Query 011313
Match_columns 489
No_of_seqs 325 out of 2311
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 23:57:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0717 Molecular chaperone (D 100.0 2.1E-59 4.4E-64 483.9 24.8 378 3-436 5-454 (508)
2 COG0484 DnaJ DnaJ-class molecu 99.9 7.2E-23 1.6E-27 211.5 8.7 73 5-81 3-75 (371)
3 KOG0713 Molecular chaperone (D 99.9 6.4E-22 1.4E-26 200.4 8.6 95 4-102 14-108 (336)
4 COG5269 ZUO1 Ribosome-associat 99.8 2.9E-19 6.3E-24 176.0 10.4 160 5-166 42-244 (379)
5 KOG0712 Molecular chaperone (D 99.8 1.7E-19 3.6E-24 184.4 8.8 76 5-87 3-78 (337)
6 PRK14296 chaperone protein Dna 99.8 2.9E-19 6.2E-24 186.7 9.0 72 5-81 3-74 (372)
7 PRK14288 chaperone protein Dna 99.8 2.9E-19 6.2E-24 186.5 7.1 73 5-81 2-74 (369)
8 PRK14286 chaperone protein Dna 99.7 2.2E-18 4.8E-23 180.0 7.7 73 5-81 3-75 (372)
9 PRK14287 chaperone protein Dna 99.7 2.6E-18 5.6E-23 179.5 7.3 72 5-81 3-74 (371)
10 PTZ00341 Ring-infected erythro 99.7 5.5E-18 1.2E-22 189.7 8.7 74 4-82 571-644 (1136)
11 PRK14298 chaperone protein Dna 99.7 6.5E-18 1.4E-22 176.8 7.8 72 5-81 4-75 (377)
12 PTZ00037 DnaJ_C chaperone prot 99.7 6E-18 1.3E-22 179.3 6.7 69 5-81 27-95 (421)
13 PRK14276 chaperone protein Dna 99.7 7.5E-18 1.6E-22 176.4 7.1 72 5-81 3-74 (380)
14 PRK14282 chaperone protein Dna 99.7 1.2E-17 2.7E-22 174.2 8.6 73 5-80 3-75 (369)
15 PRK14297 chaperone protein Dna 99.7 1.4E-17 3E-22 174.4 7.9 73 5-81 3-75 (380)
16 PRK14285 chaperone protein Dna 99.7 1.4E-17 3E-22 173.6 7.5 73 5-81 2-74 (365)
17 PRK14277 chaperone protein Dna 99.7 1.7E-17 3.6E-22 174.2 8.0 73 5-81 4-76 (386)
18 PRK14278 chaperone protein Dna 99.7 1.8E-17 3.8E-22 173.6 7.5 68 6-78 3-70 (378)
19 PRK14280 chaperone protein Dna 99.7 1.8E-17 3.9E-22 173.4 7.3 72 5-81 3-74 (376)
20 PRK14294 chaperone protein Dna 99.7 2.1E-17 4.6E-22 172.3 7.7 73 5-81 3-75 (366)
21 PRK10767 chaperone protein Dna 99.7 3.7E-17 7.9E-22 170.7 8.4 73 5-81 3-75 (371)
22 PRK14279 chaperone protein Dna 99.7 3E-17 6.5E-22 172.6 7.1 70 5-78 8-77 (392)
23 PRK14301 chaperone protein Dna 99.7 5.3E-17 1.1E-21 169.8 8.5 73 5-81 3-75 (373)
24 PRK14283 chaperone protein Dna 99.7 4.6E-17 1E-21 170.4 7.0 71 5-80 4-74 (378)
25 PRK14295 chaperone protein Dna 99.7 8.8E-17 1.9E-21 168.9 8.9 71 6-80 9-83 (389)
26 PRK14299 chaperone protein Dna 99.7 1.2E-16 2.5E-21 162.0 9.2 70 5-79 3-72 (291)
27 PRK14291 chaperone protein Dna 99.7 9E-17 1.9E-21 168.5 8.0 71 5-80 2-72 (382)
28 KOG0718 Molecular chaperone (D 99.7 5.3E-17 1.1E-21 169.7 6.1 77 4-81 7-83 (546)
29 PRK14290 chaperone protein Dna 99.7 8.9E-17 1.9E-21 167.6 7.8 72 6-80 3-74 (365)
30 PRK14281 chaperone protein Dna 99.7 1E-16 2.3E-21 168.8 7.6 73 5-81 2-74 (397)
31 PRK14284 chaperone protein Dna 99.7 1.4E-16 3.1E-21 167.4 8.6 72 6-81 1-72 (391)
32 TIGR02349 DnaJ_bact chaperone 99.7 9.4E-17 2E-21 166.5 6.9 70 7-81 1-70 (354)
33 PF00226 DnaJ: DnaJ domain; I 99.6 2E-16 4.4E-21 124.6 6.0 64 7-73 1-64 (64)
34 KOG0691 Molecular chaperone (D 99.6 2.6E-16 5.7E-21 159.3 7.0 73 5-81 4-76 (296)
35 PRK14300 chaperone protein Dna 99.6 2.2E-16 4.7E-21 165.1 6.4 71 6-81 3-73 (372)
36 PRK14289 chaperone protein Dna 99.6 4.1E-16 9E-21 163.6 8.4 72 5-80 4-75 (386)
37 PRK14292 chaperone protein Dna 99.6 3.5E-16 7.6E-21 163.3 7.0 69 6-79 2-70 (371)
38 PRK14293 chaperone protein Dna 99.6 4.1E-16 8.9E-21 163.1 6.5 71 6-81 3-73 (374)
39 KOG0716 Molecular chaperone (D 99.6 6.2E-16 1.3E-20 153.0 6.1 73 5-81 30-102 (279)
40 KOG0719 Molecular chaperone (D 99.6 8.2E-16 1.8E-20 149.2 5.9 72 4-77 12-83 (264)
41 KOG0715 Molecular chaperone (D 99.6 1.3E-15 2.8E-20 154.4 7.3 71 4-79 41-111 (288)
42 PRK10266 curved DNA-binding pr 99.6 1.2E-15 2.5E-20 155.7 6.6 68 5-77 3-70 (306)
43 KOG0624 dsRNA-activated protei 99.6 4.2E-15 9.2E-20 151.6 7.2 74 3-77 391-464 (504)
44 smart00271 DnaJ DnaJ molecular 99.5 1.2E-14 2.6E-19 112.6 6.8 59 6-67 1-59 (60)
45 COG2214 CbpA DnaJ-class molecu 99.5 1.6E-14 3.4E-19 134.9 6.9 73 1-76 1-73 (237)
46 cd06257 DnaJ DnaJ domain or J- 99.5 2.8E-14 6.2E-19 108.5 6.5 55 7-65 1-55 (55)
47 TIGR03835 termin_org_DnaJ term 99.5 2.7E-14 5.9E-19 157.5 5.8 70 6-80 2-71 (871)
48 PHA03102 Small T antigen; Revi 99.4 7.1E-14 1.5E-18 129.5 4.7 66 6-79 5-72 (153)
49 PRK01356 hscB co-chaperone Hsc 99.4 3.1E-13 6.6E-18 127.0 6.4 72 5-77 1-74 (166)
50 PRK05014 hscB co-chaperone Hsc 99.4 8.1E-13 1.8E-17 124.7 7.2 71 6-76 1-74 (171)
51 PRK03578 hscB co-chaperone Hsc 99.4 1.1E-12 2.4E-17 124.4 7.6 76 1-76 1-79 (176)
52 KOG0721 Molecular chaperone (D 99.3 1.1E-12 2.3E-17 126.6 6.3 70 4-77 97-166 (230)
53 KOG0550 Molecular chaperone (D 99.3 1.7E-12 3.8E-17 135.0 5.8 72 3-77 370-441 (486)
54 PRK00294 hscB co-chaperone Hsc 99.3 5.3E-12 1.1E-16 119.4 8.0 74 4-77 2-78 (173)
55 KOG0714 Molecular chaperone (D 99.2 4.3E-12 9.3E-17 124.3 4.6 75 5-82 2-76 (306)
56 KOG0720 Molecular chaperone (D 99.2 6.4E-12 1.4E-16 132.0 5.4 67 5-76 234-300 (490)
57 PRK09430 djlA Dna-J like membr 99.1 5.1E-11 1.1E-15 119.8 6.5 60 6-65 200-262 (267)
58 KOG0722 Molecular chaperone (D 99.1 2.8E-11 6.2E-16 119.1 3.0 69 4-77 31-99 (329)
59 PTZ00100 DnaJ chaperone protei 99.1 1.3E-10 2.9E-15 103.1 4.5 52 5-64 64-115 (116)
60 KOG1150 Predicted molecular ch 99.0 1.3E-08 2.9E-13 97.4 14.4 68 4-74 51-118 (250)
61 PHA02624 large T antigen; Prov 98.9 5.6E-10 1.2E-14 122.4 5.0 60 5-72 10-71 (647)
62 PRK01773 hscB co-chaperone Hsc 98.9 1.7E-09 3.7E-14 102.5 6.9 73 5-77 1-76 (173)
63 COG5407 SEC63 Preprotein trans 98.8 6.5E-09 1.4E-13 109.3 4.7 73 5-77 97-170 (610)
64 TIGR00714 hscB Fe-S protein as 98.7 1.7E-08 3.8E-13 94.2 6.8 61 17-77 2-63 (157)
65 PF12171 zf-C2H2_jaz: Zinc-fin 98.6 2.9E-08 6.2E-13 66.1 1.9 26 224-249 2-27 (27)
66 smart00451 ZnF_U1 U1-like zinc 98.2 7.8E-07 1.7E-11 62.0 2.4 32 223-254 3-34 (35)
67 PF12874 zf-met: Zinc-finger o 98.1 1.9E-06 4.1E-11 55.9 2.1 25 224-248 1-25 (25)
68 KOG0568 Molecular chaperone (D 97.9 1.3E-05 2.8E-10 78.7 4.8 55 7-66 48-103 (342)
69 KOG3408 U1-like Zn-finger-cont 97.8 1E-05 2.3E-10 72.0 1.9 37 221-257 55-91 (129)
70 KOG1789 Endocytosis protein RM 97.8 2.7E-05 5.8E-10 89.0 5.6 51 7-64 1282-1336(2235)
71 KOG2785 C2H2-type Zn-finger pr 97.2 0.00032 6.8E-09 73.3 3.7 39 219-257 64-102 (390)
72 KOG0723 Molecular chaperone (D 97.2 0.0006 1.3E-08 59.8 4.9 49 10-66 60-108 (112)
73 COG5112 UFD2 U1-like Zn-finger 96.9 0.00059 1.3E-08 59.8 2.3 38 221-258 53-90 (126)
74 KOG3192 Mitochondrial J-type c 96.6 0.0021 4.6E-08 60.0 4.1 72 5-76 7-81 (168)
75 PF06220 zf-U1: U1 zinc finger 96.6 0.0015 3.3E-08 47.2 2.5 32 223-254 3-36 (38)
76 KOG4727 U1-like Zn-finger prot 96.2 0.0026 5.7E-08 60.1 2.4 35 221-255 73-107 (193)
77 KOG0431 Auxilin-like protein a 96.2 0.0061 1.3E-07 66.1 5.1 50 13-62 395-447 (453)
78 KOG0724 Zuotin and related mol 96.1 0.03 6.5E-07 57.9 9.5 141 17-157 3-188 (335)
79 PF00096 zf-C2H2: Zinc finger, 95.7 0.0069 1.5E-07 38.2 1.9 22 224-245 1-22 (23)
80 COG1076 DjlA DnaJ-domain-conta 95.7 0.0086 1.9E-07 56.8 3.3 58 6-63 113-173 (174)
81 PLN02748 tRNA dimethylallyltra 95.6 0.0093 2E-07 65.0 3.4 36 222-257 417-453 (468)
82 COG1076 DjlA DnaJ-domain-conta 94.9 0.018 3.9E-07 54.6 2.8 70 7-76 2-74 (174)
83 PF13912 zf-C2H2_6: C2H2-type 94.5 0.022 4.9E-07 37.2 1.6 23 223-245 1-23 (27)
84 PF13894 zf-C2H2_4: C2H2-type 94.4 0.025 5.5E-07 35.1 1.7 22 224-245 1-22 (24)
85 COG5188 PRP9 Splicing factor 3 93.6 0.034 7.3E-07 58.0 1.7 37 221-257 236-272 (470)
86 KOG3032 Uncharacterized conser 92.7 0.099 2.1E-06 51.8 3.3 36 221-257 33-68 (264)
87 PF12756 zf-C2H2_2: C2H2 type 92.7 0.039 8.4E-07 45.8 0.4 31 223-253 50-80 (100)
88 smart00355 ZnF_C2H2 zinc finge 91.5 0.15 3.3E-06 31.7 2.1 21 224-244 1-21 (26)
89 KOG2837 Protein containing a U 90.2 0.082 1.8E-06 53.5 -0.1 35 223-257 25-59 (309)
90 PF07535 zf-DBF: DBF zinc fing 90.1 0.17 3.8E-06 38.7 1.6 27 223-252 5-31 (49)
91 smart00586 ZnF_DBF Zinc finger 89.3 0.23 4.9E-06 38.1 1.7 30 221-253 3-32 (49)
92 PHA02768 hypothetical protein; 87.5 0.34 7.4E-06 38.0 1.6 25 223-249 5-29 (55)
93 KOG3454 U1 snRNP-specific prot 85.7 0.94 2E-05 42.9 3.8 40 223-262 3-44 (165)
94 PHA00616 hypothetical protein 82.4 0.67 1.5E-05 34.8 1.2 22 224-245 2-23 (44)
95 PF04959 ARS2: Arsenite-resist 81.0 1.6 3.4E-05 43.3 3.5 37 222-259 76-112 (214)
96 PF03656 Pam16: Pam16; InterP 80.3 3 6.4E-05 38.1 4.8 49 9-65 61-109 (127)
97 PF13913 zf-C2HC_2: zinc-finge 74.9 2.4 5.2E-05 27.8 1.9 21 224-245 3-23 (25)
98 KOG1029 Endocytic adaptor prot 71.0 24 0.00053 41.0 9.7 18 14-31 184-201 (1118)
99 KOG0227 Splicing factor 3a, su 68.6 3.6 7.8E-05 40.1 2.3 37 221-257 51-87 (222)
100 COG5246 PRP11 Splicing factor 64.9 3.8 8.2E-05 39.6 1.7 35 221-255 51-85 (222)
101 KOG2384 Major histocompatibili 63.8 1.9 4.1E-05 42.2 -0.6 36 220-256 81-116 (223)
102 PF13465 zf-H2C2_2: Zinc-finge 59.6 3.8 8.1E-05 26.9 0.5 14 222-235 13-26 (26)
103 PHA00732 hypothetical protein 56.5 7.3 0.00016 32.6 1.8 22 224-245 2-23 (79)
104 KOG0150 Spliceosomal protein F 55.7 15 0.00032 38.3 4.1 37 223-259 10-47 (336)
105 PF14687 DUF4460: Domain of un 51.8 28 0.0006 31.1 4.8 51 16-66 4-54 (112)
106 KOG1994 Predicted RNA binding 51.0 7.9 0.00017 38.7 1.3 24 221-244 237-260 (268)
107 KOG2482 Predicted C2H2-type Zn 50.8 5.7 0.00012 41.9 0.3 32 219-250 191-222 (423)
108 PF10147 CR6_interact: Growth 50.7 1.6E+02 0.0035 29.4 10.3 19 149-167 175-193 (217)
109 PF13446 RPT: A repeated domai 50.5 30 0.00066 27.0 4.4 26 7-32 6-31 (62)
110 COG4049 Uncharacterized protei 49.0 7.5 0.00016 30.9 0.7 23 222-244 16-38 (65)
111 PTZ00448 hypothetical protein; 48.9 14 0.0003 39.4 2.8 37 223-259 314-350 (373)
112 smart00734 ZnF_Rad18 Rad18-lik 47.9 13 0.00028 24.7 1.6 20 224-244 2-21 (26)
113 PF04988 AKAP95: A-kinase anch 46.1 18 0.00039 34.5 2.8 37 224-260 1-37 (165)
114 KOG2893 Zn finger protein [Gen 46.0 9.3 0.0002 38.5 1.0 25 223-247 10-34 (341)
115 PTZ00266 NIMA-related protein 43.9 1.3E+02 0.0027 36.6 9.9 10 226-235 563-572 (1021)
116 KOG2462 C2H2-type Zn-finger pr 42.1 13 0.00028 38.2 1.3 27 221-247 159-185 (279)
117 COG5067 DBF4 Protein kinase es 41.7 8.9 0.00019 41.1 0.1 29 221-252 420-448 (468)
118 PF08790 zf-LYAR: LYAR-type C2 41.0 5.6 0.00012 27.2 -1.0 19 224-243 1-19 (28)
119 PF12269 zf-CpG_bind_C: CpG bi 40.7 39 0.00084 34.1 4.4 18 222-239 83-100 (236)
120 PF14968 CCDC84: Coiled coil p 40.4 16 0.00035 38.6 1.8 32 225-259 1-32 (336)
121 PF05605 zf-Di19: Drought indu 40.0 24 0.00052 26.9 2.2 22 223-245 2-23 (54)
122 PF12756 zf-C2H2_2: C2H2 type 37.7 11 0.00024 31.0 0.0 28 225-253 1-28 (100)
123 KOG2462 C2H2-type Zn-finger pr 36.3 20 0.00043 36.8 1.6 27 222-248 214-240 (279)
124 KOG3623 Homeobox transcription 35.8 11 0.00023 43.5 -0.4 32 221-252 307-338 (1007)
125 KOG4722 Zn-finger protein [Gen 35.6 1.5E+02 0.0033 32.4 8.0 31 225-255 495-525 (672)
126 PHA00733 hypothetical protein 34.9 26 0.00057 31.8 2.0 25 223-248 99-123 (128)
127 PF11931 DUF3449: Domain of un 33.6 78 0.0017 31.1 5.1 34 222-255 100-134 (196)
128 PF11833 DUF3353: Protein of u 33.6 87 0.0019 30.5 5.5 38 15-64 1-38 (194)
129 KOG2785 C2H2-type Zn-finger pr 32.7 34 0.00073 36.7 2.6 37 223-259 3-39 (390)
130 PHA00733 hypothetical protein 31.7 30 0.00065 31.4 1.9 24 222-245 72-95 (128)
131 PF02892 zf-BED: BED zinc fing 31.0 26 0.00056 25.3 1.1 23 222-244 15-41 (45)
132 KOG4848 Extracellular matrix-a 31.0 1.4E+02 0.003 29.5 6.2 19 148-166 185-203 (225)
133 PF04423 Rad50_zn_hook: Rad50 30.7 45 0.00097 25.5 2.4 30 225-257 22-51 (54)
134 PF14968 CCDC84: Coiled coil p 30.5 40 0.00087 35.7 2.8 66 222-287 57-128 (336)
135 KOG0717 Molecular chaperone (D 29.9 2E+02 0.0043 32.0 7.8 41 107-147 177-220 (508)
136 KOG1074 Transcriptional repres 29.3 26 0.00056 41.0 1.2 22 224-245 880-901 (958)
137 KOG2505 Ankyrin repeat protein 28.4 51 0.0011 36.7 3.2 38 220-257 63-100 (591)
138 cd01396 MeCP2_MBD MeCP2, MBD1, 27.9 34 0.00073 28.5 1.4 26 221-246 26-51 (77)
139 PF13821 DUF4187: Domain of un 27.3 33 0.00072 26.9 1.1 22 222-243 26-47 (55)
140 KOG2636 Splicing factor 3a, su 25.4 26 0.00056 38.4 0.3 39 221-259 247-285 (497)
141 PHA00732 hypothetical protein 24.3 27 0.00058 29.2 0.2 21 224-247 28-48 (79)
142 PF05443 ROS_MUCR: ROS/MUCR tr 24.1 39 0.00085 31.1 1.2 23 221-246 70-92 (132)
143 COG5189 SFP1 Putative transcri 22.9 23 0.0005 37.2 -0.6 23 221-243 396-418 (423)
144 cd00122 MBD MeCP2, MBD1, MBD2, 22.8 54 0.0012 25.8 1.6 25 221-245 25-49 (62)
145 KOG3993 Transcription factor ( 22.1 37 0.00079 37.0 0.7 28 222-249 355-382 (500)
146 KOG1074 Transcriptional repres 21.9 37 0.0008 39.8 0.7 22 225-246 355-376 (958)
147 COG5552 Uncharacterized conser 21.5 2.6E+02 0.0057 23.6 5.4 32 6-37 3-34 (88)
148 PLN03086 PRLI-interacting fact 21.2 4.2E+02 0.0091 30.2 8.7 11 127-137 7-17 (567)
149 smart00391 MBD Methyl-CpG bind 20.3 62 0.0013 26.9 1.5 25 221-245 28-52 (77)
No 1
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-59 Score=483.92 Aligned_cols=378 Identities=36% Similarity=0.522 Sum_probs=276.1
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhcc
Q 011313 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS 82 (489)
Q Consensus 3 s~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~~ 82 (489)
..++|||+||||.++|++.+||++||+|||+||||+| |. ..++|+++|++|+.||+|||||+.|+|||+|+.+||++
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDkn--pd-~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~ 81 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKN--PD-RIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRG 81 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCC--Cc-cHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcC
Confidence 3679999999999999999999999999999999998 32 68899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCC---------------------------------------------------
Q 011313 83 DLNSASNCGPVPNLYSYFSNTAFSGYSDS--------------------------------------------------- 111 (489)
Q Consensus 83 ~~~~~~~~~~~~dlf~ff~~~~f~g~~d~--------------------------------------------------- 111 (489)
..... +..+++||.||+.+||.||.++
T Consensus 82 ~~s~~--~~~~~dlf~ff~~~~y~gy~~~~~gfy~vy~dvf~~~~~~e~~~~~d~~~~ap~fg~~~t~ye~~~~fY~~W~ 159 (508)
T KOG0717|consen 82 KNSDT--GVQIEDLFQFFTSSCYIGYENTSAGFYRVYQDVFNALASDELPFLGDSKLLYPLFGYSTTDYEQVVPFYQFWL 159 (508)
T ss_pred CCCcc--ccchHHHHHHhhhhhhcccccccchhHHHHHHHHHHHhhhhhhhccCCccccccccCCCCcHHHHHHHHHHHH
Confidence 76633 4578899999999999988765
Q ss_pred ------------------CCCcccchhhHHHhHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHhHHHHhHHHHHHHHHHHH
Q 011313 112 ------------------GPNRKSRRVMEEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIERKREEEK 173 (489)
Q Consensus 112 ------------------a~~R~~RR~mEkeNkk~r~k~kkeyn~~Ir~Lv~~~kkrDpRv~~~~~~~~~eeerkk~Ee~ 173 (489)
+++|..+|+|+++|+++|..++++||.+||.||.||++|||||+.++.++..+..+.+.++.
T Consensus 160 afsT~Ksf~W~d~Ydv~~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRvk~~l~~k~~E~~r~kqe~~ 239 (508)
T KOG0717|consen 160 AFSTKKSFEWLDEYDVEEESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRVKAMLELKDAEAYRSKQEES 239 (508)
T ss_pred hhhhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999977766666666444444
Q ss_pred HHHHHHHHHHH--HHHhhhcchhhhhhccccCcccCCCcchhHHH-HhhccCcccccccccccCChHHHHHhhhhHHHHH
Q 011313 174 ERKKRLEKERM--ERAKRYEEPAWARIDDEGDNEVGNEEGLEEEE-IEKKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKE 250 (489)
Q Consensus 174 ~rk~~~ek~r~--era~~~~e~~w~~~~e~ee~~~~~~~~~~ee~-~~~~~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~ 250 (489)
++++...++.. .+...+....|+.+.+.++.+....+++.+.+ .+...+.+||+||+|+|+|++||.||++||||++
T Consensus 240 Rk~~~~~r~e~~e~r~n~~e~~~~~~~~e~ed~~e~~~d~~~e~de~d~~ge~lyC~vCnKsFKseKq~kNHEnSKKHke 319 (508)
T KOG0717|consen 240 RKQQLRKRREYAETRKNNGEGSEEALKEEIEDELEKSSDDETESDEADNEGEVLYCVVCNKSFKSEKQLKNHENSKKHKE 319 (508)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccchhhhhhhhcCCceEEeeccccccchHHHHhhHHHHHHHH
Confidence 43332222221 22222222344443333332222222222222 2334455999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhcCCCchhhHHHhHHhhhccchhhhhhcCCCCCCCCCCccccchhcccccccccccccccCCC
Q 011313 251 KVADLRESFVDEDEVMADFGELDGEVEELGERFKDNVGVEEREIGSGVGGLSGDEDVESEFFDVADGVEVNEVDDRFGKE 330 (489)
Q Consensus 251 ~~~~l~~~~~~e~~~~~~~~~~e~~~~~l~~~l~~~l~~~~~e~~k~~~~~s~~~~~ere~~~e~~~~~~~e~d~~~~~~ 330 (489)
+|.+|+++|.++++. +..+ +.- ..+.+.+.+ ++-.+
T Consensus 320 nv~eLrqemEEEe~d-~~~~---------------------------qae-----e~e~e~~se-----------ee~~~ 355 (508)
T KOG0717|consen 320 NVAELRQEMEEEEED-EAQG---------------------------QAE-----ENELEDFSE-----------EEPED 355 (508)
T ss_pred HHHHHHHHHHHhhhh-hhhh---------------------------ccc-----cchhhhhhh-----------hcccc
Confidence 999999999876420 0000 000 012233322 11123
Q ss_pred CCCCCcchhhhHHHHHHHHccccccccccccccccccccccccccccCCccccccccchhhhhhhhhhhccCCCCCCCCC
Q 011313 331 DEDEDEDADDEVNMLKAMLSGHKNRKRVAVRKEDEVLKTEAHVENEIGESEFMEYDNCKSTRRKNKKDRGKKSGGEAAKG 410 (489)
Q Consensus 331 ~~~~~e~~ddE~~~l~~m~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~n~k~~~~~~~~~~~~~~~~~~~~~ 410 (489)
+.+.+++...++.-.+-|+|+..|-+-...+-...+-+. +++.+.+..++.++++.|.++... +.|--. ++..
T Consensus 356 d~ses~~~n~~~~~~k~~~s~d~n~~~n~~~E~~d~~~e--~~e~d~dtae~ee~d~qk~~~~~k-~~K~~~----D~k~ 428 (508)
T KOG0717|consen 356 DPSESEYKNKEKDRDKKNVSFDENEKVNTFAEISDEDFE--PAEEDGDTAESEEFDQQKNKSVNK-KIKPCD----DKKD 428 (508)
T ss_pred CCCCCchhhhHhhhhhcccchhhhhhhccccccccCCCc--ccccccccccchhhccccccchhh-hccccc----cchh
Confidence 344466667788889999999999877666655555333 346777778888999999966554 222211 4667
Q ss_pred CCCCCCCCCcccCCCCCCCccccccC
Q 011313 411 DRDGFKSTNEEANGHHNSGVIEESSS 436 (489)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~e~~s~ 436 (489)
.+.++..|....+.+++..+..+.|.
T Consensus 429 ~a~kvk~pk~~~~kd~~k~a~~~p~~ 454 (508)
T KOG0717|consen 429 EAKKVKKPKGKVTKDNKKPATVAPSS 454 (508)
T ss_pred hhhhccCCCCCCCCccCCCccCCCCC
Confidence 77788888777788888877766554
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=7.2e-23 Score=211.49 Aligned_cols=73 Identities=47% Similarity=0.755 Sum_probs=68.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
++|||+||||+++||.+|||+|||+||++||||+| ++ .++|.++|++|++||+|||||++|+.||+++...+.
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n--~g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRN--PG--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 78999999999999999999999999999999999 43 578999999999999999999999999999987765
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.4e-22 Score=200.45 Aligned_cols=95 Identities=38% Similarity=0.615 Sum_probs=77.5
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhccC
Q 011313 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSD 83 (489)
Q Consensus 4 ~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~~~ 83 (489)
..+|||+||||+++|+..+||+|||||||+|||||| | +.+.|...|+.|+.||+|||||.+|+.||.+|+.+|...
T Consensus 14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkN--p--ddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~ 89 (336)
T KOG0713|consen 14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKN--P--DDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE 89 (336)
T ss_pred cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC--C--CCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence 468999999999999999999999999999999999 4 467899999999999999999999999999999888754
Q ss_pred CCCCCCCCCCCCcccccCC
Q 011313 84 LNSASNCGPVPNLYSYFSN 102 (489)
Q Consensus 84 ~~~~~~~~~~~dlf~ff~~ 102 (489)
+....++...-++|++|++
T Consensus 90 ~~~~~~g~~~~~~f~~~f~ 108 (336)
T KOG0713|consen 90 NKDGEGGGGGNDIFSAFFG 108 (336)
T ss_pred ccccccCCcccchHHHhhc
Confidence 3111111111456665443
No 4
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.9e-19 Score=175.95 Aligned_cols=160 Identities=33% Similarity=0.466 Sum_probs=122.1
Q ss_pred CCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhh--
Q 011313 5 KRCLYEVLGLRK---ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI-- 79 (489)
Q Consensus 5 ~~dyYevLGV~~---~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~-- 79 (489)
..|+|.+|||+. .|++.+|.+|.++.+++||||+..+.| ...+...|.+|+.||+||+|+..|..||+.....
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g--~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~adv 119 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG--NKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADV 119 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC--CCCcHHHHHHHHHHHHHhccHHHHhhccccccccCC
Confidence 468999999976 889999999999999999999995443 4567899999999999999999999999865321
Q ss_pred -----------------hccCCCCCCCCCCC-------------CCcccccCC----CCCC----CCCCCCCCcccchhh
Q 011313 80 -----------------LFSDLNSASNCGPV-------------PNLYSYFSN----TAFS----GYSDSGPNRKSRRVM 121 (489)
Q Consensus 80 -----------------l~~~~~~~~~~~~~-------------~dlf~ff~~----~~f~----g~~d~a~~R~~RR~m 121 (489)
+|.....++--.|+ ..||.||++ ..|. .|.|+.++|..+|..
T Consensus 120 ppp~~~t~~~Ffe~w~pvFe~earFSkKqPvPsLg~~dss~keVe~FY~FW~nFdSWRtFE~lded~pdd~e~rD~kry~ 199 (379)
T COG5269 120 PPPRIYTPDEFFEVWEPVFEREARFSKKQPVPSLGPSDSSLKEVEEFYEFWSNFDSWRTFEPLDEDYPDDMEERDRKRYS 199 (379)
T ss_pred CCccCCCchhHHHHHHHHHHhhhhccccCCCCCCCCchhHHHHHHHHHHHHHhccccccccchhhhcCcchhhhhhHHHH
Confidence 11111111112233 245677754 3332 244557889999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHhHHHHhHHHHH
Q 011313 122 EEENKKLRKKAKREYNETVRELAAFVKKRDKRVMDMMVKKNEEIE 166 (489)
Q Consensus 122 EkeNkk~r~k~kkeyn~~Ir~Lv~~~kkrDpRv~~~~~~~~~eee 166 (489)
+..|+..|.+++...|.+|+.||+.+.++||||+-+..+.+...+
T Consensus 200 e~KNr~~r~k~K~~DnaRl~~LV~~A~~~DPRIK~fkEqeK~~k~ 244 (379)
T COG5269 200 EAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKK 244 (379)
T ss_pred HhhhHHHHHhhhchhHHHHHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999766444333333
No 5
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.7e-19 Score=184.43 Aligned_cols=76 Identities=41% Similarity=0.678 Sum_probs=69.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhccCC
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFSDL 84 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~~~~ 84 (489)
.+.||.||||+++||..+||+|||+||++|||||| |+ +.++|++|+.||+|||||.+|..||.+++..+..+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn--~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~ 75 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKN--PD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG 75 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCC--cc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC
Confidence 56799999999999999999999999999999999 33 789999999999999999999999999999886554
Q ss_pred CCC
Q 011313 85 NSA 87 (489)
Q Consensus 85 ~~~ 87 (489)
.++
T Consensus 76 ~~~ 78 (337)
T KOG0712|consen 76 GGG 78 (337)
T ss_pred CCC
Confidence 443
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.9e-19 Score=186.67 Aligned_cols=72 Identities=39% Similarity=0.544 Sum_probs=65.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||..+||+|||+||++||||+| + ...|.++|++|++||+|||||.+|+.||.++..++.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n--~---~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~ 74 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN--K---SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFD 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--C---CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhc
Confidence 57999999999999999999999999999999998 2 245889999999999999999999999999876553
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=2.9e-19 Score=186.47 Aligned_cols=73 Identities=40% Similarity=0.635 Sum_probs=66.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~--~~--~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~ 74 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRN--AG--DKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLN 74 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccc
Confidence 47999999999999999999999999999999998 32 346899999999999999999999999999876543
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.2e-18 Score=180.02 Aligned_cols=73 Identities=42% Similarity=0.746 Sum_probs=66.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||..+||+|||+||++||||++ ++ ...|.++|++|++||+||+||.+|+.||.++...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKN--KG--NKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVN 75 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhc
Confidence 47999999999999999999999999999999998 32 356889999999999999999999999999876654
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=2.6e-18 Score=179.46 Aligned_cols=72 Identities=40% Similarity=0.661 Sum_probs=65.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||.++||+|||+||++||||+++ ...|.++|+.|++||+||+||.+|+.||.++...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-----~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~ 74 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-----APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPN 74 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccc
Confidence 579999999999999999999999999999999982 246889999999999999999999999999876543
No 10
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.73 E-value=5.5e-18 Score=189.70 Aligned_cols=74 Identities=27% Similarity=0.440 Sum_probs=67.1
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhcc
Q 011313 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS 82 (489)
Q Consensus 4 ~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~~ 82 (489)
+.++||+||||+++||..+||+|||+||++||||++ ++ ..|..+|+.|++||+|||||.+|++||.+|..++.+
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN--~~---~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKR--SG---NEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC--CC---chHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 568999999999999999999999999999999999 43 257889999999999999999999999998876543
No 11
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.72 E-value=6.5e-18 Score=176.82 Aligned_cols=72 Identities=42% Similarity=0.701 Sum_probs=65.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||.++||+|||+||++||||+++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-----EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGID 75 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-----ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccc
Confidence 479999999999999999999999999999999982 245789999999999999999999999999876543
No 12
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.71 E-value=6e-18 Score=179.27 Aligned_cols=69 Identities=51% Similarity=0.812 Sum_probs=63.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||..+||+|||+||++||||++ + . .++|++|++||+|||||.+|+.||.++..++.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~--~---~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~ 95 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKG--G---D---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE 95 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--c---h---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence 57999999999999999999999999999999998 2 1 47999999999999999999999999876554
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=7.5e-18 Score=176.45 Aligned_cols=72 Identities=38% Similarity=0.591 Sum_probs=65.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||.++||+|||+||++||||+++ ...|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~ 74 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-----EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN 74 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence 579999999999999999999999999999999983 235789999999999999999999999999876654
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.2e-17 Score=174.16 Aligned_cols=73 Identities=42% Similarity=0.702 Sum_probs=66.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhh
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l 80 (489)
..|||+||||+++||..+||+|||+||++||||++ ++ ....|.++|++|++||+||+||.+|+.||.++...+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~ 75 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRH--PE-NRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGE 75 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--cc-chhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcccc
Confidence 58999999999999999999999999999999998 32 234689999999999999999999999999887544
No 15
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.4e-17 Score=174.39 Aligned_cols=73 Identities=45% Similarity=0.749 Sum_probs=66.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~ 75 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKN--KG--NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFN 75 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccccc
Confidence 47999999999999999999999999999999998 32 356889999999999999999999999999876553
No 16
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.4e-17 Score=173.65 Aligned_cols=73 Identities=47% Similarity=0.717 Sum_probs=66.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||.++||+|||+||++||||++ ++ .+.|.++|++|++||+||+||.+|..||.++..++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~ 74 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKN--KG--NKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFE 74 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--CHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhc
Confidence 37999999999999999999999999999999998 32 356889999999999999999999999999876553
No 17
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.7e-17 Score=174.17 Aligned_cols=73 Identities=42% Similarity=0.730 Sum_probs=66.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 76 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLN--PG--DKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence 47999999999999999999999999999999998 32 346889999999999999999999999999876543
No 18
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=173.59 Aligned_cols=68 Identities=41% Similarity=0.646 Sum_probs=63.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhh
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 78 (489)
.|||+||||+++||.++||+|||+||++||||++ + ...|.++|+.|++||+||+||.+|+.||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~--~---~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVN--P---DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCC--C---cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 7999999999999999999999999999999998 2 356889999999999999999999999998865
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=1.8e-17 Score=173.42 Aligned_cols=72 Identities=44% Similarity=0.637 Sum_probs=65.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||..+||+|||+||++||||+++ ...|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~-----~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 74 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-----EEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN 74 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence 479999999999999999999999999999999983 235889999999999999999999999999876554
No 20
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.70 E-value=2.1e-17 Score=172.25 Aligned_cols=73 Identities=45% Similarity=0.767 Sum_probs=66.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||..+||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~ 75 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRN--PG--DKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLS 75 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--chHHHHHHHHHHHHHHHhccHHHHHHHHhhcccccc
Confidence 68999999999999999999999999999999998 32 346889999999999999999999999999876553
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=3.7e-17 Score=170.68 Aligned_cols=73 Identities=48% Similarity=0.786 Sum_probs=66.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 75 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRN--PG--DKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFE 75 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--cHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccc
Confidence 57999999999999999999999999999999998 32 345889999999999999999999999999876543
No 22
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3e-17 Score=172.64 Aligned_cols=70 Identities=37% Similarity=0.657 Sum_probs=64.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhh
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQ 78 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~ 78 (489)
.+|||+||||+++||..+||+|||+||++||||++ ++ .+.|.++|+.|++||+|||||.+|+.||.++..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDAN--PG--DPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--ChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 47999999999999999999999999999999998 32 356899999999999999999999999999763
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=5.3e-17 Score=169.76 Aligned_cols=73 Identities=45% Similarity=0.716 Sum_probs=66.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~ 75 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRN--PD--NPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVN 75 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcC--CC--ChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccc
Confidence 58999999999999999999999999999999998 32 356889999999999999999999999999876553
No 24
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=4.6e-17 Score=170.38 Aligned_cols=71 Identities=41% Similarity=0.653 Sum_probs=65.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhh
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l 80 (489)
..|||+||||+++||..+||+|||+||++||||+| + ...|.++|+.|++||+||+||.+|++||.++..++
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~---~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~ 74 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVS--E---EEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGM 74 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCC--C---CccHHHHHHHHHHHHHHhchhHHHHHHhhhccccc
Confidence 68999999999999999999999999999999998 2 24689999999999999999999999999987654
No 25
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=8.8e-17 Score=168.94 Aligned_cols=71 Identities=44% Similarity=0.689 Sum_probs=64.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhh----hhhhhh
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS----HRSQIL 80 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~----~~~~~l 80 (489)
.|||+||||+++||..+||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||. ++..++
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~ 83 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDAN--KG--DAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGF 83 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccccc
Confidence 5999999999999999999999999999999998 32 34689999999999999999999999998 665544
No 26
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=1.2e-16 Score=162.01 Aligned_cols=70 Identities=40% Similarity=0.646 Sum_probs=64.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhh
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 79 (489)
..|||+||||+++||.++||+|||+||++||||+++ ...+.++|+.|++||+||+||.+|+.||.++...
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-----SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 579999999999999999999999999999999982 2468899999999999999999999999988754
No 27
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=9e-17 Score=168.49 Aligned_cols=71 Identities=41% Similarity=0.716 Sum_probs=65.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhh
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l 80 (489)
+.|||+||||+++||.++||+|||+||++||||+|+ ...|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~ 72 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNK-----NPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAF 72 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----CccHHHHHHHHHHHHHHhcCHHHHHHHhhhccccc
Confidence 479999999999999999999999999999999993 24578999999999999999999999999987654
No 28
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.3e-17 Score=169.73 Aligned_cols=77 Identities=42% Similarity=0.634 Sum_probs=70.5
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 4 ~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
+..+||.+|+|+++||.++|++|||++++.|||||...|. ....|+..|+.|++||+|||||++|++||.+|.++|.
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd-~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPD-QKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChh-HHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 4568999999999999999999999999999999996543 5567999999999999999999999999999998775
No 29
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=8.9e-17 Score=167.55 Aligned_cols=72 Identities=38% Similarity=0.714 Sum_probs=65.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhh
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l 80 (489)
.|||+||||+++||..+||+|||+||++||||++ +. ....|.++|+.|++||+||+||.+|+.||.++...+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~--~~-~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~ 74 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLH--PG-NKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDF 74 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-chhHHHHHHHHHHHHHHHhcChhhhhhhcccCCccc
Confidence 7999999999999999999999999999999998 32 234689999999999999999999999999987654
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1e-16 Score=168.78 Aligned_cols=73 Identities=45% Similarity=0.673 Sum_probs=66.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||+||||+++|+..+||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKN--PD--NKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcC--CC--chHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 37999999999999999999999999999999998 32 356889999999999999999999999999876654
No 31
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.4e-16 Score=167.44 Aligned_cols=72 Identities=44% Similarity=0.705 Sum_probs=65.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
.|||+||||+++||.++||+|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++...+.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~--~~--~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 72 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKN--PG--DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPF 72 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC--chHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccc
Confidence 3899999999999999999999999999999999 32 356889999999999999999999999999876553
No 32
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.66 E-value=9.4e-17 Score=166.52 Aligned_cols=70 Identities=44% Similarity=0.714 Sum_probs=64.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 7 dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
|||+||||+++||.++||+|||+||++||||+++ ...+.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 70 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-----DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----CccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence 7999999999999999999999999999999982 345789999999999999999999999999876554
No 33
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.65 E-value=2e-16 Score=124.59 Aligned_cols=64 Identities=47% Similarity=0.818 Sum_probs=59.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhh
Q 011313 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYD 73 (489)
Q Consensus 7 dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD 73 (489)
|||+||||+++++..+|+++|++|++.||||++. + ....+...|..|+.||++|++|..|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~--~-~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNS--G-DEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGT--S-THHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccch--h-hhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 5899999999999999999999999999999983 2 22568999999999999999999999998
No 34
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.6e-16 Score=159.26 Aligned_cols=73 Identities=47% Similarity=0.682 Sum_probs=66.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..|||.||||...||..+|++|||..||+|||||| |+ .+.|.+.|+.|.+||+||+||..|..||..+..++.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKN--p~--dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~ 76 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKN--PG--DPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSS 76 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCC--CC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccc
Confidence 68999999999999999999999999999999999 65 344999999999999999999999999999875543
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=2.2e-16 Score=165.08 Aligned_cols=71 Identities=35% Similarity=0.590 Sum_probs=64.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
.|||+||||+++||..+||+|||+||++||||+++ ...+.++|+.|++||+||+||.+|+.||.++...+.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-----~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 73 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-----AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQ 73 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccc
Confidence 79999999999999999999999999999999983 234788999999999999999999999999876553
No 36
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=4.1e-16 Score=163.63 Aligned_cols=72 Identities=50% Similarity=0.773 Sum_probs=65.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhh
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l 80 (489)
..|||+||||+++||.++|++|||+||++||||++ ++ ...|.++|+.|++||+||+||.+|+.||.++..++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~--~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~ 75 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKN--PG--DKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGV 75 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCC--CC--ChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc
Confidence 57999999999999999999999999999999998 32 35689999999999999999999999999887654
No 37
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.5e-16 Score=163.34 Aligned_cols=69 Identities=42% Similarity=0.692 Sum_probs=64.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhh
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 79 (489)
.|||+||||+++||.++||+|||+||++||||++. ...|.++|+.|++||+||+||.+|+.||.++..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-----~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-----EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 58999999999999999999999999999999982 3468899999999999999999999999988754
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=4.1e-16 Score=163.08 Aligned_cols=71 Identities=39% Similarity=0.659 Sum_probs=64.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
.|||+||||+++||..+||+|||+||++||||+++ ...|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-----~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~ 73 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-----EPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVS 73 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-----CcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccc
Confidence 79999999999999999999999999999999983 235789999999999999999999999999876543
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.2e-16 Score=152.99 Aligned_cols=73 Identities=49% Similarity=0.705 Sum_probs=66.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILF 81 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~ 81 (489)
..++|.||||+++|+.++||+|||+|+++||||+++ ..++++.+|+.|+.||.||+||.+|..||..+..++.
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~g----d~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNG----DNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCC----CCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 457999999999999999999999999999999993 2368999999999999999999999999999876654
No 40
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.2e-16 Score=149.20 Aligned_cols=72 Identities=51% Similarity=0.775 Sum_probs=65.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh
Q 011313 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (489)
Q Consensus 4 ~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 77 (489)
...|+|+||||.++||..+|++|||+|||+||||++ +.....+|+..|+.|+.||.||||..+|+.||..|.
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~--~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~ 83 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKN--HEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS 83 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcc--hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence 356999999999999999999999999999999999 344556899999999999999999999999998865
No 41
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.3e-15 Score=154.38 Aligned_cols=71 Identities=41% Similarity=0.621 Sum_probs=65.1
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhh
Q 011313 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (489)
Q Consensus 4 ~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 79 (489)
+..|||+||||+++||..|||.||++||++||||.|. ...|.++|+.|.+||+||+|+.+|..||..+...
T Consensus 41 ~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~-----~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 41 SKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNK-----DKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-----CcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 4458999999999999999999999999999999993 3489999999999999999999999999987654
No 42
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.59 E-value=1.2e-15 Score=155.71 Aligned_cols=68 Identities=35% Similarity=0.595 Sum_probs=62.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 77 (489)
..|||+||||++.||.++||+|||+||++||||++. ...+..+|+.|++||+||+||.+|+.||.++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-----~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-----EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 479999999999999999999999999999999982 24689999999999999999999999999764
No 43
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.56 E-value=4.2e-15 Score=151.59 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=65.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh
Q 011313 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (489)
Q Consensus 3 s~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 77 (489)
+.++|||.||||.++|+..+|-+|||+||++||||..+. ......|..+|.-|..|-+||+||.+|+.||..-.
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd-EeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD 464 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQD-EEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED 464 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccC-HHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence 468999999999999999999999999999999998732 11234699999999999999999999999998644
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.54 E-value=1.2e-14 Score=112.63 Aligned_cols=59 Identities=51% Similarity=0.875 Sum_probs=53.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCch
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPK 67 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~ 67 (489)
.+||+||||+++++..+|++||++|++.||||++ ++ ....+...|..|+.||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~--~~-~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKN--PG-DKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC--CC-chHHHHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999999999999998 32 15678999999999999999985
No 45
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.6e-14 Score=134.92 Aligned_cols=73 Identities=44% Similarity=0.705 Sum_probs=65.1
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhh
Q 011313 1 MASEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (489)
Q Consensus 1 m~s~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~ 76 (489)
|.....+||+||||+++|+..+|++|||++|++||||++ ++... .+...|..|++||.||+||..|..||..+
T Consensus 1 ~~~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~--~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 1 MMSDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRN--PGDPK-VAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred CchhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC--CCchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 455678999999999999999999999999999999999 33222 58999999999999999999999999863
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.51 E-value=2.8e-14 Score=108.48 Aligned_cols=55 Identities=47% Similarity=0.797 Sum_probs=50.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcC
Q 011313 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65 (489)
Q Consensus 7 dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsD 65 (489)
+||+||||++.++.++|+++||+|++.||||++. + . ..+...|..|+.||+||+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~--~-~-~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP--D-D-PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C-c-HHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999982 2 1 6789999999999999986
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.48 E-value=2.7e-14 Score=157.46 Aligned_cols=70 Identities=40% Similarity=0.647 Sum_probs=63.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhh
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQIL 80 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l 80 (489)
.|||+||||+++|+..+||+|||+|+++||||++. + ..+..+|+.|+.||+||+||.+|+.||.++..++
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~--~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~ 71 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNK--A---PDAASIFAEINEANDVLSNPKKRANYDKYGHDGV 71 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC--C---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence 68999999999999999999999999999999982 2 4678899999999999999999999999876543
No 48
>PHA03102 Small T antigen; Reviewed
Probab=99.44 E-value=7.1e-14 Score=129.54 Aligned_cols=66 Identities=23% Similarity=0.335 Sum_probs=59.5
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhh
Q 011313 6 RCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQI 79 (489)
Q Consensus 6 ~dyYevLGV~~~A--s~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~ 79 (489)
..+|+||||+++| |..+||+|||++|+++|||++ + ..+.|+.|+.||+||+|+..|..||.++...
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg--g------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~ 72 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG--G------DEEKMKELNTLYKKFRESVKSLRDLDGEEDS 72 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC--c------hhHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence 3589999999999 999999999999999999997 2 2469999999999999999999999987643
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.40 E-value=3.1e-13 Score=127.02 Aligned_cols=72 Identities=25% Similarity=0.333 Sum_probs=60.0
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh
Q 011313 5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (489)
Q Consensus 5 ~~dyYevLGV~~~--As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 77 (489)
+.|||+||||++. ++..+|+++||+|+++||||+..... ....+...|..|++||.||+||.+|+.|+-...
T Consensus 1 ~~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~-~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 1 MQNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQ-EKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 3689999999996 78999999999999999999983211 122356679999999999999999999987653
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=8.1e-13 Score=124.67 Aligned_cols=71 Identities=28% Similarity=0.366 Sum_probs=59.6
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-ChHHHHHHHHHHHHHHHHhcCchhhhhhhhhh
Q 011313 6 RCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (489)
Q Consensus 6 ~dyYevLGV~~~--As~~eIKkAYRklalk~HPDKn~~~~~-~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~ 76 (489)
.|||+||||++. ++..+|+++||+|+++||||+....+. ....+...|..|+.||.||+||..|+.|+-..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l 74 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSL 74 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHh
Confidence 489999999995 678999999999999999999843221 11236789999999999999999999999654
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.36 E-value=1.1e-12 Score=124.39 Aligned_cols=76 Identities=29% Similarity=0.418 Sum_probs=62.5
Q ss_pred CCCCCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCC-hHHHHHHHHHHHHHHHHhcCchhhhhhhhhh
Q 011313 1 MASEKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLS-QAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (489)
Q Consensus 1 m~s~~~dyYevLGV~~~--As~~eIKkAYRklalk~HPDKn~~~~~~-~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~ 76 (489)
|-++..|||+||||++. ++..+|+++||+|+++||||++...+.. ...+...+..|+.||.||+||.+|+.|.-..
T Consensus 1 ~~~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l 79 (176)
T PRK03578 1 MVSLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHL 79 (176)
T ss_pred CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHh
Confidence 45678999999999995 6889999999999999999998422211 1135667899999999999999999999754
No 52
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.1e-12 Score=126.58 Aligned_cols=70 Identities=31% Similarity=0.557 Sum_probs=63.2
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh
Q 011313 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (489)
Q Consensus 4 ~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 77 (489)
...|+|+||||+++||..+||+|||+|+++|||||++.+ ....+.|..|..||+.|+|...|..|..++.
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE----EGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc----chhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 456899999999999999999999999999999999432 4567889999999999999999999998875
No 53
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.7e-12 Score=135.04 Aligned_cols=72 Identities=47% Similarity=0.811 Sum_probs=66.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh
Q 011313 3 SEKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (489)
Q Consensus 3 s~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 77 (489)
+...|||.||||.+.|+..+|++|||++||.||||++ .+ +..++..+|+.|-+||.||+||.+|..||+.-.
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~--ag-sq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d 441 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN--AG-SQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD 441 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC--cc-hhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence 3567999999999999999999999999999999999 44 467899999999999999999999999998643
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.30 E-value=5.3e-12 Score=119.42 Aligned_cols=74 Identities=27% Similarity=0.438 Sum_probs=61.8
Q ss_pred CCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCC-ChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh
Q 011313 4 EKRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (489)
Q Consensus 4 ~~~dyYevLGV~~~--As~~eIKkAYRklalk~HPDKn~~~~~-~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 77 (489)
...+||+||||++. .+..+|+++||+|+++||||++...+. ....+...|..|+.||.||+||.+|+.|+-...
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 36899999999996 668999999999999999999833221 123477889999999999999999999997643
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.3e-12 Score=124.35 Aligned_cols=75 Identities=41% Similarity=0.690 Sum_probs=65.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhhhhhcc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRSQILFS 82 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~~~l~~ 82 (489)
..+||.||||.+.|+..+|++||++||++||||++ ++. ...|...|.+|.+||+||+||.+|..||..+...+.+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~--~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~ 76 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKN--PSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKG 76 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCC--CCc-hhhHHHHHhhhhccccccCCHHHhhhccccCcccccc
Confidence 57999999999999999999999999999999998 443 4456669999999999999999999999998854443
No 56
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.4e-12 Score=131.98 Aligned_cols=67 Identities=33% Similarity=0.543 Sum_probs=62.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhh
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~ 76 (489)
.+|+|.||||+.++++++||+.||++|...||||| ..+.|.+.|+.|+.||+||+|+.+|..||...
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn-----~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKN-----MIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCcc-----CChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 57899999999999999999999999999999999 35679999999999999999999999999754
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.14 E-value=5.1e-11 Score=119.79 Aligned_cols=60 Identities=40% Similarity=0.636 Sum_probs=53.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCCh---HHHHHHHHHHHHHHHHhcC
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQ---AEATAQFQELVHAYEVLSD 65 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~---~~a~~~F~~I~~AYevLsD 65 (489)
.++|+||||++++|.++||+|||+|+++||||++...+.+. +.|+++|+.|+.||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999985444332 4689999999999999985
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.8e-11 Score=119.12 Aligned_cols=69 Identities=35% Similarity=0.596 Sum_probs=61.7
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh
Q 011313 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (489)
Q Consensus 4 ~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 77 (489)
...|.|+||||.+.|+..+|.+|||+||++||||+++. +++...|..|..||++|.|...|..||-...
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-----~e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-----PESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-----chhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 45689999999999999999999999999999999933 3456999999999999999999999996543
No 59
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.05 E-value=1.3e-10 Score=103.05 Aligned_cols=52 Identities=31% Similarity=0.462 Sum_probs=46.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhc
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLs 64 (489)
..++|+||||+++||.++|+++||+|+++||||+. | ....|..|++||+||.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG---G-----STYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-----CHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999985 2 2468899999999995
No 60
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.3e-08 Score=97.42 Aligned_cols=68 Identities=29% Similarity=0.436 Sum_probs=60.2
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhh
Q 011313 4 EKRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDS 74 (489)
Q Consensus 4 ~~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~ 74 (489)
-+.++|+||.|.|..+.++||+.||+|++..||||| |. +.+.|...|-.|..||.+|-|+..|...+.
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN--~D-d~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKN--PD-DAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCC--cc-cHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 357899999999999999999999999999999999 43 557799999999999999999997765544
No 61
>PHA02624 large T antigen; Provisional
Probab=98.95 E-value=5.6e-10 Score=122.37 Aligned_cols=60 Identities=27% Similarity=0.393 Sum_probs=55.2
Q ss_pred CCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhh
Q 011313 5 KRCLYEVLGLRKEC--TTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWY 72 (489)
Q Consensus 5 ~~dyYevLGV~~~A--s~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~Y 72 (489)
..++|+||||+++| +..+||+|||++|++||||++ | +.+.|+.|+.||++|+|+..|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg---G-----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG---G-----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC---C-----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 35799999999999 999999999999999999996 2 257999999999999999999998
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.93 E-value=1.7e-09 Score=102.47 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=60.5
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCcCCCCCC-hHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh
Q 011313 5 KRCLYEVLGLRKE--CTTDEIRSAYKKLALQRHPDKLVQSGLS-QAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (489)
Q Consensus 5 ~~dyYevLGV~~~--As~~eIKkAYRklalk~HPDKn~~~~~~-~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 77 (489)
+.|||++|||++. .+...|++.|+.|...+|||+....+.. ..-+......||+||.||.||.+|+.|=-...
T Consensus 1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 3689999999995 8999999999999999999998443211 12367788999999999999999999976543
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.75 E-value=6.5e-09 Score=109.30 Aligned_cols=73 Identities=26% Similarity=0.471 Sum_probs=63.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCC-CCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh
Q 011313 5 KRCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQS-GLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (489)
Q Consensus 5 ~~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~-~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 77 (489)
..|+|+||||+.+++..+||++||+|+.++||||.++- +....+-.+.+..|+.||..|+|...|..|-.+|.
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGt 170 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGT 170 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCC
Confidence 46899999999999999999999999999999998431 12345688999999999999999999999988764
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.74 E-value=1.7e-08 Score=94.15 Aligned_cols=61 Identities=33% Similarity=0.400 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcCCCCC-ChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh
Q 011313 17 ECTTDEIRSAYKKLALQRHPDKLVQSGL-SQAEATAQFQELVHAYEVLSDPKERAWYDSHRS 77 (489)
Q Consensus 17 ~As~~eIKkAYRklalk~HPDKn~~~~~-~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~ 77 (489)
..+..+|+++||+|+++||||+....+. ....+...|..|+.||.||+||.+|+.|.-...
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 3467899999999999999999743221 123478899999999999999999999998754
No 65
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=98.56 E-value=2.9e-08 Score=66.09 Aligned_cols=26 Identities=58% Similarity=0.957 Sum_probs=25.4
Q ss_pred ccccccccccCChHHHHHhhhhHHHH
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQSKKHK 249 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~SkkHk 249 (489)
|||++|++.|.++.+|.+|++|++|+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCCCC
Confidence 79999999999999999999999996
No 66
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=98.21 E-value=7.8e-07 Score=61.97 Aligned_cols=32 Identities=41% Similarity=0.735 Sum_probs=30.2
Q ss_pred cccccccccccCChHHHHHhhhhHHHHHHHHH
Q 011313 223 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVAD 254 (489)
Q Consensus 223 ~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~ 254 (489)
.|||.+|++.|.+..+|.+|.+|++|+.+|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence 58999999999999999999999999999874
No 67
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=98.09 E-value=1.9e-06 Score=55.87 Aligned_cols=25 Identities=52% Similarity=0.991 Sum_probs=24.4
Q ss_pred ccccccccccCChHHHHHhhhhHHH
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQSKKH 248 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~SkkH 248 (489)
|+|.+|++.|.+..+|..|++|++|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 7899999999999999999999998
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=1.3e-05 Score=78.72 Aligned_cols=55 Identities=33% Similarity=0.577 Sum_probs=48.8
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHH-HhcCc
Q 011313 7 CLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYE-VLSDP 66 (489)
Q Consensus 7 dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYe-vLsDp 66 (489)
.||.||||..+|+..+++.||..|++.+|||.. ......+.|++|.+||. ||+..
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsg-----s~~adaa~f~qideafrkvlq~~ 103 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSG-----SEEADAARFIQIDEAFRKVLQEK 103 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCC-----CccccHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999987 34556789999999998 88743
No 69
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=97.78 E-value=1e-05 Score=72.00 Aligned_cols=37 Identities=38% Similarity=0.770 Sum_probs=34.5
Q ss_pred cCcccccccccccCChHHHHHhhhhHHHHHHHHHHHH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~ 257 (489)
..-|||..|.+.|.+.++|+.|.+||.|++.|+.|+.
T Consensus 55 ~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~ 91 (129)
T KOG3408|consen 55 GGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE 91 (129)
T ss_pred CceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence 4579999999999999999999999999999998873
No 70
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2.7e-05 Score=89.01 Aligned_cols=51 Identities=37% Similarity=0.519 Sum_probs=43.8
Q ss_pred CcccccCCCC----CCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhc
Q 011313 7 CLYEVLGLRK----ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (489)
Q Consensus 7 dyYevLGV~~----~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLs 64 (489)
+-|+||.|+- .-..+.||++|++||.+|||||| | +..++|..+++||+.|+
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKN--P-----EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKN--P-----EGREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCC--c-----hHHHHHHHHHHHHHHHH
Confidence 4799999876 33447899999999999999999 2 35789999999999998
No 71
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=97.16 E-value=0.00032 Score=73.34 Aligned_cols=39 Identities=38% Similarity=0.635 Sum_probs=35.2
Q ss_pred hccCcccccccccccCChHHHHHhhhhHHHHHHHHHHHH
Q 011313 219 KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (489)
Q Consensus 219 ~~~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~ 257 (489)
+....+||.+|+|.|.+.+++.+|+.|++|..++..+.+
T Consensus 64 ~~~~~~~c~~c~k~~~s~~a~~~hl~Sk~h~~~~~~~~r 102 (390)
T KOG2785|consen 64 EAESVVYCEACNKSFASPKAHENHLKSKKHVENLSNHQR 102 (390)
T ss_pred hcccceehHHhhccccChhhHHHHHHHhhcchhhhhhhc
Confidence 345678999999999999999999999999999998765
No 72
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0006 Score=59.79 Aligned_cols=49 Identities=22% Similarity=0.373 Sum_probs=42.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCc
Q 011313 10 EVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66 (489)
Q Consensus 10 evLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp 66 (489)
-||||.++++.+.||.|+|++-+..|||+...| -.-..|++|+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP--------YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP--------YLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH--------HHHHHHHHHHHHHhcc
Confidence 399999999999999999999999999998432 3455799999999753
No 73
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=96.88 E-value=0.00059 Score=59.76 Aligned_cols=38 Identities=34% Similarity=0.712 Sum_probs=35.1
Q ss_pred cCcccccccccccCChHHHHHhhhhHHHHHHHHHHHHH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRES 258 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~~ 258 (489)
..-+||..|.+.|.|..+|..|.++|-|++.++.|+..
T Consensus 53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRev 90 (126)
T COG5112 53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELREV 90 (126)
T ss_pred CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhcC
Confidence 35789999999999999999999999999999999864
No 74
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0021 Score=60.02 Aligned_cols=72 Identities=26% Similarity=0.438 Sum_probs=56.1
Q ss_pred CCCcccccCCCC--CCCHHHHHHHHHHHHHHhCCCCcCCCCCC-hHHHHHHHHHHHHHHHHhcCchhhhhhhhhh
Q 011313 5 KRCLYEVLGLRK--ECTTDEIRSAYKKLALQRHPDKLVQSGLS-QAEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (489)
Q Consensus 5 ~~dyYevLGV~~--~As~~eIKkAYRklalk~HPDKn~~~~~~-~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~ 76 (489)
..+||.++|... ...+.-+.--|.-...++|||+...+... ...|.+....|++||.+|.||-.|+.|=...
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356999998654 55666677689999999999996443222 2258888999999999999999999997653
No 75
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=96.62 E-value=0.0015 Score=47.22 Aligned_cols=32 Identities=34% Similarity=0.656 Sum_probs=19.6
Q ss_pred cccccccccccCCh--HHHHHhhhhHHHHHHHHH
Q 011313 223 EFYCVLCGKKFKSE--KQWTNHEQSKKHKEKVAD 254 (489)
Q Consensus 223 ~~~C~~C~K~Fks~--~~~~nH~~SkkHk~~~~~ 254 (489)
-+||..|++.|.+. ...++|+++.+|+.+|++
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~ 36 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR 36 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence 37999999999443 466999999999999874
No 76
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=96.25 E-value=0.0026 Score=60.06 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=31.7
Q ss_pred cCcccccccccccCChHHHHHhhhhHHHHHHHHHH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 255 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l 255 (489)
..-|||.+|+=+|+..-+|+.|++.|+|..++-.+
T Consensus 73 ~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms 107 (193)
T KOG4727|consen 73 KGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS 107 (193)
T ss_pred cCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence 45799999999999999999999999999987644
No 77
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.17 E-value=0.0061 Score=66.14 Aligned_cols=50 Identities=36% Similarity=0.494 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChH---HHHHHHHHHHHHHHH
Q 011313 13 GLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQA---EATAQFQELVHAYEV 62 (489)
Q Consensus 13 GV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~---~a~~~F~~I~~AYev 62 (489)
+|..-.+..+||+||||.+|..||||.+..|.... -|.+.|-.+++|+..
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 45557799999999999999999999976653322 356666666666653
No 78
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.03 Score=57.94 Aligned_cols=141 Identities=23% Similarity=0.299 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCchhhhhhhhhhh--hhhcc-CC---------
Q 011313 17 ECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDPKERAWYDSHRS--QILFS-DL--------- 84 (489)
Q Consensus 17 ~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp~~R~~YD~~~~--~~l~~-~~--------- 84 (489)
.++..+|..+|+..++.+||++..............|++|..||.||.+...|..+|.+.. ..+.. ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~ 82 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYI 82 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhh
Confidence 4677899999999999999998721000112456789999999999999666666666541 00110 00
Q ss_pred -------CCCCCCCCCC-------------Cccc----ccCCCCCCCCCCCC----CCcccchhh-----HHHhHHHHHH
Q 011313 85 -------NSASNCGPVP-------------NLYS----YFSNTAFSGYSDSG----PNRKSRRVM-----EEENKKLRKK 131 (489)
Q Consensus 85 -------~~~~~~~~~~-------------dlf~----ff~~~~f~g~~d~a----~~R~~RR~m-----EkeNkk~r~k 131 (489)
+.+.+..+++ .++. +..+..|....... .++..+|++ ...+...+..
T Consensus 83 ~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (335)
T KOG0724|consen 83 GLVFDVNIRESGQKPFPKYGKSDTSLAEVEEFYNFWPKFKSWRQYPQKDEPDEEDSENRSQSRYSGGTQRGKSNAEELRR 162 (335)
T ss_pred hhHHHHhhhhccCCCccccCccccccccccccCCccccccccccCCCCCCcccccccchhhhhhcccccccccchhhhhh
Confidence 0000001111 1222 22233343332211 456667766 3677888889
Q ss_pred HHHHHHHHHHHHHHHHHhhCHHHHhH
Q 011313 132 AKREYNETVRELAAFVKKRDKRVMDM 157 (489)
Q Consensus 132 ~kkeyn~~Ir~Lv~~~kkrDpRv~~~ 157 (489)
........++.|+......++++.-.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (335)
T KOG0724|consen 163 KGTPVTERERKLVLLALKKDGKIDWR 188 (335)
T ss_pred ccchhHHHHHHHHHhhhcccccccce
Confidence 99999999999999999999999653
No 79
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.71 E-value=0.0069 Score=38.18 Aligned_cols=22 Identities=32% Similarity=0.806 Sum_probs=20.6
Q ss_pred ccccccccccCChHHHHHhhhh
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQS 245 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~S 245 (489)
|.|..|++.|.+...|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 5799999999999999999986
No 80
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.0086 Score=56.78 Aligned_cols=58 Identities=34% Similarity=0.571 Sum_probs=49.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChH---HHHHHHHHHHHHHHHh
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQA---EATAQFQELVHAYEVL 63 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~---~a~~~F~~I~~AYevL 63 (489)
.+.|.+||+...+....|+++|+++.-.+|||+-...+.+.+ .+...++.|+.||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999855454333 5788899999999753
No 81
>PLN02748 tRNA dimethylallyltransferase
Probab=95.58 E-value=0.0093 Score=64.96 Aligned_cols=36 Identities=25% Similarity=0.840 Sum_probs=32.9
Q ss_pred Cccccccccc-ccCChHHHHHhhhhHHHHHHHHHHHH
Q 011313 222 SEFYCVLCGK-KFKSEKQWTNHEQSKKHKEKVADLRE 257 (489)
Q Consensus 222 ~~~~C~~C~K-~Fks~~~~~nH~~SkkHk~~~~~l~~ 257 (489)
.-|+|.+|++ +|....+|.-|++|+.|+++++.+++
T Consensus 417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k 453 (468)
T PLN02748 417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ 453 (468)
T ss_pred ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence 4568999997 89999999999999999999998865
No 82
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.018 Score=54.64 Aligned_cols=70 Identities=27% Similarity=0.385 Sum_probs=54.8
Q ss_pred CcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCcCCCCCCh-HHHHHHHHHHHHHHHHhcCchhhhhhhhhh
Q 011313 7 CLYEVLGLRKECTT--DEIRSAYKKLALQRHPDKLVQSGLSQ-AEATAQFQELVHAYEVLSDPKERAWYDSHR 76 (489)
Q Consensus 7 dyYevLGV~~~As~--~eIKkAYRklalk~HPDKn~~~~~~~-~~a~~~F~~I~~AYevLsDp~~R~~YD~~~ 76 (489)
+|+.++|+++.+.. ..++..|+.+.+.||||+....+... ..+...|..++.||.+|-+|..|+.|=...
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal 74 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLAL 74 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 56777777775544 46899999999999999985544222 236678999999999999999999987553
No 83
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=94.46 E-value=0.022 Score=37.21 Aligned_cols=23 Identities=39% Similarity=0.700 Sum_probs=20.9
Q ss_pred cccccccccccCChHHHHHhhhh
Q 011313 223 EFYCVLCGKKFKSEKQWTNHEQS 245 (489)
Q Consensus 223 ~~~C~~C~K~Fks~~~~~nH~~S 245 (489)
+|.|..|++.|.+..+|..|.++
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~ 23 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRS 23 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCT
T ss_pred CCCCCccCCccCChhHHHHHhHH
Confidence 47899999999999999999864
No 84
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.41 E-value=0.025 Score=35.09 Aligned_cols=22 Identities=36% Similarity=0.922 Sum_probs=18.3
Q ss_pred ccccccccccCChHHHHHhhhh
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQS 245 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~S 245 (489)
|.|..|++.|.+...|..|+.+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~ 22 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRT 22 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHh
Confidence 5799999999999999999875
No 85
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=93.64 E-value=0.034 Score=58.02 Aligned_cols=37 Identities=30% Similarity=0.607 Sum_probs=33.4
Q ss_pred cCcccccccccccCChHHHHHhhhhHHHHHHHHHHHH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~ 257 (489)
..-+||+.|.+-|+..+.|..|+.+|-|.++++..+.
T Consensus 236 ~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~ 272 (470)
T COG5188 236 FPKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE 272 (470)
T ss_pred ccceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence 4678999999999999999999999999999886654
No 86
>KOG3032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=0.099 Score=51.84 Aligned_cols=36 Identities=31% Similarity=0.680 Sum_probs=33.4
Q ss_pred cCcccccccccccCChHHHHHhhhhHHHHHHHHHHHH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~ 257 (489)
.+.+.|.+|+--.+ .+-|..|.+||+|+.+|..|+.
T Consensus 33 sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs 68 (264)
T KOG3032|consen 33 SGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS 68 (264)
T ss_pred CCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence 45689999999999 9999999999999999999983
No 87
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=92.65 E-value=0.039 Score=45.84 Aligned_cols=31 Identities=35% Similarity=0.724 Sum_probs=26.3
Q ss_pred cccccccccccCChHHHHHhhhhHHHHHHHH
Q 011313 223 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA 253 (489)
Q Consensus 223 ~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~ 253 (489)
.|.|.+|++.|.+..+|..|++++.|.....
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~ 80 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRNS 80 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence 5899999999999999999999999987654
No 88
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.46 E-value=0.15 Score=31.71 Aligned_cols=21 Identities=38% Similarity=0.779 Sum_probs=19.6
Q ss_pred ccccccccccCChHHHHHhhh
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQ 244 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~ 244 (489)
+.|..|++.|.+...|..|.+
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 469999999999999999987
No 89
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]
Probab=90.21 E-value=0.082 Score=53.52 Aligned_cols=35 Identities=23% Similarity=0.577 Sum_probs=32.2
Q ss_pred cccccccccccCChHHHHHhhhhHHHHHHHHHHHH
Q 011313 223 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (489)
Q Consensus 223 ~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~ 257 (489)
-|||..|-|.|.++|.|+-|..|..|.+.+.+...
T Consensus 25 RwyCqmCQkQcrDeNGFkCH~~SeSHqRql~~~~~ 59 (309)
T KOG2837|consen 25 RWYCQMCQKQCRDENGFKCHTMSESHQRQLLLFAL 59 (309)
T ss_pred HHHHHHHHHHhccccccccccCCHHHHHHHHHHHh
Confidence 48999999999999999999999999999887753
No 90
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=90.15 E-value=0.17 Score=38.73 Aligned_cols=27 Identities=33% Similarity=0.571 Sum_probs=23.5
Q ss_pred cccccccccccCChHHHHHhhhhHHHHHHH
Q 011313 223 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 252 (489)
Q Consensus 223 ~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~ 252 (489)
.-||..|.-.|.+ |..|+.|.+|+.-+
T Consensus 5 ~GYCE~C~~ky~~---l~~Hi~s~~Hr~FA 31 (49)
T PF07535_consen 5 PGYCENCRVKYDD---LEEHIQSEKHRKFA 31 (49)
T ss_pred CccCccccchhhh---HHHHhCCHHHHHHH
Confidence 4599999999986 88999999998654
No 91
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=89.29 E-value=0.23 Score=38.12 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=24.5
Q ss_pred cCcccccccccccCChHHHHHhhhhHHHHHHHH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVA 253 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~ 253 (489)
....||..|...|. -|..|+.|++|+.=..
T Consensus 3 ~k~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~ 32 (49)
T smart00586 3 KKPGYCENCREKYD---DLETHLLSEKHRRFAE 32 (49)
T ss_pred CCCcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence 34569999999998 5788999999986443
No 92
>PHA02768 hypothetical protein; Provisional
Probab=87.47 E-value=0.34 Score=38.03 Aligned_cols=25 Identities=24% Similarity=0.650 Sum_probs=22.8
Q ss_pred cccccccccccCChHHHHHhhhhHHHH
Q 011313 223 EFYCVLCGKKFKSEKQWTNHEQSKKHK 249 (489)
Q Consensus 223 ~~~C~~C~K~Fks~~~~~nH~~SkkHk 249 (489)
.|.|..|+|.|.....|..|.++ |.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~--H~ 29 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRK--HN 29 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHh--cC
Confidence 47899999999999999999988 65
No 93
>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]
Probab=85.69 E-value=0.94 Score=42.90 Aligned_cols=40 Identities=28% Similarity=0.576 Sum_probs=31.6
Q ss_pred cccccccccc--cCChHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 011313 223 EFYCVLCGKK--FKSEKQWTNHEQSKKHKEKVADLRESFVDE 262 (489)
Q Consensus 223 ~~~C~~C~K~--Fks~~~~~nH~~SkkHk~~~~~l~~~~~~e 262 (489)
-|||..|+.. --|...-+.|+..+||+.+|+-.=+++.+|
T Consensus 3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~ee 44 (165)
T KOG3454|consen 3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWMEE 44 (165)
T ss_pred cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3799999953 346678899999999999999886665543
No 94
>PHA00616 hypothetical protein
Probab=82.43 E-value=0.67 Score=34.80 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=20.2
Q ss_pred ccccccccccCChHHHHHhhhh
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQS 245 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~S 245 (489)
+-|.-|++.|.....|..|+++
T Consensus 2 YqC~~CG~~F~~~s~l~~H~r~ 23 (44)
T PHA00616 2 YQCLRCGGIFRKKKEVIEHLLS 23 (44)
T ss_pred CccchhhHHHhhHHHHHHHHHH
Confidence 6799999999999999999954
No 95
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=81.01 E-value=1.6 Score=43.26 Aligned_cols=37 Identities=35% Similarity=0.650 Sum_probs=29.7
Q ss_pred CcccccccccccCChHHHHHhhhhHHHHHHHHHHHHHh
Q 011313 222 SEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 259 (489)
Q Consensus 222 ~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~~~ 259 (489)
.-|-|..|.|.|+-..=+..|+. +||-+.|..+++++
T Consensus 76 ~K~~C~lc~KlFkg~eFV~KHI~-nKH~e~ve~~~~ev 112 (214)
T PF04959_consen 76 DKWRCPLCGKLFKGPEFVRKHIF-NKHPEKVEEVKKEV 112 (214)
T ss_dssp EEEEE-SSS-EESSHHHHHHHHH-HH-HHHHHHHHHHH
T ss_pred CEECCCCCCcccCChHHHHHHHh-hcCHHHHHHHHHHH
Confidence 35899999999999999999997 57999999888654
No 96
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=80.26 E-value=3 Score=38.10 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=34.5
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcC
Q 011313 9 YEVLGLRKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSD 65 (489)
Q Consensus 9 YevLGV~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsD 65 (489)
..||||++.++.++|.+.|..|-...+|++... .-.=-.|..|.++|..
T Consensus 61 ~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS--------fYLQSKV~rAKErl~~ 109 (127)
T PF03656_consen 61 RQILNVKEELSREEIQKRYKHLFKANDPSKGGS--------FYLQSKVFRAKERLEQ 109 (127)
T ss_dssp HHHHT--G--SHHHHHHHHHHHHHHT-CCCTS---------HHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC--------HHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999998721 3334467778887763
No 97
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=74.93 E-value=2.4 Score=27.83 Aligned_cols=21 Identities=33% Similarity=0.828 Sum_probs=17.9
Q ss_pred ccccccccccCChHHHHHhhhh
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQS 245 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~S 245 (489)
.-|..|++.| ...++..|++.
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 4699999999 88899999753
No 98
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.97 E-value=24 Score=40.99 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=9.0
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 011313 14 LRKECTTDEIRSAYKKLA 31 (489)
Q Consensus 14 V~~~As~~eIKkAYRkla 31 (489)
+...|-+.--|.-||.|-
T Consensus 184 ~~eWAVp~~~klKY~QlF 201 (1118)
T KOG1029|consen 184 LEEWAVPQHNKLKYRQLF 201 (1118)
T ss_pred hhhccccchhhhHHHHHh
Confidence 333444444455666654
No 99
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=68.64 E-value=3.6 Score=40.05 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=32.8
Q ss_pred cCcccccccccccCChHHHHHhhhhHHHHHHHHHHHH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~ 257 (489)
..-|.|..|.-.-.|+..|..|...|||..+|+.-..
T Consensus 51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarraa 87 (222)
T KOG0227|consen 51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAA 87 (222)
T ss_pred CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHHH
Confidence 3567899999999999999999999999999886544
No 100
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=64.90 E-value=3.8 Score=39.63 Aligned_cols=35 Identities=31% Similarity=0.658 Sum_probs=31.9
Q ss_pred cCcccccccccccCChHHHHHhhhhHHHHHHHHHH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 255 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l 255 (489)
..-|.|..|.-.-.|.+.|..|...|||+.++..-
T Consensus 51 ~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr 85 (222)
T COG5246 51 TGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR 85 (222)
T ss_pred CCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence 45789999999999999999999999999998754
No 101
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=63.75 E-value=1.9 Score=42.20 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=29.1
Q ss_pred ccCcccccccccccCChHHHHHhhhhHHHHHHHHHHH
Q 011313 220 KRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLR 256 (489)
Q Consensus 220 ~~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~ 256 (489)
....|||.+|+..|.. +.+.||..|=-|+-++..+-
T Consensus 81 ~e~lfyCE~Cd~~ip~-~~~snH~tSttHllsl~~~p 116 (223)
T KOG2384|consen 81 DEALFYCEVCDIYIPN-SKKSNHFTSTTHLLSLQHIP 116 (223)
T ss_pred CCccchhhhhhhhccC-CCCccchhhHHHHhhhccCC
Confidence 3467999999987764 67899999999998777554
No 102
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=59.57 E-value=3.8 Score=26.89 Aligned_cols=14 Identities=36% Similarity=0.992 Sum_probs=12.0
Q ss_pred CcccccccccccCC
Q 011313 222 SEFYCVLCGKKFKS 235 (489)
Q Consensus 222 ~~~~C~~C~K~Fks 235 (489)
..|.|..|++.|.+
T Consensus 13 k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 13 KPYKCPYCGKSFSN 26 (26)
T ss_dssp SSEEESSSSEEESS
T ss_pred CCCCCCCCcCeeCc
Confidence 46899999999975
No 103
>PHA00732 hypothetical protein
Probab=56.45 E-value=7.3 Score=32.60 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.8
Q ss_pred ccccccccccCChHHHHHhhhh
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQS 245 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~S 245 (489)
|-|..|++.|.+...+..|.++
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~ 23 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARR 23 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhc
Confidence 6799999999999999999863
No 104
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=55.67 E-value=15 Score=38.34 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=29.6
Q ss_pred cccccccccccCCh-HHHHHhhhhHHHHHHHHHHHHHh
Q 011313 223 EFYCVLCGKKFKSE-KQWTNHEQSKKHKEKVADLRESF 259 (489)
Q Consensus 223 ~~~C~~C~K~Fks~-~~~~nH~~SkkHk~~~~~l~~~~ 259 (489)
-.||.+|.--|++. .+..+|++.+.|+.+|++--..|
T Consensus 10 kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kritdi 47 (336)
T KOG0150|consen 10 KKFCDYCKIWIKDNPASVRFHERGKRHKENVAKRITDI 47 (336)
T ss_pred chhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHHHHHH
Confidence 45899998888765 46789999999999998654444
No 105
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=51.79 E-value=28 Score=31.10 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhcCc
Q 011313 16 KECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLSDP 66 (489)
Q Consensus 16 ~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLsDp 66 (489)
+..+..+++.|.|.+-++.|||...........-..-++.|+.-.+.|..+
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 345667899999999999999977432211222344566666666666543
No 106
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=51.00 E-value=7.9 Score=38.72 Aligned_cols=24 Identities=33% Similarity=0.857 Sum_probs=21.8
Q ss_pred cCcccccccccccCChHHHHHhhh
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQ 244 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~ 244 (489)
.+-|||..|+-.|++.-.|..|+-
T Consensus 237 ~eh~YC~fCG~~y~~~edl~ehCP 260 (268)
T KOG1994|consen 237 SEHYYCFFCGIKYKDEEDLYEHCP 260 (268)
T ss_pred ccceEEEEeccccCCHHHHHHhCC
Confidence 478999999999999999999973
No 107
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=50.83 E-value=5.7 Score=41.88 Aligned_cols=32 Identities=25% Similarity=0.638 Sum_probs=28.5
Q ss_pred hccCcccccccccccCChHHHHHhhhhHHHHH
Q 011313 219 KKRSEFYCVLCGKKFKSEKQWTNHEQSKKHKE 250 (489)
Q Consensus 219 ~~~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~ 250 (489)
+.-+-|.|-.|.|.|+..+.|..|.+-|.|++
T Consensus 191 ekL~r~~CLyCekifrdkntLkeHMrkK~Hrr 222 (423)
T KOG2482|consen 191 EKLERLRCLYCEKIFRDKNTLKEHMRKKRHRR 222 (423)
T ss_pred HHHhhheeeeeccccCCcHHHHHHHHhccCcc
Confidence 34567899999999999999999999999984
No 108
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=50.70 E-value=1.6e+02 Score=29.41 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=12.8
Q ss_pred hhCHHHHhHHHHhHHHHHH
Q 011313 149 KRDKRVMDMMVKKNEEIER 167 (489)
Q Consensus 149 krDpRv~~~~~~~~~eeer 167 (489)
.||||+..++.+...++.+
T Consensus 175 prdprF~eml~~kEkeeKK 193 (217)
T PF10147_consen 175 PRDPRFQEMLQEKEKEEKK 193 (217)
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 6899998887655444443
No 109
>PF13446 RPT: A repeated domain in UCH-protein
Probab=50.50 E-value=30 Score=26.97 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.5
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHH
Q 011313 7 CLYEVLGLRKECTTDEIRSAYKKLAL 32 (489)
Q Consensus 7 dyYevLGV~~~As~~eIKkAYRklal 32 (489)
.-|++|||+++++.+.|-.+|.....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 35999999999999999999998776
No 110
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=49.01 E-value=7.5 Score=30.85 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=20.8
Q ss_pred CcccccccccccCChHHHHHhhh
Q 011313 222 SEFYCVLCGKKFKSEKQWTNHEQ 244 (489)
Q Consensus 222 ~~~~C~~C~K~Fks~~~~~nH~~ 244 (489)
.-|-|+-|+..|...+.|..|.+
T Consensus 16 ~~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 16 EFLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred eeeeCCchhHHHHHhHHHHHHhh
Confidence 35689999999999999999985
No 111
>PTZ00448 hypothetical protein; Provisional
Probab=48.92 E-value=14 Score=39.41 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=32.6
Q ss_pred cccccccccccCChHHHHHhhhhHHHHHHHHHHHHHh
Q 011313 223 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 259 (489)
Q Consensus 223 ~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~~~ 259 (489)
.|.|..|+-.|.+...+..|.+|-=|+=|+++--..+
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~gL 350 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKM 350 (373)
T ss_pred CccccccccccCCHHHHHHHhhhhHHHHHHHHHhcCC
Confidence 5789999999999999999999999999988665443
No 112
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=47.90 E-value=13 Score=24.65 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=17.0
Q ss_pred ccccccccccCChHHHHHhhh
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQ 244 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~ 244 (489)
..|++|++.+ +..++..|+.
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 4699999999 7788888875
No 113
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=46.07 E-value=18 Score=34.48 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=31.9
Q ss_pred ccccccccccCChHHHHHhhhhHHHHHHHHHHHHHhh
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESFV 260 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~~~~ 260 (489)
|.|..|.=.=-.+..+..|+.|+-|++-+..|...+-
T Consensus 1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl~ 37 (165)
T PF04988_consen 1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKLP 37 (165)
T ss_pred CccceeeeecccHHHHHHHHccchHHHHHHHHHhcCC
Confidence 6899998777778999999999999999998866553
No 114
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=45.95 E-value=9.3 Score=38.55 Aligned_cols=25 Identities=28% Similarity=0.702 Sum_probs=22.1
Q ss_pred cccccccccccCChHHHHHhhhhHH
Q 011313 223 EFYCVLCGKKFKSEKQWTNHEQSKK 247 (489)
Q Consensus 223 ~~~C~~C~K~Fks~~~~~nH~~Skk 247 (489)
--.|..||+-|-.++-|+.|.+-|-
T Consensus 10 kpwcwycnrefddekiliqhqkakh 34 (341)
T KOG2893|consen 10 KPWCWYCNREFDDEKILIQHQKAKH 34 (341)
T ss_pred Cceeeecccccchhhhhhhhhhhcc
Confidence 3479999999999999999998764
No 115
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=43.89 E-value=1.3e+02 Score=36.64 Aligned_cols=10 Identities=10% Similarity=-0.140 Sum_probs=4.1
Q ss_pred ccccccccCC
Q 011313 226 CVLCGKKFKS 235 (489)
Q Consensus 226 C~~C~K~Fks 235 (489)
|..|.-...+
T Consensus 563 ~~~~~~~~~~ 572 (1021)
T PTZ00266 563 RNHSGVRSGI 572 (1021)
T ss_pred CCcccccccc
Confidence 4444443333
No 116
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=42.09 E-value=13 Score=38.20 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=24.4
Q ss_pred cCcccccccccccCChHHHHHhhhhHH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKK 247 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~Skk 247 (489)
...|.|..|+|.|-++-+|.-|+++-.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~ 185 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHT 185 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccC
Confidence 567899999999999999999999854
No 117
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=41.74 E-value=8.9 Score=41.13 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=23.9
Q ss_pred cCcccccccccccCChHHHHHhhhhHHHHHHH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 252 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~ 252 (489)
...-||..|.-.|.+ |..|+.|++|++-.
T Consensus 420 tk~GYCENCreky~~---lE~Hi~s~~HrrFA 448 (468)
T COG5067 420 TKKGYCENCREKYES---LEQHIVSEKHRRFA 448 (468)
T ss_pred cccchhHHHHHHHHH---HHHHhhhhhhhhhh
Confidence 344699999999975 78999999998643
No 118
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=40.99 E-value=5.6 Score=27.17 Aligned_cols=19 Identities=32% Similarity=0.871 Sum_probs=14.8
Q ss_pred ccccccccccCChHHHHHhh
Q 011313 224 FYCVLCGKKFKSEKQWTNHE 243 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~ 243 (489)
|.|+-|.+.| +...|++|-
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht 19 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHT 19 (28)
T ss_dssp EEETTTTEEE-EGGGTTT--
T ss_pred CeeecCCCCc-CcCCcCCCC
Confidence 5799999999 777888885
No 119
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=40.69 E-value=39 Score=34.09 Aligned_cols=18 Identities=39% Similarity=0.861 Sum_probs=13.9
Q ss_pred CcccccccccccCChHHH
Q 011313 222 SEFYCVLCGKKFKSEKQW 239 (489)
Q Consensus 222 ~~~~C~~C~K~Fks~~~~ 239 (489)
-..||++|+-.+...+++
T Consensus 83 ~~~~Cv~Cg~~i~~~~a~ 100 (236)
T PF12269_consen 83 LSIYCVTCGHEIPSKKAL 100 (236)
T ss_pred eeeeeeeCCCcCCHHHHH
Confidence 356999999988776655
No 120
>PF14968 CCDC84: Coiled coil protein 84
Probab=40.39 E-value=16 Score=38.56 Aligned_cols=32 Identities=25% Similarity=0.576 Sum_probs=26.6
Q ss_pred cccccccccCChHHHHHhhhhHHHHHHHHHHHHHh
Q 011313 225 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 259 (489)
Q Consensus 225 ~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~~~ 259 (489)
||.+|+..+-. ...|.=|++|++.|..+-..+
T Consensus 1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~rf 32 (336)
T PF14968_consen 1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSRF 32 (336)
T ss_pred CcchhhCcccc---cCCCccCHHHHHHHHHHHHHH
Confidence 89999998765 999999999999988764333
No 121
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=39.97 E-value=24 Score=26.91 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.9
Q ss_pred cccccccccccCChHHHHHhhhh
Q 011313 223 EFYCVLCGKKFKSEKQWTNHEQS 245 (489)
Q Consensus 223 ~~~C~~C~K~Fks~~~~~nH~~S 245 (489)
.|-|+.|++ -.+...|..|...
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~ 23 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCED 23 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHh
Confidence 478999999 5678899999764
No 122
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=37.69 E-value=11 Score=30.96 Aligned_cols=28 Identities=29% Similarity=0.605 Sum_probs=0.0
Q ss_pred cccccccccCChHHHHHhhhhHHHHHHHH
Q 011313 225 YCVLCGKKFKSEKQWTNHEQSKKHKEKVA 253 (489)
Q Consensus 225 ~C~~C~K~Fks~~~~~nH~~SkkHk~~~~ 253 (489)
.|..|+..|.+..++..|+. ..|.-.+.
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~-~~H~~~~~ 28 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMK-KKHGFDIP 28 (100)
T ss_dssp -----------------------------
T ss_pred Cccccccccccccccccccc-cccccccc
Confidence 39999999999999999995 56655444
No 123
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=36.30 E-value=20 Score=36.83 Aligned_cols=27 Identities=30% Similarity=0.615 Sum_probs=23.6
Q ss_pred CcccccccccccCChHHHHHhhhhHHH
Q 011313 222 SEFYCVLCGKKFKSEKQWTNHEQSKKH 248 (489)
Q Consensus 222 ~~~~C~~C~K~Fks~~~~~nH~~SkkH 248 (489)
..|-|..|+|.|....-|..|+++--+
T Consensus 214 KPF~C~hC~kAFADRSNLRAHmQTHS~ 240 (279)
T KOG2462|consen 214 KPFSCPHCGKAFADRSNLRAHMQTHSD 240 (279)
T ss_pred CCccCCcccchhcchHHHHHHHHhhcC
Confidence 579999999999999999999987543
No 124
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=35.82 E-value=11 Score=43.47 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=28.1
Q ss_pred cCcccccccccccCChHHHHHhhhhHHHHHHH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKV 252 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~ 252 (489)
...|.|..|.|.|..-..|-.|+.|||-.-.+
T Consensus 307 EKPfeCpnCkKRFSHSGSySSHmSSKKCIsli 338 (1007)
T KOG3623|consen 307 EKPFECPNCKKRFSHSGSYSSHMSSKKCISLI 338 (1007)
T ss_pred CCCcCCcccccccccCCcccccccccchhhhh
Confidence 35789999999999999999999999987443
No 125
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=35.56 E-value=1.5e+02 Score=32.44 Aligned_cols=31 Identities=29% Similarity=0.552 Sum_probs=28.8
Q ss_pred cccccccccCChHHHHHhhhhHHHHHHHHHH
Q 011313 225 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADL 255 (489)
Q Consensus 225 ~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l 255 (489)
-|..|+-...|+--|-.|.+.+||...|..|
T Consensus 495 qcslcnvlissevylfshvkgrkhqqal~e~ 525 (672)
T KOG4722|consen 495 QCSLCNVLISSEVYLFSHVKGRKHQQALNEL 525 (672)
T ss_pred ccchhhhhhhhhhhhhhhhcchhHHHHHHHH
Confidence 5999999999999999999999999988755
No 126
>PHA00733 hypothetical protein
Probab=34.90 E-value=26 Score=31.77 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=20.4
Q ss_pred cccccccccccCChHHHHHhhhhHHH
Q 011313 223 EFYCVLCGKKFKSEKQWTNHEQSKKH 248 (489)
Q Consensus 223 ~~~C~~C~K~Fks~~~~~nH~~SkkH 248 (489)
.|-|..|++.|.....|..|.. ++|
T Consensus 99 ~~~C~~CgK~F~~~~sL~~H~~-~~h 123 (128)
T PHA00733 99 SKVCPVCGKEFRNTDSTLDHVC-KKH 123 (128)
T ss_pred CccCCCCCCccCCHHHHHHHHH-Hhc
Confidence 4789999999999999999854 344
No 127
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=33.63 E-value=78 Score=31.12 Aligned_cols=34 Identities=29% Similarity=0.609 Sum_probs=0.0
Q ss_pred Ccccccccc-cccCChHHHHHhhhhHHHHHHHHHH
Q 011313 222 SEFYCVLCG-KKFKSEKQWTNHEQSKKHKEKVADL 255 (489)
Q Consensus 222 ~~~~C~~C~-K~Fks~~~~~nH~~SkkHk~~~~~l 255 (489)
-.|+|.+|+ .+|.=.++|..|..--.|.--+.-|
T Consensus 100 ~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcL 134 (196)
T PF11931_consen 100 VEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCL 134 (196)
T ss_dssp -----------------------------------
T ss_pred CeeeeEeCCCcceecHHHHHHhcChhHHHccChhc
Confidence 378999995 6788999999999999998776655
No 128
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=33.57 E-value=87 Score=30.54 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCcCCCCCChHHHHHHHHHHHHHHHHhc
Q 011313 15 RKECTTDEIRSAYKKLALQRHPDKLVQSGLSQAEATAQFQELVHAYEVLS 64 (489)
Q Consensus 15 ~~~As~~eIKkAYRklalk~HPDKn~~~~~~~~~a~~~F~~I~~AYevLs 64 (489)
+++||.+||..|+..|..+|--|. ..-..|-.||+.|.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~------------~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDE------------KSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHHHH
Confidence 468999999999999999994432 34456889998755
No 129
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=32.75 E-value=34 Score=36.73 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=32.3
Q ss_pred cccccccccccCChHHHHHhhhhHHHHHHHHHHHHHh
Q 011313 223 EFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 259 (489)
Q Consensus 223 ~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~~~ 259 (489)
.|.|..|+..|.+.-.-..|-+|-=|+=||++--..|
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~l 39 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASL 39 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcC
Confidence 4789999999999999999999999998887554444
No 130
>PHA00733 hypothetical protein
Probab=31.74 E-value=30 Score=31.37 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.5
Q ss_pred CcccccccccccCChHHHHHhhhh
Q 011313 222 SEFYCVLCGKKFKSEKQWTNHEQS 245 (489)
Q Consensus 222 ~~~~C~~C~K~Fks~~~~~nH~~S 245 (489)
..|.|..|++.|.+...|..|.+.
T Consensus 72 kPy~C~~Cgk~Fss~s~L~~H~r~ 95 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVSLKQHIRY 95 (128)
T ss_pred CCccCCCCCCcCCCHHHHHHHHhc
Confidence 458999999999999999999874
No 131
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=31.01 E-value=26 Score=25.35 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=15.4
Q ss_pred CcccccccccccCCh----HHHHHhhh
Q 011313 222 SEFYCVLCGKKFKSE----KQWTNHEQ 244 (489)
Q Consensus 222 ~~~~C~~C~K~Fks~----~~~~nH~~ 244 (489)
....|..|++.|+.. +.|..|++
T Consensus 15 ~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 15 KKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp S-EEETTTTEE-----SSTHHHHHHHH
T ss_pred CeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 456899999999874 78999983
No 132
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=30.98 E-value=1.4e+02 Score=29.46 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=12.7
Q ss_pred HhhCHHHHhHHHHhHHHHH
Q 011313 148 KKRDKRVMDMMVKKNEEIE 166 (489)
Q Consensus 148 kkrDpRv~~~~~~~~~eee 166 (489)
--||||+..++++++.++.
T Consensus 185 Dprd~RF~emLqqkEkeek 203 (225)
T KOG4848|consen 185 DPRDPRFEEMLQQKEKEEK 203 (225)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3789999887665544443
No 133
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=30.66 E-value=45 Score=25.45 Aligned_cols=30 Identities=37% Similarity=0.717 Sum_probs=15.3
Q ss_pred cccccccccCChHHHHHhhhhHHHHHHHHHHHH
Q 011313 225 YCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (489)
Q Consensus 225 ~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~ 257 (489)
-|++|...|..... ..-.+++...+..+..
T Consensus 22 ~CPlC~r~l~~e~~---~~li~~~~~~i~~~~~ 51 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR---QELIKKYKSEIEELPE 51 (54)
T ss_dssp E-TTT--EE-HHHH---HHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHH---HHHHHHHHHHHHhhhh
Confidence 79999999987765 3333444444444443
No 134
>PF14968 CCDC84: Coiled coil protein 84
Probab=30.48 E-value=40 Score=35.67 Aligned_cols=66 Identities=14% Similarity=0.315 Sum_probs=41.8
Q ss_pred CcccccccccccCCh------HHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhcCCCchhhHHHhHHhhhcc
Q 011313 222 SEFYCVLCGKKFKSE------KQWTNHEQSKKHKEKVADLRESFVDEDEVMADFGELDGEVEELGERFKDNV 287 (489)
Q Consensus 222 ~~~~C~~C~K~Fks~------~~~~nH~~SkkHk~~~~~l~~~~~~e~~~~~~~~~~e~~~~~l~~~l~~~l 287 (489)
.-|.|+.|+---... .-++.|+.|..|+++|...-++-.-+-......-..+...+..+..+...|
T Consensus 57 ~~fWC~fC~~ev~~~~s~~~~~~ai~HLaS~eH~k~vk~F~w~~g~~~d~~d~f~Is~~d~~r~kk~~~~~l 128 (336)
T PF14968_consen 57 NRFWCVFCDCEVREHDSSFACGGAIEHLASPEHRKNVKKFWWKNGADMDLKDKFRISEEDYARFKKKCEKAL 128 (336)
T ss_pred ceeEeeCccchhhhccchhhhccHHhhcCCHHHHHHHHHHHHHcCCCcccccceeecHHHHHHHHHHHHHHH
Confidence 457899999877655 467899999999999999866544333333333233344444444444444
No 135
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=29.90 E-value=2e+02 Score=32.00 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=23.1
Q ss_pred CCCCCCCCcccchhhHHHhHHHHH---HHHHHHHHHHHHHHHHH
Q 011313 107 GYSDSGPNRKSRRVMEEENKKLRK---KAKREYNETVRELAAFV 147 (489)
Q Consensus 107 g~~d~a~~R~~RR~mEkeNkk~r~---k~kkeyn~~Ir~Lv~~~ 147 (489)
+-.+-...|.++|.+.+..+..+. ...+-+..-|+++-..+
T Consensus 177 ~~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvkKrDpRv 220 (508)
T KOG0717|consen 177 EESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVKKRDPRV 220 (508)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 345556678888888887654443 33444444444443333
No 136
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=29.35 E-value=26 Score=41.04 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=20.8
Q ss_pred ccccccccccCChHHHHHhhhh
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQS 245 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~S 245 (489)
-||.+|+|.|.+..+|+.|.++
T Consensus 880 h~C~vCgk~FsSSsALqiH~rT 901 (958)
T KOG1074|consen 880 HVCNVCGKQFSSSAALEIHMRT 901 (958)
T ss_pred hhhccchhcccchHHHHHhhhc
Confidence 5899999999999999999986
No 137
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=28.38 E-value=51 Score=36.69 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=33.3
Q ss_pred ccCcccccccccccCChHHHHHhhhhHHHHHHHHHHHH
Q 011313 220 KRSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRE 257 (489)
Q Consensus 220 ~~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~ 257 (489)
..+.+.|..|.-.|.|......|.+|=-|+-++++--.
T Consensus 63 ~sd~~~CstCq~~F~s~~eqr~HyksD~HR~N~Krkl~ 100 (591)
T KOG2505|consen 63 ISDSDQCSTCQIPFGSRQEQREHYKSDWHRFNTKRKLR 100 (591)
T ss_pred hcccccccccCCccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999885443
No 138
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=27.88 E-value=34 Score=28.50 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.7
Q ss_pred cCcccccccccccCChHHHHHhhhhH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSK 246 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~Sk 246 (489)
.+.||+..|+|.|.|..++..++...
T Consensus 26 ~DvyY~sP~Gkk~RS~~ev~~yL~~~ 51 (77)
T cd01396 26 FDVYYISPTGKKFRSKVELARYLEKN 51 (77)
T ss_pred ceEEEECCCCCEEECHHHHHHHHHhC
Confidence 46799999999999999999888653
No 139
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=27.29 E-value=33 Score=26.85 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=19.2
Q ss_pred CcccccccccccCChHHHHHhh
Q 011313 222 SEFYCVLCGKKFKSEKQWTNHE 243 (489)
Q Consensus 222 ~~~~C~~C~K~Fks~~~~~nH~ 243 (489)
.-+||.-|+-.|.+...|..|.
T Consensus 26 ~~~YC~~Cg~~Y~d~~dL~~~C 47 (55)
T PF13821_consen 26 EHNYCFWCGTKYDDEEDLERNC 47 (55)
T ss_pred hCceeeeeCCccCCHHHHHhCC
Confidence 4679999999999999998764
No 140
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=25.37 E-value=26 Score=38.35 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=30.7
Q ss_pred cCcccccccccccCChHHHHHhhhhHHHHHHHHHHHHHh
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSKKHKEKVADLRESF 259 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~SkkHk~~~~~l~~~~ 259 (489)
.+.|||+.|.+.|.--.+|--|..++-|-+.........
T Consensus 247 ~Eel~~~g~erlk~al~alglk~gGt~~~ra~rlf~Tk~ 285 (497)
T KOG2636|consen 247 VEELYCLGCERLKSALTALGLKCGGTLHERAQRLFSTKS 285 (497)
T ss_pred HHHHHhhchhHHHHHHHHHHHhcCCeecHHHHhhhhhcC
Confidence 356899999998888889999998888887777665444
No 141
>PHA00732 hypothetical protein
Probab=24.29 E-value=27 Score=29.23 Aligned_cols=21 Identities=24% Similarity=0.543 Sum_probs=17.2
Q ss_pred ccccccccccCChHHHHHhhhhHH
Q 011313 224 FYCVLCGKKFKSEKQWTNHEQSKK 247 (489)
Q Consensus 224 ~~C~~C~K~Fks~~~~~nH~~Skk 247 (489)
+.|..|++.|. .+..|..||-
T Consensus 28 ~~C~~CgKsF~---~l~~H~~~~~ 48 (79)
T PHA00732 28 TKCPVCNKSYR---RLNQHFYSQY 48 (79)
T ss_pred CccCCCCCEeC---ChhhhhcccC
Confidence 47999999998 5888887764
No 142
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=24.10 E-value=39 Score=31.11 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=14.3
Q ss_pred cCcccccccccccCChHHHHHhhhhH
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQSK 246 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~Sk 246 (489)
.+...|-.|+|.|++- +.|+.+.
T Consensus 70 ~d~i~clecGk~~k~L---krHL~~~ 92 (132)
T PF05443_consen 70 PDYIICLECGKKFKTL---KRHLRTH 92 (132)
T ss_dssp SS-EE-TBT--EESBH---HHHHHHT
T ss_pred cCeeEEccCCcccchH---HHHHHHc
Confidence 3556999999999986 6777654
No 143
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=22.91 E-value=23 Score=37.20 Aligned_cols=23 Identities=22% Similarity=0.611 Sum_probs=20.0
Q ss_pred cCcccccccccccCChHHHHHhh
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHE 243 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~ 243 (489)
...|.|++|+|.+|+.+-|+=|.
T Consensus 396 ~KPYrCevC~KRYKNlNGLKYHr 418 (423)
T COG5189 396 DKPYRCEVCDKRYKNLNGLKYHR 418 (423)
T ss_pred CCceeccccchhhccCccceecc
Confidence 35778999999999999998875
No 144
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=22.81 E-value=54 Score=25.81 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=21.8
Q ss_pred cCcccccccccccCChHHHHHhhhh
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQS 245 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~S 245 (489)
.+.+|...|+|.|.|..++..++..
T Consensus 25 ~dv~Y~sP~Gk~~Rs~~ev~~yL~~ 49 (62)
T cd00122 25 GDVYYYSPCGKKLRSKPEVARYLEK 49 (62)
T ss_pred ceEEEECCCCceecCHHHHHHHHHh
Confidence 4678999999999999999888764
No 145
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=22.15 E-value=37 Score=37.03 Aligned_cols=28 Identities=29% Similarity=0.648 Sum_probs=23.9
Q ss_pred CcccccccccccCChHHHHHhhhhHHHH
Q 011313 222 SEFYCVLCGKKFKSEKQWTNHEQSKKHK 249 (489)
Q Consensus 222 ~~~~C~~C~K~Fks~~~~~nH~~SkkHk 249 (489)
.+|.|..|.|.|....-|..|.-|-...
T Consensus 355 gi~~C~~C~KkFrRqAYLrKHqlthq~~ 382 (500)
T KOG3993|consen 355 GIFSCHTCGKKFRRQAYLRKHQLTHQRA 382 (500)
T ss_pred ceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence 5899999999999999999997765443
No 146
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=21.90 E-value=37 Score=39.84 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.7
Q ss_pred cccccccccCChHHHHHhhhhH
Q 011313 225 YCVLCGKKFKSEKQWTNHEQSK 246 (489)
Q Consensus 225 ~C~~C~K~Fks~~~~~nH~~Sk 246 (489)
.|-.|.|+|.+..+|+-|++|-
T Consensus 355 kCr~CakvfgS~SaLqiHlRSH 376 (958)
T KOG1074|consen 355 KCRFCAKVFGSDSALQIHLRSH 376 (958)
T ss_pred hhhhhHhhcCchhhhhhhhhcc
Confidence 6999999999999999999983
No 147
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=21.52 E-value=2.6e+02 Score=23.56 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=26.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 011313 6 RCLYEVLGLRKECTTDEIRSAYKKLALQRHPD 37 (489)
Q Consensus 6 ~dyYevLGV~~~As~~eIKkAYRklalk~HPD 37 (489)
++.-+++|+.|-|++.+|+.|-++.+.++.--
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGt 34 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGT 34 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCC
Confidence 45668899999999999999988877776433
No 148
>PLN03086 PRLI-interacting factor K; Provisional
Probab=21.19 E-value=4.2e+02 Score=30.20 Aligned_cols=11 Identities=36% Similarity=0.531 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 011313 127 KLRKKAKREYN 137 (489)
Q Consensus 127 k~r~k~kkeyn 137 (489)
..+.++.++-.
T Consensus 7 ~~~~~~~~~~~ 17 (567)
T PLN03086 7 RAREKLEREQR 17 (567)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 149
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=20.26 E-value=62 Score=26.89 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=21.9
Q ss_pred cCcccccccccccCChHHHHHhhhh
Q 011313 221 RSEFYCVLCGKKFKSEKQWTNHEQS 245 (489)
Q Consensus 221 ~~~~~C~~C~K~Fks~~~~~nH~~S 245 (489)
.+.+|...|+|.|.|..++..++..
T Consensus 28 ~dV~Y~sP~GkklRs~~ev~~YL~~ 52 (77)
T smart00391 28 FDVYYISPCGKKLRSKSELARYLHK 52 (77)
T ss_pred ccEEEECCCCCeeeCHHHHHHHHHh
Confidence 4688999999999999999888754
Done!