Query 011309
Match_columns 489
No_of_seqs 430 out of 2205
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 05:28:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oy3_D Transcription factor in 100.0 8E-37 2.7E-41 298.4 21.2 236 10-272 9-264 (282)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 3.8E-36 1.3E-40 291.5 20.8 221 9-253 9-246 (253)
3 2f8y_A Notch homolog 1, transl 100.0 6.3E-35 2.1E-39 276.0 24.6 194 10-258 25-219 (223)
4 3hra_A Ankyrin repeat family p 100.0 6.5E-35 2.2E-39 271.4 23.8 191 9-253 4-201 (201)
5 3b7b_A Euchromatic histone-lys 100.0 7E-35 2.4E-39 278.2 24.5 205 10-272 11-216 (237)
6 3aji_A 26S proteasome non-ATPa 100.0 8.2E-35 2.8E-39 276.7 24.8 207 9-273 5-212 (231)
7 3ljn_A Hypothetical protein; a 100.0 5.2E-36 1.8E-40 305.4 17.3 260 11-303 21-312 (364)
8 2xai_A ASB-9, ankyrin repeat a 100.0 5E-35 1.7E-39 285.2 23.3 200 11-271 4-204 (261)
9 1k1a_A B-cell lymphoma 3-encod 100.0 9.7E-35 3.3E-39 277.3 24.5 208 10-271 9-221 (241)
10 4g8k_A 2-5A-dependent ribonucl 100.0 9.3E-35 3.2E-39 293.1 25.5 230 11-253 26-296 (337)
11 2dzn_A Probable 26S proteasome 100.0 5.7E-35 1.9E-39 276.9 21.2 206 11-272 3-214 (228)
12 2rfa_A Transient receptor pote 100.0 8E-35 2.7E-39 277.3 21.5 203 11-255 4-222 (232)
13 1wdy_A 2-5A-dependent ribonucl 100.0 2E-34 7E-39 280.6 24.6 234 11-272 6-259 (285)
14 3aji_A 26S proteasome non-ATPa 100.0 9.3E-35 3.2E-39 276.3 21.0 189 9-252 39-227 (231)
15 1wdy_A 2-5A-dependent ribonucl 100.0 6.7E-34 2.3E-38 277.0 26.4 225 10-258 39-282 (285)
16 3utm_A Tankyrase-1; tankyrase, 100.0 2.8E-34 9.6E-39 288.5 23.7 237 10-272 58-319 (351)
17 4gpm_A Engineered protein OR26 100.0 1.9E-34 6.7E-39 264.3 20.4 161 10-225 4-164 (169)
18 3d9h_A CDNA FLJ77766, highly s 100.0 3.5E-34 1.2E-38 283.4 23.7 201 10-271 59-260 (285)
19 4b93_B Ankyrin repeat domain-c 100.0 8.7E-35 3E-39 286.1 19.0 204 11-271 12-223 (269)
20 1s70_B 130 kDa myosin-binding 100.0 1.2E-34 4E-39 286.3 18.9 223 10-254 40-289 (299)
21 3utm_A Tankyrase-1; tankyrase, 100.0 9.2E-34 3.1E-38 284.7 25.5 209 11-272 25-286 (351)
22 1ikn_D Protein (I-kappa-B-alph 100.0 1.2E-35 4.2E-40 284.2 11.2 199 10-257 8-211 (236)
23 2fo1_E LIN-12 protein; beta-ba 100.0 1.5E-34 5.1E-39 297.0 18.5 220 9-253 124-369 (373)
24 1n11_A Ankyrin; clathrin, BAND 100.0 1.6E-33 5.5E-38 293.8 25.4 227 10-251 113-365 (437)
25 1k1a_A B-cell lymphoma 3-encod 100.0 3.4E-34 1.2E-38 273.6 17.4 189 10-253 46-239 (241)
26 4gpm_A Engineered protein OR26 100.0 1.3E-33 4.6E-38 258.7 20.5 155 47-254 6-160 (169)
27 4b93_B Ankyrin repeat domain-c 100.0 1.8E-34 6.3E-39 283.7 15.1 182 11-249 53-235 (269)
28 2etb_A Transient receptor pote 100.0 2.6E-34 9E-39 278.3 15.7 212 10-253 2-244 (256)
29 1n11_A Ankyrin; clathrin, BAND 100.0 1E-32 3.5E-37 287.7 26.3 227 11-252 15-267 (437)
30 3b7b_A Euchromatic histone-lys 100.0 3.6E-33 1.2E-37 266.3 20.7 182 10-246 44-226 (237)
31 3kea_A K1L; tropism, ANK repea 100.0 5.9E-34 2E-38 281.9 15.6 191 10-258 31-224 (285)
32 2xai_A ASB-9, ankyrin repeat a 100.0 2.2E-33 7.6E-38 273.5 19.3 185 10-253 36-220 (261)
33 2dzn_A Probable 26S proteasome 100.0 5.5E-33 1.9E-37 263.3 19.6 186 10-251 36-226 (228)
34 3eu9_A Huntingtin-interacting 100.0 6.6E-33 2.3E-37 263.5 20.3 222 10-254 9-234 (240)
35 3d9h_A CDNA FLJ77766, highly s 100.0 3.8E-33 1.3E-37 275.9 19.2 189 10-257 92-280 (285)
36 4g8k_A 2-5A-dependent ribonucl 100.0 2.1E-32 7.3E-37 275.8 23.9 233 10-257 59-329 (337)
37 1oy3_D Transcription factor in 100.0 5.7E-33 1.9E-37 271.0 18.8 188 10-242 45-270 (282)
38 2f8y_A Notch homolog 1, transl 100.0 1E-32 3.4E-37 260.8 19.8 194 21-271 2-196 (223)
39 2pnn_A Transient receptor pote 100.0 1.5E-33 5E-38 275.9 12.9 208 9-255 12-258 (273)
40 3jxi_A Vanilloid receptor-rela 100.0 2.1E-33 7.3E-38 272.3 13.5 207 9-254 4-249 (260)
41 2fo1_E LIN-12 protein; beta-ba 100.0 7.3E-33 2.5E-37 284.4 13.9 250 10-283 94-359 (373)
42 4hbd_A KN motif and ankyrin re 100.0 8.6E-33 3E-37 272.4 11.9 188 12-254 78-274 (276)
43 1s70_B 130 kDa myosin-binding 100.0 3.2E-31 1.1E-35 261.6 22.6 201 15-258 3-261 (299)
44 3ljn_A Hypothetical protein; a 100.0 1.2E-31 4.2E-36 273.0 18.3 207 42-272 17-250 (364)
45 3v30_A DNA-binding protein rfx 100.0 1.3E-31 4.5E-36 243.6 15.8 168 11-233 3-171 (172)
46 3v31_A Ankyrin repeat family A 100.0 6.1E-31 2.1E-35 238.0 18.0 156 44-252 2-157 (167)
47 1yyh_A HN1;, notch 1, ankyrin 100.0 2.3E-31 7.7E-36 257.9 15.9 219 36-286 3-239 (253)
48 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.4E-30 4.9E-35 236.7 19.9 155 45-252 14-168 (169)
49 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.1E-30 3.8E-35 234.6 17.8 157 10-222 5-162 (162)
50 2rfm_A Putative ankyrin repeat 100.0 7.6E-31 2.6E-35 243.1 17.1 156 44-252 34-189 (192)
51 2rfa_A Transient receptor pote 100.0 2.1E-30 7.3E-35 246.6 20.5 189 45-271 3-202 (232)
52 1awc_B Protein (GA binding pro 100.0 3.8E-30 1.3E-34 229.8 19.0 151 46-250 3-153 (153)
53 2y1l_E Darpin-8.4; hydrolase-i 100.0 6.8E-30 2.3E-34 232.2 20.1 157 9-220 13-169 (169)
54 1ihb_A P18-INK4C(INK6), cyclin 100.0 2.8E-30 9.6E-35 232.0 16.4 154 46-253 6-160 (162)
55 3v31_A Ankyrin repeat family A 100.0 4.1E-30 1.4E-34 232.6 16.8 161 9-224 2-162 (167)
56 3v30_A DNA-binding protein rfx 100.0 5.3E-30 1.8E-34 233.0 17.0 157 45-254 2-159 (172)
57 1sw6_A Regulatory protein SWI6 100.0 1.2E-30 4.2E-35 263.1 12.2 196 13-274 100-324 (327)
58 3f6q_A Integrin-linked protein 100.0 7.7E-30 2.6E-34 233.9 16.2 165 11-230 6-171 (179)
59 3kea_A K1L; tropism, ANK repea 100.0 1.3E-30 4.4E-35 257.9 10.1 180 10-253 62-244 (285)
60 1ikn_D Protein (I-kappa-B-alph 100.0 3.1E-30 1.1E-34 246.6 12.5 182 10-240 45-229 (236)
61 2rfm_A Putative ankyrin repeat 100.0 1.9E-29 6.5E-34 233.7 16.5 156 10-220 35-190 (192)
62 1awc_B Protein (GA binding pro 100.0 6.4E-29 2.2E-33 221.9 19.3 150 11-216 3-152 (153)
63 3twr_A Tankyrase-2; ankyrin re 100.0 1.8E-29 6E-34 227.9 15.6 162 5-221 3-164 (165)
64 3twr_A Tankyrase-2; ankyrin re 100.0 1.8E-29 6.1E-34 227.9 15.1 156 45-254 8-164 (165)
65 1bd8_A P19INK4D CDK4/6 inhibit 100.0 4.9E-29 1.7E-33 222.7 17.3 153 45-252 2-155 (156)
66 3f6q_A Integrin-linked protein 100.0 7.2E-29 2.4E-33 227.4 16.2 160 45-257 5-166 (179)
67 2pnn_A Transient receptor pote 100.0 3.2E-29 1.1E-33 245.0 14.1 184 9-235 53-272 (273)
68 1ycs_B 53BP2, P53BP2; ankyrin 100.0 3.8E-30 1.3E-34 247.7 7.4 185 10-251 5-200 (239)
69 1bd8_A P19INK4D CDK4/6 inhibit 100.0 2.8E-28 9.5E-33 217.8 17.6 153 10-219 2-155 (156)
70 2vge_A RELA-associated inhibit 100.0 1.3E-31 4.5E-36 257.1 -4.9 179 11-247 22-205 (229)
71 3hra_A Ankyrin repeat family p 100.0 9.5E-28 3.2E-32 222.9 21.1 170 46-272 6-184 (201)
72 2etb_A Transient receptor pote 100.0 4.9E-29 1.7E-33 241.2 11.4 173 9-224 42-248 (256)
73 3eu9_A Huntingtin-interacting 100.0 8.4E-28 2.9E-32 228.1 18.9 200 45-271 9-215 (240)
74 3jxi_A Vanilloid receptor-rela 100.0 5E-29 1.7E-33 241.4 10.0 172 10-224 46-252 (260)
75 1sw6_A Regulatory protein SWI6 99.9 2.2E-28 7.4E-33 246.7 9.8 188 21-272 58-289 (327)
76 1ycs_B 53BP2, P53BP2; ankyrin 99.9 4.4E-28 1.5E-32 233.2 10.9 154 45-252 5-161 (239)
77 4hbd_A KN motif and ankyrin re 99.9 3.6E-27 1.2E-31 232.1 17.0 156 10-220 111-273 (276)
78 2vge_A RELA-associated inhibit 99.9 4.9E-29 1.7E-33 239.1 2.9 164 26-241 1-167 (229)
79 1bi7_B P16INK4A, MTS1, multipl 99.9 1.6E-27 5.4E-32 213.9 10.3 140 44-237 11-151 (156)
80 1d9s_A Cyclin-dependent kinase 99.9 7.4E-27 2.5E-31 204.6 12.7 134 33-222 2-136 (136)
81 3t8k_A Uncharacterized protein 99.9 4.2E-27 1.5E-31 218.7 9.1 152 46-252 7-176 (186)
82 3t8k_A Uncharacterized protein 99.9 3.3E-27 1.1E-31 219.4 7.3 160 12-227 8-184 (186)
83 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.1E-25 1.1E-29 189.6 16.2 125 45-222 2-126 (126)
84 2aja_A Ankyrin repeat family p 99.9 2E-27 6.7E-32 244.7 1.8 152 11-223 93-251 (376)
85 2jab_A H10-2-G3; HER2, darpin, 99.9 3.1E-25 1.1E-29 194.2 15.5 124 44-220 13-136 (136)
86 1d9s_A Cyclin-dependent kinase 99.9 1.2E-25 4.1E-30 196.9 11.2 132 68-252 2-133 (136)
87 1bi7_B P16INK4A, MTS1, multipl 99.9 2.3E-25 8E-30 199.6 11.0 140 9-204 11-151 (156)
88 3c5r_A BARD-1, BRCA1-associate 99.9 2E-25 7E-30 195.3 9.8 133 68-254 1-133 (137)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 1.3E-24 4.3E-29 190.3 13.3 124 86-252 12-135 (136)
90 3deo_A Signal recognition part 99.9 7.1E-26 2.4E-30 208.6 4.5 165 17-252 7-181 (183)
91 2b0o_E UPLC1; arfgap, structur 99.9 1.5E-24 5E-29 216.7 13.2 139 46-243 152-299 (301)
92 1n0r_A 4ANK, 4 ankyrin repeats 99.9 9.9E-24 3.4E-28 180.1 14.7 124 87-253 1-124 (126)
93 3ehr_A Osteoclast-stimulating 99.9 2E-24 6.8E-29 204.6 9.6 133 46-231 74-207 (222)
94 3c5r_A BARD-1, BRCA1-associate 99.9 2.6E-24 8.9E-29 188.2 8.8 126 44-222 9-134 (137)
95 2aja_A Ankyrin repeat family p 99.9 1.9E-25 6.6E-30 229.9 1.7 174 13-253 68-248 (376)
96 3ui2_A Signal recognition part 99.9 8.5E-24 2.9E-28 204.2 12.7 137 45-252 45-182 (244)
97 2b0o_E UPLC1; arfgap, structur 99.9 1.5E-23 5.2E-28 209.3 12.0 142 10-210 151-299 (301)
98 3aaa_C Myotrophin, protein V-1 99.9 9.2E-23 3.1E-27 175.1 14.2 117 87-249 6-122 (123)
99 3ui2_A Signal recognition part 99.9 5.7E-23 1.9E-27 198.4 12.8 139 11-222 46-185 (244)
100 3aaa_C Myotrophin, protein V-1 99.9 5.9E-23 2E-27 176.3 10.9 110 45-207 7-116 (123)
101 3deo_A Signal recognition part 99.9 1.3E-22 4.3E-27 186.8 13.8 136 11-219 45-181 (183)
102 3lvq_E ARF-GAP with SH3 domain 99.9 2.4E-22 8.2E-27 214.1 16.8 137 46-241 133-278 (497)
103 3ehr_A Osteoclast-stimulating 99.9 1.4E-22 4.9E-27 191.8 10.3 126 87-255 72-198 (222)
104 3jue_A Arfgap with coiled-coil 99.9 3.2E-22 1.1E-26 205.2 13.5 144 46-242 200-349 (368)
105 3jue_A Arfgap with coiled-coil 99.9 1.4E-21 4.7E-26 200.5 14.4 164 11-224 200-366 (368)
106 1dcq_A PYK2-associated protein 99.9 9.1E-21 3.1E-25 187.0 18.4 166 11-223 67-264 (278)
107 3lvq_E ARF-GAP with SH3 domain 99.9 2.4E-21 8.2E-26 206.4 15.2 129 11-182 133-268 (497)
108 1dcq_A PYK2-associated protein 99.8 1E-20 3.5E-25 186.6 16.3 128 11-181 131-265 (278)
109 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.8E-20 6.3E-25 152.8 12.3 92 45-179 2-93 (93)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.8E-20 6.3E-25 152.8 11.2 91 153-253 1-91 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.8 1.2E-20 4.1E-25 159.7 8.0 107 85-234 6-112 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.8 7.5E-20 2.6E-24 154.8 7.9 100 44-186 8-107 (115)
113 2zgd_A 3 repeat synthetic anky 99.8 1.3E-18 4.6E-23 146.6 10.7 94 147-250 17-110 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.3E-16 4.3E-21 134.4 11.5 87 9-107 23-109 (110)
115 2vje_A E3 ubiquitin-protein li 98.2 4.2E-07 1.4E-11 68.6 2.0 54 290-355 5-61 (64)
116 2ea5_A Cell growth regulator w 98.2 7.3E-07 2.5E-11 68.1 2.8 52 290-357 12-64 (68)
117 2vje_B MDM4 protein; proto-onc 98.1 6.8E-07 2.3E-11 67.2 1.9 53 291-355 5-60 (63)
118 4ic3_A E3 ubiquitin-protein li 97.9 3.8E-06 1.3E-10 65.2 1.7 48 292-355 23-71 (74)
119 2yho_A E3 ubiquitin-protein li 97.8 7.4E-06 2.5E-10 64.4 2.5 48 293-356 18-66 (79)
120 2ecg_A Baculoviral IAP repeat- 97.8 6.7E-06 2.3E-10 63.9 2.2 47 293-355 25-72 (75)
121 2egp_A Tripartite motif-contai 97.7 3.6E-05 1.2E-09 59.9 4.5 56 291-351 10-65 (79)
122 2ecw_A Tripartite motif-contai 97.6 6.4E-05 2.2E-09 59.1 4.8 55 291-351 17-71 (85)
123 1chc_A Equine herpes virus-1 r 97.6 2.4E-05 8.3E-10 59.1 2.2 54 291-356 3-57 (68)
124 2ecm_A Ring finger and CHY zin 97.6 2.9E-05 9.8E-10 56.0 2.3 49 291-351 3-55 (55)
125 2d8t_A Dactylidin, ring finger 97.5 2.7E-05 9.1E-10 59.6 2.0 51 290-352 12-62 (71)
126 2ep4_A Ring finger protein 24; 97.5 5.6E-05 1.9E-09 58.1 3.6 56 290-357 12-70 (74)
127 2ecv_A Tripartite motif-contai 97.5 0.0001 3.5E-09 58.0 4.7 56 290-351 16-71 (85)
128 2ea6_A Ring finger protein 4; 97.5 4.8E-05 1.7E-09 57.4 2.5 50 290-351 12-68 (69)
129 2kiz_A E3 ubiquitin-protein li 97.5 8.5E-05 2.9E-09 56.3 3.8 52 290-353 11-65 (69)
130 2djb_A Polycomb group ring fin 97.4 9.8E-05 3.3E-09 56.6 3.9 52 290-353 12-64 (72)
131 2ysl_A Tripartite motif-contai 97.4 7.3E-05 2.5E-09 57.3 2.9 52 291-351 18-69 (73)
132 1iym_A EL5; ring-H2 finger, ub 97.4 6.8E-05 2.3E-09 54.0 2.4 48 291-350 3-54 (55)
133 4ayc_A E3 ubiquitin-protein li 97.4 5.7E-05 2E-09 65.8 2.2 47 294-352 54-100 (138)
134 3ng2_A RNF4, snurf, ring finge 97.3 6.1E-05 2.1E-09 57.3 1.9 50 290-351 7-63 (71)
135 2ct2_A Tripartite motif protei 97.3 0.00012 4.1E-09 58.1 3.6 53 290-351 12-68 (88)
136 1bor_A Transcription factor PM 97.3 6.5E-05 2.2E-09 54.7 1.1 45 291-350 4-48 (56)
137 1e4u_A Transcriptional repress 97.2 0.00021 7E-09 55.9 3.7 52 290-352 8-63 (78)
138 2xeu_A Ring finger protein 4; 97.2 8.5E-05 2.9E-09 55.1 1.4 48 292-351 2-56 (64)
139 2ecn_A Ring finger protein 141 97.2 5.7E-05 2E-09 57.4 0.4 51 290-353 12-62 (70)
140 2ect_A Ring finger protein 126 97.2 0.00022 7.7E-09 55.3 3.6 54 290-355 12-68 (78)
141 1x4j_A Ring finger protein 38; 97.2 0.00012 4E-09 56.5 1.9 50 290-351 20-72 (75)
142 2l0b_A E3 ubiquitin-protein li 97.2 0.00013 4.3E-09 58.8 2.1 50 290-351 37-89 (91)
143 2csy_A Zinc finger protein 183 97.2 0.00022 7.4E-09 55.9 3.3 49 291-351 13-61 (81)
144 2ecy_A TNF receptor-associated 97.2 0.00022 7.7E-09 53.5 3.1 50 291-351 13-62 (66)
145 3ztg_A E3 ubiquitin-protein li 97.1 0.00028 9.4E-09 56.7 3.6 51 291-351 11-62 (92)
146 1g25_A CDK-activating kinase a 97.1 0.00018 6.3E-09 53.8 2.0 48 293-351 3-55 (65)
147 2yur_A Retinoblastoma-binding 97.1 0.00025 8.6E-09 54.6 2.8 51 291-351 13-64 (74)
148 1jm7_A BRCA1, breast cancer ty 97.1 0.00023 7.9E-09 59.2 2.7 51 293-352 21-71 (112)
149 3t6p_A Baculoviral IAP repeat- 97.0 0.00015 5E-09 72.9 1.4 49 292-356 294-343 (345)
150 2y1n_A E3 ubiquitin-protein li 97.0 0.00029 9.8E-09 71.4 3.4 53 293-356 332-384 (389)
151 3lrq_A E3 ubiquitin-protein li 96.9 0.00028 9.6E-09 57.8 1.8 50 291-351 20-70 (100)
152 3fl2_A E3 ubiquitin-protein li 96.9 0.0004 1.4E-08 59.1 2.9 48 293-351 52-99 (124)
153 1t1h_A Gspef-atpub14, armadill 96.8 0.00038 1.3E-08 54.0 1.9 59 291-360 6-64 (78)
154 2y43_A E3 ubiquitin-protein li 96.8 0.00044 1.5E-08 56.3 2.2 48 292-351 21-69 (99)
155 1z6u_A NP95-like ring finger p 96.7 0.00058 2E-08 60.3 2.5 49 293-352 78-126 (150)
156 3l11_A E3 ubiquitin-protein li 96.7 0.00038 1.3E-08 58.3 1.2 51 291-352 13-63 (115)
157 1v87_A Deltex protein 2; ring- 96.6 0.00074 2.5E-08 56.4 2.3 54 292-352 24-95 (114)
158 2ckl_A Polycomb group ring fin 96.6 0.00072 2.4E-08 56.0 2.0 50 291-352 13-63 (108)
159 2ecj_A Tripartite motif-contai 96.6 0.0018 6.3E-08 46.7 3.8 47 290-345 12-58 (58)
160 3hct_A TNF receptor-associated 96.4 0.0013 4.4E-08 55.4 2.6 58 289-357 14-71 (118)
161 2ecl_A Ring-box protein 2; RNF 96.4 0.001 3.4E-08 52.2 1.8 47 292-350 14-75 (81)
162 2ckl_B Ubiquitin ligase protei 96.4 0.00092 3.1E-08 59.8 1.8 51 292-353 53-104 (165)
163 4ap4_A E3 ubiquitin ligase RNF 96.4 0.0018 6.1E-08 55.2 3.3 50 291-352 5-61 (133)
164 2ysj_A Tripartite motif-contai 96.4 0.0016 5.3E-08 48.2 2.5 46 291-345 18-63 (63)
165 1jm7_B BARD1, BRCA1-associated 96.2 0.0012 4.1E-08 55.5 1.3 45 292-350 21-66 (117)
166 1rmd_A RAG1; V(D)J recombinati 96.1 0.0022 7.5E-08 53.7 2.3 50 293-353 23-72 (116)
167 4ap4_A E3 ubiquitin ligase RNF 95.6 0.0037 1.3E-07 53.1 1.6 51 290-352 69-126 (133)
168 3knv_A TNF receptor-associated 95.6 0.0021 7.3E-08 56.0 0.1 49 290-349 28-76 (141)
169 3dpl_R Ring-box protein 1; ubi 95.5 0.0047 1.6E-07 51.1 1.7 46 292-349 36-99 (106)
170 4a0k_B E3 ubiquitin-protein li 95.0 0.0044 1.5E-07 52.1 0.2 47 291-349 46-110 (117)
171 2kr4_A Ubiquitin conjugation f 94.9 0.0083 2.8E-07 47.4 1.4 55 291-357 12-66 (85)
172 2d8s_A Cellular modulator of i 94.8 0.015 5E-07 45.5 2.6 58 290-357 12-76 (80)
173 3hcs_A TNF receptor-associated 94.7 0.013 4.5E-07 52.4 2.7 57 289-356 14-70 (170)
174 2c2l_A CHIP, carboxy terminus 94.7 0.0059 2E-07 58.8 0.2 59 291-360 206-264 (281)
175 2kre_A Ubiquitin conjugation f 94.4 0.007 2.4E-07 49.4 -0.1 55 291-357 27-81 (100)
176 1wim_A KIAA0161 protein; ring 94.3 0.0087 3E-07 48.0 0.3 53 292-348 4-61 (94)
177 1wgm_A Ubiquitin conjugation f 94.0 0.01 3.4E-07 48.3 0.2 55 291-357 20-75 (98)
178 2f42_A STIP1 homology and U-bo 91.8 0.033 1.1E-06 50.4 0.2 59 291-360 104-162 (179)
179 2yu4_A E3 SUMO-protein ligase 91.8 0.039 1.3E-06 44.3 0.7 61 291-357 5-69 (94)
180 3vk6_A E3 ubiquitin-protein li 91.6 0.086 2.9E-06 42.5 2.4 39 306-355 15-53 (101)
181 3htk_C E3 SUMO-protein ligase 88.6 0.15 5.1E-06 48.6 1.7 53 290-352 178-233 (267)
182 3k1l_B Fancl; UBC, ring, RWD, 73.7 0.83 2.8E-05 45.2 0.6 57 290-350 305-372 (381)
183 3mkq_B Coatomer subunit alpha; 67.0 17 0.00058 32.4 7.7 136 9-222 7-144 (177)
184 1vyx_A ORF K3, K3RING; zinc-bi 58.0 5.7 0.00019 28.6 2.4 50 290-349 3-57 (60)
185 4g26_A Pentatricopeptide repea 55.0 36 0.0012 35.2 8.9 150 14-224 33-209 (501)
186 2bay_A PRE-mRNA splicing facto 54.8 4 0.00014 29.5 1.0 48 294-353 4-52 (61)
187 2ct0_A Non-SMC element 1 homol 53.3 8.6 0.00029 29.1 2.8 51 290-350 12-63 (74)
188 1p1p_A AA-conotoxin PIVA; neur 52.9 9.3 0.00032 22.0 2.1 18 411-428 3-20 (26)
189 3zrh_A Ubiquitin thioesterase 44.3 35 0.0012 34.3 6.2 51 16-66 28-90 (454)
190 4ayb_P DNA-directed RNA polyme 42.1 16 0.00055 24.9 2.3 26 332-357 16-41 (48)
191 2ko5_A Ring finger protein Z; 28.2 17 0.00058 28.7 0.8 57 289-358 24-80 (99)
192 1gp8_A Protein (scaffolding pr 25.2 48 0.0017 21.5 2.4 20 12-31 15-34 (40)
193 3zrh_A Ubiquitin thioesterase 23.2 1.2E+02 0.0041 30.5 6.0 59 51-109 28-90 (454)
No 1
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=8e-37 Score=298.40 Aligned_cols=236 Identities=22% Similarity=0.190 Sum_probs=180.9
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCC---CcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPC---LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYL 86 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~---l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~ 86 (489)
..||||+|++.|+.++|++|++.|++ ++..+.. |+||||+|+..|+.++|++|+++|++++.+|.
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~---------- 76 (282)
T 1oy3_D 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL--GQTALHLAAILGEASTVEKLYAAGAGVLVAER---------- 76 (282)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT----------
T ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------
Confidence 45789999999999999999999988 4554444 49999999999999999999999999999998
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccc----------------ccccccCCchhhhhhhhhhhhhhhhccc
Q 011309 87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT----------------QIEGDRGDGSSVKSKCDQSALSKFVNKA 150 (489)
Q Consensus 87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l----------------~~~~~~~~~~~~~~~~~~~~~~~~in~~ 150 (489)
.|+||||+|+..|+.+++++|++.+........... ......... .............++..
T Consensus 77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 154 (282)
T 1oy3_D 77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE--NEEEPRDEDWRLQLEAE 154 (282)
T ss_dssp TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------CCCGGGGTTCC
T ss_pred CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc--hhhhhhhhhhhhcCCCc
Confidence 999999999999999999999987654222111100 000000000 00001111223457889
Q ss_pred cCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Q 011309 151 ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 230 (489)
Q Consensus 151 d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G 230 (489)
+..|.||||+|+..|+.++|++|+++|++++..+.. .|.||||+|+..|+.++|++|+++|++++.+|..|
T Consensus 155 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~---------~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g 225 (282)
T 1oy3_D 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT---------CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225 (282)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC---------CCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Confidence 999999999999999999999999999999998743 29999999999999999999999999999999999
Q ss_pred CcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHH
Q 011309 231 WLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLS 272 (489)
Q Consensus 231 ~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~ 272 (489)
+||||+|+..|+.+++++|.+. ++++.. +..+.+|+..
T Consensus 226 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~----~~~g~tpl~~ 264 (282)
T 1oy3_D 226 RTPLGSALLRPNPILARLLRAHGAPEPED----GGDKLSPCSS 264 (282)
T ss_dssp CCHHHHHHTSSCHHHHHHHHHTTCCCCCC----C---------
T ss_pred CCHHHHHHHcCCcHHHHHHHHcCCCcCcC----CCcccccccc
Confidence 9999999999999998877654 554443 4556677553
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.8e-36 Score=291.48 Aligned_cols=221 Identities=24% Similarity=0.206 Sum_probs=144.3
Q ss_pred CchHHHHHHHHcC-------------CHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcC
Q 011309 9 ASGERLVSAARDG-------------DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN 75 (489)
Q Consensus 9 ~s~t~L~~Aa~~G-------------~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d 75 (489)
...||||+|+..| +.++|++|++.|++++...+. .|+||||+|+..|+.++|++|+++|++++..|
T Consensus 9 ~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 87 (253)
T 1yyh_A 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR-TGETALHLAARYSRSDAAKRLLEASADANIQD 87 (253)
T ss_dssp -------------------------------------------CCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 3467899999987 999999999999998654322 34999999999999999999999999999999
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccC----CCCCccccccccccccCCchhhhhhhhhhhhhhhhcccc
Q 011309 76 YCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV----PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA 151 (489)
Q Consensus 76 ~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d 151 (489)
. .|+||||+|+..|+.+++++|++.+. ..+..+.++++.+...+....+..+... +..++..|
T Consensus 88 ~----------~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d 154 (253)
T 1yyh_A 88 N----------MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVD 154 (253)
T ss_dssp T----------TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT---TCCTTCBC
T ss_pred C----------CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc---CCCCCCcC
Confidence 8 99999999999999999999998754 2233455666666666665555554432 33466677
Q ss_pred CCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Q 011309 152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 231 (489)
Q Consensus 152 ~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~ 231 (489)
..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus 155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~ 224 (253)
T 1yyh_A 155 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR----------EETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 224 (253)
T ss_dssp TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCC
Confidence 77777777777777777777777777777777655 77777777777777777777777777777777777
Q ss_pred cHHHHHHHcCcHhHHHHhcCCC
Q 011309 232 LPLDVARMWGRHWLEPLLAPSS 253 (489)
Q Consensus 232 TpL~~A~~~g~~~i~~LL~~~~ 253 (489)
|||++|++.|+.+|+.+|....
T Consensus 225 tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 225 LPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp CHHHHHHHTTCHHHHHHHHC--
T ss_pred CHHHHHHHcCCHHHHHHHHHHh
Confidence 7777777777777777775544
No 3
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6.3e-35 Score=276.00 Aligned_cols=194 Identities=29% Similarity=0.289 Sum_probs=179.3
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCC-CCCCcCCCCCcccccCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSG 88 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Ga-d~n~~d~~g~i~~~d~~~G 88 (489)
..||||+|++.|+.++|++|++.|++++..+..+ +||||+|+..|+.+++++|+++++ +++..+. .|
T Consensus 25 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----------~g 92 (223)
T 2f8y_A 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMG--RTPLHAAVSADAQGVFQILIRNRATDLDARMH----------DG 92 (223)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT----------TC
T ss_pred CCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC----------CC
Confidence 4579999999999999999999999988776655 899999999999999999999987 8888887 89
Q ss_pred ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309 89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168 (489)
Q Consensus 89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e 168 (489)
.||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|+.+
T Consensus 93 ~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~ 139 (223)
T 2f8y_A 93 TTPLILAARLAVEGMLEDLINSHAD---------------------------------VNAVDDLGKSALHWAAAVNNVD 139 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCBCTTSCBHHHHHHHTTCHH
T ss_pred CcHHHHHHHhCcHHHHHHHHHcCCC---------------------------------CcCcCCCCCcHHHHHHHcCCHH
Confidence 9999999999999999999986543 7778889999999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHH
Q 011309 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL 248 (489)
Q Consensus 169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~L 248 (489)
++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++
T Consensus 140 ~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~ 209 (223)
T 2f8y_A 140 AAVVLLKNGANKDMQNNR----------EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 209 (223)
T ss_dssp HHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCC----------CcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHH
Confidence 999999999999999876 9999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCC
Q 011309 249 LAPSSDAVMP 258 (489)
Q Consensus 249 L~~~~~~~~~ 258 (489)
|.+.+....+
T Consensus 210 L~~~g~~~~~ 219 (223)
T 2f8y_A 210 LDEYNLVRSP 219 (223)
T ss_dssp HHHTTCSSCC
T ss_pred HHHcCCCccc
Confidence 9887765433
No 4
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=6.5e-35 Score=271.44 Aligned_cols=191 Identities=25% Similarity=0.270 Sum_probs=175.4
Q ss_pred CchHHHHHHHHcCCHHHHHHHhhcCC-CCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309 9 ASGERLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLS 87 (489)
Q Consensus 9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~-~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~ 87 (489)
...++||.|+..|+.+.|+.|++.+. +++..+..+ +||||+|+..|+.++|++|+++|++++..+. .
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~ 71 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEG--NTPLNIAVHNNDIEIAKALIDRGADINLQNS----------I 71 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------T
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------C
Confidence 45678999999999999999999887 777666554 9999999999999999999999999999998 8
Q ss_pred CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309 88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167 (489)
Q Consensus 88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~ 167 (489)
|.||||+|+..|+.+++++|++.+. ..++..|..|.||||+|+..|+.
T Consensus 72 g~t~l~~A~~~~~~~~~~~Ll~~~~--------------------------------~~~~~~~~~g~t~L~~A~~~~~~ 119 (201)
T 3hra_A 72 SDSPYLYAGAQGRTEILAYMLKHAT--------------------------------PDLNKHNRYGGNALIPAAEKGHI 119 (201)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSC--------------------------------CCTTCCCTTSCCSHHHHHHTTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccC--------------------------------cccccccCCCCcHHHHHHHcCCH
Confidence 9999999999999999999995432 12778888999999999999999
Q ss_pred HHHHHHHhcC-CCcccccccCCCccccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 011309 168 DCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN-----LKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 241 (489)
Q Consensus 168 e~v~~LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~-----~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g 241 (489)
+++++|+++| ++++..+.. |.||||+|+..++ .+++++|+++|++++.+|..|+||||+|+..|
T Consensus 120 ~~v~~Ll~~g~~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 189 (201)
T 3hra_A 120 DNVKLLLEDGREDIDFQNDF----------GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG 189 (201)
T ss_dssp HHHHHHHHHCCCCTTCCCTT----------SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCCcCCCCCC----------CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Confidence 9999999999 999999876 9999999999998 99999999999999999999999999999999
Q ss_pred cHhHHHHhcCCC
Q 011309 242 RHWLEPLLAPSS 253 (489)
Q Consensus 242 ~~~i~~LL~~~~ 253 (489)
+.+++++|.+.+
T Consensus 190 ~~~~~~~Ll~~G 201 (201)
T 3hra_A 190 YTEISKILAQYN 201 (201)
T ss_dssp CHHHHHHHHTCC
T ss_pred CHhHHHHHHhcC
Confidence 999999997653
No 5
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=7e-35 Score=278.24 Aligned_cols=205 Identities=27% Similarity=0.316 Sum_probs=181.7
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
..||||.|+..|+.++|++|++.|++++..+..+ .||||+|+..|+.++|++|+++|++++..+. .|.
T Consensus 11 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~ 78 (237)
T 3b7b_A 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ--RTPLMEAAENNHLEAVKYLIKAGALVDPKDA----------EGS 78 (237)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT----------TSC
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCC--CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC----------CCC
Confidence 4578999999999999999999999988877665 8999999999999999999999999999998 899
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.+. ..++..+..|.||||+|+..|+.++
T Consensus 79 t~L~~A~~~~~~~~~~~Ll~~~~--------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~ 126 (237)
T 3b7b_A 79 TCLHLAAKKGHYEVVQYLLSNGQ--------------------------------MDVNCQDDGGWTPMIWATEYKHVDL 126 (237)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTC--------------------------------CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhCCC--------------------------------CCcccCCCCCCCHHHHHHHcCCHHH
Confidence 99999999999999999997641 1167778899999999999999999
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL 249 (489)
+++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 127 ~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 196 (237)
T 3b7b_A 127 VKLLLSKGSDINIRDNE----------ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196 (237)
T ss_dssp HHHHHHTTCCTTCCCTT----------SCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCCCccCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHH
Confidence 99999999999988876 99999999999999999999999999999999999999999999999988777
Q ss_pred cCC-CCCCCCCCCCCCCcchhhHH
Q 011309 250 APS-SDAVMPRFHPSNYLSLPLLS 272 (489)
Q Consensus 250 ~~~-~~~~~~~~~~~~~~~~pl~~ 272 (489)
.+. ++.+.. +..+.+|++.
T Consensus 197 l~~gad~~~~----d~~g~t~l~~ 216 (237)
T 3b7b_A 197 LSRDSDVTLK----NKEGETPLQC 216 (237)
T ss_dssp HTTTCCTTCC----CTTSCCHHHH
T ss_pred HHcCCCCCcc----CCCCCCHHHH
Confidence 654 444443 4555666543
No 6
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.2e-35 Score=276.70 Aligned_cols=207 Identities=29% Similarity=0.318 Sum_probs=178.4
Q ss_pred CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG 88 (489)
Q Consensus 9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G 88 (489)
.+.++||.|++.|+++.|++|++.++...... +..|.||||+|+..|+.++|++|+++|++++..|. .|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g 73 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD----------AG 73 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----------TS
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCC----------CC
Confidence 35789999999999999999999887643322 23349999999999999999999999999999998 89
Q ss_pred ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309 89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168 (489)
Q Consensus 89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e 168 (489)
+||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|+.+
T Consensus 74 ~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~ 120 (231)
T 3aji_A 74 WSPLHIAASAGXDEIVKALLVKGAH---------------------------------VNAVNQNGCTPLHYAASKNRHE 120 (231)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHcCHHHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHH
Confidence 9999999999999999999987543 6777888999999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHH
Q 011309 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL 248 (489)
Q Consensus 169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~L 248 (489)
++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus 121 ~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 190 (231)
T 3aji_A 121 IAVMLLEGGANPDAKDHY----------DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190 (231)
T ss_dssp HHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCC----------CCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHH
Confidence 999999999999988866 8999999999999999999999999999999999999999999999998877
Q ss_pred hcCC-CCCCCCCCCCCCCcchhhHHH
Q 011309 249 LAPS-SDAVMPRFHPSNYLSLPLLSV 273 (489)
Q Consensus 249 L~~~-~~~~~~~~~~~~~~~~pl~~~ 273 (489)
|.+. ++.+.. +..+.+|+..+
T Consensus 191 Ll~~ga~~~~~----~~~g~t~l~~A 212 (231)
T 3aji_A 191 LVTQGASIYIE----NKEEKTPLQVA 212 (231)
T ss_dssp HHHTTCCSCCC----CTTSCCHHHHS
T ss_pred HHHCCCCCCCC----CCCCCCHHHHH
Confidence 7654 444333 45566775543
No 7
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=5.2e-36 Score=305.44 Aligned_cols=260 Identities=15% Similarity=0.100 Sum_probs=195.9
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT 90 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T 90 (489)
.||||+||..|++++|++||+.|++++..+..+ .||||+|+..|+.++|++|+++|++++.. .|.|
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------------~g~t 86 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFG--CTALHLACKFGCVDTAKYLASVGEVHSLW------------HGQK 86 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHCCHHHHHHHHHHCCCCCCB------------TTBC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC--CcHHHHHHHcCCHHHHHHHHHCCCCcccc------------CCCC
Confidence 589999999999999999999999998877665 99999999999999999999999977653 6899
Q ss_pred HHHHHHHcCCHHHHHHHHHc----cCC--------------------CCCccccccccccccC--Cchhhhhhhhhhhhh
Q 011309 91 ALHFAAVNGHVRCIRLVVAD----FVP--------------------SVPFEVMNTQIEGDRG--DGSSVKSKCDQSALS 144 (489)
Q Consensus 91 pLh~Aa~~g~~~~vk~LL~~----~~~--------------------~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~ 144 (489)
|||+|+..|+.++|++|++. +.. .+..+.++++.+...+ ....+..+... +
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~---g 163 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL---G 163 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH---T
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc---C
Confidence 99999999999999999986 332 2224566777777766 55555554433 4
Q ss_pred hhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCC-----cccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 011309 145 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN-----VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 219 (489)
Q Consensus 145 ~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gad-----vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 219 (489)
..++..|..|.||||+|+..|+.++|++|+++|++ ++..+.. |.||||+|+..|+.++|++||++
T Consensus 164 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~----------g~t~L~~A~~~g~~~~v~~Ll~~ 233 (364)
T 3ljn_A 164 ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ----------GNSHLHWAILINWEDVAMRFVEM 233 (364)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT----------CCCTTHHHHTTTCHHHHHHHHTT
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC----------CCcHHHHHHHcCCHHHHHHHHHc
Confidence 55778888888888888888888888888888888 7777765 88888888888888888888888
Q ss_pred CCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHcCCccccccCCCC-cchhhh
Q 011309 220 GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDD-ADTCAV 298 (489)
Q Consensus 220 Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~G~~~~~~a~~~~-~~~C~i 298 (489)
|+|++.+|.+|+||||+|+..|+.+++++|++.++.......+......+ .....+|+....+...+ .+.+..
T Consensus 234 gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~aa~~~~~~~v~~ 307 (364)
T 3ljn_A 234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV------LPDRVVWLDFVPAAADPSKQEVLQ 307 (364)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSB------CGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccc------cccccccccchhhhhccCHHHHHH
Confidence 88888888888888888888888888877776543311100001111111 12346677666655444 455555
Q ss_pred hhhhc
Q 011309 299 CLERA 303 (489)
Q Consensus 299 Cle~~ 303 (489)
.+.+.
T Consensus 308 ll~~~ 312 (364)
T 3ljn_A 308 LLQEK 312 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=285.17 Aligned_cols=200 Identities=26% Similarity=0.270 Sum_probs=170.2
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT 90 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T 90 (489)
.||||+|+..|+.++|++|++.|++++..+..+ .||||+|+..|+.++|++|+++|++++..|. .|+|
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t 71 (261)
T 2xai_A 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKHGAQVNGVTA----------DWHT 71 (261)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTC--CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TSCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCCC
Confidence 578999999999999999999999988877665 9999999999999999999999999999998 9999
Q ss_pred HHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHH
Q 011309 91 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 170 (489)
Q Consensus 91 pLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v 170 (489)
|||+|+..|+.+++++|++.+.. ++. +..|.||||+|+..|+.+++
T Consensus 72 ~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~-~~~g~t~L~~A~~~~~~~~v 117 (261)
T 2xai_A 72 PLFNACVSGSWDCVNLLLQHGAS---------------------------------VQP-ESDLASPIHEAARRGHVECV 117 (261)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC---------------------------------SSC-SCTTCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCC-CCCCCCHHHHHHHcCcHHHH
Confidence 99999999999999999987643 222 33588999999999999999
Q ss_pred HHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhc
Q 011309 171 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA 250 (489)
Q Consensus 171 ~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~ 250 (489)
++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++. |..|+||||+|+..|+.+++++|.
T Consensus 118 ~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll 186 (261)
T 2xai_A 118 NSLIAYGGNIDHKISH----------LGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLM 186 (261)
T ss_dssp HHHHHTTCCTTCCBTT----------TBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCCCCcCCCC----------CCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHH
Confidence 9999999998888866 88999999999999999999999999885 788899999999999988877765
Q ss_pred C-CCCCCCCCCCCCCCcchhhH
Q 011309 251 P-SSDAVMPRFHPSNYLSLPLL 271 (489)
Q Consensus 251 ~-~~~~~~~~~~~~~~~~~pl~ 271 (489)
+ +++.+.. +..+.+|++
T Consensus 187 ~~gad~~~~----d~~g~tpl~ 204 (261)
T 2xai_A 187 DFGADTQAK----NAEGKRPVE 204 (261)
T ss_dssp HTTCCTTCC----CTTSCCGGG
T ss_pred HcCCCCCCc----CCCCCChhh
Confidence 5 4444433 344455544
No 9
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=9.7e-35 Score=277.34 Aligned_cols=208 Identities=27% Similarity=0.354 Sum_probs=180.9
Q ss_pred chHHHHHHHHcCCHHHHHHHhh----cCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccC
Q 011309 10 SGERLVSAARDGDFVEAKMLLD----CNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADY 85 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~----~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~ 85 (489)
..||||+|++.|++++|++|++ .+.+++..+..+ .||||+|+..|+.+++++|+++|++++..+.
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------- 77 (241)
T 1k1a_A 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR--QTPLHLAVITTLPSVVRLLVTAGASPMALDR--------- 77 (241)
T ss_dssp TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccC--CCHHHHHHHcCCHHHHHHHHHcCCCccccCC---------
Confidence 3578999999999999999997 688887776655 9999999999999999999999999999998
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcC
Q 011309 86 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165 (489)
Q Consensus 86 ~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g 165 (489)
.|.||||+|+..|+.+++++|++.+... ...++..|..|.||||+|+..|
T Consensus 78 -~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-----------------------------~~~~~~~~~~g~t~L~~A~~~~ 127 (241)
T 1k1a_A 78 -HGQTAAHLACEHRSPTCLRALLDSAAPG-----------------------------TLDLEARNYDGLTALHVAVNTE 127 (241)
T ss_dssp -TSCCHHHHHHHTTCHHHHHHHHHHSCTT-----------------------------SCCTTCCCTTSCCHHHHHHHHT
T ss_pred -CCCCHHHHHHHcCCHHHHHHHHHcCCCc-----------------------------cccccccCcCCCcHHHHHHHcC
Confidence 9999999999999999999999875421 1126778889999999999999
Q ss_pred CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhH
Q 011309 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL 245 (489)
Q Consensus 166 ~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i 245 (489)
+.+++++|+++|++++..+.. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus 128 ~~~~~~~Ll~~g~~~~~~~~~---------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 198 (241)
T 1k1a_A 128 CQETVQLLLERGADIDAVDIK---------SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPL 198 (241)
T ss_dssp CHHHHHHHHHTTCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHcCCCccccccc---------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 999999999999999988732 29999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC-CCCCCCCCCCCCCcchhhH
Q 011309 246 EPLLAPS-SDAVMPRFHPSNYLSLPLL 271 (489)
Q Consensus 246 ~~LL~~~-~~~~~~~~~~~~~~~~pl~ 271 (489)
+++|.+. ++++.. +..+.+|+.
T Consensus 199 v~~Ll~~ga~~~~~----~~~g~tpl~ 221 (241)
T 1k1a_A 199 VRTLVRSGADSSLK----NCHNDTPLM 221 (241)
T ss_dssp HHHHHHTTCCTTCC----CTTSCCTTT
T ss_pred HHHHHhcCCCCCCc----CCCCCCHHH
Confidence 8777654 444443 344555544
No 10
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=9.3e-35 Score=293.07 Aligned_cols=230 Identities=25% Similarity=0.211 Sum_probs=182.4
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCC-----------
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ----------- 79 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~----------- 79 (489)
.|+||.||+.|++++|++||++|++++..+..+ |+||||+|+..|+.++|++||++|++++.++..+.
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~-g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 104 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS 104 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTT-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC-CcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence 478999999999999999999999998776543 48999999999999999999999999998887655
Q ss_pred ------------cccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCC-------------ccccccccccccCCchhh
Q 011309 80 ------------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP-------------FEVMNTQIEGDRGDGSSV 134 (489)
Q Consensus 80 ------------i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~-------------~~~~~l~~~~~~~~~~~~ 134 (489)
.....+..|+||||+|+..|+.+++++|++.+...+. .+.++++.+...+....+
T Consensus 105 ~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v 184 (337)
T 4g8k_A 105 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 184 (337)
T ss_dssp HHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHH
T ss_pred chhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHH
Confidence 1223455899999999999999999999987764432 234566666666665555
Q ss_pred hhhhhhhhhhhhhccccCCCccHHHHHHHcCC----HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCH
Q 011309 135 KSKCDQSALSKFVNKAADGGITALHMAALNGY----FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210 (489)
Q Consensus 135 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~----~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ 210 (489)
+.++.. .+..+|.+|..|.|+||.++..+. .+++++|+++|++++.++.. |+||||+|+..|+.
T Consensus 185 ~~LL~~--~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~----------g~t~L~~a~~~~~~ 252 (337)
T 4g8k_A 185 KILLDE--MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER----------GKTPLILAVEKKHL 252 (337)
T ss_dssp HHHHHH--SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGG----------GCCHHHHHHHTTCH
T ss_pred HHHHhc--cCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHhhhh
Confidence 544322 234467777788888887776543 35778888888888877765 88999999999999
Q ss_pred HHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309 211 KCCQVLLSR-GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 253 (489)
Q Consensus 211 eivk~LL~~-Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~ 253 (489)
++|++|++. |++++.+|.+|+||||+|+..|+.+++++|++.+
T Consensus 253 ~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 296 (337)
T 4g8k_A 253 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 296 (337)
T ss_dssp HHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 999998874 8899999999999999999999998887776653
No 11
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.7e-35 Score=276.94 Aligned_cols=206 Identities=26% Similarity=0.317 Sum_probs=177.9
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCC--C-cCCCCCcccccCCC
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN--S-RNYCGQVTRADYLS 87 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n--~-~d~~g~i~~~d~~~ 87 (489)
.||||.|++.|+.++|++|++.+++.....+ ..|.||||+|+..|+.+++++|+++|++++ . .+. .
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------~ 71 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD----------S 71 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT----------T
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC----------C
Confidence 4789999999999999999999988755322 234999999999999999999999995544 4 555 8
Q ss_pred CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309 88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167 (489)
Q Consensus 88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~ 167 (489)
|+||||+|+..|+.+++++|++.+.. ..++..+..|.||||+|+..|+.
T Consensus 72 g~t~L~~A~~~~~~~~~~~Ll~~g~~-------------------------------~~~~~~~~~g~t~L~~A~~~~~~ 120 (228)
T 2dzn_A 72 GWTPFHIACSVGNLEVVKSLYDRPLK-------------------------------PDLNKITNQGVTCLHLAVGKKWF 120 (228)
T ss_dssp SCCHHHHHHHHCCHHHHHHHHSSSSC-------------------------------CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCC-------------------------------cccccCCcCCCCHHHHHHHcCCH
Confidence 99999999999999999999976521 12677888999999999999999
Q ss_pred HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLE 246 (489)
Q Consensus 168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G-advn~~d~~G~TpL~~A~~~g~~~i~ 246 (489)
+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++
T Consensus 121 ~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v 190 (228)
T 2dzn_A 121 EVSQFLIENGASVRIKDKF----------NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 190 (228)
T ss_dssp HHHHHHHHTTCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred hHHHHHHHcCCCccccCCC----------CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHH
Confidence 9999999999999999876 999999999999999999999999 99999999999999999999999998
Q ss_pred HHhc-C-CCCCCCCCCCCCCCcchhhHH
Q 011309 247 PLLA-P-SSDAVMPRFHPSNYLSLPLLS 272 (489)
Q Consensus 247 ~LL~-~-~~~~~~~~~~~~~~~~~pl~~ 272 (489)
++|. + +++.+.. +..+.+|+..
T Consensus 191 ~~Ll~~~ga~~~~~----~~~g~t~l~~ 214 (228)
T 2dzn_A 191 VLLVEKYGAEYDLV----DNKGAKAEDV 214 (228)
T ss_dssp HHHHHHHCCCSCCB----CTTSCBGGGG
T ss_pred HHHHHhcCCCCCcc----CCCCCcHHHH
Confidence 8887 3 6665554 3445566543
No 12
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=8e-35 Score=277.25 Aligned_cols=203 Identities=25% Similarity=0.276 Sum_probs=176.9
Q ss_pred hHHHHHHHHcCCHHHHHHHhhc-CCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCC-----CCcCCCCCccccc
Q 011309 11 GERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV-----NSRNYCGQVTRAD 84 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~-g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~-----n~~d~~g~i~~~d 84 (489)
.||||.|++.|++++|++|++. |.+++..+..+ +||||+|+..|+.++|++|+++|+++ +..|.
T Consensus 4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~-------- 73 (232)
T 2rfa_A 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMG--ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY-------- 73 (232)
T ss_dssp TCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT--------
T ss_pred CCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCC--CCHHHHHHHcCCHHHHHHHHHcCchhccccccccCC--------
Confidence 5789999999999999999998 88888876655 99999999999999999999999987 55565
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHc
Q 011309 85 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164 (489)
Q Consensus 85 ~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~ 164 (489)
.|.||||+|+..|+.+++++|++.+.......... .+....+..|..|.||||+|+..
T Consensus 74 --~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~--------------------~~~~~~~~~~~~g~t~L~~A~~~ 131 (232)
T 2rfa_A 74 --EGQTALHIAVINQNVNLVRALLARGASVSARATGS--------------------VFHYRPHNLIYYGEHPLSFAACV 131 (232)
T ss_dssp --TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG--------------------GGSCCTTCSCCCCSSHHHHHHHH
T ss_pred --CCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc--------------------ceeecccccccCCCCHHHHHHHc
Confidence 89999999999999999999999876543321110 01112556778999999999999
Q ss_pred CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC------CccCCCCCcHH
Q 011309 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC----QVLLSRGASR------MSLNCNGWLPL 234 (489)
Q Consensus 165 g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eiv----k~LL~~Gadv------n~~d~~G~TpL 234 (489)
|+.++|++|+++|++++..|.. |.||||+|+..|+.+++ ++|+++|+++ +.+|..|+|||
T Consensus 132 ~~~~~v~~Ll~~ga~~~~~d~~----------g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl 201 (232)
T 2rfa_A 132 GSEEIVRLLIEHGADIRAQDSL----------GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF 201 (232)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHH
Confidence 9999999999999999999976 99999999999999988 9999999998 58899999999
Q ss_pred HHHHHcCcHhHHHHhcCCCCC
Q 011309 235 DVARMWGRHWLEPLLAPSSDA 255 (489)
Q Consensus 235 ~~A~~~g~~~i~~LL~~~~~~ 255 (489)
|+|+..|+.+++++|++.+..
T Consensus 202 ~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 202 KLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhcCcc
Confidence 999999999999988776543
No 13
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-34 Score=280.65 Aligned_cols=234 Identities=25% Similarity=0.226 Sum_probs=194.1
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT 90 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T 90 (489)
.++||.|++.|++++|++|++.|++++..... .|+||||+|+..|+.++|++|+++|++++..|. .|.|
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t 74 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE-GGWTPLHNAVQMSREDIVELLLRHGADPVLRKK----------NGAT 74 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCCC
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC----------CCCC
Confidence 57899999999999999999999988776333 348999999999999999999999999999887 8999
Q ss_pred HHHHHHHcCCHHHHHHHHHccCCC---CCccccccccccccCCchhhhhhhhhhhhhhhhccc----------cCCCccH
Q 011309 91 ALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA----------ADGGITA 157 (489)
Q Consensus 91 pLh~Aa~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~----------d~~G~Tp 157 (489)
|||+|+..|+.+++++|++.+... +..+.++++.+...+....+..+.... ..++.. +..|.||
T Consensus 75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~~~~~~~~~~~g~t~ 151 (285)
T 1wdy_A 75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG---ANVNLRRKTKEDQERLRKGGATA 151 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT---CCTTCCCCCCHHHHHTTCCCCCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC---CCcccccccHHHHHhhccCCCcH
Confidence 999999999999999999876543 456788888888888777666654432 223333 7789999
Q ss_pred HHHHHHcCCHHHHHHHHhc-CCCcccccccCCCccccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCccCCCCCc
Q 011309 158 LHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN----LKCCQVLLSRGASRMSLNCNGWL 232 (489)
Q Consensus 158 Lh~Aa~~g~~e~v~~LL~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~----~eivk~LL~~Gadvn~~d~~G~T 232 (489)
||+|+..|+.+++++|++. |++++..+.. |.||||+|+..++ .+++++|+++|++++.+|..|+|
T Consensus 152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~----------g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t 221 (285)
T 1wdy_A 152 LMDAAEKGHVEVLKILLDEMGADVNACDNM----------GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT 221 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTSCCCTTCCCTT----------SCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCCCccCCC----------CCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCc
Confidence 9999999999999999987 9999998876 9999999999999 89999999999999999999999
Q ss_pred HHHHHHHcCcHhHHHHhcC--CCCCCCCCCCCCCCcchhhHH
Q 011309 233 PLDVARMWGRHWLEPLLAP--SSDAVMPRFHPSNYLSLPLLS 272 (489)
Q Consensus 233 pL~~A~~~g~~~i~~LL~~--~~~~~~~~~~~~~~~~~pl~~ 272 (489)
|||+|+..|+.+++++|.+ +.+++.. +..+.+|++.
T Consensus 222 ~L~~A~~~~~~~~v~~Ll~~~g~~~~~~----~~~g~t~l~~ 259 (285)
T 1wdy_A 222 PLILAVEKKHLGLVQRLLEQEHIEINDT----DSDGKTALLL 259 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHSSSCCTTCC----CTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhccCCCcccc----CCCCCcHHHH
Confidence 9999999999999888875 4444433 4456677543
No 14
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=9.3e-35 Score=276.31 Aligned_cols=189 Identities=30% Similarity=0.318 Sum_probs=176.6
Q ss_pred CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG 88 (489)
Q Consensus 9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G 88 (489)
...||||+|+..|+.++|++|++.|++++..+..+ +||||+|+..|+.+++++|+++|++++..|. .|
T Consensus 39 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g 106 (231)
T 3aji_A 39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG--WSPLHIAASAGXDEIVKALLVKGAHVNAVNQ----------NG 106 (231)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TS
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCC--CCHHHHHHHcCHHHHHHHHHHcCCCCCCCCC----------CC
Confidence 34579999999999999999999999988776655 9999999999999999999999999999998 89
Q ss_pred ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309 89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168 (489)
Q Consensus 89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e 168 (489)
.||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|+.+
T Consensus 107 ~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 107 CTPLHYAASKNRHEIAVMLLEGGAN---------------------------------PDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHHTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCcHHHHHHHcCCHH
Confidence 9999999999999999999986543 6778889999999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHH
Q 011309 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL 248 (489)
Q Consensus 169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~L 248 (489)
++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++
T Consensus 154 ~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~l 223 (231)
T 3aji_A 154 MVHILLFYKASTNIQDTE----------GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL 223 (231)
T ss_dssp HHHHHHHTTCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCccccCCC----------CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence 999999999999999876 9999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 011309 249 LAPS 252 (489)
Q Consensus 249 L~~~ 252 (489)
|.+.
T Consensus 224 L~~~ 227 (231)
T 3aji_A 224 AEGE 227 (231)
T ss_dssp HHHH
T ss_pred Hccc
Confidence 8653
No 15
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.7e-34 Score=276.98 Aligned_cols=225 Identities=24% Similarity=0.205 Sum_probs=198.5
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
..||||+|+..|+.++|++|++.|++++..+..+ .||||+|+..|+.+++++|+++|++++..|. .|+
T Consensus 39 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~ 106 (285)
T 1wdy_A 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG--ATPFLLAAIAGSVKLLKLFLSKGADVNECDF----------YGF 106 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT----------TCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCccCc----------ccC
Confidence 3579999999999999999999999988876665 8999999999999999999999999999998 999
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCC-------------CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCcc
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSV-------------PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~T 156 (489)
||||+|+..|+.+++++|++.+.... ..+.++++.+...+....+..+... .+..++..|..|.|
T Consensus 107 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~g~t 184 (285)
T 1wdy_A 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE--MGADVNACDNMGRN 184 (285)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT--SCCCTTCCCTTSCC
T ss_pred CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh--cCCCCCccCCCCCC
Confidence 99999999999999999999876553 3355777777777776666655433 13457888999999
Q ss_pred HHHHHHHcCC----HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCC
Q 011309 157 ALHMAALNGY----FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGW 231 (489)
Q Consensus 157 pLh~Aa~~g~----~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~d~~G~ 231 (489)
|||+|+..++ .+++++|+++|++++..+.. |.||||+|+..|+.++|++|++ .|++++.+|..|+
T Consensus 185 ~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~ 254 (285)
T 1wdy_A 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGER----------GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254 (285)
T ss_dssp HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT----------SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSC
T ss_pred HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCC
Confidence 9999999999 99999999999999999876 9999999999999999999999 8999999999999
Q ss_pred cHHHHHHHcCcHhHHHHhcC-CCCCCCC
Q 011309 232 LPLDVARMWGRHWLEPLLAP-SSDAVMP 258 (489)
Q Consensus 232 TpL~~A~~~g~~~i~~LL~~-~~~~~~~ 258 (489)
||||+|+..|+.+++++|.+ +++++..
T Consensus 255 t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~ 282 (285)
T 1wdy_A 255 TALLLAVELKLKKIAELLCKRGASTDCG 282 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred cHHHHHHHcCcHHHHHHHHHcCCCCCcc
Confidence 99999999999999888765 5555443
No 16
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.8e-34 Score=288.48 Aligned_cols=237 Identities=26% Similarity=0.179 Sum_probs=183.8
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
..||||+|+..|++++|++|+++|++++..+..+ +||||+|+..|+.++|++|+++|++++..|. .|.
T Consensus 58 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~----------~g~ 125 (351)
T 3utm_A 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG--LVPLHNACSYGHYEVTELLLKHGACVNAMDL----------WQF 125 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC--CcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----------CCC
Confidence 3578999999999999999999999988776655 8999999999999999999999999999887 899
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCc---cccccccccccCCchhhhhhhhh------------------hhhhhhhc
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPF---EVMNTQIEGDRGDGSSVKSKCDQ------------------SALSKFVN 148 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~in 148 (489)
||||+|+..|+.+++++|++.+...... +.+.++.+............... ........
T Consensus 126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (351)
T 3utm_A 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF 205 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc
Confidence 9999999999999999999877654332 22222222211111111000000 00001123
Q ss_pred cccCCCccHHHHHHHc---CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 011309 149 KAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225 (489)
Q Consensus 149 ~~d~~G~TpLh~Aa~~---g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~ 225 (489)
..+..|.||||+|+.. +..+++++|+++|++++..+.. |.||||+|+..|+.++|++|+++|++++.
T Consensus 206 ~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~ 275 (351)
T 3utm_A 206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD----------FMTPLHVAAERAHNDVMEVLHKHGAKMNA 275 (351)
T ss_dssp CCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred cCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence 4567899999999999 5589999999999999999876 99999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHcCcHhHHHHhcC-CCCCCCCCCCCCCCcchhhHH
Q 011309 226 LNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLS 272 (489)
Q Consensus 226 ~d~~G~TpL~~A~~~g~~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~ 272 (489)
+|..|+||||+|+..|+.+++++|.+ +++++.. +..+.+|+..
T Consensus 276 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~----~~~g~tal~~ 319 (351)
T 3utm_A 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII----SLQGFTAAQM 319 (351)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHH
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc----CCCCCChhhh
Confidence 99999999999999999999887765 4555554 3445555543
No 17
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.9e-34 Score=264.30 Aligned_cols=161 Identities=37% Similarity=0.539 Sum_probs=147.7
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
-+++|+.||+.|++++|++||+.|++++..+..+ +||||+|+..|+.+++++|+++|++++.+|. .|+
T Consensus 4 lg~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g--~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~----------~g~ 71 (169)
T 4gpm_A 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHHAAENGHKEVVKLLISKGADVNAKDS----------DGR 71 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHhcccchhhhcc----------CCC
Confidence 4689999999999999999999999999877666 9999999999999999999999999999998 999
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.++|++|++.+.+ +|.+|..|.||||+|+..|+.++
T Consensus 72 TpLh~A~~~g~~~~v~~Ll~~gad---------------------------------vn~~d~~G~TpLh~A~~~g~~~~ 118 (169)
T 4gpm_A 72 TPLHHAAENGHKEVVKLLISKGAD---------------------------------VNAKDSDGRTPLHHAAENGHKEV 118 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCcCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence 999999999999999999987654 78899999999999999999999
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~ 225 (489)
|++|+++|++++..|.. |+||||+|+..|+.++|++|+++||+++.
T Consensus 119 v~~Ll~~gad~~~~d~~----------G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 119 VKLLISKGADVNTSDSD----------GRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred HHHHHHcCCCccccCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 99999999999999977 99999999999999999999999999864
No 18
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.5e-34 Score=283.35 Aligned_cols=201 Identities=25% Similarity=0.262 Sum_probs=172.2
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
..||||+|+..|+.++|++|++.|++++..+..+ +||||+|+..|+.++|++|+++|++++.+|. .|+
T Consensus 59 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------~g~ 126 (285)
T 3d9h_A 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKHGAQVNGVTA----------DWH 126 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC--CCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT----------TCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC----------CCC
Confidence 3579999999999999999999999998877665 9999999999999999999999999999998 999
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.+.. ++. +..|.||||+|+..|+.++
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~-~~~g~t~L~~A~~~g~~~~ 172 (285)
T 3d9h_A 127 TPLFNACVSGSWDCVNLLLQHGAS---------------------------------VQP-ESDLASPIHEAARRGHVEC 172 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------SSC-SCTTSCHHHHHHHHTCHHH
T ss_pred CHHHHHHHcCHHHHHHHHHHCCCC---------------------------------CCC-CCCCCCHHHHHHHcCCHHH
Confidence 999999999999999999987543 222 2348899999999999999
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL 249 (489)
+++|+++|++++..+.. |.||||+|+..|+.++|++|+++|++++. |..|+||||+|+..|+.+++++|
T Consensus 173 v~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~L 241 (285)
T 3d9h_A 173 VNSLIAYGGNIDHKISH----------LGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLL 241 (285)
T ss_dssp HHHHHHTTCCTTCCBTT----------TBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999888876 88999999999999999999999999984 88899999999999999988777
Q ss_pred cCC-CCCCCCCCCCCCCcchhhH
Q 011309 250 APS-SDAVMPRFHPSNYLSLPLL 271 (489)
Q Consensus 250 ~~~-~~~~~~~~~~~~~~~~pl~ 271 (489)
.+. ++.+.. +..+.+|++
T Consensus 242 l~~gad~~~~----d~~g~t~l~ 260 (285)
T 3d9h_A 242 MDFGADTQAK----NAEGKRPVE 260 (285)
T ss_dssp HHTTCCTTCC----CTTSCCGGG
T ss_pred HHCCCCCCCc----CCCCCCHHH
Confidence 654 444433 334445543
No 19
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.7e-35 Score=286.05 Aligned_cols=204 Identities=25% Similarity=0.294 Sum_probs=134.1
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcc------cCCCCCCchHHHHHHHhCcH-HHHHHHHHcCCCCCCcCCCCCcccc
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAK------YSTFGGLNSPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQVTRA 83 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~------~~~~~~g~TpLh~Aa~~G~~-eivk~LLe~Gad~n~~d~~g~i~~~ 83 (489)
.++|+.||+.|++++|++||+.+++... ...+..+.||||+|+..++. +++++|++.|+++|.+|.
T Consensus 12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~------- 84 (269)
T 4b93_B 12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ------- 84 (269)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT-------
T ss_pred hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC-------
Confidence 4799999999999999999999875321 11223348999999998876 589999999999999998
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH
Q 011309 84 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163 (489)
Q Consensus 84 d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~ 163 (489)
+|+||||+|+..|+.++|++|++.+.. ++..+..|.||||+|+.
T Consensus 85 ---~G~TpLh~A~~~g~~~~v~~Ll~~~a~---------------------------------~~~~~~~g~t~l~~a~~ 128 (269)
T 4b93_B 85 ---DGSSPLHVAALHGRADLIPLLLKHGAN---------------------------------AGARNADQAVPLHLACQ 128 (269)
T ss_dssp ---TSCCHHHHHHHTTCTTHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHH
T ss_pred ---CCCCHHHHHHHcCcHHHHHHHHhcCCC---------------------------------cCccCCCCCCccccccc
Confidence 999999999999999999999987644 55666677777777777
Q ss_pred cCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcH
Q 011309 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243 (489)
Q Consensus 164 ~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~ 243 (489)
.++.+++++|+++|++++..|.. |.||||+|+..|+.++|++||++|+|+|.+|..|+||||+|+..|+.
T Consensus 129 ~~~~~~~~~Ll~~g~~~n~~d~~----------g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~ 198 (269)
T 4b93_B 129 QGHFQVVKCLLDSNAKPNKKDLS----------GNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198 (269)
T ss_dssp HTCHHHHHHHHHTTCCSCCCCTT----------CCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred cChHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCH
Confidence 77777777777777777777655 77777777777777777777777777777777777777777777777
Q ss_pred hHHHHhcC-CCCCCCCCCCCCCCcchhhH
Q 011309 244 WLEPLLAP-SSDAVMPRFHPSNYLSLPLL 271 (489)
Q Consensus 244 ~i~~LL~~-~~~~~~~~~~~~~~~~~pl~ 271 (489)
+++++|+. +++++.. +..+.+|++
T Consensus 199 ~~v~~Ll~~Gad~~~~----d~~G~TpL~ 223 (269)
T 4b93_B 199 FVVELLLLHGASVQVL----NKRQRTAVD 223 (269)
T ss_dssp HHHHHHHHTTCCSCCC----CTTSCCSGG
T ss_pred HHHHHHHHCCCCCCCc----CCCCCCHHH
Confidence 77666644 3444433 334445543
No 20
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-34 Score=286.34 Aligned_cols=223 Identities=25% Similarity=0.307 Sum_probs=181.6
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
.+++||.|+..|++++|++||+.|++++..+..+ .||||+|+..|+.++|++|+++|++++..|. .|+
T Consensus 40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------~g~ 107 (299)
T 1s70_B 40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDG--LTALHQACIDDNVDMVKFLVENGANINQPDN----------EGW 107 (299)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTC--CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSC
T ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCC
Confidence 3689999999999999999999999988877665 8999999999999999999999999999998 899
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCC---CccccccccccccCCchhhhhhhhhhhhh----------------------
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSKCDQSALS---------------------- 144 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------------------- 144 (489)
||||+|+..|+.++|++|++.+.... ..+.++++.+...+....+..+.......
T Consensus 108 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (299)
T 1s70_B 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS 187 (299)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhc
Confidence 99999999999999999999876433 34556666665544433333222111000
Q ss_pred --hhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309 145 --KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222 (489)
Q Consensus 145 --~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 222 (489)
......+..|.||||+|+..|+.++|++|+++|++++..|.. |.||||+|+..|+.++|++|+++|+|
T Consensus 188 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~gad 257 (299)
T 1s70_B 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVENLCD 257 (299)
T ss_dssp TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHhcCCHHHHHHHHHcCCC
Confidence 011234567999999999999999999999999999998866 99999999999999999999999999
Q ss_pred CCccCCCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309 223 RMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 254 (489)
Q Consensus 223 vn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~ 254 (489)
++.+|..|+||||+|.......+..++.+...
T Consensus 258 ~~~~d~~g~t~l~~A~~~~~~~l~~l~~~~~~ 289 (299)
T 1s70_B 258 MEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289 (299)
T ss_dssp TTCCCTTSCCTTTSCCSGGGHHHHHHHHHTTS
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999987666666666655443
No 21
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=9.2e-34 Score=284.71 Aligned_cols=209 Identities=27% Similarity=0.276 Sum_probs=179.0
Q ss_pred hHHHHHHHHcCCHHHHHHHhhc-CCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 11 GERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~-g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
.++||.||+.|+.+.|+.|+.. +.+++..+..+ +||||+|+..|+.++|++|+++|++++..|. .|+
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~ 92 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRK--STPLHLAAGYNRVRIVQLLLQHGADVHAKDK----------GGL 92 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCC
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----------CCC
Confidence 5789999999999999999986 66666665554 9999999999999999999999999999998 999
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|+.++
T Consensus 93 t~L~~A~~~g~~~iv~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~ 139 (351)
T 3utm_A 93 VPLHNACSYGHYEVTELLLKHGAC---------------------------------VNAMDLWQFTPLHEAASKNRVEV 139 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred cHHHHHHHCCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence 999999999999999999987543 67788899999999999999999
Q ss_pred HHHHHhcCCCcccccccC------------------------------------------------CCccccCCCCCcHH
Q 011309 170 VQLLLDLHANVSAVTFHY------------------------------------------------GTSMDLIGAGSTPL 201 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~------------------------------------------------~~~~~~~~~G~TpL 201 (489)
+++|+++|++++..+..+ ... ..|.|||
T Consensus 140 v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~t~L 215 (351)
T 3utm_A 140 CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP----QSHETAL 215 (351)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCT----TTCCCHH
T ss_pred HHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCC----CCCCCHH
Confidence 999999999987643110 000 1389999
Q ss_pred HHHHHc---CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHH
Q 011309 202 HFAACG---GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLS 272 (489)
Q Consensus 202 h~Aa~~---g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~ 272 (489)
|+|+.. +..+++++|+++|++++.+|.+|+||||+|+..|+.+++++|.+. ++++.. +..+.+|++.
T Consensus 216 ~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~----d~~g~t~L~~ 286 (351)
T 3utm_A 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL----DSLGQTALHR 286 (351)
T ss_dssp HHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHH
Confidence 999999 568999999999999999999999999999999999998887654 454444 4556677654
No 22
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.2e-35 Score=284.21 Aligned_cols=199 Identities=24% Similarity=0.333 Sum_probs=175.7
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCC----CCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNP----CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADY 85 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~----~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~ 85 (489)
..||||+|+..|+.++|++|++.+. +++..+..+ +||||+|+..|+.++|++|+++|++++.+|.
T Consensus 8 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------- 76 (236)
T 1ikn_D 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ--QTPLHLAVITNQPEIAEALLGAGCDPELRDF--------- 76 (236)
T ss_dssp CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTC--CCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT---------
T ss_pred CCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---------
Confidence 3467999999999999999999876 455555544 9999999999999999999999999999998
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcC
Q 011309 86 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165 (489)
Q Consensus 86 ~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g 165 (489)
.|+||||+|+..|+.+++++|++.+.... ....++..+..|.||||+|+..|
T Consensus 77 -~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------------------------~~~~~~~~~~~g~t~L~~A~~~~ 128 (236)
T 1ikn_D 77 -RGNTPLHLACEQGCLASVGVLTQSCTTPH---------------------------LHSILKATNYNGHTCLHLASIHG 128 (236)
T ss_dssp -TCCCHHHHHHHHTCHHHHHHHHHSTTTTS---------------------------SSCGGGCCCTTCCCHHHHHHHTT
T ss_pred -CCCCHHHHHHHcCCHHHHHHHHhcccchh---------------------------HHHHhhccCCCCCCHHHHHHHcC
Confidence 99999999999999999999998754311 11236778889999999999999
Q ss_pred CHHHHHHHHhcCCCcccccc-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHh
Q 011309 166 YFDCVQLLLDLHANVSAVTF-HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 244 (489)
Q Consensus 166 ~~e~v~~LL~~Gadvn~~~~-~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~ 244 (489)
+.++|++|+++|++++..+. . |.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 129 ~~~~v~~Ll~~g~~~~~~~~~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~ 198 (236)
T 1ikn_D 129 YLGIVELLVSLGADVNAQEPCN----------GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR 198 (236)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTT----------CCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchH
Confidence 99999999999999999886 4 999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCC
Q 011309 245 LEPLLAPSSDAVM 257 (489)
Q Consensus 245 i~~LL~~~~~~~~ 257 (489)
++++|.+.+....
T Consensus 199 ~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 199 IQQQLGQLTLENL 211 (236)
T ss_dssp HHHHHHTTSCGGG
T ss_pred HHHHHHHcchhhh
Confidence 9999988766544
No 23
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-34 Score=296.98 Aligned_cols=220 Identities=22% Similarity=0.216 Sum_probs=162.8
Q ss_pred CchHHHHHHHHcCCHHHHHHHh--------hcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCc
Q 011309 9 ASGERLVSAARDGDFVEAKMLL--------DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQV 80 (489)
Q Consensus 9 ~s~t~L~~Aa~~G~~~~Vk~LL--------~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i 80 (489)
...||||+|+..|+.++|++|+ +.|++++..+..+ +||||+|+..|+.++|++|+++|++++..|.
T Consensus 124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g--~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~---- 197 (373)
T 2fo1_E 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE--NTPLMLAVLARRRRLVAYLMKAGADPTIYNK---- 197 (373)
T ss_dssp SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCC--CCHHHHHHHcChHHHHHHHHHCCCCCcccCC----
Confidence 3458999999999998888776 7899988877655 8999999999999999999999999999998
Q ss_pred ccccCCCCChHHHHHHHcCCHHHHHHHHHcc------CCCCCccccccccccccCC---chhhhhhhhhhhhhhhhc---
Q 011309 81 TRADYLSGRTALHFAAVNGHVRCIRLVVADF------VPSVPFEVMNTQIEGDRGD---GSSVKSKCDQSALSKFVN--- 148 (489)
Q Consensus 81 ~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~------~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~in--- 148 (489)
.|.||||+|+..|+.+++++|++.+ ...+..+.++++.+...+. ...+..+... +..++
T Consensus 198 ------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~---g~~~~~~~ 268 (373)
T 2fo1_E 198 ------SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK---GAKVDYDG 268 (373)
T ss_dssp ------TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH---TCCSSCCS
T ss_pred ------CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC---CCCccccc
Confidence 8999999999999999999999653 2334455566666555442 2222222211 22222
Q ss_pred -----cccCCCccHHHHHHHcCCHHHHHHHHhcC-CCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309 149 -----KAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222 (489)
Q Consensus 149 -----~~d~~G~TpLh~Aa~~g~~e~v~~LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 222 (489)
..|..|.||||+|+..|+.++|++|+++| ++++..+.. |.||||+|+..|+.++|++|+++|++
T Consensus 269 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~----------g~TpL~~A~~~g~~~iv~~Ll~~gad 338 (373)
T 2fo1_E 269 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED----------GKTPIMLAAQEGRIEVVMYLIQQGAS 338 (373)
T ss_dssp GGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred ccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 24556777777777777777777777665 777776655 77777777777777777777777777
Q ss_pred CCccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309 223 RMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 253 (489)
Q Consensus 223 vn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~ 253 (489)
++.+|..|+||||+|+..|+.+++++|.+..
T Consensus 339 ~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 339 VEAVDATDHTARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 7777777777777777777777777776554
No 24
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-33 Score=293.76 Aligned_cols=227 Identities=28% Similarity=0.290 Sum_probs=133.0
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
..||||+|+..|+.++|++|++.+.+.+..+..+ .||||+|+..|+.+++++|+++|++++..+. .|.
T Consensus 113 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~ 180 (437)
T 1n11_A 113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKG--FTPLHVAAKYGKVRVAELLLERDAHPNAAGK----------NGL 180 (437)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS----------SCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCC--CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC----------CCC
Confidence 3467888888888888888888877766655544 7888888888888888888888888887776 566
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCC---CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~ 166 (489)
||||+|+..|+.+++++|++.+.... ..+.++++.+...+....+..+... +..++..+..|.||||+|+..|+
T Consensus 181 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~ 257 (437)
T 1n11_A 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY---GGSANAESVQGVTPLHLAAQEGH 257 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHCCC
Confidence 66666666666666666665544322 2334455555554444444333221 12234444445555555555555
Q ss_pred HHHHHHHHhcCCCcccccccCCCcccc-----------------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 011309 167 FDCVQLLLDLHANVSAVTFHYGTSMDL-----------------------IGAGSTPLHFAACGGNLKCCQVLLSRGASR 223 (489)
Q Consensus 167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~-----------------------~~~G~TpLh~Aa~~g~~eivk~LL~~Gadv 223 (489)
.++|++|+++|++++..+..+.+++.. ...|.||||+|+..|+.++|++|+++|+++
T Consensus 258 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~ 337 (437)
T 1n11_A 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV 337 (437)
T ss_dssp HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence 555555555555544444331110000 011666666666666666666666666666
Q ss_pred CccCCCCCcHHHHHHHcCcHhHHHHhcC
Q 011309 224 MSLNCNGWLPLDVARMWGRHWLEPLLAP 251 (489)
Q Consensus 224 n~~d~~G~TpL~~A~~~g~~~i~~LL~~ 251 (489)
+.+|..|+||||+|+..|+.+++++|++
T Consensus 338 n~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence 6666666666666666666665555544
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.4e-34 Score=273.57 Aligned_cols=189 Identities=27% Similarity=0.296 Sum_probs=172.0
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCC----CCCCcCCCCCcccccC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA----DVNSRNYCGQVTRADY 85 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Ga----d~n~~d~~g~i~~~d~ 85 (489)
..||||+|+..|+.++|++|++.|++++..+..+ .||||+|+..|+.+++++|+++|+ +++..+.
T Consensus 46 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g--~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~--------- 114 (241)
T 1k1a_A 46 RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG--QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY--------- 114 (241)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT---------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc---------
Confidence 4579999999999999999999999988876655 899999999999999999999987 8888887
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHHHHc
Q 011309 86 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALN 164 (489)
Q Consensus 86 ~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~ 164 (489)
.|.||||+|+..|+.+++++|++.+.. ++..+ ..|.||||+|+..
T Consensus 115 -~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 115 -DGLTALHVAVNTECQETVQLLLERGAD---------------------------------IDAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp -TSCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTTCCCHHHHHHHT
T ss_pred -CCCcHHHHHHHcCCHHHHHHHHHcCCC---------------------------------cccccccCCCcHHHHHHHc
Confidence 899999999999999999999987543 56666 7899999999999
Q ss_pred CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHh
Q 011309 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 244 (489)
Q Consensus 165 g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~ 244 (489)
|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 161 ~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~ 230 (241)
T 1k1a_A 161 NSLSMVQLLLQHGANVNAQMYS----------GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID 230 (241)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTT----------SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHH
Confidence 9999999999999999999876 999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCC
Q 011309 245 LEPLLAPSS 253 (489)
Q Consensus 245 i~~LL~~~~ 253 (489)
++++|...+
T Consensus 231 i~~~l~~~~ 239 (241)
T 1k1a_A 231 ILRGKATRP 239 (241)
T ss_dssp HHTC-----
T ss_pred HHhhhccCC
Confidence 999887654
No 26
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.3e-33 Score=258.73 Aligned_cols=155 Identities=39% Similarity=0.534 Sum_probs=146.5
Q ss_pred hHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccccc
Q 011309 47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG 126 (489)
Q Consensus 47 TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~ 126 (489)
++|+.||+.|+.++|++||++|+|+|.+|. .|+||||+|+..++.+++++|++.+.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~----------~g~t~l~~a~~~~~~~~~~~ll~~gad------------- 62 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDS----------DGRTPLHHAAENGHKEVVKLLISKGAD------------- 62 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----------CCCCHHHHHHHcCCHHHHHHHHhcccc-------------
Confidence 689999999999999999999999999998 999999999999999999999987654
Q ss_pred ccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHH
Q 011309 127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206 (489)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~ 206 (489)
++.+|..|.||||+|+..|+.++|++|+++|++++.+|.. |+||||+|+.
T Consensus 63 --------------------~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~----------G~TpLh~A~~ 112 (169)
T 4gpm_A 63 --------------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD----------GRTPLHHAAE 112 (169)
T ss_dssp --------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHH
T ss_pred --------------------hhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC----------CCCHHHHHHH
Confidence 7888999999999999999999999999999999999976 9999999999
Q ss_pred cCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 254 (489)
Q Consensus 207 ~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~ 254 (489)
.|+.++|++|+++|+|++.+|.+|+||||+|+.+|+.+++++|.+.+.
T Consensus 113 ~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA 160 (169)
T 4gpm_A 113 NGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160 (169)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred cCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999988877554
No 27
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=283.75 Aligned_cols=182 Identities=28% Similarity=0.341 Sum_probs=150.3
Q ss_pred hHHHHHHHHcCCHH-HHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 11 GERLVSAARDGDFV-EAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~-~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
.+||+.|+..++.+ ++++|++.|++++..+.+| +||||+|+..|+.++|++||+.|++++..+. .|.
T Consensus 53 ~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G--~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~----------~g~ 120 (269)
T 4b93_B 53 CHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG--SSPLHVAALHGRADLIPLLLKHGANAGARNA----------DQA 120 (269)
T ss_dssp ----------------------CCCCTTCCCTTS--CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCT----------TCC
T ss_pred CCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHcCcHHHHHHHHhcCCCcCccCC----------CCC
Confidence 47899999988865 7899999999998877665 9999999999999999999999999999998 999
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..++.+++++|++.+.. +|.+|..|.||||+|+..|+.++
T Consensus 121 t~l~~a~~~~~~~~~~~Ll~~g~~---------------------------------~n~~d~~g~TpL~~A~~~g~~~~ 167 (269)
T 4b93_B 121 VPLHLACQQGHFQVVKCLLDSNAK---------------------------------PNKKDLSGNTPLIYACSGGHHEL 167 (269)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------SCCCCTTCCCHHHHHHHTTCGGG
T ss_pred CccccccccChHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHCCCHHH
Confidence 999999999999999999987544 78889999999999999999999
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL 249 (489)
|++|+++|++++..+.. |.||||+|+..|+.++|++||++|+|++.+|.+|+||||+|+++++ ++++|
T Consensus 168 v~~Ll~~gadvn~~~~~----------g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~--i~~lL 235 (269)
T 4b93_B 168 VALLLQHGASINASNNK----------GNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--IMELL 235 (269)
T ss_dssp HHHHHHTTCCTTCBCTT----------SCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred HHHHHHCCCCCCccccC----------CCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence 99999999999999876 9999999999999999999999999999999999999999988775 45555
No 28
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.6e-34 Score=278.30 Aligned_cols=212 Identities=22% Similarity=0.200 Sum_probs=171.4
Q ss_pred chHHHHHHHHcCCHH----HHHHHhhcCCCCcc----cCCCCCCchHHHHHHHh---CcHHHHHHHHHcCCCCCCcCCCC
Q 011309 10 SGERLVSAARDGDFV----EAKMLLDCNPCLAK----YSTFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCG 78 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~----~Vk~LL~~g~~l~~----~~~~~~g~TpLh~Aa~~---G~~eivk~LLe~Gad~n~~d~~g 78 (489)
..||||.|++.|+.+ ++++|++.|.+++. .+..+ +||||+|+.. |+.++|++|+++|++++..+..-
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g--~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTG--KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTT--BCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCC--CCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 358999999999997 66777779999887 55544 9999999999 99999999999999887443100
Q ss_pred C-cccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccH
Q 011309 79 Q-VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITA 157 (489)
Q Consensus 79 ~-i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~Tp 157 (489)
. .....+..|.||||+|+..|+.+++++|++.+...+....... +....+..|..|.||
T Consensus 80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~--------------------~~~~~~~~~~~g~tp 139 (256)
T 2etb_A 80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF--------------------FQKHQGTCFYFGELP 139 (256)
T ss_dssp GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG--------------------GSCCSSSCCCSCSSH
T ss_pred ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccc--------------------ccccccccccCCCCH
Confidence 0 0000112799999999999999999999998765322211100 001123334459999
Q ss_pred HHHHHHcCCHHHHHHHHh---cCCCcccccccCCCccccCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC--
Q 011309 158 LHMAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAAC--GGNLK-------CCQVLLSRGASR-- 223 (489)
Q Consensus 158 Lh~Aa~~g~~e~v~~LL~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~--~g~~e-------ivk~LL~~Gadv-- 223 (489)
||+|+..|+.++|++|++ +|++++..|.. |+||||+|+. .++.+ ++++|+++|+++
T Consensus 140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~----------g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~ 209 (256)
T 2etb_A 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSL----------GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP 209 (256)
T ss_dssp HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHcCCHHHHHHHHhccccCCCcCccCCC----------CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccc
Confidence 999999999999999999 99999999976 9999999999 88888 999999999999
Q ss_pred -----CccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309 224 -----MSLNCNGWLPLDVARMWGRHWLEPLLAPSS 253 (489)
Q Consensus 224 -----n~~d~~G~TpL~~A~~~g~~~i~~LL~~~~ 253 (489)
+.+|..|+||||+|+..|+.+++++|++++
T Consensus 210 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 999999999999999999999999987654
No 29
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1e-32 Score=287.67 Aligned_cols=227 Identities=27% Similarity=0.304 Sum_probs=158.6
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT 90 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T 90 (489)
.||||+|+..|++++|++|+++|++++..+..+ .||||+|+..|+.++|++|+++|+++|.++. .|+|
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t 82 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAKVNAKAK----------DDQT 82 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCC--CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT----------TSCC
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC----------CCCC
Confidence 478999999999999999999998887766555 8999999999999999999999999998887 7888
Q ss_pred HHHHHHHcCCHHHHHHHHHccCCC---CCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309 91 ALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167 (489)
Q Consensus 91 pLh~Aa~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~ 167 (489)
|||+|+..|+.++|++|++.+... +..+.++++.+...+....+..+.... ..++..+..|.||||+|+..|+.
T Consensus 83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~g~t~L~~A~~~g~~ 159 (437)
T 1n11_A 83 PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE---ASQACMTKKGFTPLHVAAKYGKV 159 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCSCCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC---CCCcCCCCCCCCHHHHHHHcCCH
Confidence 888888888888888888776543 334566677776666665555444321 22344455555666666666666
Q ss_pred HHHHHHHhcCCCcccccccCCCccccC-----------------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 011309 168 DCVQLLLDLHANVSAVTFHYGTSMDLI-----------------------GAGSTPLHFAACGGNLKCCQVLLSRGASRM 224 (489)
Q Consensus 168 e~v~~LL~~Gadvn~~~~~~~~~~~~~-----------------------~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn 224 (489)
+++++|+++|++++..+..+.+++... ..|.||||+|+..|+.+++++|+++|++++
T Consensus 160 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 239 (437)
T 1n11_A 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239 (437)
T ss_dssp HHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 666666666555555554422222100 136777777777777777777777777777
Q ss_pred ccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309 225 SLNCNGWLPLDVARMWGRHWLEPLLAPS 252 (489)
Q Consensus 225 ~~d~~G~TpL~~A~~~g~~~i~~LL~~~ 252 (489)
..+..|+||||+|+..|+.+++++|...
T Consensus 240 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 267 (437)
T 1n11_A 240 AESVQGVTPLHLAAQEGHAEMVALLLSK 267 (437)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence 7777777777777777777776666543
No 30
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.6e-33 Score=266.35 Aligned_cols=182 Identities=31% Similarity=0.474 Sum_probs=170.1
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcC-CCCCCcCCCCCcccccCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENG-ADVNSRNYCGQVTRADYLSG 88 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~G-ad~n~~d~~g~i~~~d~~~G 88 (489)
..+|||.|+..|+.++|++|++.|++++..+..+ .||||+|+..|+.+++++|+++| ++++..+. .|
T Consensus 44 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~----------~g 111 (237)
T 3b7b_A 44 QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG--STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD----------GG 111 (237)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTS--CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT----------TS
T ss_pred CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC--CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC----------CC
Confidence 3579999999999999999999999988776655 89999999999999999999998 89999987 89
Q ss_pred ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309 89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168 (489)
Q Consensus 89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e 168 (489)
.||||+|+..|+.+++++|++.+.. ++.++..|.||||+|+..|+.+
T Consensus 112 ~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~ 158 (237)
T 3b7b_A 112 WTPMIWATEYKHVDLVKLLLSKGSD---------------------------------INIRDNEENICLHWAAFSGCVD 158 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHHCCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCccCCCCCCHHHHHHHCCCHH
Confidence 9999999999999999999987543 6778889999999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE 246 (489)
Q Consensus 169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~ 246 (489)
++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+..++.+.+
T Consensus 159 ~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~ 226 (237)
T 3b7b_A 159 IAEILLAAKCDLHAVNIH----------GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSA 226 (237)
T ss_dssp HHHHHHTTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred HHHHHHHcCCCCCCcCCC----------CCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999876 99999999999999999999999999999999999999999999998543
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=5.9e-34 Score=281.86 Aligned_cols=191 Identities=19% Similarity=0.140 Sum_probs=172.6
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
..||||+|+..|+.++|++|++.|++++..+ |+||||+|+..|+.++|++|+++|++++..|. .|+
T Consensus 31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~----------~g~ 96 (285)
T 3kea_A 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLE----NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD----------KGN 96 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT----TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCT----------TSC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC----CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----------CCC
Confidence 4579999999999999999999999887762 48999999999999999999999999999998 999
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCC-ccHHHHHHHcCCHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG-ITALHMAALNGYFD 168 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G-~TpLh~Aa~~g~~e 168 (489)
||||+|+..|+.+++++|++.+.. ++..+..| .||||+|+..|+.+
T Consensus 97 t~L~~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~~~~g~~t~L~~A~~~~~~~ 143 (285)
T 3kea_A 97 TALYYAVDSGNMQTVKLFVKKNWR---------------------------------LMFYGKTGWKTSFYHAVMLNDVS 143 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGG---------------------------------GGGCSSSGGGSHHHHHHHTTCHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCC---------------------------------CCccCCCCCCCHHHHHHHcCCHH
Confidence 999999999999999999976432 77888889 89999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH-HHHHHHcCcHhHHH
Q 011309 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP-LDVARMWGRHWLEP 247 (489)
Q Consensus 169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~Tp-L~~A~~~g~~~i~~ 247 (489)
++++|+++|+++.... . |.||||+|+..|+.++|++|+++|++++.+|..|+|| ||+|+..|+.++++
T Consensus 144 ~v~~Ll~~g~~~~~~~-~----------g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~ 212 (285)
T 3kea_A 144 IVSYFLSEIPSTFDLA-I----------LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212 (285)
T ss_dssp HHHHHHTTSCTTCCCS-T----------HHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCCcccccc-C----------CccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence 9999999998874432 2 8999999999999999999999999999999999998 99999999999998
Q ss_pred HhcCC-CCCCCC
Q 011309 248 LLAPS-SDAVMP 258 (489)
Q Consensus 248 LL~~~-~~~~~~ 258 (489)
+|.+. ++++..
T Consensus 213 ~Ll~~gad~~~~ 224 (285)
T 3kea_A 213 ALFKYDINIYSA 224 (285)
T ss_dssp HHTTSCBCSTTT
T ss_pred HHHHcCCCCCCC
Confidence 88765 444443
No 32
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=273.47 Aligned_cols=185 Identities=25% Similarity=0.281 Sum_probs=167.9
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
..||||+|+..|+.++|++|++.|++++..+..+ +||||+|+..|+.++|++|+++|++++..+ .|.
T Consensus 36 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------~g~ 102 (261)
T 2xai_A 36 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW--HTPLFNACVSGSWDCVNLLLQHGASVQPES-----------DLA 102 (261)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-----------TTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-----------CCC
Confidence 4579999999999999999999999998877665 899999999999999999999999998654 699
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|+.++
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~ 149 (261)
T 2xai_A 103 SPIHEAARRGHVECVNSLIAYGGN---------------------------------IDHKISHLGTPLYLACENQQRAC 149 (261)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCBTTTBCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCC---------------------------------CCcCCCCCCCHHHHHHHhCCHHH
Confidence 999999999999999999987543 77889999999999999999999
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL 249 (489)
+++|+++|++++. +.. |.||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+..+ +++++|
T Consensus 150 v~~Ll~~g~~~~~-~~~----------g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~l 216 (261)
T 2xai_A 150 VKKLLESGADVNQ-GKG----------QDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLF 216 (261)
T ss_dssp HHHHHHHTCCTTC-CBT----------TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHH
T ss_pred HHHHHHcCCCCCC-CCC----------CCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHH
Confidence 9999999999995 444 999999999999999999999999999999999999999999654 477777
Q ss_pred cCCC
Q 011309 250 APSS 253 (489)
Q Consensus 250 ~~~~ 253 (489)
....
T Consensus 217 l~~~ 220 (261)
T 2xai_A 217 LERE 220 (261)
T ss_dssp HHC-
T ss_pred Hhcc
Confidence 6653
No 33
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.5e-33 Score=263.25 Aligned_cols=186 Identities=22% Similarity=0.176 Sum_probs=166.9
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccC-CCCCCchHHHHHHHhCcHHHHHHHHHcC--CCCCCcCCCCCcccccCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYS-TFGGLNSPLHFAAAKGHNEIVALLLENG--ADVNSRNYCGQVTRADYL 86 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~-~~~~g~TpLh~Aa~~G~~eivk~LLe~G--ad~n~~d~~g~i~~~d~~ 86 (489)
..||||+|+..|+.++|++|++.|++.+... .+..|+||||+|+..|+.+++++|+++| ++++..+.
T Consensus 36 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~---------- 105 (228)
T 2dzn_A 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN---------- 105 (228)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT----------
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc----------
Confidence 4579999999999999999999995554433 3344599999999999999999999999 88998887
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309 87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166 (489)
Q Consensus 87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~ 166 (489)
.|.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+
T Consensus 106 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~ 152 (228)
T 2dzn_A 106 QGVTCLHLAVGKKWFEVSQFLIENGAS---------------------------------VRIKDKFNQIPLHRAASVGS 152 (228)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------SCCCCTTSCCHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHhHHHHHHHcCCC---------------------------------ccccCCCCCCHHHHHHHcCC
Confidence 899999999999999999999987544 77888999999999999999
Q ss_pred HHHHHHHHhcC-CCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHcCcHh
Q 011309 167 FDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL-SRGASRMSLNCNGWLPLDVARMWGRHW 244 (489)
Q Consensus 167 ~e~v~~LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL-~~Gadvn~~d~~G~TpL~~A~~~g~~~ 244 (489)
.+++++|+++| ++++..+.. |+||||+|+..|+.+++++|+ ++|+|++.+|.+|+|||++|+.. +
T Consensus 153 ~~~v~~Ll~~g~~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~ 219 (228)
T 2dzn_A 153 LKLIELLCGLGKSAVNWQDKQ----------GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---Q 219 (228)
T ss_dssp HHHHHHHHTTTCCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---T
T ss_pred HHHHHHHHhcCcccccCcCCC----------CCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---H
Confidence 99999999999 999998876 999999999999999999999 89999999999999999999754 4
Q ss_pred HHHHhcC
Q 011309 245 LEPLLAP 251 (489)
Q Consensus 245 i~~LL~~ 251 (489)
++++|.+
T Consensus 220 ~~~~l~~ 226 (228)
T 2dzn_A 220 VKKFFLN 226 (228)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 5555544
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.6e-33 Score=263.46 Aligned_cols=222 Identities=23% Similarity=0.242 Sum_probs=175.0
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
+.++|+.|++.|++++|++|++.|.+++..+..+ .||||+|+..|+.++|++|+++|++++..+. ..|.
T Consensus 9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~---------~~~~ 77 (240)
T 3eu9_A 9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKEN--VTLLHWAAINNRIDLVKYYISKGAIVDQLGG---------DLNS 77 (240)
T ss_dssp GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT---------TTTB
T ss_pred cchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCC--CCHHHHHHHhCCHHHHHHHHHcCCcchhhcC---------CcCC
Confidence 4567999999999999999999999988776655 8999999999999999999999999886664 2599
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCC---CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~ 166 (489)
||||+|+..|+.+++++|++.+.... ..+.++++.+...+....+..+... +..++..+..|.||||+|+..++
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~g~t~l~~a~~~~~ 154 (240)
T 3eu9_A 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK---GQDVDMMDQNGMTPLMWAAYRTH 154 (240)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHCC
T ss_pred ChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc---CCCccccCCCCCcHHHHHHHhCC
Confidence 99999999999999999998765433 3445666666666665555544332 33466777778888888886655
Q ss_pred -HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhH
Q 011309 167 -FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL 245 (489)
Q Consensus 167 -~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i 245 (489)
.+++++|++.|++++..+.. .|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.++
T Consensus 155 ~~~~~~~L~~~~~~~~~~~~~---------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 225 (240)
T 3eu9_A 155 SVDPTRLLLTFNVSVNLGDKY---------HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWM 225 (240)
T ss_dssp SSTTHHHHHHTTCCTTCCCTT---------TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred hHHHHHHHHhcCCCcchhhcc---------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 67788888888887777652 27788888888888888888888888888888888888888888888888
Q ss_pred HHHhcCCCC
Q 011309 246 EPLLAPSSD 254 (489)
Q Consensus 246 ~~LL~~~~~ 254 (489)
+++|.+...
T Consensus 226 v~~L~~~~~ 234 (240)
T 3eu9_A 226 INHLQEARQ 234 (240)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhh
Confidence 877765443
No 35
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=275.86 Aligned_cols=189 Identities=25% Similarity=0.287 Sum_probs=169.2
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
..||||+|+..|+.++|++|++.|++++..+..+ .||||+|+..|+.++|++|+++|++++..+ .|.
T Consensus 92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------~g~ 158 (285)
T 3d9h_A 92 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW--HTPLFNACVSGSWDCVNLLLQHGASVQPES-----------DLA 158 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTC--CCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-----------TTS
T ss_pred CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-----------CCC
Confidence 4589999999999999999999999998877666 899999999999999999999999998755 699
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|+.++
T Consensus 159 t~L~~A~~~g~~~~v~~Ll~~g~~---------------------------------~~~~d~~g~t~L~~A~~~~~~~~ 205 (285)
T 3d9h_A 159 SPIHEAARRGHVECVNSLIAYGGN---------------------------------IDHKISHLGTPLYLACENQQRAC 205 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCBTTTBCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCcCCCCCCHHHHHHHcCcHHH
Confidence 999999999999999999987543 77889999999999999999999
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL 249 (489)
|++|+++|++++. +.. |.||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+ ++.+++++|
T Consensus 206 v~~Ll~~ga~~~~-~~~----------g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~L 272 (285)
T 3d9h_A 206 VKKLLESGADVNQ-GKG----------QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLF 272 (285)
T ss_dssp HHHHHHTTCCTTC-CBT----------TBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHH
T ss_pred HHHHHHCCCCCCC-CCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHH
Confidence 9999999999995 544 999999999999999999999999999999999999999999 456788877
Q ss_pred cCCCCCCC
Q 011309 250 APSSDAVM 257 (489)
Q Consensus 250 ~~~~~~~~ 257 (489)
++.....+
T Consensus 273 l~~~~a~l 280 (285)
T 3d9h_A 273 LEREGASL 280 (285)
T ss_dssp HHHC----
T ss_pred HHhhccCC
Confidence 76644433
No 36
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.1e-32 Score=275.75 Aligned_cols=233 Identities=22% Similarity=0.091 Sum_probs=180.5
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccC-------------------------------CCCCCchHHHHHHHhCcH
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYS-------------------------------TFGGLNSPLHFAAAKGHN 58 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~-------------------------------~~~~g~TpLh~Aa~~G~~ 58 (489)
..||||+|++.|+.++|++||++|++++..+ .+..|.||||+|+..|+.
T Consensus 59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~ 138 (337)
T 4g8k_A 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV 138 (337)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcH
Confidence 3589999999999999999999998765432 223458999999999999
Q ss_pred HHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHc-cCCCC---CccccccccccccCCchhh
Q 011309 59 EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVAD-FVPSV---PFEVMNTQIEGDRGDGSSV 134 (489)
Q Consensus 59 eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~-~~~~~---~~~~~~l~~~~~~~~~~~~ 134 (489)
+++++|+++|++++..+............|.||||+|+..|+.++|++||+. +.+.+ ..+.+.++...........
T Consensus 139 ~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~ 218 (337)
T 4g8k_A 139 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV 218 (337)
T ss_dssp HHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTH
T ss_pred HHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccH
Confidence 9999999999999987765444444556899999999999999999999964 44332 2334444433322222111
Q ss_pred h-hhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCccccCCCCCcHHHHHHHcCCHHH
Q 011309 135 K-SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 212 (489)
Q Consensus 135 ~-~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ei 212 (489)
. ........+..+|.+|..|.||||+|+..|+.++|++|++. |++++.+|.. |+||||+|+..|+.++
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~----------G~TpL~~A~~~g~~~i 288 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD----------GKTALLLAVELKLKKI 288 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT----------SCBHHHHHHHTTCHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC----------CCCHHHHHHHcCCHHH
Confidence 1 11112233456889999999999999999999999999985 8999999977 9999999999999999
Q ss_pred HHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcC-CCCCCC
Q 011309 213 CQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVM 257 (489)
Q Consensus 213 vk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~-~~~~~~ 257 (489)
|++||++|||+|.+ +|||+|+..|+.+++++|++ ++++++
T Consensus 289 v~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 289 AELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred HHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence 99999999998765 59999999999999887765 455554
No 37
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.7e-33 Score=271.04 Aligned_cols=188 Identities=22% Similarity=0.196 Sum_probs=149.0
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCC----------
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ---------- 79 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~---------- 79 (489)
..||||+|+..|+.++|++|+++|++++..+..+ +||||+|+..|+.+++++|+++|++.+.......
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g--~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~ 122 (282)
T 1oy3_D 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGG--HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122 (282)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTS--CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcc
Confidence 4589999999999999999999999998877655 9999999999999999999999876322110000
Q ss_pred ---------------------------cccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCch
Q 011309 80 ---------------------------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS 132 (489)
Q Consensus 80 ---------------------------i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~ 132 (489)
.....+..|.||||+|+..|+.++|++|++.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------------- 183 (282)
T 1oy3_D 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD------------------- 183 (282)
T ss_dssp ---------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-------------------
T ss_pred hhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-------------------
Confidence 0111233899999999999999999999987654
Q ss_pred hhhhhhhhhhhhhhhccccC-CCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHH
Q 011309 133 SVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 211 (489)
Q Consensus 133 ~~~~~~~~~~~~~~in~~d~-~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~e 211 (489)
++..+. .|.||||+|+..|+.++|++|+++|++++.++.. |.||||+|+..|+.+
T Consensus 184 --------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~----------g~tpL~~A~~~~~~~ 239 (282)
T 1oy3_D 184 --------------LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG----------GRTPLGSALLRPNPI 239 (282)
T ss_dssp --------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHTSSCHH
T ss_pred --------------CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccC----------CCCHHHHHHHcCCcH
Confidence 666664 4999999999999999999999999999999976 999999999999999
Q ss_pred HHHHHHHcCCCCCccCCCCCcHHHHHHHcCc
Q 011309 212 CCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242 (489)
Q Consensus 212 ivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~ 242 (489)
++++|+++|++++.+|.+|+|||++|.....
T Consensus 240 ~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 240 LARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHHHHTTCCCCCCC---------------
T ss_pred HHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 9999999999999999999999999987653
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1e-32 Score=260.84 Aligned_cols=194 Identities=24% Similarity=0.237 Sum_probs=169.2
Q ss_pred CCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCC
Q 011309 21 GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH 100 (489)
Q Consensus 21 G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~ 100 (489)
|++++|++|++.|++++...+. .|+||||+|+..|+.++|++|+++|++++..|. .|+||||+|+..|+
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~ 70 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDR-TGETALHLAARYSRSDAAKRLLEASADANIQDN----------MGRTPLHAAVSADA 70 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTC
T ss_pred CcHHHHHHHHHcCCCcccccCC-CCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------CCCCHHHHHHHcCC
Confidence 7888999999999998765332 249999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCc
Q 011309 101 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 180 (489)
Q Consensus 101 ~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadv 180 (489)
.+++++|++.+.. .++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 71 ~~~v~~Ll~~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 118 (223)
T 2f8y_A 71 QGVFQILIRNRAT--------------------------------DLDARMHDGTTPLILAARLAVEGMLEDLINSHADV 118 (223)
T ss_dssp HHHHHHHHHBTTS--------------------------------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHcCCC--------------------------------CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC
Confidence 9999999976431 26777889999999999999999999999999999
Q ss_pred ccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCC
Q 011309 181 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPR 259 (489)
Q Consensus 181 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~ 259 (489)
+..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+. ++.+..
T Consensus 119 ~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~- 187 (223)
T 2f8y_A 119 NAVDDL----------GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT- 187 (223)
T ss_dssp TCBCTT----------SCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-
T ss_pred cCcCCC----------CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccc-
Confidence 999876 99999999999999999999999999999999999999999999999998877665 444443
Q ss_pred CCCCCCcchhhH
Q 011309 260 FHPSNYLSLPLL 271 (489)
Q Consensus 260 ~~~~~~~~~pl~ 271 (489)
+..+.+|+.
T Consensus 188 ---~~~g~t~l~ 196 (223)
T 2f8y_A 188 ---DHMDRLPRD 196 (223)
T ss_dssp ---CTTCCCHHH
T ss_pred ---cccCCCHHH
Confidence 445566643
No 39
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.5e-33 Score=275.90 Aligned_cols=208 Identities=22% Similarity=0.176 Sum_probs=169.3
Q ss_pred CchHHHHHHHHcCCHHHHHHHhh----cCCCCccc--CCCCCCchHHHHHHHh---CcHHHHHHHHHcCCCCCC------
Q 011309 9 ASGERLVSAARDGDFVEAKMLLD----CNPCLAKY--STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNS------ 73 (489)
Q Consensus 9 ~s~t~L~~Aa~~G~~~~Vk~LL~----~g~~l~~~--~~~~~g~TpLh~Aa~~---G~~eivk~LLe~Gad~n~------ 73 (489)
...++||.|++.|++++|+.|++ .+.+++.. ..+..|+||||+|+.. |+.++|++||++|++++.
T Consensus 12 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~ 91 (273)
T 2pnn_A 12 YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN 91 (273)
T ss_dssp CCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhh
Confidence 34689999999999999999987 45554421 1233459999999987 999999999999876432
Q ss_pred -----cCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhc
Q 011309 74 -----RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN 148 (489)
Q Consensus 74 -----~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in 148 (489)
.|. .|+||||+|+..|+.++|++|++.+...+........ .....+
T Consensus 92 ~~~~~~d~----------~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------~~~~~~ 142 (273)
T 2pnn_A 92 ASYTDSYY----------KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF-------------------KKTKGR 142 (273)
T ss_dssp CCCCSTTT----------TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG-------------------SSCSSS
T ss_pred cccccccC----------CCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc-------------------cccccc
Confidence 333 8999999999999999999999987653322211100 000134
Q ss_pred cccCCCccHHHHHHHcCCHHHHHHHHh---cCCCcccccccCCCccccCCCCCcHHHHHHHcCC---------HHHHHHH
Q 011309 149 KAADGGITALHMAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVL 216 (489)
Q Consensus 149 ~~d~~G~TpLh~Aa~~g~~e~v~~LL~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~---------~eivk~L 216 (489)
..+..|.||||+|+..|+.++|++|++ +|++++..+.. |+||||+|+..|+ .+++++|
T Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~----------g~tpLh~A~~~~~~~~~~~~~~~~~v~~L 212 (273)
T 2pnn_A 143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV----------GNTVLHALVEVADNTVDNTKFVTSMYNEI 212 (273)
T ss_dssp CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCC----------CCcHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 445689999999999999999999999 99999999976 9999999999998 8999999
Q ss_pred HHcCCCCC-------ccCCCCCcHHHHHHHcCcHhHHHHhcCCCCC
Q 011309 217 LSRGASRM-------SLNCNGWLPLDVARMWGRHWLEPLLAPSSDA 255 (489)
Q Consensus 217 L~~Gadvn-------~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~~ 255 (489)
+++|++++ .+|..|+||||+|+..|+.+++++|++.+..
T Consensus 213 l~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 213 LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258 (273)
T ss_dssp HHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence 99999997 4899999999999999999999888776654
No 40
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=100.00 E-value=2.1e-33 Score=272.27 Aligned_cols=207 Identities=21% Similarity=0.124 Sum_probs=167.7
Q ss_pred CchHHHHHHHHcCCHHHHHHHhh----cCCCCcccCCC--CCCchHHHHHH---HhCcHHHHHHHHHcCCCC--------
Q 011309 9 ASGERLVSAARDGDFVEAKMLLD----CNPCLAKYSTF--GGLNSPLHFAA---AKGHNEIVALLLENGADV-------- 71 (489)
Q Consensus 9 ~s~t~L~~Aa~~G~~~~Vk~LL~----~g~~l~~~~~~--~~g~TpLh~Aa---~~G~~eivk~LLe~Gad~-------- 71 (489)
...++||.|++.|+.+.|+.|++ .+.+++..... ..|.||||+|+ ..|+.++|++|++.|+++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 34689999999999996555555 89888766532 34599999999 779999999999988653
Q ss_pred ---CCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhc
Q 011309 72 ---NSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN 148 (489)
Q Consensus 72 ---n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in 148 (489)
+..|. .|+||||+|+..|+.++|++|++.+...+........ .....+
T Consensus 84 ~~~~~~d~----------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------~~~~~~ 134 (260)
T 3jxi_A 84 SPFRDVYY----------RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF-------------------QPKDEG 134 (260)
T ss_dssp CCBCCSSE----------ESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC-------------------SSSCCC
T ss_pred cccccccc----------CCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc-------------------Cccccc
Confidence 33333 7999999999999999999999987653222110000 000122
Q ss_pred cccCCCccHHHHHHHcCCHHHHHHHHh---cCCCcccccccCCCccccCCCCCcHHHHHHHcCC---------HHHHHHH
Q 011309 149 KAADGGITALHMAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVL 216 (489)
Q Consensus 149 ~~d~~G~TpLh~Aa~~g~~e~v~~LL~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~---------~eivk~L 216 (489)
..+..|.||||+|+..|+.++|++|++ +|++++..|.. |+||||+|+..++ .+++++|
T Consensus 135 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~----------g~TpLh~A~~~~~~~~~~~~~~~~~v~~L 204 (260)
T 3jxi_A 135 GYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR----------GNTVLHALVAIADNTRENTKFVTKMYDLL 204 (260)
T ss_dssp CSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCC----------CCcHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 233689999999999999999999999 99999999976 9999999999887 7999999
Q ss_pred HHcCCCC-------CccCCCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309 217 LSRGASR-------MSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 254 (489)
Q Consensus 217 L~~Gadv-------n~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~ 254 (489)
+++|+++ +.+|.+|+||||+|+..|+.+++++|++++.
T Consensus 205 l~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence 9999998 6799999999999999999999988876543
No 41
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.98 E-value=7.3e-33 Score=284.36 Aligned_cols=250 Identities=18% Similarity=0.128 Sum_probs=201.2
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHH--------HcCCCCCCcCCCCCcc
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL--------ENGADVNSRNYCGQVT 81 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LL--------e~Gad~n~~d~~g~i~ 81 (489)
..|+||.|+..|+ +++++|+.. +++..+. ..|+||||+|+..|+.++|++|+ ++|+++|.+|.
T Consensus 94 g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d~-~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~----- 164 (373)
T 2fo1_E 94 SPIKLHTEAAGSY-AITEPITRE--SVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC----- 164 (373)
T ss_dssp CCCHHHHHHHSSS-CCCSCCSTT--TTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT-----
T ss_pred CccHHHHHhcCCc-hHHHHhccc--cccccCC-cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC-----
Confidence 3578999999554 788888764 4444442 23489999999999998888776 88999999998
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHHccCCC---CCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHH
Q 011309 82 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITAL 158 (489)
Q Consensus 82 ~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpL 158 (489)
.|.||||+|+..|+.++|++|++.+... +..+.++++.+...+....+..+.........++..|..|.|||
T Consensus 165 -----~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L 239 (373)
T 2fo1_E 165 -----DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239 (373)
T ss_dssp -----TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred -----CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHH
Confidence 9999999999999999999999987644 34567888899888888888877776655567899999999999
Q ss_pred HHHHHcC---CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHH
Q 011309 159 HMAALNG---YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRMSLNCNGWLPL 234 (489)
Q Consensus 159 h~Aa~~g---~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G-advn~~d~~G~TpL 234 (489)
|+|+..+ +.+++++|+++|++++..+..... .....|.||||+|+..|+.++|++|+++| ++++.+|.+|+|||
T Consensus 240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~--~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL 317 (373)
T 2fo1_E 240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD--SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI 317 (373)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS--SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred HHHHHhCCcchHHHHHHHHHCCCCcccccccccC--cccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH
Confidence 9999998 899999999999999873210000 00124999999999999999999999876 99999999999999
Q ss_pred HHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHHHHHHHHHcCCc
Q 011309 235 DVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVLNVARECGLL 283 (489)
Q Consensus 235 ~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~~l~~a~~~G~~ 283 (489)
|+|+..|+.+++++|++. ++++.. +..+.+|+ .+|...|+.
T Consensus 318 ~~A~~~g~~~iv~~Ll~~gad~~~~----d~~g~t~l----~~A~~~g~~ 359 (373)
T 2fo1_E 318 MLAAQEGRIEVVMYLIQQGASVEAV----DATDHTAR----QLAQANNHH 359 (373)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSCC----CSSSCCHH----HHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccCC----CCCCCCHH----HHHHHcCCH
Confidence 999999999998887664 444443 45566774 455555554
No 42
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.98 E-value=8.6e-33 Score=272.36 Aligned_cols=188 Identities=21% Similarity=0.222 Sum_probs=170.7
Q ss_pred HHHHHHHHcCCHHHHHHHhhcCCC--CcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCC-CCCCcCCCCCcccccCCCC
Q 011309 12 ERLVSAARDGDFVEAKMLLDCNPC--LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSG 88 (489)
Q Consensus 12 t~L~~Aa~~G~~~~Vk~LL~~g~~--l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Ga-d~n~~d~~g~i~~~d~~~G 88 (489)
+++|.|+..|+++.++.|++.+.+ ++..+. .|+||||+|+..|+.++|++||++|+ +++..|. .|
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~--~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~----------~g 145 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADS--NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR----------AG 145 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT----------TS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC----------CC
Confidence 457899999999999999988766 444444 45999999999999999999999998 9999998 99
Q ss_pred ChHHHHHH-----HcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH
Q 011309 89 RTALHFAA-----VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163 (489)
Q Consensus 89 ~TpLh~Aa-----~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~ 163 (489)
.||||+|+ ..++.+++++|++.+.. .+..+..|.||||+|+.
T Consensus 146 ~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~tpLh~A~~ 192 (276)
T 4hbd_A 146 YSPIMLTALATLKTQDDIETVLQLFRLGNI---------------------------------NAKASQAGQTALMLAVS 192 (276)
T ss_dssp CCHHHHGGGCCCCSHHHHHHHHHHHHHSCT---------------------------------TCCCTTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHhhhhhhHHHHHHHHHcCCC---------------------------------ccccCCCCCCHHHHHHH
Confidence 99999999 67899999999976532 56678889999999999
Q ss_pred cCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCc
Q 011309 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGR 242 (489)
Q Consensus 164 ~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~d~~G~TpL~~A~~~g~ 242 (489)
.|+.++|++|+++|++++..|.. |+||||+|+..|+.++|++|++ .|+|++.+|.+|+||||+|+..|+
T Consensus 193 ~g~~~~v~~Ll~~gad~n~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~ 262 (276)
T 4hbd_A 193 HGRVDVVKALLACEADVNVQDDD----------GSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ 262 (276)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred cCCHHHHHHHHhCCCCCCCCCCC----------CCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC
Confidence 99999999999999999999976 9999999999999999999999 899999999999999999999999
Q ss_pred HhHHHHhcCCCC
Q 011309 243 HWLEPLLAPSSD 254 (489)
Q Consensus 243 ~~i~~LL~~~~~ 254 (489)
.+++++|.+..+
T Consensus 263 ~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 263 SEIASMLYSRMN 274 (276)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhccC
Confidence 999999977654
No 43
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.98 E-value=3.2e-31 Score=261.65 Aligned_cols=201 Identities=28% Similarity=0.377 Sum_probs=170.6
Q ss_pred HHHHHcCCHHHHHHHhhcCCCCcccCC-------CCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309 15 VSAARDGDFVEAKMLLDCNPCLAKYST-------FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLS 87 (489)
Q Consensus 15 ~~Aa~~G~~~~Vk~LL~~g~~l~~~~~-------~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~ 87 (489)
+.+++.|..+.++.++.....+..... ...+.||||+|+..|+.++|++||++|+++|..|. .
T Consensus 3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~ 72 (299)
T 1s70_B 3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANV----------D 72 (299)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT----------T
T ss_pred hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC----------C
Confidence 357888899999999987665433211 12347999999999999999999999999999998 8
Q ss_pred CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309 88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167 (489)
Q Consensus 88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~ 167 (489)
|.||||+|+..|+.++|++|++.+.. ++..|..|.||||+|+..|+.
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~~~~g~tpL~~A~~~g~~ 119 (299)
T 1s70_B 73 GLTALHQACIDDNVDMVKFLVENGAN---------------------------------INQPDNEGWIPLHAAASCGYL 119 (299)
T ss_dssp CCBHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHHTCH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCcHHHHHHHcCCH
Confidence 99999999999999999999987654 677788889999999999999
Q ss_pred HHHHHHHhcCCCcccccccCCCccccC--------------------------------------------------CCC
Q 011309 168 DCVQLLLDLHANVSAVTFHYGTSMDLI--------------------------------------------------GAG 197 (489)
Q Consensus 168 e~v~~LL~~Gadvn~~~~~~~~~~~~~--------------------------------------------------~~G 197 (489)
++|++|+++|++++..+..+.+++... ..|
T Consensus 120 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 199 (299)
T 1s70_B 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG 199 (299)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTC
T ss_pred HHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCC
Confidence 999999999998888877666665321 358
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCC
Q 011309 198 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMP 258 (489)
Q Consensus 198 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~ 258 (489)
.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++. ++++..
T Consensus 200 ~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~ 261 (299)
T 1s70_B 200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261 (299)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc
Confidence 9999999999999999999999999999999999999999999999998777654 454444
No 44
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=1.2e-31 Score=273.05 Aligned_cols=207 Identities=22% Similarity=0.156 Sum_probs=178.8
Q ss_pred CCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCC-cccc
Q 011309 42 FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP-FEVM 120 (489)
Q Consensus 42 ~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~-~~~~ 120 (489)
+..|+||||+|+..|+.++|++||++|++++..|. .|.||||+|+..|+.++|++|++.+..... .+.+
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~----------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t 86 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR----------FGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK 86 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC----------CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC
Confidence 33459999999999999999999999999999998 999999999999999999999998876555 7788
Q ss_pred ccccccccCCchhhhhhhhhhhh-hhhh-----------------ccccCCCccHHHHHHHcC--CHHHHHHHHhcCCCc
Q 011309 121 NTQIEGDRGDGSSVKSKCDQSAL-SKFV-----------------NKAADGGITALHMAALNG--YFDCVQLLLDLHANV 180 (489)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~-~~~i-----------------n~~d~~G~TpLh~Aa~~g--~~e~v~~LL~~Gadv 180 (489)
+++.+...+....+..+...... ...+ +..|..|.||||+|+..| +.++|++|+++|+++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~ 166 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP 166 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence 99999988888887777655211 1222 338889999999999999 999999999999999
Q ss_pred ccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CC
Q 011309 181 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS-----RMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SD 254 (489)
Q Consensus 181 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad-----vn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~ 254 (489)
+..+.. |.||||+|+..|+.++|++|+++|++ ++.+|..|+||||+|+..|+.+++++|++. ++
T Consensus 167 ~~~d~~----------g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad 236 (364)
T 3ljn_A 167 TAKDKA----------DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236 (364)
T ss_dssp TCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC
T ss_pred cccCCC----------CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999876 99999999999999999999999999 999999999999999999999998888764 44
Q ss_pred CCCCCCCCCCCcchhhHH
Q 011309 255 AVMPRFHPSNYLSLPLLS 272 (489)
Q Consensus 255 ~~~~~~~~~~~~~~pl~~ 272 (489)
++.. +..+.+|++.
T Consensus 237 ~~~~----d~~g~tpL~~ 250 (364)
T 3ljn_A 237 VNME----DNEHTVPLYL 250 (364)
T ss_dssp TTCC----CTTSCCHHHH
T ss_pred CCCC----CCCCCCHHHH
Confidence 4443 4566677543
No 45
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.3e-31 Score=243.60 Aligned_cols=168 Identities=26% Similarity=0.224 Sum_probs=145.0
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCC-CcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPC-LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~-l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
.+|||.|+..|++++|++|++.++. ++..+.. |+||||+|+..|+.++|++|+++|++++..|. .|.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~ 70 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDER--GFTPLIWASAFGEIETVRFLLEWGADPHILAK----------ERE 70 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTT--SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----------TCC
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc----------cCC
Confidence 4679999999999999999999887 4444444 48999999999999999999999999999988 899
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.+.. ++.+|..|.||||+|+..|+.++
T Consensus 71 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~ 117 (172)
T 3v30_A 71 SALSLASTGGYTDIVGLLLERDVD---------------------------------INIYDWNGGTPLLYAVRGNHVKC 117 (172)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence 999999999999999999976543 77888899999999999999999
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 233 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~Tp 233 (489)
|++|+++|++++..+.. |.||||+|+..|+.+++++|+++|+++...+..|.||
T Consensus 118 v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 118 VEALLARGADLTTEADS----------GYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHcCCCccccCCC----------CCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 99999999999998876 9999999999999999999999999999888888887
No 46
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=6.1e-31 Score=238.02 Aligned_cols=156 Identities=26% Similarity=0.422 Sum_probs=133.6
Q ss_pred CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123 (489)
Q Consensus 44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~ 123 (489)
.|.||||+|+..|+.++|++|++.|++++..|. .|.||||+|+..|+.+++++|++.+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------- 61 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE----------EGFTPLMWAAAHGQIAVVEFLLQNGAD---------- 61 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC----------CCCCHHHHHHHCCCHHHHHHHHHcCCC----------
Confidence 357889999999999999999888888888887 888999999999999999988876543
Q ss_pred cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203 (489)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 203 (489)
++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+
T Consensus 62 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~ 108 (167)
T 3v31_A 62 -----------------------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLY 108 (167)
T ss_dssp -----------------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT----------SCCHHHH
T ss_pred -----------------------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCC----------CCCHHHH
Confidence 5667788889999999999999999999888888888766 8889999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 252 (489)
Q Consensus 204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~ 252 (489)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus 109 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 109 AVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 9999999999999999999888888899999999999888888887654
No 47
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=2.3e-31 Score=257.86 Aligned_cols=219 Identities=21% Similarity=0.203 Sum_probs=152.5
Q ss_pred CcccCCCCCCchHHHHHHHhC-------------cHHHHHHHHHcCCCCCCc-CCCCCcccccCCCCChHHHHHHHcCCH
Q 011309 36 LAKYSTFGGLNSPLHFAAAKG-------------HNEIVALLLENGADVNSR-NYCGQVTRADYLSGRTALHFAAVNGHV 101 (489)
Q Consensus 36 l~~~~~~~~g~TpLh~Aa~~G-------------~~eivk~LLe~Gad~n~~-d~~g~i~~~d~~~G~TpLh~Aa~~g~~ 101 (489)
++..+.+ |+||||+|+..| +.+++++|+++|++++.. |. .|+||||+|+..|+.
T Consensus 3 vn~~d~~--g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~----------~g~t~L~~A~~~g~~ 70 (253)
T 1yyh_A 3 VNVRGPD--GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR----------TGETALHLAARYSRS 70 (253)
T ss_dssp ---------------------------------------------------CCCT----------TSCCHHHHHHHTTCH
T ss_pred CCCCCCC--CCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCC----------CCCcHHHHHHHcCCH
Confidence 4444444 499999999987 899999999999998654 65 899999999999999
Q ss_pred HHHHHHHHccCCCC---CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCC
Q 011309 102 RCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 178 (489)
Q Consensus 102 ~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Ga 178 (489)
++|++|++.+...+ ..+.++++.+...+....+..+.... ...++..+..|.||||+|+..|+.+++++|+++|+
T Consensus 71 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 148 (253)
T 1yyh_A 71 DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR--ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148 (253)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHST--TSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCC
Confidence 99999999876543 45677888888877777666654432 12478889999999999999999999999999999
Q ss_pred CcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCC
Q 011309 179 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVM 257 (489)
Q Consensus 179 dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~ 257 (489)
+++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+. ++.+.
T Consensus 149 ~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~ 218 (253)
T 1yyh_A 149 DVNAVDDL----------GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 218 (253)
T ss_dssp CTTCBCTT----------SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred CCCCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc
Confidence 99999876 99999999999999999999999999999999999999999999999998877665 44444
Q ss_pred CCCCCCCCcchhhHHHHHHHHHcCCcccc
Q 011309 258 PRFHPSNYLSLPLLSVLNVARECGLLSST 286 (489)
Q Consensus 258 ~~~~~~~~~~~pl~~~l~~a~~~G~~~~~ 286 (489)
. +..+.+| +.+|.+.|+..+.
T Consensus 219 ~----d~~g~tp----l~~A~~~g~~~i~ 239 (253)
T 1yyh_A 219 T----DHMDRLP----RDIAQERMHHDIV 239 (253)
T ss_dssp C----CTTCCCH----HHHHHHTTCHHHH
T ss_pred c----ccCCCCH----HHHHHHcCCHHHH
Confidence 3 4556677 4566677765443
No 48
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=1.4e-30 Score=236.70 Aligned_cols=155 Identities=37% Similarity=0.502 Sum_probs=147.0
Q ss_pred CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 124 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~ 124 (489)
+.|+|+.|++.|+.++|++|+++|++++.+|. .|.||||+|+..|+.+++++|++.+..
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------- 72 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDA----------SGWTPLHLAAFNGHLEIVEVLLKNGAD----------- 72 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence 48999999999999999999999999999998 899999999999999999999987543
Q ss_pred ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309 125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 204 (489)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A 204 (489)
++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|
T Consensus 73 ----------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A 120 (169)
T 2y1l_E 73 ----------------------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME----------GHTPLHLA 120 (169)
T ss_dssp ----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHH
T ss_pred ----------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHHH
Confidence 6778889999999999999999999999999999998876 99999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309 205 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 252 (489)
Q Consensus 205 a~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~ 252 (489)
+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus 121 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 121 AMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999764
No 49
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=1.1e-30 Score=234.61 Aligned_cols=157 Identities=27% Similarity=0.370 Sum_probs=144.8
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
.+++||.|++.|++++|++|++.|++++..+..+ +||||+|+. |+.+++++|+++|++++.+|. .|.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g--~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~----------~g~ 71 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGANPDLKDR----------TGF 71 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTS--CCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT----------TSC
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccC--ccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC----------CCC
Confidence 4689999999999999999999999988776655 999999999 999999999999999999998 999
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.+.. ++.+|..|.||||+|+..|+.++
T Consensus 72 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~ 118 (162)
T 1ihb_A 72 AVIHDAARAGFLDTLQTLLEFQAD---------------------------------VNIEDNEGNLPLHLAAKEGHLRV 118 (162)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcCCHHH
Confidence 999999999999999999986543 77889999999999999999999
Q ss_pred HHHHHhcCCC-cccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309 170 VQLLLDLHAN-VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222 (489)
Q Consensus 170 v~~LL~~Gad-vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 222 (489)
+++|+++|++ ++..+.. |.||||+|+..|+.+++++|+++|||
T Consensus 119 v~~Ll~~g~~~~~~~~~~----------g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 119 VEFLVKHTASNVGHRNHK----------GDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHSCCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHHHHccCCCCCCcCCC----------CCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999999998 5887766 99999999999999999999999986
No 50
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=7.6e-31 Score=243.11 Aligned_cols=156 Identities=26% Similarity=0.311 Sum_probs=147.3
Q ss_pred CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123 (489)
Q Consensus 44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~ 123 (489)
.|+||||+|+..|+.++|++|+++|++++..|. .|+||||+|+..|+.+++++|++.+..
T Consensus 34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------- 93 (192)
T 2rfm_A 34 YNRTPLMVACMLGMENAIDKLVENFDKLEDKDI----------EGSTALIWAVKNNRLGIAEKLLSKGSN---------- 93 (192)
T ss_dssp TCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHHTCC----------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhccccccccc----------cCccHHHHHHHcCCHHHHHHHHHCCCC----------
Confidence 349999999999999999999999999999998 899999999999999999999986543
Q ss_pred cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203 (489)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 203 (489)
++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+
T Consensus 94 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~ 140 (192)
T 2rfm_A 94 -----------------------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE----------GETPLIV 140 (192)
T ss_dssp -----------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT----------CCCHHHH
T ss_pred -----------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHH
Confidence 7788899999999999999999999999999999999876 9999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 252 (489)
Q Consensus 204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~ 252 (489)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus 141 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 141 ASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998653
No 51
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2.1e-30 Score=246.58 Aligned_cols=189 Identities=27% Similarity=0.316 Sum_probs=153.3
Q ss_pred CchHHHHHHHhCcHHHHHHHHHc-CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe~-Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~ 123 (489)
|+||||+|+..|+.++|++||+. |++++.+|. .|+||||+|+..|+.+++++|++.+...
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~----------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--------- 63 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGA----------MGETALHIAALYDNLEAAMVLMEAAPEL--------- 63 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHHCGGG---------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCC----------CCCCHHHHHHHcCCHHHHHHHHHcCchh---------
Confidence 48999999999999999999998 999999998 9999999999999999999999864320
Q ss_pred cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcc---ccCCCCCcH
Q 011309 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM---DLIGAGSTP 200 (489)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~---~~~~~G~Tp 200 (489)
.....+..|..|.||||+|+..|+.+++++|+++|++++..+....... .....|.||
T Consensus 64 -------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~ 124 (232)
T 2rfa_A 64 -------------------VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124 (232)
T ss_dssp -------------------GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSH
T ss_pred -------------------ccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCH
Confidence 0011366788999999999999999999999999999998764210000 011249999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH----HHhcCCCC-CCCCC--CCCCCCcchhhH
Q 011309 201 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE----PLLAPSSD-AVMPR--FHPSNYLSLPLL 271 (489)
Q Consensus 201 Lh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~----~LL~~~~~-~~~~~--~~~~~~~~~pl~ 271 (489)
||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+..|+.+++ ++|.+.+. ..... ...+..+.+|++
T Consensus 125 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~ 202 (232)
T 2rfa_A 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK 202 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHH
Confidence 9999999999999999999999999999999999999999999876 66665443 32111 122556677754
No 52
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=3.8e-30 Score=229.84 Aligned_cols=151 Identities=27% Similarity=0.330 Sum_probs=135.8
Q ss_pred chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccc
Q 011309 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIE 125 (489)
Q Consensus 46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~ 125 (489)
.|+||.|+..|+.++|++|+++|++++ .+. .|.||||+|+..|+.+++++|++.+..
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------ 59 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDW----------LGTSPLHLAAQYGHFSTTEVLLRAGVS------------ 59 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCT----------TCCCHHHHHHHHTCHHHHHHHHTTTCC------------
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence 689999999999999999999999887 354 799999999999999999999976433
Q ss_pred cccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHH
Q 011309 126 GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 205 (489)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa 205 (489)
++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+
T Consensus 60 ---------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~ 108 (153)
T 1awc_B 60 ---------------------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML----------KMTALHWAT 108 (153)
T ss_dssp ---------------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------SCCHHHHHH
T ss_pred ---------------------CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHH
Confidence 6777888999999999999999999999999999988866 999999999
Q ss_pred HcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhc
Q 011309 206 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA 250 (489)
Q Consensus 206 ~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~ 250 (489)
..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.
T Consensus 109 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~ 153 (153)
T 1awc_B 109 EHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153 (153)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence 999999999999999999999999999999999999999998873
No 53
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.97 E-value=6.8e-30 Score=232.24 Aligned_cols=157 Identities=34% Similarity=0.480 Sum_probs=146.0
Q ss_pred CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG 88 (489)
Q Consensus 9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G 88 (489)
...++|+.|++.|++++|++|++.|++++..+..+ .||||+|+..|+.++|++|+++|++++..|. .|
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g 80 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASG--WTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----------AG 80 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TS
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----------CC
Confidence 44679999999999999999999999988776655 8999999999999999999999999999998 89
Q ss_pred ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309 89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168 (489)
Q Consensus 89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e 168 (489)
.||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|+.+
T Consensus 81 ~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~ 127 (169)
T 2y1l_E 81 MTPLRLAALFGHLEIVEVLLKNGAD---------------------------------VNANDMEGHTPLHLAAMFGHLE 127 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHH
Confidence 9999999999999999999987543 6788899999999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 011309 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220 (489)
Q Consensus 169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G 220 (489)
++++|+++|++++..+.. |.||||+|+..|+.+++++|++.|
T Consensus 128 ~v~~Ll~~g~~~~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 128 IVEVLLKNGADVNAQDKF----------GKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHcCCCCCCcCCC----------CCCHHHHHHHhCCHHHHHHHHHcC
Confidence 999999999999998876 999999999999999999999876
No 54
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=2.8e-30 Score=232.01 Aligned_cols=154 Identities=32% Similarity=0.437 Sum_probs=145.4
Q ss_pred chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccc
Q 011309 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIE 125 (489)
Q Consensus 46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~ 125 (489)
.||||+|+..|+.++|++|+++|++++..|. .|+||||+|+. |+.+++++|++.+..
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~g~t~L~~A~~-~~~~~v~~Ll~~g~~------------ 62 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNG----------FGRTALQVMKL-GNPEIARRLLLRGAN------------ 62 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT----------TSCCHHHHCCS-SCHHHHHHHHHTTCC------------
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCc----------cCccHHHHHHc-CcHHHHHHHHHcCCC------------
Confidence 7999999999999999999999999999998 99999999999 999999999987543
Q ss_pred cccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHH
Q 011309 126 GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 205 (489)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa 205 (489)
++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+
T Consensus 63 ---------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~ 111 (162)
T 1ihb_A 63 ---------------------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE----------GNLPLHLAA 111 (162)
T ss_dssp ---------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHH
T ss_pred ---------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHH
Confidence 6788889999999999999999999999999999999876 999999999
Q ss_pred HcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309 206 CGGNLKCCQVLLSRGAS-RMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 253 (489)
Q Consensus 206 ~~g~~eivk~LL~~Gad-vn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~ 253 (489)
..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|.+.+
T Consensus 112 ~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999999999998 6999999999999999999999998887654
No 55
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=4.1e-30 Score=232.59 Aligned_cols=161 Identities=25% Similarity=0.287 Sum_probs=149.0
Q ss_pred CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG 88 (489)
Q Consensus 9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G 88 (489)
.+.||||.|+..|++++|++|++.+.+++..+..+ +||||+|+..|+.++|++|+++|++++..+. .|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g 69 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEG--FTPLMWAAAHGQIAVVEFLLQNGADPQLLGK----------GR 69 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TC
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCC--CCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC----------CC
Confidence 34578999999999999999999999888777655 8999999999999999999999999999998 89
Q ss_pred ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309 89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168 (489)
Q Consensus 89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e 168 (489)
.||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|+.+
T Consensus 70 ~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~ 116 (167)
T 3v31_A 70 ESALSLACSKGYTDIVKMLLDCGVD---------------------------------VNEYDWNGGTPLLYAVHGNHVK 116 (167)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCcCCCCCCCHHHHHHHcCCHH
Confidence 9999999999999999999986543 7788999999999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 011309 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224 (489)
Q Consensus 169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn 224 (489)
++++|+++|++++..+.. |.||||+|+..|+.+++++|+++++++.
T Consensus 117 ~v~~Ll~~g~~~~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 117 CVKMLLESGADPTIETDS----------GYNSMDLAVALGYRSVQQVIESHLLKLL 162 (167)
T ss_dssp HHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 999999999999998876 9999999999999999999999877643
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=5.3e-30 Score=232.99 Aligned_cols=157 Identities=27% Similarity=0.417 Sum_probs=145.3
Q ss_pred CchHHHHHHHhCcHHHHHHHHHcCCC-CCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLENGAD-VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe~Gad-~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~ 123 (489)
+.||||+|+..|+.++|++|++.|.+ ++..|. .|+||||+|+..|+.+++++|++.+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------- 61 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE----------RGFTPLIWASAFGEIETVRFLLEWGAD---------- 61 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT----------TSCCHHHHHHHTTCHHHHHHHHHHTCC----------
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence 37999999999999999999999887 788887 899999999999999999999987543
Q ss_pred cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203 (489)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 203 (489)
++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+
T Consensus 62 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~ 108 (172)
T 3v30_A 62 -----------------------PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLY 108 (172)
T ss_dssp -----------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT----------SCCHHHH
T ss_pred -----------------------chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHH
Confidence 6788889999999999999999999999999999999876 9999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 254 (489)
Q Consensus 204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~ 254 (489)
|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|.+...
T Consensus 109 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 109 AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159 (172)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988876543
No 57
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=1.2e-30 Score=263.14 Aligned_cols=196 Identities=14% Similarity=0.086 Sum_probs=154.0
Q ss_pred HHHHHHHcCCHHHHHHHhhcCCCCcc-cCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChH
Q 011309 13 RLVSAARDGDFVEAKMLLDCNPCLAK-YSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTA 91 (489)
Q Consensus 13 ~L~~Aa~~G~~~~Vk~LL~~g~~l~~-~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~Tp 91 (489)
.+|.|+..+..++++.|++.|.+++. .+..+ +||||+|+..|+.++|++||++|++++.+|. .|+||
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g--~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~----------~g~Tp 167 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG--NTPLHWLTSIANLELVKHLVKHGSNRLYGDN----------MGESC 167 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCSCSCCSTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT----------TCCCH
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCcccccCCCC--CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------CCCCH
Confidence 35888888999999999999999988 56555 9999999999999999999999999999998 99999
Q ss_pred HHHHHHcCC---HHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH----c
Q 011309 92 LHFAAVNGH---VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL----N 164 (489)
Q Consensus 92 Lh~Aa~~g~---~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~----~ 164 (489)
||+|+..|+ .++++.|++.+ ...++.+|..|.||||+|+. .
T Consensus 168 Lh~A~~~g~~~~~~~~~~ll~~~--------------------------------~~~~~~~d~~g~tpLh~A~~~~~~~ 215 (327)
T 1sw6_A 168 LVKAVKSVNNYDSGTFEALLDYL--------------------------------YPCLILEDSMNRTILHHIIITSGMT 215 (327)
T ss_dssp HHHHHHSSHHHHTTCHHHHHHHH--------------------------------GGGGGEECTTCCCHHHHHHHHHTST
T ss_pred HHHHHHhcccccHHHHHHHHHhh--------------------------------hccccCCCCCCCCHHHHHHHHcccc
Confidence 999999999 67777777532 12378889999999999999 8
Q ss_pred CCHHHHHHHHhc--------------------CCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 011309 165 GYFDCVQLLLDL--------------------HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224 (489)
Q Consensus 165 g~~e~v~~LL~~--------------------Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn 224 (489)
|+.+++++|++. |++++..+.. |.||||+|+. +++|+++ +++
T Consensus 216 g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~----------g~t~L~~a~~------~~~Ll~~--~~n 277 (327)
T 1sw6_A 216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE----------RKDSILENLD------LKWIIAN--MLN 277 (327)
T ss_dssp TCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------------------CHHHHHCS------HHHHHHH--TTT
T ss_pred ccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc----------CCChhHHHHH------HHHHHHh--CCC
Confidence 999999999987 8888888866 9999999985 8999988 688
Q ss_pred ccCCCCCcHHHHHHHcCcHhHHHHhcC-CCCCCCCCCCCCCCcchhhHHHH
Q 011309 225 SLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLSVL 274 (489)
Q Consensus 225 ~~d~~G~TpL~~A~~~g~~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~~l 274 (489)
.+|.+|+||||+|+..|+.+++++|++ +++++.. +..+.+|++.++
T Consensus 278 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~----d~~G~TpL~~A~ 324 (327)
T 1sw6_A 278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA----NKSGLRPVDFGA 324 (327)
T ss_dssp CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC----CTTSCCGGGGTC
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHHHH
Confidence 899999999999999999998877755 4555444 556677766543
No 58
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=7.7e-30 Score=233.88 Aligned_cols=165 Identities=24% Similarity=0.304 Sum_probs=123.3
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCC-CCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~-~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
.++||.|++.|++++|++|++.+. +++..+..+ +||||+|+..|+.++|++|+++|++++..|. .|.
T Consensus 6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~ 73 (179)
T 3f6q_A 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHG--FSPLHWACREGRSAVVEMLIMRGARINVMNR----------GDD 73 (179)
T ss_dssp -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCC
T ss_pred HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCC--CCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC----------CCC
Confidence 456888888888888888887743 444444433 7888888888888888888888888887776 777
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|+.++
T Consensus 74 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~d~~g~t~L~~A~~~~~~~~ 120 (179)
T 3f6q_A 74 TPLHLAASHGHRDIVQKLLQYKAD---------------------------------INAVNEHGNVPLHYACFWGQDQV 120 (179)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCccCCCCCCHHHHHHHcCCHHH
Confidence 888888888888888888765433 66677778888888888888888
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 230 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G 230 (489)
+++|+++|++++..+.. |.||||+|+..++.+++++|+++|++++..+..+
T Consensus 121 v~~Ll~~ga~~~~~~~~----------g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 121 AEDLVANGALVSICNKY----------GEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp HHHHHHTTCCSSBCCTT----------SCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred HHHHHHCCCCcchhccC----------CCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 88888888887777765 7788888888778888888888888877665543
No 59
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=1.3e-30 Score=257.85 Aligned_cols=180 Identities=18% Similarity=0.175 Sum_probs=163.0
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC-
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG- 88 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G- 88 (489)
..||||+|+..|+.++|++|+++|++++..+..+ +||||+|+..|+.++|++|+++|++++..+. .|
T Consensus 62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------~g~ 129 (285)
T 3kea_A 62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG--NTALYYAVDSGNMQTVKLFVKKNWRLMFYGK----------TGW 129 (285)
T ss_dssp TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS----------SGG
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CcHHHHHHHcCCHHHHHHHHhcCCCCCccCC----------CCC
Confidence 4689999999999999999999999998877655 9999999999999999999999999999998 78
Q ss_pred ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccC-CCccHHHHHHHcCCH
Q 011309 89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYF 167 (489)
Q Consensus 89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~-~G~TpLh~Aa~~g~~ 167 (489)
.||||+|+..|+.+++++|++.+.. ..+. .|.||||+|+..|+.
T Consensus 130 ~t~L~~A~~~~~~~~v~~Ll~~g~~-----------------------------------~~~~~~g~t~L~~A~~~g~~ 174 (285)
T 3kea_A 130 KTSFYHAVMLNDVSIVSYFLSEIPS-----------------------------------TFDLAILLSCIHITIKNGHV 174 (285)
T ss_dssp GSHHHHHHHTTCHHHHHHHHTTSCT-----------------------------------TCCCSTHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCc-----------------------------------cccccCCccHHHHHHHcChH
Confidence 7999999999999999999976532 1222 789999999999999
Q ss_pred HHHHHHHhcCCCcccccccCCCccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE 246 (489)
Q Consensus 168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~Tp-Lh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~ 246 (489)
++|++|+++|++++..+.. |.|| ||+|+..|+.+++++|+++|++++.+|. .|+..|+.+++
T Consensus 175 ~~v~~Ll~~gad~n~~~~~----------g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv 237 (285)
T 3kea_A 175 DMMILLLDYMTSTNTNNSL----------LFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIA 237 (285)
T ss_dssp HHHHHHHHHHHHTCTTCCC----------BCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHH
T ss_pred HHHHHHHHcCCCCCcccCC----------CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHH
Confidence 9999999999999999876 8897 9999999999999999999999999983 56779999999
Q ss_pred HHhcCCC
Q 011309 247 PLLAPSS 253 (489)
Q Consensus 247 ~LL~~~~ 253 (489)
++|.+.+
T Consensus 238 ~~Ll~~g 244 (285)
T 3kea_A 238 KMIIEKH 244 (285)
T ss_dssp HHHHHHH
T ss_pred HHHHHcC
Confidence 8887643
No 60
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=3.1e-30 Score=246.57 Aligned_cols=182 Identities=25% Similarity=0.241 Sum_probs=157.3
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
..||||+|+..|+.++|++|+++|++++..+..+ +||||+|+..|+.+++++|+++|++++.... ....+..|.
T Consensus 45 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----~~~~~~~g~ 118 (236)
T 1ikn_D 45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG--NTPLHLACEQGCLASVGVLTQSCTTPHLHSI----LKATNYNGH 118 (236)
T ss_dssp CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTC--CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG----GGCCCTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHhcccchhHHHH----hhccCCCCC
Confidence 3589999999999999999999999998877655 9999999999999999999999987432110 111223899
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccC-CCccHHHHHHHcCCHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYFD 168 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~-~G~TpLh~Aa~~g~~e 168 (489)
||||+|+..|+.+++++|++.+.. ++.++. .|.||||+|+..|+.+
T Consensus 119 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~~g~tpL~~A~~~~~~~ 165 (236)
T 1ikn_D 119 TCLHLASIHGYLGIVELLVSLGAD---------------------------------VNAQEPCNGRTALHLAVDLQNPD 165 (236)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCC---------------------------------TTCCCTTTCCCHHHHHHHTTCHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCCCHHHHHHHcCCHH
Confidence 999999999999999999987644 677777 8999999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCcHHHHHHHc
Q 011309 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM--SLNCNGWLPLDVARMW 240 (489)
Q Consensus 169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn--~~d~~G~TpL~~A~~~ 240 (489)
+|++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++.. ..+..|.||++.+...
T Consensus 166 ~v~~Ll~~ga~~~~~~~~----------g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 166 LVSLLLKCGADVNRVTYQ----------GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHHHHHTTTCCSCCCCTT----------CCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred HHHHHHHcCCCCCcccCC----------CCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 999999999999999876 9999999999999999999999999866 7789999988766543
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=1.9e-29 Score=233.66 Aligned_cols=156 Identities=24% Similarity=0.253 Sum_probs=146.0
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
..||||+|+..|+.++|++|++.|++++..+..+ +||||+|+..|+.++|++|+++|++++..|. .|.
T Consensus 35 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~ 102 (192)
T 2rfm_A 35 NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEG--STALIWAVKNNRLGIAEKLLSKGSNVNTKDF----------SGK 102 (192)
T ss_dssp CCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----------TSC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhccccccccccC--ccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCC
Confidence 4578999999999999999999999988776655 9999999999999999999999999999998 899
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.+.. ++.+|..|.||||+|+..|+.++
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~ 149 (192)
T 2rfm_A 103 TPLMWSIIFGYSEMSYFLLEHGAN---------------------------------VNDRNLEGETPLIVASKYGRSEI 149 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------SSCCCTTCCCHHHHHHHHTCHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence 999999999999999999987544 77889999999999999999999
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G 220 (489)
+++|+++|++++..+.. |.||||+|+..|+.+++++|+++|
T Consensus 150 v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 150 VKKLLELGADISARDLT----------GLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHTTCCTTCBCTT----------SCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCcCCC----------CCCHHHHHHHhCcHHHHHHHHhcc
Confidence 99999999999999876 999999999999999999999875
No 62
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.96 E-value=6.4e-29 Score=221.86 Aligned_cols=150 Identities=29% Similarity=0.373 Sum_probs=139.4
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT 90 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T 90 (489)
+++|+.|++.|++++|++|++.|++++. +..|.||||+|+..|+.+++++|+++|++++..|. .|+|
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~t 69 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK----------VDRT 69 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCCC---CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT----------TCCC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------CCCC
Confidence 6899999999999999999999997752 33448999999999999999999999999999998 8999
Q ss_pred HHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHH
Q 011309 91 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 170 (489)
Q Consensus 91 pLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v 170 (489)
|||+|+..|+.+++++|++.+.. ++.+|..|.||||+|+..|+.+++
T Consensus 70 ~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v 116 (153)
T 1awc_B 70 PLHMAASEGHANIVEVLLKHGAD---------------------------------VNAKDMLKMTALHWATEHNHQEVV 116 (153)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHcChHHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHH
Confidence 99999999999999999976543 778899999999999999999999
Q ss_pred HHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 011309 171 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216 (489)
Q Consensus 171 ~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~L 216 (489)
++|+++|++++..+.. |.||||+|+..|+.+++++|
T Consensus 117 ~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 117 ELLIKYGADVHTQSKF----------CKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCCccccCCC----------CCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999876 99999999999999999987
No 63
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.8e-29 Score=227.94 Aligned_cols=162 Identities=31% Similarity=0.411 Sum_probs=141.2
Q ss_pred CCCCCchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCccccc
Q 011309 5 FGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRAD 84 (489)
Q Consensus 5 ~gcs~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d 84 (489)
++.+...++||.|++.|++++|++|++.+.. +....+..|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-------- 73 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSV-NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-------- 73 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTTTT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--------
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcCCC-CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC--------
Confidence 4455567899999999999999999996542 2233334458999999999999999999999999999998
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHc
Q 011309 85 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164 (489)
Q Consensus 85 ~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~ 164 (489)
.|+||||+|+..|+.+++++|++.+.. ++.+|..|.||||+|+..
T Consensus 74 --~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~ 118 (165)
T 3twr_A 74 --GGLVPLHNACSYGHYEVAELLVKHGAV---------------------------------VNVADLWKFTPLHEAAAK 118 (165)
T ss_dssp --TSCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHT
T ss_pred --CCCCHHHHHHHcCcHHHHHHHHhCCCC---------------------------------CCCcCCCCCCHHHHHHHc
Confidence 899999999999999999999987543 778889999999999999
Q ss_pred CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 011309 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221 (489)
Q Consensus 165 g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga 221 (489)
|+.+++++|+++|++++..+.. |.||||+|+. |+.+++++|+++||
T Consensus 119 ~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 119 GKYEICKLLLQHGADPTKKNRD----------GNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTT----------SCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CCHHHHHHHHHcCCCCcccCCC----------CCChhHhHhc-CChHHHHHHhhccc
Confidence 9999999999999999999976 9999999877 89999999999886
No 64
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.8e-29 Score=227.90 Aligned_cols=156 Identities=29% Similarity=0.386 Sum_probs=143.5
Q ss_pred CchHHHHHHHhCcHHHHHHHHH-cCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe-~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~ 123 (489)
+.||||.|+..|+.++|++|++ .+.+++..+. .|+||||+|+..|+.+++++|++.+..
T Consensus 8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------- 67 (165)
T 3twr_A 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG----------RQSTPLHFAAGYNRVSVVEYLLQHGAD---------- 67 (165)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT----------TCCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred hhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc----------CCCCHHHHHHHcChHHHHHHHHhcCCC----------
Confidence 4899999999999999999998 4677777776 899999999999999999999987543
Q ss_pred cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203 (489)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 203 (489)
++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+
T Consensus 68 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~ 114 (165)
T 3twr_A 68 -----------------------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW----------KFTPLHE 114 (165)
T ss_dssp -----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHH
T ss_pred -----------------------CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCC----------CCCHHHH
Confidence 7788899999999999999999999999999999999876 9999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD 254 (489)
Q Consensus 204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~ 254 (489)
|+..|+.+++++|+++|++++.+|.+|+||||+|+. ++.+++++|...+.
T Consensus 115 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 999999999999999999999999999999999877 88999999987654
No 65
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=4.9e-29 Score=222.68 Aligned_cols=153 Identities=24% Similarity=0.299 Sum_probs=143.0
Q ss_pred CchHHHHHHHhCcHHHHHHHHHc-CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe~-Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~ 123 (489)
+.||||+|+..|+.+++++|++. +.+++..|. .|+||||+ +..|+.+++++|++.+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------~g~t~L~~-~~~~~~~~v~~Ll~~g~~---------- 60 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR----------FGKTALQV-MMFGSTAIALELLKQGAS---------- 60 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT----------TSCCHHHH-SCTTCHHHHHHHHHTTCC----------
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC----------CCCcHHHH-HHcCCHHHHHHHHHCCCC----------
Confidence 36999999999999999999998 459999988 89999999 999999999999987544
Q ss_pred cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203 (489)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 203 (489)
++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+
T Consensus 61 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~ 107 (156)
T 1bd8_A 61 -----------------------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT----------GALPIHL 107 (156)
T ss_dssp -----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHH
T ss_pred -----------------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC----------CCcHHHH
Confidence 7788899999999999999999999999999999999876 9999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 252 (489)
Q Consensus 204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~ 252 (489)
|+..|+.+++++|+++ ++++.+|.+|+||||+|+..|+.+++++|.++
T Consensus 108 A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 108 AVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999999999 99999999999999999999999999998764
No 66
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=7.2e-29 Score=227.40 Aligned_cols=160 Identities=28% Similarity=0.364 Sum_probs=146.4
Q ss_pred CchHHHHHHHhCcHHHHHHHHHc-CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe~-Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~ 123 (489)
+.++||.|+..|+.++|++||+. +.+++..|. .|+||||+|+..|+.+++++|++.+..
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------- 64 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD----------HGFSPLHWACREGRSAVVEMLIMRGAR---------- 64 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCC----------CCCCHHHHHHHcCcHHHHHHHHHcCCC----------
Confidence 37999999999999999999998 678999988 999999999999999999999987544
Q ss_pred cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203 (489)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 203 (489)
++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+
T Consensus 65 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~----------g~t~L~~ 111 (179)
T 3f6q_A 65 -----------------------INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHY 111 (179)
T ss_dssp -----------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHH
T ss_pred -----------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHH
Confidence 7788899999999999999999999999999999999876 9999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCC-CCCC
Q 011309 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DAVM 257 (489)
Q Consensus 204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~-~~~~ 257 (489)
|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|.+.+ +.+.
T Consensus 112 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 112 ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166 (179)
T ss_dssp HHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred HHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 99999999999999999999999999999999999999999888776644 4433
No 67
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=3.2e-29 Score=245.01 Aligned_cols=184 Identities=21% Similarity=0.246 Sum_probs=142.7
Q ss_pred CchHHHHHHHHc---CCHHHHHHHhhcCCCC-------c--ccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCC
Q 011309 9 ASGERLVSAARD---GDFVEAKMLLDCNPCL-------A--KYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76 (489)
Q Consensus 9 ~s~t~L~~Aa~~---G~~~~Vk~LL~~g~~l-------~--~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~ 76 (489)
...||||+|+.. |+.++|++||+.|++. + ....+..|+||||+|+..|+.++|++||++|++++..+.
T Consensus 53 ~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~ 132 (273)
T 2pnn_A 53 TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN 132 (273)
T ss_dssp TCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBC
T ss_pred CCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccc
Confidence 446899999987 9999999999998642 1 122333459999999999999999999999999999884
Q ss_pred CCC----cccccCCCCChHHHHHHHcCCHHHHHHHHH---ccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcc
Q 011309 77 CGQ----VTRADYLSGRTALHFAAVNGHVRCIRLVVA---DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK 149 (489)
Q Consensus 77 ~g~----i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~ 149 (489)
.+. .....+..|.||||+|+..|+.++|++|++ .+.. ++.
T Consensus 133 ~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad---------------------------------~~~ 179 (273)
T 2pnn_A 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD---------------------------------ISA 179 (273)
T ss_dssp SGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC---------------------------------TTC
T ss_pred ccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC---------------------------------cee
Confidence 110 001111269999999999999999999998 5443 788
Q ss_pred ccCCCccHHHHHHHcCC---------HHHHHHHHhcCCCccc-------ccccCCCccccCCCCCcHHHHHHHcCCHHHH
Q 011309 150 AADGGITALHMAALNGY---------FDCVQLLLDLHANVSA-------VTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213 (489)
Q Consensus 150 ~d~~G~TpLh~Aa~~g~---------~e~v~~LL~~Gadvn~-------~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eiv 213 (489)
+|..|.||||+|+..|+ .+++++|+++|++++. .+.. |.||||+|+..|+.++|
T Consensus 180 ~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~----------g~TpL~~A~~~g~~~iv 249 (273)
T 2pnn_A 180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK----------GLTPLALAASSGKIGVL 249 (273)
T ss_dssp CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT----------SCCHHHHHHHTTCHHHH
T ss_pred eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCC----------CCCHHHHHHHhChHHHH
Confidence 99999999999999998 8999999999999974 5654 99999999999999999
Q ss_pred HHHHHcCC-CCCccCCCCCcHHH
Q 011309 214 QVLLSRGA-SRMSLNCNGWLPLD 235 (489)
Q Consensus 214 k~LL~~Ga-dvn~~d~~G~TpL~ 235 (489)
++||++|| |+......+++|-+
T Consensus 250 ~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 250 AYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp HHHHHHHTC--------------
T ss_pred HHHHHCCCCCchhhhhhhhhccC
Confidence 99999999 88888888877654
No 68
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=3.8e-30 Score=247.68 Aligned_cols=185 Identities=20% Similarity=0.139 Sum_probs=136.3
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
+.||||.|++.|+.+.++.||++|.+++.. . .|.||||+|+..|+.++|++||++|+++|.+|. .|+
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~--~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~----------~g~ 71 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-P--LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND----------EGI 71 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT----------TSC
T ss_pred ccccCchhhhhhhHHHHHHHhccCCCcccC-c--hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------CCC
Confidence 468999999999999999999999998753 3 348999999999999999999999999999998 999
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.+.+ +|.+|..|.||||+|+..|+.++
T Consensus 72 t~L~~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpL~~A~~~~~~~~ 118 (239)
T 1ycs_B 72 TALHNAVCAGHTEIVKFLVQFGVN---------------------------------VNAADSDGWTPLHCAASCNNVQV 118 (239)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCC---------------------------------TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCccCCCCCCHHHHHHHcCCHHH
Confidence 999999999999999999987544 78899999999999999999999
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHH--HHcCCHHHHHHHHHcCCCCCcc---------CCCCCcHHHHHH
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA--ACGGNLKCCQVLLSRGASRMSL---------NCNGWLPLDVAR 238 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A--a~~g~~eivk~LL~~Gadvn~~---------d~~G~TpL~~A~ 238 (489)
|++|+++|++++..+.. .+.||||+| +..|+.+++++|+++|++++.. +..+.+++++|.
T Consensus 119 v~~Ll~~ga~~~~~~~~---------~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~ 189 (239)
T 1ycs_B 119 CKFLVESGAAVFAMTYS---------DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPM 189 (239)
T ss_dssp HHHHHHTTCCTTCCCSS---------SCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred HHHHHHcCCCcceecCC---------CCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccc
Confidence 99999999999998876 144999999 8889999999999999998876 566888888887
Q ss_pred HcCcHhHHHHhcC
Q 011309 239 MWGRHWLEPLLAP 251 (489)
Q Consensus 239 ~~g~~~i~~LL~~ 251 (489)
..|. ++.+|.+
T Consensus 190 ~~G~--~i~vl~~ 200 (239)
T 1ycs_B 190 KEGD--CMTIIHR 200 (239)
T ss_dssp CSSC--EEEECCC
T ss_pred cCCC--EEEEEEe
Confidence 7775 3344443
No 69
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.96 E-value=2.8e-28 Score=217.77 Aligned_cols=153 Identities=27% Similarity=0.354 Sum_probs=139.6
Q ss_pred chHHHHHHHHcCCHHHHHHHhhc-CCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309 10 SGERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG 88 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~-g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G 88 (489)
.+++||.|+..|++++|++|++. +.+++..+.. |+||||+ +..|+.+++++|+++|++++.+|. .|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~--g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~----------~g 68 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRF--GKTALQV-MMFGSTAIALELLKQGASPNVQDT----------SG 68 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTT--SCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT----------TS
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCC--CCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC----------CC
Confidence 46899999999999999999998 2255555544 4999999 999999999999999999999998 99
Q ss_pred ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309 89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168 (489)
Q Consensus 89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e 168 (489)
.||||+|+..|+.+++++|++.+.+ ++.+|..|.||||+|+..|+.+
T Consensus 69 ~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~ 115 (156)
T 1bd8_A 69 TSPVHDAARTGFLDTLKVLVEHGAD---------------------------------VNVPDGTGALPIHLAVQEGHTA 115 (156)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------SCCCCTTSCCHHHHHHHHTCHH
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCC---------------------------------CCCcCCCCCcHHHHHHHhChHH
Confidence 9999999999999999999987543 7788899999999999999999
Q ss_pred HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 011309 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 219 (489)
Q Consensus 169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 219 (489)
++++|+++ ++++..+.. |.||||+|+..|+.+++++|+++
T Consensus 116 ~v~~Ll~~-~~~~~~~~~----------g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 116 VVSFLAAE-SDLHRRDAR----------GLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHHHTT-SCTTCCCTT----------SCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHHHHhc-cCCCCcCCC----------CCCHHHHHHHcCcHHHHHHHHhh
Confidence 99999999 999998876 99999999999999999999874
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.3e-31 Score=257.09 Aligned_cols=179 Identities=21% Similarity=0.184 Sum_probs=146.7
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT 90 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T 90 (489)
.++||.|+..|++++|++|++.|++++..+..+ +||||+|+..|+.++|++|+++|+++|.+|. .|+|
T Consensus 22 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g--~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~----------~g~t 89 (229)
T 2vge_A 22 LVLLLDAALTGELEVVQQAVKEMNDPSQPNEEG--ITALHNAICGANYSIVDFLITAGANVNSPDS----------HGWT 89 (229)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCCC
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCCC
Confidence 468888999999999999998888887766555 8899999999999999999998999888887 8889
Q ss_pred HHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHH--HHcCCH
Q 011309 91 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMA--ALNGYF 167 (489)
Q Consensus 91 pLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~A--a~~g~~ 167 (489)
|||+|+..|+.+++++|++.+.. ++..+ ..|.||||+| +..|+.
T Consensus 90 pLh~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~~~~~g~tpL~~A~a~~~~~~ 136 (229)
T 2vge_A 90 PLHCAASCNDTVICMALVQHGAA---------------------------------IFATTLSDGATAFEKCDPYREGYA 136 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCC---------------------------------TTCCCSSTTCCTGGGCCTTSTTHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC---------------------------------cccccCCCCCCHHHHHHHHhcChH
Confidence 99999999999999998876543 56665 5888999988 888889
Q ss_pred HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCcHHHHHHHcCcHhH
Q 011309 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS--RMSLNCNGWLPLDVARMWGRHWL 245 (489)
Q Consensus 168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad--vn~~d~~G~TpL~~A~~~g~~~i 245 (489)
+++++|+++|++++..+.. |.||||.++..+ .+++|++.|++ ++.+|.+|+||||+|+..|+.++
T Consensus 137 ~~v~~Ll~~ga~~~~~~~~----------~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~ 203 (229)
T 2vge_A 137 DCATYLADVEQSMGLMNSG----------AVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY 203 (229)
T ss_dssp HHHHHHHHHHHHTTTSGGG----------EEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEE
T ss_pred HHHHHHHHcCCCcccccCC----------chHHHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcce
Confidence 9999999988888888765 778887655443 33677888888 67788889999999999998887
Q ss_pred HH
Q 011309 246 EP 247 (489)
Q Consensus 246 ~~ 247 (489)
++
T Consensus 204 v~ 205 (229)
T 2vge_A 204 VP 205 (229)
T ss_dssp EE
T ss_pred ee
Confidence 64
No 71
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=9.5e-28 Score=222.91 Aligned_cols=170 Identities=18% Similarity=0.154 Sum_probs=150.9
Q ss_pred chHHHHHHHhCcHHHHHHHHHcCC-CCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309 46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 124 (489)
Q Consensus 46 ~TpLh~Aa~~G~~eivk~LLe~Ga-d~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~ 124 (489)
.||||.|+..|+.++|+.||+.+. +++..|. .|.||||+|+..|+.+++++|++.+.+
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------- 64 (201)
T 3hra_A 6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDT----------EGNTPLNIAVHNNDIEIAKALIDRGAD----------- 64 (201)
T ss_dssp TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT----------TSCCHHHHHHHHTCHHHHHHHHHTTCC-----------
T ss_pred ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence 799999999999999999999875 9999998 899999999999999999999987654
Q ss_pred ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHH-hcCCCcccccccCCCccccCCCCCcHHHH
Q 011309 125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL-DLHANVSAVTFHYGTSMDLIGAGSTPLHF 203 (489)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL-~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 203 (489)
++..+..|.||||+|+..|+.+++++|+ ..+++++..+.. |.||||+
T Consensus 65 ----------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~----------g~t~L~~ 112 (201)
T 3hra_A 65 ----------------------INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY----------GGNALIP 112 (201)
T ss_dssp ----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTT----------SCCSHHH
T ss_pred ----------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCC----------CCcHHHH
Confidence 7788899999999999999999999999 667799988876 9999999
Q ss_pred HHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCc-----HhHHHHhcC-CCCCCCCCCCCCCCcchhhHH
Q 011309 204 AACGGNLKCCQVLLSRG-ASRMSLNCNGWLPLDVARMWGR-----HWLEPLLAP-SSDAVMPRFHPSNYLSLPLLS 272 (489)
Q Consensus 204 Aa~~g~~eivk~LL~~G-advn~~d~~G~TpL~~A~~~g~-----~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~ 272 (489)
|+..|+.+++++|+++| ++++.+|..|+||||+|+..++ .+++++|.+ +++++.. +..+.+|++.
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~----~~~g~t~l~~ 184 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK----DNSGRTAMDY 184 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC----CTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc----CCCCCCHHHH
Confidence 99999999999999999 9999999999999999999997 788777755 4555444 4556677543
No 72
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=4.9e-29 Score=241.18 Aligned_cols=173 Identities=24% Similarity=0.256 Sum_probs=145.9
Q ss_pred CchHHHHHHHHc---CCHHHHHHHhhcCCCCcccC---------CCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCC
Q 011309 9 ASGERLVSAARD---GDFVEAKMLLDCNPCLAKYS---------TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76 (489)
Q Consensus 9 ~s~t~L~~Aa~~---G~~~~Vk~LL~~g~~l~~~~---------~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~ 76 (489)
...||||+|+.. |+.++|++|++.|++++... .+..|.||||+|+..|+.++|++|+++|++++..+.
T Consensus 42 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~ 121 (256)
T 2etb_A 42 TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121 (256)
T ss_dssp TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccc
Confidence 345899999999 99999999999987765322 223459999999999999999999999999999886
Q ss_pred CCCcc---cccCCCCChHHHHHHHcCCHHHHHHHHH---ccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccc
Q 011309 77 CGQVT---RADYLSGRTALHFAAVNGHVRCIRLVVA---DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA 150 (489)
Q Consensus 77 ~g~i~---~~d~~~G~TpLh~Aa~~g~~~~vk~LL~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~ 150 (489)
.+... ...+..|+||||+|+..|+.+++++|++ .+.+ +|.+
T Consensus 122 ~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~---------------------------------~n~~ 168 (256)
T 2etb_A 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS---------------------------------LEAT 168 (256)
T ss_dssp SGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC---------------------------------TTCC
T ss_pred cccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC---------------------------------cCcc
Confidence 11000 0001129999999999999999999998 5543 7889
Q ss_pred cCCCccHHHHHHH--cCCHH-------HHHHHHhcCCCc-------ccccccCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 011309 151 ADGGITALHMAAL--NGYFD-------CVQLLLDLHANV-------SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 214 (489)
Q Consensus 151 d~~G~TpLh~Aa~--~g~~e-------~v~~LL~~Gadv-------n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk 214 (489)
|..|.||||+|+. .++.+ ++++|+++|+++ +..|.. |.||||+|+..|+.++|+
T Consensus 169 d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~----------g~tpL~~A~~~g~~~~v~ 238 (256)
T 2etb_A 169 DSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ----------GLTPLKLAAKEGKIEIFR 238 (256)
T ss_dssp CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTT----------SCCHHHHHHHTTCHHHHH
T ss_pred CCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCC----------CCCHHHHHHHhCCHHHHH
Confidence 9999999999999 88988 999999999999 777766 999999999999999999
Q ss_pred HHHHcCCCCC
Q 011309 215 VLLSRGASRM 224 (489)
Q Consensus 215 ~LL~~Gadvn 224 (489)
+||++|++..
T Consensus 239 ~Ll~~g~~~~ 248 (256)
T 2etb_A 239 HILQREFSGA 248 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhCCCCCC
Confidence 9999987653
No 73
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.95 E-value=8.4e-28 Score=228.14 Aligned_cols=200 Identities=20% Similarity=0.142 Sum_probs=168.8
Q ss_pred CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCC----cccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP----FEVM 120 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~----~~~~ 120 (489)
+.||||+|+..|+.+++++|++.|++++..+. .|.||||+|+..|+.+++++|++.+..... .+.+
T Consensus 9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t 78 (240)
T 3eu9_A 9 STWDIVKATQYGIYERCRELVEAGYDVRQPDK----------ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST 78 (240)
T ss_dssp GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC
T ss_pred cchHHHHHHHcCChHHHHHHHHcCCCcCCCCC----------CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC
Confidence 38999999999999999999999999999998 899999999999999999999998764442 3567
Q ss_pred ccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcH
Q 011309 121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP 200 (489)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~Tp 200 (489)
+++.+...+....+..+... +..++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~----------g~t~ 145 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKY---GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN----------GMTP 145 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCH
T ss_pred hhHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCC----------CCcH
Confidence 77888777776666655433 4457788899999999999999999999999999999988876 9999
Q ss_pred HHHHHHcCC-HHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhH
Q 011309 201 LHFAACGGN-LKCCQVLLSRGASRMSLNC-NGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLL 271 (489)
Q Consensus 201 Lh~Aa~~g~-~eivk~LL~~Gadvn~~d~-~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~ 271 (489)
||+|+..++ .+++++|++.|++++..+. .|+||||+|+..|+.+++++|.+. ++++.. +..+.+|+.
T Consensus 146 l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~l~ 215 (240)
T 3eu9_A 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ----NIKGESALD 215 (240)
T ss_dssp HHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCB----CTTSCBHHH
T ss_pred HHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCCHHH
Confidence 999996665 8999999999999999987 899999999999999988877664 444433 445566643
No 74
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=5e-29 Score=241.44 Aligned_cols=172 Identities=22% Similarity=0.231 Sum_probs=142.8
Q ss_pred chHHHHHHH---HcCCHHHHHHHhhcCCCC---------cccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCC
Q 011309 10 SGERLVSAA---RDGDFVEAKMLLDCNPCL---------AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYC 77 (489)
Q Consensus 10 s~t~L~~Aa---~~G~~~~Vk~LL~~g~~l---------~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~ 77 (489)
..||||+|+ +.|+.++|++|++.|++. .....+..|+||||+|+..|+.++|++||++|++++..+..
T Consensus 46 g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~ 125 (260)
T 3jxi_A 46 GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125 (260)
T ss_dssp CCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEE
T ss_pred CCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccc
Confidence 457999999 779999999999987542 22223334599999999999999999999999999998821
Q ss_pred CCcc----cccCCCCChHHHHHHHcCCHHHHHHHHH---ccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccc
Q 011309 78 GQVT----RADYLSGRTALHFAAVNGHVRCIRLVVA---DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA 150 (489)
Q Consensus 78 g~i~----~~d~~~G~TpLh~Aa~~g~~~~vk~LL~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~ 150 (489)
+... ...+..|+||||+|+..|+.++|++|++ .+.. ++.+
T Consensus 126 ~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~---------------------------------~~~~ 172 (260)
T 3jxi_A 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD---------------------------------LRRQ 172 (260)
T ss_dssp CCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC---------------------------------TTCC
T ss_pred cccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC---------------------------------Cccc
Confidence 0000 0001279999999999999999999998 5443 7889
Q ss_pred cCCCccHHHHHHHcCC---------HHHHHHHHhcCCCc-------ccccccCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 011309 151 ADGGITALHMAALNGY---------FDCVQLLLDLHANV-------SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 214 (489)
Q Consensus 151 d~~G~TpLh~Aa~~g~---------~e~v~~LL~~Gadv-------n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk 214 (489)
|..|.||||+|+..++ .+++++|+++|+++ +..+.. |.||||+|+..|+.++|+
T Consensus 173 d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~----------g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND----------GLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT----------SCCHHHHHHHTTCHHHHH
T ss_pred CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCC----------CCCHHHHHHHcCCHHHHH
Confidence 9999999999999888 79999999999999 556665 999999999999999999
Q ss_pred HHHHcCCCCC
Q 011309 215 VLLSRGASRM 224 (489)
Q Consensus 215 ~LL~~Gadvn 224 (489)
+||++|++..
T Consensus 243 ~Ll~~g~~~~ 252 (260)
T 3jxi_A 243 HIIRREIADA 252 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhCCCcc
Confidence 9999987753
No 75
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=2.2e-28 Score=246.70 Aligned_cols=188 Identities=12% Similarity=-0.020 Sum_probs=139.7
Q ss_pred CCHHHHHHHhhcCCCCcccCC------------CCCC---chHHHHHHHhCcHHHHHHHHHcCCCCCC-cCCCCCccccc
Q 011309 21 GDFVEAKMLLDCNPCLAKYST------------FGGL---NSPLHFAAAKGHNEIVALLLENGADVNS-RNYCGQVTRAD 84 (489)
Q Consensus 21 G~~~~Vk~LL~~g~~l~~~~~------------~~~g---~TpLh~Aa~~G~~eivk~LLe~Gad~n~-~d~~g~i~~~d 84 (489)
|++++|+.||++|.+.+.... .+.+ .+.+|+|+..+..+++++|++.|+++|. +|.
T Consensus 58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~-------- 129 (327)
T 1sw6_A 58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE-------- 129 (327)
T ss_dssp HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCST--------
T ss_pred chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCC--------
Confidence 999999999999876543110 0111 2346889999999999999999999999 887
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHc
Q 011309 85 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164 (489)
Q Consensus 85 ~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~ 164 (489)
.|+||||+|+..|+.++|++|++.++. ++.+|..|.||||+|+..
T Consensus 130 --~g~TpLh~Aa~~g~~~~v~~Ll~~Gad---------------------------------~n~~d~~g~TpLh~A~~~ 174 (327)
T 1sw6_A 130 --HGNTPLHWLTSIANLELVKHLVKHGSN---------------------------------RLYGDNMGESCLVKAVKS 174 (327)
T ss_dssp --TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTBCCTTCCCHHHHHHHS
T ss_pred --CCCcHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHh
Confidence 999999999999999999999987654 788999999999999999
Q ss_pred CC---HHHHHHHHhcC-CCcccccccCCCccccCCCCCcHHHHHHH----cCCHHHHHHHHHc-----------------
Q 011309 165 GY---FDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAAC----GGNLKCCQVLLSR----------------- 219 (489)
Q Consensus 165 g~---~e~v~~LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~----~g~~eivk~LL~~----------------- 219 (489)
|+ .++++.|++.+ ++++..+.. |+||||+|+. .|+.+++++|++.
T Consensus 175 g~~~~~~~~~~ll~~~~~~~~~~d~~----------g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~ 244 (327)
T 1sw6_A 175 VNNYDSGTFEALLDYLYPCLILEDSM----------NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244 (327)
T ss_dssp SHHHHTTCHHHHHHHHGGGGGEECTT----------CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred cccccHHHHHHHHHhhhccccCCCCC----------CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhh
Confidence 98 78888888887 788888876 9999999999 9999999999987
Q ss_pred ---CCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCCCCCCCCCCCCCCcchhhHH
Q 011309 220 ---GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLS 272 (489)
Q Consensus 220 ---Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~~~~~~~~~~~~~~~pl~~ 272 (489)
|++++.+|..|+||||+|+. +++|... +++.. +..+.+||+.
T Consensus 245 ~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~-~~n~~----d~~G~TpLh~ 289 (327)
T 1sw6_A 245 NEKESKPNDKNGERKDSILENLD------LKWIIAN-MLNAQ----DSNGDTCLNI 289 (327)
T ss_dssp ---------------CHHHHHCS------HHHHHHH-TTTCC----CTTSCCHHHH
T ss_pred hcccCCcccccccCCChhHHHHH------HHHHHHh-CCCCC----CCCCCCHHHH
Confidence 89999999999999999985 5555444 44443 4567788654
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=4.4e-28 Score=233.17 Aligned_cols=154 Identities=22% Similarity=0.247 Sum_probs=113.7
Q ss_pred CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 124 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~ 124 (489)
|.||||.|++.|+.++++.||++|++++.. . .|.||||+|+..|+.++|++|++.+.+
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~----------~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------- 62 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-P----------LPLALLLDSSLEGEFDLVQRIIYEVDD----------- 62 (239)
T ss_dssp -------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-----------
T ss_pred ccccCchhhhhhhHHHHHHHhccCCCcccC-c----------hhhHHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence 589999999999999999999999999865 3 799999999999999999999976543
Q ss_pred ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309 125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 204 (489)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A 204 (489)
+|.+|..|.||||+|+..|+.++|++|+++|++++..|.. |+||||+|
T Consensus 63 ----------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~----------g~tpL~~A 110 (239)
T 1ycs_B 63 ----------------------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD----------GWTPLHCA 110 (239)
T ss_dssp ----------------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT----------CCCHHHHH
T ss_pred ----------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHHH
Confidence 7888999999999999999999999999999999999976 99999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCC-cHHHHH--HHcCcHhHHHHhcCC
Q 011309 205 ACGGNLKCCQVLLSRGASRMSLNCNGW-LPLDVA--RMWGRHWLEPLLAPS 252 (489)
Q Consensus 205 a~~g~~eivk~LL~~Gadvn~~d~~G~-TpL~~A--~~~g~~~i~~LL~~~ 252 (489)
+..|+.++|++|+++|++++.+|..|. ||||+| +..|+.+++++|...
T Consensus 111 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~ 161 (239)
T 1ycs_B 111 ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV 161 (239)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence 999999999999999999999998887 999999 788999998888664
No 77
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=3.6e-27 Score=232.08 Aligned_cols=156 Identities=28% Similarity=0.312 Sum_probs=144.7
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCC-CCcccCCCCCCchHHHHHH-----HhCcHHHHHHHHHcCCCCCCcCCCCCcccc
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAA-----AKGHNEIVALLLENGADVNSRNYCGQVTRA 83 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~-~l~~~~~~~~g~TpLh~Aa-----~~G~~eivk~LLe~Gad~n~~d~~g~i~~~ 83 (489)
..||||+|+..|+.++|++|++.|+ +++..+..+ .||||+|+ ..|+.+++++|++.|++++..+.
T Consensus 111 g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g--~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~------- 181 (276)
T 4hbd_A 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAG--YSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQ------- 181 (276)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTS--CCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTT-------
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCC--CCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCC-------
Confidence 4579999999999999999999998 777766655 99999999 77999999999999999998887
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH
Q 011309 84 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163 (489)
Q Consensus 84 d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~ 163 (489)
.|+||||+|+..|+.++|++|++.+.+ +|.+|..|.||||+|+.
T Consensus 182 ---~g~tpLh~A~~~g~~~~v~~Ll~~gad---------------------------------~n~~d~~G~TpLh~A~~ 225 (276)
T 4hbd_A 182 ---AGQTALMLAVSHGRVDVVKALLACEAD---------------------------------VNVQDDDGSTALMCACE 225 (276)
T ss_dssp ---TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHH
T ss_pred ---CCCCHHHHHHHcCCHHHHHHHHhCCCC---------------------------------CCCCCCCCCCHHHHHHH
Confidence 899999999999999999999987654 78899999999999999
Q ss_pred cCCHHHHHHHHh-cCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 011309 164 NGYFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220 (489)
Q Consensus 164 ~g~~e~v~~LL~-~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G 220 (489)
.|+.++|++|++ .|++++..|.. |.||||+|+..|+.+++++|++++
T Consensus 226 ~g~~~iv~~Ll~~~gad~~~~d~~----------g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 226 HGHKEIAGLLLAVPSCDISLTDRD----------GSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HTCHHHHHHHHTSTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHhcCCCCCcCcCCC----------CCCHHHHHHHcCCHHHHHHHHhcc
Confidence 999999999999 89999999976 999999999999999999999874
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.9e-29 Score=239.10 Aligned_cols=164 Identities=22% Similarity=0.106 Sum_probs=139.4
Q ss_pred HHHHhhcCCCCcccCC-CCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHH
Q 011309 26 AKMLLDCNPCLAKYST-FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104 (489)
Q Consensus 26 Vk~LL~~g~~l~~~~~-~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~v 104 (489)
|+.||++|++.+.... ...+.||||+|+..|+.++|++|+++|++++..|. .|+||||+|+..|+.++|
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~----------~g~tpLh~A~~~g~~~~v 70 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE----------EGITALHNAICGANYSIV 70 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCT----------TSCCHHHHHHHTTCHHHH
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCC----------CCCCHHHHHHHcCCHHHH
Confidence 5778999888764433 33458999999999999999999999999999998 999999999999999999
Q ss_pred HHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCccccc
Q 011309 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT 184 (489)
Q Consensus 105 k~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~ 184 (489)
++|++.+.+ +|.+|..|.||||+|+..|+.++|++|+++|++++..+
T Consensus 71 ~~Ll~~ga~---------------------------------~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~ 117 (229)
T 2vge_A 71 DFLITAGAN---------------------------------VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117 (229)
T ss_dssp HHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred HHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence 999987544 78889999999999999999999999999999999986
Q ss_pred ccCCCccccCCCCCcHHHHH--HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 011309 185 FHYGTSMDLIGAGSTPLHFA--ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 241 (489)
Q Consensus 185 ~~~~~~~~~~~~G~TpLh~A--a~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g 241 (489)
.. .|.||||+| +..|+.+++++|+++|++++.+|..|.||++.++...
T Consensus 118 ~~---------~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~ 167 (229)
T 2vge_A 118 LS---------DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF 167 (229)
T ss_dssp SS---------TTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS
T ss_pred CC---------CCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc
Confidence 42 299999999 9999999999999999999999999999998655444
No 79
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=1.6e-27 Score=213.88 Aligned_cols=140 Identities=25% Similarity=0.251 Sum_probs=115.2
Q ss_pred CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123 (489)
Q Consensus 44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~ 123 (489)
.|.||||+|+..|+.++|++|+++|++++..|. .|+||||+|+ .|+.+++++|++.+..
T Consensus 11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~-~~~~~~v~~Ll~~g~~---------- 69 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVRALLEAGANPNAPNS----------YGRRPIQVMM-MGSARVAELLLLHGAE---------- 69 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS----------SSCCTTTSSC-TTCHHHHHHHHTTTCC----------
T ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------CCCCHHHHHH-cCCHHHHHHHHHcCCC----------
Confidence 348999999999999999999999999999998 8999999985 9999999999976543
Q ss_pred cccccCCchhhhhhhhhhhhhhhhccccCCCcc-HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHH
Q 011309 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT-ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 202 (489)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~T-pLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh 202 (489)
++.+|..|.| |||+|+..|+.++|++|+++|++++..+.. |.||||
T Consensus 70 -----------------------~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~----------g~tpl~ 116 (156)
T 1bi7_B 70 -----------------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW----------GRLPVD 116 (156)
T ss_dssp -----------------------CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT----------CCCHHH
T ss_pred -----------------------CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCC----------CCCHHH
Confidence 7888999999 999999999999999999999999999876 999999
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Q 011309 203 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237 (489)
Q Consensus 203 ~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A 237 (489)
+|+..|+.+++++|+++|++++.+|..|.||.+-+
T Consensus 117 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 117 LAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999999999999999999998754
No 80
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=7.4e-27 Score=204.61 Aligned_cols=134 Identities=25% Similarity=0.313 Sum_probs=122.9
Q ss_pred CCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccC
Q 011309 33 NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV 112 (489)
Q Consensus 33 g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~ 112 (489)
+++++..+..+ .||||+|+..|+.++|++|+++|++++.+|. .|+||||+|+. |+.+++++|++.+.
T Consensus 2 ~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~~-~~~~~v~~Ll~~g~ 68 (136)
T 1d9s_A 2 SPGIHMLGGSS--DAGLATAAARGQVETVRQLLEAGADPNALNR----------FGRRPIQVMMM-GSAQVAELLLLHGA 68 (136)
T ss_dssp CCCCSCCCCCC--SCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCCTTTTTSTT-SCHHHHHHHHHHTC
T ss_pred CCCccCCCCCC--ccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC----------CCCCHHHHHHc-CCHHHHHHHHHCCC
Confidence 34555555554 9999999999999999999999999999998 99999999999 99999999998754
Q ss_pred CCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCC-CccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcc
Q 011309 113 PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG-GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 191 (489)
Q Consensus 113 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~-G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~ 191 (489)
. ++.+|.. |.||||+|+..|+.+++++|+++|++++..+..
T Consensus 69 ~---------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~----- 110 (136)
T 1d9s_A 69 E---------------------------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW----- 110 (136)
T ss_dssp C---------------------------------SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSS-----
T ss_pred C---------------------------------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-----
Confidence 3 7788888 999999999999999999999999999999876
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309 192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222 (489)
Q Consensus 192 ~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 222 (489)
|.||||+|+..|+.+++++|+++|||
T Consensus 111 -----g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 111 -----GRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp -----SSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred -----CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999999986
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=4.2e-27 Score=218.70 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=133.0
Q ss_pred chHHHHHHHhCcHHHHHHHHHcCCCCCCcC-CCCCcccccCCCCChHHHHHHHcCCH----HHHHHHHHccCCCCCcccc
Q 011309 46 NSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQVTRADYLSGRTALHFAAVNGHV----RCIRLVVADFVPSVPFEVM 120 (489)
Q Consensus 46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d-~~g~i~~~d~~~G~TpLh~Aa~~g~~----~~vk~LL~~~~~~~~~~~~ 120 (489)
+++|+.|++.|+.+.++.|++.+. +..+ . .|+||||+|+.+|+. +++++|++.|++
T Consensus 7 ~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~----------~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad------- 67 (186)
T 3t8k_A 7 YRTVSAAAMLGTYEDFLELFEKGY--EDKESV----------LKSNILYDVLRNNNDEARYKISMFLINKGAD------- 67 (186)
T ss_dssp CSSHHHHHHHSCHHHHHHHHHHSS--SCHHHH----------HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-------
T ss_pred ccHHHHHHHcCCHHHHHHHHhcCc--cccccc----------CCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-------
Confidence 678999999999999999988764 4444 4 689999999999875 489999987655
Q ss_pred ccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC------HHHHHHHHhcCCCcccccccCCCccccC
Q 011309 121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY------FDCVQLLLDLHANVSAVTFHYGTSMDLI 194 (489)
Q Consensus 121 ~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~------~e~v~~LL~~Gadvn~~~~~~~~~~~~~ 194 (489)
+|.+|..|.||||+|+..|+ .++|++|+++|++++.+|..
T Consensus 68 --------------------------vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~-------- 113 (186)
T 3t8k_A 68 --------------------------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP-------- 113 (186)
T ss_dssp --------------------------SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGG--------
T ss_pred --------------------------CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCC--------
Confidence 88889999999999999887 68899999999999999987
Q ss_pred CCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309 195 GAGS-TPLHFAACGG-----NLKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 252 (489)
Q Consensus 195 ~~G~-TpLh~Aa~~g-----~~eivk~LL~-~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~ 252 (489)
|. ||||+|+..+ +.+++++|++ +|+|++.+|..|+||||+|++.|+.+++++|...
T Consensus 114 --g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 114 --YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp --GTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred --cCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 88 9999999954 4679999999 9999999999999999999999999999988653
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=3.3e-27 Score=219.44 Aligned_cols=160 Identities=13% Similarity=0.028 Sum_probs=139.9
Q ss_pred HHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcH----HHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309 12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQVTRADYLS 87 (489)
Q Consensus 12 t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~----eivk~LLe~Gad~n~~d~~g~i~~~d~~~ 87 (489)
++|+.||+.|+++.++.++..+.+. .+. ..|+||||+|+..|+. +++++||++|+++|.+|. .
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~-~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~----------~ 74 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYED--KES-VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK----------E 74 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSC--HHH-HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT----------T
T ss_pred cHHHHHHHcCCHHHHHHHHhcCccc--ccc-cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC----------C
Confidence 5799999999999999999987542 221 2248999999999975 599999999999999998 9
Q ss_pred CChHHHHHHHcCC------HHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCc-cHHHH
Q 011309 88 GRTALHFAAVNGH------VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGI-TALHM 160 (489)
Q Consensus 88 G~TpLh~Aa~~g~------~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~-TpLh~ 160 (489)
|+||||+|+..|+ .+++++|++.|++ +|.+|..|. ||||+
T Consensus 75 g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad---------------------------------in~~d~~g~ttpLh~ 121 (186)
T 3t8k_A 75 GTTLFFPLFQGGGNDITGTTELCKIFLEKGAD---------------------------------ITALYKPYKIVVFKN 121 (186)
T ss_dssp CCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC---------------------------------SSSCBGGGTBCTTGG
T ss_pred CCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC---------------------------------CCccCCCcCchHHHH
Confidence 9999999999997 6789999988765 899999999 99999
Q ss_pred HHHcC-----CHHHHHHHHh-cCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q 011309 161 AALNG-----YFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227 (489)
Q Consensus 161 Aa~~g-----~~e~v~~LL~-~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d 227 (489)
|+..+ +.+++++|++ +|++++.+|.. |.||||+|+..|+.++|++|+++..+.+.++
T Consensus 122 A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~----------G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW----------GLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp GGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTT----------SCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHHcCCChhhHHHHHHHHHHhcCCCCcccCCC----------CCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 99954 4579999999 99999999987 9999999999999999999998766555554
No 83
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=3.1e-25 Score=189.56 Aligned_cols=125 Identities=47% Similarity=0.710 Sum_probs=117.8
Q ss_pred CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 124 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~ 124 (489)
|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|++.+..
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------- 60 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----------NGRTPLHLAARNGHLEVVKLLLEAGAD----------- 60 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT----------TSCCHHHHHHHHTCHHHHHHHHHTTCC-----------
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC----------CCCcHHHHHHHcCcHHHHHHHHHcCCC-----------
Confidence 58999999999999999999999999999988 899999999999999999999986543
Q ss_pred ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309 125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 204 (489)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A 204 (489)
++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|
T Consensus 61 ----------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~l~~A 108 (126)
T 1n0r_A 61 ----------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLA 108 (126)
T ss_dssp ----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHH
T ss_pred ----------------------CcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCC----------CCCHHHHH
Confidence 6778889999999999999999999999999999998876 99999999
Q ss_pred HHcCCHHHHHHHHHcCCC
Q 011309 205 ACGGNLKCCQVLLSRGAS 222 (489)
Q Consensus 205 a~~g~~eivk~LL~~Gad 222 (489)
+..|+.+++++|+++|||
T Consensus 109 ~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 109 ARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHTTCHHHHHHHHHHTCC
T ss_pred HHcCcHHHHHHHHHcCCC
Confidence 999999999999999986
No 84
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=2e-27 Score=244.70 Aligned_cols=152 Identities=16% Similarity=0.023 Sum_probs=113.2
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCccc-CCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCC---CcCCCCCcccccCC
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKY-STFGGLNSPLHFAAAKGHNEIVALLLENGADVN---SRNYCGQVTRADYL 86 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~-~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n---~~d~~g~i~~~d~~ 86 (489)
.||||.|++.|++++|++|++.|+..... ..+..|.||||+|+..|+.++|++|+++|++++ ..+.
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~---------- 162 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE---------- 162 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH----------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC----------
Confidence 58999999999999999999998732111 111234899999999999999999999998743 3332
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcc--ccCCCccHHHHHH-H
Q 011309 87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK--AADGGITALHMAA-L 163 (489)
Q Consensus 87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~--~d~~G~TpLh~Aa-~ 163 (489)
+ .||||+|+..|+.++|++|++.+.. ++. .|..|.||||+|+ .
T Consensus 163 ~-~TpLh~Aa~~G~~eiv~~Ll~~ga~---------------------------------~~~~~~d~~g~TpL~~Aa~~ 208 (376)
T 2aja_A 163 N-YHAFRLAAENGHLHVLNRLCELAPT---------------------------------EATAMIQAENYYAFRWAAVG 208 (376)
T ss_dssp H-HHHHHHHHHTTCHHHHHHHHHSCGG---------------------------------GHHHHHHHHHHHHHHHHHST
T ss_pred C-CCHHHHHHHCCCHHHHHHHHHcCCc---------------------------------cchhccCCCCCCHHHHHHHH
Confidence 3 8999999999999999999987543 222 4455677777777 7
Q ss_pred cCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 011309 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223 (489)
Q Consensus 164 ~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadv 223 (489)
+|+.++|++|+++|++ |.||||+|+..|+.+++++|+++|+++
T Consensus 209 ~G~~eiv~~Ll~~ga~-----------------~~taL~~Aa~~g~~evv~lL~~~ga~~ 251 (376)
T 2aja_A 209 RGHHNVINFLLDCPVM-----------------LAYAEIHEFEYGEKYVNPFIARHVNRL 251 (376)
T ss_dssp TCCHHHHHHHTTSHHH-----------------HHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCc-----------------cchHHHHHHHCCCHHHHHHHHhcCccc
Confidence 7777777777775531 557777777777777777777766544
No 85
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=3.1e-25 Score=194.24 Aligned_cols=124 Identities=31% Similarity=0.444 Sum_probs=116.3
Q ss_pred CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123 (489)
Q Consensus 44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~ 123 (489)
.+.||||+|+..|+.++|++|+++|++++..|. .|+||||+|+..|+.+++++|++.+..
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------- 72 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDE----------YGLTPLYLATAHGHLEIVEVLLKNGAD---------- 72 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHHTCHHHHHHHHHTTCC----------
T ss_pred cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence 348999999999999999999999999999998 899999999999999999999987543
Q ss_pred cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203 (489)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 203 (489)
++..|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+
T Consensus 73 -----------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~tpl~~ 119 (136)
T 2jab_A 73 -----------------------VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF----------GKTAFDI 119 (136)
T ss_dssp -----------------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHH
T ss_pred -----------------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCC----------CCCHHHH
Confidence 7788999999999999999999999999999999999876 9999999
Q ss_pred HHHcCCHHHHHHHHHcC
Q 011309 204 AACGGNLKCCQVLLSRG 220 (489)
Q Consensus 204 Aa~~g~~eivk~LL~~G 220 (489)
|+..|+.+++++|+++|
T Consensus 120 A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 120 SIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTTCHHHHHHHHHC-
T ss_pred HHHCCCHHHHHHHHHcC
Confidence 99999999999999986
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=1.2e-25 Score=196.85 Aligned_cols=132 Identities=23% Similarity=0.224 Sum_probs=121.7
Q ss_pred CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhh
Q 011309 68 GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147 (489)
Q Consensus 68 Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 147 (489)
+++++..+. .|.||||+|+..|+.+++++|++.+.. +
T Consensus 2 ~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~ 38 (136)
T 1d9s_A 2 SPGIHMLGG----------SSDAGLATAAARGQVETVRQLLEAGAD---------------------------------P 38 (136)
T ss_dssp CCCCSCCCC----------CCSCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------T
T ss_pred CCCccCCCC----------CCccHHHHHHHcCCHHHHHHHHHcCCC---------------------------------c
Confidence 478888887 999999999999999999999987543 7
Q ss_pred ccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q 011309 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227 (489)
Q Consensus 148 n~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d 227 (489)
+.+|..|.||||+|+. |+.+++++|+++|++++..+.. .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus 39 ~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~---------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d 108 (136)
T 1d9s_A 39 NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPA---------TLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108 (136)
T ss_dssp TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTT---------TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCS
T ss_pred CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCC---------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence 7888999999999999 9999999999999999998853 27999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309 228 CNGWLPLDVARMWGRHWLEPLLAPS 252 (489)
Q Consensus 228 ~~G~TpL~~A~~~g~~~i~~LL~~~ 252 (489)
..|+||||+|+..++.+++++|.+.
T Consensus 109 ~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 109 AWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp SSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999888654
No 87
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2.3e-25 Score=199.65 Aligned_cols=140 Identities=19% Similarity=0.227 Sum_probs=114.3
Q ss_pred CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG 88 (489)
Q Consensus 9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G 88 (489)
...++||+|++.|++++|++|+++|++++..+..+ +||||+|+ .|+.++|++|+++|++++.+|. .|
T Consensus 11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~----------~g 77 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYG--RRPIQVMM-MGSARVAELLLLHGAEPNCADP----------AT 77 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSS--CCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT----------TT
T ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC----------CC
Confidence 34689999999999999999999999988877655 99999996 9999999999999999999998 89
Q ss_pred Ch-HHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309 89 RT-ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167 (489)
Q Consensus 89 ~T-pLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~ 167 (489)
+| |||+|+..|+.+++++|++.+.. ++.+|..|.||||+|+..|+.
T Consensus 78 ~ttpL~~A~~~~~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpl~~A~~~~~~ 124 (156)
T 1bi7_B 78 LTRPVHDAAREGFLDTLVVLHRAGAR---------------------------------LDVRDAWGRLPVDLAEELGHR 124 (156)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCC---------------------------------SSCCCTTCCCHHHHHHHHTCH
T ss_pred CcHHHHHHHHCCCHHHHHHHHHcCCC---------------------------------CcccCCCCCCHHHHHHHhCHH
Confidence 99 99999999999999999987544 788899999999999999999
Q ss_pred HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 204 (489)
Q Consensus 168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A 204 (489)
+++++|+++|++++..+.. |.||.+.+
T Consensus 125 ~~v~~Ll~~ga~~~~~~~~----------g~t~~~~~ 151 (156)
T 1bi7_B 125 DVARYLRAAAGGTRGSNHA----------RIDAAEGP 151 (156)
T ss_dssp HHHHHHSSCC---------------------------
T ss_pred HHHHHHHHcCCCCCccCcC----------cCcccccC
Confidence 9999999999999999876 78877643
No 88
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.92 E-value=2e-25 Score=195.28 Aligned_cols=133 Identities=31% Similarity=0.396 Sum_probs=116.9
Q ss_pred CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhh
Q 011309 68 GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147 (489)
Q Consensus 68 Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 147 (489)
|+|+ .+|. .|+||||+|+..|+.+++++|++.+.. +
T Consensus 1 G~d~-~~~~----------~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~ 36 (137)
T 3c5r_A 1 GIDP-FTNH----------RGETLLHIASIKGDIPSVEYLLQNGSD---------------------------------P 36 (137)
T ss_dssp ---C-CCCT----------TCCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------S
T ss_pred CCCC-CcCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------C
Confidence 5666 5555 899999999999999999999986543 6
Q ss_pred ccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q 011309 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227 (489)
Q Consensus 148 n~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d 227 (489)
+.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|
T Consensus 37 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 106 (137)
T 3c5r_A 37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106 (137)
T ss_dssp CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG----------GCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 788899999999999999999999999999999999877 9999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309 228 CNGWLPLDVARMWGRHWLEPLLAPSSD 254 (489)
Q Consensus 228 ~~G~TpL~~A~~~g~~~i~~LL~~~~~ 254 (489)
.+|+||||+|+..+..+++.+|.+...
T Consensus 107 ~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 107 IFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp TTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred CCCCCHHHHHhhccHHHHHhhcccccc
Confidence 999999999999999999888876543
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=1.3e-24 Score=190.34 Aligned_cols=124 Identities=31% Similarity=0.344 Sum_probs=116.6
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcC
Q 011309 86 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165 (489)
Q Consensus 86 ~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g 165 (489)
..|.||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~ 58 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGAD---------------------------------VNAKDEYGLTPLYLATAHG 58 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcC
Confidence 3788999999999999999999987543 7788899999999999999
Q ss_pred CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhH
Q 011309 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL 245 (489)
Q Consensus 166 ~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i 245 (489)
+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++
T Consensus 59 ~~~~v~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~ 128 (136)
T 2jab_A 59 HLEIVEVLLKNGADVNAVDAI----------GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128 (136)
T ss_dssp CHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHcCCCCCcCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHH
Confidence 999999999999999998876 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 011309 246 EPLLAPS 252 (489)
Q Consensus 246 ~~LL~~~ 252 (489)
+++|.+.
T Consensus 129 ~~~Ll~~ 135 (136)
T 2jab_A 129 AEILQKL 135 (136)
T ss_dssp HHHHHHC
T ss_pred HHHHHHc
Confidence 9998754
No 90
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=7.1e-26 Score=208.64 Aligned_cols=165 Identities=26% Similarity=0.302 Sum_probs=136.2
Q ss_pred HHHcCCHHHHHHHhhcCCCCccc---------CCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309 17 AARDGDFVEAKMLLDCNPCLAKY---------STFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLS 87 (489)
Q Consensus 17 Aa~~G~~~~Vk~LL~~g~~l~~~---------~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~ 87 (489)
|++.|..+.+++|++.+...... ..+..|.||||+|+..|+.+++++||+ |+++|.+|. .
T Consensus 7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~----------~ 75 (183)
T 3deo_A 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE----------N 75 (183)
T ss_dssp EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT----------T
T ss_pred HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC----------C
Confidence 45566666777777553322111 011234899999999999999999999 999999998 8
Q ss_pred CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHHHHcCC
Q 011309 88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGY 166 (489)
Q Consensus 88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~ 166 (489)
|+||||+|+..|+.+++++|++.+.. +|.++ ..|.||||+|+..|+
T Consensus 76 g~t~L~~A~~~~~~~~v~~Ll~~ga~---------------------------------~~~~~~~~g~tpL~~A~~~~~ 122 (183)
T 3deo_A 76 GRTALLFVAGLGSDKCVRLLAEAGAD---------------------------------LDHRDMRGGLTALHMAAGYVR 122 (183)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCSSSSCCHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCcCCCCCCCCHHHHHHhcCc
Confidence 99999999999999999999987644 66677 789999999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE 246 (489)
Q Consensus 167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~ 246 (489)
.+++++|+++|++++..+.. |.||||+|+..++. ..+.+||++|+..|+.+++
T Consensus 123 ~~~v~~Ll~~ga~~~~~d~~----------g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~ 175 (183)
T 3deo_A 123 PEVVEALVELGADIEVEDER----------GLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVI 175 (183)
T ss_dssp HHHHHHHHHHTCCTTCCCTT----------SCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCCCCC----------CCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHH
Confidence 99999999999999999876 99999999874322 4578999999999999999
Q ss_pred HHhcCC
Q 011309 247 PLLAPS 252 (489)
Q Consensus 247 ~LL~~~ 252 (489)
++|...
T Consensus 176 ~~L~~~ 181 (183)
T 3deo_A 176 NVLEGQ 181 (183)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 999654
No 91
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=1.5e-24 Score=216.69 Aligned_cols=139 Identities=27% Similarity=0.285 Sum_probs=122.3
Q ss_pred chHHHHHHHhCcHHHHHHHHHcCCCCCC------cCCCCCcccccCCCCChHHHHHHHc---CCHHHHHHHHHccCCCCC
Q 011309 46 NSPLHFAAAKGHNEIVALLLENGADVNS------RNYCGQVTRADYLSGRTALHFAAVN---GHVRCIRLVVADFVPSVP 116 (489)
Q Consensus 46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~------~d~~g~i~~~d~~~G~TpLh~Aa~~---g~~~~vk~LL~~~~~~~~ 116 (489)
.++|+.|+..|+.+.|+.|++.|++++. .+. .|+||||+|+.. |+.+++++|++.+.+
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~----------~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad--- 218 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQA----------PEELVLHLAVKVANQASLPLVDFIIQNGGH--- 218 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCS----------CEECHHHHHHHTCCTTTHHHHHHHHHHSSC---
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCC----------CCccHHHHHHHhcccCcHHHHHHHHhcCCC---
Confidence 4779999999999999999999999998 465 899999999997 899999999987654
Q ss_pred ccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCC
Q 011309 117 FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA 196 (489)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~ 196 (489)
+|.+|..|.||||+|+..|+.++|++|+++|++++..|..
T Consensus 219 ------------------------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~---------- 258 (301)
T 2b0o_E 219 ------------------------------LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA---------- 258 (301)
T ss_dssp ------------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTT----------
T ss_pred ------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------
Confidence 7888999999999999999999999999999999999976
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcH
Q 011309 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243 (489)
Q Consensus 197 G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~ 243 (489)
|.||||+|+..|+.+++++|+++|++ .|+||||+|+.+|+.
T Consensus 259 G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 259 GETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence 99999999999999999999999987 589999999999874
No 92
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=9.9e-24 Score=180.13 Aligned_cols=124 Identities=40% Similarity=0.558 Sum_probs=115.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309 87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166 (489)
Q Consensus 87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~ 166 (489)
+|+||||+|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---------------------------------~~~~~~~g~t~L~~A~~~~~ 47 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD---------------------------------VNAKDKNGRTPLHLAARNGH 47 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCC---------------------------------TTCCCTTSCCHHHHHHHHTC
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCC---------------------------------CCCcCCCCCcHHHHHHHcCc
Confidence 489999999999999999999976543 67778899999999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE 246 (489)
Q Consensus 167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~ 246 (489)
.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus 48 ~~~~~~Ll~~g~~~~~~~~~----------g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~ 117 (126)
T 1n0r_A 48 LEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117 (126)
T ss_dssp HHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCCCCcccCCC----------CCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHH
Confidence 99999999999999998876 99999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCC
Q 011309 247 PLLAPSS 253 (489)
Q Consensus 247 ~LL~~~~ 253 (489)
++|.+.+
T Consensus 118 ~~Ll~~G 124 (126)
T 1n0r_A 118 KLLLEAG 124 (126)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 8887543
No 93
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=2e-24 Score=204.62 Aligned_cols=133 Identities=29% Similarity=0.350 Sum_probs=95.5
Q ss_pred chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHc-cCCCCCcccccccc
Q 011309 46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQI 124 (489)
Q Consensus 46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~-~~~~~~~~~~~l~~ 124 (489)
.||||+|+..|+.++|++||+.|++++.+|. .|+||||+|+..|+.++|++|++. +..
T Consensus 74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----------- 132 (222)
T 3ehr_A 74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDK----------AGSTALYWACHGGHKDIVEMLFTQPNIE----------- 132 (222)
T ss_dssp SCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHTTSTTCC-----------
T ss_pred ccccccccccCcHHHHHHHHhCCCCccccCC----------CCCCHHHHHHHcCCHHHHHHHHcCCCCC-----------
Confidence 6888888888888888888888888888887 788888888888888888888864 322
Q ss_pred ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309 125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 204 (489)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A 204 (489)
++.+|..|.||||+|+..|+.++|++|+++|++++..+.. |.||||+|
T Consensus 133 ----------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A 180 (222)
T 3ehr_A 133 ----------------------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE----------KKLAFDMA 180 (222)
T ss_dssp ----------------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT----------SCCHHHHC
T ss_pred ----------------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC----------CCCHHHHh
Confidence 6777788888888888888888888888888888887766 88888888
Q ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCC
Q 011309 205 ACGGNLKCCQVLLSRGASRMSLNCNGW 231 (489)
Q Consensus 205 a~~g~~eivk~LL~~Gadvn~~d~~G~ 231 (489)
+..|+.++++.|++.|++.+..|.+|+
T Consensus 181 ~~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 181 TNAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp CSHHHHHHHC-----------------
T ss_pred cchhHHHHHHHHhccchhhhccchhhh
Confidence 888888888888888888777766554
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=2.6e-24 Score=188.20 Aligned_cols=126 Identities=31% Similarity=0.380 Sum_probs=112.5
Q ss_pred CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123 (489)
Q Consensus 44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~ 123 (489)
.|+||||+|+..|+.+++++|+++|++++.+|. .|+||||+|+..|+.+++++|++.+..
T Consensus 9 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------- 68 (137)
T 3c5r_A 9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH----------AGWTPLHEACNHGHLKVVELLLQHKAL---------- 68 (137)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCc----------
Confidence 449999999999999999999999999999998 899999999999999999999986543
Q ss_pred cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203 (489)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 203 (489)
++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+
T Consensus 69 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpl~~ 115 (137)
T 3c5r_A 69 -----------------------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF----------GLRPVDY 115 (137)
T ss_dssp -----------------------TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCGGGG
T ss_pred -----------------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHH
Confidence 7788889999999999999999999999999999999877 9999999
Q ss_pred HHHcCCHHHHHHHHHcCCC
Q 011309 204 AACGGNLKCCQVLLSRGAS 222 (489)
Q Consensus 204 Aa~~g~~eivk~LL~~Gad 222 (489)
|+..+..+++++|.+.+..
T Consensus 116 A~~~~~~~~l~~l~~~~~s 134 (137)
T 3c5r_A 116 TDDESMKSLLLLPEKNESS 134 (137)
T ss_dssp CCCHHHHHHHSCC------
T ss_pred HhhccHHHHHhhccccccC
Confidence 9999999999888776543
No 95
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.90 E-value=1.9e-25 Score=229.86 Aligned_cols=174 Identities=16% Similarity=0.092 Sum_probs=141.3
Q ss_pred HHHHHHH-cCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCC---CcCCCCCcccccCCCC
Q 011309 13 RLVSAAR-DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN---SRNYCGQVTRADYLSG 88 (489)
Q Consensus 13 ~L~~Aa~-~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n---~~d~~g~i~~~d~~~G 88 (489)
.|+.|.. .++.+.+++|+++|.+. +||||+|++.|+.++|++|+++|+... ..+. .|
T Consensus 68 ~~~~a~~~~~~~~~~~~l~~~g~~~---------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~----------~~ 128 (376)
T 2aja_A 68 CLYYAHYNRNAKQLWSDAHKKGIKS---------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA----------EN 128 (376)
T ss_dssp HHHHHHTTTTCTTHHHHHHHHTCCH---------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH----------HH
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCCc---------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhcc----------CC
Confidence 5666666 57888888888877542 699999999999999999999998332 2333 67
Q ss_pred ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309 89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168 (489)
Q Consensus 89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e 168 (489)
.||||+|+.+|+.++|++|++.+.+.. ...++..+ .||||+|+..|+.+
T Consensus 129 ~tpL~~Aa~~G~~eiv~~Ll~~gad~~----------------------------~~~i~~~~---~TpLh~Aa~~G~~e 177 (376)
T 2aja_A 129 YQAFRLAAENGHLHVLNRLCELAPTEI----------------------------MAMIQAEN---YHAFRLAAENGHLH 177 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCTTTH----------------------------HHHHSHHH---HHHHHHHHHTTCHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCcc----------------------------ccccCCCC---CCHHHHHHHCCCHH
Confidence 899999999999999999998753200 00122222 89999999999999
Q ss_pred HHHHHHhcCCCccc--ccccCCCccccCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhH
Q 011309 169 CVQLLLDLHANVSA--VTFHYGTSMDLIGAGSTPLHFAA-CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL 245 (489)
Q Consensus 169 ~v~~LL~~Gadvn~--~~~~~~~~~~~~~~G~TpLh~Aa-~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i 245 (489)
+|++|+++|++++. .+.. |.||||+|+ ..|+.++|++|+++|++ |+||||+|+..|+.++
T Consensus 178 iv~~Ll~~ga~~~~~~~d~~----------g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~ev 240 (376)
T 2aja_A 178 VLNRLCELAPTEATAMIQAE----------NYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYV 240 (376)
T ss_dssp HHHHHHHSCGGGHHHHHHHH----------HHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTH
T ss_pred HHHHHHHcCCccchhccCCC----------CCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHH
Confidence 99999999999887 7766 899999999 99999999999998753 8999999999999999
Q ss_pred HHHhcCCC
Q 011309 246 EPLLAPSS 253 (489)
Q Consensus 246 ~~LL~~~~ 253 (489)
+++|...+
T Consensus 241 v~lL~~~g 248 (376)
T 2aja_A 241 NPFIARHV 248 (376)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99997653
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.90 E-value=8.5e-24 Score=204.19 Aligned_cols=137 Identities=30% Similarity=0.352 Sum_probs=124.3
Q ss_pred CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 124 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~ 124 (489)
|.||||+|+..|+.++|++||+ |+++|.+|. .|+||||+|+..|+.++|++|++.+.+
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~----------~g~t~L~~A~~~g~~~~v~~Ll~~ga~----------- 102 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE-DRDVDAVDE----------NGRTALLFVAGLGSDKCVRLLAEAGAD----------- 102 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT----------TSCBHHHHHHHHTCHHHHHHHHHTTCC-----------
T ss_pred CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC----------CCCCHHHHHHHCCCHHHHHHHHHcCCC-----------
Confidence 4899999999999999999999 999999998 899999999999999999999987654
Q ss_pred ccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309 125 EGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203 (489)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~ 203 (489)
+|.++ ..|.||||+|+..|+.++|++|+++|++++..+.. |.||||+
T Consensus 103 ----------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~----------g~t~l~~ 150 (244)
T 3ui2_A 103 ----------------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER----------GLTALEL 150 (244)
T ss_dssp ----------------------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHH
T ss_pred ----------------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCcHHHH
Confidence 67777 78999999999999999999999999999999876 9999999
Q ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS 252 (489)
Q Consensus 204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~ 252 (489)
|+..+ .+..+.|||++|+..|+.+++++|...
T Consensus 151 A~~~~-----------------~~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 151 AREIL-----------------KTTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HHHHH-----------------TTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----------------hccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 98632 235789999999999999999998763
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=1.5e-23 Score=209.27 Aligned_cols=142 Identities=23% Similarity=0.304 Sum_probs=120.8
Q ss_pred chHHHHHHHHcCCHHHHHHHhhcCCCCccc----CCCCCCchHHHHHHHh---CcHHHHHHHHHcCCCCCCcCCCCCccc
Q 011309 10 SGERLVSAARDGDFVEAKMLLDCNPCLAKY----STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQVTR 82 (489)
Q Consensus 10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~----~~~~~g~TpLh~Aa~~---G~~eivk~LLe~Gad~n~~d~~g~i~~ 82 (489)
..++|+.|+..|+++.|+.|++.|++++.. ..+..|+||||+|+.. |+.++|++||++|+++|.+|.
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~------ 224 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA------ 224 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT------
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC------
Confidence 357899999999999999999999998763 1233459999999997 899999999999999999998
Q ss_pred ccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHH
Q 011309 83 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162 (489)
Q Consensus 83 ~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa 162 (489)
.|+||||+|+..|+.++|++|++.+++ ++.+|..|.||||+|+
T Consensus 225 ----~G~TpLh~A~~~g~~~~v~~Ll~~gad---------------------------------~~~~d~~G~TpL~~A~ 267 (301)
T 2b0o_E 225 ----DGNTALHYAALYNQPDCLKLLLKGRAL---------------------------------VGTVNEAGETALDIAR 267 (301)
T ss_dssp ----TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------CSCCCTTSCCHHHHHH
T ss_pred ----CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHH
Confidence 999999999999999999999987654 7888999999999999
Q ss_pred HcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCH
Q 011309 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210 (489)
Q Consensus 163 ~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ 210 (489)
..|+.+++++|+++|++ . |.||||+|+.+|+.
T Consensus 268 ~~~~~~iv~~Ll~~ga~------~----------g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 268 KKHHKECEELLEQAQAG------T----------FAFPLHVDYSWVIS 299 (301)
T ss_dssp HHTCHHHHHHHHHHHHH------T----------TSSCCC--------
T ss_pred HcCCHHHHHHHHHhcCC------C----------CCChhHHHHhcCCc
Confidence 99999999999999876 2 88999999998863
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=9.2e-23 Score=175.10 Aligned_cols=117 Identities=28% Similarity=0.400 Sum_probs=106.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309 87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166 (489)
Q Consensus 87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~ 166 (489)
.|.||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..|+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~---------------------------------~~~~~~~g~t~L~~A~~~~~ 52 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGED---------------------------------VNRTLEGGRKPLHYAADCGQ 52 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTSCCTTSSCHHHHHHHTTC
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCC---------------------------------cCccCCCCCcHHHHHHHcCC
Confidence 788999999999999999999986543 77888999999999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE 246 (489)
Q Consensus 167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~ 246 (489)
.+++++|+++|++++..+.. |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|. ...+.
T Consensus 53 ~~~v~~Ll~~g~~~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~ 119 (123)
T 3aaa_C 53 LEILEFLLLKGADINAPDKH----------HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD---NQAIK 119 (123)
T ss_dssp HHHHHHHHTTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC---CHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC---CHHHH
Confidence 99999999999999999876 999999999999999999999999999999999999999994 44444
Q ss_pred HHh
Q 011309 247 PLL 249 (489)
Q Consensus 247 ~LL 249 (489)
++|
T Consensus 120 ~ll 122 (123)
T 3aaa_C 120 ALL 122 (123)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=5.7e-23 Score=198.40 Aligned_cols=139 Identities=27% Similarity=0.278 Sum_probs=124.7
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcC-CCCCcccccCCCCC
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQVTRADYLSGR 89 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d-~~g~i~~~d~~~G~ 89 (489)
.||||.|++.|+.++|++|++ |.+++..+..+ +||||+|+..|+.++|++||++|+++|.++ . .|+
T Consensus 46 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~----------~g~ 112 (244)
T 3ui2_A 46 ETPWWTAARKADEQALSQLLE-DRDVDAVDENG--RTALLFVAGLGSDKCVRLLAEAGADLDHRDMR----------GGL 112 (244)
T ss_dssp HHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTS--CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS----------SCC
T ss_pred CCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCC--CCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCC----------CCC
Confidence 589999999999999999999 88888877655 999999999999999999999999999988 5 799
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.++|++|++.+.+ ++.+|..|.||||+|+..++.
T Consensus 113 t~L~~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~t~l~~A~~~~~~-- 157 (244)
T 3ui2_A 113 TALHMAAGYVRPEVVEALVELGAD---------------------------------IEVEDERGLTALELAREILKT-- 157 (244)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHHHTT--
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCcHHHHHHHHHhc--
Confidence 999999999999999999987654 788999999999999863221
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad 222 (489)
. .+.||||+|+..|+.+++++|++++.+
T Consensus 158 ---------------~----------~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 158 ---------------T----------PKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp ---------------C----------CCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ---------------c----------CCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 1 288999999999999999999997665
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=5.9e-23 Score=176.33 Aligned_cols=110 Identities=25% Similarity=0.339 Sum_probs=102.4
Q ss_pred CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 124 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~ 124 (489)
|.||||+|+..|+.++|++|+++|++++.+|. .|+||||+|+..|+.+++++|++.+.+
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------- 65 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE----------GGRKPLHYAADCGQLEILEFLLLKGAD----------- 65 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCT----------TSSCHHHHHHHTTCHHHHHHHHTTTCC-----------
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcCccCC----------CCCcHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence 48999999999999999999999999999998 899999999999999999999976543
Q ss_pred ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309 125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 204 (489)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A 204 (489)
++.+|..|.||||+|+..|+.+++++|+++|++++..+.. |.||||+|
T Consensus 66 ----------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A 113 (123)
T 3aaa_C 66 ----------------------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD----------GLTAFEAT 113 (123)
T ss_dssp ----------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHC
T ss_pred ----------------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHh
Confidence 7888999999999999999999999999999999999876 99999999
Q ss_pred HHc
Q 011309 205 ACG 207 (489)
Q Consensus 205 a~~ 207 (489)
...
T Consensus 114 ~~~ 116 (123)
T 3aaa_C 114 DNQ 116 (123)
T ss_dssp CCH
T ss_pred CCH
Confidence 433
No 101
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1.3e-22 Score=186.82 Aligned_cols=136 Identities=28% Similarity=0.297 Sum_probs=122.1
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcC-CCCCcccccCCCCC
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQVTRADYLSGR 89 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d-~~g~i~~~d~~~G~ 89 (489)
.||||.|++.|+.++|++|++ +.+++..+..+ +||||+|+..|+.++|++|+++|+++|.++ . .|+
T Consensus 45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g--~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------~g~ 111 (183)
T 3deo_A 45 ETPWWTAARKADEQALSQLLE-DRDVDAVDENG--RTALLFVAGLGSDKCVRLLAEAGADLDHRDMR----------GGL 111 (183)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS----------SSC
T ss_pred CCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC----------CCC
Confidence 589999999999999999999 88888776655 999999999999999999999999999988 5 899
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.+.. ++.+|..|.||||+|+..++.
T Consensus 112 tpL~~A~~~~~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpl~~A~~~~~~-- 156 (183)
T 3deo_A 112 TALHMAAGYVRPEVVEALVELGAD---------------------------------IEVEDERGLTALELAREILKT-- 156 (183)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCC---------------------------------TTCCCTTSCCHHHHHHHHHHT--
T ss_pred CHHHHHHhcCcHHHHHHHHHcCCC---------------------------------CcCCCCCCCCHHHHHHHhccC--
Confidence 999999999999999999987544 788899999999999975432
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 219 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~ 219 (489)
. .+.++|++|+..|..+++++|.++
T Consensus 157 ---------------~----------~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 ---------------T----------PKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp ---------------C----------CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------c----------ccccHHHHHHHcCHHHHHHHHHHh
Confidence 1 278999999999999999999865
No 102
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=2.4e-22 Score=214.10 Aligned_cols=137 Identities=27% Similarity=0.327 Sum_probs=116.4
Q ss_pred chHHHHHHHhCcHHHHHHHHHcCCCCCCc------CCCCCcccccCCCCChHHHHHHH---cCCHHHHHHHHHccCCCCC
Q 011309 46 NSPLHFAAAKGHNEIVALLLENGADVNSR------NYCGQVTRADYLSGRTALHFAAV---NGHVRCIRLVVADFVPSVP 116 (489)
Q Consensus 46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~------d~~g~i~~~d~~~G~TpLh~Aa~---~g~~~~vk~LL~~~~~~~~ 116 (489)
.+.||.|+..|+.++|+.||++|+++|.. |. .|+||||+|+. .|+.++|++|++.+++
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~----------~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~--- 199 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQA----------PEELVLHLAVKVANQASLPLVDFIIQNGGH--- 199 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCC----------SCBCHHHHHHHTCCTTTHHHHHHHHHHSCC---
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCccccc----------ccchHHHHHHHhcccccHHHHHHHHHcCCC---
Confidence 57899999999999999999999999977 54 89999999976 9999999999987654
Q ss_pred ccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCC
Q 011309 117 FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA 196 (489)
Q Consensus 117 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~ 196 (489)
+|.+|..|.||||+|+..|+.++|++||++|++++..|..
T Consensus 200 ------------------------------vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~---------- 239 (497)
T 3lvq_E 200 ------------------------------LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA---------- 239 (497)
T ss_dssp ------------------------------TTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTT----------
T ss_pred ------------------------------CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------
Confidence 8899999999999999999999999999999999999976
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 011309 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 241 (489)
Q Consensus 197 G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g 241 (489)
|.||||+|+..|+.+++++|+++|++++. +|+|++..++
T Consensus 240 g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~~~ 278 (497)
T 3lvq_E 240 GETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYSWV 278 (497)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTCC--------------------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecccc
Confidence 99999999999999999999999999987 4777766544
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=1.4e-22 Score=191.76 Aligned_cols=126 Identities=29% Similarity=0.253 Sum_probs=112.1
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309 87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166 (489)
Q Consensus 87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~ 166 (489)
.|.||||+|+..|+.++|++|++.+.. ++.+|..|.||||+|+..|+
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~ 118 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVG---------------------------------VNGLDKAGSTALYWACHGGH 118 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTC
T ss_pred ccccccccccccCcHHHHHHHHhCCCC---------------------------------ccccCCCCCCHHHHHHHcCC
Confidence 689999999999999999999986543 78889999999999999999
Q ss_pred HHHHHHHHhc-CCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhH
Q 011309 167 FDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL 245 (489)
Q Consensus 167 ~e~v~~LL~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i 245 (489)
.++|++|+++ |++++..+.. |.||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+..++.++
T Consensus 119 ~~~v~~Ll~~~g~~~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 188 (222)
T 3ehr_A 119 KDIVEMLFTQPNIELNQQNKL----------GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASL 188 (222)
T ss_dssp HHHHHHHTTSTTCCCCCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHH
T ss_pred HHHHHHHHcCCCCCccccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHH
Confidence 9999999999 9999999976 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCC
Q 011309 246 EPLLAPSSDA 255 (489)
Q Consensus 246 ~~LL~~~~~~ 255 (489)
+++|......
T Consensus 189 l~~l~~~~~~ 198 (222)
T 3ehr_A 189 LKKKQGTDAV 198 (222)
T ss_dssp HC--------
T ss_pred HHHHhccchh
Confidence 8887765554
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.87 E-value=3.2e-22 Score=205.22 Aligned_cols=144 Identities=24% Similarity=0.192 Sum_probs=113.0
Q ss_pred chHHHHHHHh-CcHHHHHHHHHcCCCCCCcC--CCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccc
Q 011309 46 NSPLHFAAAK-GHNEIVALLLENGADVNSRN--YCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT 122 (489)
Q Consensus 46 ~TpLh~Aa~~-G~~eivk~LLe~Gad~n~~d--~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l 122 (489)
.|+||+|+.. |++++|++||++|+++|..+ . .|.||||+|+..|+.++|++|++.+.+
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~----------~g~TpLh~Aa~~g~~~iv~~LL~~Gad--------- 260 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQ----------DNATPLIQATAANSLLACEFLLQNGAN--------- 260 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTT----------TCCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCCCcccccc----------CCCCHHHHHHHCCCHHHHHHHHHcCCC---------
Confidence 5899999999 99999999999999999887 5 899999999999999999999987544
Q ss_pred ccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHH
Q 011309 123 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 202 (489)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh 202 (489)
+|..|..|.||||+|+..|+.++|++|+++|++++..|.. |.||||
T Consensus 261 ------------------------vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~----------G~TpL~ 306 (368)
T 3jue_A 261 ------------------------VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE----------GRDPLT 306 (368)
T ss_dssp ------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHH
T ss_pred ------------------------CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCC----------CCCHHH
Confidence 7888999999999999999999999999999999999876 999999
Q ss_pred HHHHcCCHHHHHHHHHcCC---CCCccCCCCCcHHHHHHHcCc
Q 011309 203 FAACGGNLKCCQVLLSRGA---SRMSLNCNGWLPLDVARMWGR 242 (489)
Q Consensus 203 ~Aa~~g~~eivk~LL~~Ga---dvn~~d~~G~TpL~~A~~~g~ 242 (489)
+|+..|+.+++++|+.++. +....+..+.|+++++..+..
T Consensus 307 ~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~ 349 (368)
T 3jue_A 307 IAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL 349 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHC------------------------
T ss_pred HHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence 9999999999999998763 344556778899888876543
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=1.4e-21 Score=200.51 Aligned_cols=164 Identities=21% Similarity=0.125 Sum_probs=116.1
Q ss_pred hHHHHHHHHc-CCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309 11 GERLVSAARD-GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89 (489)
Q Consensus 11 ~t~L~~Aa~~-G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~ 89 (489)
+++||.|+.. |++++|++||+.|++++..+....|.||||+|+..|+.++|++||++|+++|..|. .|+
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~----------~G~ 269 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS----------AGR 269 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSC
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC----------CCC
Confidence 5799999999 99999999999999999877444559999999999999999999999999999998 999
Q ss_pred hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309 90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169 (489)
Q Consensus 90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~ 169 (489)
||||+|+..|+.+++++|++.++. ++..|..|.||||+|+..|+.++
T Consensus 270 TpLh~A~~~g~~~~v~~LL~~Gad---------------------------------~~~~d~~G~TpL~~A~~~g~~~i 316 (368)
T 3jue_A 270 GPLHHATILGHTGLACLFLKRGAD---------------------------------LGARDSEGRDPLTIAMETANADI 316 (368)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHHHHHHcCcHHHHHHHHHCcCC---------------------------------CCCcCCCCCCHHHHHHHCCCHHH
Confidence 999999999999999999987654 78889999999999999999999
Q ss_pred HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCCC
Q 011309 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN--LKCCQVLLSRGASRM 224 (489)
Q Consensus 170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~--~eivk~LL~~Gadvn 224 (489)
|++|+.++.......... ..+.|+|+++..... .+-.+.|+.++.+++
T Consensus 317 v~lLl~~~~~~~~~~~~~-------~~~~t~l~i~~~~~~~~~~~~ekl~r~~~~~~ 366 (368)
T 3jue_A 317 VTLLRLAKMREAEAAQGQ-------AGDETYLDIFRDFSLMASDDPEKLSRRSHDLH 366 (368)
T ss_dssp HHHHHHHHC------------------------------------------------
T ss_pred HHHHHHcCCCcccccccC-------CCCCCHHHHHHHHHhhcCCCHHHHHhcCCCcC
Confidence 999998874332211110 137888888766543 334555666655544
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=9.1e-21 Score=186.95 Aligned_cols=166 Identities=22% Similarity=0.239 Sum_probs=133.2
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCcc------------------------cCCCC-----CCchHHHHHHHhCcHHHH
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAK------------------------YSTFG-----GLNSPLHFAAAKGHNEIV 61 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~------------------------~~~~~-----~g~TpLh~Aa~~G~~eiv 61 (489)
.+.|+.+...|+..+.+++...-+.... ..... ...++|+.|+..|+.+.+
T Consensus 67 ~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~d~~~~ 146 (278)
T 1dcq_A 67 TSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGL 146 (278)
T ss_dssp GGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhcccHHH
Confidence 4678999999998776665433221110 00000 114689999999999999
Q ss_pred HHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHc---CCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhh
Q 011309 62 ALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVN---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC 138 (489)
Q Consensus 62 k~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~---g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 138 (489)
+.|++.|++++..-. ....+..|+||||+|+.. |+.+++++|++.+.+
T Consensus 147 ~~ll~~g~~~~~~~~----l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~------------------------- 197 (278)
T 1dcq_A 147 LQAYADGVDLTEKIP----LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN------------------------- 197 (278)
T ss_dssp HHHHHTTCCTTSBCC----CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-------------------------
T ss_pred HHHHHhhcchhhhcc----ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-------------------------
Confidence 999999999654310 000112899999999999 899999999987654
Q ss_pred hhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 011309 139 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218 (489)
Q Consensus 139 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~ 218 (489)
+|.+|..|.||||+|+..|+.++|++|+++|++++..|.. |.||||+|+..|+.+++++|++
T Consensus 198 --------in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~ 259 (278)
T 1dcq_A 198 --------LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES----------GETPLDIAKRLKHEHCEELLTQ 259 (278)
T ss_dssp --------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHH
T ss_pred --------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCC----------CCCHHHHHHHcCCHHHHHHHHH
Confidence 8889999999999999999999999999999999999977 9999999999999999999999
Q ss_pred cCCCC
Q 011309 219 RGASR 223 (489)
Q Consensus 219 ~Gadv 223 (489)
+|++.
T Consensus 260 ~ga~~ 264 (278)
T 1dcq_A 260 ALSGR 264 (278)
T ss_dssp HHTTC
T ss_pred cCCCC
Confidence 99864
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=2.4e-21 Score=206.35 Aligned_cols=129 Identities=23% Similarity=0.350 Sum_probs=115.2
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCccc----CCCCCCchHHHHHHH---hCcHHHHHHHHHcCCCCCCcCCCCCcccc
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKY----STFGGLNSPLHFAAA---KGHNEIVALLLENGADVNSRNYCGQVTRA 83 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~----~~~~~g~TpLh~Aa~---~G~~eivk~LLe~Gad~n~~d~~g~i~~~ 83 (489)
.+.||.|+..|+++.|+.||+.|++++.. ..+..|.||||+|+. .|+.++|++||++|+++|.+|.
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~------- 205 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA------- 205 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCS-------
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCC-------
Confidence 46899999999999999999999998765 123345999999976 9999999999999999999998
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH
Q 011309 84 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163 (489)
Q Consensus 84 d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~ 163 (489)
.|+||||+|+..|+.++|++|++.+++ ++.+|..|.||||+|+.
T Consensus 206 ---~g~TpLh~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpl~~A~~ 249 (497)
T 3lvq_E 206 ---DGNTALHYAALYNQPDCLKLLLKGRAL---------------------------------VGTVNEAGETALDIARK 249 (497)
T ss_dssp ---SSCCHHHHHTTTTCHHHHHHHHHTCCC---------------------------------CSCCCTTCCCHHHHHHH
T ss_pred ---CCCcHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHH
Confidence 999999999999999999999987655 88899999999999999
Q ss_pred cCCHHHHHHHHhcCCCccc
Q 011309 164 NGYFDCVQLLLDLHANVSA 182 (489)
Q Consensus 164 ~g~~e~v~~LL~~Gadvn~ 182 (489)
.|+.+++++|+++|++++.
T Consensus 250 ~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 250 KHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp TTCHHHHHHHHHTCC----
T ss_pred cCCHHHHHHHHHhCCCCCC
Confidence 9999999999999999865
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.85 E-value=1e-20 Score=186.60 Aligned_cols=128 Identities=20% Similarity=0.280 Sum_probs=115.1
Q ss_pred hHHHHHHHHcCCHHHHHHHhhcCCCCccc----CCCCCCchHHHHHHHh---CcHHHHHHHHHcCCCCCCcCCCCCcccc
Q 011309 11 GERLVSAARDGDFVEAKMLLDCNPCLAKY----STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQVTRA 83 (489)
Q Consensus 11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~----~~~~~g~TpLh~Aa~~---G~~eivk~LLe~Gad~n~~d~~g~i~~~ 83 (489)
.++|+.|+..|+++.|+.+++.|++++.. ..+..|+||||+|+.. |+.++|++|+++|+++|.+|.
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~------- 203 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG------- 203 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-------
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC-------
Confidence 35899999999999999999999986533 1233459999999999 899999999999999999998
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH
Q 011309 84 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163 (489)
Q Consensus 84 d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~ 163 (489)
.|+||||+|+..|+.++|++|++.+++ ++.+|..|.||||+|+.
T Consensus 204 ---~g~TpLh~A~~~g~~~~v~~Ll~~gad---------------------------------~~~~d~~g~tpL~~A~~ 247 (278)
T 1dcq_A 204 ---KGSTALHYCCLTDNAECLKLLLRGKAS---------------------------------IEIANESGETPLDIAKR 247 (278)
T ss_dssp ---TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHH
T ss_pred ---CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCccCCCCCHHHHHHH
Confidence 999999999999999999999987654 78899999999999999
Q ss_pred cCCHHHHHHHHhcCCCcc
Q 011309 164 NGYFDCVQLLLDLHANVS 181 (489)
Q Consensus 164 ~g~~e~v~~LL~~Gadvn 181 (489)
.|+.+++++|+++|++..
T Consensus 248 ~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 248 LKHEHCEELLTQALSGRF 265 (278)
T ss_dssp TTCHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCCCC
Confidence 999999999999988643
No 109
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.8e-20 Score=152.81 Aligned_cols=92 Identities=48% Similarity=0.715 Sum_probs=83.3
Q ss_pred CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309 45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI 124 (489)
Q Consensus 45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~ 124 (489)
|+||||+|+..|+.+++++|+++|+++|.+|. .|+||||+|+..|+.+++++|++.+.+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~----------~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------- 60 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----------NGRTPLHLAARNGHLEVVKLLLEAGAD----------- 60 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence 58999999999999999999999999999988 899999999999999999999987544
Q ss_pred ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCC
Q 011309 125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 179 (489)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gad 179 (489)
++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 61 ----------------------~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 61 ----------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp ----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ----------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 778888999999999999999999999999875
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=1.8e-20 Score=152.81 Aligned_cols=91 Identities=40% Similarity=0.533 Sum_probs=85.4
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc
Q 011309 153 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 232 (489)
Q Consensus 153 ~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~T 232 (489)
+|.||||+|+..|+.+++++|+++|++++..+.. |+||||+|+..|+.+++++|+++|++++.+|.+|+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t 70 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 70 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence 4899999999999999999999999999999876 999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcHhHHHHhcCCC
Q 011309 233 PLDVARMWGRHWLEPLLAPSS 253 (489)
Q Consensus 233 pL~~A~~~g~~~i~~LL~~~~ 253 (489)
|||+|+..|+.+++++|.+.+
T Consensus 71 ~l~~A~~~~~~~~~~~Ll~~g 91 (93)
T 1n0q_A 71 PLHLAARNGHLEVVKLLLEAG 91 (93)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 999999999999999887654
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.82 E-value=1.2e-20 Score=159.68 Aligned_cols=107 Identities=33% Similarity=0.387 Sum_probs=94.7
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHc
Q 011309 85 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164 (489)
Q Consensus 85 ~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~ 164 (489)
+.+|+||||+|+..|+.+++++|++.+.. ++..|..|.||||+|+..
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~d~~g~t~L~~A~~~ 52 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD---------------------------------VNARSKDGNTPLHLAAKN 52 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCC---------------------------------SSCCCSSSCCTTHHHHTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHc
Confidence 34899999999999999999999976433 777888999999999999
Q ss_pred CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHH
Q 011309 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 234 (489)
Q Consensus 165 g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL 234 (489)
|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.++..|++|-
T Consensus 53 ~~~~~~~~Ll~~g~~~~~~d~~----------g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 53 GHAEIVKLLLAKGADVNARSKD----------GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TCHHHHHHHTTTTCCTTCCCTT----------CCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CcHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9999999999999999988876 99999999999999999999999999999999999874
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=7.5e-20 Score=154.75 Aligned_cols=100 Identities=43% Similarity=0.564 Sum_probs=91.7
Q ss_pred CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309 44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123 (489)
Q Consensus 44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~ 123 (489)
.|+||||+|+..|+.+++++|+++|++++..|. .|.||||+|+..|+.+++++|++.+..
T Consensus 8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~----------~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------- 67 (115)
T 2l6b_A 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK----------DGNTPLHLAAKNGHAEIVKLLLAKGAD---------- 67 (115)
T ss_dssp SSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS----------SSCCTTHHHHTTTCHHHHHHHTTTTCC----------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------CCCCHHHHHHHcCcHHHHHHHHHcCCC----------
Confidence 348999999999999999999999999999988 899999999999999999999976543
Q ss_pred cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccc
Q 011309 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 186 (489)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~ 186 (489)
++.+|..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus 68 -----------------------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~ 107 (115)
T 2l6b_A 68 -----------------------VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG 107 (115)
T ss_dssp -----------------------TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCC
T ss_pred -----------------------CcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcc
Confidence 7788889999999999999999999999999999998876
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.77 E-value=1.3e-18 Score=146.57 Aligned_cols=94 Identities=31% Similarity=0.308 Sum_probs=86.1
Q ss_pred hccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 011309 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 226 (489)
Q Consensus 147 in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~ 226 (489)
....|.+|.|+||+|+..|+.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~----------g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~ 86 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN----------GSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence 6677889999999999999999999999999999999866 999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHcCcHhHHHHhc
Q 011309 227 NCNGWLPLDVARMWGRHWLEPLLA 250 (489)
Q Consensus 227 d~~G~TpL~~A~~~g~~~i~~LL~ 250 (489)
|..|+||||+|+..|+.+++++|.
T Consensus 87 d~~g~tpl~~A~~~~~~~~~~~L~ 110 (110)
T 2zgd_A 87 DKFGKTAFDISIDNGNEDLAEILQ 110 (110)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHC
T ss_pred ccCCCcHHHHHHHcCCHHHHHHhC
Confidence 999999999999999999999883
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=1.3e-16 Score=134.37 Aligned_cols=87 Identities=37% Similarity=0.559 Sum_probs=81.6
Q ss_pred CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG 88 (489)
Q Consensus 9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G 88 (489)
...++||+|+..|+.++|++|++.|++++..+..+ +||||+|+..|+.+++++|+++|++++.+|. .|
T Consensus 23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g--~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~----------~g 90 (110)
T 2zgd_A 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGADVXAQDK----------FG 90 (110)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TS
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCcccccc----------CC
Confidence 45689999999999999999999999998876655 9999999999999999999999999999998 99
Q ss_pred ChHHHHHHHcCCHHHHHHH
Q 011309 89 RTALHFAAVNGHVRCIRLV 107 (489)
Q Consensus 89 ~TpLh~Aa~~g~~~~vk~L 107 (489)
+||||+|+..|+.+++++|
T Consensus 91 ~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHcCCHHHHHHh
Confidence 9999999999999999987
No 115
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.20 E-value=4.2e-07 Score=68.57 Aligned_cols=54 Identities=26% Similarity=0.533 Sum_probs=43.6
Q ss_pred CCCcchhhhhhhhccccccc--CCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309 290 SDDADTCAVCLERACTVAAE--GCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 355 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v~~~--~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~ 355 (489)
..+...|.||+++..++.+. +|||. +|..|+..+-.. ...||+||+.|.+++++
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~------------~~~CPiCR~~i~~~i~i 61 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR------------NKPCPVCRQPIQMIVLT 61 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT------------TCCCTTTCCCCCEEEEE
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc------------CCcCCCcCcchhceEee
Confidence 34567899999999998876 99999 799999877421 12499999999988764
No 116
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=7.3e-07 Score=68.13 Aligned_cols=52 Identities=31% Similarity=0.749 Sum_probs=43.8
Q ss_pred CCCcchhhhhhhhcccccccCCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309 290 SDDADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 357 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v~~~~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~ 357 (489)
..+...|.||++...++.+.||||. +|..|+..+ ..||+||..|..++++-.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----------------~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----------------QQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----------------SSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----------------CCCCCCCcchhceEEeec
Confidence 4456789999999999999999999 899988732 249999999999987743
No 117
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.13 E-value=6.8e-07 Score=67.19 Aligned_cols=53 Identities=25% Similarity=0.515 Sum_probs=41.9
Q ss_pred CCcchhhhhhhhccccccc--CCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309 291 DDADTCAVCLERACTVAAE--GCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 355 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~--~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~ 355 (489)
.....|.+|+++..+..+. +|||. +|..|+..+-.. ...||+||+.|.+++++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~------------~~~CPiCR~~i~~~i~i 60 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA------------GASCPICKKEIQLVIKV 60 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT------------TCBCTTTCCBCCEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh------------CCcCCCcCchhhceEEE
Confidence 4457899999988776555 99998 799999877421 12599999999998875
No 118
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.86 E-value=3.8e-06 Score=65.17 Aligned_cols=48 Identities=27% Similarity=0.669 Sum_probs=40.9
Q ss_pred CcchhhhhhhhcccccccCCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309 292 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 355 (489)
Q Consensus 292 ~~~~C~iCle~~~~v~~~~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~ 355 (489)
+...|.||++...+....+|||. +|..|+..+ ..||+||..|.+++++
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i 71 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------------DKCPMCYTVITFKQKI 71 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----------------SBCTTTCCBCSEEEEC
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----------------ccCCCcCcCccCcEEE
Confidence 34679999999999999999999 899997554 3599999999998764
No 119
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.80 E-value=7.4e-06 Score=64.41 Aligned_cols=48 Identities=31% Similarity=0.643 Sum_probs=40.8
Q ss_pred cchhhhhhhhcccccccCCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309 293 ADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 356 (489)
Q Consensus 293 ~~~C~iCle~~~~v~~~~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~ 356 (489)
...|.+|++...++...+|||. +|..|+..+ ..||+||..|.+++++-
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----------------QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----------------SBCTTTCCBCCEEEECB
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----------------CcCCCCCchhhCeEEEE
Confidence 4579999999999999999999 888888543 15999999999997753
No 120
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=6.7e-06 Score=63.86 Aligned_cols=47 Identities=28% Similarity=0.664 Sum_probs=39.7
Q ss_pred cchhhhhhhhcccccccCCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309 293 ADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 355 (489)
Q Consensus 293 ~~~C~iCle~~~~v~~~~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~ 355 (489)
...|.||++...++...+|||. +|..|+-.+ ..||+||..|...+++
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i 72 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------------DKCPMCYTVITFKQKI 72 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----------------SBCTTTCCBCCCCCBC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----------------CCCccCCceecCcEEE
Confidence 4679999999999999999999 999998422 3599999999987654
No 121
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.67 E-value=3.6e-05 Score=59.91 Aligned_cols=56 Identities=25% Similarity=0.518 Sum_probs=41.8
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
.+...|.||++..-+....+|||.||..|+..+-.... ....+...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~-----~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAV-----TSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCS-----SSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcc-----cCCCCCCcCCCCCCcCCH
Confidence 45677999999998888889999999999876642211 111245679999998875
No 122
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.58 E-value=6.4e-05 Score=59.14 Aligned_cols=55 Identities=27% Similarity=0.606 Sum_probs=42.8
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
.+...|.||++..-+....+|+|.||..|...+-.... ...+...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR------NTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB------CTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc------CCCCCCCCCCCCCcCCH
Confidence 45678999999988877889999999999988865432 11234579999998864
No 123
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.57 E-value=2.4e-05 Score=59.13 Aligned_cols=54 Identities=30% Similarity=0.614 Sum_probs=42.6
Q ss_pred CCcchhhhhhhhccc-ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309 291 DDADTCAVCLERACT-VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 356 (489)
Q Consensus 291 ~~~~~C~iCle~~~~-v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~ 356 (489)
.....|.+|++..-+ +...+|||.||..|+..+-... ..||+||..|..++...
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN------------PTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS------------CSTTTTCCCCCCEECCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc------------CcCcCCChhhHhhhhcc
Confidence 345789999999877 5788999999999998875322 25999999999876543
No 124
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.56 E-value=2.9e-05 Score=56.02 Aligned_cols=49 Identities=27% Similarity=0.527 Sum_probs=38.8
Q ss_pred CCcchhhhhhhhccc----ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 291 DDADTCAVCLERACT----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 291 ~~~~~C~iCle~~~~----v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
.+...|.||++..-+ +...+|+|.||..|+..+-... ..||+||..|.+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~g 55 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG------------YRCPLCSGPSSG 55 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT------------CCCTTSCCSSCC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC------------CcCCCCCCcCCC
Confidence 356789999998754 7888999999999998875332 349999998753
No 125
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=2.7e-05 Score=59.61 Aligned_cols=51 Identities=27% Similarity=0.541 Sum_probs=41.1
Q ss_pred CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309 290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 352 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~ 352 (489)
..+...|.||++..-+....+|+|.||..|+..+.... ..||+||..|..-
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG------------KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS------------SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC------------CcCcCcCchhCHh
Confidence 34567899999999888888999999999998774211 3599999998754
No 126
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=5.6e-05 Score=58.15 Aligned_cols=56 Identities=27% Similarity=0.619 Sum_probs=42.3
Q ss_pred CCCcchhhhhhhhccc---ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309 290 SDDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 357 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~---v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~ 357 (489)
....+.|.||++..-. +...+|+|.||..|+..+-... ..||+||..|..+..+++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~~ 70 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR------------KVCPLCNMPVLQLAQLSG 70 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC------------SBCTTTCCBCSSCCSCCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC------------CcCCCcCcccccccccCC
Confidence 3456789999998643 3344899999999998875332 149999999988877665
No 127
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=0.0001 Score=57.97 Aligned_cols=56 Identities=25% Similarity=0.579 Sum_probs=42.8
Q ss_pred CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
..+...|.||++..-+....+|||.||..|...+-..... ..+...||+||..|..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~------~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSML------DKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHH------TTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhc------CCCCCcCCCCCCccCH
Confidence 3456789999999888888899999999999887644210 1124569999999875
No 128
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=4.8e-05 Score=57.43 Aligned_cols=50 Identities=22% Similarity=0.636 Sum_probs=39.6
Q ss_pred CCCcchhhhhhhhcccc-------cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 290 SDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v-------~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
..+...|.||++..-+. ...+|+|.||..|+..+-... ..||+||..|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC------------SSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC------------CCCCCCCCccCc
Confidence 45667899999987664 778999999999998885331 259999998764
No 129
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.45 E-value=8.5e-05 Score=56.27 Aligned_cols=52 Identities=29% Similarity=0.520 Sum_probs=39.6
Q ss_pred CCCcchhhhhhhhc---ccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309 290 SDDADTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 353 (489)
Q Consensus 290 ~~~~~~C~iCle~~---~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~ 353 (489)
......|.||++.. -.+...+|+|.||..|+..+-... ..||+||..|....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN------------KKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC------------CCCcCcCccccCcC
Confidence 45567899997765 456778999999999998875332 14999999887644
No 130
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=9.8e-05 Score=56.56 Aligned_cols=52 Identities=17% Similarity=0.393 Sum_probs=40.4
Q ss_pred CCCcchhhhhhhhcccccc-cCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309 290 SDDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 353 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v~~-~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~ 353 (489)
......|.||++..-+... .+|+|.||..|+..+-... ..||+||..|..-.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS------------NRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC------------SSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC------------CcCCCcCcccCccc
Confidence 3456789999999876655 4999999999998875331 35999999987643
No 131
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.40 E-value=7.3e-05 Score=57.25 Aligned_cols=52 Identities=25% Similarity=0.707 Sum_probs=40.7
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
.....|.||++..-+....+|||.||..|+..+-.. ..+...||+||..|..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~---------~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET---------SCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSS---------SCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHc---------CCCCCCCCCCCCcCCc
Confidence 456789999999888888899999999999888421 1134469999998753
No 132
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.38 E-value=6.8e-05 Score=54.03 Aligned_cols=48 Identities=33% Similarity=0.650 Sum_probs=35.7
Q ss_pred CCcchhhhhhhhccc---ccccC-CcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309 291 DDADTCAVCLERACT---VAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 350 (489)
Q Consensus 291 ~~~~~C~iCle~~~~---v~~~~-C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~ 350 (489)
.+...|.||++..-. +...+ |+|.||..|...+-.. ...||+||..|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~------------~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS------------HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT------------CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc------------CCcCcCCCCEeE
Confidence 455789999998766 55555 9999999999777311 235999998763
No 133
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.37 E-value=5.7e-05 Score=65.78 Aligned_cols=47 Identities=30% Similarity=0.643 Sum_probs=38.6
Q ss_pred chhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309 294 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 352 (489)
Q Consensus 294 ~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~ 352 (489)
..|.||++..-+....+|||.||..|+..+-.. ...||+||..|.+.
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~------------~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR------------KIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT------------CSBCTTTCCBCCCE
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHc------------CCcCCCCCCcCCCC
Confidence 359999999988888999999999999776321 23599999998765
No 134
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.35 E-value=6.1e-05 Score=57.32 Aligned_cols=50 Identities=22% Similarity=0.636 Sum_probs=39.7
Q ss_pred CCCcchhhhhhhhcccc-------cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 290 SDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v-------~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
..+...|.||++..-+. ...+|||.||..|+..+-... ..||+||..+..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC------------CCCCCCCCccCh
Confidence 45667899999987664 788999999999998885332 259999998764
No 135
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00012 Score=58.09 Aligned_cols=53 Identities=21% Similarity=0.532 Sum_probs=41.1
Q ss_pred CCCcchhhhhhhhccc----ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 290 SDDADTCAVCLERACT----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~----v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
..+...|.||++..-+ ....+|||.||..|+..+-... .+...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---------INGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---------SSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---------CCCcCCCCCCCcccc
Confidence 3456789999999877 7778999999999998886433 123569999987643
No 136
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.27 E-value=6.5e-05 Score=54.70 Aligned_cols=45 Identities=24% Similarity=0.499 Sum_probs=36.1
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 350 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~ 350 (489)
.+...|.+|++...+....+|||.||..|+.. ....||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---------------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---------------SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---------------SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---------------CCCCCCcCCcEee
Confidence 34567999999999989999999998888643 2346999998875
No 137
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.23 E-value=0.00021 Score=55.90 Aligned_cols=52 Identities=21% Similarity=0.456 Sum_probs=37.2
Q ss_pred CCCcchhhhhhhhc--ccccccC--CcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309 290 SDDADTCAVCLERA--CTVAAEG--CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 352 (489)
Q Consensus 290 ~~~~~~C~iCle~~--~~v~~~~--C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~ 352 (489)
..+...|.||+|.. -++...+ |||.||..|...+-.. +...||.||..+...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-----------~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-----------ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-----------SCSBCTTTCCBCSSC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-----------CCCCCCCCCCccCCC
Confidence 34556899999965 2334444 9999999999877421 134699999988764
No 138
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.23 E-value=8.5e-05 Score=55.14 Aligned_cols=48 Identities=23% Similarity=0.644 Sum_probs=37.8
Q ss_pred Ccchhhhhhhhcccc-------cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 292 DADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 292 ~~~~C~iCle~~~~v-------~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
+...|.||++..-+. ...+|||.||..|+..+-... ..||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC------------SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC------------CCCCCCCccCCc
Confidence 346799999887654 678999999999998885431 259999998875
No 139
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.21 E-value=5.7e-05 Score=57.43 Aligned_cols=51 Identities=22% Similarity=0.640 Sum_probs=40.7
Q ss_pred CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309 290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 353 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~ 353 (489)
..+...|.||++...+ ...+|+|.||..|+..+-. +...||+||..|....
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~------------~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD------------RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC------------CCSSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH------------CcCcCCCcCCcccCCC
Confidence 3456789999999988 7889999999999987631 2346999999987653
No 140
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.19 E-value=0.00022 Score=55.30 Aligned_cols=54 Identities=22% Similarity=0.481 Sum_probs=39.6
Q ss_pred CCCcchhhhhhhhcc---cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309 290 SDDADTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 355 (489)
Q Consensus 290 ~~~~~~C~iCle~~~---~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~ 355 (489)
......|.||++..- .+...+|+|.||..|+..+-... ..||+||..|..-...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH------------DSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT------------CSCTTTCCCCCCSCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC------------CcCcCcCCccCCcccC
Confidence 345678999987754 33556899999999998874211 2599999998775433
No 141
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.18 E-value=0.00012 Score=56.54 Aligned_cols=50 Identities=24% Similarity=0.561 Sum_probs=38.0
Q ss_pred CCCcchhhhhhhhccc---ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 290 SDDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~---v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
..+...|.||++..-. +...+|+|.||..|+..+-... ..||+||..|..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~------------~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN------------RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC------------SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC------------CcCcCcCCcCCC
Confidence 3456789999977543 4678899999999998885332 249999988754
No 142
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.18 E-value=0.00013 Score=58.79 Aligned_cols=50 Identities=20% Similarity=0.443 Sum_probs=38.2
Q ss_pred CCCcchhhhhhhhccc---ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 290 SDDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~---v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
..+...|.||++..-. +...+|+|.||..|+..+-.. ...||+||..|..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~------------~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK------------SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT------------TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc------------CCcCcCcCccCCC
Confidence 3456789999987655 677889999999999887521 1259999988753
No 143
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.00022 Score=55.90 Aligned_cols=49 Identities=22% Similarity=0.480 Sum_probs=40.1
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
.....|.||++..-+....+|||.||..|+..+-.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------------~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA------------TPRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH------------CSBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC------------CCcCCCcCccccc
Confidence 345679999999988888999999999999888532 2259999999863
No 144
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00022 Score=53.45 Aligned_cols=50 Identities=30% Similarity=0.662 Sum_probs=40.0
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
.....|.+|++..-+....+|||.+|..|+..+-. .+...||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----------~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS-----------SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT-----------TSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH-----------hCcCCCCCCCcCCCh
Confidence 44577999999998888899999999999988852 122359999998764
No 145
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.13 E-value=0.00028 Score=56.65 Aligned_cols=51 Identities=22% Similarity=0.483 Sum_probs=39.9
Q ss_pred CCcchhhhhhhhcccccccC-CcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 291 DDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~-C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
.+...|.||++..-+....+ |||.||..|+...-.... ...||+||..+..
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~----------~~~CP~Cr~~~~~ 62 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD----------EHTCPTCHQNDVS 62 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT----------TCCCTTTCCSSCC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC----------CCcCcCCCCcCCC
Confidence 45578999999988877888 999999999987754321 2359999998743
No 146
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.08 E-value=0.00018 Score=53.77 Aligned_cols=48 Identities=25% Similarity=0.557 Sum_probs=35.1
Q ss_pred cchhhhhhh-hcccc----cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 293 ADTCAVCLE-RACTV----AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 293 ~~~C~iCle-~~~~v----~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
...|.||++ ..-+. ...+|||.||..|+..+-.. +...||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----------GAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-----------TSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-----------CCCcCCCCCCcccc
Confidence 457999999 43333 35799999999999877421 12359999998864
No 147
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.08 E-value=0.00025 Score=54.59 Aligned_cols=51 Identities=22% Similarity=0.469 Sum_probs=40.1
Q ss_pred CCcchhhhhhhhcccccccC-CcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 291 DDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~-C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
.....|.||++..-+....+ |||.||..|+..+-... +...||+||..+.+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----------~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES----------DEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS----------SSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc----------CCCcCCCCCCcCCC
Confidence 45578999999998888888 99999999998886432 12359999996543
No 148
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.07 E-value=0.00023 Score=59.23 Aligned_cols=51 Identities=31% Similarity=0.697 Sum_probs=40.5
Q ss_pred cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309 293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 352 (489)
Q Consensus 293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~ 352 (489)
...|.||++..-+....+|||.||..|+..+-.... +...||+||..|..-
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK---------GPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS---------SSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC---------CCCCCcCCCCcCCHh
Confidence 457999999988888889999999999988864331 234699999988754
No 149
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.04 E-value=0.00015 Score=72.92 Aligned_cols=49 Identities=33% Similarity=0.710 Sum_probs=41.9
Q ss_pred CcchhhhhhhhcccccccCCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309 292 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 356 (489)
Q Consensus 292 ~~~~C~iCle~~~~v~~~~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~ 356 (489)
+...|.||++...++...+|||. +|..|+..+ ..||+||..|.+.+++.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----------------~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----------------RKCPICRGIIKGTVRTF 343 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----------------SBCTTTCCBCCEEEECC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----------------CcCCCCCCCccCeEEee
Confidence 34789999999999999999999 898887644 24999999999998774
No 150
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.02 E-value=0.00029 Score=71.44 Aligned_cols=53 Identities=26% Similarity=0.582 Sum_probs=43.4
Q ss_pred cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309 293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 356 (489)
Q Consensus 293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~ 356 (489)
...|.||++...++...+|||.+|..|+..+... +...||+||..|.....+.
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-----------~~~~CP~CR~~i~~~~~i~ 384 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-----------EGQGCPFCRCEIKGTEPIV 384 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-----------TCSBCTTTCCBCCEEEECS
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-----------CCCCCCCCCCccCCceeEe
Confidence 3689999999999999999999999999877532 1235999999998875543
No 151
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.91 E-value=0.00028 Score=57.77 Aligned_cols=50 Identities=20% Similarity=0.526 Sum_probs=40.2
Q ss_pred CCcchhhhhhhhcccccc-cCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 291 DDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~-~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
.+...|.||++..-+... .+|||.||..|+..+-.... ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-----------AQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-----------SBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-----------CCCCCCCCcCCH
Confidence 345679999999988777 99999999999988864431 359999998853
No 152
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.91 E-value=0.0004 Score=59.07 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=39.2
Q ss_pred cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
...|.||++..-+....+|||.||..|+...-.. +...||+||..+..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA-----------QVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-----------TCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH-----------CcCCCCCCCccCCC
Confidence 4579999999988888899999999999877531 12359999999876
No 153
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.83 E-value=0.00038 Score=53.96 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=43.9
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCCCCc
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV 360 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~~~ 360 (489)
.....|.+|++..-+....+|||.||..|+...-.. +...||+||..+..-...|...+
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-----------~~~~CP~C~~~~~~~~l~~n~~l 64 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-----------GHKTCPKSQETLLHAGLTPNYVL 64 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-----------TCCBCTTTCCBCSSCCCEECTTT
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-----------CcCCCCCCcCCCChhhCccCHHH
Confidence 345789999998888888899999999999888521 13469999998875443444333
No 154
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.80 E-value=0.00044 Score=56.32 Aligned_cols=48 Identities=25% Similarity=0.557 Sum_probs=37.9
Q ss_pred Ccchhhhhhhhccccccc-CCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309 292 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS 351 (489)
Q Consensus 292 ~~~~C~iCle~~~~v~~~-~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~ 351 (489)
....|.||++..-+.... +|||.||..|+...-.. ...||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~------------~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY------------KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT------------CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC------------CCCCCCCCCcCCh
Confidence 346799999998776655 89999999999887531 1359999998875
No 155
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.72 E-value=0.00058 Score=60.27 Aligned_cols=49 Identities=24% Similarity=0.571 Sum_probs=40.3
Q ss_pred cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309 293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 352 (489)
Q Consensus 293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~ 352 (489)
...|.||++..-+....+|||.||..|+...-.. +...||+||..|..-
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA-----------QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-----------TCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh-----------CCCcCCCCCccCCCC
Confidence 3579999999988888999999999999888642 123599999998765
No 156
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.71 E-value=0.00038 Score=58.34 Aligned_cols=51 Identities=27% Similarity=0.651 Sum_probs=39.9
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 352 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~ 352 (489)
.+...|.||++..-+....+|||.||..|+..+-.. +...||+||..|..+
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~~ 63 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-----------ASLCCPFCRRRVSSW 63 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT-----------TTSBCTTTCCBCHHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH-----------CcCCCCCCCcccCcc
Confidence 345679999999888888899999999998665311 234699999999864
No 157
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.62 E-value=0.00074 Score=56.39 Aligned_cols=54 Identities=24% Similarity=0.581 Sum_probs=38.9
Q ss_pred Ccchhhhhhhhccc------------------ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309 292 DADTCAVCLERACT------------------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 352 (489)
Q Consensus 292 ~~~~C~iCle~~~~------------------v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~ 352 (489)
..+.|.||++.... +...+|+|.||..|+..+-...++ .....||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~-------~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-------DGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-------SSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC-------CCCCcCCCCCCccCCC
Confidence 34689999998643 237899999999999988643221 1234699999877654
No 158
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.59 E-value=0.00072 Score=56.01 Aligned_cols=50 Identities=20% Similarity=0.482 Sum_probs=39.4
Q ss_pred CCcchhhhhhhhccccccc-CCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309 291 DDADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 352 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~-~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~ 352 (489)
.....|.||++..-+.... +|||.||..|+...-... ..||+||..|..-
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS------------KYCPICDVQVHKT 63 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC------------SBCTTTCCBSCSS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC------------CcCcCCCcccccc
Confidence 3456799999998777665 999999999998875221 3599999988753
No 159
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.56 E-value=0.0018 Score=46.73 Aligned_cols=47 Identities=28% Similarity=0.653 Sum_probs=36.5
Q ss_pred CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCc
Q 011309 290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC 345 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~C 345 (489)
......|.||++..-+....+|||.||..|+..+-... .+...||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL---------ERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS---------CCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc---------CCCCCCCCC
Confidence 34567899999999888889999999999998884221 123469998
No 160
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.43 E-value=0.0013 Score=55.41 Aligned_cols=58 Identities=17% Similarity=0.446 Sum_probs=44.0
Q ss_pred CCCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309 289 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 357 (489)
Q Consensus 289 ~~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~ 357 (489)
.......|.||++..-+....+|||.||..|+..+-.... ..||+||..|..-...|.
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~~~~~~~ 71 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-----------HKCPVDNEILLENQLFPD 71 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEEC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC-----------CCCCCCCCCcCHHhcccC
Confidence 3455678999999988877889999999999988754332 159999999876443343
No 161
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.001 Score=52.20 Aligned_cols=47 Identities=32% Similarity=0.676 Sum_probs=32.4
Q ss_pred Ccchhhhhhhhccc--------------c-cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309 292 DADTCAVCLERACT--------------V-AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 350 (489)
Q Consensus 292 ~~~~C~iCle~~~~--------------v-~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~ 350 (489)
..+.|.||++..-. + ...+|+|.|+..|+...-... ..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------------~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN------------NRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC------------CBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC------------CCCCCcCCCcc
Confidence 44567777766532 2 344699999999998884221 25999998764
No 162
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.42 E-value=0.00092 Score=59.81 Aligned_cols=51 Identities=27% Similarity=0.688 Sum_probs=39.8
Q ss_pred Ccchhhhhhhhccccccc-CCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309 292 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 353 (489)
Q Consensus 292 ~~~~C~iCle~~~~v~~~-~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~ 353 (489)
....|.||++..-+.... +|||.||..|+..+-.. +...||+||..|....
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~~~ 104 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-----------GNKECPTCRKKLVSKR 104 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-----------TCCBCTTTCCBCCSGG
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-----------CcCCCCCCCCcCCCcc
Confidence 345799999998876655 99999999999888632 1235999999986543
No 163
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.38 E-value=0.0018 Score=55.18 Aligned_cols=50 Identities=22% Similarity=0.611 Sum_probs=39.3
Q ss_pred CCcchhhhhhhhcccc-------cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309 291 DDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 352 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v-------~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~ 352 (489)
.+...|.||++..-+. ...+|||.||..|+..+-... ..||+||..+..-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC------------SBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC------------CCCCCCCCcCccc
Confidence 4567899999987665 788999999999998885221 2599999988643
No 164
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.38 E-value=0.0016 Score=48.18 Aligned_cols=46 Identities=28% Similarity=0.783 Sum_probs=36.3
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCc
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC 345 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~C 345 (489)
.....|.||++..-+....+|||.||..|+..+-.... +...||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC---------GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS---------SCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC---------CCCcCcCC
Confidence 45678999999998888889999999999988864311 23359998
No 165
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.24 E-value=0.0012 Score=55.55 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=37.0
Q ss_pred Ccchhhhhhhhccccccc-CCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309 292 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 350 (489)
Q Consensus 292 ~~~~C~iCle~~~~v~~~-~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~ 350 (489)
....|.||++..-+.... +|||.||..|+...-. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--------------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--------------TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--------------TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--------------CCCcCCCCcCc
Confidence 346799999999888887 9999999999977631 35999999874
No 166
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.09 E-value=0.0022 Score=53.71 Aligned_cols=50 Identities=22% Similarity=0.495 Sum_probs=40.1
Q ss_pred cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309 293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 353 (489)
Q Consensus 293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~ 353 (489)
...|.||++..-+....+|||.||..|+...-... ...||+||..|..-.
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVM-----------GSYCPSCRYPCFPTD 72 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-----------CSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-----------cCcCCCCCCCCCHhh
Confidence 45799999999888888999999999998875332 125999999987643
No 167
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=95.59 E-value=0.0037 Score=53.14 Aligned_cols=51 Identities=22% Similarity=0.602 Sum_probs=39.5
Q ss_pred CCCcchhhhhhhhcccc-------cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309 290 SDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF 352 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v-------~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~ 352 (489)
..+...|.+|++..-.. ...+|||.||..|+..+-... ..||+||..|..-
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC------------SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC------------CCCCCCCCcCChh
Confidence 35567799999887654 678999999999998875332 2599999988753
No 168
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.58 E-value=0.0021 Score=56.00 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=39.2
Q ss_pred CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309 290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 349 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I 349 (489)
....-.|.||++-..+....+|||.||..|+..+-.. +...||+||..|
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~-----------~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS-----------GPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG-----------SCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc-----------CCCCCCCCCCcc
Confidence 3456789999999888888899999999999887521 123599999976
No 169
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=95.47 E-value=0.0047 Score=51.08 Aligned_cols=46 Identities=30% Similarity=0.507 Sum_probs=33.7
Q ss_pred Ccchhhhhhhhcc------------------cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309 292 DADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 349 (489)
Q Consensus 292 ~~~~C~iCle~~~------------------~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I 349 (489)
..+.|.||++..- .+...+|+|.|+..|+...-.. ...||+||...
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------------~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------------RQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT------------CSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc------------CCcCcCCCCcc
Confidence 4577888876543 3456899999999999888422 12599999874
No 170
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.00 E-value=0.0044 Score=52.14 Aligned_cols=47 Identities=30% Similarity=0.469 Sum_probs=1.5
Q ss_pred CCcchhhhhhhhcc------------------cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309 291 DDADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 349 (489)
Q Consensus 291 ~~~~~C~iCle~~~------------------~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I 349 (489)
...+.|.||++..- .+...+|+|.|+..|+...-.. ...||+||...
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~------------~~~CP~Cr~~~ 110 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------------RQVCPLDNREW 110 (117)
T ss_dssp CCC--------------------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc------------CCcCCCCCCee
Confidence 34588999987753 3344689999999998776422 12499999874
No 171
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=94.86 E-value=0.0083 Score=47.37 Aligned_cols=55 Identities=9% Similarity=-0.136 Sum_probs=42.8
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 357 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~ 357 (489)
...-.|.+|++-.-+....+|||.+|..|+...-... ..||+||..+..-.-.|.
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~------------~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS------------PTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCCGGGCEEC
T ss_pred chheECcccCchhcCCeECCCCCEECHHHHHHHHhcC------------CCCCCCcCCCChHhcchH
Confidence 4567899999999999989999999999998885421 249999988765443343
No 172
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.76 E-value=0.015 Score=45.47 Aligned_cols=58 Identities=22% Similarity=0.461 Sum_probs=42.3
Q ss_pred CCCcchhhhhhhhc--ccccccCCc-----chhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309 290 SDDADTCAVCLERA--CTVAAEGCR-----HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 357 (489)
Q Consensus 290 ~~~~~~C~iCle~~--~~v~~~~C~-----H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~ 357 (489)
..+.+.|.||++.. -.....+|. |.|-..|+..+-.... ...||+||..+.--.++++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~----------~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD----------TRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC----------CSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC----------CCCCCCCCCeeecCcccCC
Confidence 45668899999764 233467996 9999999998875542 2359999999876555554
No 173
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=94.75 E-value=0.013 Score=52.35 Aligned_cols=57 Identities=18% Similarity=0.453 Sum_probs=43.1
Q ss_pred CCCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309 289 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP 356 (489)
Q Consensus 289 ~~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~ 356 (489)
...+.-.|.||++-.-+....+|||.||..|...+-.... ..||+||..|..-...|
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-----------HKCPVDNEILLENQLFP 70 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC-----------CCCCCCccCcchhhhhh
Confidence 3455678999999988877889999999999988753321 15999999887643333
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.69 E-value=0.0059 Score=58.84 Aligned_cols=59 Identities=8% Similarity=-0.077 Sum_probs=44.5
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCCCCc
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV 360 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~~~ 360 (489)
...-.|.||++-.-+....+|||.+|..|+...-... ...||+||..+..-.-+|...+
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~-----------~~~cP~~~~~~~~~~l~~n~~l 264 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-----------GHFNPVTRSPLTQEQLIPNLAM 264 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-----------CSSCTTTCCCCCGGGCEECHHH
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC-----------CCCCcCCCCCCchhcCcccHHH
Confidence 3456799999999999999999999999998775332 1139999999875544454333
No 175
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=94.35 E-value=0.007 Score=49.42 Aligned_cols=55 Identities=11% Similarity=-0.118 Sum_probs=42.4
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 357 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~ 357 (489)
...-.|.+|++-.-+....+|||.+|..|+...-.. ...||+||..+..-.-.|.
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~------------~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN------------SPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS------------CSBCSSSCCBCCTTSSEEC
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc------------CCCCCCCCCCCChhhceEC
Confidence 445789999999999999999999999999887421 1359999998765433333
No 176
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.27 E-value=0.0087 Score=48.04 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=36.1
Q ss_pred Ccchhhhhhhhcccc---cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCC--cccc
Q 011309 292 DADTCAVCLERACTV---AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHG 348 (489)
Q Consensus 292 ~~~~C~iCle~~~~v---~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~--CR~~ 348 (489)
+...|.||++..-.. ...+|+|.||..|....-..... .+....+.||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~----~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK----EGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH----HCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhh----cCCcccccCccccCCCC
Confidence 456799999876443 23489999999998777643310 11113467999 9987
No 177
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=94.05 E-value=0.01 Score=48.31 Aligned_cols=55 Identities=9% Similarity=-0.069 Sum_probs=42.6
Q ss_pred CCcchhhhhhhhcccccccCCc-chhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309 291 DDADTCAVCLERACTVAAEGCR-HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG 357 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~-H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~ 357 (489)
...-.|.||++-.-+....+|| |.+|..|+...-.. ...||+||..+..-.-+|.
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~------------~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS------------DQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT------------SCBCTTTCSBCCTTTSEEC
T ss_pred cHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh------------CCCCCCCCCCCChhhceEc
Confidence 3456799999999999999999 99999999877421 1259999998875444444
No 178
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=91.84 E-value=0.033 Score=50.36 Aligned_cols=59 Identities=10% Similarity=-0.042 Sum_probs=44.8
Q ss_pred CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCCCCc
Q 011309 291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV 360 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~~~ 360 (489)
...-.|.+|++-.-+....+|||.+|..|+...-... +. .||+||..+..-.-+|...+
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~----------~~-tcP~t~~~l~~~~L~pN~~L 162 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV----------GH-FDPVTRSPLTQDQLIPNLAM 162 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT----------CS-BCTTTCCBCCGGGCEECHHH
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC----------CC-CCCCCcCCCChhhCcchHHH
Confidence 4567899999999999999999999999998876432 11 49999998876544454333
No 179
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.84 E-value=0.039 Score=44.25 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=43.1
Q ss_pred CCcchhhhhhhhcccccccC-CcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCC--cccc-cccceecCC
Q 011309 291 DDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHG-IVSFTKLPG 357 (489)
Q Consensus 291 ~~~~~C~iCle~~~~v~~~~-C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~--CR~~-I~~~~~~~~ 357 (489)
.....|.||++-.-+....+ |||.||..|+...-..... ..+...||+ |+.. +..-.-.|.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~------~~~~~~CP~tgc~~~~l~~~~L~pn 69 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQK------RKKKAYCPQIGCSHTDIRKSDLIQD 69 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHT------TTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccC------cCCCCCCCcCcCcccccCHhhCcCC
Confidence 44567999999999988885 9999999999888644310 112346999 9976 554433444
No 180
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=91.63 E-value=0.086 Score=42.48 Aligned_cols=39 Identities=21% Similarity=0.488 Sum_probs=29.8
Q ss_pred ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309 306 VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL 355 (489)
Q Consensus 306 v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~ 355 (489)
...-||.|-||..|+...-... ...||.||+.|.+.-..
T Consensus 15 gRmIPCkHvFCydCa~~~~~~~-----------~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 15 GRMIPCKHVFCYDCAILHEKKG-----------DKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp EEEETTCCEEEHHHHHHHHHTT-----------CCBCTTTCCBCSEEEEE
T ss_pred eeeccccccHHHHHHHHHHhcc-----------CCCCcCcCCeeeeeEEe
Confidence 3567999999999998874332 12499999999987654
No 181
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=88.61 E-value=0.15 Score=48.61 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=40.5
Q ss_pred CCCcchhhhhhhhcccccc-cCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCC--cccccccc
Q 011309 290 SDDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHGIVSF 352 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v~~-~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~--CR~~I~~~ 352 (489)
....-.|.+|++..-+... ..|||.||..|+....... +...||+ ||..+..-
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~----------~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY----------TTRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC----------SCEECSGGGCSCEECGG
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC----------CCCCCCcccccCcCchh
Confidence 3445679999999988776 5999999999998885321 2346999 99977543
No 182
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=73.68 E-value=0.83 Score=45.20 Aligned_cols=57 Identities=18% Similarity=0.369 Sum_probs=36.0
Q ss_pred CCCcchhhhhhhhccc------cc--ccCCcchhhhhHHHHhhhcC---CCCCCCCCCCCCCCCCCcccccc
Q 011309 290 SDDADTCAVCLERACT------VA--AEGCRHELCVRCALYLCSTN---NIPSEMVGPPGSIPCPLCRHGIV 350 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~------v~--~~~C~H~~C~~C~~~lC~~~---~~~~~~~~~~~~~~CP~CR~~I~ 350 (489)
+.+...|.||++..-+ .. -..|+|.|=..|...+=... ..+... -...||+||+.|.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnv----i~G~CPyCr~pIs 372 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEV----SFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTC----CEEECTTTCCEEE
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccc----cCCCCCCCCCcCC
Confidence 3567889999976544 11 23799999888887764332 111111 0125999999886
No 183
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=66.98 E-value=17 Score=32.37 Aligned_cols=136 Identities=11% Similarity=0.053 Sum_probs=86.0
Q ss_pred CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309 9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG 88 (489)
Q Consensus 9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G 88 (489)
+..+.|-.|+..|++++...+.+...+... . +..=..|...|++++++.-..+--|+.
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~----W--k~Lg~~AL~~gn~~lAe~cy~~~~D~~---------------- 64 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKLNDSIT----W--ERLIQEALAQGNASLAEMIYQTQHSFD---------------- 64 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHCCHHH----H--HHHHHHHHHTTCHHHHHHHHHHTTCHH----------------
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHhCCHHH----H--HHHHHHHHHcCChHHHHHHHHHhCCHH----------------
Confidence 446789999999999998887764311111 0 233355678899999998887633321
Q ss_pred ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH-
Q 011309 89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF- 167 (489)
Q Consensus 89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~- 167 (489)
..+.+....|+.+-++.|.. +-...++-..+++.+-..|++
T Consensus 65 -~L~~Ly~~tg~~e~L~kla~-------------------------------------iA~~~g~~n~af~~~l~lGdv~ 106 (177)
T 3mkq_B 65 -KLSFLYLVTGDVNKLSKMQN-------------------------------------IAQTREDFGSMLLNTFYNNSTK 106 (177)
T ss_dssp -HHHHHHHHHTCHHHHHHHHH-------------------------------------HHHHTTCHHHHHHHHHHHTCHH
T ss_pred -HHHHHHHHhCCHHHHHHHHH-------------------------------------HHHHCccHHHHHHHHHHcCCHH
Confidence 23445555677666655542 111122334577888788887
Q ss_pred HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCC
Q 011309 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGAS 222 (489)
Q Consensus 168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Gad 222 (489)
+++++|++.|-- .-+...|-.+|..++.+-|++ .|.+
T Consensus 107 ~~i~lL~~~~r~------------------~eA~~~A~t~g~~~~a~~~~~~~~~~ 144 (177)
T 3mkq_B 107 ERSSIFAEGGSL------------------PLAYAVAKANGDEAAASAFLEQAEVD 144 (177)
T ss_dssp HHHHHHHHTTCH------------------HHHHHHHHHTTCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCh------------------HHHHHHHHHcCcHHHHHHHHHHhCCc
Confidence 588888865321 125667777999999998885 3554
No 184
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=58.05 E-value=5.7 Score=28.63 Aligned_cols=50 Identities=16% Similarity=0.388 Sum_probs=31.1
Q ss_pred CCCcchhhhhhhhcccccccCCcc-----hhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309 290 SDDADTCAVCLERACTVAAEGCRH-----ELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI 349 (489)
Q Consensus 290 ~~~~~~C~iCle~~~~v~~~~C~H-----~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I 349 (489)
..+.+.|.||++..-.....||.+ .+=..|....-.... ...||+||...
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~----------~~~C~~C~~~~ 57 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR----------NTACQICGVVY 57 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT----------CSBCTTTCCBC
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC----------CCccCCCCCee
Confidence 346688999998765555678532 111246666654431 24599999865
No 185
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=55.02 E-value=36 Score=35.19 Aligned_cols=150 Identities=15% Similarity=0.088 Sum_probs=88.4
Q ss_pred HHHHHHcCCHHHHHHHhh----cCCCCcccCCCCCCchHHHHHHHhC--------------cHHHHHHHHHcCCCCCCcC
Q 011309 14 LVSAARDGDFVEAKMLLD----CNPCLAKYSTFGGLNSPLHFAAAKG--------------HNEIVALLLENGADVNSRN 75 (489)
Q Consensus 14 L~~Aa~~G~~~~Vk~LL~----~g~~l~~~~~~~~g~TpLh~Aa~~G--------------~~eivk~LLe~Gad~n~~d 75 (489)
|...++.|+++.+..|++ .|..++... ++.|..|+..+ -.++++.+.+.|..+|...
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t-----yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYH-----YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH-----HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH-----HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 444457899887776664 455444332 45555554322 1357777788899888765
Q ss_pred CCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCC-C
Q 011309 76 YCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG-G 154 (489)
Q Consensus 76 ~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~-G 154 (489)
. .+.+...+..|+.+-+..|++..... + + ..|.. .
T Consensus 108 y------------n~lI~~~~~~g~~~~A~~l~~~M~~~--------------g-----------------~-~Pd~~ty 143 (501)
T 4g26_A 108 F------------TNGARLAVAKDDPEMAFDMVKQMKAF--------------G-----------------I-QPRLRSY 143 (501)
T ss_dssp H------------HHHHHHHHHHTCHHHHHHHHHHHHHT--------------T-----------------C-CCCHHHH
T ss_pred H------------HHHHHHHHhcCCHHHHHHHHHHHHHc--------------C-----------------C-CCcccee
Confidence 4 35566777889988777776431100 0 0 00000 1
Q ss_pred ccHHHHHHHcCCHH----HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCC
Q 011309 155 ITALHMAALNGYFD----CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS----RGASRM 224 (489)
Q Consensus 155 ~TpLh~Aa~~g~~e----~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~----~Gadvn 224 (489)
.+.|...+..|..+ +++.+.+.|..++..... +.|...+..|+.+-+..|++ .|..++
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~------------~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA------------ALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH------------HHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 23455556677765 445556778888876643 66777788888776655554 455543
No 186
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=54.79 E-value=4 Score=29.54 Aligned_cols=48 Identities=8% Similarity=-0.030 Sum_probs=36.7
Q ss_pred chhhhhhhhccccccc-CCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309 294 DTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT 353 (489)
Q Consensus 294 ~~C~iCle~~~~v~~~-~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~ 353 (489)
-.|.++++-.-+.... ++||-++.+|+...=.... .||+.+..+..-.
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~------------~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG------------NDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS------------BCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC------------CCcCCcCCCChhh
Confidence 4578888888777777 9999999999998853321 3999998876543
No 187
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.31 E-value=8.6 Score=29.05 Aligned_cols=51 Identities=20% Similarity=0.452 Sum_probs=31.1
Q ss_pred CCCcchhhhhhhhcc-cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309 290 SDDADTCAVCLERAC-TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV 350 (489)
Q Consensus 290 ~~~~~~C~iCle~~~-~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~ 350 (489)
....+.|.||.+..- ......|+|.|=..|+-..=.+. ....||+||+...
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~----------~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN----------AEPRCPHCNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC----------SSCCCTTTCSCCC
T ss_pred cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhc----------CCCCCCCCcCcCC
Confidence 356788999987652 22334788776455665552111 1235999998765
No 188
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=52.89 E-value=9.3 Score=21.99 Aligned_cols=18 Identities=39% Similarity=1.119 Sum_probs=15.7
Q ss_pred cCCCCCCCcCCcccCCCC
Q 011309 411 CSPFPSVAIPLCTCNDGP 428 (489)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~ 428 (489)
|.+||.-+--+|.|.|-|
T Consensus 3 cg~ypnaachpc~c~~rp 20 (26)
T 1p1p_A 3 CGSYPNAACHPCSCKDRP 20 (26)
T ss_dssp STTSCCSSCCTTTSTTCC
T ss_pred cccCCCccccccccCCCC
Confidence 788999999999998766
No 189
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=44.28 E-value=35 Score=34.34 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=42.5
Q ss_pred HHHHcCCHHHHHHHhhcCCCCccc------------CCCCCCchHHHHHHHhCcHHHHHHHHH
Q 011309 16 SAARDGDFVEAKMLLDCNPCLAKY------------STFGGLNSPLHFAAAKGHNEIVALLLE 66 (489)
Q Consensus 16 ~Aa~~G~~~~Vk~LL~~g~~l~~~------------~~~~~g~TpLh~Aa~~G~~eivk~LLe 66 (489)
..+..|+...|+..+..|.+.+.. +.+.-|.|.+|+|++..+.+++..|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 356789999999999998875543 334557999999999999999999997
No 190
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=42.10 E-value=16 Score=24.94 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCcccccccceecCC
Q 011309 332 EMVGPPGSIPCPLCRHGIVSFTKLPG 357 (489)
Q Consensus 332 ~~~~~~~~~~CP~CR~~I~~~~~~~~ 357 (489)
+.......+.||+|-=.|.--+..|.
T Consensus 16 ~el~~lP~IrCpyCGyrii~KvR~p~ 41 (48)
T 4ayb_P 16 EQLKVLPGVRCPYCGYKIIFMVRKPT 41 (48)
T ss_dssp CCSCCCSSSCCTTTCCSCEECCCCCS
T ss_pred HHHhhCCCcccCccCcEEEEEecCCc
Confidence 33444557999999877765555554
No 191
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=28.17 E-value=17 Score=28.74 Aligned_cols=57 Identities=23% Similarity=0.428 Sum_probs=37.9
Q ss_pred CCCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCCC
Q 011309 289 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS 358 (489)
Q Consensus 289 ~~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~ 358 (489)
...|..-|..|+-..- -.+.=..|-+|.+|.=.+=.. +..||+|...+=.-++++..
T Consensus 24 s~~G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~------------SdrCpIC~~pLPtkl~~~~~ 80 (99)
T 2ko5_A 24 THLGPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSV------------SNRCPICKMPLPTKLRPSAA 80 (99)
T ss_dssp CCSCCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSS------------SSEETTTTEECCCCSCTTTS
T ss_pred cccCcccChhhccccC-CeeeecchhhHHHHHHHHHhh------------ccCCcccCCcCCcceecCcC
Confidence 4567788888874442 333444599999998766422 34599999887666665543
No 192
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=25.25 E-value=48 Score=21.53 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCHHHHHHHhh
Q 011309 12 ERLVSAARDGDFVEAKMLLD 31 (489)
Q Consensus 12 t~L~~Aa~~G~~~~Vk~LL~ 31 (489)
..+..|+..||++.++.|=.
T Consensus 15 QqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 15 KQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 35777888888888887744
No 193
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=23.19 E-value=1.2e+02 Score=30.52 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHhCcHHHHHHHHHcCCCCCCcCCCCC---cc-cccCCCCChHHHHHHHcCCHHHHHHHHH
Q 011309 51 FAAAKGHNEIVALLLENGADVNSRNYCGQ---VT-RADYLSGRTALHFAAVNGHVRCIRLVVA 109 (489)
Q Consensus 51 ~Aa~~G~~eivk~LLe~Gad~n~~d~~g~---i~-~~d~~~G~TpLh~Aa~~g~~~~vk~LL~ 109 (489)
+.+..|+...|+..|..|-|++.+=...+ ++ ..-+..|.|-+|+|++..+.+++-.|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 34568999999999999888765432111 00 0114479999999999999999999995
Done!