGDFVEAKMLLDC---------------------NPCLAKYSTFGGLNSPL 49
G L SAA GD + LL NP +A+ G N L
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDL 65
Query: 50 ---------HFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH 100
H AA G + + LLE ADVN + G + LH AA GH
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLP----------LHLAAKEGH 115
Query: 101 VRCIRLVVADFVPSV 115
+R + +V +V
Sbjct: 116 LRVVEFLVKHTASNV 130
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 211
D GITALH A G+ + V+ L+ NV+A G TPLH AA N++
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD----------SDGWTPLHCAASCNNVQ 117
Query: 212 CCQVLLSRGASRMSL 226
C+ L+ GA+ ++
Sbjct: 118 VCKFLVESGAAVFAM 132
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
++L G FD VQ ++ + S G T LH A C G+ + + L+ G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPN----------DEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 221 ASRMSLNCNGWLPL 234
+ + + +GW PL
Sbjct: 94 VNVNAADSDGWTPL 107
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+ LH A GH EIV L++ G +VN+ + G T LH AA +V+ +
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADS----------DGWTPLHCAASCNNVQVCKF 121
Query: 107 VV 108
+V
Sbjct: 122 LV 123
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 153 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 212
G +AL +A GY D V++LLD +V+ ++ G TPL +A G ++KC
Sbjct: 66 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKC 115
Query: 213 CQVLLSRGASRMSLNCNGWLPLDVARMWG 241
++LL GA +G+ +D+A G
Sbjct: 116 VKMLLESGADPTIETDSGYNSMDLAVALG 144
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRC 103
G S L A +KG+ +IV +LL+ G DVN ++ +G T L +A HV+C
Sbjct: 66 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDW----------NGGTPLLYAVHGNHVKC 115
Query: 104 IRLVV 108
+++++
Sbjct: 116 VKMLL 120
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 27 KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
KMLLDC + +Y GG +PL +A H + V +LLE+GAD
Sbjct: 84 KMLLDCGVDVNEYDWNGG--TPLLYAVHGNHVKCVKMLLESGAD 125
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 119 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 178
++++ +EG+ + + D +L D GITALH A G+ + V+ L+
Sbjct: 41 LLDSSLEGEFDLVQRIIYEVDDPSLPN------DEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 179 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 226
NV+A G TPLH AA N++ C+ L+ GA+ ++
Sbjct: 95 NVNAAD----------SDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
++L G FD VQ ++ + S G T LH A C G+ + + L+ G
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPN----------DEGITALHNAVCAGHTEIVKFLVQFG 93
Query: 221 ASRMSLNCNGWLPL 234
+ + + +GW PL
Sbjct: 94 VNVNAADSDGWTPL 107
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+ LH A GH EIV L++ G +VN+ + G T LH AA +V+ +
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADS----------DGWTPLHCAASCNNVQVCKF 121
Query: 107 VV 108
+V
Sbjct: 122 LV 123
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 68/197 (34%), Gaps = 48/197 (24%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
+PLH A EI LL G D R++ G T LH A G C+
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDF----------RGNTPLHLACEQG---CLA 92
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
V + C L + G T LH+A+++G
Sbjct: 93 SV------------------------GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
Y V+LL+ L A+V+A G T LH A N +LL GA
Sbjct: 129 YLGIVELLVSLGADVNAQE---------PCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Query: 226 LNCNGWLPLDVARMWGR 242
+ G+ P + WGR
Sbjct: 180 VTYQGYSPYQLT--WGR 194
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 10/61 (16%)
Query: 36 LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFA 95
+ K + + G ++ LH A+ G+ IV LL+ GADVN++ C +GRTALH A
Sbjct: 109 ILKATNYNG-HTCLHLASIHGYLGIVELLVSLGADVNAQEPC---------NGRTALHLA 158
Query: 96 A 96
Sbjct: 159 V 159
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 40/165 (24%)
Query: 22 DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVT 81
+ EA + C+P L + N+PLH A +G V +L ++ + + +
Sbjct: 59 EIAEALLGAGCDPELRDFRG----NTPLHLACEQGCLASVGVLTQSC----TTPHLHSIL 110
Query: 82 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 141
+A +G T LH A+++G++ + L+V+ G + + C+
Sbjct: 111 KATNYNGHTCLHLASIHGYLGIVELLVS------------------LGADVNAQEPCN-- 150
Query: 142 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 186
G TALH+A D V LLL A+V+ VT+
Sbjct: 151 ------------GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 55/192 (28%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
SP+H AA GH + L+ G VN + AD++S LH A + GH+ C+++
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVN-------IITADHVS---PLHEACLGGHLSCVKI 110
Query: 107 ----------VVADF-VP------SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK 149
V AD+ P S ++ +N ++ G+SV+ + D +
Sbjct: 111 LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ----HGASVQPESDLA-------- 158
Query: 150 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 209
+ +H AA G+ +CV L+ N+ H G TPL+ A
Sbjct: 159 ------SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG----------TPLYLACENQQ 202
Query: 210 LKCCQVLLSRGA 221
C + LL GA
Sbjct: 203 RACVKKLLESGA 214
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN ++ LH A L G+ CV++LL A V+ VT + TPL A
Sbjct: 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW----------HTPLFNACV 134
Query: 207 GGNLKCCQVLLSRGAS 222
G+ C +LL GAS
Sbjct: 135 SGSWDCVNLLLQHGAS 150
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
+ +H AA++G+ ++ L+ V+ +T + +PLH A GG+L C ++
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADH----------VSPLHEACLGGHLSCVKI 110
Query: 216 LLSRGASRMSLNCNGWLPL 234
LL GA + + PL
Sbjct: 111 LLKHGAQVNGVTADWHTPL 129
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
G +SPLH E+ LL++ GAD ++N G+
Sbjct: 221 GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGK 256
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 68/197 (34%), Gaps = 48/197 (24%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
+PLH A EI LL G D R++ G T LH A G C+
Sbjct: 43 QTPLHLAVITNQPEIAEALLGAGCDPELRDF----------RGNTPLHLACEQG---CLA 89
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
V + C L + G T LH+A+++G
Sbjct: 90 SV------------------------GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 125
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
Y V+LL+ L A+V+A G T LH A N +LL GA
Sbjct: 126 YLGIVELLVSLGADVNAQE---------PCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 176
Query: 226 LNCNGWLPLDVARMWGR 242
+ G+ P + WGR
Sbjct: 177 VTYQGYSPYQLT--WGR 191
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 10/61 (16%)
Query: 36 LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFA 95
+ K + + G ++ LH A+ G+ IV LL+ GADVN++ C +GRTALH A
Sbjct: 106 ILKATNYNG-HTCLHLASIHGYLGIVELLVSLGADVNAQEPC---------NGRTALHLA 155
Query: 96 A 96
Sbjct: 156 V 156
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 40/165 (24%)
Query: 22 DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVT 81
+ EA + C+P L + N+PLH A +G V +L ++ + + +
Sbjct: 56 EIAEALLGAGCDPELRDFRG----NTPLHLACEQGCLASVGVLTQSC----TTPHLHSIL 107
Query: 82 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQS 141
+A +G T LH A+++G++ + L+V+ G + + C+
Sbjct: 108 KATNYNGHTCLHLASIHGYLGIVELLVS------------------LGADVNAQEPCN-- 147
Query: 142 ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 186
G TALH+A D V LLL A+V+ VT+
Sbjct: 148 ------------GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 180
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 129 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYG 188
GD VK D A + VN+ +GG LH AA G + ++ LL A+++A H+
Sbjct: 13 GDLDEVK---DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH- 68
Query: 189 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD 235
TPL A G++ C ++LLS+GA + +G L+
Sbjct: 69 ---------ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 17 AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
A ++GD E K + D N T G PLH+AA G EI+ LL GAD+N
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVN------RTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62
Query: 73 SRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA 109
+ + T L A GHV C++L+++
Sbjct: 63 APDK----------HHITPLLSAVYEGHVSCVKLLLS 89
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 54/176 (30%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
SP+H AA GH + L+ G VN + AD++S LH A + GH+ C+++
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVN-------IITADHVS---PLHEACLGGHLSCVKI 54
Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
++ Q+ G D T L A ++G
Sbjct: 55 LLKH----------GAQVNGVTADWH-----------------------TPLFNACVSGS 81
Query: 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
+DCV LLL +G S+ ++P+H AA G+++C L++ G +
Sbjct: 82 WDCVNLLLQ-----------HGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 158 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS-TPLHFAACGGNLKCCQVL 216
+H AA++G+ ++ L+ G ++++I A +PLH A GG+L C ++L
Sbjct: 7 MHEAAIHGHQLSLRNLIS-----------QGWAVNIITADHVSPLHEACLGGHLSCVKIL 55
Query: 217 LSRGASRMSLNCNGWLPL 234
L GA + + PL
Sbjct: 56 LKHGAQVNGVTADWHTPL 73
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
G +SPLH A E+ LL++ GAD ++N G+
Sbjct: 165 GQDSPLHAVARTASEELACLLMDFGADTQAKNAEGK 200
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 196 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 254
+G++P+H AA G L +VL+ GA +L+ G LP+ +A G + LAP SD
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD 131
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
SP+H AA G + + +L+E+GADVN+ + G + +H A GH +
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP----------IHLAIREGHSSVV 123
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 196 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 254
+G++P+H AA G L +VL+ GA +L+ G LP+ +A G + LAP SD
Sbjct: 75 SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPESD 133
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
SP+H AA G + + +L+E+GADVN+ + G + +H A GH +
Sbjct: 77 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLP----------IHLAIREGHSSVV 125
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
+AL +A GY D V++LLD +V+ ++ G TPL +A G ++KC ++
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKCVKM 120
Query: 216 LLSRGASRMSLNCNGWLPLDVARMWG 241
LL GA +G+ +D+A G
Sbjct: 121 LLESGADPTIETDSGYNSMDLAVALG 146
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRC 103
G S L A +KG+ +IV +LL+ G DVN ++ +G T L +A HV+C
Sbjct: 68 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDW----------NGGTPLLYAVHGNHVKC 117
Query: 104 IRLVV 108
+++++
Sbjct: 118 VKMLL 122
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 27 KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
KMLLDC + +Y GG +PL +A H + V +LLE+GAD
Sbjct: 86 KMLLDCGVDVNEYDWNGG--TPLLYAVHGNHVKCVKMLLESGAD 127
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
+AL +A GY D V++LLD +V+ ++ G TPL +A G ++KC ++
Sbjct: 87 SALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKCVKM 136
Query: 216 LLSRGASRMSLNCNGWLPLDVARMWG 241
LL GA +G+ +D+A G
Sbjct: 137 LLESGADPTIETDSGYNSMDLAVALG 162
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRC 103
G S L A +KG+ +IV +LL+ G DVN ++ +G T L +A HV+C
Sbjct: 84 GRESALSLACSKGYTDIVKMLLDCGVDVNEYDW----------NGGTPLLYAVHGNHVKC 133
Query: 104 IRLVV 108
+++++
Sbjct: 134 VKMLL 138
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 27 KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
KMLLDC + +Y GG +PL +A H + V +LLE+GAD
Sbjct: 102 KMLLDCGVDVNEYDWNGG--TPLLYAVHGNHVKCVKMLLESGAD 143
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 13/95 (13%)
Query: 129 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYG 188
GD VK D A + VN+ +GG LH AA G + ++ LL A+++A H+
Sbjct: 18 GDLDEVK---DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH- 73
Query: 189 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
TPL A G++ C ++LLS+GA +
Sbjct: 74 ---------ITPLLSAVYEGHVSCVKLLLSKGADK 99
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 20/97 (20%)
Query: 17 AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
A ++GD E K + D N T G PLH+AA G EI+ LL GAD+N
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVN------RTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67
Query: 73 SRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA 109
+ + T L A GHV C++L+++
Sbjct: 68 APDK----------HHITPLLSAVYEGHVSCVKLLLS 94
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 82/215 (38%), Gaps = 43/215 (20%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+ LH AA + LL+ GAD NS++ +GRT LH A
Sbjct: 53 TSLHLAARFARADAAKRLLDAGADANSQDN----------TGRTPLHAA----------- 91
Query: 107 VVADFVPSVPFEVMN--TQIEGDRGDGSSVKSKCDQSALSKFV----------NKAADGG 154
V AD + + N T + DG++ + A+ V N A + G
Sbjct: 92 VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSG 151
Query: 155 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 214
TALH AA + V +LL HAN A TPL AA G+ + +
Sbjct: 152 KTALHWAAAVNNTEAVNILLMHHANRDAQD----------DKDETPLFLAAREGSYEASK 201
Query: 215 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
LL A+R + LP DVA H + LL
Sbjct: 202 ALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 236
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 54/205 (26%)
Query: 43 GGLNS-PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHV 101
G LNS PLH+A +GH +V L++ GAD + + G+ G + +H AA GH
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID--GE--------GCSCIHLAAQFGHT 122
Query: 102 RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
+ ++A G V DQ+ G+T L A
Sbjct: 123 SIVAYLIAK--------------------GQDV-DMMDQN------------GMTPLMWA 149
Query: 162 ALNGY-FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
A + D +LLL TF+ ++ +T LH+A GN +LL G
Sbjct: 150 AYRTHSVDPTRLLL---------TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAG 200
Query: 221 ASRMSLNCNGWLPLDVARMWGRHWL 245
A+ + N G LD+A+ W+
Sbjct: 201 ANVDAQNIKGESALDLAKQRKNVWM 225
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 155 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA--GSTPLHFAACGGNLKC 212
+T LH AA+N D V+ + G +D +G STPLH+A G+L
Sbjct: 43 VTLLHWAAINNRIDLVKYYIS-----------KGAIVDQLGGDLNSTPLHWATRQGHLSM 91
Query: 213 CQVLLSRGAS 222
L+ GA
Sbjct: 92 VVQLMKYGAD 101
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 14 LVSAARDGDFVEAKMLL-DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
L+ AA D + K +L D + + T G N+PL+ A EI L++ GAD+N
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEG--NTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 73 SRN--------YCGQVTRADYLS----------------GRTALHFAAVNGHVRCIRLVV 108
+N Y G R + L+ G AL AA GH+ ++L++
Sbjct: 67 LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126
Query: 109 ADFVPSVPFE 118
D + F+
Sbjct: 127 EDGREDIDFQ 136
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 3 NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNE--- 59
N +G +A L+ AA G K+LL+ + G + + + N+
Sbjct: 103 NRYGGNA----LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158
Query: 60 -IVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
IV LL+ENGAD + ++ SGRTA+ +A G+ +++
Sbjct: 159 DIVKLLMENGADQSIKDN----------SGRTAMDYANQKGYTEISKIL 197
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 195 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 254
G GST LH+ N +C ++LL AS N +G PLD+A+ E LL +
Sbjct: 203 GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL---TQ 259
Query: 255 AVMPRF 260
A+ RF
Sbjct: 260 ALSGRF 265
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 140 QSALSKFV---NKAADGGI---TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
++A+ K V +K D I TAL A N + LL +NV+ F
Sbjct: 48 ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-------- 99
Query: 194 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPS 252
+G TPL ++ G + LL GA+ N G PL VA +GR ++ LL
Sbjct: 100 --SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG 157
Query: 253 SD 254
+D
Sbjct: 158 AD 159
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 42 FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
F G +PL ++ G++E+ LLE+GA+VN RN G+
Sbjct: 99 FSG-KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRA 83
+PL A+ G +EIV LLE GAD+++R+ G A
Sbjct: 136 TPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA 172
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 42/130 (32%)
Query: 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
+++PLH AA +G+ + L+N VN + G TAL++A GH +
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGS----------TALYWACHGGHKDIV 122
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
+ P++ +N Q NK D TALH AA
Sbjct: 123 EXLFTQ--PNIE---LNQQ------------------------NKLGD---TALHAAAWK 150
Query: 165 GYFDCVQLLL 174
GY D VQLLL
Sbjct: 151 GYADIVQLLL 160
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRN 75
++ LH AA KG+ +IV LLL GA + RN
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGARTDLRN 170
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
VN G TAL+ A G+ D V+ L + + + G T LH AA
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLF----TQPNIELNQQNKL-----GDTALHAAAW 149
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
G Q+LL++GA N L D A
Sbjct: 150 KGYADIVQLLLAKGARTDLRNIEKKLAFDXA 180
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 234
G T LH A CG N L++ GA+ S + +GW PL
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL 91
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
GITALH A + V L+ ANV++ H G TPLH AA + C
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSPDSH----------GWTPLHCAASCNDTVIC 103
Query: 214 QVLLSRGAS 222
L+ GA+
Sbjct: 104 MALVQHGAA 112
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 196 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 254
+G++P+H AA G L +VL+ GA + G LP+ +A G + LA SD
Sbjct: 73 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 131
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
SP+H AA G + + +L+E+GADVN + G + +H A GH +
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP----------IHLAVQEGHTAVVS 124
Query: 106 LVVAD 110
+ A+
Sbjct: 125 FLAAE 129
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 149 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
KAADG TALH AAL DC++LLL A V V T++D+
Sbjct: 222 KAADGN-TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 238
G+T LH+AA C ++LL A ++N G LD+AR
Sbjct: 226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 149 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
KAADG TALH AAL DC++LLL A V V T++D+
Sbjct: 203 KAADGN-TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 246
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 238
G+T LH+AA C ++LL A ++N G LD+AR
Sbjct: 207 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 86/224 (38%), Gaps = 57/224 (25%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
N+PL A +VA L + GAD N S R+ALH AA N
Sbjct: 167 NTPLXLAVLARRRRLVAYLXKAGADPTIYN----------KSERSALHQAAAN------- 209
Query: 106 LVVADFVPSVPFEVMNTQIEGD-----RGDGSSV-----KSKCDQSALSKF-VNKAA--- 151
DF V + + +T+++GD R +++ DQ A +K V K A
Sbjct: 210 ---RDFGXXV-YXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVD 265
Query: 152 -DG----------GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GST 199
DG G TALH AA V+ L+ G++ D G T
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVG----------EKGSNKDKQDEDGKT 315
Query: 200 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243
P+ AA G ++ L+ +GAS +++ +A+ H
Sbjct: 316 PIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHH 359
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
SP+H AA G + + +L+E+GADVN + G + +H A GH +
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL----------PIHLAVQEGHTAVVSF 119
Query: 107 VVAD 110
+ A+
Sbjct: 120 LAAE 123
Score = 32.0 bits (71), Expect = 0.82, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 196 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 254
+G++P+H AA G L +VL+ GA + G LP+ +A G + LA SD
Sbjct: 67 SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD 125
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 9/54 (16%)
Query: 296 CAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 349
C +CLE + C H C C L L + PS+ CPLC++ I
Sbjct: 24 CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ---------CPLCKNDI 68
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 131 GSSVKSKCDQSALSKFV-------NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 183
G+S + + + +S F+ N+ G TALH+AA D + LL+ A+ +
Sbjct: 27 GNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQ 86
Query: 184 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWG 241
G TPLH A Q+L+ A+ + +G PL + AR+
Sbjct: 87 D----------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 136
Query: 242 RHWLEPLLAPSSD 254
LE L+ +D
Sbjct: 137 EGMLEDLINSHAD 149
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 83/217 (38%), Gaps = 47/217 (21%)
Query: 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
+ LH AAA ++ LLE AD N ++ G RT LH AAV+ + +
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMG----------RTPLH-AAVSADAQGV-- 105
Query: 107 VVADFVPSVPFEVM----NTQIEGDRGDGSS----VKSKCDQSALSKFVNKAADG----- 153
F+++ T ++ DG++ + L +N AD
Sbjct: 106 ----------FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 155
Query: 154 -GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 212
G +ALH AA D +LL AN TPL AA G+ +
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQN----------NREETPLFLAAREGSYET 205
Query: 213 CQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
+VLL A+R + LP D+A+ H + LL
Sbjct: 206 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 198 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVM 257
TPL AA G+ + +VLL A+R + LP D+A+ H + LL +
Sbjct: 192 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 251
Query: 258 PRFH 261
P+ H
Sbjct: 252 PQLH 255
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 131 GSSVKSKCDQSALSKFV-------NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 183
G+S + + + +S F+ N+ G TALH+AA D + LL+ A+ +
Sbjct: 28 GNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ 87
Query: 184 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWG 241
G TPLH A Q+L+ A+ + +G PL + AR+
Sbjct: 88 D----------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 137
Query: 242 RHWLEPLLAPSSD 254
LE L+ +D
Sbjct: 138 EGMLEDLINSHAD 150
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%)
Query: 198 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVM 257
TPL AA G+ + +VLL A+R + LP D+A+ H + LL +
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218
Query: 258 PRFH 261
P+ H
Sbjct: 219 PQLH 222
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
N+ G TALH+AA D + LL+ A+ + G TPLH A
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD----------NMGRTPLHAAVSA 68
Query: 208 GNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWGRHWLEPLLAPSSD 254
Q+L+ A+ + +G PL + AR+ LE L+ +D
Sbjct: 69 DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD 117
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 131 GSSVKSKCDQSALSKFV-------NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 183
G+S + + + +S F+ N+ G TALH+AA D + LL+ A+ +
Sbjct: 27 GNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQ 86
Query: 184 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDV-ARMWG 241
G TPLH A Q+L+ A+ + +G PL + AR+
Sbjct: 87 D----------NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 136
Query: 242 RHWLEPLLAPSSD 254
LE L+ +D
Sbjct: 137 EGMLEDLINSHAD 149
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 198 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
TPL AA G+ + +VLL A+R + LP D+A+ H + LL
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 146 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 205
+VN D + A N C + LL ANV+ AG PLH A
Sbjct: 228 WVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQAD----------SAGRGPLHHAT 276
Query: 206 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
G+ + L RGA + + G PL +A
Sbjct: 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
PLH A GH + L L+ GAD+ +R+ G+
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGR 302
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 146 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 205
+VN D + A N C + LL ANV+ AG PLH A
Sbjct: 228 WVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQAD----------SAGRGPLHHAT 276
Query: 206 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
G+ + L RGA + + G PL +A
Sbjct: 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
PLH A GH + L L+ GAD+ +R+ G+
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGR 302
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 146 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 205
+VN D + A N C + LL ANV+ AG PLH A
Sbjct: 228 WVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVNQAD----------SAGRGPLHHAT 276
Query: 206 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
G+ + L RGA + + G PL +A
Sbjct: 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
PLH A GH + L L+ GAD+ +R+ G+
Sbjct: 271 PLHHATILGHTGLACLFLKRGADLGARDSEGR 302
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 43 GGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
G ++ L AAA+G E V LLE GAD N+ N G+
Sbjct: 10 GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGR 46
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 198 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
TPL AA G+ + +VLL A+R + LP D+A+ H + LL
Sbjct: 156 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 207
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
+S LH A K + V LL+ENGADV+ R CG+
Sbjct: 91 HSALHIAIEKRSLQCVKLLVENGADVHLRA-CGR 123
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ 79
+S LH A K + V LL+ENGADV+ R CG+
Sbjct: 104 HSALHIAIEKRSLQCVKLLVENGADVHLRA-CGR 136
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
PLH AA +IV +LL +G D Q G TAL++A +G+ + ++L
Sbjct: 65 PLHQAATLEDTKIVKILLFSGLD------DSQFDD----KGNTALYYAVDSGNXQTVKLF 114
Query: 108 V 108
V
Sbjct: 115 V 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,485,397
Number of Sequences: 62578
Number of extensions: 585654
Number of successful extensions: 1862
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 560
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)