Query 011310
Match_columns 489
No_of_seqs 230 out of 1361
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 05:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cch_B Cyclin A2, cyclin-A; co 100.0 3.4E-33 1.2E-37 269.5 10.6 130 360-489 2-133 (260)
2 2f2c_A Cyclin homolog, V-cycli 100.0 9.3E-33 3.2E-37 265.6 10.7 133 354-489 11-146 (254)
3 1g3n_C V-cyclin; cyclin-depend 100.0 1.2E-32 4E-37 265.3 9.2 133 354-489 10-145 (257)
4 2b9r_A Human cyclin B1; cell c 100.0 1.1E-32 3.8E-37 267.8 8.0 130 359-489 1-132 (269)
5 1f5q_B Gamma herpesvirus cycli 100.0 1.1E-32 3.6E-37 268.0 6.7 129 354-489 13-143 (252)
6 1w98_B Cyclin E, G1/S-specific 100.0 5.3E-32 1.8E-36 265.4 11.2 133 357-489 10-145 (283)
7 3g33_B CCND3 protein; Ser/Thr 100.0 1.9E-31 6.4E-36 264.9 10.7 131 357-489 32-165 (306)
8 2w96_A G1/S-specific cyclin-D1 100.0 3.9E-30 1.3E-34 249.5 10.7 131 356-489 18-151 (271)
9 2i53_A Cyclin K; cell cycle, t 99.8 9.9E-21 3.4E-25 181.0 6.7 101 388-489 32-145 (258)
10 2ivx_A Cyclin-T2; transcriptio 99.8 9E-21 3.1E-25 181.7 5.5 99 390-489 24-140 (257)
11 3rgf_B Cyclin-C; protein kinas 99.8 2.5E-19 8.7E-24 175.7 8.8 97 393-489 39-151 (285)
12 1zp2_A RNA polymerase II holoe 99.8 5.9E-19 2E-23 167.6 10.7 92 397-489 28-128 (235)
13 2pk2_A Cyclin-T1, protein TAT; 99.8 4.2E-20 1.4E-24 187.6 1.4 98 391-489 32-147 (358)
14 1jkw_A Cyclin H; cell cycle, c 99.7 1.9E-17 6.5E-22 165.6 7.2 95 394-489 54-157 (323)
15 1c9b_A General transcription f 99.4 1.2E-12 4.1E-17 121.7 8.5 93 395-489 3-96 (207)
16 1ais_B TFB TFIIB, protein (tra 98.9 2.5E-09 8.6E-14 98.6 7.9 93 395-489 7-100 (200)
17 3k7a_M Transcription initiatio 98.2 1.9E-06 6.6E-11 86.8 6.8 89 397-487 126-215 (345)
18 2pmi_B PHO85 cyclin PHO80, ami 97.8 0.00017 5.7E-09 72.4 12.9 125 358-489 32-169 (293)
19 4bbr_M Transcription initiatio 96.6 0.0031 1.1E-07 63.9 6.9 89 398-488 127-216 (345)
20 1ais_B TFB TFIIB, protein (tra 93.8 0.12 4.2E-06 47.1 7.0 85 402-488 110-195 (200)
21 1c9b_A General transcription f 86.0 1.7 5.8E-05 39.8 7.2 83 401-485 103-186 (207)
22 2i53_A Cyclin K; cell cycle, t 75.5 2.3 7.7E-05 40.1 4.1 86 402-487 153-250 (258)
23 2pk2_A Cyclin-T1, protein TAT; 74.8 2.4 8.2E-05 42.9 4.4 85 403-487 156-246 (358)
24 2ivx_A Cyclin-T2; transcriptio 74.8 2.9 9.8E-05 39.6 4.6 85 402-486 148-238 (257)
25 1zp2_A RNA polymerase II holoe 69.2 2 6.9E-05 40.2 2.2 81 402-486 136-218 (235)
26 3rgf_B Cyclin-C; protein kinas 64.8 5.6 0.00019 38.6 4.4 79 402-485 159-239 (285)
27 3k7a_M Transcription initiatio 63.6 1.5 5E-05 44.1 0.0 55 402-456 237-291 (345)
28 2b9r_A Human cyclin B1; cell c 62.8 5.7 0.00019 38.1 4.0 62 402-463 140-203 (269)
29 2f2c_A Cyclin homolog, V-cycli 57.0 18 0.0006 34.2 6.2 82 403-485 155-245 (254)
30 1g3n_C V-cyclin; cyclin-depend 56.8 19 0.00065 34.0 6.4 85 401-485 152-245 (257)
31 3g33_B CCND3 protein; Ser/Thr 55.8 17 0.00056 35.8 6.0 84 403-486 174-265 (306)
32 2cch_B Cyclin A2, cyclin-A; co 49.3 16 0.00054 34.7 4.5 82 401-484 140-224 (260)
33 4bbr_M Transcription initiatio 48.1 3.8 0.00013 41.3 0.0 57 400-456 235-291 (345)
34 2w96_A G1/S-specific cyclin-D1 45.4 18 0.00063 34.4 4.3 85 402-486 159-255 (271)
35 1jkw_A Cyclin H; cell cycle, c 37.5 20 0.0007 35.4 3.4 67 415-481 185-253 (323)
36 2p1m_A SKP1-like protein 1A; F 35.6 9.7 0.00033 34.1 0.6 38 440-477 112-149 (160)
37 3h4c_A Transcription factor TF 33.6 76 0.0026 30.9 6.4 68 400-468 15-85 (260)
38 2ast_A S-phase kinase-associat 32.0 17 0.0006 32.2 1.7 55 411-476 92-149 (159)
39 1fs1_B SKP1, cyclin A/CDK2-ass 29.0 20 0.00067 31.4 1.5 52 400-465 79-133 (141)
40 3v7d_A Suppressor of kinetocho 27.3 28 0.00097 31.5 2.3 56 411-477 99-157 (169)
No 1
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.98 E-value=3.4e-33 Score=269.51 Aligned_cols=130 Identities=41% Similarity=0.708 Sum_probs=127.3
Q ss_pred hhhhhHHHHHHHHHHHHhcCCCCccccccCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCe
Q 011310 360 EVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEM 439 (489)
Q Consensus 360 ~v~EYaeDIyqyLr~rE~~~~p~~nYL~~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kL 439 (489)
.|.||++|||.||+++|.++.|.++||..|++|++.||.+++|||++||..|+|.++|+|+||+||||||+...+++.++
T Consensus 2 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~l 81 (260)
T 2cch_B 2 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKL 81 (260)
T ss_dssp CCCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred chHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHHH-HhHhcCCC
Q 011310 440 QLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 440 QLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME~-IL~tLdWD 489 (489)
||+|+||||||||+||.++|.+.+|++++ +.|++++|++||+ ||++|+|+
T Consensus 82 qlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~ 133 (260)
T 2cch_B 82 QLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFD 133 (260)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999 9999999999999 99999996
No 2
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.98 E-value=9.3e-33 Score=265.60 Aligned_cols=133 Identities=23% Similarity=0.306 Sum_probs=126.9
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHhcCCCCccccc-cCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhcc
Q 011310 354 DDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMS-SQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEV 432 (489)
Q Consensus 354 D~~dpl~v~EYaeDIyqyLr~rE~~~~p~~nYL~-~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~ 432 (489)
+..||.++.| +|||+ |++.|.++.|.++||. .|++|++.||.+++|||++||..|+|.++|+|+||+||||||+..
T Consensus 11 ~~~dp~l~~~--~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~ 87 (254)
T 2f2c_A 11 AKIDSTTMKD--PRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKK 87 (254)
T ss_dssp CCCCHHHHTC--HHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTS
T ss_pred CCCCcccccH--HHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccC
Confidence 4568999988 99999 9999999999999996 899999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHHH-HhHhcCCC
Q 011310 433 KIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 433 ~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME~-IL~tLdWD 489 (489)
.+.+.++||+|+||||||||+||..+|.+.+|++++ +.|++++|++||+ ||++|+|+
T Consensus 88 ~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~ 146 (254)
T 2f2c_A 88 QGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWD 146 (254)
T ss_dssp CCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTC
T ss_pred CcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999999999999 9999999999999 99999996
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=1.2e-32 Score=265.31 Aligned_cols=133 Identities=22% Similarity=0.323 Sum_probs=124.0
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHhcCCCCccccc-cCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhcc
Q 011310 354 DDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMS-SQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEV 432 (489)
Q Consensus 354 D~~dpl~v~EYaeDIyqyLr~rE~~~~p~~nYL~-~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~ 432 (489)
+..||.++.| +||| ||+++|.++.|.++|+. .|++|++.||.+++|||++||..|+|.++|+|+||+||||||+..
T Consensus 10 ~~~dp~~~~~--~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~ 86 (257)
T 1g3n_C 10 GLLDPTLCED--RIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK 86 (257)
T ss_dssp ------CHHH--HHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccccH--HHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccC
Confidence 4468999988 9999 99999999999999984 899999999999999999999999999999999999999999999
Q ss_pred ccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHHH-HhHhcCCC
Q 011310 433 KIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 433 ~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME~-IL~tLdWD 489 (489)
.+.+.++||+|+||||||||+||.++|.+.+|++++ +.|++++|++||+ ||++|+|+
T Consensus 87 ~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~ 145 (257)
T 1g3n_C 87 QVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWR 145 (257)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999999999999 9999999999999 99999996
No 4
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.97 E-value=1.1e-32 Score=267.82 Aligned_cols=130 Identities=37% Similarity=0.720 Sum_probs=122.1
Q ss_pred chhhhhHHHHHHHHHHHHhcCCCCccccccCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCC
Q 011310 359 LEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNE 438 (489)
Q Consensus 359 l~v~EYaeDIyqyLr~rE~~~~p~~nYL~~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~k 438 (489)
++|.||++|||+||+.+|..+.+.++||..| +|++.||.+++|||+++|..|+|.++|+|+||+||||||+...+++.+
T Consensus 1 ~~~~eY~~di~~~l~~~E~~~~~~~~y~~~q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~ 79 (269)
T 2b9r_A 1 NLSSEYVKDIYAYLRQLEAAQAVRPKYLLGR-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM 79 (269)
T ss_dssp ------CCTTTTTHHHHHHTTCCCTTTTSSS-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG
T ss_pred CChHHHHHHHHHHHHHHHHhhCCCcccccCC-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4689999999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred eeEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHHH-HhHhcCCC
Q 011310 439 MQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 439 LQLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME~-IL~tLdWD 489 (489)
+||+|+||||||||+||.++|.+.+|++++ +.|+++||++||+ ||++|+|+
T Consensus 80 lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~ 132 (269)
T 2b9r_A 80 LQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFG 132 (269)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999 9999999999999 99999996
No 5
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=1.1e-32 Score=267.97 Aligned_cols=129 Identities=20% Similarity=0.273 Sum_probs=122.0
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHhcCCCCccccccCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccc
Q 011310 354 DDCNQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVK 433 (489)
Q Consensus 354 D~~dpl~v~EYaeDIyqyLr~rE~~~~p~~nYL~~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~ 433 (489)
...||.++.| +||++|+++|.++.| +..|++|++.||.+++|||++||..|+|.++|+|+||+||||||+...
T Consensus 13 ~~~dp~l~~d---~i~~~l~~~E~~~~p----~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~ 85 (252)
T 1f5q_B 13 SLLNEEDCRQ---MIYRSEREHDARMVG----VNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR 85 (252)
T ss_dssp TTCCHHHHHH---HHHHHHHHHHHHHSS----SSHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHhHH---HHHHHHHHHHHHhCc----CccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCC
Confidence 3457888865 999999999998765 567889999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHHH-HhHhcCCC
Q 011310 434 IKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 434 V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME~-IL~tLdWD 489 (489)
+.+.+|||+|+||||||+||||.+||.+.+|++++ +.|+++||++||+ ||++|+|+
T Consensus 86 v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~ 143 (252)
T 1f5q_B 86 IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWV 143 (252)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999 9999999999999 99999996
No 6
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.97 E-value=5.3e-32 Score=265.38 Aligned_cols=133 Identities=26% Similarity=0.486 Sum_probs=129.5
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCCCccccccCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhc-cccC
Q 011310 357 NQLEVAEYVDEIYHYYWVMEAQNPPLENYMSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSE-VKIK 435 (489)
Q Consensus 357 dpl~v~EYaeDIyqyLr~rE~~~~p~~nYL~~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~-~~V~ 435 (489)
+|.++.||.+|||++|+.+|..+.+.++|+..|++|++.||.+++|||+++|.+|++.++|+|+||+||||||+. ..+.
T Consensus 10 ~p~l~~~y~~~i~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~ 89 (283)
T 1w98_B 10 LPVLSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV 89 (283)
T ss_dssp SCCCSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CcchhhcCHHHHHHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCC
Confidence 688899999999999999999999999999999999999999999999999999999999999999999999998 6899
Q ss_pred CCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHHH-HhHhcCCC
Q 011310 436 KNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 436 r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME~-IL~tLdWD 489 (489)
+.++||+|+||||||||+||.++|.+.+|++++ +.|+++||++||+ ||++|+|+
T Consensus 90 ~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~ 145 (283)
T 1w98_B 90 KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWR 145 (283)
T ss_dssp GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999 9999999999999 99999996
No 7
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.97 E-value=1.9e-31 Score=264.94 Aligned_cols=131 Identities=25% Similarity=0.355 Sum_probs=123.7
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCCCccccc-cCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccC
Q 011310 357 NQLEVAEYVDEIYHYYWVMEAQNPPLENYMS-SQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIK 435 (489)
Q Consensus 357 dpl~v~EYaeDIyqyLr~rE~~~~p~~nYL~-~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~ 435 (489)
||.++ |.+|||+||+.+|..+.|.++|+. .|++|++.||.+++|||++||..|+|.++|+|+||+||||||+...+.
T Consensus 32 dp~l~--~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~ 109 (306)
T 3g33_B 32 DPRLL--GDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTR 109 (306)
T ss_dssp -------CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCC
T ss_pred CCccc--chHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCc
Confidence 56555 889999999999999999999997 799999999999999999999999999999999999999999999999
Q ss_pred CCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHHH-HhHhcCCC
Q 011310 436 KNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 436 r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME~-IL~tLdWD 489 (489)
+.++||+|+||||||+|+||..+|.+.+|++++ +.|++++|++||+ ||++|+|+
T Consensus 110 ~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~ 165 (306)
T 3g33_B 110 KAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWD 165 (306)
T ss_dssp GGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999 9999999999999 99999996
No 8
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.96 E-value=3.9e-30 Score=249.48 Aligned_cols=131 Identities=25% Similarity=0.375 Sum_probs=121.1
Q ss_pred CCcchhhhhHHHHHHHHHHHHhcCCCCccccc-cCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhcccc
Q 011310 356 CNQLEVAEYVDEIYHYYWVMEAQNPPLENYMS-SQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKI 434 (489)
Q Consensus 356 ~dpl~v~EYaeDIyqyLr~rE~~~~p~~nYL~-~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V 434 (489)
.||..+ .+|||++|+..|.++.|.++|+. .|++|++.||.++++||+++|.+|++.++|+|+||+||||||+...+
T Consensus 18 ~dp~~~---~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v 94 (271)
T 2w96_A 18 PDANLL---NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPV 94 (271)
T ss_dssp ----------CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCC
T ss_pred CCCccc---HHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCc
Confidence 466665 57999999999999999999985 89999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHHH-HhHhcCCC
Q 011310 435 KKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 435 ~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME~-IL~tLdWD 489 (489)
.+.++||+|+||||||||+||.+||.+++|++++ +.|++++|++||+ ||++|+|+
T Consensus 95 ~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~ 151 (271)
T 2w96_A 95 KKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWN 151 (271)
T ss_dssp CTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCc
Confidence 9999999999999999999999999999999999 9999999999999 99999996
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.81 E-value=9.9e-21 Score=180.95 Aligned_cols=101 Identities=18% Similarity=0.273 Sum_probs=93.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHH
Q 011310 388 SQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISI 467 (489)
Q Consensus 388 ~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I 467 (489)
.++++...||..+++||.++|..|+|.++|+++|++|||||++...+.+.++||||+||||||||+|| .++.+.+|+.+
T Consensus 32 ~~~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~ 110 (258)
T 2i53_A 32 LDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKT 110 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcCHHHHHHHHHHHHHcccc-ccccHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999 58999999975
Q ss_pred h------ccC------CHHHHHHHHH-HhHhcCCC
Q 011310 468 S------ETY------TRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 468 ~------naY------TkeqIL~ME~-IL~tLdWD 489 (489)
+ +.| ++++|++||+ ||++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~ 145 (258)
T 2i53_A 111 ARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFD 145 (258)
T ss_dssp HHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCc
Confidence 4 234 4899999999 99999996
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.81 E-value=9e-21 Score=181.73 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-
Q 011310 390 TDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS- 468 (489)
Q Consensus 390 peIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~- 468 (489)
++....||.++++||.++|..|+|.++|+++|++|||||++...+.+.++||||+||||||||+||. ++.+.+|+.++
T Consensus 24 ~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~ 102 (257)
T 2ivx_A 24 ADKELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHH
Confidence 3445689999999999999999999999999999999999999999999999999999999999999 89999998765
Q ss_pred --------------ccCC--HHHHHHHHH-HhHhcCCC
Q 011310 469 --------------ETYT--RDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 469 --------------naYT--keqIL~ME~-IL~tLdWD 489 (489)
+.|+ +++|++||+ ||++|+|+
T Consensus 103 ~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~ 140 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFE 140 (257)
T ss_dssp HHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccc
Confidence 2455 899999999 99999996
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=175.75 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-c--
Q 011310 393 TPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-E-- 469 (489)
Q Consensus 393 T~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-n-- 469 (489)
..+||.++++||.++|..|+|.++|+++|++|||||++...+...++|+||+||||||||+||..+|.+.+++.++ .
T Consensus 39 e~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~ 118 (285)
T 3rgf_B 39 YWKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVL 118 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 3479999999999999999999999999999999999999999999999999999999999999999999998766 3
Q ss_pred ------------cCCHHHHHHHHH-HhHhcCCC
Q 011310 470 ------------TYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 470 ------------aYTkeqIL~ME~-IL~tLdWD 489 (489)
.|++++|++||+ ||++|+||
T Consensus 119 k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~ 151 (285)
T 3rgf_B 119 KTRFSYAFPKEFPYRMNHILECEFYLLELMDCC 151 (285)
T ss_dssp HHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTC
T ss_pred cccccccCchhhHHHHHHHHHHHHHHHHHcCCC
Confidence 379999999999 99999997
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.77 E-value=5.9e-19 Score=167.60 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCC-CCeeEehhhhhhhhhccCccCCCCHHHHHHHh-c-----
Q 011310 397 RGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKK-NEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-E----- 469 (489)
Q Consensus 397 RaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r-~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-n----- 469 (489)
|..+++||.+++..|+|.++|+++|++|||||++...+.. .++|+||+||||||||+|| .++.+.+|+.++ +
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~~~ 106 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWSLK 106 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999 9999999999999999999 488999999998 6
Q ss_pred -cCCHHHHHHHHH-HhHhcCCC
Q 011310 470 -TYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 470 -aYTkeqIL~ME~-IL~tLdWD 489 (489)
.|++++|++||+ ||++|+|+
T Consensus 107 ~~~~~~~I~~~E~~iL~~L~f~ 128 (235)
T 1zp2_A 107 VKLSRSNISEIEFEIISVLDAF 128 (235)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTC
T ss_pred hhccHHHHHHHHHHHHHHCCCc
Confidence 689999999999 99999996
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.77 E-value=4.2e-20 Score=187.60 Aligned_cols=98 Identities=18% Similarity=0.281 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHh--
Q 011310 391 DITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-- 468 (489)
Q Consensus 391 eIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-- 468 (489)
+....||.++++||++||..|+|.++|+++|++||||||+...+.+.++||||+||||||||+||. ++.+.+|+.++
T Consensus 32 ~~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~ 110 (358)
T 2pk2_A 32 DKELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHT 110 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHH
Confidence 445689999999999999999999999999999999999999999999999999999999999999 89999998654
Q ss_pred -------------ccCC--HHHHHHHHH-HhHhcCCC
Q 011310 469 -------------ETYT--RDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 469 -------------naYT--keqIL~ME~-IL~tLdWD 489 (489)
+.|+ +++|++||+ ||++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~ 147 (358)
T 2pk2_A 111 CLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFE 147 (358)
T ss_dssp HHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTC
T ss_pred HhccccccccccchhhhHHHHHHHHHHHHHHHHcCCc
Confidence 2354 899999999 99999996
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.69 E-value=1.9e-17 Score=165.58 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-c-
Q 011310 394 PQMRGILINWLIEVHLKFD--LMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-E- 469 (489)
Q Consensus 394 ~kmRaiLIDWLiEV~~kFk--Ls~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-n- 469 (489)
..+|...++||.++|..|+ |.++|+++|++|||||++...+...++|+||+||||||||+||. ++.+.+|++.+ .
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccC
Confidence 4589999999999999999 99999999999999999999999999999999999999999998 67899998866 3
Q ss_pred ----cCCHHHHHHHHH-HhHhcCCC
Q 011310 470 ----TYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 470 ----aYTkeqIL~ME~-IL~tLdWD 489 (489)
.|++++|+.||+ ||++|+|+
T Consensus 133 p~~~~~~~~~Il~~E~~iL~~L~f~ 157 (323)
T 1jkw_A 133 PLGQEKALEQILEYELLLIQQLNFH 157 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hhhhHHHHHHHHHHHHHHHHHCCCc
Confidence 478999999999 99999996
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.35 E-value=1.2e-12 Score=121.66 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHhccCCHH
Q 011310 395 QMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRD 474 (489)
Q Consensus 395 kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~naYTke 474 (489)
+......+||.++|..|+|.++|+..|+.||+||+....+...++++|+++|||||||+||. |+.+.|++.+++ ++..
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~-p~~l~di~~~~~-~~~~ 80 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGV-PRTFKEICAVSR-ISKK 80 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHTSS-SCHH
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHC-CCHH
Confidence 44567889999999999999999999999999999999999999999999999999999998 899999987766 7899
Q ss_pred HHHHHHH-HhHhcCCC
Q 011310 475 HMLRMVC-ILNGLNLF 489 (489)
Q Consensus 475 qIL~ME~-IL~tLdWD 489 (489)
+|.+||+ ||+.|+|+
T Consensus 81 ~i~~~~~~ll~~L~~~ 96 (207)
T 1c9b_A 81 EIGRCFKLILKALETS 96 (207)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999 99999986
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=98.89 E-value=2.5e-09 Score=98.61 Aligned_cols=93 Identities=13% Similarity=0.092 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHhccCCHH
Q 011310 395 QMRGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRD 474 (489)
Q Consensus 395 kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~naYTke 474 (489)
+......+||.++|..++|++.+...|..|++||+....+.....+.++++|||||||.|+ .|..+.|++.+++ ++..
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~-v~~~ 84 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLK-VPRTLDEIADIAR-VDKK 84 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTT-SCHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHC-CCHH
Confidence 3456788999999999999999999999999999999888888999999999999999988 6899999987775 6789
Q ss_pred HHHHHHH-HhHhcCCC
Q 011310 475 HMLRMVC-ILNGLNLF 489 (489)
Q Consensus 475 qIL~ME~-IL~tLdWD 489 (489)
+|..+++ |++.|+|+
T Consensus 85 ~i~~~~~~l~~~L~~~ 100 (200)
T 1ais_B 85 EIGRSYRFIARNLNLT 100 (200)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999 99999985
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.9e-06 Score=86.85 Aligned_cols=89 Identities=11% Similarity=0.038 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHhccCCHHHH
Q 011310 397 RGILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHM 476 (489)
Q Consensus 397 RaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~naYTkeqI 476 (489)
.......|-.++..++|...+.-.|..||.+|+....+....++.|+++|||||||.|+. |..+.||+.+++ ++..+|
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~-prtl~ei~~~~~-v~~keI 203 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH-VKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBS-SCCHHHHHHSSS-CCSHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCC-CccHHHHHHHHC-CCHHHH
Confidence 446678899999999999999999999999999999999999999999999999998876 889999887764 678999
Q ss_pred HHHHH-HhHhcC
Q 011310 477 LRMVC-ILNGLN 487 (489)
Q Consensus 477 L~ME~-IL~tLd 487 (489)
.++++ |++.|+
T Consensus 204 gr~~~~l~~~L~ 215 (345)
T 3k7a_M 204 GKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 99999 999887
No 18
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.81 E-value=0.00017 Score=72.38 Aligned_cols=125 Identities=10% Similarity=0.066 Sum_probs=90.8
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCCC--------ccc-cccCCCCCHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHh
Q 011310 358 QLEVAEYVDEIYHYYWVMEAQNPPL--------ENY-MSSQTDITPQMRGILINWLIEVHLKFDLMPETLYLMVILLDRY 428 (489)
Q Consensus 358 pl~v~EYaeDIyqyLr~rE~~~~p~--------~nY-L~~QpeIT~kmRaiLIDWLiEV~~kFkLs~ETLfLAVnLLDRY 428 (489)
.-.+.+++..+.+.+.+.-....+. ..| ...-|.|+ +-+|+..++....++++++-+|+.||||+
T Consensus 32 ~~dlv~~IA~~L~~LI~~Nd~~~~~~~~~~~~~t~F~~~~~P~IS------I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL 105 (293)
T 2pmi_B 32 RTDLVVLISRMLVSLIAINENSATKKSDDQITLTRYHSKIPPNIS------IFNYFIRLTKFSSLEHCVLMTSLYYIDLL 105 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------CCCCTTCCSSCCSSC------HHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccccccccccccccccCCCCCCCc------HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3345667777777776654332211 111 12345553 56789999999999999999999999999
Q ss_pred hhcc---ccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHhccCCHHHHHHHHH-HhHhcCCC
Q 011310 429 LSEV---KIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHMLRMVC-ILNGLNLF 489 (489)
Q Consensus 429 LS~~---~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~naYTkeqIL~ME~-IL~tLdWD 489 (489)
.... .+......=+-++||.+|+||-+.....-..+..+ +.++.+||-.||+ .|..|+|+
T Consensus 106 ~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkV-gGisl~ELN~LE~eFL~lLdf~ 169 (293)
T 2pmi_B 106 QTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKV-GGVRCHELNILENDFLKRVNYR 169 (293)
T ss_dssp HHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHH-HTSCHHHHHHHHHHHHHTTTTC
T ss_pred HhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhc-cCcCHHHHHHHHHHHHHHcCCc
Confidence 8853 24556677788999999999977666655555544 5678999999999 99999996
No 19
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=96.58 E-value=0.0031 Score=63.87 Aligned_cols=89 Identities=11% Similarity=0.029 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHhccCCHHHHH
Q 011310 398 GILINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHML 477 (489)
Q Consensus 398 aiLIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~naYTkeqIL 477 (489)
.....+|-+++..++|+..+.-.|..||-+++....+.......++++||||||+.++. |-++.|++.+++ .+..+|-
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~-prtl~eI~~~~~-v~~keig 204 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEV-ARTFKEIQSLIH-VKTKEFG 204 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCC-BCCHHHHHHHHT-CCTTHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCC-CccHHHHHHHhC-CCHHHHH
Confidence 45566788999999999999999999999999988888888999999999999998764 788999988773 3467788
Q ss_pred HHHH-HhHhcCC
Q 011310 478 RMVC-ILNGLNL 488 (489)
Q Consensus 478 ~ME~-IL~tLdW 488 (489)
+..+ |++.|+.
T Consensus 205 r~~k~l~~~L~l 216 (345)
T 4bbr_M 205 KTLNIMKNILRG 216 (345)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHHHhCc
Confidence 8888 8888763
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=93.77 E-value=0.12 Score=47.10 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=68.2
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHhccCCHHHHHHHHH
Q 011310 402 NWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHMLRMVC 481 (489)
Q Consensus 402 DWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~naYTkeqIL~ME~ 481 (489)
++|...+..++++.++.-.|..++.+.+....+....-..++++|+++|++.... +....++...++ ++..+|...=+
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~-~~t~~ei~~~~~-vs~~ti~~~~~ 187 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGE-KRTQREVAEVAR-VTEVTVRNRYK 187 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHT-CCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCC-CCCHHHHHHHhC-CCHHHHHHHHH
Confidence 5677888899999999999999999999877677788889999999999998664 456778766663 46777877766
Q ss_pred -HhHhcCC
Q 011310 482 -ILNGLNL 488 (489)
Q Consensus 482 -IL~tLdW 488 (489)
+...|+.
T Consensus 188 ~l~~~l~~ 195 (200)
T 1ais_B 188 ELVEKLKI 195 (200)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 7666653
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=85.99 E-value=1.7 Score=39.76 Aligned_cols=83 Identities=8% Similarity=-0.001 Sum_probs=61.4
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHhccCCHHHHHHHH
Q 011310 401 INWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHMLRMV 480 (489)
Q Consensus 401 IDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~naYTkeqIL~ME 480 (489)
.++|...+..++++.++.-+|..++..-+...-+....-.-|+++|+++|++.... +....++...+ .++..+|...=
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~~~~~~-~~~~~~i~~~~-~v~~~tI~~~~ 180 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAE-KRTQKEIGDIA-GVADVTIRQSY 180 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSS-CCCHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHHHHHCC-CCCHHHHHHHh-CCCHHHHHHHH
Confidence 35677888899999999999999999988766566777888999999999998764 34566665444 44566666554
Q ss_pred H-HhHh
Q 011310 481 C-ILNG 485 (489)
Q Consensus 481 ~-IL~t 485 (489)
+ |+..
T Consensus 181 ~~l~~~ 186 (207)
T 1c9b_A 181 RLIYPR 186 (207)
T ss_dssp HHHGGG
T ss_pred HHHHHH
Confidence 4 4443
No 22
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=75.46 E-value=2.3 Score=40.12 Aligned_cols=86 Identities=10% Similarity=0.103 Sum_probs=59.4
Q ss_pred HHHHHHhhhcccch----hHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCH------HHHHHHh-cc
Q 011310 402 NWLIEVHLKFDLMP----ETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRV------KDLISIS-ET 470 (489)
Q Consensus 402 DWLiEV~~kFkLs~----ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L------~dLV~I~-na 470 (489)
++|...+..++... +...+|..+++.-+....+-...-..||++|+++|+++-....|.. ....... ..
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~ 232 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQD 232 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSS
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccC
Confidence 56667777777776 5778888888887765556666777899999999999854422211 1111121 36
Q ss_pred CCHHHHHHHHH-HhHhcC
Q 011310 471 YTRDHMLRMVC-ILNGLN 487 (489)
Q Consensus 471 YTkeqIL~ME~-IL~tLd 487 (489)
|+.++|..+-. ||....
T Consensus 233 ~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 233 VPVDVLEDICHQILDLYS 250 (258)
T ss_dssp CCHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 89999998888 876543
No 23
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=74.85 E-value=2.4 Score=42.91 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=54.5
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHhhh-ccccCCCCeeEehhhhhhhhhccCccCCCCH---HHHHHHh-ccCCHHHHH
Q 011310 403 WLIEVHLKFDLMPETLYLMVILLDRYLS-EVKIKKNEMQLVGLTSLLLASKYEDFWHPRV---KDLISIS-ETYTRDHML 477 (489)
Q Consensus 403 WLiEV~~kFkLs~ETLfLAVnLLDRYLS-~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L---~dLV~I~-naYTkeqIL 477 (489)
||......+++..+...+|.+++..-+. ...+-...-..||++||++|+++-....|.. ..+.... ..|+.++|.
T Consensus 156 fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~ 235 (358)
T 2pk2_A 156 HVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLD 235 (358)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHH
Confidence 4555556667778888888888755442 2223445567899999999999865433321 1121222 357888888
Q ss_pred HHHH-HhHhcC
Q 011310 478 RMVC-ILNGLN 487 (489)
Q Consensus 478 ~ME~-IL~tLd 487 (489)
.+-. ||..++
T Consensus 236 ~i~~~il~~y~ 246 (358)
T 2pk2_A 236 ELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 8877 777653
No 24
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=74.79 E-value=2.9 Score=39.56 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=55.0
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhhh-ccccCCCCeeEehhhhhhhhhccCccCCCCHH---HHHHHh-ccCCHHHH
Q 011310 402 NWLIEVHLKFDLMPETLYLMVILLDRYLS-EVKIKKNEMQLVGLTSLLLASKYEDFWHPRVK---DLISIS-ETYTRDHM 476 (489)
Q Consensus 402 DWLiEV~~kFkLs~ETLfLAVnLLDRYLS-~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~---dLV~I~-naYTkeqI 476 (489)
++|......++.+.+...+|..++..-+. ...+-...-..||++|+++|+++-....|... ...... ..|+.++|
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l 227 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELL 227 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHH
Confidence 34555566677788888888888755442 22234455678999999999998554333211 122222 45889999
Q ss_pred HHHHH-HhHhc
Q 011310 477 LRMVC-ILNGL 486 (489)
Q Consensus 477 L~ME~-IL~tL 486 (489)
..+-. |+..+
T Consensus 228 ~~~~~~i~~~~ 238 (257)
T 2ivx_A 228 DELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887 77654
No 25
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=69.18 E-value=2 Score=40.19 Aligned_cols=81 Identities=10% Similarity=0.001 Sum_probs=55.8
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHH
Q 011310 402 NWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMV 480 (489)
Q Consensus 402 DWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME 480 (489)
++|...+..++++.++.-+|..++..-+....+-...-..||++|+++|+++.....|. +- -. ..++.++|..+=
T Consensus 136 ~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~~~~--~~--~~~~~~~~~~i~~~~ 211 (235)
T 1zp2_A 136 TSLEQAFHDGIINQKQLEFAWSIVNDSYASSLCLMAHPHQLAYAALLISCCNDENTIPK--LL--DLIKSTDAFKVILCV 211 (235)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHTTTTGGGTSCHHHHHHHHHHHHHTSCTTHHHH--HH--HHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhccCHHHHHHHHHHHHHHhcCCCCCC--Cc--chhhcCCHHHHHHHH
Confidence 34555556678889999999999988776555556667789999999999985532220 10 11 356777887776
Q ss_pred H-HhHhc
Q 011310 481 C-ILNGL 486 (489)
Q Consensus 481 ~-IL~tL 486 (489)
. |+...
T Consensus 212 ~~i~~ly 218 (235)
T 1zp2_A 212 QRIISIY 218 (235)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6 66543
No 26
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=64.80 E-value=5.6 Score=38.57 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=53.5
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHh-ccCCHHHHHHHH
Q 011310 402 NWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS-ETYTRDHMLRMV 480 (489)
Q Consensus 402 DWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~-naYTkeqIL~ME 480 (489)
++|...+..+++..++..+|..++..-+....+-...-..||++|+++|++...... ... .. -.++.++|..+-
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W--~~~~~~~~~~l~~~~ 233 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYPPFMIALACLHVACVVQQKDA---RQW--FAELSVDMEKILEII 233 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSCHHHHHHHHHHHHHHHTTCCC---HHH--HHTSCSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccCHHHHHHHHHHHHHHHcCCCh---hhH--HHHHCCCHHHHHHHH
Confidence 456666677778888899999998887654444455567799999999999855321 121 22 446777777666
Q ss_pred H-HhHh
Q 011310 481 C-ILNG 485 (489)
Q Consensus 481 ~-IL~t 485 (489)
. ||..
T Consensus 234 ~~il~l 239 (285)
T 3rgf_B 234 RVILKL 239 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 6 6543
No 27
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=63.57 E-value=1.5 Score=44.05 Aligned_cols=55 Identities=7% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCcc
Q 011310 402 NWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDF 456 (489)
Q Consensus 402 DWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi 456 (489)
++|...+..++|+.++..+|..|+.+.+....+....-.-|+++|++||+.+...
T Consensus 237 ~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~l~~Gr~P~~IAaAaIylAa~~~~~ 291 (345)
T 3k7a_M 237 TYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhchhcCCCHHHHHHHHHHHHHHHHCC
Confidence 6788899999999999999999999988765566677788999999999998543
No 28
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=62.80 E-value=5.7 Score=38.10 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=46.8
Q ss_pred HHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCc--cCCCCHHH
Q 011310 402 NWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYED--FWHPRVKD 463 (489)
Q Consensus 402 DWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEE--i~pP~L~d 463 (489)
+||...+...+++.++..+|..+++.-+....+-...-..||++|+++|.+.-+ .|.+.+.+
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~ 203 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQH 203 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 566667777888888888999999988766556666677899999999998743 45554443
No 29
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=56.97 E-value=18 Score=34.23 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=50.1
Q ss_pred HHHHHhhhcccchhHH----HHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCC----HHHHHHHhccCCHH
Q 011310 403 WLIEVHLKFDLMPETL----YLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPR----VKDLISISETYTRD 474 (489)
Q Consensus 403 WLiEV~~kFkLs~ETL----fLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~----L~dLV~I~naYTke 474 (489)
||......++++.+++ .+|..+++.-+....+-...-..||++|+++|.+.....+.. ...+..+ -.|+.+
T Consensus 155 fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~-tg~~~~ 233 (254)
T 2f2c_A 155 FLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI-LNFSTN 233 (254)
T ss_dssp SHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHH-HTCCHH
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH-HCcCHH
Confidence 3444444555655543 356677776555445556667889999999999985222222 2333332 457888
Q ss_pred HHHHHHH-HhHh
Q 011310 475 HMLRMVC-ILNG 485 (489)
Q Consensus 475 qIL~ME~-IL~t 485 (489)
+|...=. |...
T Consensus 234 ~l~~c~~~i~~~ 245 (254)
T 2f2c_A 234 TVRTVKDQVSEA 245 (254)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 8887766 5544
No 30
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=56.79 E-value=19 Score=34.02 Aligned_cols=85 Identities=11% Similarity=-0.062 Sum_probs=51.7
Q ss_pred HHHHHHHhhhcccchhH----HHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCC----CCHHHHHHHhccCC
Q 011310 401 INWLIEVHLKFDLMPET----LYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWH----PRVKDLISISETYT 472 (489)
Q Consensus 401 IDWLiEV~~kFkLs~ET----LfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~p----P~L~dLV~I~naYT 472 (489)
.+||...+..++++.++ ..+|..+++.-+....+-...-..||++|+++|.+.-...+ +.....+.-.-.|+
T Consensus 152 ~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~ 231 (257)
T 1g3n_C 152 TDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCD 231 (257)
T ss_dssp HHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcC
Confidence 34555555566666554 24566777766554445556677899999999998865421 22222221114678
Q ss_pred HHHHHHHHH-HhHh
Q 011310 473 RDHMLRMVC-ILNG 485 (489)
Q Consensus 473 keqIL~ME~-IL~t 485 (489)
.++|..+=. |+..
T Consensus 232 ~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 232 VSVLQAAVEQILTS 245 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 888887755 5544
No 31
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=55.77 E-value=17 Score=35.80 Aligned_cols=84 Identities=11% Similarity=0.006 Sum_probs=48.7
Q ss_pred HHHHHhhhcccchhH----HHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHH-Hh--ccCCHHH
Q 011310 403 WLIEVHLKFDLMPET----LYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLIS-IS--ETYTRDH 475 (489)
Q Consensus 403 WLiEV~~kFkLs~ET----LfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~-I~--naYTkeq 475 (489)
||......+++..+. ...|.++++..|....+-...-..||++|+++|.+.-+..++....+.. +. -.|+.++
T Consensus 174 fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~ 253 (306)
T 3g33_B 174 FLAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDC 253 (306)
T ss_dssp GHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHH
Confidence 333444444444332 2345566665555555556667789999999999986654433233322 22 5678888
Q ss_pred HHHHHH-HhHhc
Q 011310 476 MLRMVC-ILNGL 486 (489)
Q Consensus 476 IL~ME~-IL~tL 486 (489)
|..+-. |+..+
T Consensus 254 l~~c~~~I~~l~ 265 (306)
T 3g33_B 254 LRACQEQIEAAL 265 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 887766 66543
No 32
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=49.28 E-value=16 Score=34.66 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=53.2
Q ss_pred HHHHHHHhhhcccch-hHHHHHHHHHHHhhhccc-cCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHhccCCHHHHHH
Q 011310 401 INWLIEVHLKFDLMP-ETLYLMVILLDRYLSEVK-IKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHMLR 478 (489)
Q Consensus 401 IDWLiEV~~kFkLs~-ETLfLAVnLLDRYLS~~~-V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~naYTkeqIL~ 478 (489)
.+||...+..+++.. ++..+|..+++.-+.... +-...-..||++|+++|++.-+. ++-...+..+ -.|+.++|..
T Consensus 140 ~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~-~g~~~~~i~~ 217 (260)
T 2cch_B 140 NQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRK-TGYTLESLKP 217 (260)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHH-HCCCHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHH-hCcCHHHHHH
Confidence 467777777777765 667788888877554333 45556678999999999987443 2222233322 4577888877
Q ss_pred HHH-HhH
Q 011310 479 MVC-ILN 484 (489)
Q Consensus 479 ME~-IL~ 484 (489)
.=. |+.
T Consensus 218 ~~~~l~~ 224 (260)
T 2cch_B 218 CLMDLHQ 224 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 655 544
No 33
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=48.12 E-value=3.8 Score=41.33 Aligned_cols=57 Identities=7% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCcc
Q 011310 400 LINWLIEVHLKFDLMPETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDF 456 (489)
Q Consensus 400 LIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi 456 (489)
..++|...|..++|+.++...|..|+.+.....-.....-.=|+++||++|+.+...
T Consensus 235 p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~ 291 (345)
T 4bbr_M 235 NLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQI 291 (345)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCC
Confidence 347888899999999999999999999988765556667778999999999998543
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=45.35 E-value=18 Score=34.43 Aligned_cols=85 Identities=15% Similarity=0.054 Sum_probs=48.8
Q ss_pred HHHHHHhhhcccchhHH----HHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCcc-------CCCCHHHHHHHhcc
Q 011310 402 NWLIEVHLKFDLMPETL----YLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDF-------WHPRVKDLISISET 470 (489)
Q Consensus 402 DWLiEV~~kFkLs~ETL----fLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi-------~pP~L~dLV~I~na 470 (489)
+||......+++..++. ..|..+++..+....+-...-..||++|+++|...-+. |.+...+.+.-.-.
T Consensus 159 ~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~ 238 (271)
T 2w96_A 159 DFIEHFLSKMPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIK 238 (271)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHC
Confidence 55666666677766653 24555665443322233445567999999999876332 22332332221145
Q ss_pred CCHHHHHHHHH-HhHhc
Q 011310 471 YTRDHMLRMVC-ILNGL 486 (489)
Q Consensus 471 YTkeqIL~ME~-IL~tL 486 (489)
|+.++|...=. |+..+
T Consensus 239 v~~~~l~~c~~~i~~l~ 255 (271)
T 2w96_A 239 CDPDCLRACQEQIEALL 255 (271)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 67888887766 66654
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=37.54 E-value=20 Score=35.42 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCH-HHHHHHh-ccCCHHHHHHHHH
Q 011310 415 PETLYLMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRV-KDLISIS-ETYTRDHMLRMVC 481 (489)
Q Consensus 415 ~ETLfLAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L-~dLV~I~-naYTkeqIL~ME~ 481 (489)
.+...+|..++..-+....+-...-..||++|+++|++......|.. ..+.... ..|+.++|+..=.
T Consensus 185 ~~l~~~A~~~l~~sl~t~~~l~~~Ps~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~ 253 (323)
T 1jkw_A 185 EILRKTADDFLNRIALTDAYLLYTPSQIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMK 253 (323)
T ss_dssp HHHHHHHHHHHHHHTTSTHHHHSCHHHHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHcCCHHHHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHH
Confidence 34556777777765443333344556799999999999855443332 2222222 3455566555544
No 36
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=35.56 E-value=9.7 Score=34.06 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=26.7
Q ss_pred eEehhhhhhhhhccCccCCCCHHHHHHHhccCCHHHHH
Q 011310 440 QLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHML 477 (489)
Q Consensus 440 QLVGiTCLfIASKyEEi~pP~L~dLV~I~naYTkeqIL 477 (489)
.|+-++|-++|..+....+-.++.+..|.+-||.++-.
T Consensus 112 ~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~ 149 (160)
T 2p1m_A 112 NLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEE 149 (160)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHH
Confidence 36888999999999776554455555444678877643
No 37
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=33.56 E-value=76 Score=30.93 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHhhhc---cccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHh
Q 011310 400 LINWLIEVHLKFDLMPETLYLMVILLDRYLSE---VKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISIS 468 (489)
Q Consensus 400 LIDWLiEV~~kFkLs~ETLfLAVnLLDRYLS~---~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~ 468 (489)
+.+.|+.++.+-.++.-+|--||.+--.|.-. ....-++-|=|+++||+||+-- -..|..+.++..+-
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~q~dVAAAc~miAae~-~~~PiplaE~r~lD 85 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVERQPDVAAACLMIAAEE-AQQPLPLAEVRCLD 85 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHC
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHHHHHHH-cCCCccHHHHHHHh
Confidence 45667899999999999999999999988863 2355666788999999999963 23477788876665
No 38
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=32.04 E-value=17 Score=32.17 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=35.6
Q ss_pred cccchhHHHH---HHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHhccCCHHHH
Q 011310 411 FDLMPETLYL---MVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHM 476 (489)
Q Consensus 411 FkLs~ETLfL---AVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~naYTkeqI 476 (489)
+.+..+++|- |-+|||- -.|+-++|-++|..+....+-.++.+..|.+-||.++-
T Consensus 92 ~~id~~~l~eLl~AAnyL~I-----------~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe 149 (159)
T 2ast_A 92 LKVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEE 149 (159)
T ss_dssp TCSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHH
T ss_pred HcCCHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHH
Confidence 3566666543 4444442 23688899999999987665555555554466887754
No 39
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=28.99 E-value=20 Score=31.39 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhcccchhHHH---HHHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHH
Q 011310 400 LINWLIEVHLKFDLMPETLY---LMVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLI 465 (489)
Q Consensus 400 LIDWLiEV~~kFkLs~ETLf---LAVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV 465 (489)
+-+|=.+ .+++.++++| +|-+|||- -.|+-++|-++|..+....|-.++.+.
T Consensus 79 i~~wD~~---F~~vd~~~l~eLi~AAnyL~I-----------~~Lldl~c~~vA~~ikgkt~eeiR~~f 133 (141)
T 1fs1_B 79 IPVWDQE---FLKVDQGTLFELILAANYLDI-----------KGLLDVTCKTVANMIKGKTPEEIRKTF 133 (141)
T ss_dssp --HHHHH---HTCSCHHHHHHHHHHHHHHTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred hhHHHHH---HHhCCHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHcCCCHHHHHHHc
Confidence 4455433 2467777765 35555553 246788899999988765544444443
No 40
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=27.35 E-value=28 Score=31.48 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=37.2
Q ss_pred cccchhHHHH---HHHHHHHhhhccccCCCCeeEehhhhhhhhhccCccCCCCHHHHHHHhccCCHHHHH
Q 011310 411 FDLMPETLYL---MVILLDRYLSEVKIKKNEMQLVGLTSLLLASKYEDFWHPRVKDLISISETYTRDHML 477 (489)
Q Consensus 411 FkLs~ETLfL---AVnLLDRYLS~~~V~r~kLQLVGiTCLfIASKyEEi~pP~L~dLV~I~naYTkeqIL 477 (489)
+++.+++||- |-+|||- -.|+-++|-.+|..+....|-.++.+..|-+-||.++-.
T Consensus 99 l~vd~~~LfeLi~AAnyLdI-----------k~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~ 157 (169)
T 3v7d_A 99 LKVDQEMLYEIILAANYLNI-----------KPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEA 157 (169)
T ss_dssp TCSCHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHH
Confidence 4577777653 4444442 246888999999998877665566655555779988643
Done!