BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011313
(489 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
K+ YE+LG+ K EIR AYK+LA++ HPD+ EA A+F+E+ AYEVL+
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR----NQGDKEAEAKFKEIKEAYEVLT 57
Query: 65 DPKERAWYDSH 75
D ++RA YD +
Sbjct: 58 DSQKRAAYDQY 68
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAY 60
+++ LY VLGL K T+D+I+ +Y+KLAL+ HPDK EA +F+E+ +A+
Sbjct: 12 LSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDK----NPDNPEAADKFKEINNAH 67
Query: 61 EVLSDPKERAWYDSHRSQILF 81
+L+D +R YD + S L+
Sbjct: 68 AILTDATKRNIYDKYGSLGLY 88
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
K+ YE+LG+ K EIR AYK+LA++ HPD+ EA A+F+E+ AYEVL+
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR----NQGDKEAEAKFKEIKEAYEVLT 57
Query: 65 DPKERAWYDSH 75
D ++RA YD +
Sbjct: 58 DSQKRAAYDQY 68
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
K+ YE+LG+ K EIR AYK+LA++ HPD+ EA A+F+E+ AYEVL+
Sbjct: 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDR----NQGDKEAEAKFKEIKEAYEVLT 57
Query: 65 DPKERAWYDSH 75
D ++RA YD +
Sbjct: 58 DSQKRAAYDQY 68
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 7/65 (10%)
Query: 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
Y+VLG++ + + +E++ AY+K+AL+ HPDK + QF+++ AYEVLSD K+
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDK-------NPDGAEQFKQISQAYEVLSDEKK 63
Query: 69 RAWYD 73
R YD
Sbjct: 64 RQIYD 68
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 7/67 (10%)
Query: 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66
Y+VLG++ T +E++ AY+KLAL+ HPDK G +F+++ AYEVLSD
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEG-------EKFKQISQAYEVLSDA 59
Query: 67 KERAWYD 73
K+R YD
Sbjct: 60 KKRELYD 66
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
YEVL + ++ +++ I+ AY+KLAL+ HPDK + ++ EA +F+++ AYEVLSD K+
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE---NKEEAERRFKQVAEAYEVLSDAKK 68
Query: 69 RAWYDSHRS 77
R YD + S
Sbjct: 69 RDIYDRYGS 77
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
YEVLG++ + ++I+ AY+KLAL+ HPDK + ++ EA +F+ + AYEVLSD K+
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDK---NPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 69 RAWYD 73
R+ YD
Sbjct: 69 RSLYD 73
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
Y+ LGL + + +EI+ AY++ AL+ HPDK + G A +F+E+ AY+VLSDP++
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPG-----AEEKFKEIAEAYDVLSDPRK 60
Query: 69 RAWYDSH 75
R +D +
Sbjct: 61 REIFDRY 67
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 5/65 (7%)
Query: 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
YE+LG+ + + ++++ AY++LAL+ HPDK G AT F+ + AY VLS+P++
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPG-----ATEAFKAIGTAYAVLSNPEK 64
Query: 69 RAWYD 73
R YD
Sbjct: 65 RKQYD 69
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
S+KR Y++LG+++ EI AY+KLALQ HPD Q+ + +A +F ++ A EV
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEV 437
Query: 63 LSDPKERAWYD 73
LSDP+ R +D
Sbjct: 438 LSDPEXRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
S+KR Y++LG+++ EI AY+KLALQ HPD Q+ + +A +F ++ A EV
Sbjct: 379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF-QNEEEKKKAEKKFIDIAAAKEV 437
Query: 63 LSDPKERAWYD 73
LSDP+ R +D
Sbjct: 438 LSDPEMRKKFD 448
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
Y++LG+ K + +I+ A+ KLA++ HPDK +A A+F+E+ AYE LSD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDK-----NKSPDAEAKFREIAEAYETLSDANR 64
Query: 69 RAWYDS 74
R YD+
Sbjct: 65 RKEYDT 70
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query: 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66
YE+L + + + D+I+ AY++ ALQ HPDK ++ A +F+E+ AYEVLSD
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPD---NKEFAEKKFKEVAEAYEVLSDK 59
Query: 67 KERAWYDSHRSQILFSDLNSASNCGP 92
+R YD + + L + + GP
Sbjct: 60 HKREIYDRYGREGL-----TGTGTGP 80
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 8 LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
LY++LG+ E++ Y+K AL+ HPDK T +F+E+ A+E+L+DP+
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-------TEKFKEISEAFEILNDPQ 62
Query: 68 ERAWYDSH 75
+R YD +
Sbjct: 63 KREIYDQY 70
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
Y++LG+ + + EI+ AY +LA + HPD + +A +F +L AYEVLSD +
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPD----TNKDDPKAKEKFSQLAEAYEVLSDEVK 65
Query: 69 RAWYDSHRS 77
R YD++ S
Sbjct: 66 RKQYDAYGS 74
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 8 LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
Y +LG+ K ++ EIR A+KKLAL+ HPDK + A F ++ AYEVL D
Sbjct: 4 FYSLLGVSKTASSREIRQAFKKLALKLHPDK----NPNNPNAHGDFLKINRAYEVLKDED 59
Query: 68 ERAWYDSH 75
R YD +
Sbjct: 60 LRKKYDKY 67
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 8 LYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67
Y +LG+ K ++ EIR A+KKLAL+ HPDK + A F ++ AYEVL D
Sbjct: 23 FYSLLGVSKTASSREIRQAFKKLALKLHPDK----NPNNPNAHGDFLKINRAYEVLKDED 78
Query: 68 ERAWYDSH 75
R YD +
Sbjct: 79 LRKKYDKY 86
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
Y VLG+ + + +I+ AYKKLA + HPDK G A +F ++ AYE+LS+ ++
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG-----AEDRFIQISKAYEILSNEEK 74
Query: 69 RAWYDSHRS 77
R YD + S
Sbjct: 75 RTNYDHYGS 83
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEV 62
SE + Y ++G++ I++AY++LA + HPD + +A A+F+E+ A+EV
Sbjct: 2 SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD-----VSKEPDAEARFKEVAEAWEV 56
Query: 63 LSDPKERAWYD 73
LSD + RA YD
Sbjct: 57 LSDEQRRAEYD 67
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 5/72 (6%)
Query: 2 ASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE 61
A E + Y +LG++ I++AY++LA + HPD ++ +A A+F++L A+E
Sbjct: 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-----DAEAKFKDLAEAWE 78
Query: 62 VLSDPKERAWYD 73
VL D + RA YD
Sbjct: 79 VLKDEQRRAEYD 90
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVL 63
+++LG++ + DE+ AY+KLA+ HPDK V G A F+ +V+A L
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDA-----FKAVVNARTAL 79
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64
+ LY++LG+ T +I++AY + HPD+ SG AEA +F + AY VL
Sbjct: 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDR--NSG--SAEAAERFTRISQAYVVLG 71
Query: 65 DPKERAWYD 73
R YD
Sbjct: 72 SATLRRKYD 80
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKE 68
Y +LG + + ++I + +K AL+ HPDK ++ +A FQ+L A E+L++ +
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPEN----PKAVETFQKLQKAKEILTNEES 78
Query: 69 RAWYDSHR 76
RA YD R
Sbjct: 79 RARYDHWR 86
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKL---VQSGLSQAEATAQFQELVHAYEVLSD 65
Y +LG +++ Y+KL L HPDK V +G + E +F E+ A+++L +
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVE-ECVQKFIEIDQAWKILGN 71
Query: 66 PKERAWYDSHRSQILFSDLNSASNCGPV 93
+ + YD R + + N GPV
Sbjct: 72 EETKREYDLQRCE------DDLRNVGPV 93
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 35.0 bits (79), Expect = 0.088, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKL---VQSGLSQAEATAQFQELVHAYE 61
K+ Y +LG +++ Y+KL L HPDK V +G + E +F E+ A++
Sbjct: 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAG-TMEECMQKFIEIDQAWK 73
Query: 62 VLSDPKERAWYDSHRS 77
+L + + + YD RS
Sbjct: 74 ILGNEETKKKYDLQRS 89
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 1 MASEKRC----LYEVLGL-RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQE 55
A E C Y+VL + R+E ++ AY+ LA + HPD+ V++ + A +F+
Sbjct: 6 FAPELYCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDR-VKNKEEKLLAEERFRV 64
Query: 56 LVHAYEVLSDPKERAWYDSH 75
+ AYE L D + + YD +
Sbjct: 65 IATAYETLKDDEAKTNYDYY 84
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 23 IRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY 72
+R Y++L Q HPD + Q G Q+ Q AY L DP R+ Y
Sbjct: 27 LRKEYRQLQAQHHPD-MAQQGSEQSSTLNQ------AYHTLKDPLRRSQY 69
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 23 IRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY 72
+R Y++L Q HPD + Q G Q+ Q AY L DP R+ Y
Sbjct: 35 LRKEYRQLQAQHHPD-MAQQGSEQSSTLNQ------AYHTLKDPLRRSQY 77
>pdb|1FPO|A Chain A, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|B Chain B, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
pdb|1FPO|C Chain C, Hsc20 (Hscb), A J-Type Co-Chaperone From E. Coli
Length = 171
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 9 YEVLGL--RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQE---LVHAYEVL 63
+ + GL R + T + ++ L Q HPDK SG SQAE A Q+ + A++ L
Sbjct: 4 FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFA-SG-SQAEQLAAVQQSATINQAWQTL 61
Query: 64 SDPKERAWY 72
P RA Y
Sbjct: 62 RHPLMRAEY 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,374,868
Number of Sequences: 62578
Number of extensions: 464039
Number of successful extensions: 1018
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 42
length of query: 489
length of database: 14,973,337
effective HSP length: 103
effective length of query: 386
effective length of database: 8,527,803
effective search space: 3291731958
effective search space used: 3291731958
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)