BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011316
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/455 (79%), Positives = 392/455 (86%), Gaps = 3/455 (0%)
Query: 25 IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
+ +LESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R
Sbjct: 69 VDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR 128
Query: 85 DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVA
Sbjct: 129 EDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 188
Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
GDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPA
Sbjct: 189 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPA 248
Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
L RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALR
Sbjct: 249 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308
Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
TVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 368
Query: 325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
PLVNLL AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD
Sbjct: 369 NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDI 428
Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
RIVTVCLEGLENILK GE +K + G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKA
Sbjct: 429 RIVTVCLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 487
Query: 445 VKILETYWVXXXXXXXXXXXXATQAG--FGFAGNG 477
VKILE YW+ A G F F G
Sbjct: 488 VKILEAYWMDEEDDTMGATTVAAPQGATFDFGQGG 522
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/449 (80%), Positives = 388/449 (86%), Gaps = 3/449 (0%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
SLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R+DFPQL
Sbjct: 37 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGDSPKC
Sbjct: 97 QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 210
RDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL RLIH
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
TGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 390
PLVNLL AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD RIVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 391 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450
LEGLENILK GE +K + G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKAVKILE
Sbjct: 397 LEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 455
Query: 451 YWVXXXXXXXXXXXXATQAG--FGFAGNG 477
YW+ A G F F G
Sbjct: 456 YWMDEEDDTMGATTVAAPQGATFDFGQGG 484
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 247/420 (58%), Positives = 294/420 (70%), Gaps = 4/420 (0%)
Query: 35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R + LQFE
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 94 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
+AW LTNIASG S TR+VI GAVPIF+ LLSS +DV+EQAVWALGN+AGDS CRD
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
VL L PLL F++ +L+M RNA W LSN CRGK P P F + P L L L+ +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 332
DD+QTQ I+N AL L L + K+SIKKEACWTISNITAGN L
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
+++L AEF +KEAAWAI+NATSGGS EQIK+LV GCIKPLCDLL D +IV V L
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
GLENIL+ GE E T G+N + I++A GL+KIE LQSH+N EIY+KA ++E Y+
Sbjct: 381 GLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 439
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 247/420 (58%), Positives = 294/420 (70%), Gaps = 4/420 (0%)
Query: 35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
M+ ++S QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R + LQFE
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 94 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
+AW LTNIASG S TR+VI GAVPIF+ LLSS +DV+EQAVWALGN+AGDS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
VL L PLL F++ +L+M RNA W LSN CRGK P P F + P L L L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 332
DD+QTQ I+N AL L L + K+SIKKEACWTISNITAGN L
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
+++L AEF +KEAAWAI+NATSGGS EQIK+LV GCIKPLCDLL D +IV V L
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
GLENIL+ GE E T G+N + I++A GL+KIE LQSH+N EIY+KA ++E Y+
Sbjct: 384 GLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 244/433 (56%), Positives = 298/433 (68%), Gaps = 7/433 (1%)
Query: 23 FIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL 82
F QLQ E LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+
Sbjct: 81 FYSQLQQE-LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM 139
Query: 83 SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 142
+ LQ EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGN
Sbjct: 140 RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199
Query: 143 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPA 201
VAGDS RD VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + A
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 258
Query: 202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 261
LP L +LI+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V P
Sbjct: 259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 318
Query: 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXX 321
ALR VGNIVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 319 ALRAVGNIVTGNDLQTQVVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLL 379
PLV LL AE++ KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 437
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTE 439
D RI+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +
Sbjct: 438 EIADNRIIEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDK 496
Query: 440 IYEKAVKILETYW 452
IYEKA KI+ETY+
Sbjct: 497 IYEKAYKIIETYF 509
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/424 (56%), Positives = 293/424 (69%), Gaps = 6/424 (1%)
Query: 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
PLV LL AE++ KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI+
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 359 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 449 ETYW 452
ETY+
Sbjct: 418 ETYF 421
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 238/424 (56%), Positives = 293/424 (69%), Gaps = 6/424 (1%)
Query: 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 61 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
PLV LL AE++ KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI+
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
V L+ LENI+K GEA+K +N A I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 359 VTLDALENIIKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 449 ETYW 452
ETY+
Sbjct: 418 ETYF 421
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 438 bits (1127), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/426 (56%), Positives = 293/426 (68%), Gaps = 6/426 (1%)
Query: 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ +
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
LQ EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 208
RD VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 328
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 329 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 447 ILETYW 452
I+ETY+
Sbjct: 418 IIETYF 423
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 438 bits (1126), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/426 (56%), Positives = 293/426 (68%), Gaps = 6/426 (1%)
Query: 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
+ LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ +
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
LQ EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 208
RD VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
I+S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 328
IVTG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 329 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
+ V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 447 ILETYW 452
I+ETY+
Sbjct: 418 IIETYF 423
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/424 (56%), Positives = 292/424 (68%), Gaps = 6/424 (1%)
Query: 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI+
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 360 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 449 ETYW 452
ETY+
Sbjct: 419 ETYF 422
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 437 bits (1123), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/424 (56%), Positives = 292/424 (68%), Gaps = 6/424 (1%)
Query: 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
LP M + SDD QL AT +FR++LS E PPI+ VIQ+GVVPR +EF+ + LQ
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
EAAWALTNIASGTS T+VV+D AVP+F++LL + + +V+EQA+WALGNVAGDS R
Sbjct: 62 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
D VL A+ P+L FN + K S++R ATWTLSN CRG KPQP + ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
S D E L DACWA+SYLSDG + IQAVI+ + RLVELL H S V PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
TG+D+QTQ +IN LP L LL + K++IKKEACWTISNITAGN
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
PLV LL AE + KKEA WAISNA+SGG + I++LVSQGCIKPLCDLL D RI+
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
V L+ LENILK GEA+K +N A I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 360 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 449 ETYW 452
ETY+
Sbjct: 419 ETYF 422
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
++E Y+ T GF F +G P G FNF
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 373 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 426
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
++E Y+ T GF F +G P G FNF
Sbjct: 427 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 466
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
++E Y+ T GF F +G P G FNF
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 44 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 342
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 343 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 402
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 403 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 456
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
++E Y+ T GF F +G P G FNF
Sbjct: 457 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 496
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
++E Y+ T GF F +G P G FNF
Sbjct: 421 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 460
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 386 bits (991), Expect = e-107, Method: Compositional matrix adjust.
Identities = 211/462 (45%), Positives = 290/462 (62%), Gaps = 16/462 (3%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFN 486
++E Y+ T GF F +G P G FN
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFN 509
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/463 (45%), Positives = 289/463 (62%), Gaps = 16/463 (3%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 136
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AG
Sbjct: 137 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 256
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 257 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 375
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +K AAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 435
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 436 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 489
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
++E Y+ T GF F +G P G FNF
Sbjct: 490 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 529
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/463 (45%), Positives = 289/463 (62%), Gaps = 16/463 (3%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S + QL AT RKLLS E+ PPI+ +I++G++P+F+ FL R D +
Sbjct: 9 SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 69 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 151 RDLVLSNGALMPLLAQFNEHAKLSM----LRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ GA+ PLLA S+ LRN TWTLSN CR K P P + LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H +D EVL D CWA+SYL+DG N++I V++ GV P+LV+LL ++ PALR
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 307
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV++L A+F+ +KEA WA++N TSGG+ EQI +LV G I+PL +LL D +
Sbjct: 308 HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTK 367
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ+H+N +Y+ ++
Sbjct: 368 IILVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQNHENESVYKASL 421
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
++E Y+ T G+ F +G P G FNF
Sbjct: 422 SLIEKYFSVEEEEDQNVVPETTSEGYTFQVQDGAP---GTFNF 461
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 366 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 419
Query: 446 KILETYW 452
++E Y+
Sbjct: 420 NLIEKYF 426
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 7 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 67 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 366 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 419
Query: 446 KILETYW 452
++E Y+
Sbjct: 420 NLIEKYF 426
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 446 KILETYW 452
++E Y+
Sbjct: 421 NLIEKYF 427
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 8 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 68 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 446 KILETYW 452
++E Y+
Sbjct: 421 NLIEKYF 427
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 42 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 340
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 341 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 400
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 401 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 454
Query: 446 KILETYW 452
++E Y+
Sbjct: 455 NLIEKYF 461
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 362 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 415
Query: 446 KILETYW 452
++E Y+
Sbjct: 416 NLIEKYF 422
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 3 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 63 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 362 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 415
Query: 446 KILETYW 452
++E Y+
Sbjct: 416 NLIEKYF 422
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
S+ +V G+ S++ QL AT RKLLS E+ PPI+ +I++G++P+F+ FL + D +
Sbjct: 34 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP + EQAVWALGN+AGD
Sbjct: 94 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
RDLV+ +GA+ PLLA LRN TWTLSN CR K P P + LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL ++ PALR
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
+GNIVTG D QTQ +I+ AL LLT N K +I+KEA WT+SNITAG +
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 332
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
LV +L A+F+ +KEAAWAI+N TSGG+ EQI +LV G I+PL +LL+ D +
Sbjct: 333 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 392
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
I+ V L+ + NI +A E +G T +++ I++ GL+KIE LQ H+N +Y+ ++
Sbjct: 393 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 446
Query: 446 KILETYW 452
++E Y+
Sbjct: 447 NLIEKYF 453
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 133/232 (57%), Gaps = 12/232 (5%)
Query: 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
LP M + SDD QL AT +F ++LS + + I VI +G +P ++ LS + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-----ALPALE 206
V+ GAL P L Q +L+ A W LSN G EQ + ALPAL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALV 186
Query: 207 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 258
+L+ S ++++L +A WALS ++ G N++ QAV EAG +L +L H + +
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 16/249 (6%)
Query: 202 LPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
LP + + ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 320
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 321 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
LV LL + +I +EA WA+SN SGG NEQI+ ++ G + L LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440
P+ +I+ L L NI G +K QA+ +A LEK+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK------------QAVKEAGALEKLEQLQSHENEKI 238
Query: 441 YEKAVKILE 449
++A + LE
Sbjct: 239 QKEAQEALE 247
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 114/197 (57%), Gaps = 2/197 (1%)
Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 320
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 173
Query: 321 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
LV LL + +I +EA WA+SN SGG NEQ + + G ++ L L +
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 232
Query: 381 CPDPRIVTVCLEGLENI 397
+ +I E LE +
Sbjct: 233 HENEKIQKEAQEALEKL 249
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
+LPA+V + S + I +A + S + I VI +G +P ++ LS + L
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQIL 197
Query: 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 140
Q EA WAL+NIASG +E + V + GA+ +L S + ++++A AL
Sbjct: 198 Q-EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303
P++V+ L P L ALR + I +G + Q Q +I+ ALP L+ LL+ + + I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 304 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
EA W +SNI +G LV LL + +I +EA WA+SN SGG NEQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423
+ ++ G + L LL+ P+ +I+ L L NI G +K QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 424 EGLEKIENLQSHDNTEIYEKAVKILETY 451
LEK+E LQSH+N +I ++A + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
Query: 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIER--SPPINEVIQSGVVPRFIEFLSRDDFPQ 89
LP MV + S D Q + + RKL I + I VI +G +P ++ LS +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
LQ EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERL 208
V+ GAL P L Q +L+ A W LSN G Q + AL LE+L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Query: 209 IHSNDDEVLTDACWALSYL 227
++++ +A AL L
Sbjct: 189 QSHENEKIQKEAQEALEKL 207
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 320
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 321 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATS 356
L L + +I+KEA A+ S
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)
Query: 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
LP M + SDD QL AT +F ++LS + + I VI +G +P ++ LS + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERLIH 210
V+ GAL P L Q +L+ A W LSN G Q + AL LE+L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 211 SNDDEVLTDACWALSYL 227
++++ +A AL L
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 107/197 (54%), Gaps = 4/197 (2%)
Query: 202 LPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
LP + + ++S+D + A S LSDG N++IQAVI+AG P LV+LL P+ +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 320
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 321 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
LV LL + +I +EA WA+SN SGG NEQ + + G ++ L L +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 381 CPDPRIVTVCLEGLENI 397
+ +I E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 14/206 (6%)
Query: 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303
P++ + L + A R I++ + Q Q +I+ ALP L+ LL+ + + I +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 304 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
EA W +SNI +G LV LL + +I +EA WA+SN SGG NEQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423
+ ++ G + L LL+ P+ +I+ L L NI G +K QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 424 EGLEKIENLQSHDNTEIYEKAVKILE 449
LEK+E LQSH+N +I ++A + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 320
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 321 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATS 356
L L + +I+KEA A+ S
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 106/199 (53%), Gaps = 8/199 (4%)
Query: 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIER--SPPINEVIQSGVVPRFIEFLSRDDFPQ 89
LP MV + S D Q + + RKL I + I VI +G +P ++ LS +
Sbjct: 14 LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
LQ EA WAL+NIASG +E + VID GA+P V+LLSSP + + ++A+WAL N+A +
Sbjct: 71 LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERL 208
V+ GAL P L Q +L+ A W LSN G Q + A PALE+L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 209 IHSNDDEVLTDACWALSYL 227
S ++++ +A AL +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 14/206 (6%)
Query: 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303
P++V+ L P L ALR + I +G + Q Q +I+ ALP L+ LL+ + + I +
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 304 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
EA W +SNI +G LV LL + +I +EA WA+SN SGG NEQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423
+ ++ G + L LL+ P+ +I+ L L NI G +K QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 424 EGLEKIENLQSHDNTEIYEKAVKILE 449
+E LQS N +I ++A + LE
Sbjct: 180 GAEPALEQLQSSPNEKIQKEAQEALE 205
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
ALPAL +L+ S ++++L +A WALS ++ G N++IQAVI+AG P LV+LL P+ +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 320
AL + NI +G + Q Q +I+ ALP L+ LL+ + + I +EA W +SNI +G
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQK 173
Query: 321 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATS 356
L L + +I+KEA A+ S
Sbjct: 174 QAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKIQS 209
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 14/245 (5%)
Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
L +L+ S D E +A L+ ++ G I+A+++AG LV+LL V A R
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
+ NI +G D + I++ + L+ LLT + ++KEA ++NI +G
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
LV LL + + E++KEAA A++N S G +E IK +V G ++ L LL D
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
+ L NI G T + +AI DA G+E ++ L + ++E+ ++A
Sbjct: 185 EVQKEAARALANIAS--------GPTSAI----KAIVDAGGVEVLQKLLTSTDSEVQKEA 232
Query: 445 VKILE 449
+ LE
Sbjct: 233 QRALE 237
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 122/272 (44%), Gaps = 49/272 (18%)
Query: 49 DATTQ---FRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103
D+ TQ R L I P I ++ +G V ++ L+ D ++Q EAA AL NIAS
Sbjct: 15 DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIAS 73
Query: 104 GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 163
G E + ++D G V + V+LL+S +V+++A AL N+A + ++ G + L
Sbjct: 74 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVL 133
Query: 164 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWA 223
+ +L+ S D EV +A A
Sbjct: 134 V------------------------------------------KLLTSTDSEVQKEAARA 151
Query: 224 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 283
L+ ++ G ++ I+A+++AG LV+LL V A R + NI +G + I++
Sbjct: 152 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDA 211
Query: 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAG 315
+ L LLT + ++KEA + NI +G
Sbjct: 212 GGVEVLQKLLT-STDSEVQKEAQRALENIKSG 242
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 2/197 (1%)
Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
L +L+ S D EV +A AL+ ++ G ++ I+A+++AG LV+LL V A R
Sbjct: 49 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 108
Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
+ NI +G D + I++ + L+ LLT + ++KEA ++NI +G
Sbjct: 109 ALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIV 167
Query: 325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
LV LL + + E++KEAA A++N SG ++ IK +V G ++ L LL D
Sbjct: 168 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS-AIKAIVDAGGVEVLQKLLTSTDS 226
Query: 385 RIVTVCLEGLENILKAG 401
+ LENI G
Sbjct: 227 EVQKEAQRALENIKSGG 243
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 15/113 (13%)
Query: 138 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 197
+AL +A +P ++ + M +L+ N KL+ L NF + F+
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKY 178
Query: 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 250
P LP + L+H D+ V A AL +L+ NDK++ V V RL EL
Sbjct: 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKLRKV----VIKRLEEL 226
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 22/148 (14%)
Query: 89 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 148
Q Q A TN+ T+ V+ D +P+ + LL P DVR A +A+ D+
Sbjct: 132 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 191
Query: 149 KCRDLVLSNGALMPLLAQFNEHAKLSML-----RNATWTLSNFCRG-KPQPLFEQ----- 197
RD + L NE ++ + R LS C K +++
Sbjct: 192 DIRD------CFVEXLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNTVYDDIIEAA 245
Query: 198 ----TRPALPALERLIHSNDD-EVLTDA 220
+ LP L+ ++ DD E++T A
Sbjct: 246 GELGDKTLLPVLDTXLYKFDDNEIITSA 273
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 67 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 176
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 177 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 233
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 234 TDPSQRLVQNCLWTLRNLSDAATKQEGM 261
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 20/97 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 111
+ G +PR ++ L R Q QF + I G + + R+
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 112 VIDH-GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 488
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 94 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
A A +I G + R H A+P + L++ + V+E W +G +A + D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 154 VLS-NGALMPLLAQFNEHAKLSMLRNATWTLSN----FCRGKPQPLF 195
G + L +H K++ N +WT+ N P P++
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVAT--NCSWTIINLVEQLAEATPSPIY 493
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312
A+ G+I+ G D + HQALP +L+L+ + +K+ W I I
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRI 438
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 94 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
A A +I G + R H A+P + L++ + V+E W +G +A + D
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448
Query: 154 VLS-NGALMPLLAQFNEHAKLSMLRNATWTLSN----FCRGKPQPLF 195
G + L +H K++ N +WT+ N P P++
Sbjct: 449 QQHLPGVVQACLIGLQDHPKVAT--NCSWTIINLVEQLAEATPSPIY 493
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312
A+ G+I+ G D + HQALP +L+L+ + +K+ W I I
Sbjct: 389 AVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN-DQSLQVKETTAWCIGRI 438
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNE 169
++ H +P + +P R+ AV A G + G P + + LV+ MP L + +
Sbjct: 363 IVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMK 418
Query: 170 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYL 227
+ + A WT+ C P+ A P L+ LI S + V ++ CWA S L
Sbjct: 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSL 477
Query: 228 SDGTND 233
++ +
Sbjct: 478 AEAAYE 483
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 177
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 178 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 234
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 235 TDPSQRLVQNCLWTLRNLSDAATKQEGM 262
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 146
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 177
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 178 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 234
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 235 TDPSQRLVQNCLWTLRNLSDAATKQEGM 262
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 146
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 118 VPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSM 175
+P + +P R+ AV A G + G P + + LV+ MP L + + + +
Sbjct: 243 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVV 299
Query: 176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDG 230
A WT+ C P+ A P L+ LI S + V ++ CWA S L++
Sbjct: 300 RDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSLAEA 355
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLS 174
A+P + L+ P+ VR+ A W +G + P+ +++ L PLL E A+
Sbjct: 284 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLSAEPR 340
Query: 175 MLRNATWTLSNFCRG 189
+ N W S+
Sbjct: 341 VASNVCWAFSSLAEA 355
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 118 VPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSM 175
+P + +P R+ AV A G + G P + + LV+ MP L + + + +
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVV 424
Query: 176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTND 233
A WT+ C P+ A P L+ LI S + V ++ CWA S L++ +
Sbjct: 425 RDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYE 483
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLS 174
A+P + L+ P+ VR+ A W +G + P+ +++ L PLL E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLSAEPR 465
Query: 175 MLRNATWTLSNFCRG 189
+ N W S+
Sbjct: 466 VASNVCWAFSSLAEA 480
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 164
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 165 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 221
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 222 TDPSQRLVQNCLWTLRNLSDAATKQEGM 249
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 476
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 118 VPIFVRLLSSPTDDVREQAVWALGNV-AGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSM 175
+P + +P R+ AV A G + G P + + LV+ MP L + + + +
Sbjct: 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA---MPTLIELMKDPSVVV 424
Query: 176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDG 230
A WT+ C P+ A P L+ LI S + V ++ CWA S L++
Sbjct: 425 RDTAAWTVGRICELLPEAAINDVYLA-PLLQCLIEGLSAEPRVASNVCWAFSSLAEA 480
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLS 174
A+P + L+ P+ VR+ A W +G + P+ +++ L PLL E A+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLSAEPR 465
Query: 175 MLRNATWTLSNFCRG 189
+ N W S+
Sbjct: 466 VASNVCWAFSSLAEA 480
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 74 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 129
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 130 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 183
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 184 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 240
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 241 TDPSQRLVQNCLWTLRNLSDAATKQEGM 268
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 495
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 59 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 114
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 115 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 168
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 169 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 225
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 226 TDPSQRLVQNCLWTLRNLSDAATKQEGM 253
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 480
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 164
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 165 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 221
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 222 TDPSQRLVQNCLWTLRNLSDAATKQEGM 249
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 476
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 57 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 112
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 113 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 166
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 167 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 223
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 224 TDPSQRLVQNCLWTLRNLSDAATKQEGM 251
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 478
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 73 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 128
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 129 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 182
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 183 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 239
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 240 TDPSQRLVQNCLWTLRNLSDAATKQEGM 267
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 494
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 181
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 182 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 238
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 239 TDPSQRLVQNCLWTLRNLSDAATKQEGM 266
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 493
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 71 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 126
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 127 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 180
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 181 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 237
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 238 TDPSQRLVQNCLWTLRNLSDAATKQEGM 265
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 492
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 70 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 179
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 180 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 236
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQEGM 264
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 491
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C A LS+ +G + A+ ++G P LV++L P SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 181
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 182 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 238
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 239 TDPSQRLVQNCLWTLRNLSDAATKQEGM 266
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTS----------ENTR 110
+ G +PR ++ L R Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK 493
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 25/208 (12%)
Query: 212 NDDEVLTDACWA-----LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
N ++V T C + LS+ +G + A+ ++G P LV +L P SVL A+ T+
Sbjct: 203 NTNDVETARCTSGTLHNLSHHREG----LLAIFKSGGIPALVNMLGSPVDSVLFHAITTL 258
Query: 267 GNIV---TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT--ISNITAGNVNXXX 321
N++ G M + Q + LL+ K ++K A T + + GN
Sbjct: 259 HNLLLHQEGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKL 312
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGS--NEQIKFLVSQGCIKPLCDLL 379
LVN++ +E + W S S + +V G ++ L L
Sbjct: 313 IILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 369
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNM 407
P R+V CL L N+ A ++ M
Sbjct: 370 TDPSQRLVQNCLWTLRNLSDAATKQEGM 397
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQF----------EAAWALTNIASGTSENTR 110
+ G +PR ++ L R Q QF EA +I + N
Sbjct: 528 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 146
V+ +P+FV+LL SP ++++ A L +A D
Sbjct: 588 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623
>pdb|4AHO|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
pdb|4AHO|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia-lysine At Position 165
Length = 299
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 164 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 218
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 155 IEQFSELFNHEKIVGVXYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 206
Query: 219 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 252
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 207 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 266
Query: 253 HPSPSVLIP 261
H +P
Sbjct: 267 HRGIDAGLP 275
>pdb|4AHP|A Chain A, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|B Chain B, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|C Chain C, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
pdb|4AHP|D Chain D, Crystal Structure Of Wild Type N-acetylneuraminic Acid
Lyase From Staphylococcus Aureus
Length = 298
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 164 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 218
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVKYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 219 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 252
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 253 HPSPSVLIP 261
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|4AH7|A Chain A, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|B Chain B, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|C Chain C, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AH7|D Chain D, Structure Of Wild Type Stapylococcus Aureus
N-acetylneuraminic Acid Lyase In Complex With Pyruvate
pdb|4AMA|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
pdb|4AMA|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase From
Staphylococcus Aureus With The Chemical Modification
Thia- Lysine At Position 165 In Complex With Pyruvate
Length = 298
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 164 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 218
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVXYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 219 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 252
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 253 HPSPSVLIP 261
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|4AHQ|A Chain A, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|B Chain B, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|C Chain C, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
pdb|4AHQ|D Chain D, Crystal Structure Of N-acetylneuraminic Acid Lyase Mutant
K165c From Staphylococcus Aureus
Length = 298
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 47/129 (36%), Gaps = 39/129 (30%)
Query: 164 LAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT----- 218
+ QF+E + +T NF L E+ R A P ++LI S DE+L
Sbjct: 154 IEQFSELFNHEKIVGVCYTAPNFF------LLERIRKAFP--DKLILSGFDEMLVQATIS 205
Query: 219 --DACWALSY------------------------LSDGTNDKIQAVIEAGVCPRLVELLR 252
D +Y L +ND I+ V+ G+ P L E+LR
Sbjct: 206 GVDGAIGSTYNVNGRRARKIFDLARQGQIQEAYQLQHDSNDIIETVLSMGIYPTLKEILR 265
Query: 253 HPSPSVLIP 261
H +P
Sbjct: 266 HRGIDAGLP 274
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 78/194 (40%), Gaps = 29/194 (14%)
Query: 224 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 283
LS+ +G + A+ ++G P LV +L P SVL A+ T+ N++ + +
Sbjct: 89 LSHHREG----LLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLA 144
Query: 284 QALPCLLDLLTQNYKKSIK-KEACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFE 342
L ++ LL +N K + C + + GN LV ++ N +E
Sbjct: 145 DGLQKMVPLLNKNNPKFLAITTDCLQL--LAYGNQESKLIILANGGPQALVQIMRNYSYE 202
Query: 343 IKKEAAWAISNA----TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL------- 391
+ W S + SN+ +V G ++ L L PR+V CL
Sbjct: 203 ---KLLWTTSRVLKVLSVCPSNK--PAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLS 257
Query: 392 ------EGLENILK 399
EGLE++LK
Sbjct: 258 DVATKQEGLESVLK 271
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 110/270 (40%), Gaps = 34/270 (12%)
Query: 103 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV-LSNG--A 159
S E + G +P VR+LSSP + V A+ L N+ + V L++G
Sbjct: 90 SHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQK 149
Query: 160 LMPLLAQFN--------EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS 211
++PLL + N + +L N L G PQ L + R +
Sbjct: 150 MVPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMR----------NY 199
Query: 212 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271
+ +++L L LS ++K A++EAG L + L SP ++ L T+ N+
Sbjct: 200 SYEKLLWTTSRVLKVLSVCPSNK-PAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNL-- 256
Query: 272 GDDMQTQCIINHQALPCLLDLLTQNYK---KSIKKEACWTISNITAGNVNXXXXXXXXXX 328
D+ T+ + L +L +L ++ A T+SN+T N
Sbjct: 257 -SDVATK----QEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSG 311
Query: 329 XXPLVNLLLNA--EFEIKKEAAWAISNATS 356
L++ +L A + +I + A A+ + TS
Sbjct: 312 VEALIHAILRAGDKDDITEPAVCALRHLTS 341
>pdb|2X5W|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Substrate Cholest-4-En-3-One
Length = 440
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 79 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 134
Query: 110 RVVIDHGAVPIFVRLLSSPTDDVREQA 136
R +I G P R + D+++E+A
Sbjct: 135 RKIISRGFTP---RAVGRLHDELQERA 158
>pdb|3IVY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, P212121 Crystal Form
pdb|3IW0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125, C2221 Crystal Form
pdb|3IW1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Androstenedione
pdb|3IW2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Cytochrome
P450 Cyp125 In Complex With Econazole
Length = 433
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 72 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 127
Query: 110 RVVIDHGAVPIFVRLLSSPTDDVREQA 136
R +I G P R + D+++E+A
Sbjct: 128 RKIISRGFTP---RAVGRLHDELQERA 151
>pdb|2XC3|A Chain A, X-Ray Structure Of Mycobacterium Tuberculosis Cyp125 Bound
To The Reverse Type I Inhibitor
Length = 424
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 63 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 118
Query: 110 RVVIDHGAVPIFVRLLSSPTDDVREQA 136
R +I G P R + D+++E+A
Sbjct: 119 RKIISRGFTP---RAVGRLHDELQERA 142
>pdb|2XN8|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125
Length = 423
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 62 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 117
Query: 110 RVVIDHGAVPIFVRLLSSPTDDVREQA 136
R +I G P R + D+++E+A
Sbjct: 118 RKIISRGFTP---RAVGRLHDELQERA 141
>pdb|2X5L|A Chain A, X-Ray Structure Of The Substrate-Free Mycobacterium
Tuberculosis Cytochrome P450 Cyp125, Alternative Crystal
Form
Length = 431
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109
A T+ + I R + ++GV+PRF ++R+D +F + N+ +
Sbjct: 70 AITKLNDVKEISRHSDVFSSYENGVIPRFKNDIAREDIEVQRF----VMLNMDAPHHTRL 125
Query: 110 RVVIDHGAVPIFVRLLSSPTDDVREQA 136
R +I G P R + D+++E+A
Sbjct: 126 RKIISRGFTP---RAVGRLHDELQERA 149
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 71 QSGVVPRFIEFLSRDD----------FPQLQFEAAWALTNIASGTSE---------NTRV 111
+ G +PR ++ L R Q QF I G + + R+
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 112 VIDH-GAVPIFVRLLSSPTDDVREQAVWALGNVAGD 146
VI +P+FV+LL SP ++++ A L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 108/278 (38%), Gaps = 43/278 (15%)
Query: 82 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 139
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 207 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 266
Query: 140 LGNVA----GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 267 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-------- 318
Query: 196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 255
+ + + A+ D L L+Y S TN A+IE+G
Sbjct: 319 TENKADICAV--------DGALAFLVGTLTYRSQ-TN--TLAIIESGG------------ 355
Query: 256 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 315
LR V +++ ++ Q + + L LL L +++ +I AC T+ N++A
Sbjct: 356 -----GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSAR 409
Query: 316 NVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISN 353
N L NL+ + I +A A+ N
Sbjct: 410 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 43/241 (17%)
Query: 82 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 139
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 93 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 152
Query: 140 LGNVA----GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 153 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-------- 204
Query: 196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 255
+ + + A+ D L L+Y S TN A+IE+G
Sbjct: 205 TENKADICAV--------DGALAFLVGTLTYRSQ-TN--TLAIIESGG------------ 241
Query: 256 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 315
LR V +++ ++ Q + + L LL L +++ +I AC T+ N++A
Sbjct: 242 -----GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSAR 295
Query: 316 N 316
N
Sbjct: 296 N 296
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 43/241 (17%)
Query: 82 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 139
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 91 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150
Query: 140 LGNVA----GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-------- 202
Query: 196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 255
+ + + A+ D L L+Y S TN A+IE+G
Sbjct: 203 TENKADICAV--------DGALAFLVGTLTYRSQ-TN--TLAIIESGG------------ 239
Query: 256 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 315
LR V +++ ++ Q + + L LL L +++ +I AC T+ N++A
Sbjct: 240 -----GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSAR 293
Query: 316 N 316
N
Sbjct: 294 N 294
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 22/182 (12%)
Query: 77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 136
++ L DD P ++ AA L A + + +P+F L S D VR A
Sbjct: 161 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLA 217
Query: 137 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 196
V A N+A P+ DL +MP L Q E + +W + K L +
Sbjct: 218 VEACVNIAQLLPQ-EDL---EALVMPTLRQAAE--------DKSWRVRYMVADKFTELQK 265
Query: 197 QTRPAL------PALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVE 249
P + PA + L+ + EV A + + + + D + VI + + P + E
Sbjct: 266 AVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 325
Query: 250 LL 251
L+
Sbjct: 326 LV 327
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 22/182 (12%)
Query: 77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 136
++ L DD P ++ AA L A + + +P+F L S D VR A
Sbjct: 159 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLA 215
Query: 137 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 196
V A N+A P+ DL +MP L Q E + +W + K L +
Sbjct: 216 VEACVNIAQLLPQ-EDL---EALVMPTLRQAAE--------DKSWRVRYMVADKFTELQK 263
Query: 197 QTRPAL------PALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVE 249
P + PA + L+ + EV A + + + + D + VI + + P + E
Sbjct: 264 AVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 323
Query: 250 LL 251
L+
Sbjct: 324 LV 325
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 22/182 (12%)
Query: 77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 136
++ L DD P ++ AA L A + + +P+F L S D VR A
Sbjct: 168 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLA 224
Query: 137 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 196
V A N+A P+ DL +MP L Q E + +W + K L +
Sbjct: 225 VEACVNIAQLLPQ-EDL---EALVMPTLRQAAE--------DKSWRVRYMVADKFTELQK 272
Query: 197 QTRPAL------PALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVE 249
P + PA + L+ + EV A + + + + D + VI + + P + E
Sbjct: 273 AVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 332
Query: 250 LL 251
L+
Sbjct: 333 LV 334
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 399 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453
K G + MG G +LFAQ D G +++ L D+ +I E L YW+
Sbjct: 195 KGGTGDCKMGGNYGSSLFAQCEDVDNGCQQVLWLYGRDH-QITEVGTMNLFLYWI 248
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 22/182 (12%)
Query: 77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 136
++ L DD P ++ AA L A + + +P+F L S D VR A
Sbjct: 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLA 223
Query: 137 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 196
V A N+A P+ DL +MP L Q E + +W + K L +
Sbjct: 224 VEACVNIAQLLPQ-EDL---EALVMPTLRQAAE--------DKSWRVRYMVADKFTELQK 271
Query: 197 QTRPAL------PALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVE 249
P + PA + L+ + EV A + + + + D + VI + + P + E
Sbjct: 272 AVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331
Query: 250 LL 251
L+
Sbjct: 332 LV 333
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 97/241 (40%), Gaps = 43/241 (17%)
Query: 82 LSRDDFP-QLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWA 139
L+ D + L+ A ALTN+ G N + G + V L S ++D+++
Sbjct: 91 LTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150
Query: 140 LGNVA----GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195
L N++ +S K V S ALM + + + L + +A W LS C
Sbjct: 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-------- 202
Query: 196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 255
+ + + A+ D L L+Y S TN A+IE+G
Sbjct: 203 TENKADICAV--------DGALAFLVGTLTYRSQ-TN--TLAIIESGG------------ 239
Query: 256 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 315
LR V +++ ++ Q + + L LL L +++ +I AC T+ N++A
Sbjct: 240 -----GILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSAR 293
Query: 316 N 316
N
Sbjct: 294 N 294
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Query: 71 QSGVVPRFIEFLSRD-DFPQLQFE--AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 127
+ +VP + F+ P ++ A A +I G N + A+P + L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKD 419
Query: 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSN 185
P+ VR+ W +G + P+ +++ L PLL E A+ + N W S+
Sbjct: 420 PSVVVRDTTAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSS 476
Query: 186 FCRG 189
Sbjct: 477 LAEA 480
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 22/182 (12%)
Query: 77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 136
++ L DD P ++ AA L A + + +P+F L S D VR A
Sbjct: 168 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLA 224
Query: 137 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 196
V A N+A P+ DL +MP L Q E + +W + K L +
Sbjct: 225 VEACVNIAQLLPQ-EDL---EALVMPTLRQAAE--------DKSWRVRYMVADKFTELQK 272
Query: 197 QTRPAL------PALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVE 249
P + PA + L+ + EV A + + + + D + VI + P + E
Sbjct: 273 AVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKE 332
Query: 250 LL 251
L+
Sbjct: 333 LV 334
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 22/182 (12%)
Query: 77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQA 136
++ L DD P ++ AA L A + + +P+F L S D VR A
Sbjct: 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLA 223
Query: 137 VWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 196
V A N+A P+ DL +MP L Q E + +W + K L +
Sbjct: 224 VEACVNIAQLLPQ-EDL---EALVMPTLRQAAE--------DKSWRVRYMVADKFTELQK 271
Query: 197 QTRPAL------PALERLIHSNDDEVLTDACWALS-YLSDGTNDKIQAVIEAGVCPRLVE 249
P + PA + L+ + EV A + + + + D + VI + P + E
Sbjct: 272 AVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKE 331
Query: 250 LL 251
L+
Sbjct: 332 LV 333
>pdb|2CVO|A Chain A, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|B Chain B, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|C Chain C, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
pdb|2CVO|D Chain D, Crystal Structure Of Putative N-Acetyl-Gamma-Glutamyl-
Phosphate Reductase (Ak071544) From Rice (Oryza Sativa)
Length = 366
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 124
P+LQ EA + LT + N R+V + G P ++L
Sbjct: 141 PELQQEAVYGLTEVLRNEIRNARLVANPGCYPTSIQL 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,684,186
Number of Sequences: 62578
Number of extensions: 528986
Number of successful extensions: 2269
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1369
Number of HSP's gapped (non-prelim): 138
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)