Query 011315
Match_columns 488
No_of_seqs 228 out of 454
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:35:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x3z_A Peptide: N-glycanase; h 100.0 3.4E-82 1.2E-86 638.7 22.8 258 1-262 58-320 (335)
2 2f4m_A Peptide N-glycanase; gl 100.0 2.6E-73 8.7E-78 567.4 27.9 261 1-261 18-281 (295)
3 2qsf_A RAD4, DNA repair protei 100.0 5.5E-35 1.9E-39 311.1 13.5 278 2-321 63-388 (533)
4 3isr_A Transglutaminase-like e 99.5 2.4E-13 8.1E-18 135.3 12.1 121 14-187 122-249 (293)
5 2g9g_A Pngase, peptide N-glyca 99.4 1.2E-16 4.2E-21 154.0 -13.1 132 266-406 16-155 (221)
6 2q3z_A Transglutaminase 2; tra 98.8 2.6E-09 9E-14 117.0 6.9 54 119-172 273-363 (687)
7 1ex0_A Coagulation factor XIII 98.7 1.4E-08 4.8E-13 111.9 6.0 58 113-170 300-399 (731)
8 1vjj_A Protein-glutamine gluta 98.7 1.7E-08 5.8E-13 110.7 6.4 58 114-171 258-357 (692)
9 1g0d_A Protein-glutamine gamma 98.6 2.3E-08 7.8E-13 109.6 6.8 58 114-171 258-359 (695)
10 3kd4_A Putative protease; stru 98.3 6.6E-07 2.3E-11 94.5 7.3 89 43-171 245-346 (506)
11 2i74_A Pngase; beta-sandwich, 97.2 1.2E-06 4.3E-11 82.8 -10.8 101 296-405 7-114 (189)
12 4fgq_A Periplasmic protein; DU 94.3 0.069 2.4E-06 50.7 6.4 111 43-198 44-164 (193)
13 2bsz_A Arylamine N-acetyltrans 61.6 26 0.00087 34.2 8.4 66 114-181 63-143 (278)
14 3lnb_A N-acetyltransferase fam 61.2 15 0.00051 36.8 6.8 56 114-171 89-157 (309)
15 1w4t_A Arylamine N-acetyltrans 59.9 6 0.00021 39.2 3.6 67 113-181 82-164 (299)
16 2ija_A Arylamine N-acetyltrans 59.6 6.2 0.00021 38.8 3.7 65 114-180 63-143 (295)
17 3d9w_A Putative acetyltransfer 59.2 7.9 0.00027 38.2 4.4 57 114-171 72-140 (293)
18 1e2t_A NAT, N-hydroxyarylamine 58.7 7.2 0.00025 38.2 3.9 67 113-181 61-141 (284)
19 1w5r_A Arylamine N-acetyltrans 57.2 6.6 0.00023 38.4 3.4 65 114-180 63-145 (278)
20 2vfb_A Arylamine N-acetyltrans 56.5 25 0.00086 34.3 7.4 65 114-180 60-142 (280)
21 1tfi_A Transcriptional elongat 51.8 8.8 0.0003 28.7 2.5 41 61-106 8-49 (50)
22 3u50_C Telomerase-associated p 50.8 7.7 0.00026 35.9 2.5 72 46-166 27-103 (172)
23 1vk6_A NADH pyrophosphatase; 1 47.1 10 0.00036 36.7 2.9 46 44-110 95-140 (269)
24 1l1o_C Replication protein A 7 46.3 16 0.00056 33.4 3.9 73 46-168 29-109 (181)
25 1qyp_A RNA polymerase II; tran 45.0 9.6 0.00033 28.6 1.8 37 63-104 16-53 (57)
26 3po3_S Transcription elongatio 42.9 13 0.00044 34.5 2.7 42 60-106 135-177 (178)
27 2fiy_A Protein FDHE homolog; F 42.5 14 0.00046 37.1 3.0 15 90-104 249-263 (309)
28 2akl_A PHNA-like protein PA012 39.0 10 0.00035 34.2 1.3 29 61-104 26-54 (138)
29 1dxg_A Desulforedoxin; non-hem 36.8 8.2 0.00028 26.9 0.3 15 90-104 2-16 (36)
30 2pjk_A 178AA long hypothetical 35.9 22 0.00074 32.4 3.0 116 313-429 35-177 (178)
31 3j20_Y 30S ribosomal protein S 34.4 12 0.00042 28.0 0.9 27 63-103 20-46 (50)
32 1vq8_Z 50S ribosomal protein L 32.0 9.7 0.00033 31.5 -0.0 26 64-103 29-54 (83)
33 1x0t_A Ribonuclease P protein 29.4 15 0.00052 31.9 0.8 18 92-109 92-109 (120)
34 3rfq_A Pterin-4-alpha-carbinol 28.8 23 0.0008 32.8 2.0 71 359-430 98-183 (185)
35 3iwt_A 178AA long hypothetical 28.4 25 0.00086 31.3 2.1 54 377-430 111-178 (178)
36 2fiy_A Protein FDHE homolog; F 28.3 23 0.00079 35.5 2.0 49 59-125 180-230 (309)
37 4e2x_A TCAB9; kijanose, tetron 27.6 65 0.0022 31.8 5.1 109 62-171 12-140 (416)
38 1pqv_S STP-alpha, transcriptio 26.5 29 0.00098 34.6 2.3 42 60-106 266-308 (309)
39 2k3r_A Ribonuclease P protein 25.4 18 0.00063 31.6 0.6 19 92-110 87-105 (123)
40 3pzy_A MOG; ssgcid, seattle st 24.4 41 0.0014 30.2 2.7 115 313-430 22-159 (164)
41 2k4x_A 30S ribosomal protein S 23.6 32 0.0011 26.1 1.6 30 61-104 17-46 (55)
42 4esj_A Type-2 restriction enzy 23.5 34 0.0012 33.7 2.1 30 63-103 35-65 (257)
43 2aus_D NOP10, ribosome biogene 23.3 43 0.0015 26.3 2.2 27 58-84 13-39 (60)
44 3o9x_A Uncharacterized HTH-typ 22.9 16 0.00055 30.7 -0.3 40 64-104 4-46 (133)
45 1nui_A DNA primase/helicase; z 22.5 30 0.001 32.6 1.5 34 59-106 11-45 (255)
46 2apo_B Ribosome biogenesis pro 21.5 56 0.0019 25.6 2.6 27 58-84 14-40 (60)
47 2d74_B Translation initiation 21.0 46 0.0016 30.2 2.3 46 43-104 90-135 (148)
48 1k81_A EIF-2-beta, probable tr 20.9 31 0.001 24.1 0.9 29 64-104 2-31 (36)
No 1
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=100.00 E-value=3.4e-82 Score=638.73 Aligned_cols=258 Identities=36% Similarity=0.742 Sum_probs=242.7
Q ss_pred CCCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHhhcc-CeeecCCCCCCCCCCc---cc-c
Q 011315 1 MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQT-FRWVNAPPCDGCSNET---VG-Q 75 (488)
Q Consensus 1 ~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~wFK~~-F~wv~~P~C~~Cg~~t---~~-~ 75 (488)
+||||.+|++||++||||+|+++|++...+.++.++++. ++|.+|++||+|||++ |+|||+|||+.||+++ .. +
T Consensus 58 ~Yed~~~~~~al~~iP~d~l~~~a~~~~~~~~~~~~~~~-~~d~ll~~LL~WFk~~fF~wvn~p~C~~Cg~~~~~~~~~~ 136 (335)
T 1x3z_A 58 VYDNPSWHSIVLETLDLDLIYKNVDKEFAKDGHAEGENI-YTDYLVKELLRYFKQDFFKWCNKPDCNHCGQNTSENMTPL 136 (335)
T ss_dssp HTCCHHHHHHHHHHSCHHHHHHHHHHHHHHCCSSSSCTH-HHHHHHHHHHHHHHHTTCEECSSCCCSSSCSSCCSSEEEE
T ss_pred HhCCHHHHHHHHHhCCHHHHHHHHHHHHHhcCCCCCccc-hhHHHHHHHHHHHHhcCCEeeCCCCccccCCCcccccccc
Confidence 499999999999999999999999976666665556544 5677999999999998 8999999999999985 55 5
Q ss_pred CCCCCChhhhhcCCceEEEeecCCCCcccccCCCCCHHHHHHhCCccchhhHHHHHHHHHHcCCCeEEEEeCCCeEEEEE
Q 011315 76 GMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTEC 155 (488)
Q Consensus 76 g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCgE~A~lF~~l~RalG~~aR~V~~~~dHvW~EV 155 (488)
|+.+|+++|+.+||++||+|+|+.||+.+||||||+|.+||+||+|+|+|||+||+++|||+|++||+|+|+++|+|+||
T Consensus 137 g~~~p~~~E~~~ga~~vE~y~C~~C~~~~rFPRYn~~~~ll~tr~G~C~e~A~lF~~llRalGi~aR~V~~~~~H~W~EV 216 (335)
T 1x3z_A 137 GSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLILKSFGLDVRYVWNREDHVWCEY 216 (335)
T ss_dssp EEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEECHHHHHHHHHHHHHTTTCCEEEEEETTTEEEEEE
T ss_pred CCCCCChhhhccCCceEEEeecCCCCcccccCCcCCHHHHHHhCCcChHHHHHHHHHHHHHCCCCeEEEecCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhhcccccHHHHHHHHHHHHHHH
Q 011315 156 FSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTREC 235 (488)
Q Consensus 156 y~~~~~rWIhVDP~e~~iD~Pllye~gwgKklsYVIAFs~DGv~DVTrRYt~~~~~~~~RR~rv~E~wl~~~L~~l~~~~ 235 (488)
|++..++|||||||++++|+|++|+.||+|+|+|||||++||++|||+||+.+ + . .+|.+|+|+||..+|..||.++
T Consensus 217 ~~~~~~rWv~vDp~~~~id~P~~ye~gw~k~msYVIAFs~dgv~DVT~RY~~~-~-~-lrR~rv~e~wl~~~L~~l~~~~ 293 (335)
T 1x3z_A 217 FSNFLNRWVHVDSCEQSFDQPYIYSINWNKKMSYCIAFGKDGVVDVSKRYILQ-N-E-LPRDQIKEEDLKFLCQFITKRL 293 (335)
T ss_dssp EETTTTEEEEEETTTTEESCTHHHHTTSCCCBCCEEEEETTEEEECHHHHCSS-S-B-CCCCSSCHHHHHHHHHHHHHHH
T ss_pred EECCCCCEEEECCCCCccCCCceeecCCCCceEEEEEEcCCCCEECHHHhCcC-C-c-cccccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 4 4 3888999999999999999999
Q ss_pred HccCCHHHhhhhhhccHHHHHHHHhhc
Q 011315 236 RRSFASETLSTLEDRDKCEREAMERDL 262 (488)
Q Consensus 236 r~~ls~ee~~~Le~Rd~~E~~EL~~~~ 262 (488)
|.+++++++..|++||+.|..||....
T Consensus 294 r~~~s~~e~~~L~~Rd~~E~~EL~~~~ 320 (335)
T 1x3z_A 294 RYSLNDDEIYQLACRDEQEQIELIRGK 320 (335)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHhHHHHHHHhhccC
Confidence 999999999999999999999998543
No 2
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=100.00 E-value=2.6e-73 Score=567.40 Aligned_cols=261 Identities=44% Similarity=0.819 Sum_probs=245.2
Q ss_pred CCCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCC-CCchhHHHHHHHHHHHhhcc-CeeecCCCCCCCCCCccccCC-
Q 011315 1 MYEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKP-SKTEQDHAFLLQLLFWFKQT-FRWVNAPPCDGCSNETVGQGM- 77 (488)
Q Consensus 1 ~YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~-~~~~~~~~~l~~LL~wFK~~-F~wv~~P~C~~Cg~~t~~~g~- 77 (488)
+||||.+|++||++|||++|+++|.+.+...++.++ ...++++.+|++||+|||++ |+|||+|||+.||++|...|+
T Consensus 18 ~yed~~~~~~al~~ip~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ll~wFk~~fF~~~~~P~c~~C~~~~~~~g~~ 97 (295)
T 2f4m_A 18 LYENPVLQEKALTCIPVSELKRKAQEKLFRARKLDKGTNVSDEDFLLLELLHWFKEEFFRWVNNIVCSKCGGETRSRDEA 97 (295)
T ss_dssp GGGCHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSTTSCSCCSHHHHHHHHHHHHHHTTCEECSSCCCTTTCCCCEECSSC
T ss_pred hhCCHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHhcCCEEeCCCCCcccCCcccccCCC
Confidence 599999999999999999999999987754443322 22234678999999999997 899999999999999998888
Q ss_pred CCCChhhhhcCCceEEEeecCCCCcccccCCCCCHHHHHHhCCccchhhHHHHHHHHHHcCCCeEEEEeCCCeEEEEEEe
Q 011315 78 GTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDFTDHVWTECFS 157 (488)
Q Consensus 78 ~~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCgE~A~lF~~l~RalG~~aR~V~~~~dHvW~EVy~ 157 (488)
++|+++|+.+||++||.|+|..|+..+||||||+|.++|++|+|+|++||++|++|||++|+|||+|.++.+|+|+|||+
T Consensus 98 ~~~~~~e~~~~a~~vE~y~c~~c~~~~~~pr~~~~~~~l~~r~G~C~d~A~lf~al~Ra~GIpAR~V~Gy~~HaW~Evy~ 177 (295)
T 2f4m_A 98 LLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGRCGEWANCFTLCCRALGFEARYVWDYTDHVWTEVYS 177 (295)
T ss_dssp BCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHHHHHHHCEESHHHHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEE
T ss_pred CCCChhHhhcccchhheeeccccCceeecCCCCCHHHHHHcCCEeeHHHHHHHHHHHHHCCCCEEEEcCCCCEEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEeccCCCcCCCCeeeecCccCccceEEeecCCcceechhhhccChHHhhhhcccccHHHHHHHHHHHHHHHHc
Q 011315 158 QSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNYVIAISKDGVFDVTKRYTRKWHEVLSRRNIATEQTVSAVLAKMTRECRR 237 (488)
Q Consensus 158 ~~~~rWIhVDP~e~~iD~Pllye~gwgKklsYVIAFs~DGv~DVTrRYt~~~~~~~~RR~rv~E~wl~~~L~~l~~~~r~ 237 (488)
++..+||++|||+++++.|++|+.||+++|+|||||+.||++|||+||+.+|+.+.++|.+|+|+||.++|..||.++|+
T Consensus 178 ~g~~gWv~~Dpt~~~~~~p~~~e~gwgr~lsYViAf~~D~a~DVT~RY~~~~~~~~~rR~~v~e~wl~~~l~~l~~~~r~ 257 (295)
T 2f4m_A 178 PSQQRWLHCDACEDVCDKPLLYEIGWGKKLSYIIAFSKDEVVDVTWRYSCKHDEVMSRRTKVKEELLRETINGLNKQRQL 257 (295)
T ss_dssp TTTTEEEEEETTTTEESCGGGTTTTSCCCCCCEEEECSSCEEECGGGGCSCHHHHHHHCCSSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEeCCcCccCCCceEeeccCCCceEEEEECCccCccchhhcccchHHHHhhccCCCHHHHHHHHHHHHHHHHc
Confidence 98789999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred cCCHHHhhhhhhccHHHHHHHHhh
Q 011315 238 SFASETLSTLEDRDKCEREAMERD 261 (488)
Q Consensus 238 ~ls~ee~~~Le~Rd~~E~~EL~~~ 261 (488)
++|++++.+|++||+.|..||...
T Consensus 258 ~~s~~e~~~l~~Rd~~E~~el~~~ 281 (295)
T 2f4m_A 258 SLSESRRKELLQRIIVELVEFISP 281 (295)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHhHHHHHHHhcCc
Confidence 999999999999999999999743
No 3
>2qsf_A RAD4, DNA repair protein RAD4; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_A* 2qsh_A*
Probab=100.00 E-value=5.5e-35 Score=311.13 Aligned_cols=278 Identities=16% Similarity=0.130 Sum_probs=183.1
Q ss_pred CCCHHHHHHHhccCChHHHHHHHHHHHHHcCCCCCCCch-hH---HHHHHHHHHHhhccCeeecCCCCCCCCCCccccCC
Q 011315 2 YEDPIRQEAAKKTVPVERLEEKSLVSLAREGNFKPSKTE-QD---HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGM 77 (488)
Q Consensus 2 YEd~~lq~~Al~~IPl~~L~~~a~~~l~~~g~~~~~~~~-~~---~~~l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~ 77 (488)
+.|+.+|+.+++.||.. |..... ...+..... .+ ...|++|+.|||+.|+ ++.| ...||...
T Consensus 63 ~nD~~lq~~L~sllP~~-i~~~l~------p~~~~~~~~~~~~~~~~~Lk~L~~ww~~~F~-it~p-~~~~g~~~----- 128 (533)
T 2qsf_A 63 INSKRLSRKLSNLVPEK-VFELLH------PQKDEELPLRSTRKLLDGLKKCMELWQKHWK-ITKK-YDNEGLYM----- 128 (533)
T ss_dssp HTCHHHHHHHGGGSCHH-HHHHTS------CCCCSSCTHHHHHHHHHHHHHHHHHHHHHCC-EECC-CSSCTTSC-----
T ss_pred hCCHHHHHHHHHhCCHH-HHHhhC------cCCCccccccchHHHHHHHHHHHHHHHhhEE-EcCC-ccCCCccc-----
Confidence 57999999999999954 322111 111111111 11 1368999999999885 3444 23444321
Q ss_pred CCCChhhhhcCCceEEEeecCCCCcccccCCCCCHHHHHHhCCccchhhHHHHHHHHHHcCCCeEEEEeC----------
Q 011315 78 GTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILDF---------- 147 (488)
Q Consensus 78 ~~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCgE~A~lF~~l~RalG~~aR~V~~~---------- 147 (488)
+.-.|.... .++.| ..++..++++.++++|++|+|++||+||++||||+|++||+|++.
T Consensus 129 --~~w~e~~~~-------~~~~~--~f~~~~~~~f~~~~~~~~Gs~d~~AqlF~aLlRalG~~aRlV~SLqP~~f~~~k~ 197 (533)
T 2qsf_A 129 --RTWKEIEMS-------ANNKR--KFKTLKRSDFLRAVSKGHGDPDISVQGFVAMLRACNVNARLIMSCQPPDFTNMKI 197 (533)
T ss_dssp --CCHHHHHHT-------TTTCC--CEECCCHHHHHHHHHHTEECHHHHHHHHHHHHHHTTCCEEEEEEECCCCTTCCBS
T ss_pred --cCccccchh-------hcccc--ccccccHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCceEEEecccccccccccc
Confidence 221222111 11112 113345688999999999999999999999999999999999852
Q ss_pred ---------------CCeEEEEEEeCCCCCeEEeccCCC-cC---CCCeeeec-----CccCccceEEeecCC-cceech
Q 011315 148 ---------------TDHVWTECFSQSLGRWMHLDPCEG-IY---DRPLLYEK-----GWNKKLNYVIAISKD-GVFDVT 202 (488)
Q Consensus 148 ---------------~dHvW~EVy~~~~~rWIhVDP~e~-~i---D~Pllye~-----gwgKklsYVIAFs~D-Gv~DVT 202 (488)
.+|+|+|||++.+++|||||||++ ++ +.|.+||+ +|+++|+|||||+.| +++|||
T Consensus 198 ~~~~~k~~~~~~~~~~P~~W~EV~s~~~~rWi~VDp~~~~~id~~~~~~~~Ep~~~~~~~~~~m~YViAf~~d~~~kDVT 277 (533)
T 2qsf_A 198 DTSLNGNNAYKDMVKYPIFWCEVWDKFSKKWITVDPVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRKYGCRDVT 277 (533)
T ss_dssp CCCCC---CHHHHTTSCSEEEEEEETTTTEEEEEESSSSCEEECCSSCCTTSCCSTTTTSSCCCCEEEEECTTCCEEECH
T ss_pred ccCcccCCccccccCCCeEEEEEEEcCCCeEEEEeccccccccccccccccccccccccccCceeEEEEEcCCCceEecc
Confidence 479999999999999999999985 44 57788885 499999999999987 599999
Q ss_pred hhhccChHHhhhhcccc-----cHHHHHHHHHHHHHHHHccCCHHHhhhhhhccHHHHHHHHhhccCCCCCCCCCCCCcc
Q 011315 203 KRYTRKWHEVLSRRNIA-----TEQTVSAVLAKMTRECRRSFASETLSTLEDRDKCEREAMERDLYSTDDAPVSLPGRQS 277 (488)
Q Consensus 203 rRYt~~~~~~~~RR~rv-----~E~wl~~~L~~l~~~~r~~ls~ee~~~Le~Rd~~E~~EL~~~~~~~~~~~~~l~GRqS 277 (488)
+||+.+|... .+|.|+ .++||..+|+.+++.. ...+|..|+.||......+. -+.++.+ --
T Consensus 278 ~RY~~~~~~k-~rr~Ri~~~~~~~~W~~~~L~~~~~~~-----------~~~~d~~Ed~el~~~~~~e~-~P~s~~~-fK 343 (533)
T 2qsf_A 278 RRYAQWMNSK-VRKRRITKDDFGEKWFRKVITALHHRK-----------RTKIDDYEDQYFFQRDESEG-IPDSVQD-LK 343 (533)
T ss_dssp HHHCTTCCCC-CGGGSGGGSHHHHHHHHHHHHHHCCSC-----------CCHHHHHHHHHHHHHHHHSC-CCSSTGG-GT
T ss_pred hhhhhchhhh-hheeeecCCcchHHHHHHHHHHHhcCC-----------ccccchhHHHHHHHHHhcCC-CCccHHH-Hc
Confidence 9999999654 466666 4899999999988521 13456667777754332111 1111100 00
Q ss_pred ccHHHHHhhcCCCCCCCCCcCCCCCCceeecc----cceeeEeeccch
Q 011315 278 GDKEWRISRSEIGSDDNCSLSCSSCPVRVCID----EHVTTIYNAFSS 321 (488)
Q Consensus 278 Gs~eWr~aRGE~G~~~~~s~~~s~cp~~~c~d----~hv~~iY~a~~~ 321 (488)
.++.+-. |--...+.++.|..-|++.|.. ..+..||.....
T Consensus 344 ~HP~yvL---er~L~k~E~i~P~a~~~g~~~~~~k~~~~E~VY~R~~V 388 (533)
T 2qsf_A 344 NHPYYVL---EQDIKQTQIVKPGCKECGYLKVHGKVGKVLKVYAKRDI 388 (533)
T ss_dssp TCSSEEE---GGGSCTTEEECTTCCCSEEEECCSTTCCEEEEEEGGGE
T ss_pred CCcHhhh---hhhhccceeeCCCCceeeEEecCcCCCcccceeehhhh
Confidence 0111111 2122345567777788998864 334589988763
No 4
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=99.46 E-value=2.4e-13 Score=135.26 Aligned_cols=121 Identities=12% Similarity=0.247 Sum_probs=88.5
Q ss_pred cCChHHHHHHHHHHHHHcCCCCCCCchhHHHHHHHHHHHhhccCeeecCCCCCCCCCCccccCCCCCChhhhhcCCceEE
Q 011315 14 TVPVERLEEKSLVSLAREGNFKPSKTEQDHAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVE 93 (488)
Q Consensus 14 ~IPl~~L~~~a~~~l~~~g~~~~~~~~~~~~~l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~Pt~eE~~~ga~rVE 93 (488)
.+|.++|.+-|..... + . . .+...+++|.+|..+.|+|.....= .+
T Consensus 122 ~~~~d~i~~~A~~~~~--~-~---~--~~~~~~~ai~~~v~~~~~Y~~~~~~---------~~----------------- 167 (293)
T 3isr_A 122 YCQSDKLQKLAYKEFG--K-I---E--NVYSKVLAITDWIYNNVEYISGSTN---------SQ----------------- 167 (293)
T ss_dssp TBCGGGSHHHHHHHHT--T-C---C--SHHHHHHHHHHHHHHHSEECTTSCC---------TT-----------------
T ss_pred CCCcHHHHHHHHHHhc--c-C---C--CHHHHHHHHHHHHHhhcEEeccCCC---------CC-----------------
Confidence 3455666666654221 1 1 1 1235799999999998998543210 00
Q ss_pred EeecCCCCcccccCCCCCHHHHHHhCCccchhhHHHHHHHHHHcCCCeEEEEe-------CCCeEEEEEEeCCCCCeEEe
Q 011315 94 LFRCKVCSKITRFPRYNDPLKLVETKRGRCGEWANCFTLYCRAFGYESRLILD-------FTDHVWTECFSQSLGRWMHL 166 (488)
Q Consensus 94 ~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCgE~A~lF~~l~RalG~~aR~V~~-------~~dHvW~EVy~~~~~rWIhV 166 (488)
.++..+|++|+|.|.+||++|++|||++|+|||+|.. ...|+|+|||.++ +|+.+
T Consensus 168 ----------------~~a~~~l~~~~G~C~d~A~l~val~Ra~GIPAR~VsGy~~~~~~~~~HAW~Evyl~g--gWv~~ 229 (293)
T 3isr_A 168 ----------------TSAFDTITERAGVCRDFAHLGIALCRALSIPARYFTGYAFKLNPPDFHACFEAYIGG--NWIIF 229 (293)
T ss_dssp ----------------CCHHHHHHHCEECHHHHHHHHHHHHHHTTCCEEEEEEEETTCSSCCEEEEEEEEETT--EEEEE
T ss_pred ----------------CCHHHhhcCCcEehHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCeEEEEEEEECC--cEEEE
Confidence 1357899999999999999999999999999999975 3579999999986 79999
Q ss_pred ccCCCcCCCCeeeecCccCcc
Q 011315 167 DPCEGIYDRPLLYEKGWNKKL 187 (488)
Q Consensus 167 DP~e~~iD~Pllye~gwgKkl 187 (488)
||+.+..+. .++..++|+.-
T Consensus 230 DpT~~~~~~-~~I~vA~GRD~ 249 (293)
T 3isr_A 230 DATRLVPLN-GLVKIATGRDA 249 (293)
T ss_dssp CTTCCSCGG-GEEEEEEESSG
T ss_pred ECCCCCCCC-CeEEEEECCCH
Confidence 999876443 45566677643
No 5
>2g9g_A Pngase, peptide N-glycanase; beta-sandwich, hydrolase; 2.00A {Mus musculus} SCOP: b.18.1.29
Probab=99.43 E-value=1.2e-16 Score=154.01 Aligned_cols=132 Identities=20% Similarity=0.233 Sum_probs=91.7
Q ss_pred CCCCCCCCCCccccHHHHHhhcCCCCCC-CCCcCCCCCCceeecccceeeEeeccc---hhhhccccCC-CchhhHHHHH
Q 011315 266 DDAPVSLPGRQSGDKEWRISRSEIGSDD-NCSLSCSSCPVRVCIDEHVTTIYNAFS---SVLSHFVENN-VPKSGAIELL 340 (488)
Q Consensus 266 ~~~~~~l~GRqSGs~eWr~aRGE~G~~~-~~s~~~s~cp~~~c~d~hv~~iY~a~~---~~ls~~~~~~-~~~~~a~~~~ 340 (488)
++++.++.||+|||++||.||||+|... ..++.|++. ++.+.+|+..||... .+.++..+.- .|.+++..+.
T Consensus 16 ~~~~~e~~GRtSGSl~WR~aRGE~g~~~~~~v~~p~e~---e~~~~~f~f~Y~~~~D~Ysr~~~n~~~i~gW~s~~~~~~ 92 (221)
T 2g9g_A 16 PRGSHELGGRVSGSLAWRVARGETGLERKEILFIPSEN---EKISKQFHLRYDIVRDRYIRVSDNNTNISGWENGVWKME 92 (221)
T ss_dssp --------CEECSSEEEC---------CCCCEECCCHH---HHHHTEEEEEEETTTTEEEEGGGTTEEEESGGGGCSSEE
T ss_pred CCCccccCCcccccHHHHHHhhccccCcCceeeccchh---hhhCCEEEEEEeccCcEEEEecCCCccccchhhcccccc
Confidence 3567899999999999999999998742 348999999 999999999999988 5555443333 6999999999
Q ss_pred HHHHHHHhhccCCCcccccccccCCCCchhHHHHhh-hccHHHHHHhhccc--cccCCCCCeEEEecCC
Q 011315 341 KILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQL-LPSIGHLLRVLSLK--SELNTDGRVDIVLAGD 406 (488)
Q Consensus 341 ~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~~~~~~-lps~~~ll~~lslk--~~~~~~g~~~~~~~~~ 406 (488)
.||||++.||||+ |++|++.-+.... -|+| |++.+-.+.-|.++ .....+|+|.+++-++
T Consensus 93 nIfRkvE~DWkmv-YLaR~Egt~~g~I-----sWkFdl~~~gl~V~ki~I~~~sq~f~~G~v~~~i~~~ 155 (221)
T 2g9g_A 93 SIFRKVEKDWNMV-YLARKEGSSFAYI-----SWKFECGSAGLKVDTVSIRTSSQSFESGSVRWKLRSE 155 (221)
T ss_dssp SEEEEEETTTTEE-EEEECTTCSEEEE-----EEEEECTTTTEEEEEEEEEEEEEECTTCEEEEEEECS
T ss_pred ceEEEEeCCCceE-EEEEeCCCCEEEE-----EEEEecCCCCcEEEEEEEEEeeEEecCCEEEEEEeCC
Confidence 9999999999999 9999886654443 3778 88766666666666 3445799998877764
No 6
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*
Probab=98.84 E-value=2.6e-09 Score=117.04 Aligned_cols=54 Identities=26% Similarity=0.547 Sum_probs=46.9
Q ss_pred CCccchhhHHHHHHHHHHcCCCeEEEEeC-------------------------------CCeEEEEEEeC------CCC
Q 011315 119 KRGRCGEWANCFTLYCRAFGYESRLILDF-------------------------------TDHVWTECFSQ------SLG 161 (488)
Q Consensus 119 R~GrCgE~A~lF~~l~RalG~~aR~V~~~-------------------------------~dHvW~EVy~~------~~~ 161 (488)
|.|.|.+||.+|+++||++|+|||+|.++ ..|+|+|||.+ +..
T Consensus 273 k~G~C~dfA~~~~~llRalGIPAR~VsGy~~~~~~~~~l~~d~~~~~~g~~~~~~~d~~~~~HAW~Ev~~~rpDLp~g~~ 352 (687)
T 2q3z_A 273 KYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYE 352 (687)
T ss_dssp EEECHHHHHHHHHHHHHHHTCCEEEEEEEEEECC--CCHHHHHHHC---------CCCCBSEEEEEEEEECCTTSSTTCC
T ss_pred ceeehHHHHHHHHHHHHhCCCCcEEEeecccccccccccccccccCCCCceeeecCCcccceeEEEEEEcccCCCCCCCC
Confidence 37999999999999999999999999532 26999999998 445
Q ss_pred CeEEeccCCCc
Q 011315 162 RWMHLDPCEGI 172 (488)
Q Consensus 162 rWIhVDP~e~~ 172 (488)
+|+.+||+.+.
T Consensus 353 GW~~~DpT~~~ 363 (687)
T 2q3z_A 353 GWQALDPTPQE 363 (687)
T ss_dssp EEEEECCSSCC
T ss_pred CEEEECCCCCc
Confidence 89999999754
No 7
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=98.67 E-value=1.4e-08 Score=111.87 Aligned_cols=58 Identities=24% Similarity=0.676 Sum_probs=49.5
Q ss_pred HHHHHhCC----ccchhhHHHHHHHHHHcCCCeEEEEeC--------------------------------CCeEEEEEE
Q 011315 113 LKLVETKR----GRCGEWANCFTLYCRAFGYESRLILDF--------------------------------TDHVWTECF 156 (488)
Q Consensus 113 ~~LL~tR~----GrCgE~A~lF~~l~RalG~~aR~V~~~--------------------------------~dHvW~EVy 156 (488)
.+.+.+|+ |.|.+||.+|+.+||++|+|||+|.++ ..|+|+|+|
T Consensus 300 ~~~~~~~~PV~~G~C~~fA~v~~~~lR~lGIPaRvVtgy~sa~d~~~~l~v~~~~~~~g~~~~~~~~dsIW~~H~W~E~w 379 (731)
T 1ex0_A 300 LEYRSSENPVRYGQCWVFAGVFNTFLRCLGIPARIVTNYFSAHDNDANLQMDIFLEEDGNVNSKLTKDSVWNYHCWNEAW 379 (731)
T ss_dssp HHHHHHTSCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEECCSCTTBCEEEEEECTTSCBCTTTCCCCCEEEEEEEEEE
T ss_pred HHHHhcCCccceeeehhHHHHHHHHHHhCCCCeeEEcccccCCCCCCcceeeEEecccCccccccccCccceeeEEEEEe
Confidence 35667898 999999999999999999999999642 249999999
Q ss_pred eC------CCCCeEEeccCC
Q 011315 157 SQ------SLGRWMHLDPCE 170 (488)
Q Consensus 157 ~~------~~~rWIhVDP~e 170 (488)
.. ..++|+.+||+.
T Consensus 380 ~~rpDLp~g~~GWq~~DpTp 399 (731)
T 1ex0_A 380 MTRPDLPVGFGGWQAVDSTP 399 (731)
T ss_dssp ECCTTSCTTCCEEEEEEEEE
T ss_pred ccccCCCCCCCCeEEEcCCC
Confidence 95 346799999995
No 8
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*
Probab=98.66 E-value=1.7e-08 Score=110.69 Aligned_cols=58 Identities=31% Similarity=0.562 Sum_probs=49.2
Q ss_pred HHHHhC-C----ccchhhHHHHHHHHHHcCCCeEEEEeC-------------------------------CCeEEEEEEe
Q 011315 114 KLVETK-R----GRCGEWANCFTLYCRAFGYESRLILDF-------------------------------TDHVWTECFS 157 (488)
Q Consensus 114 ~LL~tR-~----GrCgE~A~lF~~l~RalG~~aR~V~~~-------------------------------~dHvW~EVy~ 157 (488)
+.+.+| + |.|.+||.+|+++|||+|+|||+|.++ ..|+|+|+|.
T Consensus 258 ~~~~~~~~PV~~G~C~~fA~~~~~~lR~lGIPaR~Vtgy~s~~d~~~nL~~d~~~~~~g~~~~~~~dsIW~~HaW~E~w~ 337 (692)
T 1vjj_A 258 NWKKSGLSPVRYGQCWVFAGTLNTALRSLGIPSRVITNFNSAHDTDRNLSVDVYYDPMGNPLDKGSDSVWNFHVWNEGWF 337 (692)
T ss_dssp HHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEEEECSSSSSEEEEEECTTSCBCCCCSCEEEEEEEEEEEEE
T ss_pred HHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEcccccccCCCCCcccceeeccCCcccccccccccceeEEEEEec
Confidence 567776 3 999999999999999999999999643 2699999998
Q ss_pred C------CCCCeEEeccCCC
Q 011315 158 Q------SLGRWMHLDPCEG 171 (488)
Q Consensus 158 ~------~~~rWIhVDP~e~ 171 (488)
. ..++|+.+||+.+
T Consensus 338 ~rpDLp~~~~gW~~~DpT~~ 357 (692)
T 1vjj_A 338 VRSDLGPSYGGWQVLDATPQ 357 (692)
T ss_dssp CCTTTCGGGCEEEEECCSCS
T ss_pred cccCCCCCCCCEEEECCCCC
Confidence 5 2357999999963
No 9
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4
Probab=98.65 E-value=2.3e-08 Score=109.63 Aligned_cols=58 Identities=28% Similarity=0.521 Sum_probs=48.9
Q ss_pred HHHHhC-C----ccchhhHHHHHHHHHHcCCCeEEEEeC---------------------------------CCeEEEEE
Q 011315 114 KLVETK-R----GRCGEWANCFTLYCRAFGYESRLILDF---------------------------------TDHVWTEC 155 (488)
Q Consensus 114 ~LL~tR-~----GrCgE~A~lF~~l~RalG~~aR~V~~~---------------------------------~dHvW~EV 155 (488)
+.+.+| + |.|.+||.+|+++|||+|+|||+|.++ ..|+|+|+
T Consensus 258 ~~~~~~~~PV~~G~C~~fA~v~~t~lR~lGIPaR~Vtgy~sa~d~~~nL~id~~~~~~g~~~~~~~~~dsiw~~HaW~E~ 337 (695)
T 1g0d_A 258 QWSKAGVRPVKYGQCWVFAAVACTVLRCLGIPTRPITNFASAHDVDGNLSVDFLLNERLESLDSRQRSDSSWNFHCWVES 337 (695)
T ss_dssp HHHHTTSCCEEEECHHHHHHHHHHHHHHHTCCEEEEEEEEETTTTTTCSEEEEEECTTSCBSCTTCCBCSSEEEEEEEEE
T ss_pred HHHHcCCCcccceeeHHHHHHHHHHHHhCCCCeeEEccccccCCCCCccceeeeecccCceecccccCCcceeeEEEEEe
Confidence 456777 5 999999999999999999999999642 25999999
Q ss_pred EeC------CCCCeEEeccCCC
Q 011315 156 FSQ------SLGRWMHLDPCEG 171 (488)
Q Consensus 156 y~~------~~~rWIhVDP~e~ 171 (488)
|.. ..++|+.+||+..
T Consensus 338 w~~rpDLp~~~~gWq~~DpTpq 359 (695)
T 1g0d_A 338 WMSREDLPEGNDGWQVLDPTPQ 359 (695)
T ss_dssp EECCTTSCTTCCEEEEEECSCC
T ss_pred ecccCCCCCCCCCeEEEcCCCc
Confidence 985 3467999999963
No 10
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=98.31 E-value=6.6e-07 Score=94.47 Aligned_cols=89 Identities=12% Similarity=0.019 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhhccCeeecCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeecCCCCcccccCCCCCHHHHHHhCCcc
Q 011315 43 HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 122 (488)
Q Consensus 43 ~~~l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~Gr 122 (488)
...++++.+|-+..++|.... .|.+. . .-.++.++|++|.|.
T Consensus 245 ~ek~~~iy~~V~~~i~y~~~~-----------~~~~g----------~-----------------~~~~a~~vl~~~~G~ 286 (506)
T 3kd4_A 245 QEKVNIIRDHILNNLSTCPIP-----------MAMTG----------Y-----------------TVRDIDTVLRSAYGT 286 (506)
T ss_dssp HHHHHHHHHHHHHHCEECCCC-----------GGGGT----------T-----------------CCCCHHHHHHHTEEC
T ss_pred HHHHHHHHHHHHhccEeccee-----------cccCC----------C-----------------CCCCHHHHHHhCCcc
Confidence 457999999999889996321 11100 0 013568999999999
Q ss_pred chhhHHHHHHHHHHcCCCeEEEEe-------------CCCeEEEEEEeCCCCCeEEeccCCC
Q 011315 123 CGEWANCFTLYCRAFGYESRLILD-------------FTDHVWTECFSQSLGRWMHLDPCEG 171 (488)
Q Consensus 123 CgE~A~lF~~l~RalG~~aR~V~~-------------~~dHvW~EVy~~~~~rWIhVDP~e~ 171 (488)
|.+.|+||++||||+|+|||+|+- .-+|+|++|+.. ++|.-+||+..
T Consensus 287 C~d~a~Ll~AllRa~GIpA~~v~~~t~~~~~~~~~lp~~nh~i~~v~~~--g~~y~lDat~~ 346 (506)
T 3kd4_A 287 PLEIAQLLNVMLNAAGIPSEVLAVYPGHLDTDACGLAAIQTLAVKATVD--GKDQYLSASPL 346 (506)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEETTSCGGGCCSTTCCEEEEEEEET--TEEEEESSSCH
T ss_pred hHHHHHHHHHHHHHCCCCcEEEEEEcCCCCCccCCCCCCCEEEEEEEEC--CEEEEEecCCc
Confidence 999999999999999999999962 128999999986 57999999843
No 11
>2i74_A Pngase; beta-sandwich, hydrolase; HET: MAN; 1.75A {Mus musculus} SCOP: b.18.1.29 PDB: 2g9f_A
Probab=97.22 E-value=1.2e-06 Score=82.84 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=78.3
Q ss_pred CcCCCCCCceeecccceeeEeeccc---hhhhccccCC-CchhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhH
Q 011315 296 SLSCSSCPVRVCIDEHVTTIYNAFS---SVLSHFVENN-VPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQK 371 (488)
Q Consensus 296 s~~~s~cp~~~c~d~hv~~iY~a~~---~~ls~~~~~~-~~~~~a~~~~~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~ 371 (488)
++.|++. ++.+.+++..|+... .+.++..+.- .|.+++..+..||||++.||||+ |.+|++..+....+
T Consensus 7 v~~p~e~---e~~~~~~~f~Y~~~~D~Y~r~~~n~~~i~gW~s~~~~~~nIfRkvE~Dwkmv-YLaR~Egt~~g~Is--- 79 (189)
T 2i74_A 7 LFIPSEN---EKISKQFHLRYDIVRDRYIRVSDNNTNISGWENGVWKMESIFRKVEKDWNMV-YLARKEGSSFAYIS--- 79 (189)
T ss_dssp CBCCCHH---HHHHTEEEEEEETTTTEEEETTTTTEEEESGGGGCSSEESEEEEEETTTTEE-EEEECTTCSEEEEE---
T ss_pred EEecchh---hhhCCEEEEEEEccCcEEEEecCCCccccchhhccccccceEEEEeCCCceE-EEEEcCCCCEEEEE---
Confidence 7899999 999999999999988 5555443333 69999999999999999999999 99998866544433
Q ss_pred HHHhh-hccHHHHHHhhccc--cccCCCCCeEEEecC
Q 011315 372 IVHQL-LPSIGHLLRVLSLK--SELNTDGRVDIVLAG 405 (488)
Q Consensus 372 ~~~~~-lps~~~ll~~lslk--~~~~~~g~~~~~~~~ 405 (488)
|+| |++.+-.+.-|.++ .+...+|+|.+.+..
T Consensus 80 --WkFdl~~~gl~v~~i~i~~~sq~f~~G~v~~~~~~ 114 (189)
T 2i74_A 80 --WKFECGSAGLKVDTVSIRTSSQSFESGSVRWKLRS 114 (189)
T ss_dssp --EEEECGGGTEEEEEEEEECBEEECTTCEEEEEEEC
T ss_pred --EEEecCCCCcEEEEEEEEEeEEEecCCEEEEEEec
Confidence 777 88765556655553 455689999665554
No 12
>4fgq_A Periplasmic protein; DUF920, protease, calcium binding, hydrolase; 1.65A {Legionella pneumophila subsp} PDB: 4fgo_A 4fgp_A
Probab=94.26 E-value=0.069 Score=50.75 Aligned_cols=111 Identities=16% Similarity=0.273 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhhccCeeecCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeecCCCCcccccCCCCCHHHHHHhCCcc
Q 011315 43 HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 122 (488)
Q Consensus 43 ~~~l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~Gr 122 (488)
...|..+=++|. .++|+....= -|. . | .+..|.+.|..+.|.
T Consensus 44 ~~~L~~VN~~vN-~i~~~~D~~~---------~G~------------~--D--------------yWatP~E~l~~g~GD 85 (193)
T 4fgq_A 44 KIQLEKVNSFFN-QFNYETDPIT---------GAS------------D--D--------------YWKSPVEFIVDGGGD 85 (193)
T ss_dssp HHHHHHHHHHHH-TSEECCCTTT---------SSC------------C--S--------------SCCCHHHHHHHTEEC
T ss_pred HHHHHHHHHHHH-hcccccchhh---------cCC------------C--C--------------cCCCcHhHhCCCCcC
Confidence 346778888888 8888776542 221 0 1 245688999999999
Q ss_pred chhhHHHHHHHHHHcCCCe---EEEE--e---CCCeEEEEEEeCCCCCeEEeccCCCcCCCCeeeecCccCccce--EEe
Q 011315 123 CGEWANCFTLYCRAFGYES---RLIL--D---FTDHVWTECFSQSLGRWMHLDPCEGIYDRPLLYEKGWNKKLNY--VIA 192 (488)
Q Consensus 123 CgE~A~lF~~l~RalG~~a---R~V~--~---~~dHvW~EVy~~~~~rWIhVDP~e~~iD~Pllye~gwgKklsY--VIA 192 (488)
|.+||.+=...++++|+++ |+++ + ...|++.-||....+.|+-+|-....| . .|.+.-.| +.+
T Consensus 86 CEDyaI~K~~~L~~~G~p~~~Lri~vVr~~~~~~~HaVL~v~~~~~~~~lVLDNl~~~I-----~--p~s~r~dl~p~~S 158 (193)
T 4fgq_A 86 CEDFAIIKYFTLVAVGVPSDQLRITYAASLTLNQAHMVLSFYPTPESEPLILDSLESKI-----L--KASARPDLKPVYS 158 (193)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEEEEETTTTEEEEEEEECSSTTSCCEEECSSCSSC-----E--EGGGCTTEEEEEE
T ss_pred cHHHHHHHHHHHHHcCCCHHHeEEEEEEecCCCCCCEEEEEEECCCCCceEeeCCchhc-----c--CchhcCCcceEEe
Confidence 9999999999999999995 6653 3 357999999986556798998764432 1 24443333 566
Q ss_pred ecCCcc
Q 011315 193 ISKDGV 198 (488)
Q Consensus 193 Fs~DGv 198 (488)
|+..|+
T Consensus 159 fn~~g~ 164 (193)
T 4fgq_A 159 FNAEGL 164 (193)
T ss_dssp ECSSCE
T ss_pred eCCCCe
Confidence 766663
No 13
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=61.56 E-value=26 Score=34.23 Aligned_cols=66 Identities=24% Similarity=0.241 Sum_probs=47.5
Q ss_pred HHH-HhCCccchhhHHHHHHHHHHcCCCeEEEE----e--------CCCeEEEEEEeCCCCCeEEeccCCCc--CCCCee
Q 011315 114 KLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D--------FTDHVWTECFSQSLGRWMHLDPCEGI--YDRPLL 178 (488)
Q Consensus 114 ~LL-~tR~GrCgE~A~lF~~l~RalG~~aR~V~----~--------~~dHvW~EVy~~~~~rWIhVDP~e~~--iD~Pll 178 (488)
|++ +.|-|.|-|--.+|..+++++||+++.+. . ..+|.=.=|-.++ ++| -||.--|. .-.|+.
T Consensus 63 KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~Pl~ 140 (278)
T 2bsz_A 63 KIVLGGRGGYCFEHNLLFMHALKALGFEVGGLAARVLWGQSEDAITARSHMLLRVELDG-RTY-IADVGFGGLTLTAPLL 140 (278)
T ss_dssp HHTTSCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECSSCCSSSSCCCCEEEEEEEETT-EEE-EECSCCSSSCCCSCEE
T ss_pred HHHhCCCCeehHHHHHHHHHHHHHCCCeEEEEEEEEeeCCCCCCCCCCccEEEEEEECC-ceE-EEeCCCCccCcCceEE
Confidence 555 46778999999999999999999988873 1 2347666676664 457 67877654 356776
Q ss_pred eec
Q 011315 179 YEK 181 (488)
Q Consensus 179 ye~ 181 (488)
...
T Consensus 141 L~~ 143 (278)
T 2bsz_A 141 LEP 143 (278)
T ss_dssp CCB
T ss_pred ccC
Confidence 643
No 14
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=61.19 E-value=15 Score=36.78 Aligned_cols=56 Identities=18% Similarity=0.304 Sum_probs=39.3
Q ss_pred HHH-HhCCccchhhHHHHHHHHHHcCCCeEEEE----eC--------CCeEEEEEEeCCCCCeEEeccCCC
Q 011315 114 KLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----DF--------TDHVWTECFSQSLGRWMHLDPCEG 171 (488)
Q Consensus 114 ~LL-~tR~GrCgE~A~lF~~l~RalG~~aR~V~----~~--------~dHvW~EVy~~~~~rWIhVDP~e~ 171 (488)
||+ +.|-|.|-|-..+|..+++++||+++.+. +. ..|.=.=|-.++ ++| -||.--+
T Consensus 89 KiV~~~RGGyC~ElN~lf~~~L~~lGf~v~~~~arV~~~~~~~~~~~~~H~~l~V~~~g-~~y-lvDVGFG 157 (309)
T 3lnb_A 89 KLLIQKRGGLCYELNSLLYYFLMDCGFQVYKVAGTVYDLYDNKWKPDDGHVIIILHHNK-KDY-VIDAGFA 157 (309)
T ss_dssp HHTTTCCCBCHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECSTTCEEEEEEEETT-EEE-EECSCST
T ss_pred HHHHcCCCcchHHHHHHHHHHHHHcCCeEEEEeEEEecCCCCCCCCCCccEEEEEEECC-eEE-EEecCCC
Confidence 444 45778999999999999999999988874 21 246555555543 345 5666654
No 15
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=59.94 E-value=6 Score=39.20 Aligned_cols=67 Identities=25% Similarity=0.359 Sum_probs=46.4
Q ss_pred HHHH-HhCCccchhhHHHHHHHHHHcCCCeEEEE----e-C--------CCeEEEEEEeCCCCCeEEeccCCCc--CCCC
Q 011315 113 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D-F--------TDHVWTECFSQSLGRWMHLDPCEGI--YDRP 176 (488)
Q Consensus 113 ~~LL-~tR~GrCgE~A~lF~~l~RalG~~aR~V~----~-~--------~dHvW~EVy~~~~~rWIhVDP~e~~--iD~P 176 (488)
.|++ +.|-|.|-|--.+|..+++++||+++.+. . . .+|.=.=|-.++ ++| -||.--|. .-.|
T Consensus 82 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~l~arV~~~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~P 159 (299)
T 1w4t_A 82 AKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAE-GEF-LVDVGFGSANPPRA 159 (299)
T ss_dssp HHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETT-EEE-EECSCSGGGCCSSC
T ss_pred HHHHhcCCCcchHhHHHHHHHHHHHcCCeEEEEEEEEEeCCCCcCCCCCCccEEEEEEECC-ceE-EEeCCCCCcCcCee
Confidence 4666 56778999999999999999999998863 1 1 125545565554 457 57776553 3567
Q ss_pred eeeec
Q 011315 177 LLYEK 181 (488)
Q Consensus 177 llye~ 181 (488)
+....
T Consensus 160 l~L~~ 164 (299)
T 1w4t_A 160 LPLPG 164 (299)
T ss_dssp EESSC
T ss_pred EEccC
Confidence 66643
No 16
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=59.60 E-value=6.2 Score=38.75 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=43.6
Q ss_pred HHH-HhCCccchhhHHHHHHHHHHcCCCeEEEE----eC--------CCeEEEEEEeCCCCCeEEeccCCCcCC---CCe
Q 011315 114 KLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----DF--------TDHVWTECFSQSLGRWMHLDPCEGIYD---RPL 177 (488)
Q Consensus 114 ~LL-~tR~GrCgE~A~lF~~l~RalG~~aR~V~----~~--------~dHvW~EVy~~~~~rWIhVDP~e~~iD---~Pl 177 (488)
||+ +.|-|.|-|--.+|..+++++||+++.+. +. .+|.=.=|-.++ ++| -||.--|..- .|+
T Consensus 63 KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~~Pl 140 (295)
T 2ija_A 63 QVVRRNRGGWCLQVNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDG-RNY-IVDAGSGRSYQMWQPL 140 (295)
T ss_dssp HHHTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEECSSCCEEEEEEEETT-EEE-EECSCCCGGGCCSSCE
T ss_pred HHhcCCCcEEhHHHHHHHHHHHHHcCCcEEEEEEEEeeCCCCCCCCCCCcEEEEEEECC-ceE-EEeCCCCCccCCCceE
Confidence 555 46778999999999999999999988863 22 335545555544 346 5676655322 465
Q ss_pred eee
Q 011315 178 LYE 180 (488)
Q Consensus 178 lye 180 (488)
...
T Consensus 141 ~L~ 143 (295)
T 2ija_A 141 ELI 143 (295)
T ss_dssp ECC
T ss_pred Ecc
Confidence 554
No 17
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=59.16 E-value=7.9 Score=38.17 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=38.4
Q ss_pred HHHH-hCCccchhhHHHHHHHHHHcCCCeEEEEe----------CCCeEEEEE-EeCCCCCeEEeccCCC
Q 011315 114 KLVE-TKRGRCGEWANCFTLYCRAFGYESRLILD----------FTDHVWTEC-FSQSLGRWMHLDPCEG 171 (488)
Q Consensus 114 ~LL~-tR~GrCgE~A~lF~~l~RalG~~aR~V~~----------~~dHvW~EV-y~~~~~rWIhVDP~e~ 171 (488)
||+. .|-|.|-|-..+|..+++++||+++.+.. ...|.=.=| -.++.++| -||.--|
T Consensus 72 KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~H~~l~V~~l~dg~~y-lvDVGFG 140 (293)
T 3d9w_A 72 KLVHSRRGGYCYENAGLFAAALERLGFGVTGHTGRVTMGAGGLRPATHALLRVTTADDDRVW-MCDVGFG 140 (293)
T ss_dssp HHTSSSCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCSCCCEEEEEEEEECSSCSCEE-EECCSSS
T ss_pred HHHHcCCCcChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCccEEEEEEEcCCCCeE-EEecCCC
Confidence 4543 67789999999999999999999888742 123554444 44412345 4666544
No 18
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=58.70 E-value=7.2 Score=38.22 Aligned_cols=67 Identities=24% Similarity=0.302 Sum_probs=48.0
Q ss_pred HHHH-HhCCccchhhHHHHHHHHHHcCCCeEEEEe-----------CCCeEEEEEEeCCCCCeEEeccCCCc--CCCCee
Q 011315 113 LKLV-ETKRGRCGEWANCFTLYCRAFGYESRLILD-----------FTDHVWTECFSQSLGRWMHLDPCEGI--YDRPLL 178 (488)
Q Consensus 113 ~~LL-~tR~GrCgE~A~lF~~l~RalG~~aR~V~~-----------~~dHvW~EVy~~~~~rWIhVDP~e~~--iD~Pll 178 (488)
.|++ +.|-|.|-|--.+|..+++++||+++.+.. ..+|.=.=|-.++ ++| -||.--|. .-.|+.
T Consensus 61 ~KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~H~~l~V~idg-~~y-lvDVGFG~~~~~~Pl~ 138 (284)
T 1e2t_A 61 EKLLYARRGGYCFELNGLFERALRDIGFNVRSLLGRVILSHPASLPPRTHRLLLVDVED-EQW-IADVGFGGQTLTAPLR 138 (284)
T ss_dssp HHHTTTCCCBCHHHHHHHHHHHHHHTTCCEEEEEEEECTTCCSSCCCSCEEEEEEEETT-EEE-EECSCSCTTCCSSCEE
T ss_pred HHHhcCCCcEEhHHHHHHHHHHHHHCCCeEEEEEEEEecCCCCCCCCCccEEEEEEECC-ceE-EEecCCCccCcCceEE
Confidence 3555 457789999999999999999999998741 2347666666654 457 57876554 356776
Q ss_pred eec
Q 011315 179 YEK 181 (488)
Q Consensus 179 ye~ 181 (488)
...
T Consensus 139 L~~ 141 (284)
T 1e2t_A 139 LQA 141 (284)
T ss_dssp SCB
T ss_pred ccC
Confidence 643
No 19
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=57.17 E-value=6.6 Score=38.36 Aligned_cols=65 Identities=18% Similarity=0.166 Sum_probs=45.0
Q ss_pred HHH-HhCCccchhhHHHHHHHHHHcCCCeEEEE-----eC--------CCeEEEEEEeCCCCC--eEEeccCCCc--CCC
Q 011315 114 KLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL-----DF--------TDHVWTECFSQSLGR--WMHLDPCEGI--YDR 175 (488)
Q Consensus 114 ~LL-~tR~GrCgE~A~lF~~l~RalG~~aR~V~-----~~--------~dHvW~EVy~~~~~r--WIhVDP~e~~--iD~ 175 (488)
|++ +.|-|.|-|--.+|..+++++||+++.+. .. .+|.=.=|-.++ ++ | -||.--|. .-.
T Consensus 63 KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg-~~~~y-lvDVGFG~~~~~~ 140 (278)
T 1w5r_A 63 KLVDRRRGGYQYEHNGLLGYVLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAVPG-ADGRY-LVDVGFGGQTLTS 140 (278)
T ss_dssp HHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECTTCCTTCCCCCEEEEEEEEECSS-CSCCE-EECSCSCTTCCSS
T ss_pred HHhcCCCceehHHHHHHHHHHHHHcCCeEEEEEEEEeeCCCCCCCCCCCccEEEEEEECC-eEEEE-EEecCCCccCcCc
Confidence 555 56788999999999999999999998863 11 125545555554 45 7 57776554 346
Q ss_pred Ceeee
Q 011315 176 PLLYE 180 (488)
Q Consensus 176 Pllye 180 (488)
|+...
T Consensus 141 Pl~L~ 145 (278)
T 1w5r_A 141 PIRLE 145 (278)
T ss_dssp CEESC
T ss_pred eEEcc
Confidence 76664
No 20
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=56.45 E-value=25 Score=34.28 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=46.2
Q ss_pred HHH-HhCCccchhhHHHHHHHHHHcCCCeEEEE----e---------CCCeEEEEEEeCCCCC--eEEeccCCCc--CCC
Q 011315 114 KLV-ETKRGRCGEWANCFTLYCRAFGYESRLIL----D---------FTDHVWTECFSQSLGR--WMHLDPCEGI--YDR 175 (488)
Q Consensus 114 ~LL-~tR~GrCgE~A~lF~~l~RalG~~aR~V~----~---------~~dHvW~EVy~~~~~r--WIhVDP~e~~--iD~ 175 (488)
|++ +.|-|.|-|--.+|..+++++||+++.+. . ..+|.=.=|-.++ ++ | -||.--|. .-.
T Consensus 60 KiV~~~RGGyC~ElN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg-~~~~y-lvDVGFG~~~~~~ 137 (280)
T 2vfb_A 60 KLVDRRRGGYCYEHNGLIGYVLAELGYRVRRLAGRVVWLAPPDAPTPAQTHTVLAVTFPG-CQGPY-LVDVGFGGMTPTA 137 (280)
T ss_dssp HHTTTCCCBCHHHHHHHHHHHHHHHTCEEEEEEEEECTTCCTTSCCCCSCEEEEEEECTT-CSSCE-EECSCSGGGCCSS
T ss_pred HHhcCCCceEhHHHHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCCCcEEEEEEECC-eEEEE-EEecCCCccCcCc
Confidence 555 56788999999999999999999988863 1 1346656666654 45 7 57776554 346
Q ss_pred Ceeee
Q 011315 176 PLLYE 180 (488)
Q Consensus 176 Pllye 180 (488)
|+...
T Consensus 138 Pl~L~ 142 (280)
T 2vfb_A 138 PLRLE 142 (280)
T ss_dssp CEESC
T ss_pred eEEcc
Confidence 76664
No 21
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=51.85 E-value=8.8 Score=28.73 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=25.3
Q ss_pred cCCCCCCCCCCcc-ccCCCCCChhhhhcCCceEEEeecCCCCccccc
Q 011315 61 NAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 106 (488)
Q Consensus 61 ~~P~C~~Cg~~t~-~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RF 106 (488)
..-+|+.||+... ..-...=++|| ...=-|.|..||+.-||
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE-----~mT~Fy~C~~Cg~~w~~ 49 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQTRSADE-----PMTTFVVCNECGNRWKF 49 (50)
T ss_dssp CCSCCSSSCSSCEEEEEECSSSSSS-----CCEEEEEESSSCCEEEC
T ss_pred CccCCCCCCCCEEEEEEecCcCCCC-----CceEEEEcCCCCCeEEe
Confidence 4467999998643 22111113333 34457999999987666
No 22
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=50.83 E-value=7.7 Score=35.93 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=46.0
Q ss_pred HHHHHHHhhccCeeecCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeecCCCCcccccCCCCCHHHHHHhCCccchh
Q 011315 46 LLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGE 125 (488)
Q Consensus 46 l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCgE 125 (488)
+++-+...|.+-.|+- |-|+.|..+....+. ..|+|.+|+.. .=|
T Consensus 27 v~atI~~Ik~d~~~~Y-~ACp~CnKKV~~~~~---------------g~~~CekC~~~-~~~------------------ 71 (172)
T 3u50_C 27 VYGNLVSIQMKNKLYY-YRCTCQGKSVLKYHG---------------DSFFCESCQQF-INP------------------ 71 (172)
T ss_dssp EEEEEECCCCSSCCEE-EECTTSCCCEEEETT---------------TEEEETTTTEE-CCC------------------
T ss_pred EEEEEEEEcCCCcEEe-hhchhhCCEeeeCCC---------------CeEECCCCCCC-CCc------------------
Confidence 5555555665533333 669999887553321 26999999986 222
Q ss_pred hHHHHHHHHHHcCCCeEEEE-----eCCCeEEEEEEeCCCCCeEEe
Q 011315 126 WANCFTLYCRAFGYESRLIL-----DFTDHVWTECFSQSLGRWMHL 166 (488)
Q Consensus 126 ~A~lF~~l~RalG~~aR~V~-----~~~dHvW~EVy~~~~~rWIhV 166 (488)
..||++ |.+++.|+-+|.+....-+..
T Consensus 72 --------------~~RYil~~~i~D~TG~~wvt~F~e~ae~ilG~ 103 (172)
T 3u50_C 72 --------------QVHLMLRAFVQDSTGTIPVMIFDQQSSQLINQ 103 (172)
T ss_dssp --------------EEEECEEEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred --------------eEEEEEEEEEEeCCCCEEEEEEhHHHHHHhCC
Confidence 345553 789999999997654444444
No 23
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=47.08 E-value=10 Score=36.71 Aligned_cols=46 Identities=17% Similarity=0.392 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhccCeeecCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeecCCCCcccccCCCC
Q 011315 44 AFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYN 110 (488)
Q Consensus 44 ~~l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn 110 (488)
....+|++|.++. + -|+.||+++..... . ....|..|+. ..|||..
T Consensus 95 ~~a~~l~~w~~~~-~-----fC~~CG~~~~~~~~------------~--~~~~C~~C~~-~~yp~~~ 140 (269)
T 1vk6_A 95 GRGVQLAEFYRSH-K-----YCGYCGHEMYPSKT------------E--WAMLCSHCRE-RYYPQIA 140 (269)
T ss_dssp HHHHHHHHHHHTT-S-----BCTTTCCBEEECSS------------S--SCEEESSSSC-EECCCCE
T ss_pred HHHHHHHhhhhcC-C-----ccccCCCcCccCCC------------c--eeeeCCCCCC-EecCCCC
Confidence 3567889988653 2 29999998765311 1 1247999986 4578864
No 24
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=46.31 E-value=16 Score=33.35 Aligned_cols=73 Identities=22% Similarity=0.580 Sum_probs=46.8
Q ss_pred HHHHHHHhhcc-CeeecCCCCCC--CCCCccccCCCCCChhhhhcCCceEEEeecCCCCcccccCCCCCHHHHHHhCCcc
Q 011315 46 LLQLLFWFKQT-FRWVNAPPCDG--CSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGR 122 (488)
Q Consensus 46 l~~LL~wFK~~-F~wv~~P~C~~--Cg~~t~~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~Gr 122 (488)
+.+-+..+|.+ |-| |.|+. |+.+....+. + .|+|..|+...-=|
T Consensus 29 v~atI~~i~~d~~~Y---~aC~~~~CnKKv~~~~~------------g---~~~CekC~~~~~~~--------------- 75 (181)
T 1l1o_C 29 SVATVVYLRKENCMY---QACPTQDCNKKVIDQQN------------G---LYRCEKCDTEFPNF--------------- 75 (181)
T ss_dssp EEEEEEEECCSTTEE---EBCCSTTCCCBCEEETT------------T---EEEETTTTEEESSC---------------
T ss_pred EEEEEEEEeCCCEEE---CCCCchhcCCccccCCC------------C---eEECCCCCCcCCCc---------------
Confidence 44555566665 544 67988 9887553321 1 59999998653222
Q ss_pred chhhHHHHHHHHHHcCCCeEEEE-----eCCCeEEEEEEeCCCCCeEEecc
Q 011315 123 CGEWANCFTLYCRAFGYESRLIL-----DFTDHVWTECFSQSLGRWMHLDP 168 (488)
Q Consensus 123 CgE~A~lF~~l~RalG~~aR~V~-----~~~dHvW~EVy~~~~~rWIhVDP 168 (488)
..||++ |.+.+.|+-+|.+....=+....
T Consensus 76 -----------------~~ry~l~~~i~D~Tg~~~~t~F~~~ae~ilG~sA 109 (181)
T 1l1o_C 76 -----------------KYRMILSVNIADFQENQWVTCFQESAEAILGQNA 109 (181)
T ss_dssp -----------------CEEEEEEEEEECSSCEEEEEEEHHHHHHHHSSCH
T ss_pred -----------------eEEEEEEEEEEeCCCCEEEEEEhHHHHHHhCCCH
Confidence 236764 68999999999876544444433
No 25
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=44.99 E-value=9.6 Score=28.64 Aligned_cols=37 Identities=24% Similarity=0.473 Sum_probs=20.9
Q ss_pred CCCCCCCCCcccc-CCCCCChhhhhcCCceEEEeecCCCCccc
Q 011315 63 PPCDGCSNETVGQ-GMGTPLPSEIQYGAARVELFRCKVCSKIT 104 (488)
Q Consensus 63 P~C~~Cg~~t~~~-g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~ 104 (488)
-+|+.||...... -...-.++| ...=-|.|..||..-
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~rsade-----p~T~fy~C~~Cg~~w 53 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTRAGDE-----PSTIFYKCTKCGHTW 53 (57)
T ss_dssp CCCTTTCCSEEEEEEECCSSSSC-----SSEEEEEESSSCCEE
T ss_pred eECCCCCCCEEEEEEeecccCCC-----CCcEEEEcCCCCCEe
Confidence 4699999964321 111112222 223469999999853
No 26
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=42.88 E-value=13 Score=34.46 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=25.9
Q ss_pred ecCCCCCCCCCCcc-ccCCCCCChhhhhcCCceEEEeecCCCCccccc
Q 011315 60 VNAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 106 (488)
Q Consensus 60 v~~P~C~~Cg~~t~-~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RF 106 (488)
++.-+|+.||+... +.-...=++|| ...=-|.|..||+.-||
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE-----~mt~f~~C~~C~~~w~f 177 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAA-----PLTTFCTCEACGNRWKF 177 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTS-----CCCCCEEETTTCCEECC
T ss_pred cCCcCCCCCCCCceEEEEeecccCCC-----CCcEEEEcCCCCCeecc
Confidence 34457999998643 22222223333 23346999999998887
No 27
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=42.49 E-value=14 Score=37.14 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=11.3
Q ss_pred ceEEEeecCCCCccc
Q 011315 90 ARVELFRCKVCSKIT 104 (488)
Q Consensus 90 ~rVE~y~C~~C~~~~ 104 (488)
..+.++.|..|++..
T Consensus 249 ~~~r~e~C~~C~~Yl 263 (309)
T 2fiy_A 249 AVLRAETCPSCQGYL 263 (309)
T ss_dssp CSEEEEEETTTTEEE
T ss_pred cceEEEEcccccchH
Confidence 556677899999765
No 28
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=39.02 E-value=10 Score=34.22 Aligned_cols=29 Identities=31% Similarity=0.732 Sum_probs=21.3
Q ss_pred cCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeecCCCCccc
Q 011315 61 NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 104 (488)
Q Consensus 61 ~~P~C~~Cg~~t~~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~ 104 (488)
+-|+|+.|+++-.... | ++|-|+.|+..-
T Consensus 26 ~lP~CP~C~seytYeD-----------g----~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYED-----------G----ALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEEC-----------S----SSEEETTTTEEE
T ss_pred cCCCCCCCCCcceEec-----------C----CeEECCcccccc
Confidence 4699999999866542 1 258899998743
No 29
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=36.76 E-value=8.2 Score=26.87 Aligned_cols=15 Identities=13% Similarity=0.891 Sum_probs=12.0
Q ss_pred ceEEEeecCCCCccc
Q 011315 90 ARVELFRCKVCSKIT 104 (488)
Q Consensus 90 ~rVE~y~C~~C~~~~ 104 (488)
.+.+.|+|..||..+
T Consensus 2 k~~~fY~C~~CGniv 16 (36)
T 1dxg_A 2 NEGDVYKCELCGQVV 16 (36)
T ss_dssp CTTCEEECTTTCCEE
T ss_pred CcccEEEcCCCCcEE
Confidence 346789999999865
No 30
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=35.85 E-value=22 Score=32.44 Aligned_cols=116 Identities=13% Similarity=0.245 Sum_probs=69.0
Q ss_pred eeEeeccchhhhccccCCC--------chhhHHHHHHHHHHHHhhc-cCCCcccccccccCCCCchhHHHHhh----hcc
Q 011315 313 TTIYNAFSSVLSHFVENNV--------PKSGAIELLKILKGILGDL-KKSPYKTRRVSLNSVPNNGQKIVHQL----LPS 379 (488)
Q Consensus 313 ~~iY~a~~~~ls~~~~~~~--------~~~~a~~~~~~~r~~~~dl-k~~~f~~R~~~~~~~~~~~~~~~~~~----lps 379 (488)
++||++.++.|...+.... =.-....+.+.++....+- -+.=.-|=-++....+-+ .+.+.++ ||-
T Consensus 35 G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t-~eal~~~~~~~l~G 113 (178)
T 2pjk_A 35 EPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDIT-VETIRKLFDREIEG 113 (178)
T ss_dssp CCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCH-HHHHGGGCSEECHH
T ss_pred CeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcch-HHHHHHHhcccCcc
Confidence 4788887766555444331 1112233444455443320 111133333444444433 2344555 456
Q ss_pred HHHHHHhhcccc---cc---------C-CCCCeEEEecCCCccccchhh-HhHHHHHHHHHhcc
Q 011315 380 IGHLLRVLSLKS---EL---------N-TDGRVDIVLAGDPVKTSLSLP-VVFKALDDMIHDLN 429 (488)
Q Consensus 380 ~~~ll~~lslk~---~~---------~-~~g~~~~~~~~~p~~tsl~l~-~~~~~~~~~~~~~~ 429 (488)
++.++..+++|. -- + -+|...++|=|||+.+-+++- ++++.|..++..++
T Consensus 114 ~~~~~~~v~~~p~~~G~pa~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~~~~~~~ 177 (178)
T 2pjk_A 114 FSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEVGHLVYLVR 177 (178)
T ss_dssp HHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred hHHHhheeeccCCCCCCcchhheeEEEEECCEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788999999987 21 1 257799999999999999987 78888888877664
No 31
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=34.40 E-value=12 Score=27.96 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=17.8
Q ss_pred CCCCCCCCCccccCCCCCChhhhhcCCceEEEeecCCCCcc
Q 011315 63 PPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 103 (488)
Q Consensus 63 P~C~~Cg~~t~~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~ 103 (488)
.-||.||+....... -+.+.|..||-.
T Consensus 20 k~CP~CG~~~fm~~~--------------~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMADH--------------GDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEEEC--------------SSEEECSSSCCE
T ss_pred ccCCCCCCceEEecC--------------CCeEECCCCCCE
Confidence 348999986543311 146899999864
No 32
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=31.97 E-value=9.7 Score=31.47 Aligned_cols=26 Identities=19% Similarity=0.708 Sum_probs=17.9
Q ss_pred CCCCCCCCccccCCCCCChhhhhcCCceEEEeecCCCCcc
Q 011315 64 PCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 103 (488)
Q Consensus 64 ~C~~Cg~~t~~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~ 103 (488)
+|+.||.+...-- .+-+.+|+.|+..
T Consensus 29 ~Cp~CG~~~v~r~--------------atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQ--------------GTGIWQCSYCDYK 54 (83)
T ss_dssp ECSSSCCEEEEEE--------------ETTEEEETTTCCE
T ss_pred cCCCCCCcceecc--------------CCCeEECCCCCCE
Confidence 6999998644221 1127899999975
No 33
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=29.38 E-value=15 Score=31.86 Aligned_cols=18 Identities=28% Similarity=0.648 Sum_probs=15.4
Q ss_pred EEEeecCCCCcccccCCC
Q 011315 92 VELFRCKVCSKITRFPRY 109 (488)
Q Consensus 92 VE~y~C~~C~~~~RFPRY 109 (488)
.=+|.|..||...|||--
T Consensus 92 ~vv~tCl~Cg~~kR~p~~ 109 (120)
T 1x0t_A 92 HVVITCLECGYIMRYPYL 109 (120)
T ss_dssp EEEEEETTTCCEEEEECC
T ss_pred EEEEECCCCCCEEEEccC
Confidence 457899999999999943
No 34
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=28.83 E-value=23 Score=32.75 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=49.7
Q ss_pred cccccCCCCchhHHHHhh----hccHHHHHHhhcccc-c---------cC-CCCCeEEEecCCCccccchhhHhHHHHHH
Q 011315 359 RVSLNSVPNNGQKIVHQL----LPSIGHLLRVLSLKS-E---------LN-TDGRVDIVLAGDPVKTSLSLPVVFKALDD 423 (488)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~----lps~~~ll~~lslk~-~---------~~-~~g~~~~~~~~~p~~tsl~l~~~~~~~~~ 423 (488)
=++....+-+ .+.+.++ +|-++.++..+++|. . .+ .+|...++|-|||+..-.++-++++.|..
T Consensus 98 Gts~g~~D~t-~eal~~l~~~~l~G~~~~f~~v~~kpG~p~a~lsR~~~G~~~~~~V~~LPGnP~aa~~~~~~l~P~L~~ 176 (185)
T 3rfq_A 98 GTGVTPRDVT-PESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGMATLNPLAAH 176 (185)
T ss_dssp CCSSSTTCCH-HHHHHTTCSEECHHHHHHHHHHHHHTTCHHHHTCCCCEEEETTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccH-HHHHHHHhcccCccHHHHHHHHhcCCCCCceeeeehhhcccCCeEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 3344444444 2344554 577888999999976 1 12 25678999999999999888888888888
Q ss_pred HHHhccc
Q 011315 424 MIHDLNN 430 (488)
Q Consensus 424 ~~~~~~~ 430 (488)
++..++.
T Consensus 177 ~~~~l~g 183 (185)
T 3rfq_A 177 IIGQLSS 183 (185)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 8876653
No 35
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=28.42 E-value=25 Score=31.35 Aligned_cols=54 Identities=13% Similarity=0.354 Sum_probs=36.1
Q ss_pred hccHHHHHHhhcccccc------------C-CCCCeEEEecCCCccccchhh-HhHHHHHHHHHhccc
Q 011315 377 LPSIGHLLRVLSLKSEL------------N-TDGRVDIVLAGDPVKTSLSLP-VVFKALDDMIHDLNN 430 (488)
Q Consensus 377 lps~~~ll~~lslk~~~------------~-~~g~~~~~~~~~p~~tsl~l~-~~~~~~~~~~~~~~~ 430 (488)
++-++.++..+++|..- + -+|...++|-|+|+..-..+- .+++.|..++..+++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~~~i~~LPG~P~~~~~~~~~~v~P~L~h~~~~irs 178 (178)
T 3iwt_A 111 IEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEVGHLVYLVRS 178 (178)
T ss_dssp CHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHhccccccccccccccceeeECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44456666666665421 1 267789999999998877775 567777777766543
No 36
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.25 E-value=23 Score=35.49 Aligned_cols=49 Identities=18% Similarity=0.423 Sum_probs=32.3
Q ss_pred eecCCCCCCCCCCccc--cCCCCCChhhhhcCCceEEEeecCCCCcccccCCCCCHHHHHHhCCccchh
Q 011315 59 WVNAPPCDGCSNETVG--QGMGTPLPSEIQYGAARVELFRCKVCSKITRFPRYNDPLKLVETKRGRCGE 125 (488)
Q Consensus 59 wv~~P~C~~Cg~~t~~--~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~GrCgE 125 (488)
| +..-|+.||+.-.. +..+ ++.++--...|..|++.-+|+|. +.-.||+
T Consensus 180 ~-~~~~CPvCGs~P~~s~l~~~--------g~~~G~R~l~Cs~C~t~W~~~R~---------~C~~Cg~ 230 (309)
T 2fiy_A 180 E-SRTLCPACGSPPMAGMIRQG--------GKETGLRYLSCSLCACEWHYVRI---------KCSHCEE 230 (309)
T ss_dssp T-TCSSCTTTCCCEEEEEEEC------------CCEEEEEETTTCCEEECCTT---------SCSSSCC
T ss_pred c-cCCCCCCCCCcCceeEEeec--------CCCCCcEEEEeCCCCCEEeecCc---------CCcCCCC
Confidence 6 56789999996432 2110 11244447899999999999995 4556665
No 37
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=27.64 E-value=65 Score=31.82 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=52.9
Q ss_pred CCCCCCCCCCcc---ccCCCC-----CChhhh-hcCCceEEEeecCCCCcccccCCCCCHHHHHHhCC----ccchhhH-
Q 011315 62 APPCDGCSNETV---GQGMGT-----PLPSEI-QYGAARVELFRCKVCSKITRFPRYNDPLKLVETKR----GRCGEWA- 127 (488)
Q Consensus 62 ~P~C~~Cg~~t~---~~g~~~-----Pt~eE~-~~ga~rVE~y~C~~C~~~~RFPRYn~p~~LL~tR~----GrCgE~A- 127 (488)
...|+.||+... ..|..+ ..+++. .......++++|..|+....-+.. ++..++...- +.-..|.
T Consensus 12 ~~~C~~Cg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~~~~-~~~~~y~~~y~~~~~~~~~~~~ 90 (416)
T 4e2x_A 12 PTACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTEEV-PRDLMFHEVYPYHSSGSSVMRE 90 (416)
T ss_dssp CEECTTTSCEEEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEESSCC-CHHHHSSTTCCCCGGGCHHHHH
T ss_pred CCcCCCCCCeeeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeecCcC-CHHHhccCCccCcCcCCHHHHH
Confidence 346999999821 112111 112222 233457899999999976544433 5666554221 1111222
Q ss_pred ---HHHHHHHHHcCCC-eEEEEeC--CCeEEEEEEeCCCCCeEEeccCCC
Q 011315 128 ---NCFTLYCRAFGYE-SRLILDF--TDHVWTECFSQSLGRWMHLDPCEG 171 (488)
Q Consensus 128 ---~lF~~l~RalG~~-aR~V~~~--~dHvW~EVy~~~~~rWIhVDP~e~ 171 (488)
...-.+++.+++. ..-|+|. .+=.+.........+.+.+|+...
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~ 140 (416)
T 4e2x_A 91 HFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSG 140 (416)
T ss_dssp HHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHH
Confidence 2333445556653 3345552 111122222222235778888754
No 38
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=26.50 E-value=29 Score=34.57 Aligned_cols=42 Identities=19% Similarity=0.421 Sum_probs=25.4
Q ss_pred ecCCCCCCCCCCcc-ccCCCCCChhhhhcCCceEEEeecCCCCccccc
Q 011315 60 VNAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 106 (488)
Q Consensus 60 v~~P~C~~Cg~~t~-~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RF 106 (488)
++.-.|+.||.... +.-...=++|| ...=-|.|..||+.-||
T Consensus 266 ~~~~~C~~C~~~~~~~~q~Q~rsaDe-----~~t~f~~C~~Cg~~w~f 308 (309)
T 1pqv_S 266 TDRFTCGKCKEKKVSYYQLQTRSADE-----PLTTFCTCEACGNRWKF 308 (309)
T ss_pred cccccCCCCCCCeeEEEEeecccCCC-----CCcEEEEeCCCCCceec
Confidence 34567999998633 22221112333 22346999999998777
No 39
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=25.39 E-value=18 Score=31.57 Aligned_cols=19 Identities=26% Similarity=0.684 Sum_probs=16.1
Q ss_pred EEEeecCCCCcccccCCCC
Q 011315 92 VELFRCKVCSKITRFPRYN 110 (488)
Q Consensus 92 VE~y~C~~C~~~~RFPRYn 110 (488)
.=+|.|..||...|||--.
T Consensus 87 ~vv~tCl~Cg~~kR~p~~~ 105 (123)
T 2k3r_A 87 HIVVKCLECGHIMRYPYIK 105 (123)
T ss_dssp EEEEEETTTTEEEEEECCC
T ss_pred EEEEECCCCCCEEEEecCc
Confidence 4678999999999999643
No 40
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=24.44 E-value=41 Score=30.18 Aligned_cols=115 Identities=12% Similarity=0.187 Sum_probs=67.2
Q ss_pred eeEeeccchhhhccccCC---------CchhhHHHHHHHHHHHHhhccCCCcccccccccCCCCchhHHHHhh----hcc
Q 011315 313 TTIYNAFSSVLSHFVENN---------VPKSGAIELLKILKGILGDLKKSPYKTRRVSLNSVPNNGQKIVHQL----LPS 379 (488)
Q Consensus 313 ~~iY~a~~~~ls~~~~~~---------~~~~~a~~~~~~~r~~~~dlk~~~f~~R~~~~~~~~~~~~~~~~~~----lps 379 (488)
.+||++.++.|...+.+. +.-. ..+.+.+++.+.+--+.=.-|==++....+-+ .+.+.++ +|-
T Consensus 22 G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd--~~i~~al~~a~~~~~DlVittGG~s~g~~D~t-~eal~~~~~~~lpG 98 (164)
T 3pzy_A 22 GEYEDRCGPIITEWLAQQGFSSAQPEVVADG--SPVGEALRKAIDDDVDVILTSGGTGIAPTDST-PDQTVAVVDYLIPG 98 (164)
T ss_dssp ----CCHHHHHHHHHHHTTCEECCCEEECSS--HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCH-HHHHHTTCSEECHH
T ss_pred CceeeHHHHHHHHHHHHCCCEEEEEEEeCCH--HHHHHHHHHHHhCCCCEEEECCCCCCCCCccH-HHHHHHHhcccCcc
Confidence 478888886665544332 1222 44555565554211121123333344444434 2344555 567
Q ss_pred HHHHHHhhcccccc---------C-CCCCeEEEecCCCccccchhhHhHHHHHHHHHhccc
Q 011315 380 IGHLLRVLSLKSEL---------N-TDGRVDIVLAGDPVKTSLSLPVVFKALDDMIHDLNN 430 (488)
Q Consensus 380 ~~~ll~~lslk~~~---------~-~~g~~~~~~~~~p~~tsl~l~~~~~~~~~~~~~~~~ 430 (488)
++.++...++|..= + .+++..++|=|||+..-.++-+++++|..++..++.
T Consensus 99 ~~~~~~~~~~~~~p~a~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~v~P~l~~~~~~~~g 159 (164)
T 3pzy_A 99 LAEAIRRSGLPKVPTSVLSRGVCGVAGQTLIVNLPGSPGGVRDGLGVLAGVLDHALDQLAG 159 (164)
T ss_dssp HHHHHHHTTTTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHhhccCCCCccccchhhhcccCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888888888521 1 246799999999999888888888888888877754
No 41
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=23.60 E-value=32 Score=26.14 Aligned_cols=30 Identities=13% Similarity=0.375 Sum_probs=20.2
Q ss_pred cCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeecCCCCccc
Q 011315 61 NAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 104 (488)
Q Consensus 61 ~~P~C~~Cg~~t~~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~ 104 (488)
+...||.||+...... .-+.|.|..|+-..
T Consensus 17 ~~~fCPkCG~~~~ma~--------------~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAE--------------HADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEE--------------CSSEEECTTTCCCE
T ss_pred ccccCcCCCCceeEec--------------cCCEEECCCCCCEE
Confidence 3567999998654321 12378999998753
No 42
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=23.51 E-value=34 Score=33.68 Aligned_cols=30 Identities=30% Similarity=0.551 Sum_probs=19.0
Q ss_pred CCCCCCCCC-ccccCCCCCChhhhhcCCceEEEeecCCCCcc
Q 011315 63 PPCDGCSNE-TVGQGMGTPLPSEIQYGAARVELFRCKVCSKI 103 (488)
Q Consensus 63 P~C~~Cg~~-t~~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~ 103 (488)
--|+.||+. -...+...| |--|.|..|+..
T Consensus 35 ~yCPnCG~~~l~~f~nN~P-----------VaDF~C~~C~Ee 65 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRP-----------VADFYCNHCSEE 65 (257)
T ss_dssp CCCTTTCCSSCEEC----C-----------CCEEECTTTCCE
T ss_pred CcCCCCCChhhhhccCCCc-----------ccccccCCcchh
Confidence 349999995 445555444 445999999874
No 43
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=23.35 E-value=43 Score=26.31 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=18.6
Q ss_pred eeecCCCCCCCCCCccccCCCCCChhh
Q 011315 58 RWVNAPPCDGCSNETVGQGMGTPLPSE 84 (488)
Q Consensus 58 ~wv~~P~C~~Cg~~t~~~g~~~Pt~eE 84 (488)
.|+.+..|+.||++|...-...=+|||
T Consensus 13 ~YTLk~~CP~CG~~t~~ahParfSP~D 39 (60)
T 2aus_D 13 RYTLKETCPVCGEKTKVAHPPRFSPED 39 (60)
T ss_dssp CEESSSBCTTTCSBCEESSCCCCCSCC
T ss_pred CEEccccCcCCCCccCCCCCCCCCCCC
Confidence 577888899999988765443335554
No 44
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=22.91 E-value=16 Score=30.71 Aligned_cols=40 Identities=15% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCCCCCCCccccCCCCCChhhhhcCC---ceEEEeecCCCCccc
Q 011315 64 PCDGCSNETVGQGMGTPLPSEIQYGA---ARVELFRCKVCSKIT 104 (488)
Q Consensus 64 ~C~~Cg~~t~~~g~~~Pt~eE~~~ga---~rVE~y~C~~C~~~~ 104 (488)
.|+.||+.+...+.. +..-+..+.. ..|..+.|..||...
T Consensus 4 ~Cp~Cg~~~~~~~~~-~~~~~~kg~~~~v~~v~~~~C~~CGE~~ 46 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIK-DIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (133)
T ss_dssp BCTTTSSSBEEEEEE-EEEEEETTEEEEEEEEEEEEESSSSCEE
T ss_pred CCCcCCCCceeeceE-EEEEEECCEEEEECCCceeECCCCCCEe
Confidence 599999874322211 0111111111 235689999999875
No 45
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=22.49 E-value=30 Score=32.61 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=21.0
Q ss_pred eecCCCCCCCCCCcc-ccCCCCCChhhhhcCCceEEEeecCCCCccccc
Q 011315 59 WVNAPPCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKITRF 106 (488)
Q Consensus 59 wv~~P~C~~Cg~~t~-~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~RF 106 (488)
|...-+||.||+... .+-. .| -+.|++||....+
T Consensus 11 ~~~~~~CP~Cg~~d~~~~~~---------dg-----~~~C~~Cg~~~~~ 45 (255)
T 1nui_A 11 FLYHIPCDNCGSSDGNSLFS---------DG-----HTFCYVCEKWTAG 45 (255)
T ss_dssp EEEEECCSSSCCSSCEEEET---------TS-----CEEETTTCCEEC-
T ss_pred eecCCcCCCCCCCCCceEeC---------CC-----CeecccCCCcCCC
Confidence 344568999998532 1110 12 2899999987644
No 46
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.48 E-value=56 Score=25.60 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=16.2
Q ss_pred eeecCCCCCCCCCCccccCCCCCChhh
Q 011315 58 RWVNAPPCDGCSNETVGQGMGTPLPSE 84 (488)
Q Consensus 58 ~wv~~P~C~~Cg~~t~~~g~~~Pt~eE 84 (488)
.|+.+-.|+.||++|...-...=+|||
T Consensus 14 vYTLk~~CP~CG~~T~~~hParfSp~D 40 (60)
T 2apo_B 14 LYTLKEICPKCGEKTVIPKPPKFSLED 40 (60)
T ss_dssp CEESSSBCSSSCSBCBCCCCCCCCTTC
T ss_pred CEeccccCcCCCCcCCCCCCCCCCCCc
Confidence 456667788888777655433334444
No 47
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=21.01 E-value=46 Score=30.18 Aligned_cols=46 Identities=17% Similarity=0.381 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhccCeeecCCCCCCCCCCccccCCCCCChhhhhcCCceEEEeecCCCCccc
Q 011315 43 HAFLLQLLFWFKQTFRWVNAPPCDGCSNETVGQGMGTPLPSEIQYGAARVELFRCKVCSKIT 104 (488)
Q Consensus 43 ~~~l~~LL~wFK~~F~wv~~P~C~~Cg~~t~~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~ 104 (488)
...+..+|+=|-..| | .|+.|+++.+.+-. -+++-.-+|..||+..
T Consensus 90 ~~~i~~~L~~yI~~y--V---lC~~C~sPdT~L~k-----------~~r~~~l~C~ACGa~~ 135 (148)
T 2d74_B 90 PYLIANKLKKYIKEY--V---ICPVCGSPDTKIIK-----------RDRFHFLKCEACGAET 135 (148)
T ss_dssp HHHHHHHHHHHHHHH--S---SCSSSCCTTCCCCB-----------SSSSBCCCCSSSCCCC
T ss_pred HHHHHHHHHHHHHHE--E---ECCCCCCcCcEEEE-----------eCCEEEEEecCCCCCc
Confidence 346778887665544 3 49999997443311 1466677999999864
No 48
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=20.91 E-value=31 Score=24.15 Aligned_cols=29 Identities=28% Similarity=0.641 Sum_probs=20.4
Q ss_pred CCCCCCCCcc-ccCCCCCChhhhhcCCceEEEeecCCCCccc
Q 011315 64 PCDGCSNETV-GQGMGTPLPSEIQYGAARVELFRCKVCSKIT 104 (488)
Q Consensus 64 ~C~~Cg~~t~-~~g~~~Pt~eE~~~ga~rVE~y~C~~C~~~~ 104 (488)
-|+.|+++.. ..- -++.-..+|..||+..
T Consensus 2 lC~~C~~peT~l~~------------~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIK------------EGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEE------------ETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEE------------eCCcEEEEhhcCCCcc
Confidence 4899999743 331 1466778999999865
Done!