Query 011316
Match_columns 488
No_of_seqs 343 out of 2479
Neff 10.8
Searched_HMMs 46136
Date Thu Mar 28 23:59:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 2.4E-62 5.2E-67 455.1 46.9 447 30-487 66-514 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 5.5E-60 1.2E-64 406.8 34.6 441 30-474 71-516 (526)
3 KOG0166 Karyopherin (importin) 100.0 2.3E-43 4.9E-48 328.6 29.4 378 16-402 100-489 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 3.5E-43 7.7E-48 303.1 22.8 376 13-399 102-496 (526)
5 PLN03200 cellulose synthase-in 100.0 2.3E-37 5E-42 329.6 43.5 407 30-457 189-642 (2102)
6 PLN03200 cellulose synthase-in 100.0 1.2E-36 2.6E-41 324.1 44.0 416 29-454 403-861 (2102)
7 KOG4224 Armadillo repeat prote 100.0 2.6E-30 5.7E-35 225.6 25.8 364 27-401 123-495 (550)
8 KOG4224 Armadillo repeat prote 100.0 1.3E-30 2.9E-35 227.4 23.9 365 27-401 82-448 (550)
9 PF05804 KAP: Kinesin-associat 100.0 3.7E-25 8.1E-30 218.9 36.2 379 44-450 263-646 (708)
10 PF05804 KAP: Kinesin-associat 99.9 4.7E-23 1E-27 204.1 34.6 364 26-404 286-654 (708)
11 KOG0168 Putative ubiquitin fus 99.9 5.2E-19 1.1E-23 170.6 29.5 389 30-434 167-653 (1051)
12 KOG1048 Neural adherens juncti 99.8 2.3E-18 5E-23 166.9 25.9 365 74-455 234-686 (717)
13 KOG1048 Neural adherens juncti 99.8 1E-17 2.3E-22 162.4 25.7 365 30-402 233-687 (717)
14 PF10508 Proteasom_PSMB: Prote 99.8 5.2E-16 1.1E-20 152.8 36.3 399 34-455 42-464 (503)
15 PF10508 Proteasom_PSMB: Prote 99.8 4.5E-16 9.7E-21 153.3 35.0 366 76-453 41-420 (503)
16 KOG4500 Rho/Rac GTPase guanine 99.8 4.8E-17 1E-21 146.1 21.5 381 41-439 53-460 (604)
17 KOG2171 Karyopherin (importin) 99.8 2.6E-15 5.7E-20 151.0 33.3 392 30-446 79-539 (1075)
18 KOG2023 Nuclear transport rece 99.8 4.5E-17 9.8E-22 153.5 19.5 413 34-472 94-636 (885)
19 KOG1222 Kinesin associated pro 99.7 6.8E-15 1.5E-19 134.2 27.6 378 42-448 275-658 (791)
20 KOG4500 Rho/Rac GTPase guanine 99.7 5.9E-15 1.3E-19 132.8 26.7 404 30-448 87-514 (604)
21 KOG2171 Karyopherin (importin) 99.7 1.5E-14 3.3E-19 145.6 31.5 360 30-399 118-549 (1075)
22 KOG1222 Kinesin associated pro 99.7 3.4E-14 7.3E-19 129.8 30.5 361 30-406 304-670 (791)
23 KOG4199 Uncharacterized conser 99.7 1.2E-14 2.5E-19 126.9 25.4 310 40-356 117-444 (461)
24 KOG2122 Beta-catenin-binding p 99.7 6.5E-15 1.4E-19 149.5 27.1 362 33-401 200-603 (2195)
25 KOG4199 Uncharacterized conser 99.7 1.9E-13 4.1E-18 119.5 28.9 317 72-397 103-442 (461)
26 KOG1293 Proteins containing ar 99.7 3.6E-14 7.8E-19 134.6 26.0 364 34-400 13-534 (678)
27 PRK09687 putative lyase; Provi 99.7 1.4E-14 3.1E-19 131.0 21.2 256 73-396 23-279 (280)
28 KOG2122 Beta-catenin-binding p 99.7 9.1E-15 2E-19 148.5 21.3 326 30-358 235-603 (2195)
29 PRK09687 putative lyase; Provi 99.7 3.5E-14 7.7E-19 128.4 23.3 255 30-353 23-279 (280)
30 PRK13800 putative oxidoreducta 99.6 2E-13 4.3E-18 144.3 29.6 276 30-396 621-896 (897)
31 PF04826 Arm_2: Armadillo-like 99.6 5.9E-13 1.3E-17 117.6 22.1 238 197-444 9-253 (254)
32 PRK13800 putative oxidoreducta 99.6 1.5E-12 3.2E-17 137.8 28.8 277 72-450 620-896 (897)
33 PF01602 Adaptin_N: Adaptin N 99.5 4.8E-13 1E-17 135.3 21.1 361 31-457 80-448 (526)
34 PF04826 Arm_2: Armadillo-like 99.5 9.4E-13 2E-17 116.3 17.2 196 70-272 9-206 (254)
35 PF01602 Adaptin_N: Adaptin N 99.5 6.9E-11 1.5E-15 119.6 31.8 358 34-453 8-369 (526)
36 KOG2023 Nuclear transport rece 99.5 8.5E-13 1.8E-17 125.2 16.2 314 116-454 128-506 (885)
37 PTZ00429 beta-adaptin; Provisi 99.5 1.6E-10 3.4E-15 117.2 33.3 370 32-454 70-472 (746)
38 cd00256 VATPase_H VATPase_H, r 99.5 2E-10 4.2E-15 108.3 29.3 322 116-452 53-424 (429)
39 PTZ00429 beta-adaptin; Provisi 99.5 6.4E-10 1.4E-14 112.9 34.9 294 30-356 32-326 (746)
40 cd00020 ARM Armadillo/beta-cat 99.5 2.6E-12 5.7E-17 102.1 14.1 119 68-188 2-120 (120)
41 KOG1293 Proteins containing ar 99.4 8.9E-11 1.9E-15 112.0 25.8 360 82-456 18-536 (678)
42 cd00256 VATPase_H VATPase_H, r 99.4 6.4E-11 1.4E-15 111.5 24.6 323 31-356 54-425 (429)
43 KOG1241 Karyopherin (importin) 99.4 4.6E-11 1E-15 115.4 23.3 360 34-404 94-482 (859)
44 cd00020 ARM Armadillo/beta-cat 99.4 5.9E-12 1.3E-16 100.1 13.5 118 238-356 3-120 (120)
45 KOG0168 Putative ubiquitin fus 99.3 3.4E-10 7.4E-15 110.6 23.6 343 30-380 211-653 (1051)
46 KOG1241 Karyopherin (importin) 99.3 1.4E-09 3E-14 105.5 24.1 329 31-366 365-721 (859)
47 KOG0213 Splicing factor 3b, su 99.3 1.5E-09 3.2E-14 104.8 23.5 388 30-454 716-1143(1172)
48 KOG1059 Vesicle coat complex A 99.2 3.7E-08 8E-13 95.2 27.8 220 30-271 144-365 (877)
49 KOG2759 Vacuolar H+-ATPase V1 99.2 7E-08 1.5E-12 88.0 27.9 322 117-453 66-438 (442)
50 KOG2759 Vacuolar H+-ATPase V1 99.2 4E-09 8.8E-14 95.9 19.5 280 32-315 116-439 (442)
51 KOG1062 Vesicle coat complex A 99.2 2.4E-08 5.1E-13 97.7 25.9 372 30-447 142-575 (866)
52 KOG0946 ER-Golgi vesicle-tethe 99.2 6.8E-08 1.5E-12 94.3 28.8 326 73-404 22-404 (970)
53 KOG2160 Armadillo/beta-catenin 99.1 1.4E-08 3.1E-13 91.2 21.0 188 213-402 96-285 (342)
54 KOG2160 Armadillo/beta-catenin 99.1 3.8E-09 8.2E-14 94.9 16.6 184 87-271 96-282 (342)
55 KOG1789 Endocytosis protein RM 99.1 2.2E-07 4.9E-12 93.3 29.6 331 45-382 1740-2142(2235)
56 COG5181 HSH155 U2 snRNP splice 99.1 2.5E-09 5.3E-14 101.3 15.0 400 31-454 522-948 (975)
57 KOG1062 Vesicle coat complex A 99.1 1.1E-07 2.3E-12 93.4 26.1 366 34-452 111-494 (866)
58 PF03224 V-ATPase_H_N: V-ATPas 99.1 2.9E-09 6.3E-14 99.2 15.0 226 118-346 57-304 (312)
59 KOG1061 Vesicle coat complex A 99.0 1.1E-08 2.4E-13 100.0 17.7 382 30-460 49-460 (734)
60 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.4E-08 2.9E-13 94.7 16.7 227 160-389 57-304 (312)
61 KOG0213 Splicing factor 3b, su 99.0 9.9E-07 2.1E-11 85.8 29.1 407 12-451 618-1063(1172)
62 KOG1824 TATA-binding protein-i 99.0 2.1E-07 4.5E-12 92.7 23.6 352 34-400 9-403 (1233)
63 COG5215 KAP95 Karyopherin (imp 99.0 1.5E-07 3.3E-12 88.8 20.3 353 34-401 98-481 (858)
64 COG5215 KAP95 Karyopherin (imp 98.9 3.9E-07 8.5E-12 86.0 22.8 361 29-403 128-533 (858)
65 KOG1061 Vesicle coat complex A 98.9 2E-07 4.4E-12 91.4 21.7 301 30-356 86-415 (734)
66 KOG0946 ER-Golgi vesicle-tethe 98.9 1.9E-05 4.2E-10 77.7 34.0 350 30-381 122-535 (970)
67 KOG1242 Protein containing ada 98.9 2.5E-06 5.4E-11 82.1 27.7 362 73-468 96-462 (569)
68 COG5181 HSH155 U2 snRNP splice 98.9 3.5E-07 7.5E-12 87.1 20.4 302 74-398 605-911 (975)
69 KOG3678 SARM protein (with ste 98.9 1.3E-07 2.9E-12 87.1 16.7 273 66-355 173-451 (832)
70 KOG0212 Uncharacterized conser 98.9 1.6E-07 3.5E-12 88.4 17.5 321 70-403 81-410 (675)
71 KOG1517 Guanine nucleotide bin 98.8 3.4E-07 7.4E-12 92.1 18.8 277 42-329 448-747 (1387)
72 KOG0212 Uncharacterized conser 98.8 2.2E-06 4.8E-11 81.0 22.8 353 30-399 84-444 (675)
73 KOG3678 SARM protein (with ste 98.8 2.8E-07 6E-12 85.0 16.3 267 30-313 180-451 (832)
74 KOG1060 Vesicle coat complex A 98.8 5.5E-06 1.2E-10 81.4 25.8 366 33-454 38-459 (968)
75 KOG0211 Protein phosphatase 2A 98.8 3.7E-06 8E-11 85.2 25.6 385 30-450 237-661 (759)
76 KOG2973 Uncharacterized conser 98.8 5.6E-06 1.2E-10 72.7 22.5 270 161-453 6-315 (353)
77 KOG4413 26S proteasome regulat 98.8 2.2E-05 4.7E-10 69.6 26.3 344 30-377 82-459 (524)
78 KOG1060 Vesicle coat complex A 98.7 8.8E-06 1.9E-10 80.0 25.0 256 81-362 151-464 (968)
79 KOG1824 TATA-binding protein-i 98.7 2.9E-06 6.2E-11 84.9 22.0 315 32-368 570-898 (1233)
80 KOG1517 Guanine nucleotide bin 98.7 5.1E-07 1.1E-11 90.9 16.7 247 30-280 472-741 (1387)
81 PF05536 Neurochondrin: Neuroc 98.7 5.1E-05 1.1E-09 75.6 30.7 382 30-432 5-459 (543)
82 KOG1059 Vesicle coat complex A 98.7 2.3E-05 5.1E-10 76.4 26.9 255 74-358 145-403 (877)
83 PF14664 RICTOR_N: Rapamycin-i 98.7 1.3E-05 2.8E-10 75.7 23.1 335 98-453 7-364 (371)
84 KOG1242 Protein containing ada 98.7 1.2E-05 2.6E-10 77.5 22.9 346 30-403 96-448 (569)
85 COG5369 Uncharacterized conser 98.7 2.8E-07 6.1E-12 86.4 11.7 310 133-451 406-739 (743)
86 COG5369 Uncharacterized conser 98.6 2E-07 4.3E-12 87.3 10.6 299 92-397 407-739 (743)
87 KOG1058 Vesicle coat complex C 98.6 2.2E-05 4.8E-10 76.9 24.5 318 80-456 106-466 (948)
88 KOG4413 26S proteasome regulat 98.6 1.7E-05 3.7E-10 70.3 21.3 340 6-353 106-481 (524)
89 TIGR02270 conserved hypothetic 98.6 2.1E-05 4.6E-10 75.1 22.7 242 30-356 54-296 (410)
90 KOG2973 Uncharacterized conser 98.6 1.9E-05 4.1E-10 69.5 20.0 272 32-315 5-316 (353)
91 KOG1789 Endocytosis protein RM 98.6 8.1E-05 1.8E-09 75.7 26.4 313 19-339 1760-2142(2235)
92 KOG4646 Uncharacterized conser 98.5 1.6E-06 3.5E-11 66.2 11.0 154 284-452 16-169 (173)
93 KOG2259 Uncharacterized conser 98.5 4.4E-05 9.6E-10 73.9 22.9 221 162-400 202-440 (823)
94 KOG1077 Vesicle coat complex A 98.5 0.00027 5.9E-09 69.1 27.9 290 75-391 113-425 (938)
95 KOG1077 Vesicle coat complex A 98.5 0.00017 3.7E-09 70.4 26.4 338 77-453 78-437 (938)
96 PF14664 RICTOR_N: Rapamycin-i 98.5 1.8E-05 4E-10 74.6 19.5 314 32-355 27-363 (371)
97 TIGR02270 conserved hypothetic 98.5 6E-05 1.3E-09 72.1 23.0 244 73-400 54-297 (410)
98 COG1413 FOG: HEAT repeat [Ener 98.5 0.00016 3.5E-09 68.6 25.2 251 30-357 43-305 (335)
99 KOG2259 Uncharacterized conser 98.4 3.6E-05 7.8E-10 74.4 19.3 227 119-365 201-483 (823)
100 COG5231 VMA13 Vacuolar H+-ATPa 98.4 1.6E-05 3.5E-10 70.1 15.5 235 76-314 152-428 (432)
101 COG5240 SEC21 Vesicle coat com 98.4 8.6E-05 1.9E-09 70.8 21.0 350 42-452 202-554 (898)
102 KOG1240 Protein kinase contain 98.4 2.6E-05 5.6E-10 80.4 17.8 268 32-314 424-725 (1431)
103 KOG0915 Uncharacterized conser 98.4 5.3E-05 1.1E-09 79.9 20.4 338 33-389 821-1191(1702)
104 PF12460 MMS19_C: RNAPII trans 98.3 0.0014 3E-08 63.9 29.2 350 32-402 1-397 (415)
105 KOG1240 Protein kinase contain 98.3 4.7E-05 1E-09 78.5 19.0 297 117-453 423-725 (1431)
106 KOG0915 Uncharacterized conser 98.3 0.00035 7.6E-09 74.1 25.5 316 44-368 971-1318(1702)
107 COG1413 FOG: HEAT repeat [Ener 98.3 0.0002 4.4E-09 67.9 21.3 248 73-397 43-302 (335)
108 KOG0211 Protein phosphatase 2A 98.2 0.00073 1.6E-08 69.0 25.1 352 70-454 234-626 (759)
109 KOG4646 Uncharacterized conser 98.2 1E-05 2.2E-10 61.9 8.5 134 158-292 16-149 (173)
110 COG5231 VMA13 Vacuolar H+-ATPa 98.2 0.00017 3.6E-09 63.9 17.0 237 204-453 153-428 (432)
111 COG5096 Vesicle coat complex, 98.2 0.0014 3.1E-08 66.4 25.8 140 32-189 57-196 (757)
112 KOG2062 26S proteasome regulat 98.2 0.00011 2.4E-09 72.1 16.9 135 200-359 519-656 (929)
113 KOG1248 Uncharacterized conser 98.1 0.0023 5E-08 66.7 26.2 237 162-403 657-902 (1176)
114 PF05536 Neurochondrin: Neuroc 98.1 0.00016 3.5E-09 72.1 17.8 235 74-314 6-261 (543)
115 COG5240 SEC21 Vesicle coat com 98.1 0.00024 5.2E-09 67.9 17.7 288 75-398 266-554 (898)
116 PF10165 Ric8: Guanine nucleot 98.1 0.00078 1.7E-08 65.8 21.7 255 63-318 12-341 (446)
117 PF00514 Arm: Armadillo/beta-c 98.1 6.3E-06 1.4E-10 50.7 4.7 41 105-145 1-41 (41)
118 PF12348 CLASP_N: CLASP N term 98.1 7.6E-05 1.6E-09 66.5 12.9 186 252-453 17-206 (228)
119 PF00514 Arm: Armadillo/beta-c 98.1 8.1E-06 1.8E-10 50.2 4.6 41 316-356 1-41 (41)
120 KOG1991 Nuclear transport rece 98.0 0.0074 1.6E-07 61.9 27.1 341 49-400 391-758 (1010)
121 KOG4535 HEAT and armadillo rep 98.0 0.00042 9.1E-09 64.9 16.8 357 41-402 118-562 (728)
122 PF12348 CLASP_N: CLASP N term 98.0 9E-05 2E-09 66.0 12.3 186 210-403 17-210 (228)
123 COG5096 Vesicle coat complex, 98.0 0.015 3.3E-07 59.2 28.6 169 39-230 28-196 (757)
124 KOG2734 Uncharacterized conser 98.0 0.0021 4.7E-08 59.7 20.0 246 25-271 120-400 (536)
125 KOG1943 Beta-tubulin folding c 97.9 0.0067 1.5E-07 62.7 25.0 253 116-391 341-603 (1133)
126 KOG2274 Predicted importin 9 [ 97.9 0.0023 4.9E-08 64.8 20.7 321 35-368 454-792 (1005)
127 KOG1943 Beta-tubulin folding c 97.9 0.0068 1.5E-07 62.7 24.3 261 72-356 340-611 (1133)
128 PF13646 HEAT_2: HEAT repeats; 97.9 4.6E-05 9.9E-10 56.3 7.1 87 75-184 1-88 (88)
129 PF13646 HEAT_2: HEAT repeats; 97.9 4.4E-05 9.6E-10 56.4 6.7 86 32-141 1-88 (88)
130 PF12460 MMS19_C: RNAPII trans 97.9 0.0077 1.7E-07 58.7 23.7 297 43-358 56-396 (415)
131 PF13513 HEAT_EZ: HEAT-like re 97.9 3.6E-05 7.8E-10 50.9 5.1 55 299-354 1-55 (55)
132 PF12755 Vac14_Fab1_bd: Vacuol 97.8 0.00013 2.8E-09 54.2 8.4 95 301-399 2-96 (97)
133 KOG1991 Nuclear transport rece 97.8 0.019 4.2E-07 59.0 25.6 392 32-445 464-883 (1010)
134 KOG1078 Vesicle coat complex C 97.8 0.0036 7.8E-08 62.4 19.1 286 117-452 246-531 (865)
135 KOG4535 HEAT and armadillo rep 97.8 0.0032 7E-08 59.2 17.8 405 35-456 52-562 (728)
136 KOG1058 Vesicle coat complex C 97.7 0.0016 3.4E-08 64.5 16.1 327 33-402 102-466 (948)
137 KOG1078 Vesicle coat complex C 97.7 0.0028 6.1E-08 63.1 17.4 140 200-355 391-531 (865)
138 PF08569 Mo25: Mo25-like; Int 97.7 0.019 4.2E-07 53.4 21.9 225 199-436 75-313 (335)
139 KOG1020 Sister chromatid cohes 97.6 0.16 3.6E-06 54.9 31.6 394 31-452 817-1253(1692)
140 KOG2734 Uncharacterized conser 97.6 0.066 1.4E-06 50.2 26.5 259 140-402 108-403 (536)
141 KOG1967 DNA repair/transcripti 97.5 0.0011 2.4E-08 67.0 12.3 189 118-311 817-1021(1030)
142 PF09759 Atx10homo_assoc: Spin 97.5 0.00051 1.1E-08 51.0 7.6 68 90-157 2-71 (102)
143 KOG1248 Uncharacterized conser 97.5 0.014 2.9E-07 61.3 20.2 243 78-325 658-910 (1176)
144 PF10165 Ric8: Guanine nucleot 97.5 0.025 5.4E-07 55.4 21.5 238 30-271 22-337 (446)
145 PF05918 API5: Apoptosis inhib 97.5 0.017 3.6E-07 57.0 19.8 295 77-403 27-349 (556)
146 KOG0567 HEAT repeat-containing 97.5 0.015 3.1E-07 50.7 16.9 256 75-397 5-278 (289)
147 PF13513 HEAT_EZ: HEAT-like re 97.5 0.00022 4.7E-09 47.1 4.7 55 214-269 1-55 (55)
148 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.0027 5.8E-08 47.3 10.8 93 344-452 3-95 (97)
149 PF08569 Mo25: Mo25-like; Int 97.5 0.014 3E-07 54.4 17.6 203 236-450 70-280 (335)
150 KOG2274 Predicted importin 9 [ 97.5 0.023 5E-07 57.8 20.0 238 77-322 453-697 (1005)
151 KOG0567 HEAT repeat-containing 97.4 0.018 4E-07 50.1 16.2 254 33-355 6-279 (289)
152 PF12717 Cnd1: non-SMC mitotic 97.4 0.0071 1.5E-07 51.3 13.9 93 213-315 1-93 (178)
153 PF11841 DUF3361: Domain of un 97.4 0.0064 1.4E-07 49.2 12.5 127 150-276 3-136 (160)
154 PF11841 DUF3361: Domain of un 97.4 0.0084 1.8E-07 48.5 13.1 130 236-366 5-141 (160)
155 smart00185 ARM Armadillo/beta- 97.3 0.00063 1.4E-08 41.7 5.2 39 106-144 2-40 (41)
156 PF12717 Cnd1: non-SMC mitotic 97.3 0.015 3.3E-07 49.2 15.2 93 255-357 1-93 (178)
157 COG5116 RPN2 26S proteasome re 97.3 0.019 4.1E-07 55.4 16.7 208 118-362 448-656 (926)
158 PF05004 IFRD: Interferon-rela 97.3 0.012 2.7E-07 54.4 15.4 200 245-461 46-265 (309)
159 PF05004 IFRD: Interferon-rela 97.3 0.03 6.5E-07 51.9 17.5 197 202-403 45-261 (309)
160 COG5656 SXM1 Importin, protein 97.3 0.046 9.9E-07 54.6 19.1 298 49-358 389-713 (970)
161 KOG2062 26S proteasome regulat 97.3 0.063 1.4E-06 53.6 19.9 131 245-399 522-653 (929)
162 smart00185 ARM Armadillo/beta- 97.2 0.00099 2.1E-08 40.8 5.2 39 317-355 2-40 (41)
163 KOG4151 Myosin assembly protei 97.2 0.019 4.1E-07 57.8 16.4 238 151-396 497-738 (748)
164 KOG2032 Uncharacterized conser 97.2 0.059 1.3E-06 51.3 18.3 270 115-399 253-531 (533)
165 KOG4653 Uncharacterized conser 97.2 0.0078 1.7E-07 60.7 13.1 223 78-311 732-961 (982)
166 PF06025 DUF913: Domain of Unk 97.1 0.027 5.9E-07 53.6 15.9 222 93-325 3-243 (379)
167 KOG4151 Myosin assembly protei 97.1 0.0071 1.5E-07 60.7 12.0 243 105-354 493-739 (748)
168 PF04078 Rcd1: Cell differenti 97.1 0.043 9.2E-07 48.3 15.3 187 212-401 7-220 (262)
169 KOG1967 DNA repair/transcripti 97.1 0.0077 1.7E-07 61.2 12.0 189 160-354 817-1022(1030)
170 PF12719 Cnd3: Nuclear condens 97.1 0.064 1.4E-06 49.7 17.7 171 73-254 26-209 (298)
171 PF12719 Cnd3: Nuclear condens 97.0 0.18 4E-06 46.7 20.5 172 199-382 25-209 (298)
172 KOG4653 Uncharacterized conser 97.0 0.028 6.1E-07 57.0 15.2 225 119-354 730-962 (982)
173 PF09759 Atx10homo_assoc: Spin 97.0 0.0052 1.1E-07 45.7 7.5 67 258-325 2-70 (102)
174 KOG0414 Chromosome condensatio 96.9 0.029 6.2E-07 58.9 15.1 147 196-358 915-1066(1251)
175 KOG2025 Chromosome condensatio 96.9 0.13 2.8E-06 51.3 18.7 108 197-310 82-189 (892)
176 KOG2032 Uncharacterized conser 96.9 0.039 8.5E-07 52.5 14.5 150 290-454 264-417 (533)
177 PRK14707 hypothetical protein; 96.9 0.79 1.7E-05 51.8 25.3 420 32-485 165-592 (2710)
178 PF11698 V-ATPase_H_C: V-ATPas 96.8 0.0059 1.3E-07 46.7 6.9 70 371-452 44-114 (119)
179 PF05918 API5: Apoptosis inhib 96.7 0.6 1.3E-05 46.4 21.6 178 31-229 24-207 (556)
180 PF11864 DUF3384: Domain of un 96.7 0.75 1.6E-05 45.6 29.9 254 42-314 41-330 (464)
181 PF13764 E3_UbLigase_R4: E3 ub 96.6 0.96 2.1E-05 47.3 23.4 210 114-338 115-361 (802)
182 KOG2956 CLIP-associating prote 96.6 0.12 2.5E-06 49.1 15.1 173 173-356 301-477 (516)
183 KOG0414 Chromosome condensatio 96.6 0.032 7E-07 58.5 12.6 161 73-254 919-1083(1251)
184 PF04078 Rcd1: Cell differenti 96.6 0.19 4E-06 44.4 15.4 196 255-455 8-220 (262)
185 PF11698 V-ATPase_H_C: V-ATPas 96.6 0.0055 1.2E-07 46.9 5.3 73 284-356 43-115 (119)
186 KOG3036 Protein involved in ce 96.5 0.19 4.1E-06 43.5 14.7 139 304-452 98-246 (293)
187 PF11701 UNC45-central: Myosin 96.5 0.019 4E-07 47.4 8.4 147 285-450 4-156 (157)
188 KOG1243 Protein kinase [Genera 96.4 0.17 3.6E-06 50.6 15.4 257 35-315 259-516 (690)
189 PF07814 WAPL: Wings apart-lik 96.4 0.3 6.5E-06 46.6 17.0 275 75-358 23-357 (361)
190 KOG1243 Protein kinase [Genera 96.3 0.28 6E-06 49.1 16.7 194 197-404 327-520 (690)
191 KOG1020 Sister chromatid cohes 96.3 2.4 5.2E-05 46.6 28.0 143 73-230 816-961 (1692)
192 KOG1566 Conserved protein Mo25 96.2 0.66 1.4E-05 41.9 16.8 213 199-423 78-301 (342)
193 PRK14707 hypothetical protein; 96.2 3.1 6.8E-05 47.4 28.6 401 30-452 373-781 (2710)
194 KOG1820 Microtubule-associated 96.2 0.23 4.9E-06 51.8 15.9 190 201-400 254-444 (815)
195 KOG3036 Protein involved in ce 96.1 0.81 1.8E-05 39.8 19.6 139 259-400 96-248 (293)
196 KOG2956 CLIP-associating prote 96.1 0.3 6.4E-06 46.5 14.7 176 129-314 300-477 (516)
197 PF08045 CDC14: Cell division 96.0 0.13 2.9E-06 45.6 11.5 102 89-190 106-209 (257)
198 PF11701 UNC45-central: Myosin 96.0 0.067 1.5E-06 44.1 9.2 145 244-396 5-156 (157)
199 PF01603 B56: Protein phosphat 96.0 0.12 2.7E-06 50.0 12.4 250 95-357 111-371 (409)
200 KOG1949 Uncharacterized conser 96.0 2 4.3E-05 43.3 20.1 187 75-271 176-370 (1005)
201 PF06371 Drf_GBD: Diaphanous G 95.9 0.052 1.1E-06 46.5 8.9 112 30-144 66-186 (187)
202 COG5656 SXM1 Importin, protein 95.9 2.3 5E-05 43.2 22.6 276 30-314 408-711 (970)
203 KOG1820 Microtubule-associated 95.9 0.2 4.4E-06 52.2 14.2 195 120-323 257-453 (815)
204 PF08045 CDC14: Cell division 95.9 0.15 3.3E-06 45.1 11.4 101 45-146 106-208 (257)
205 PF02985 HEAT: HEAT repeat; I 95.8 0.013 2.7E-07 33.2 3.0 30 328-357 1-30 (31)
206 PF14500 MMS19_N: Dos2-interac 95.8 1.1 2.5E-05 40.3 16.9 219 77-314 3-237 (262)
207 COG5116 RPN2 26S proteasome re 95.7 0.097 2.1E-06 50.7 10.2 151 80-254 523-674 (926)
208 COG5098 Chromosome condensatio 95.7 0.52 1.1E-05 47.1 14.9 144 74-232 893-1040(1128)
209 PF02985 HEAT: HEAT repeat; I 95.6 0.016 3.5E-07 32.8 3.0 28 75-103 2-29 (31)
210 KOG2025 Chromosome condensatio 95.6 3 6.4E-05 42.2 28.9 205 30-269 85-292 (892)
211 PF06025 DUF913: Domain of Unk 95.6 0.47 1E-05 45.4 14.5 135 63-198 95-242 (379)
212 PF14668 RICTOR_V: Rapamycin-i 95.5 0.14 3.1E-06 35.5 7.9 66 302-370 4-70 (73)
213 PF13764 E3_UbLigase_R4: E3 ub 95.5 2.8 6.1E-05 44.0 20.6 239 200-455 117-408 (802)
214 PF12530 DUF3730: Protein of u 95.5 1.7 3.8E-05 38.6 17.0 141 75-230 2-152 (234)
215 KOG2999 Regulator of Rac1, req 95.4 0.69 1.5E-05 45.0 14.5 157 31-191 84-245 (713)
216 PF14500 MMS19_N: Dos2-interac 95.4 1.8 4E-05 39.1 16.7 225 35-274 4-240 (262)
217 PF11864 DUF3384: Domain of un 95.4 3.3 7.1E-05 41.2 27.3 291 44-356 4-330 (464)
218 KOG1525 Sister chromatid cohes 95.4 5.6 0.00012 44.0 22.8 147 284-453 259-405 (1266)
219 PF11865 DUF3385: Domain of un 95.3 0.22 4.8E-06 41.2 9.8 147 73-228 10-156 (160)
220 KOG1993 Nuclear transport rece 95.1 4.6 9.9E-05 41.5 23.1 343 44-400 501-865 (978)
221 PF11707 Npa1: Ribosome 60S bi 95.1 3 6.4E-05 39.3 20.4 159 286-453 58-237 (330)
222 KOG3665 ZYG-1-like serine/thre 95.1 3 6.5E-05 43.5 19.3 193 139-350 494-691 (699)
223 KOG1566 Conserved protein Mo25 95.1 2.6 5.5E-05 38.3 17.5 207 236-454 73-287 (342)
224 KOG2611 Neurochondrin/leucine- 95.1 2.1 4.6E-05 41.1 16.3 134 77-213 15-165 (698)
225 PF01603 B56: Protein phosphat 95.1 0.82 1.8E-05 44.4 14.5 237 21-277 129-376 (409)
226 COG5218 YCG1 Chromosome conden 95.1 1.9 4.1E-05 42.5 16.3 110 195-310 86-195 (885)
227 PF07814 WAPL: Wings apart-lik 95.0 1.6 3.4E-05 41.7 16.0 275 118-402 23-358 (361)
228 KOG3665 ZYG-1-like serine/thre 95.0 4.3 9.3E-05 42.4 20.1 175 265-452 494-696 (699)
229 KOG0413 Uncharacterized conser 95.0 5.7 0.00012 41.8 23.4 132 299-457 945-1077(1529)
230 PF14668 RICTOR_V: Rapamycin-i 94.9 0.18 3.9E-06 35.1 6.9 67 259-327 4-70 (73)
231 KOG1949 Uncharacterized conser 94.8 0.92 2E-05 45.5 13.8 231 155-397 126-368 (1005)
232 PF01347 Vitellogenin_N: Lipop 94.6 0.9 1.9E-05 47.2 14.6 198 74-306 396-614 (618)
233 PLN03076 ARF guanine nucleotid 94.5 8.5 0.00018 44.5 22.2 265 40-314 1147-1489(1780)
234 KOG2611 Neurochondrin/leucine- 94.5 4.8 0.0001 38.8 18.1 132 32-167 13-161 (698)
235 PF08506 Cse1: Cse1; InterPro 94.4 3.3 7.1E-05 39.6 16.4 147 238-394 206-370 (370)
236 PF13251 DUF4042: Domain of un 94.4 1.2 2.5E-05 37.6 11.8 142 90-231 2-176 (182)
237 PF08506 Cse1: Cse1; InterPro 94.3 0.62 1.3E-05 44.4 11.5 148 153-309 205-370 (370)
238 PF13251 DUF4042: Domain of un 94.3 1.1 2.5E-05 37.7 11.7 144 258-402 2-177 (182)
239 PF11707 Npa1: Ribosome 60S bi 94.2 5.1 0.00011 37.8 21.9 157 244-400 58-238 (330)
240 PF12530 DUF3730: Protein of u 94.2 3.9 8.4E-05 36.3 17.1 138 161-314 3-151 (234)
241 PF04063 DUF383: Domain of unk 94.0 0.53 1.1E-05 40.1 9.3 125 211-339 6-159 (192)
242 KOG2137 Protein kinase [Signal 94.0 1.6 3.5E-05 44.1 13.6 171 30-213 349-521 (700)
243 KOG2038 CAATT-binding transcri 93.9 4 8.6E-05 41.7 16.1 117 1-144 290-408 (988)
244 PF06371 Drf_GBD: Diaphanous G 93.9 1 2.2E-05 38.5 11.2 110 74-187 67-186 (187)
245 KOG2137 Protein kinase [Signal 93.9 4.7 0.0001 40.9 16.7 175 197-383 346-521 (700)
246 KOG2999 Regulator of Rac1, req 93.9 1.9 4E-05 42.2 13.3 157 118-275 85-246 (713)
247 KOG1993 Nuclear transport rece 93.8 9.2 0.0002 39.4 19.4 319 33-363 529-871 (978)
248 KOG1525 Sister chromatid cohes 93.7 3.9 8.5E-05 45.1 17.1 148 242-400 259-406 (1266)
249 PF10363 DUF2435: Protein of u 93.7 0.29 6.4E-06 36.0 6.3 85 30-126 3-87 (92)
250 COG5209 RCD1 Uncharacterized p 93.4 0.78 1.7E-05 39.2 9.0 99 304-403 119-222 (315)
251 PF03378 CAS_CSE1: CAS/CSE pro 93.3 5.3 0.00012 39.1 16.1 277 74-358 27-326 (435)
252 PF03378 CAS_CSE1: CAS/CSE pro 93.2 6.6 0.00014 38.5 16.4 263 128-401 42-326 (435)
253 PF12830 Nipped-B_C: Sister ch 93.1 3.3 7.2E-05 35.3 12.9 146 31-189 9-168 (187)
254 PLN03076 ARF guanine nucleotid 93.0 11 0.00023 43.8 19.6 267 127-401 1148-1491(1780)
255 KOG2933 Uncharacterized conser 93.0 0.47 1E-05 42.7 7.6 142 244-400 90-235 (334)
256 KOG1992 Nuclear export recepto 92.9 13 0.00028 38.6 20.4 295 88-402 307-671 (960)
257 KOG2933 Uncharacterized conser 92.9 0.95 2.1E-05 40.8 9.3 145 199-356 87-234 (334)
258 PF11865 DUF3385: Domain of un 92.9 1.2 2.5E-05 36.9 9.4 146 199-355 9-156 (160)
259 PF04063 DUF383: Domain of unk 92.8 0.64 1.4E-05 39.6 7.9 77 73-150 52-137 (192)
260 PF10363 DUF2435: Protein of u 92.7 0.47 1E-05 34.9 6.1 77 286-365 5-81 (92)
261 KOG0891 DNA-dependent protein 92.7 2 4.2E-05 50.4 13.6 268 39-315 490-764 (2341)
262 PF08167 RIX1: rRNA processing 92.7 0.87 1.9E-05 37.9 8.5 115 242-358 25-145 (165)
263 cd03568 VHS_STAM VHS domain fa 92.5 0.65 1.4E-05 37.5 7.2 76 371-457 38-114 (144)
264 PF08324 PUL: PUL domain; Int 92.3 2.1 4.5E-05 39.0 11.3 157 75-234 65-236 (268)
265 smart00638 LPD_N Lipoprotein N 92.3 5.8 0.00013 40.8 15.7 160 117-305 394-569 (574)
266 COG5218 YCG1 Chromosome conden 92.3 13 0.00029 37.0 17.7 106 30-146 91-197 (885)
267 PF12726 SEN1_N: SEN1 N termin 92.2 18 0.00039 38.5 25.2 118 328-459 442-559 (727)
268 cd03572 ENTH_epsin_related ENT 92.2 2.8 6.1E-05 32.6 10.0 97 342-455 16-121 (122)
269 PF13001 Ecm29: Proteasome sta 92.1 14 0.00031 37.1 23.8 160 285-456 320-491 (501)
270 cd03569 VHS_Hrs_Vps27p VHS dom 92.0 0.89 1.9E-05 36.7 7.5 77 371-458 42-119 (142)
271 KOG1788 Uncharacterized conser 91.9 20 0.00043 38.5 18.1 59 124-183 475-533 (2799)
272 cd03568 VHS_STAM VHS domain fa 91.9 0.66 1.4E-05 37.5 6.6 74 30-103 37-110 (144)
273 cd03569 VHS_Hrs_Vps27p VHS dom 91.8 0.66 1.4E-05 37.4 6.5 74 30-103 41-114 (142)
274 PF14225 MOR2-PAG1_C: Cell mor 91.8 9.6 0.00021 34.4 17.4 176 73-270 64-253 (262)
275 PF12231 Rif1_N: Rap1-interact 91.6 13 0.00029 35.7 19.2 307 40-356 3-352 (372)
276 cd03567 VHS_GGA VHS domain fam 91.5 0.97 2.1E-05 36.2 7.0 72 328-399 39-116 (139)
277 PF01347 Vitellogenin_N: Lipop 91.2 2.3 5E-05 44.2 11.6 167 200-394 395-584 (618)
278 smart00288 VHS Domain present 90.7 1 2.2E-05 35.9 6.5 74 30-103 37-111 (133)
279 COG5209 RCD1 Uncharacterized p 90.5 2 4.2E-05 36.9 8.1 146 42-189 111-269 (315)
280 PF08167 RIX1: rRNA processing 90.5 6.2 0.00013 32.8 11.3 113 73-191 25-146 (165)
281 KOG1822 Uncharacterized conser 90.1 41 0.0009 38.7 22.1 273 118-398 878-1188(2067)
282 PF04388 Hamartin: Hamartin pr 90.0 8.2 0.00018 40.2 13.9 158 30-209 4-161 (668)
283 cd03561 VHS VHS domain family; 89.9 1.9 4E-05 34.4 7.5 74 30-103 37-112 (133)
284 PF14726 RTTN_N: Rotatin, an a 89.7 3.1 6.6E-05 31.0 7.7 70 368-450 28-97 (98)
285 cd03567 VHS_GGA VHS domain fam 89.7 2.5 5.3E-05 33.9 7.9 75 371-456 39-119 (139)
286 KOG1832 HIV-1 Vpr-binding prot 89.2 22 0.00048 37.4 15.5 175 277-465 594-836 (1516)
287 smart00288 VHS Domain present 89.1 2.1 4.6E-05 34.1 7.2 77 371-458 38-116 (133)
288 COG5098 Chromosome condensatio 88.9 30 0.00064 35.4 23.4 113 286-402 301-418 (1128)
289 cd03561 VHS VHS domain family; 88.6 4 8.8E-05 32.5 8.6 74 328-401 38-114 (133)
290 KOG1992 Nuclear export recepto 88.3 35 0.00077 35.6 26.5 399 34-457 41-531 (960)
291 cd03572 ENTH_epsin_related ENT 88.0 5.3 0.00012 31.1 8.4 88 307-399 23-119 (122)
292 PF10521 DUF2454: Protein of u 87.8 6.3 0.00014 36.2 10.4 140 73-213 119-278 (282)
293 KOG2229 Protein required for a 87.2 3.5 7.6E-05 39.9 8.3 143 284-448 16-161 (616)
294 smart00638 LPD_N Lipoprotein N 87.2 34 0.00074 35.2 16.5 135 200-354 393-543 (574)
295 PF13001 Ecm29: Proteasome sta 87.0 12 0.00025 37.7 12.5 219 170-402 248-491 (501)
296 PF12074 DUF3554: Domain of un 87.0 5.1 0.00011 38.0 9.7 209 71-295 20-255 (339)
297 cd03565 VHS_Tom1 VHS domain fa 86.4 15 0.00032 29.6 10.5 76 371-457 39-119 (141)
298 PF14225 MOR2-PAG1_C: Cell mor 86.3 25 0.00055 31.8 16.5 165 130-314 76-254 (262)
299 PF12031 DUF3518: Domain of un 86.3 2.7 5.9E-05 36.6 6.5 79 89-168 139-226 (257)
300 PF12830 Nipped-B_C: Sister ch 86.2 20 0.00043 30.5 13.1 71 74-150 9-79 (187)
301 KOG1822 Uncharacterized conser 86.1 73 0.0016 36.9 21.5 235 70-313 873-1126(2067)
302 PF14726 RTTN_N: Rotatin, an a 86.0 8.9 0.00019 28.5 8.3 93 45-140 2-95 (98)
303 PF12031 DUF3518: Domain of un 85.6 4 8.6E-05 35.7 7.2 84 257-341 139-230 (257)
304 PF12231 Rif1_N: Rap1-interact 85.4 36 0.00078 32.7 23.2 220 172-400 59-304 (372)
305 KOG1410 Nuclear transport rece 85.0 48 0.001 33.9 20.3 289 31-336 6-354 (1082)
306 PF00790 VHS: VHS domain; Int 85.0 3 6.5E-05 33.6 6.1 76 371-457 43-122 (140)
307 KOG2005 26S proteasome regulat 84.9 49 0.0011 33.8 16.5 288 31-360 416-708 (878)
308 PF04869 Uso1_p115_head: Uso1 84.8 19 0.0004 33.5 11.8 146 255-402 51-234 (312)
309 KOG4464 Signaling protein RIC- 84.1 40 0.00086 32.2 16.8 156 75-231 47-233 (532)
310 PF12726 SEN1_N: SEN1 N termin 83.9 29 0.00062 36.9 14.3 143 246-402 445-588 (727)
311 PF10274 ParcG: Parkin co-regu 83.8 14 0.00029 31.2 9.4 75 30-106 38-112 (183)
312 PF10521 DUF2454: Protein of u 83.7 12 0.00027 34.3 10.2 138 242-381 119-276 (282)
313 PF12463 DUF3689: Protein of u 83.7 36 0.00079 31.4 13.4 79 326-404 94-178 (303)
314 KOG0392 SNF2 family DNA-depend 83.5 14 0.0003 40.3 11.2 236 30-274 77-328 (1549)
315 KOG4464 Signaling protein RIC- 83.3 43 0.00093 32.0 20.0 154 162-315 49-232 (532)
316 KOG0891 DNA-dependent protein 83.3 30 0.00065 41.3 14.7 252 133-400 461-720 (2341)
317 KOG1988 Uncharacterized conser 83.3 65 0.0014 34.0 16.1 251 33-314 27-281 (970)
318 PF00790 VHS: VHS domain; Int 83.1 1.5 3.3E-05 35.3 3.6 74 30-103 42-118 (140)
319 KOG0413 Uncharacterized conser 82.4 75 0.0016 34.1 20.4 130 88-231 945-1075(1529)
320 KOG2199 Signal transducing ada 82.0 16 0.00035 34.3 9.8 72 328-399 46-118 (462)
321 KOG0889 Histone acetyltransfer 81.2 85 0.0018 38.9 17.1 306 73-382 984-1331(3550)
322 cd00197 VHS_ENTH_ANTH VHS, ENT 80.9 12 0.00026 28.8 7.8 71 371-452 38-114 (115)
323 KOG1848 Uncharacterized conser 80.3 1.1E+02 0.0023 34.5 17.8 270 172-459 855-1138(1610)
324 PF08767 CRM1_C: CRM1 C termin 80.2 52 0.0011 30.8 13.5 182 257-454 42-245 (319)
325 KOG1848 Uncharacterized conser 79.5 92 0.002 34.9 15.5 98 126-228 852-957 (1610)
326 PF11229 DUF3028: Protein of u 78.8 71 0.0015 31.6 15.7 228 159-397 98-351 (589)
327 PF08324 PUL: PUL domain; Int 78.8 5.6 0.00012 36.2 6.2 109 212-321 122-238 (268)
328 PF06685 DUF1186: Protein of u 78.3 50 0.0011 29.5 13.8 123 17-166 18-161 (249)
329 KOG2213 Apoptosis inhibitor 5/ 78.3 63 0.0014 30.7 17.6 131 129-271 37-180 (460)
330 KOG2199 Signal transducing ada 78.2 6.1 0.00013 37.0 5.9 78 370-458 45-123 (462)
331 PF10274 ParcG: Parkin co-regu 78.1 41 0.00088 28.4 11.0 74 242-317 38-112 (183)
332 KOG1788 Uncharacterized conser 78.0 1.1E+02 0.0024 33.4 20.8 238 39-295 476-731 (2799)
333 PLN03205 ATR interacting prote 77.5 67 0.0015 30.5 12.3 162 197-359 320-519 (652)
334 PF14631 FancD2: Fanconi anaem 77.1 1E+02 0.0023 35.4 16.2 108 242-356 431-542 (1426)
335 PF11791 Aconitase_B_N: Aconit 74.9 24 0.00052 28.5 7.7 100 202-314 24-123 (154)
336 PF12074 DUF3554: Domain of un 74.8 78 0.0017 30.0 17.1 213 133-359 4-238 (339)
337 cd03565 VHS_Tom1 VHS domain fa 73.4 34 0.00074 27.5 8.6 72 328-399 39-115 (141)
338 KOG0392 SNF2 family DNA-depend 73.1 58 0.0013 36.0 12.1 244 199-459 76-331 (1549)
339 KOG0301 Phospholipase A2-activ 72.8 97 0.0021 31.7 12.8 140 45-190 559-706 (745)
340 cd00197 VHS_ENTH_ANTH VHS, ENT 72.8 19 0.00042 27.7 6.9 73 30-102 37-114 (115)
341 PF04499 SAPS: SIT4 phosphatas 70.4 38 0.00082 33.7 9.8 115 283-401 20-150 (475)
342 smart00509 TFS2N Domain in the 70.1 22 0.00047 25.0 6.0 51 388-451 19-69 (75)
343 PF04064 DUF384: Domain of unk 69.9 29 0.00062 22.9 6.0 44 416-459 11-55 (58)
344 PF08389 Xpo1: Exportin 1-like 69.6 29 0.00063 27.8 7.8 141 89-266 3-148 (148)
345 KOG1832 HIV-1 Vpr-binding prot 69.6 33 0.00071 36.2 9.1 159 64-232 592-776 (1516)
346 cd08050 TAF6 TATA Binding Prot 69.3 48 0.001 31.4 9.9 112 199-312 209-338 (343)
347 KOG0301 Phospholipase A2-activ 69.2 1.4E+02 0.0031 30.6 16.0 161 88-253 558-727 (745)
348 cd08050 TAF6 TATA Binding Prot 68.2 92 0.002 29.6 11.6 110 159-269 211-338 (343)
349 KOG2011 Sister chromatid cohes 68.1 1.1E+02 0.0023 33.6 12.8 143 294-458 297-441 (1048)
350 PF04388 Hamartin: Hamartin pr 67.9 79 0.0017 33.1 11.9 61 255-315 81-141 (668)
351 PF09324 DUF1981: Domain of un 67.8 11 0.00025 27.2 4.3 66 156-225 15-84 (86)
352 PF08389 Xpo1: Exportin 1-like 67.6 25 0.00055 28.2 7.0 125 175-309 4-148 (148)
353 PF12783 Sec7_N: Guanine nucle 67.4 55 0.0012 27.2 9.0 109 43-155 35-156 (168)
354 PF04821 TIMELESS: Timeless pr 67.0 68 0.0015 29.2 10.1 73 383-455 133-210 (266)
355 PF08711 Med26: TFIIS helical 66.2 17 0.00036 23.4 4.4 35 417-451 13-48 (53)
356 KOG2149 Uncharacterized conser 65.8 59 0.0013 31.0 9.4 114 285-401 59-172 (393)
357 cd00183 TFIIS_I N-terminal dom 64.3 34 0.00073 24.1 6.0 35 417-451 37-71 (76)
358 PF06685 DUF1186: Protein of u 63.8 1.1E+02 0.0024 27.4 15.2 101 115-227 72-181 (249)
359 PF12054 DUF3535: Domain of un 63.4 1.1E+02 0.0025 30.1 11.6 79 44-127 101-179 (441)
360 KOG2085 Serine/threonine prote 63.0 1.5E+02 0.0032 28.6 11.4 60 87-146 146-207 (457)
361 smart00802 UME Domain in UVSB 62.9 46 0.00099 25.3 6.8 80 284-368 11-95 (107)
362 PF04869 Uso1_p115_head: Uso1 62.5 1.4E+02 0.0029 28.0 14.1 157 200-356 34-231 (312)
363 PF01417 ENTH: ENTH domain; I 61.7 75 0.0016 24.8 8.3 100 337-454 13-122 (125)
364 KOG2073 SAP family cell cycle 61.7 2.3E+02 0.0051 30.4 15.3 178 199-383 189-378 (838)
365 PF08064 UME: UME (NUC010) dom 61.6 49 0.0011 25.1 6.9 80 284-368 11-95 (107)
366 KOG0889 Histone acetyltransfer 61.2 3.8E+02 0.0082 33.9 16.3 289 31-326 985-1318(3550)
367 PF09758 FPL: Uncharacterised 61.1 5.4 0.00012 32.2 1.7 125 273-397 15-147 (149)
368 KOG1851 Uncharacterized conser 60.7 3.1E+02 0.0068 31.6 16.3 153 286-457 1528-1682(1710)
369 KOG1087 Cytosolic sorting prot 60.7 49 0.0011 32.7 8.3 68 328-395 39-108 (470)
370 PF04499 SAPS: SIT4 phosphatas 60.1 1.9E+02 0.0041 28.9 13.1 76 359-434 51-128 (475)
371 PF09758 FPL: Uncharacterised 58.7 60 0.0013 26.3 7.1 123 105-227 15-147 (149)
372 KOG2149 Uncharacterized conser 58.4 89 0.0019 29.8 9.2 120 243-365 59-179 (393)
373 KOG2140 Uncharacterized conser 58.0 1.2E+02 0.0026 30.1 10.1 63 327-395 238-300 (739)
374 PF08713 DNA_alkylation: DNA a 56.2 1.3E+02 0.0029 25.9 11.2 141 76-241 54-196 (213)
375 KOG2022 Nuclear transport rece 55.2 2.9E+02 0.0064 29.6 15.1 135 215-360 482-623 (982)
376 PRK14051 negative regulator Gr 54.8 6.1 0.00013 29.2 0.9 26 459-487 59-86 (123)
377 PF09324 DUF1981: Domain of un 54.6 39 0.00084 24.5 5.1 67 281-352 14-84 (86)
378 PF08216 CTNNBL: Catenin-beta- 54.5 16 0.00034 27.6 3.1 42 92-134 64-105 (108)
379 PF12783 Sec7_N: Guanine nucle 54.3 1.3E+02 0.0027 25.0 9.7 79 236-315 67-147 (168)
380 KOG1087 Cytosolic sorting prot 54.3 51 0.0011 32.5 7.3 73 371-454 39-113 (470)
381 PF08713 DNA_alkylation: DNA a 53.6 16 0.00035 31.8 3.6 77 30-115 120-196 (213)
382 PLN03205 ATR interacting prote 53.3 2.1E+02 0.0046 27.4 10.8 111 32-143 325-444 (652)
383 KOG2676 Uncharacterized conser 53.3 18 0.00039 33.6 3.7 63 94-156 376-440 (478)
384 KOG2011 Sister chromatid cohes 52.5 1.7E+02 0.0036 32.2 11.0 136 83-227 297-433 (1048)
385 smart00567 EZ_HEAT E-Z type HE 52.3 26 0.00057 19.1 3.1 13 300-312 2-14 (30)
386 PF06012 DUF908: Domain of Unk 51.5 71 0.0015 30.1 7.7 76 47-124 239-324 (329)
387 KOG1410 Nuclear transport rece 51.3 3E+02 0.0066 28.6 20.4 231 160-402 7-287 (1082)
388 KOG2549 Transcription initiati 50.6 2.8E+02 0.006 27.9 12.9 140 120-270 211-369 (576)
389 KOG0803 Predicted E3 ubiquitin 50.5 4.4E+02 0.0095 30.2 16.7 199 31-233 42-267 (1312)
390 PF04821 TIMELESS: Timeless pr 50.5 2E+02 0.0043 26.2 15.8 62 28-103 11-72 (266)
391 PF03130 HEAT_PBS: PBS lyase H 48.8 20 0.00044 19.2 2.2 14 301-314 1-14 (27)
392 PF08216 CTNNBL: Catenin-beta- 48.7 22 0.00047 26.9 3.0 43 345-389 64-106 (108)
393 KOG2549 Transcription initiati 48.7 3E+02 0.0065 27.7 11.4 143 33-188 210-370 (576)
394 KOG2005 26S proteasome regulat 47.7 3.4E+02 0.0074 28.1 15.8 79 198-277 46-131 (878)
395 KOG1924 RhoA GTPase effector D 47.0 3.8E+02 0.0082 28.4 13.1 142 300-448 207-359 (1102)
396 PF06012 DUF908: Domain of Unk 46.9 96 0.0021 29.3 7.8 64 90-154 238-306 (329)
397 KOG2073 SAP family cell cycle 46.4 4.1E+02 0.0089 28.7 13.6 41 149-189 181-221 (838)
398 PF11791 Aconitase_B_N: Aconit 46.1 76 0.0017 25.7 5.8 48 90-148 79-126 (154)
399 COG5537 IRR1 Cohesin [Cell div 45.9 3.3E+02 0.0072 27.8 11.1 134 128-271 287-422 (740)
400 PF12765 Cohesin_HEAT: HEAT re 45.6 13 0.00027 22.7 1.1 25 242-266 18-42 (42)
401 PF12463 DUF3689: Protein of u 44.3 2.7E+02 0.0058 25.9 12.4 78 199-276 94-178 (303)
402 KOG4524 Uncharacterized conser 44.1 84 0.0018 33.7 7.3 94 284-380 803-899 (1014)
403 KOG2213 Apoptosis inhibitor 5/ 43.7 3E+02 0.0066 26.4 11.7 54 256-315 38-91 (460)
404 PF08767 CRM1_C: CRM1 C termin 42.8 2.9E+02 0.0063 25.9 15.4 185 215-402 42-247 (319)
405 PF14666 RICTOR_M: Rapamycin-i 42.2 2.4E+02 0.0053 24.9 12.6 129 88-228 78-224 (226)
406 KOG4524 Uncharacterized conser 42.1 1E+02 0.0022 33.1 7.5 97 198-295 801-900 (1014)
407 PRK13867 type IV secretion sys 41.1 13 0.00028 23.8 0.7 23 461-486 14-38 (65)
408 KOG2038 CAATT-binding transcri 40.5 4.7E+02 0.01 27.7 22.2 149 30-189 230-410 (988)
409 KOG1988 Uncharacterized conser 37.2 5.6E+02 0.012 27.6 15.2 166 175-358 40-208 (970)
410 COG5095 TAF6 Transcription ini 37.1 2.3E+02 0.0049 26.1 7.9 131 88-229 212-359 (450)
411 PF12397 U3snoRNP10: U3 small 37.1 2E+02 0.0042 22.3 8.6 66 30-103 6-74 (121)
412 PF11894 DUF3414: Protein of u 36.8 8.2E+02 0.018 29.4 16.4 59 90-148 580-642 (1691)
413 PF14663 RasGEF_N_2: Rapamycin 36.4 66 0.0014 24.8 4.1 39 74-114 9-47 (115)
414 KOG2085 Serine/threonine prote 36.3 4.1E+02 0.0089 25.8 12.3 61 65-127 169-229 (457)
415 PF01365 RYDR_ITPR: RIH domain 35.9 93 0.002 26.9 5.6 114 110-229 37-169 (207)
416 PF13925 Katanin_con80: con80 33.9 2.7E+02 0.0059 23.0 8.0 73 157-230 27-99 (164)
417 COG5537 IRR1 Cohesin [Cell div 33.7 5.4E+02 0.012 26.4 12.5 105 79-189 281-387 (740)
418 PF01365 RYDR_ITPR: RIH domain 33.6 1.6E+02 0.0034 25.5 6.6 97 300-402 76-172 (207)
419 PF05953 Allatostatin: Allatos 33.6 25 0.00054 14.6 0.8 6 483-488 4-9 (11)
420 PF12397 U3snoRNP10: U3 small 33.3 2.3E+02 0.0049 21.9 9.2 68 74-147 7-76 (121)
421 KOG0803 Predicted E3 ubiquitin 32.5 8.3E+02 0.018 28.2 14.7 111 244-356 43-153 (1312)
422 PF07539 DRIM: Down-regulated 31.5 2.5E+02 0.0055 22.6 6.8 84 114-210 15-98 (141)
423 PF14631 FancD2: Fanconi anaem 31.2 1.9E+02 0.0041 33.5 8.1 128 169-303 445-572 (1426)
424 KOG2676 Uncharacterized conser 30.4 66 0.0014 30.1 3.7 62 262-324 376-439 (478)
425 PF08623 TIP120: TATA-binding 27.8 3.6E+02 0.0078 22.5 7.5 95 42-143 39-145 (169)
426 cd03562 CID CID (CTD-Interacti 27.5 2.8E+02 0.006 21.1 6.7 88 171-267 17-104 (114)
427 PF07539 DRIM: Down-regulated 27.2 95 0.0021 25.0 3.8 37 417-453 10-46 (141)
428 PF07923 N1221: N1221-like pro 27.0 81 0.0018 29.1 3.8 55 326-380 59-126 (293)
429 PF08064 UME: UME (NUC010) dom 26.9 2.8E+02 0.0061 21.0 6.3 70 327-402 11-86 (107)
430 smart00802 UME Domain in UVSB 26.7 2.1E+02 0.0046 21.8 5.3 69 73-146 11-84 (107)
431 KOG4231 Intracellular membrane 26.0 1.2E+02 0.0026 30.0 4.7 70 244-314 330-399 (763)
432 PF14666 RICTOR_M: Rapamycin-i 25.5 4.7E+02 0.01 23.1 13.3 130 257-399 79-225 (226)
433 PF07571 DUF1546: Protein of u 25.4 2.8E+02 0.006 20.3 5.9 57 171-227 18-76 (92)
434 cd06561 AlkD_like A new struct 25.0 2.7E+02 0.0058 23.6 6.6 74 245-325 108-181 (197)
435 PF11229 DUF3028: Protein of u 24.7 7.3E+02 0.016 25.0 15.1 194 199-401 96-308 (589)
436 PF08623 TIP120: TATA-binding 24.6 4.2E+02 0.0091 22.2 8.1 76 214-294 41-116 (169)
437 KOG2374 Uncharacterized conser 24.0 7.3E+02 0.016 24.7 10.2 98 335-452 15-124 (661)
438 PF05997 Nop52: Nucleolar prot 23.7 3.8E+02 0.0083 23.4 7.2 68 34-103 4-72 (217)
439 PF11935 DUF3453: Domain of un 23.5 3.5E+02 0.0075 24.1 7.1 73 378-454 1-73 (239)
440 COG4291 Predicted membrane pro 22.8 1.5E+02 0.0032 25.3 4.1 39 443-487 136-174 (228)
441 PF07923 N1221: N1221-like pro 22.5 1.8E+02 0.004 26.8 5.3 54 30-83 60-126 (293)
442 PF15573 Imm27: Immunity prote 22.3 2.2E+02 0.0047 24.8 5.0 76 75-171 48-124 (259)
443 PF10257 RAI16-like: Retinoic 22.1 7E+02 0.015 23.8 12.0 130 236-368 3-169 (353)
444 PRK09169 hypothetical protein; 21.9 1.6E+03 0.034 27.8 27.0 94 30-127 163-258 (2316)
445 PF04064 DUF384: Domain of unk 21.7 2.5E+02 0.0054 18.6 5.0 50 98-148 2-52 (58)
446 PF06367 Drf_FH3: Diaphanous F 21.2 2.6E+02 0.0056 23.8 5.7 77 369-451 20-99 (197)
447 KOG1086 Cytosolic sorting prot 21.1 7.9E+02 0.017 24.0 13.5 30 373-402 176-205 (594)
448 PF04510 DUF577: Family of unk 20.7 5.1E+02 0.011 21.7 11.1 157 285-454 4-165 (174)
449 PF14663 RasGEF_N_2: Rapamycin 20.1 4.1E+02 0.0089 20.4 10.3 103 328-455 9-112 (115)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-62 Score=455.13 Aligned_cols=447 Identities=68% Similarity=1.076 Sum_probs=418.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
...+.++..+.|+++..+..+...++++++.+.++.++.++..|++|.+++.|...+++.++..|+|+|.|+++++.+..
T Consensus 66 ~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 66 SNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence 34778899999999999999999999999999888899999999999999999877669999999999999999999999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+++.|.++.++.++.+++..+++.|.|+|+|++.+++.+|+.+++.|++.+|+.++..+....+.+++.|+|+|+|++
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999996555568999999999999999
Q ss_pred C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 190 ~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
. |.........++|.|..++++.|+.+...++|++++++.+..+.++.+++.|+++.|+.+|.+.++.++..|+++++|
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 8 788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
++.+++.+.+.+++.|+++.+..++...+...+|++|+|+++|++.++.++++.+++.|++|.|+++++..+.++|++|+
T Consensus 306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999998553778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011316 349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 428 (488)
Q Consensus 349 ~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 428 (488)
|+++|++..+++++..+|.+.|++++|+++|.-.|.++...++.++.++++.++....... |++...+++.||+++
T Consensus 386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~----n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT----NPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc----cHHHHHHHHccChhH
Confidence 9999999999999999999999999999999999999999999999999999887654311 779999999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC-CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011316 429 IENLQSHDNTEIYEKAVKILETYWVEEDEDEP-LPPGDATQAGFGFAGNGLPVPSGGFNF 487 (488)
Q Consensus 429 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (488)
++.|++|.|.+++++|..++++||.+|+|++. .|... +|+|.+++ |+|+|||
T Consensus 462 iE~LQ~hen~~Iy~~A~~II~~yf~~e~~~~~~~~~~~----~~~~~~~~---~~~~f~f 514 (514)
T KOG0166|consen 462 IENLQSHENEEIYKKAYKIIDTYFSEEDDEDDQQPTTS----QFTFQVQA---PDGGFNF 514 (514)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCCCccccccccccc----ccccCCCC---CCCCCCC
Confidence 99999999999999999999999998755443 32222 89988884 9999998
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.5e-60 Score=406.81 Aligned_cols=441 Identities=57% Similarity=0.908 Sum_probs=406.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
.-+|.+.+.|.|+|.+.++.|...++++++.+..++++.+++.|++|.+++++......-.+..|+|+|.|+++++....
T Consensus 71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 45799999999999999999999999999999999999999999999999999554436789999999999999988888
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-cHhHHHHHHHHHHHhhc
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCR 188 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~v~~~a~~~L~~l~~ 188 (488)
..+++.|.+|.++++|.+++.++++.+.|+|+|++.+++.+|+.+++.|++++++.++..+. +.++.+++.|+|+|+|+
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR 230 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR 230 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence 89999999999999999999999999999999999999999999999999999999994332 45889999999999999
Q ss_pred CC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316 189 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 189 ~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
+. |...-......+|.|.+++.+.|+++...|+|+++.++....+.++.+++.|+.+.|+++|.+++..++..|++.++
T Consensus 231 GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG 310 (526)
T COG5064 231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG 310 (526)
T ss_pred CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence 98 66677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011316 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 347 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 347 (488)
|+..+++.+.+.+++.|+++.+..+|.++ ...+|++|||+++|+..++.++++.+++.+++|.|+.+|...+..++++|
T Consensus 311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEA 389 (526)
T COG5064 311 NIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389 (526)
T ss_pred CeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc
Q 011316 348 AWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 425 (488)
Q Consensus 348 ~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 425 (488)
||++.|.++++ .++..++|.++|++++|+++|.-.+.++.+.++.++.++++.++..+.. .....|.|....++.||
T Consensus 390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~-~~~nin~ya~~vE~Agg 468 (526)
T COG5064 390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGG 468 (526)
T ss_pred HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHh-ccCCccHHHHHHHhccc
Confidence 99999999876 5789999999999999999999999999999999999999988766543 23445778888999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC-CCCCCCCCCccccC
Q 011316 426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP-LPPGDATQAGFGFA 474 (488)
Q Consensus 426 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ 474 (488)
++.+..++++.|.+++++|..++++||.+|+.=|| +|+-. -.-|+|.
T Consensus 469 md~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~--g~tftfg 516 (526)
T COG5064 469 MDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETA--GNTFTFG 516 (526)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcCcccc--CCeeecC
Confidence 99999999999999999999999999999887777 44333 2356663
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-43 Score=328.61 Aligned_cols=378 Identities=27% Similarity=0.429 Sum_probs=338.3
Q ss_pred CCCChhhHHHHhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHH
Q 011316 16 KPMDPMFFIIQLQLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA 94 (488)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a 94 (488)
.|++..+.. |.+|.++++|. ..++.++..|+|+|.+++++. .+..+.+++.|.+|.|++++.+++ .+++++|
T Consensus 100 ppi~~vi~~-----G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQa 172 (514)
T KOG0166|consen 100 PPIDEVIQS-----GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQA 172 (514)
T ss_pred CCHHHHHHc-----CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHH
Confidence 455556666 99999999997 466999999999999999987 788899999999999999999999 9999999
Q ss_pred HHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccH
Q 011316 95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 173 (488)
Q Consensus 95 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~ 173 (488)
+|+|+|++.+++.+|+.+++.|+++.|+.++...+. .+.+++.|+|+|+|++.......-.-..+++.|..++ .+.|+
T Consensus 173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~ 251 (514)
T KOG0166|consen 173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDE 251 (514)
T ss_pred HHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCH
Confidence 999999999999999999999999999999988665 7889999999999987632222222335788888998 89999
Q ss_pred hHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC
Q 011316 174 SMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 252 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 252 (488)
.+...|+|++++|+.+. +........|+++.|+++|.+.+..++..|+++++|++.+++.+.+.+++.|+++.|..++.
T Consensus 252 ~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~ 331 (514)
T KOG0166|consen 252 EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLS 331 (514)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhc
Confidence 99999999999999887 55566677899999999999999999999999999999999999999999999999999998
Q ss_pred -CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChH
Q 011316 253 -HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIG 330 (488)
Q Consensus 253 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~ 330 (488)
++...++..|+|+++|++.++.++++.+++.|+++.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+++
T Consensus 332 ~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~ 410 (514)
T KOG0166|consen 332 SSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIK 410 (514)
T ss_pred cCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCch
Confidence 56667999999999999999999999999999999999999999 89999999999999998 6899999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhccCCC-------HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 331 PLVNLLLNAEFEIKKEAAWAISNATSGGS-------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 331 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
.++.+|.-.|.++...++.+|.++...+. ......+-+.|+++.+..+-.+.+.++...|...+.+.+..++
T Consensus 411 plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~ 489 (514)
T KOG0166|consen 411 PLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEED 489 (514)
T ss_pred hhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Confidence 99999988899999999999999986441 3345566788999999999999999999999999988876553
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.5e-43 Score=303.11 Aligned_cols=376 Identities=25% Similarity=0.353 Sum_probs=333.7
Q ss_pred hcCCCCChhhHHHHhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHH
Q 011316 13 SLLKPMDPMFFIIQLQLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91 (488)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~ 91 (488)
....|++.++.. |.+|++++.|. .+..-.+..|+|+|.+++++. ..+.+.+++.|.+|.++++|.+++ .+++
T Consensus 102 E~~PPIq~VIda-----GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~ 174 (526)
T COG5064 102 ETSPPIQPVIDA-----GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVR 174 (526)
T ss_pred ccCCCchhHHhc-----cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHH
Confidence 346788999999 99999999994 577788999999999999987 677788889999999999999999 8999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCCc--hhHHHHHhcCChHHHHHHh
Q 011316 92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQF 167 (488)
Q Consensus 92 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~~l 167 (488)
++++|+|+|++.+++.+|+.+.+.|++++++.++.+. +..+.+++.|+|+|+|++.. .....+. ..++.|.+++
T Consensus 175 eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is--qalpiL~KLi 252 (526)
T COG5064 175 EQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS--QALPILAKLI 252 (526)
T ss_pred HHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH--HHHHHHHHHH
Confidence 9999999999999999999999999999999998874 45889999999999997642 2222222 3678888888
Q ss_pred cccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHH
Q 011316 168 NEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 246 (488)
Q Consensus 168 ~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~ 246 (488)
.+.|+++...|+|++++++.+. +........|..+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.
T Consensus 253 -ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a 331 (526)
T COG5064 253 -YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKA 331 (526)
T ss_pred -hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHH
Confidence 8889999999999999999987 45555667899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC---CHHHHHHH
Q 011316 247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAI 323 (488)
Q Consensus 247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l 323 (488)
+..+|.++...+|..|||+++|++.++.++.+.+++.+++|.|+++|.+. +..+|++|||+++|..++ .++.++.+
T Consensus 332 ~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryL 410 (526)
T COG5064 332 FRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYL 410 (526)
T ss_pred HHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999999999999983 57889999
Q ss_pred HHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC---------H-HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHH
Q 011316 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS---------N-EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 393 (488)
Q Consensus 324 ~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---------~-~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~ 393 (488)
++.|++..|+.+|.-.+..+.+.++.++.|+...+. . ....++-+.|+++.+..+-++.+..+...|..+
T Consensus 411 v~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsI 490 (526)
T COG5064 411 VSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSI 490 (526)
T ss_pred HHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHH
Confidence 999999999999999888888888999999986552 2 233444458999999999999999999999888
Q ss_pred HHHHHH
Q 011316 394 LENILK 399 (488)
Q Consensus 394 L~~l~~ 399 (488)
+..++.
T Consensus 491 Ie~fFg 496 (526)
T COG5064 491 IEKFFG 496 (526)
T ss_pred HHHHcc
Confidence 887763
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.3e-37 Score=329.61 Aligned_cols=407 Identities=21% Similarity=0.237 Sum_probs=341.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
|++|.+++.|+++++..+..|+++|.+++... .+....+++.|++|.|+++|.+++++.+|+.|+|+|.+++.++++.+
T Consensus 189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r 267 (2102)
T PLN03200 189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK 267 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999998887764 46788899999999999999876547999999999999999999999
Q ss_pred HHHHhCCCHHHHHHhhCCCC---------HHHHHHHHHHHhhhhCCCch-----------hHH---HHHhcCChHHHHHH
Q 011316 110 RVVIDHGAVPIFVRLLSSPT---------DDVREQAVWALGNVAGDSPK-----------CRD---LVLSNGALMPLLAQ 166 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~---------~~~~~~a~~~L~~l~~~~~~-----------~~~---~~~~~~~i~~l~~~ 166 (488)
..+++.|+++.|++++.+++ ..++++|+|+|+|+|.+.+. .+. .....|++.+++..
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 99999999999999998644 45699999999999987433 111 11334667777766
Q ss_pred hcccccHhHH----HHHHHHHHHhhcCC-CCCCh-------------------hhhhchHHHHHHhhccCChhHHHHHHH
Q 011316 167 FNEHAKLSML----RNATWTLSNFCRGK-PQPLF-------------------EQTRPALPALERLIHSNDDEVLTDACW 222 (488)
Q Consensus 167 l~~~~~~~v~----~~a~~~L~~l~~~~-~~~~~-------------------~~~~~~~~~L~~ll~~~~~~v~~~al~ 222 (488)
+ +.++...+ ..++|+|.+++++. +.... ....++++.|+.++...+.+++..+++
T Consensus 348 ~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 348 F-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred c-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence 6 33333333 25678888888876 22211 122466788899999999999999999
Q ss_pred HHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHH
Q 011316 223 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 302 (488)
Q Consensus 223 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~ 302 (488)
+|.+++.++.+..+.+.+.|+++.|+++|.++++.++..+++++++++.+++..+..+.+.|+++.|+++|.++ +..++
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iq 505 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAK 505 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHH
Confidence 99999999888889999999999999999999999999999999999998888888999999999999999999 99999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011316 303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 382 (488)
Q Consensus 303 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~ 382 (488)
++|+|+|+|++.++++.+..+.+.|+++.|+++|.++++++++.|+++|.+++..++.+. ++.++.++.++
T Consensus 506 eeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~LLlsd 576 (2102)
T PLN03200 506 EDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTALLLGD 576 (2102)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHHhcCC
Confidence 999999999998755544445578999999999999999999999999999998776553 36677889999
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011316 383 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 383 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
++.++..++.++.+++........ ........|+++.|.+++.++++++++.|.+++.+|+....+
T Consensus 577 d~~~~~~aL~vLgnIlsl~~~~d~---------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 577 LPESKVHVLDVLGHVLSVASLEDL---------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred ChhHHHHHHHHHHHHHhhcchhHH---------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 999999999999999876554321 122234579999999999999999999999999999986544
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=324.13 Aligned_cols=416 Identities=19% Similarity=0.197 Sum_probs=367.9
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.+.++.|+.+|.+.+.++|..++++|..++.++ .+..+.+.+.|++|.|+++|.+++ +.+|..|++++++++.++++.
T Consensus 403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~nden 480 (2102)
T PLN03200 403 AEAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDES 480 (2102)
T ss_pred ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHH
Confidence 477889999999999999999999999987665 788999999999999999999998 899999999999999988899
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+++.|++|.|+++|++++..+++.|+|+|+|++.+++..+..+.+.|++++|+++| ++.+...+..++|+|.+++.
T Consensus 481 r~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 481 KWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998877777787889999999999 67788999999999999964
Q ss_pred CCCCCC--------------------------------------hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011316 189 GKPQPL--------------------------------------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 230 (488)
Q Consensus 189 ~~~~~~--------------------------------------~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 230 (488)
...... .....++++.|++++++++..+++.|+++|.+++..
T Consensus 560 ~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 560 TADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS 639 (2102)
T ss_pred ccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 331110 001247899999999999999999999999999999
Q ss_pred CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
..+..+.++..|+++.++.+|.+.+.+++..++++|++++.+... ++..+++.|+++.|+++|++. +.+++..|+.+|
T Consensus 640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~AL 718 (2102)
T PLN03200 640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCAL 718 (2102)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHH
Confidence 888888899999999999999999999999999999999975443 445668999999999999998 999999999999
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH--HHHHHHCCChHHHHhhcCCCCHHHH
Q 011316 310 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ--IKFLVSQGCIKPLCDLLNCPDPRIV 387 (488)
Q Consensus 310 ~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~~~~L~~ll~~~~~~v~ 387 (488)
.|++.. ++....+.+.|+++.|++++++++++.|++|+++|.+++...+.+. ..++...|.+..|+++|+..|.+..
T Consensus 719 anLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~ 797 (2102)
T PLN03200 719 ANLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSS 797 (2102)
T ss_pred HHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchh
Confidence 999987 4566777888999999999999999999999999999998876544 3666788999999999999888776
Q ss_pred HH--HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316 388 TV--CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 388 ~~--al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
.. ++++|..+.+....... ..++|...++..++++.|...+.+.+|.++++|..+|+++..+
T Consensus 798 ~~~~al~~l~~l~~~~~~~~~-----~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~ 861 (2102)
T PLN03200 798 ATSEALEALALLARTKGGANF-----SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRD 861 (2102)
T ss_pred hHHHHHHHHHHHHhhcccCCC-----CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhcc
Confidence 65 99999999886554432 3467899999999999998888999999999999999999875
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.6e-30 Score=225.60 Aligned_cols=364 Identities=21% Similarity=0.277 Sum_probs=318.3
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316 27 LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 106 (488)
Q Consensus 27 ~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~ 106 (488)
.++.++..|+..+.++.-++|..+..++.+++.. .+....+...|++..+.++-++.+ ..+|..+..+|.++.. ..
T Consensus 123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~ 198 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SR 198 (550)
T ss_pred EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hh
Confidence 3468899999999999999999999999998876 366777889999999999878888 8999999999999998 88
Q ss_pred hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC--ChHHHHHHhcccccHhHHHHHHHHHH
Q 011316 107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEHAKLSMLRNATWTLS 184 (488)
Q Consensus 107 ~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~v~~~a~~~L~ 184 (488)
++|+.++..|++|.|+.++++.+.+++..|..++++++.+.. .|+.+.+.+ .++.|+.++ +++++.++..|..+|.
T Consensus 199 EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALr 276 (550)
T KOG4224|consen 199 ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALR 276 (550)
T ss_pred hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987654 577788877 899999999 8889999999999999
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC-cchHhHHH
Q 011316 185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPAL 263 (488)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~ 263 (488)
+++.+..........|.+|.++++++++..+.......|+.|++-+.-+. ..+++.|++..|+.+|...+ ++++..|.
T Consensus 277 nlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAv 355 (550)
T KOG4224|consen 277 NLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAV 355 (550)
T ss_pred hhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHH
Confidence 99998877777778999999999999998888889999999999776544 55888999999999998865 55999999
Q ss_pred HHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhH
Q 011316 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 343 (488)
Q Consensus 264 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v 343 (488)
.+|.+++..++..+..+++.|.++.+..++.+. .-.++.+...++..++.. +..+..+.+.|++|.|+.++.+.+.++
T Consensus 356 stLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev 433 (550)
T KOG4224|consen 356 STLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEV 433 (550)
T ss_pred HHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhh
Confidence 999999998888889999999999999999998 888999999999999875 455678899999999999999999999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHH------CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 344 KKEAAWAISNATSGGSNEQIKFLVS------QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~------~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
+.+|+.+|.|+++.- +....+++ .|.-..|.+.+.+.+..++..+.|.+..++...
T Consensus 434 ~gNaAaAL~Nlss~v--~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 434 RGNAAAALINLSSDV--EHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred cccHHHHHHhhhhhh--HHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 999999999998743 55555554 355667777788777777777888777776543
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.3e-30 Score=227.42 Aligned_cols=365 Identities=23% Similarity=0.255 Sum_probs=319.9
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316 27 LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 106 (488)
Q Consensus 27 ~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~ 106 (488)
.+.+.+.++...+++.++.++..+..++.+++-+. +..-.+++.+++..|+.-+.++. .++|..+..|+.+++. ..
T Consensus 82 Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~--enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d 157 (550)
T KOG4224|consen 82 VSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNM--ENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FD 157 (550)
T ss_pred hhhhhhhHHHHHHhCcchhhhhhhhhhhccceecc--CCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cc
Confidence 34467888999999999999999999999987653 44555667788888887777777 6999999999999999 58
Q ss_pred hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316 107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 107 ~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l 186 (488)
+++..+...|++.++.++-++.+..++.++..+|.|+.. +.+.|+.++..|+++.|+.++ +.+|.+++..++.+++++
T Consensus 158 ~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnI 235 (550)
T KOG4224|consen 158 SNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNI 235 (550)
T ss_pred cchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhh
Confidence 889999999999999998888999999999999999974 455788999999999999999 899999999999999999
Q ss_pred hcCCCCCChhhhh--chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHH
Q 011316 187 CRGKPQPLFEQTR--PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264 (488)
Q Consensus 187 ~~~~~~~~~~~~~--~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 264 (488)
+-........... .++|.|+.++++++++++-.|..+|++++.....+ ..+.+.|.+|.++++++++.-........
T Consensus 236 aVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq-~eiv~ag~lP~lv~Llqs~~~plilasVa 314 (550)
T KOG4224|consen 236 AVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ-REIVEAGSLPLLVELLQSPMGPLILASVA 314 (550)
T ss_pred hhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh-hHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence 9877444554444 49999999999999999999999999999876544 56899999999999999988777888899
Q ss_pred HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
|+.|++-+.- ..-.+.+.|++.+|+.+|+..++++++-.|..+|.|++..+......+.+.|.+|.+..++.++...++
T Consensus 315 CIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvq 393 (550)
T KOG4224|consen 315 CIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQ 393 (550)
T ss_pred HHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHH
Confidence 9999987533 334566889999999999998778899999999999999878889999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
.+...++..++.+. ..+..+.+.|.++.|+.+..+.+.+++..+..+|.|+...-
T Consensus 394 seisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 394 SEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 99999999998765 55788999999999999999999999999999999997643
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.95 E-value=3.7e-25 Score=218.90 Aligned_cols=379 Identities=19% Similarity=0.191 Sum_probs=314.7
Q ss_pred HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011316 44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 123 (488)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 123 (488)
..+...+...|.+++.. ......+.+.|+++.|+++|++++ .++...++.+|.+++- ..+++..+.+.|+++.|.+
T Consensus 263 eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~k 338 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHH
Confidence 34444677889997764 467788889999999999999998 8999999999999999 7889999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 011316 124 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203 (488)
Q Consensus 124 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 203 (488)
++.+++.+++..++++|.|++.+.. .|..+++.|.++.++.++. ++..+..++.+|.+++............+++|
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp 414 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIP 414 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHH
Confidence 9999999999999999999997765 6999999999999999993 34566779999999999886666666778999
Q ss_pred HHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh
Q 011316 204 ALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN 282 (488)
Q Consensus 204 ~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 282 (488)
.+++++.+ ++..+...++..+.|++.+... .+.+.+.++++.|+....+... ...+..+.|++.+.+.....+.
T Consensus 415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~- 489 (708)
T PF05804_consen 415 QLMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV- 489 (708)
T ss_pred HHHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH-
Confidence 99997654 5777778888999999987754 4778888889999888654332 2345789999998754443332
Q ss_pred CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCH
Q 011316 283 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 283 ~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~ 360 (488)
+.+..++.++..+.+++...+++++|+|+...+.+..+.+.+.+++|.|.+.|..+ ++++..+++..++.++. ++
T Consensus 490 -~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~ 566 (708)
T PF05804_consen 490 -DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DP 566 (708)
T ss_pred -HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CH
Confidence 47777888888776889999999999999986555555555789999999999876 56799999999999986 56
Q ss_pred HHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCH
Q 011316 361 EQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 438 (488)
Q Consensus 361 ~~~~~l~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~ 438 (488)
+....+.++|+++.|+++++. .|.+++.+.+.++.+++...+. ...++.+.+....+.+++++.|+
T Consensus 567 ~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t------------r~~ll~~~~~~~ylidL~~d~N~ 634 (708)
T PF05804_consen 567 ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET------------REVLLKETEIPAYLIDLMHDKNA 634 (708)
T ss_pred HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH------------HHHHHhccchHHHHHHHhcCCCH
Confidence 888999999999999999984 5689999999999999988663 24556778999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011316 439 EIYEKAVKILET 450 (488)
Q Consensus 439 ~v~~~a~~~l~~ 450 (488)
+|++.+..++.-
T Consensus 635 ~ir~~~d~~Ldi 646 (708)
T PF05804_consen 635 EIRKVCDNALDI 646 (708)
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=4.7e-23 Score=204.08 Aligned_cols=364 Identities=18% Similarity=0.206 Sum_probs=304.0
Q ss_pred HhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC
Q 011316 26 QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 105 (488)
Q Consensus 26 ~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~ 105 (488)
-...+.++.|++.|.+++.++...++..|.++.-. .++...+.+.|+++.|.+++.+++ .+++..++++|.|++. +
T Consensus 286 M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d 361 (708)
T PF05804_consen 286 MVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-D 361 (708)
T ss_pred HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-C
Confidence 34458999999999999999999999999996543 577899999999999999999998 8999999999999999 8
Q ss_pred chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316 106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 106 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~ 185 (488)
++.|..+++.|++|.|+.+|.+ +..+..++.+|++++.+.. .+..+...++++.+++++..++++.+...+++.+.|
T Consensus 362 ~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iN 438 (708)
T PF05804_consen 362 PELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLIN 438 (708)
T ss_pred HHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHH
Confidence 9999999999999999999976 4566789999999998654 688888889999999998677777888888999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHH
Q 011316 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALR 264 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~ 264 (488)
++.+..+...+...++++.|++..-+.... -.+..++|++.+++.....+. +.+..|+.++.. ++++....+++
T Consensus 439 La~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LG 513 (708)
T PF05804_consen 439 LALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLG 513 (708)
T ss_pred HhcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHH
Confidence 999986666667678888888775443322 245689999988754433333 567777777766 46789999999
Q ss_pred HHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--Ch
Q 011316 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EF 341 (488)
Q Consensus 265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~ 341 (488)
+|+|+...+......+.+.++++.+.+.|..+. .+++..+++..++.++.. +.....+.+.|+++.|+.++... |.
T Consensus 514 iLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kqeDd 592 (708)
T PF05804_consen 514 ILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQEDD 592 (708)
T ss_pred HHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhCchH
Confidence 999999866666666667899999999996552 457889999999988865 77778888999999999999876 78
Q ss_pred hHHHHHHHHHHHhccCCCHHHHHHH-HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011316 342 EIKKEAAWAISNATSGGSNEQIKFL-VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 342 ~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 404 (488)
++..+.++++..+..+. +.+..+ .+.+++..|++++++.+++++..|-.+|.-+...++..
T Consensus 593 E~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w 654 (708)
T PF05804_consen 593 EIVLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEW 654 (708)
T ss_pred HHHHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 89999999999999875 445555 45799999999999999999999999999888887654
No 11
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.2e-19 Score=170.59 Aligned_cols=389 Identities=19% Similarity=0.277 Sum_probs=313.6
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
..+..|+..|+.+ |+..|++|+.-|+++++-.+.+...-+.-..++|.|+.+|++..+.++...|+++|.+++.-.|..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 4678899999875 999999999999999988767777766667799999999999988999999999999999988999
Q ss_pred hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
...+++.+.||.|+.-|.. ...++.++++.+|-.|++..+. .+++.|++...+..+ +--+..+++.|+.+..|+|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYL-DFFSIHAQRVALAIAANCC 322 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986655 8899999999999999988764 788999999999999 6678899999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc---CCchhHHHHHHhCCHHHHHHhcCCCC----cchHh
Q 011316 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPS----PSVLI 260 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~ 260 (488)
..-.....-.....+|.|..+|...|.+..+.++-++..++. ..++..+.+...+++....+++.-.. ..+..
T Consensus 323 ksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 323 KSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred hcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 998888888889999999999999999999999999999884 45567777888899999999886532 34555
Q ss_pred HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-------------hhhHHHHHH---------------------
Q 011316 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------------KKSIKKEAC--------------------- 306 (488)
Q Consensus 261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-------------~~~v~~~a~--------------------- 306 (488)
..+..+..++.+.+.....+.+.++...+..+|.... .+.-..+..
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~ 482 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS 482 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence 6777888888887877777777788777777774321 000000000
Q ss_pred -------------------------------HHHHH----------------------HhcCCHHHHHHHHHcCChHHHH
Q 011316 307 -------------------------------WTISN----------------------ITAGNVNQIQAIIEAGIIGPLV 333 (488)
Q Consensus 307 -------------------------------~~L~n----------------------l~~~~~~~~~~l~~~~~l~~L~ 333 (488)
+.+.. +....++..+.+.. .++|.|+
T Consensus 483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLv 561 (1051)
T KOG0168|consen 483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLV 561 (1051)
T ss_pred hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHH
Confidence 11110 00011233333333 4799999
Q ss_pred HHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHC-CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011316 334 NLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG 411 (488)
Q Consensus 334 ~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 411 (488)
+++.+. ++.||..++.||..+....+.+.+..++.. ..-..+-.++.+.|..+..-|+....-+++.-+..
T Consensus 562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~------- 634 (1051)
T KOG0168|consen 562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT------- 634 (1051)
T ss_pred HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH-------
Confidence 999887 999999999999999998888887777654 55566777999999999999999998888765543
Q ss_pred ccchHHHHHHhhccHHHHHHhhc
Q 011316 412 GVNLFAQAIDDAEGLEKIENLQS 434 (488)
Q Consensus 412 ~~~~~~~~l~~~g~~~~l~~l~~ 434 (488)
|...|.+.|.+..+.+|..
T Consensus 635 ----F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 635 ----FSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred ----hhhhHhhhhHHHHHHHHhc
Confidence 7888999999999999976
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.83 E-value=2.3e-18 Score=166.90 Aligned_cols=365 Identities=20% Similarity=0.226 Sum_probs=285.4
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch--hH
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--CR 151 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~ 151 (488)
-+|..+.+|.+.+ +.++..|+.-+..+|.++.+.+..+.+.|+|+.|+.++.+.+.+++.+|+++|.||...... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4778889999988 89999999999999999999999999999999999999999999999999999999976654 67
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--------------ChhHH
Q 011316 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--------------DDEVL 217 (488)
Q Consensus 152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--------------~~~v~ 217 (488)
-.+.+.+.++.+++++.+..|.++++.+..+|+||+..+ ..........+..|..-+-.+ +..+.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 788999999999999977789999999999999999984 334444456666665544311 25678
Q ss_pred HHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcCCch---------------
Q 011316 218 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM--------------- 275 (488)
Q Consensus 218 ~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~--------------- 275 (488)
..+..+|+|++....+..+.+.+. |+++.|+..+++ .+....+.++.++.|+.+.-..
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 899999999998776666666665 888998888753 4556677888888888753220
Q ss_pred ----------------hhHH----------------------HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-
Q 011316 276 ----------------QTQC----------------------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN- 316 (488)
Q Consensus 276 ----------------~~~~----------------------~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~- 316 (488)
..+. +....++...+.+|....+..+.+.++.+|-|++.+.
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0000 1122234454555554447788999999999999842
Q ss_pred ---HHHHHHH-HHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC------CHHH
Q 011316 317 ---VNQIQAI-IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP------DPRI 386 (488)
Q Consensus 317 ---~~~~~~l-~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~------~~~v 386 (488)
...+..+ .+..+++.|++++..+++.|...++.+|.|++.+. .. +.++..++++.|++.|... +.++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 2233334 56789999999999999999999999999999864 33 4455589999999999853 3588
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCC
Q 011316 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 387 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~~ 455 (488)
+..++..|.+++...... ...+-+.+++++|..+..+ .++++.+.|..++..+|.-.
T Consensus 629 v~~vc~tl~niv~~~~~n------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLN------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHHhHHHHHHHhHHH------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 889999999998665543 4446668889999998644 57899999999999998853
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.81 E-value=1e-17 Score=162.36 Aligned_cols=365 Identities=21% Similarity=0.258 Sum_probs=282.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE-- 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~-- 107 (488)
-.+|..+..|.+.++.+|..|+..+..+.-++ ++....+.+.|+|+.|+.+|.+.. .+++.+|+++|.|+..++..
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcc
Confidence 45788999999999999999999998865554 666677778999999999999999 99999999999999986655
Q ss_pred hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-cc------------ccH
Q 011316 108 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EH------------AKL 173 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~------------~~~ 173 (488)
++-.+.+.++++.++++|+. .|.++++.+..+|+||++.+ .++..++. ..+..|...+. .. .+.
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccc
Confidence 88889999999999999997 89999999999999999873 34444443 45666665542 11 146
Q ss_pred hHHHHHHHHHHHhhcCC-C-CCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCCch------------
Q 011316 174 SMLRNATWTLSNFCRGK-P-QPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTND------------ 233 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~-~-~~~~~~~~~~~~~L~~ll~------~~~~~v~~~al~~L~~l~~~~~~------------ 233 (488)
++..++..+|.|++... + ........|.+..|+..++ ..|.+..+.++.++.|++..-..
T Consensus 389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~ 468 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN 468 (717)
T ss_pred eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence 78899999999999855 2 3333455788999988876 34778889999999999843210
Q ss_pred -------------------hHHH----------------------HHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhc
Q 011316 234 -------------------KIQA----------------------VIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 234 -------------------~~~~----------------------~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~ 271 (488)
..+. +....++..-..++ .+.++.+.+.+..+|-|++.
T Consensus 469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA 548 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA 548 (717)
T ss_pred ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence 0000 11111333322233 33566788999999999998
Q ss_pred CCchh----hHHH-hhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------C
Q 011316 272 GDDMQ----TQCI-INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------E 340 (488)
Q Consensus 272 ~~~~~----~~~~-~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~------~ 340 (488)
+.... +..+ .+..+++.++++|+.+ +..+...++.+|.|++.+ .. .+.++..++++.|++.|... +
T Consensus 549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~~~s 625 (717)
T KOG1048|consen 549 GLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPSTSLS 625 (717)
T ss_pred cCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCcCch
Confidence 76532 3333 4778999999999999 999999999999999986 33 34455678999999999875 3
Q ss_pred hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhh
Q 011316 341 FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 341 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~ 402 (488)
+++...++.+|.++... +....+.+.+.+.++.|+.+.++. +++..+.+...|..|..+.+
T Consensus 626 edtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 626 EDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999864 568889999999999999988864 45888888888888887766
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.80 E-value=5.2e-16 Score=152.83 Aligned_cols=399 Identities=16% Similarity=0.167 Sum_probs=300.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
.+..+|.+.+.+....++.+|..++.... ...+ ..+..+.|...|.+++ +.+|..+++.+.+++..+......+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~---~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALS---PDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccC---HHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 47778888888777888899999887542 2222 4578899999999999 99999999999999987777777788
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CC
Q 011316 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQ 192 (488)
Q Consensus 114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~~ 192 (488)
+.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..+|..+..++.+++... ..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999999999999877654 4566777788888888 5557788899999999998876 33
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcch-----H-hHHHHHH
Q 011316 193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV-----L-IPALRTV 266 (488)
Q Consensus 193 ~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v-----~-~~a~~~L 266 (488)
.......|+++.++..++++|.-++..++.++..++..+ ...+.+.+.|+++.|..++.+...+- . -..+...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 344455789999999999999999999999999999944 45688889999999999997643222 2 2234667
Q ss_pred hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-HHc-C----ChHHHHHHHhcCC
Q 011316 267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEA-G----IIGPLVNLLLNAE 340 (488)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~----~l~~L~~ll~~~~ 340 (488)
++++...+....... ..++..+..++.+. +...+..|..+++.++.. .+....+ ... + ++........++.
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 777775443332222 24566677777788 899999999999999865 5555555 332 2 3445555555667
Q ss_pred hhHHHHHHHHHHHhccCCCH---HH----HHH---HHHCCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011316 341 FEIKKEAAWAISNATSGGSN---EQ----IKF---LVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN 409 (488)
Q Consensus 341 ~~v~~~a~~aL~~l~~~~~~---~~----~~~---l~~~~~~~-~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 409 (488)
.++|..++.++.++...... +. ... ....+... .++.+++.+=++++..++..|..++...- .
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~W-g----- 424 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPW-G----- 424 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHH-H-----
Confidence 78999999999999654432 11 111 12234455 88888888879999999999999987643 2
Q ss_pred CCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011316 410 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 410 ~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
.+.+....|.++.+.+=....+++.++.-..++..+...-
T Consensus 425 ------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 425 ------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred ------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 2555666676777766556667888888888888877543
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.80 E-value=4.5e-16 Score=153.29 Aligned_cols=366 Identities=17% Similarity=0.185 Sum_probs=279.4
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011316 76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL 155 (488)
Q Consensus 76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 155 (488)
+.++..|++.+ .+....++.+|..+.. ....... ..+..+.|...|.++++.+|..+++.+++++.++......+.
T Consensus 41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~-~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSN-REQVELICDILKRLLS-ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcC-hHHHHHHHHHHHHHHh-ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 34888888887 6777888889998887 3222222 346689999999999999999999999999988887777888
Q ss_pred hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH
Q 011316 156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 235 (488)
Q Consensus 156 ~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 235 (488)
+.+.++.++..+ .+++..+...|+.+|..++...+........+.+..|..++.+.+..++..++.++.+++..+++..
T Consensus 117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 889999999999 8899999999999999999877544445556678889999988888999999999999999999888
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh-----HHHHHHHHHH
Q 011316 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-----IKKEACWTIS 310 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~-----v~~~a~~~L~ 310 (488)
..+.+.|+++.++..++++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+..... .-...+...+
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 989999999999999999888899999999999999 6777888899999999999997652222 1223345666
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHH-HHC-C----ChHHHHhhcCCCCH
Q 011316 311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL-VSQ-G----CIKPLCDLLNCPDP 384 (488)
Q Consensus 311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~-~----~~~~L~~ll~~~~~ 384 (488)
+++...+....... ..++..+.+++.+.|+..+..|..+++.+++ +.+....+ ... + ++..+.....+...
T Consensus 275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 77764343332222 2366777788888899999999999999986 44666666 322 2 35555555667778
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhc--cHH-HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE--GLE-KIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 385 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+++..++.++.+++......... + -.+.....+...+ ... .+..+.+.|=++++..+..++..+..
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~-~--i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDN-D--ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchH-H--HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 99999999999998665431100 0 0011122222222 233 77888899999999999999887553
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.78 E-value=4.8e-17 Score=146.11 Aligned_cols=381 Identities=16% Similarity=0.137 Sum_probs=276.8
Q ss_pred CCCHHHHHHHHHHHHHHhccC--CCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011316 41 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 118 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 118 (488)
..+..++..+..++......+ ++...+.-+..++++.|.+...+++ .++.+++.++|+|+|.++.++|..+.+.|+-
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa 131 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA 131 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence 455666777777777765332 1112333355678888889888887 7999999999999999999999999999998
Q ss_pred HHHHHhhCC-------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCC
Q 011316 119 PIFVRLLSS-------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 119 ~~L~~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
..+++.|+. .+.+....+...|.|..-++.+.+..+++.|+++.+...+. ...+....+.......++.+-.
T Consensus 132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~ 211 (604)
T KOG4500|consen 132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV 211 (604)
T ss_pred eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence 888887765 23577888899999999999999999999999998888774 3344444444444444433221
Q ss_pred C--CCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcc-------hH
Q 011316 191 P--QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPS-------VL 259 (488)
Q Consensus 191 ~--~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~-------v~ 259 (488)
. .............+++++.+ .++++.+.++..+...+.++.-. -.+.+.|.+..++.+++. +... ..
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 0 12223334566667777764 46788888889999888876544 336777899998888866 2211 22
Q ss_pred hHHHHHHhHhhcCCchhhHHHhhCC-ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011316 260 IPALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 338 (488)
Q Consensus 260 ~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~ 338 (488)
..++....-+..+. +..+.+...+ +++.+.+.+.+. +......+..+++|+++. +.....+++.+++..|++++..
T Consensus 291 k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 291 KRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Confidence 23444444444433 3444555444 899999999999 889999999999999997 5566778889999999999976
Q ss_pred -----CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCcc
Q 011316 339 -----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV 413 (488)
Q Consensus 339 -----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 413 (488)
++.+++..++.||.|++... ..+..+...|+.+.+...++...|.+....+..++-+...-+..
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~--------- 436 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI--------- 436 (604)
T ss_pred hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH---------
Confidence 26678899999999998754 44667788999999999999999999888888887766544422
Q ss_pred chHHHHHHhhccHHHHHHhhcCCCHH
Q 011316 414 NLFAQAIDDAEGLEKIENLQSHDNTE 439 (488)
Q Consensus 414 ~~~~~~l~~~g~~~~l~~l~~~~~~~ 439 (488)
..+....-..+++|.+...+++-.
T Consensus 437 --a~eL~kn~~l~ekLv~Wsks~D~a 460 (604)
T KOG4500|consen 437 --ACELAKNPELFEKLVDWSKSPDFA 460 (604)
T ss_pred --HHHHhcCHHHHHHHHHhhhCCccc
Confidence 244444455577778777776543
No 17
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.6e-15 Score=151.00 Aligned_cols=392 Identities=15% Similarity=0.168 Sum_probs=277.6
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
..-..++..+.+ ..+.+|..-+..+..+++..-.+ -..++++.|++..++++ +..|+.|+.+|..+...-...
T Consensus 79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccc
Confidence 344456777765 56899999999999998876322 34567888899999999 899999999999998732222
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc---hhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHH
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWT 182 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~ 182 (488)
-.... ..+.+.+.+.+.+++..+|..++++++.++...+ ...+.+. ..+|.++..+. +..|.+....++.+
T Consensus 153 ~~~~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~ 229 (1075)
T KOG2171|consen 153 LQPHL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEA 229 (1075)
T ss_pred cchhH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHH
Confidence 11111 1234555566666666699999999999886543 2222222 24666666553 44566667788888
Q ss_pred HHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHH-----------------------
Q 011316 183 LSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQA----------------------- 237 (488)
Q Consensus 183 L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~----------------------- 237 (488)
|..++...+.........++.....+..+. +..+|..|+.+|..+++..+...+.
T Consensus 230 l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 230 LIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 888888776666666677777777777764 6888999998888777642211110
Q ss_pred ----------------------HHH-----h-------CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC
Q 011316 238 ----------------------VIE-----A-------GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 283 (488)
Q Consensus 238 ----------------------~~~-----~-------~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 283 (488)
.++ . -+++.+-.++.++++.-|.+++.+|+.++.+........++
T Consensus 310 ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~- 388 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP- 388 (1075)
T ss_pred hhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-
Confidence 000 0 13455556678888999999999999999988877666555
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHH
Q 011316 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQ 362 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~ 362 (488)
.+++.++..|+++ ++.||..|+.+++.++..-...++......+.+.|+..+.+. ++.|+..|+.++.|++..+..+.
T Consensus 389 ~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~ 467 (1075)
T KOG2171|consen 389 KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI 467 (1075)
T ss_pred HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH
Confidence 6889999999999 999999999999999997666666666667888999999887 77999999999999998887665
Q ss_pred HHHHHHCCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCC-HHH
Q 011316 363 IKFLVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN-TEI 440 (488)
Q Consensus 363 ~~~l~~~~~~~-~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~-~~v 440 (488)
...... ++++ .|..++.++.+.+++.++.+|..+....... |...+.+. +..|..++...+ ++.
T Consensus 468 l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~-----------F~pY~d~~--Mp~L~~~L~n~~~~d~ 533 (1075)
T KOG2171|consen 468 LEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK-----------FIPYFDRL--MPLLKNFLQNADDKDL 533 (1075)
T ss_pred HHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh-----------hHhHHHHH--HHHHHHHHhCCCchhh
Confidence 544333 4666 4444666778899999999999998766543 34444333 566776654433 444
Q ss_pred HHHHHH
Q 011316 441 YEKAVK 446 (488)
Q Consensus 441 ~~~a~~ 446 (488)
+....+
T Consensus 534 r~Lrgk 539 (1075)
T KOG2171|consen 534 RELRGK 539 (1075)
T ss_pred HHHHhh
Confidence 433333
No 18
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.5e-17 Score=153.52 Aligned_cols=413 Identities=17% Similarity=0.192 Sum_probs=273.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
..++.+...++.+|--.-..+..+++...-... ..++|.|..+|.+++ ....+.|..+|..+++++.+.-+.=+
T Consensus 94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~ 167 (885)
T KOG2023|consen 94 ECLHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDV 167 (885)
T ss_pred HHHhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhc
Confidence 355666666666666666666666665432222 468999999999999 78999999999999997765544311
Q ss_pred hC----CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 114 DH----GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 114 ~~----g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
.. -.+|.++++.+++++.+|..|+.++..+....+.. .... -..++.+..+- .+.++.||.+.|.++..|..
T Consensus 168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Lle 244 (885)
T KOG2023|consen 168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLE 244 (885)
T ss_pred ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHH
Confidence 11 35789999999999999999999999887554321 1111 12455555555 88899999999999999999
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH-------------------------------
Q 011316 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA------------------------------- 237 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~------------------------------- 237 (488)
..+.+......++++.++...++.|.+|...|+.....+++.+.. ...
T Consensus 245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ee 323 (885)
T KOG2023|consen 245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPIC-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEE 323 (885)
T ss_pred hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHHHHccCccccccHHHhcCccc
Confidence 888888888899999999999999999998888888777753311 000
Q ss_pred -------------------------------------------------------------HHHhCC----HHHHHHhcC
Q 011316 238 -------------------------------------------------------------VIEAGV----CPRLVELLR 252 (488)
Q Consensus 238 -------------------------------------------------------------~~~~~~----l~~L~~lL~ 252 (488)
+....+ +|.|...|.
T Consensus 324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS 403 (885)
T ss_pred cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence 111122 333344445
Q ss_pred CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC--CHHHHHHHHHcCChH
Q 011316 253 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIG 330 (488)
Q Consensus 253 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~ 330 (488)
++++.+|++++-+++.++.+.-...-.-+ ..+++.++.+|.+. .+-||..+||+|+..+.- ..+ .+..+. .++.
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~ 479 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLE 479 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHH
Confidence 56677778888888877764322111111 13688899999999 999999999999998861 112 222222 2566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011316 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 331 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~---~~~~v~~~al~~L~~l~~~~~~~~~~ 407 (488)
.|++.+-+++..|++.|+.+++.+-.....+...++-. .+..|+..+.- .+--+.. .|++.+..+-...-..
T Consensus 480 ~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~--IL~~l~~af~kYQ~KNLlILY---DAIgtlAdsvg~~Ln~ 554 (885)
T KOG2023|consen 480 GLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY--ILDQLVFAFGKYQKKNLLILY---DAIGTLADSVGHALNK 554 (885)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH--HHHHHHHHHHHHhhcceehHH---HHHHHHHHHHHHhcCc
Confidence 66677777889999999999999988777776665433 44455544442 3333333 3444444332111000
Q ss_pred CCCCccchHHHHHHhhccHHHHHHhhc------------------------CCCHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 011316 408 GNTGGVNLFAQAIDDAEGLEKIENLQS------------------------HDNTEIYEKAVKILETYWVEEDEDEPLPP 463 (488)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~~l~~l~~------------------------~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 463 (488)
..|.+.+. --.+++...+.+ --.+.|++++..++++.....-..+.+|.
T Consensus 555 ------~~YiqiLm-PPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~ 627 (885)
T KOG2023|consen 555 ------PAYIQILM-PPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPT 627 (885)
T ss_pred ------HHHHHHhc-cHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 00112111 111222222211 22478899999999988877888888999
Q ss_pred CCCCCCccc
Q 011316 464 GDATQAGFG 472 (488)
Q Consensus 464 ~~~~~~~~~ 472 (488)
+++|.|+|-
T Consensus 628 ~~~pdkdfi 636 (885)
T KOG2023|consen 628 VEAPDKDFI 636 (885)
T ss_pred ccCCCcceE
Confidence 999999983
No 19
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=6.8e-15 Score=134.24 Aligned_cols=378 Identities=17% Similarity=0.125 Sum_probs=284.8
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH
Q 011316 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 121 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 121 (488)
..+.+...|++.|.+++... ..-..+.+.+++..|++.|..++ .++.......|..++- -.+++..+.+.|+++.|
T Consensus 275 KQeqLLrva~ylLlNlAed~--~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL 350 (791)
T KOG1222|consen 275 KQEQLLRVAVYLLLNLAEDI--SVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKL 350 (791)
T ss_pred HHHHHHHHHHHHHHHHhhhh--hHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHH
Confidence 34455556788888877643 44566778899999999999988 6888888888888887 67889999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhch
Q 011316 122 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA 201 (488)
Q Consensus 122 ~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 201 (488)
++++...+++++...+..+.|++.++. .+..++..|.+|.+..++..+... ..|+..+..++.++..+........
T Consensus 351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD~~K~MfayTdc 426 (791)
T KOG1222|consen 351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDDDAKAMFAYTDC 426 (791)
T ss_pred HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCcHHHHHHHHHHH
Confidence 999999999999999999999998765 688889999999999999544433 3466677777777655555666788
Q ss_pred HHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHH
Q 011316 202 LPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQC 279 (488)
Q Consensus 202 ~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 279 (488)
++.+++.+-+ .+.++-...+..-.|++.+.. ..+.+++..++..|+... +..++ .-...+.|++.+.......
T Consensus 427 i~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~ 501 (791)
T KOG1222|consen 427 IKLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNM 501 (791)
T ss_pred HHHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHH
Confidence 8888877654 355555555555557775543 335566666777777654 33333 2356777888766544444
Q ss_pred HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccC
Q 011316 280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG 357 (488)
Q Consensus 280 ~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 357 (488)
+++ .+.-+..+++...++..-.+++++++|+...+-+-.+.+-+.+.+|.+-..|+.+ ..+++.....+++.++..
T Consensus 502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d 579 (791)
T KOG1222|consen 502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD 579 (791)
T ss_pred HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh
Confidence 444 4566777776665777888999999999886566555566788999999999876 556888888888888864
Q ss_pred CCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC
Q 011316 358 GSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 435 (488)
Q Consensus 358 ~~~~~~~~l~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~ 435 (488)
......+...++++.|+++|+. .|.+++.+.+..+..++..... ..-++.+...-..+.+++++
T Consensus 580 --~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t------------r~~miket~~~AylIDLMHD 645 (791)
T KOG1222|consen 580 --LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT------------RRLMIKETALGAYLIDLMHD 645 (791)
T ss_pred --hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH------------HHHHHhhccchHHHHHHHhc
Confidence 4677888888999999999984 5678888888888888776332 24556777778889999999
Q ss_pred CCHHHHHHHHHHH
Q 011316 436 DNTEIYEKAVKIL 448 (488)
Q Consensus 436 ~~~~v~~~a~~~l 448 (488)
.|.++++.+...+
T Consensus 646 kN~eiRkVCDn~L 658 (791)
T KOG1222|consen 646 KNAEIRKVCDNAL 658 (791)
T ss_pred ccHHHHHHHHHHH
Confidence 9999987666554
No 20
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.73 E-value=5.9e-15 Score=132.83 Aligned_cols=404 Identities=13% Similarity=0.072 Sum_probs=294.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC---C---ChhHHHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD---D---FPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~---~---~~~v~~~a~~~L~~l~~ 103 (488)
+.++.|.+...|++.++..+++++|.++...+ .+.+..+.+.|+-..+++.|+.- + +.+....+...|.|...
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 56777777888999999999999999987765 78899999999977777777532 1 23455566778999998
Q ss_pred CCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011316 104 GTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180 (488)
Q Consensus 104 ~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~ 180 (488)
++.+.+.++++.|+++.|...+.- .+....+..+....|+.+-. +...+...+......+++++.....+++...+.
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 899999999999999999887653 56666666666666654321 112344555666778888886667888889999
Q ss_pred HHHHHhhcCCCCCChhhhhchHHHHHHhhcc-CCh-------hHHHHHHHHHHHhccCCchhHHHHHHhC-CHHHHHHhc
Q 011316 181 WTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDD-------EVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL 251 (488)
Q Consensus 181 ~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~-------~v~~~al~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL 251 (488)
..+...+.++...-.....|.+..++.+++. ++. .....++....-+..++ +.++.+...+ +++.+.+++
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHh
Confidence 9999999988777777778889999998875 221 22233333333344444 3456566655 899999999
Q ss_pred CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011316 252 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAG 327 (488)
Q Consensus 252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 327 (488)
.+.+......+.-+++|+++ ++....++++.+++..+++.+... .+-+++..++.+|.|++.. ..+...++..|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence 99999999999999999999 455667788889999999988441 1567888999999999885 34456788899
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHH-HCCChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhh
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEK 405 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~~~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~ 405 (488)
+...++..++...|.+...-+..+.-+..... ...-.+. ....++.|++.-+++|.. +.-.....+.-+++......
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~qe-~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd 481 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQE-YIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD 481 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhchH-HHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence 99999999999999999988888887765432 1222332 335677777777777754 44445555555554432111
Q ss_pred ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 011316 406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448 (488)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l 448 (488)
....+.+.||++....+..+.+-..+..|...+
T Consensus 482 ----------v~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal 514 (604)
T KOG4500|consen 482 ----------VILTVPKSGGIKEKVSMFTKNHINMQNEALVAL 514 (604)
T ss_pred ----------hHhhccccccHHHHHHHHHHhhHHHhHHHHHHH
Confidence 344566788899988888777777776666554
No 21
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.5e-14 Score=145.60 Aligned_cols=360 Identities=19% Similarity=0.209 Sum_probs=250.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc---
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS--- 106 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~--- 106 (488)
+.++.|.++.+|+++..|..|+..|..+...-++.....+. .+.+.+.+.+.+++.+ +|..|+++++.++...+
T Consensus 118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccch
Confidence 34555666667999999999999999987654333222222 3566777888888844 99999999999887443
Q ss_pred hhhHHHHhCCCHHHHHHhhC----CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-ccccHhHHHHHHH
Q 011316 107 ENTRVVIDHGAVPIFVRLLS----SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATW 181 (488)
Q Consensus 107 ~~~~~~~~~g~i~~L~~lL~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~v~~~a~~ 181 (488)
..+..+. ..+|.++..+. .++.+....++.+|..++...|.+-...+. .++...+.... ++-+..+|..|+.
T Consensus 195 ~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe 271 (1075)
T KOG2171|consen 195 SEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALE 271 (1075)
T ss_pred HHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHH
Confidence 2233332 35566665554 466776777888888887766554332221 12333333332 2235566666666
Q ss_pred HHHHhhcCCCCC-------------------------------------C---------------------hhhhhchHH
Q 011316 182 TLSNFCRGKPQP-------------------------------------L---------------------FEQTRPALP 203 (488)
Q Consensus 182 ~L~~l~~~~~~~-------------------------------------~---------------------~~~~~~~~~ 203 (488)
++..+++..+.. . ......+++
T Consensus 272 ~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~ 351 (1075)
T KOG2171|consen 272 FLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFE 351 (1075)
T ss_pred HHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHH
Confidence 666554331000 0 011133455
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC
Q 011316 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH 283 (488)
Q Consensus 204 ~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 283 (488)
.+-.++.++++.-|..++.+|+.++++..+.+...+. .+++.++..|.+++|.||..|+.+++.++..-....+.-...
T Consensus 352 ~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e 430 (1075)
T KOG2171|consen 352 ALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE 430 (1075)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH
Confidence 5666778899999999999999999998877776554 788888999999999999999999999999877777766677
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChH-HHHHHHhcCChhHHHHHHHHHHHhccCCCHH
Q 011316 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIG-PLVNLLLNAEFEIKKEAAWAISNATSGGSNE 361 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 361 (488)
.+++.|+..+.+..+++++..|+.++-|++... .+.+...+. +++. .+..+++++.+.+++.++.+|+..+......
T Consensus 431 ~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 431 RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 888899999999888999999999999999843 344444444 4666 5555666778999999999999999877666
Q ss_pred HHHHHHHCCChHHHHhhcCCCC----HHHHHHHHHHHHHHHH
Q 011316 362 QIKFLVSQGCIKPLCDLLNCPD----PRIVTVCLEGLENILK 399 (488)
Q Consensus 362 ~~~~l~~~~~~~~L~~ll~~~~----~~v~~~al~~L~~l~~ 399 (488)
..++.-. .++.|...|...+ ..++-.+++++.-+-.
T Consensus 510 F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~ 549 (1075)
T KOG2171|consen 510 FIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIAR 549 (1075)
T ss_pred hHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHH
Confidence 7777654 7888888877654 3466666666665543
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3.4e-14 Score=129.78 Aligned_cols=361 Identities=15% Similarity=0.155 Sum_probs=280.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+..|++.|..++.++.......|.++.-. .++...+.+.|.+..|++++...+ ++++...+..+.|++. +...|
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr 379 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR 379 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence 5678899999998998888888888885443 466788899999999999999999 9999999999999999 78899
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+++.|.+|.+..++.++. -...|+..++.++.++. .+..+.....++.+++.+..+.+..+-...+...-|+|.+
T Consensus 380 ~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred HHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 99999999999999997743 33457788888887655 5777777788999988876777777777777777899988
Q ss_pred CCCCChhhhhchHHHHHHh-hccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHh
Q 011316 190 KPQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVG 267 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~l-l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~ 267 (488)
..+.+.+.....+..+++. ++..|.- ....++|++++.......+++ .+..|...++. ++++....++++++
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla 530 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA 530 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence 8777777777777777754 4455543 345678888776655444553 45556666655 45667788999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHH
Q 011316 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIK 344 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~ 344 (488)
++....-...+.+.+.+.+|.+-..|+.+. ..++....+-+++.++.. ......+...++++.++++|+.. |.+..
T Consensus 531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV 609 (791)
T KOG1222|consen 531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFV 609 (791)
T ss_pred hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence 998876677777778899999999887642 345666666777777664 44555566789999999999875 67777
Q ss_pred HHHHHHHHHhccCCCHHHHHH-HHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 011316 345 KEAAWAISNATSGGSNEQIKF-LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 406 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~-l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~ 406 (488)
.+.+.++..+..+. ..+.. +.+...-..|++++++.+.++|+.|-.+|-.+...+....+
T Consensus 610 ~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK 670 (791)
T KOG1222|consen 610 VQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK 670 (791)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88888888888753 23333 34567888999999999999999999999988877665543
No 23
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.2e-14 Score=126.93 Aligned_cols=310 Identities=12% Similarity=0.126 Sum_probs=253.0
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-CChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011316 40 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 118 (488)
Q Consensus 40 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 118 (488)
.+++..+...++.+|..+..+. + .+.+..+...++++|... ++.++-...+.++..-|..++.+|+.+++.+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~q-p----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQ-P----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCC-c----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 3577788888888888866543 2 245567888889988654 236888888889999888889999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc---------hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 119 PIFVRLLSS-PTDDVREQAVWALGNVAGDSP---------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 119 ~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+.+...+.. +...+.+.+.|++..+..+++ +....+...|++..|++.+.-..++.+...++.+|..++-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999977765 445688889999999876543 2345677778888999999767789999999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccC-Ch---hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHH
Q 011316 189 GKPQPLFEQTRPALPALERLIHSN-DD---EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPA 262 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~-~~---~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a 262 (488)
.++........|++..+++++.+. +. .....++..|+.++.+++. ...+++.|+.+.++.++.. .+|.+...+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv-Ks~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV-KSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch-HHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 877777778899999999999873 33 3557788888888877654 4779999999999988743 678999999
Q ss_pred HHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 011316 263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 341 (488)
Q Consensus 263 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 341 (488)
+.+++.++-..++....+++.|+-...++-|+ ++....+++.|||.+.|++..+.+++..++.. .++.|+..-...++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence 99999999999999999999999999999885 45567899999999999999878888777775 67888888888888
Q ss_pred hHHHHHHHHHHHhcc
Q 011316 342 EIKKEAAWAISNATS 356 (488)
Q Consensus 342 ~v~~~a~~aL~~l~~ 356 (488)
.....|-.+|..+-.
T Consensus 430 tce~~akaALRDLGc 444 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGC 444 (461)
T ss_pred cHHHHHHHHHHhcCc
Confidence 888888889988865
No 24
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.71 E-value=6.5e-15 Score=149.50 Aligned_cols=362 Identities=19% Similarity=0.204 Sum_probs=274.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC--ChhHHHHHHHHHHHhcCCCchhhH
Q 011316 33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
..++..+...|++ ..++.|..+.+. .+....+...|.++.|+++|.-++ ..+.+..|-.+|.||....++...
T Consensus 200 ~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr 274 (2195)
T KOG2122|consen 200 NSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR 274 (2195)
T ss_pred hHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh
Confidence 3566666666654 335556664432 566788889999999999998654 257888899999999986665543
Q ss_pred HHHhCCCHHHHH---H-------hhCC--------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc----
Q 011316 111 VVIDHGAVPIFV---R-------LLSS--------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---- 168 (488)
Q Consensus 111 ~~~~~g~i~~L~---~-------lL~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---- 168 (488)
.-.+.-++..|- . ++.. .+..-...|+.+|..++.+ ++.|..+-+.|+++.+-+++.
T Consensus 275 ~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~ 353 (2195)
T KOG2122|consen 275 GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHE 353 (2195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333323333332 1 2222 1112223566677777655 557999999999999988773
Q ss_pred -------ccccHhHHHHHHHHHHHhhcCCCC-C-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHH
Q 011316 169 -------EHAKLSMLRNATWTLSNFCRGKPQ-P-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 239 (488)
Q Consensus 169 -------~~~~~~v~~~a~~~L~~l~~~~~~-~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 239 (488)
+.....+++++..+|.||+.++.. + ......|++..++..|.+...++......+|+||+...+..++.++
T Consensus 354 mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvL 433 (2195)
T KOG2122|consen 354 MHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVL 433 (2195)
T ss_pred hcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHH
Confidence 122457899999999999998833 2 3334579999999999988889999999999999976655555544
Q ss_pred -HhCCHHHHHHh-cCCCCcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhcccc---hhhHHHHHHHHHHHHh
Q 011316 240 -EAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNY---KKSIKKEACWTISNIT 313 (488)
Q Consensus 240 -~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~ 313 (488)
+.|-+..|..+ |....+......+.+|+||+.+..+....+- -.|.+..|+.+|.... ...+-..|..+|.|.+
T Consensus 434 rE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVS 513 (2195)
T KOG2122|consen 434 RETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVS 513 (2195)
T ss_pred HhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHH
Confidence 55888888776 4556667888999999999998777665554 4588999999996541 3456778888998887
Q ss_pred c---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 011316 314 A---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 390 (488)
Q Consensus 314 ~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a 390 (488)
. .+.++++.+.+++++..|++.|++.+..+..++|.+|.||.... ++.-++|++.|.+..|.+++++++..+..-+
T Consensus 514 S~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~-p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GS 592 (2195)
T KOG2122|consen 514 SLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARS-PEDQQMLWDDGAVPMLRNLIHSKHKMIAMGS 592 (2195)
T ss_pred hHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCC-HHHHHHHHhcccHHHHHHHHhhhhhhhhhhH
Confidence 6 46788888999999999999999999999999999999998764 5667999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 011316 391 LEGLENILKAG 401 (488)
Q Consensus 391 l~~L~~l~~~~ 401 (488)
..+|.|++..-
T Consensus 593 aaALrNLln~R 603 (2195)
T KOG2122|consen 593 AAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHhcCC
Confidence 99999998754
No 25
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.9e-13 Score=119.50 Aligned_cols=317 Identities=15% Similarity=0.167 Sum_probs=247.3
Q ss_pred cCCHHHHHHhh---cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCC
Q 011316 72 SGVVPRFIEFL---SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD 146 (488)
Q Consensus 72 ~~~i~~L~~lL---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~ 146 (488)
.|..+.++-++ .+++ ..+-..++.+|..+..+.|+. .+..+...++.+|.. ++.++....+..+..-|..
T Consensus 103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 45555544433 3445 677888899998888866654 456678889998864 6788888888888888888
Q ss_pred CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC----------ChhhhhchHHHHHHhhccC-Chh
Q 011316 147 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP----------LFEQTRPALPALERLIHSN-DDE 215 (488)
Q Consensus 147 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~----------~~~~~~~~~~~L~~ll~~~-~~~ 215 (488)
++..++.+++.++++.+..-+..+....+.+.++|+++.+...+... ......+++..|++.+... ++.
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 88899999999999988888866666688899999999998765221 1122245678888888754 789
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-Ccc---hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH
Q 011316 216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPS---VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 291 (488)
Q Consensus 216 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ 291 (488)
+...++.+|..++-.++ ..+.+.+.|+++.++.++.+. +.. ....++..|..++. ++.....+++.|+.+.++.
T Consensus 258 ~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~ 335 (461)
T KOG4199|consen 258 SLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIIT 335 (461)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHH
Confidence 99999999999987664 557799999999999999874 333 34567888888876 6777888889999999988
Q ss_pred Hh-cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316 292 LL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVS 368 (488)
Q Consensus 292 lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 368 (488)
++ ++..++.+..+++.+++-++...+++...+++.|+-...++.++.. ...++++|++.+.|++..+ .+++..++.
T Consensus 336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l~ 414 (461)
T KOG4199|consen 336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILLA 414 (461)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHHh
Confidence 66 4555889999999999999998899999999999999999988875 5579999999999999865 455566555
Q ss_pred CCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011316 369 QGCIKPLCDLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 369 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l 397 (488)
.+++.|+..-+..++.....+-.+|+.+
T Consensus 415 -~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 415 -NGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred -ccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 5677777777777777777777777655
No 26
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.68 E-value=3.6e-14 Score=134.62 Aligned_cols=364 Identities=16% Similarity=0.113 Sum_probs=241.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVV 112 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~ 112 (488)
.++..+.+.+|+..+.|..-..+.+.+. ++.....++.|.++.+..+++..+ ..+.+...+.++.....+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 4566677888999999999999988776 455557899999999999987654 26677777778888888788888999
Q ss_pred HhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHH--HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 113 IDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 113 ~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+.+.++.|.+++.+.+ ..+++..++++.++.+.++..-.. ......+..+..++ ..+...+...-+....+++..
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~ 170 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST 170 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence 99999999999999987 899999999999998765421111 11111122222222 111111111111222222221
Q ss_pred CCCCChhhhh-------------------------------------------------chHH--HHHHhhccCChhHHH
Q 011316 190 KPQPLFEQTR-------------------------------------------------PALP--ALERLIHSNDDEVLT 218 (488)
Q Consensus 190 ~~~~~~~~~~-------------------------------------------------~~~~--~L~~ll~~~~~~v~~ 218 (488)
.......... ++.+ .+.+++++++...+.
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l 250 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL 250 (678)
T ss_pred chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence 1111111111 2222 233344455555555
Q ss_pred HHHHHHHHhccCCchhH-----------------HH----------------------------------HHHhCCHHHH
Q 011316 219 DACWALSYLSDGTNDKI-----------------QA----------------------------------VIEAGVCPRL 247 (488)
Q Consensus 219 ~al~~L~~l~~~~~~~~-----------------~~----------------------------------~~~~~~l~~L 247 (488)
.++.++.++...+.+.- +. ..+....+.+
T Consensus 251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~ 330 (678)
T KOG1293|consen 251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT 330 (678)
T ss_pred HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence 55555555543320000 00 0000011111
Q ss_pred HHhc----------------------------------------------------CCCCcchHhHHHHHHhHhhcCCch
Q 011316 248 VELL----------------------------------------------------RHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 248 ~~lL----------------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
.+++ ...+...+.+|+-++-++++.-..
T Consensus 331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~a 410 (678)
T KOG1293|consen 331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSA 410 (678)
T ss_pred HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 1110 112334555566666666554333
Q ss_pred hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
.+..+-...+.+++++++..+ +..++..+.++++|++.........++..|+++.+.+++.+.++.++..+.|+|.++.
T Consensus 411 L~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 411 LRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred HHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 333344567899999999888 9999999999999999977778889999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
.+++......+...-....+..+.+++++.|+++++..++|+...
T Consensus 490 f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 490 FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 998877777777767777888888999999999999999999765
No 27
>PRK09687 putative lyase; Provisional
Probab=99.67 E-value=1.4e-14 Score=130.96 Aligned_cols=256 Identities=15% Similarity=0.134 Sum_probs=202.6
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (488)
--++.|.++|.+++ ..+|..|++.|..+-. ..+++.+..++.++++.+|..++++|+.+-.....
T Consensus 23 ~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 45788899999999 8999999999987764 24578888899999999999999999998542211
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011316 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 232 (488)
....++.|..++.+++++.|+..++.+|++++...... ...++..+...+.++++.|+..++++|+.+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---
Confidence 11245667767558889999999999999987543211 23456667788888999999999999986632
Q ss_pred hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011316 233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312 (488)
Q Consensus 233 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl 312 (488)
...++.|+.+|.++++.+|..|+.+|+.+...++ .+.+.|+..+.+. ++.||..|+++|+.+
T Consensus 158 --------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 --------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALR 219 (280)
T ss_pred --------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHcc
Confidence 1467899999999999999999999999944333 3567799999988 999999999999986
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHH
Q 011316 313 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCL 391 (488)
Q Consensus 313 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~al 391 (488)
-. + .+++.|++.+++++ ++..++.+|+.+.. + ..++.|.++++ ++|..++..+.
T Consensus 220 ~~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~---------~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---K---------TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence 32 3 37899999999865 67889999999864 2 25788888886 78999999998
Q ss_pred HHHHH
Q 011316 392 EGLEN 396 (488)
Q Consensus 392 ~~L~~ 396 (488)
+++..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 88753
No 28
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=9.1e-15 Score=148.49 Aligned_cols=326 Identities=18% Similarity=0.191 Sum_probs=248.0
Q ss_pred ccHHHHHHHhcC---CCHHHHHHHHHHHHHHhccCCCcc--HHHHHHcCCHHHHHH-------hhcCC------CChhHH
Q 011316 30 ESLPAMVAGVWS---DDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIE-------FLSRD------DFPQLQ 91 (488)
Q Consensus 30 ~~i~~l~~~L~s---~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~-------lL~~~------~~~~v~ 91 (488)
|.+|.+++.|.- ++.+.+..|-.+|.+++...+.+. .+.+.--.+++.+.. .++.. ...+-+
T Consensus 235 gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~ 314 (2195)
T KOG2122|consen 235 GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQ 314 (2195)
T ss_pred cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchh
Confidence 899999999973 457889999999999987653222 122111112222221 12211 113445
Q ss_pred H-HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC------------CCHHHHHHHHHHHhhhhCCCchhHHH-HHhc
Q 011316 92 F-EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS------------PTDDVREQAVWALGNVAGDSPKCRDL-VLSN 157 (488)
Q Consensus 92 ~-~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~------------~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~ 157 (488)
. .|+..|..++. ++++|..+.+.|+++++-.++.- ....+|+.+..+|.||..++...+.. +-..
T Consensus 315 lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~r 393 (2195)
T KOG2122|consen 315 LCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQR 393 (2195)
T ss_pred hHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhh
Confidence 5 56666777777 89999999999999999887742 23578999999999999877655544 4556
Q ss_pred CChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHh-hccCChhHHHHHHHHHHHhccCCchh
Q 011316 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDK 234 (488)
Q Consensus 158 ~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~L~~l-l~~~~~~v~~~al~~L~~l~~~~~~~ 234 (488)
|++..++..| .+...++......+|.||+.... .+......|-+..|+.. ++.........++.+|+||+.+..++
T Consensus 394 gfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteN 472 (2195)
T KOG2122|consen 394 GFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTEN 472 (2195)
T ss_pred hHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhccccc
Confidence 8899999999 66666788888899999987652 22333345656666654 55667788999999999999887766
Q ss_pred HHHHHHh-CCHHHHHHhcCCCC----cchHhHHHHHHhHhhc---CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHH
Q 011316 235 IQAVIEA-GVCPRLVELLRHPS----PSVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 306 (488)
Q Consensus 235 ~~~~~~~-~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~ 306 (488)
...++.. |.+..|+.+|.... -.+.+.+-.+|.|.+. .++..++.+.+++++..|+..|++. +..+...+|
T Consensus 473 KA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaC 551 (2195)
T KOG2122|consen 473 KAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNAC 551 (2195)
T ss_pred chhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecch
Confidence 6666654 88999999997752 4577777777777654 4566778888999999999999999 899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316 307 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 307 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
.+|+||+..+++..+.+++.|.++.|..++.+++..+..-++.+|.|+...-
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999998999999999999999999999999999999999999998654
No 29
>PRK09687 putative lyase; Provisional
Probab=99.66 E-value=3.5e-14 Score=128.41 Aligned_cols=255 Identities=16% Similarity=0.123 Sum_probs=200.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
-.++.|...|.+++..+|..+++.|..+-. ..+++.+.+++++++ +.+|..|+++|+.+-... ..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~-~~- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAK-RC- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCc-cc-
Confidence 578889999999999999999999988532 136778888899998 999999999999987522 11
Q ss_pred HHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 110 RVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 110 ~~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
....++.|..+ ++++++.+|..++.+|++++...... ...++..+...+ .+.+..|+..++++|..+..
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC
Confidence 11346777776 67789999999999999996443211 011344455556 66789999999999976643
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
...++.|+.++.++++.|+..++.+|+.+....+ ..++.|+..|.+.++.||..|++.|+.
T Consensus 158 ----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 ----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred ----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 3588999999999999999999999999843322 456778999999999999999999988
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHH
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEA 347 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a 347 (488)
+-. + .+++.|++.++++ + ++..++.+|+++.. +. .+|.|..++. .+|..++..|
T Consensus 219 ~~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a 273 (280)
T PRK09687 219 RKD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKA 273 (280)
T ss_pred cCC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHH
Confidence 533 2 4688999999887 4 67889999998854 22 7899999997 6699999999
Q ss_pred HHHHHH
Q 011316 348 AWAISN 353 (488)
Q Consensus 348 ~~aL~~ 353 (488)
.++|..
T Consensus 274 ~~a~~~ 279 (280)
T PRK09687 274 IDKLKR 279 (280)
T ss_pred HHHHhc
Confidence 998853
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.64 E-value=2e-13 Score=144.30 Aligned_cols=276 Identities=16% Similarity=0.193 Sum_probs=221.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++.|+..|.++++.+|..|+..|..+.. ...++.|+.+|.+++ +.+|..|+..|..+....+
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence 567889999999999999999999998532 246889999999988 8999999999988854111
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+.|...|.++++.+|..++.+|..+.... ...++..+ .+.++.++..|+.+|..+-.
T Consensus 685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence 2357778888999999999999999874221 23456677 88899999999999997521
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
.+.+..++.++++.|+..++.+|..+..... ..++.|..++.++++.+|..|+..|+.+
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 2346788999999999999999998865432 2367788999999999999999999998
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011316 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 349 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 349 (488)
... + .....+...|.++ ++.||..|+.+|+.+... ..++.|..++.+++..||..|++
T Consensus 803 g~~-~---------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~~-----------~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCP-P---------DDVAAATAALRAS-AWQVRQGAARALAGAAAD-----------VAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCc-c---------hhHHHHHHHhcCC-ChHHHHHHHHHHHhcccc-----------chHHHHHHHhcCCCHHHHHHHHH
Confidence 542 1 1235688889888 899999999999987432 25688999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011316 350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 396 (488)
Q Consensus 350 aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~ 396 (488)
+|..+. .++. ..+.|...+++++..|+..+..+|..
T Consensus 861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999972 2332 35667789999999999999988863
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.58 E-value=5.9e-13 Score=117.55 Aligned_cols=238 Identities=19% Similarity=0.213 Sum_probs=182.6
Q ss_pred hhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011316 197 QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 197 ~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
...+-++.++.+|+. .|+.+++.++.++++.+..+. ....+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~-nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF-NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh-HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 446778899999985 589999999999999876654 447788889999999999999999999999999999885443
Q ss_pred hhHHHhhCCChHHHHHH-hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011316 276 QTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 354 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~l-L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 354 (488)
. .. ++. .++.+.+. ...+.+..++..++.+|.|++..+.. ..++. +.++.+++++..++..+|..++++|.|+
T Consensus 88 ~-~~-Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 88 Q-EQ-IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred H-HH-HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 3 22 332 35555553 44444778999999999999875222 22332 3799999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhh---hccCCCCccchHHHHHHhhc-cHHHH
Q 011316 355 TSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAE---KNMGNTGGVNLFAQAIDDAE-GLEKI 429 (488)
Q Consensus 355 ~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~---~~~~~~~~~~~~~~~l~~~g-~~~~l 429 (488)
+. ++...+.++..+++..++.+++.+ +.++...++..+.|+-..-.+. .....+ ..+.....|.+.+ .-++|
T Consensus 162 S~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~-~~~~L~~~~~e~~~~~~~l 238 (254)
T PF04826_consen 162 SE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDF-SEDSLFSLFGESSQLAKKL 238 (254)
T ss_pred cc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccC-CchhHHHHHccHHHHHHHH
Confidence 97 458889999999999999999975 5788888999998885433222 111111 1233446676666 68889
Q ss_pred HHhhcCCCHHHHHHH
Q 011316 430 ENLQSHDNTEIYEKA 444 (488)
Q Consensus 430 ~~l~~~~~~~v~~~a 444 (488)
..+..|++++|+++.
T Consensus 239 ~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 239 QALANHPDPEVKEQV 253 (254)
T ss_pred HHHHcCCCHHHhhhc
Confidence 999999999999864
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.58 E-value=1.5e-12 Score=137.79 Aligned_cols=277 Identities=16% Similarity=0.188 Sum_probs=218.8
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011316 72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151 (488)
Q Consensus 72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (488)
...++.|+..|++++ +.+|..|+..|+.+.. .+.++.|...|+++++.+|..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence 346789999999999 9999999999998753 2458999999999999999999999988853222
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
..+.+...| ++.++.++..++.+|..+.... ...++..+.++++.++..++.+|..+..
T Consensus 685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence 124566777 6789999999999998865321 2357788999999999999999997621
Q ss_pred chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
.+.|...+.++++.+|..++.+|+.+..... ..++.|..+++++ ++.+|..|+.+|++
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~ 801 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE 801 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence 2346678899999999999999998865321 2367788999998 89999999999998
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 011316 312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL 391 (488)
Q Consensus 312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al 391 (488)
+... +. ..+.+...+.++++.||..|+.+|..+... ..++.|..+|+++++.||..+.
T Consensus 802 ~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 802 LGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred cCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence 8543 11 335678889999999999999999987431 2468889999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316 392 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450 (488)
Q Consensus 392 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 450 (488)
.+|..+ ...+ ...+.|...+++++.+|+..|...|+.
T Consensus 860 ~aL~~~-~~~~---------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 860 LALTRW-PGDP---------------------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHhcc-CCCH---------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999885 1111 114557788889999999999988763
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.55 E-value=4.8e-13 Score=135.27 Aligned_cols=361 Identities=17% Similarity=0.218 Sum_probs=252.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.++.+.+.|.++++.++-.|++++.++... +.. ..+++.+.+++.+++ +.+|..|+.++..+...+|+...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---~~~-----~~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP---EMA-----EPLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---HHH-----HHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhccc---chh-----hHHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence 567788889999999999999999997632 222 236788899999999 99999999999999886655432
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhh
Q 011316 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~L~~l~ 187 (488)
.. .++.+.+++.+.++.++..|+.++..+ ..++.... ..++.++..+. ...++-.+..++.++..++
T Consensus 151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 12 589999999889999999999999999 22222101 23444444432 5678888888888888777
Q ss_pred cCCCCCChhhh--hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011316 188 RGKPQPLFEQT--RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 188 ~~~~~~~~~~~--~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
...+ ... ..+++.+..++++.++.+...++.++..+..... .-..+++.+..++.++++.++..++..
T Consensus 221 ~~~~----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~ 290 (526)
T PF01602_consen 221 PMEP----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDS 290 (526)
T ss_dssp SSSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred cCCh----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHH
Confidence 5531 222 5688888888988899999999999998876543 222677889999999899999999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChhH
Q 011316 266 VGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFEI 343 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v 343 (488)
|..++...+.. + . .....+..+. ++ +..+|..++.++..++. +.+... +++.|...+.+ ++.++
T Consensus 291 L~~l~~~~~~~---v-~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~ 356 (526)
T PF01602_consen 291 LSQLAQSNPPA---V-F--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDF 356 (526)
T ss_dssp HHHHCCHCHHH---H-G--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHH
T ss_pred HHHhhcccchh---h-h--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhh
Confidence 99999865222 2 1 2233344555 55 88999999999999975 333333 56778888844 47889
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011316 344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (488)
+..++.+++.++....+.... .++.+++++...+..+...+...+.+++...+..+ ...
T Consensus 357 ~~~~i~~I~~la~~~~~~~~~------~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----------~~~---- 415 (526)
T PF01602_consen 357 RRELIKAIGDLAEKFPPDAEW------YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----------EKI---- 415 (526)
T ss_dssp HHHHHHHHHHHHHHHGSSHHH------HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----------HHH----
T ss_pred hhhHHHHHHHHHhccCchHHH------HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----------HHH----
Confidence 999999999988543211111 36777778877777777777777777775544321 111
Q ss_pred ccHHHHHHh-hcCCCHHHHHHHHHHHHHhcCCCCC
Q 011316 424 EGLEKIENL-QSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 424 g~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
++.+.++ .+-.++++...+.|++.+|-+..++
T Consensus 416 --l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 416 --LKKLIELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp --HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred --HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 2333333 3356777888888888887665433
No 34
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.51 E-value=9.4e-13 Score=116.29 Aligned_cols=196 Identities=19% Similarity=0.238 Sum_probs=162.6
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316 70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 149 (488)
.+.+-++.|+.+|+..++|.+++.++.++++.+. .+.+++.+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 4556789999999977669999999999999887 889999999999999999999999999999999999999877654
Q ss_pred hHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316 150 CRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 150 ~~~~~~~~~~i~~l~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
+..+.. .+..+++.... ..+..++..++.+|.+++....... ...+.++.++.++.+++..++..++++|.|++
T Consensus 88 -~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~--~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 -QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH--MLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred -HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh--hHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 444332 46666665433 3478899999999999987653322 23568999999999999999999999999999
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcC
Q 011316 229 DGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG 272 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~ 272 (488)
.+.. ..+.++..+++..++.++... ..++...++..+.|+..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 8875 446688889999999999875 577889999999999764
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.50 E-value=6.9e-11 Score=119.60 Aligned_cols=358 Identities=18% Similarity=0.211 Sum_probs=253.3
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316 34 AMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 34 ~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
.+.+.+.+. +...+..++..+..+.... .+. .-+.+..++++.+++ ...+.-+-..+..+...+++....
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence 455666655 7777887877777765543 221 257888899999877 899999888899998866663222
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011316 112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 112 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 191 (488)
+++.+.+-+.++++.++..|++++++++ .++..+. .++.+.+++ .++++.||+.|+.++..+....+
T Consensus 80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence 3688888899999999999999999997 3333222 466777777 78899999999999999988753
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 192 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
.. .... +++.+..++.++++.++..|+.++..+ ..++.....+. ...+..+.+++...+|..+..+++++..++.
T Consensus 147 ~~--~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DL--VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CC--HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HH--HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 32 1112 689999999999999999999999999 33322211112 2455666677788899999999999999988
Q ss_pred CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHH
Q 011316 272 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 351 (488)
Q Consensus 272 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL 351 (488)
..+..... ..+++.+..++++. ++.+..+++.++..+... +. .-..+++.|.+++.++++.++..++.+|
T Consensus 222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 66554421 35678888899888 999999999999988765 33 2234788899999998999999999999
Q ss_pred HHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHH
Q 011316 352 SNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE 430 (488)
Q Consensus 352 ~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~ 430 (488)
..++... + ..+ . ........+. +++..++..++..|..++.... +... ++.|.
T Consensus 292 ~~l~~~~-~---~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n-------------~~~I------l~eL~ 345 (526)
T PF01602_consen 292 SQLAQSN-P---PAV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANESN-------------VKEI------LDELL 345 (526)
T ss_dssp HHHCCHC-H---HHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH-------------HHHH------HHHHH
T ss_pred HHhhccc-c---hhh-h--hhhhhhheecCCCChhHHHHHHHHHhhcccccc-------------hhhH------HHHHH
Confidence 9998754 1 121 1 2222333444 7889999999999998876543 1222 33344
Q ss_pred Hhh-cCCCHHHHHHHHHHHHHhcC
Q 011316 431 NLQ-SHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 431 ~l~-~~~~~~v~~~a~~~l~~~~~ 453 (488)
... ...+++++..+...+..+..
T Consensus 346 ~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 346 KYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp HHHHHC--HHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhhhhhHHHHHHHHHh
Confidence 444 44466677776666655443
No 36
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=8.5e-13 Score=125.16 Aligned_cols=314 Identities=18% Similarity=0.216 Sum_probs=218.0
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC----ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011316 116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG----ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 116 g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~----~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 191 (488)
.+++.|..+|.+++....+.|..+|..+|+++...-+.-.... .++.++++. ++.++.+|..|+.++..+.....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence 3689999999999999999999999999999876433322122 366677777 78899999999999988877655
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 192 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
..-......++..+..+-.+++++||...|.++..+....+++...-.. ++++.++...++.+++|...||.....++.
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 5555566788888888888899999999999999999766554433333 778888888888899999999999999987
Q ss_pred CCchhhHHHhh--CCChHHHHHHhcccc----------------------------------------------------
Q 011316 272 GDDMQTQCIIN--HQALPCLLDLLTQNY---------------------------------------------------- 297 (488)
Q Consensus 272 ~~~~~~~~~~~--~~~~~~L~~lL~~~~---------------------------------------------------- 297 (488)
.. -....+.. ..++|.|+.-+...+
T Consensus 286 qp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 286 QP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred Cc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 44 22222211 134444443321110
Q ss_pred ---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcC----ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011316 298 ---KKSIKKEACWTISNITAGNVNQIQAIIEAG----IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG 370 (488)
Q Consensus 298 ---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~----~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 370 (488)
++.+|+-.+.+|.-++ .++... ++|.|-+.|.++++.+|+.+.-||+.++.++-....+.|-+
T Consensus 365 ~~~dWNLRkCSAAaLDVLa--------nvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe-- 434 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLA--------NVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE-- 434 (885)
T ss_pred ccccccHhhccHHHHHHHH--------HhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH--
Confidence 0223433333333222 222223 45555555666789999999999999999876555566543
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 450 (488)
+++.|+.+|.++.+-||...+|.|++....--..+... -+...+. -+..-.-+.|.+||++|......
T Consensus 435 Lip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~------~f~pvL~------~ll~~llD~NK~VQEAAcsAfAt 502 (885)
T KOG2023|consen 435 LIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDE------YFKPVLE------GLLRRLLDSNKKVQEAACSAFAT 502 (885)
T ss_pred HHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHh------hhHHHHH------HHHHHHhcccHHHHHHHHHHHHH
Confidence 78999999999999999999999998865433322100 0233332 23333445689999999998887
Q ss_pred hcCC
Q 011316 451 YWVE 454 (488)
Q Consensus 451 ~~~~ 454 (488)
+-++
T Consensus 503 leE~ 506 (885)
T KOG2023|consen 503 LEEE 506 (885)
T ss_pred HHHh
Confidence 6543
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=99.49 E-value=1.6e-10 Score=117.22 Aligned_cols=370 Identities=13% Similarity=0.113 Sum_probs=221.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
.+.+++++.+++..++....-.+.+.+... ++.. + -++..|.+=+++++ +.+|..|+++++++-. ++..+.
T Consensus 70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela--l---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~ 140 (746)
T PTZ00429 70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA--L---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY 140 (746)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH--H---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH
Confidence 444566666666666666666666654432 2211 1 13566777777887 8889888888888765 333333
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011316 112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 112 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 191 (488)
+ ++.+.+.+.+.++-+|..|+.++..+...+++ .+.+.+.++.+.+++ .+.|+.|+.+|+.+|..+....+
T Consensus 141 l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 141 T-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred H-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCc
Confidence 3 56777888889999999999999998776553 344556777888877 78899999999999999987654
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 192 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
. ......+.+..++..+..-++..+...+.+|......++... ..++..+...|.+.++.|...|+.++.++..
T Consensus 212 ~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 212 E-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred h-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 2 233445666677777766677778888888765433222221 2567788888999999999999999998876
Q ss_pred CC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-------------------------
Q 011316 272 GD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE------------------------- 325 (488)
Q Consensus 272 ~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------------------------- 325 (488)
.. +.....+.. .+...++.++ ++ ++.+|..++..+.-++...+.....-++
T Consensus 286 ~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lan 362 (746)
T PTZ00429 286 RCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVT 362 (746)
T ss_pred cCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcC
Confidence 42 222222211 2234455554 34 5677877777776665543432211100
Q ss_pred ----cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 326 ----AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 326 ----~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
..++..|.....+.+.+++..++.+++.++..-. .... .++..|.++++.... +...++.++.+++...
T Consensus 363 e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrky 435 (746)
T PTZ00429 363 PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDIVRKY 435 (746)
T ss_pred cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHHHHHC
Confidence 0123333333444455566666666666654321 1111 245566665554332 2334455555554432
Q ss_pred hhhhccCCCCccchHHHHHHhhccHHHHHHh---hcCCCHHHHHHHHHHHHHhcCC
Q 011316 402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENL---QSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l---~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
+. .. .+..|... ..-.+++.+....|++.+|-+.
T Consensus 436 P~-------------~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~ 472 (746)
T PTZ00429 436 PE-------------LL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF 472 (746)
T ss_pred cc-------------HH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh
Confidence 21 00 12222221 1234566777778888888653
No 38
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.46 E-value=2e-10 Score=108.27 Aligned_cols=322 Identities=14% Similarity=0.184 Sum_probs=229.6
Q ss_pred CCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhc-----CChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 116 GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 116 g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+..++.++.. ..+++.+..+..+..+....+.....+.+. ....+++.++ ...|..+...++..+..+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence 456777777765 678899999999999988877665555553 4567788888 567888999999999998876
Q ss_pred CCCCCh-hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHH
Q 011316 190 KPQPLF-EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT 265 (488)
Q Consensus 190 ~~~~~~-~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~ 265 (488)
.+.... ......++.+...++++ +...+..++.++..+...+..+ ..+.+.++++.|+.+|+.. ..+.+..++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 532211 12233455666666654 4677778889999998877644 6677888999999999763 45788999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC------HHHHHHHHHcCChHHHHHHHhcC
Q 011316 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------VNQIQAIIEAGIIGPLVNLLLNA 339 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~l~~L~~ll~~~ 339 (488)
++-++...+ ........++++.++++++....+++-+-++.++.|+...+ ......+++.|+.+.+-.+-..+
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 999998544 44555577999999999988778899999999999999842 22334566766666554444333
Q ss_pred --ChhHHHHHHH-------HHHHhccCC------------------C----HHHHHHHHHC--CChHHHHhhcC-CCCHH
Q 011316 340 --EFEIKKEAAW-------AISNATSGG------------------S----NEQIKFLVSQ--GCIKPLCDLLN-CPDPR 385 (488)
Q Consensus 340 --~~~v~~~a~~-------aL~~l~~~~------------------~----~~~~~~l~~~--~~~~~L~~ll~-~~~~~ 385 (488)
|+++....-. -+..+++.. + .++...+-+. .++..|.++|+ +.|+.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~ 369 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI 369 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence 5554322111 111122100 1 1223334343 34788888885 56777
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
+...|+.=++.+++.-+.. +..+...|+-+.+.++++|+|++|+..|..+++++.
T Consensus 370 ~laVAc~Dige~vr~~P~g------------r~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 370 ILAVACHDIGEYVRHYPRG------------KDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eeehhhhhHHHHHHHCccH------------HHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8888888888888876543 677889999999999999999999999999998864
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.46 E-value=6.4e-10 Score=112.89 Aligned_cols=294 Identities=14% Similarity=0.093 Sum_probs=207.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
|-+..|-+.|.+.+...+..+++.+....... .+.. .+++..++++.+++ .++|..+...+.+++...++..
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela 103 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA 103 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence 56777888899988888888888777665543 3322 35677788888888 8999999989999988666543
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
-. .++.+.+-+.++++.+|..|+++++++-. +...+. .+..+.+.+ .+.++-||+.|+.++.++...
T Consensus 104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence 22 37888888999999999999999999843 222222 345666667 788999999999999999876
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
.+ ......++++.+.+++.+.++.|...|+.+|..+....++... ...+.+..++..+..-++..+...+.+|...
T Consensus 171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y 246 (746)
T PTZ00429 171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ 246 (746)
T ss_pred Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence 54 2334457888999999999999999999999999876554322 2235567777777776777777777777553
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
.-.++... ..++..+...|++. ++.|...|+.++.++... +++....... .+-+.++.+ .+++++++..++
T Consensus 247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaL 318 (746)
T PTZ00429 247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVC 318 (746)
T ss_pred CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHH
Confidence 32222111 24677888889998 899999999999988763 2333333222 123444544 334566666666
Q ss_pred HHHHHhcc
Q 011316 349 WAISNATS 356 (488)
Q Consensus 349 ~aL~~l~~ 356 (488)
..+.-++.
T Consensus 319 r~I~~i~~ 326 (746)
T PTZ00429 319 KNIHALLV 326 (746)
T ss_pred HHHHHHHH
Confidence 66655544
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.45 E-value=2.6e-12 Score=102.11 Aligned_cols=119 Identities=35% Similarity=0.621 Sum_probs=110.1
Q ss_pred HHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC
Q 011316 68 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147 (488)
Q Consensus 68 ~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~ 147 (488)
.+++.|+++.++++|++++ ++++..++++|.+++...++.+..+.+.|+++.++.++.++++.++..++++|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3567899999999999998 899999999999999977999999999999999999999999999999999999999988
Q ss_pred chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 148 ~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+.....+.+.|.++.+++.+ .+.+..++..++++|.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77788888899999999999 66688999999999999873
No 41
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.44 E-value=8.9e-11 Score=111.98 Aligned_cols=360 Identities=17% Similarity=0.163 Sum_probs=240.1
Q ss_pred hcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011316 82 LSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 159 (488)
Q Consensus 82 L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 159 (488)
+.+.+ |+....|..-..|.+.+.++.+..+++.|.++.++.++.. +.++.......++..++.........+.+.+.
T Consensus 18 L~~~d-pe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ 96 (678)
T KOG1293|consen 18 LLHLD-PEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIE 96 (678)
T ss_pred hhcCC-HHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhh
Confidence 34455 6777788888888888888888889999999999999876 56777777788888888777777788889999
Q ss_pred hHHHHHHhccccc-HhHHHHHHHHHHHhhcCCCCC---ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH
Q 011316 160 LMPLLAQFNEHAK-LSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 235 (488)
Q Consensus 160 i~~l~~~l~~~~~-~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 235 (488)
++.+++++ .++| ..++.....++.++....+.. .......+++.+..++..+...+...-+....+++... +..
T Consensus 97 ll~Ll~LL-s~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq 174 (678)
T KOG1293|consen 97 LLKLLQLL-SESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQ 174 (678)
T ss_pred HHHHHHHh-cCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhh
Confidence 99999999 5555 789999999999998876333 33334556666665555344444444555555555444 333
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh---HhhcCCchhhHHHh----hCCChH--HHHHHhcccc---------
Q 011316 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVG---NIVTGDDMQTQCII----NHQALP--CLLDLLTQNY--------- 297 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~---~l~~~~~~~~~~~~----~~~~~~--~L~~lL~~~~--------- 297 (488)
....+.|+.+.+.-++..-+...|..|+.+++ ++...++.....+. +.++.+ .+.+++++++
T Consensus 175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~ 254 (678)
T KOG1293|consen 175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE 254 (678)
T ss_pred heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence 44566677777777766666677777777777 55544332222111 112211 1111111110
Q ss_pred --------------------------------------------------------------------------------
Q 011316 298 -------------------------------------------------------------------------------- 297 (488)
Q Consensus 298 -------------------------------------------------------------------------------- 297 (488)
T Consensus 255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ell 334 (678)
T KOG1293|consen 255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELL 334 (678)
T ss_pred HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHH
Confidence
Q ss_pred -------------------------------------------------------hhhHHHHHHHHHHHHhcCCHHHHHH
Q 011316 298 -------------------------------------------------------KKSIKKEACWTISNITAGNVNQIQA 322 (488)
Q Consensus 298 -------------------------------------------------------~~~v~~~a~~~L~nl~~~~~~~~~~ 322 (488)
+...+..|+.++.++++.-...+..
T Consensus 335 f~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg 414 (678)
T KOG1293|consen 335 FICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG 414 (678)
T ss_pred HHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 0111111122222221110000001
Q ss_pred HHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 323 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 323 l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
+-...+...|++++..++..++..++.+++|+.-.-+ .....+++.|+++.+..++.+++..++..++|+|++++-.++
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d 493 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD 493 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch
Confidence 1124578889999988899999999999999986543 456778899999999999999999999999999999976555
Q ss_pred hhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 011316 403 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED 456 (488)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 456 (488)
... ...+-.-=+...|..+.++++..|++.+..+++++.-..+
T Consensus 494 e~~-----------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 494 EEE-----------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHH-----------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 432 2222222235778999999999999999999999877633
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.44 E-value=6.4e-11 Score=111.48 Aligned_cols=323 Identities=11% Similarity=0.073 Sum_probs=228.2
Q ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHH-----cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 011316 31 SLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQ-----SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 104 (488)
Q Consensus 31 ~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~ 104 (488)
....++.+|+ ...+++....+..+..++... +.....+.+ .+....++++|+.++ .-+...|+.+++.+...
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence 3455677776 466888888899999988865 444555554 356778888998887 79999999999999874
Q ss_pred CchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-cHhHHHHHHHH
Q 011316 105 TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWT 182 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~v~~~a~~~ 182 (488)
.+.........-.++.+...+++ .+...+..++.++..+....+ +|..+.+.++++.|+..+.... +.+++..++.+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 44322211111123445555554 357888889999999987655 7888888889999999996544 67899999999
Q ss_pred HHHhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCc------hhHHHHHHhCCHHHHHHhcCC--
Q 011316 183 LSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLRH-- 253 (488)
Q Consensus 183 L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~-- 253 (488)
++-++...+........+.++.++++++. ..+++..-++.++.|+...+. .....++..|+++.+-.+...
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 99998886544444457899999999985 578999999999999997531 223445665665545444433
Q ss_pred CCcchHhHHHH-------HHhHhhcC--------------Cch---------hhHHHhh--CCChHHHHHHhcccchhhH
Q 011316 254 PSPSVLIPALR-------TVGNIVTG--------------DDM---------QTQCIIN--HQALPCLLDLLTQNYKKSI 301 (488)
Q Consensus 254 ~~~~v~~~a~~-------~L~~l~~~--------------~~~---------~~~~~~~--~~~~~~L~~lL~~~~~~~v 301 (488)
.++++....-. .+..++.. +|. ....+-+ ..++..|.++|..+.++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 34444322111 11112110 111 1122222 2357888999965547888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
..-||.-++.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999878878777788999999999999999999999999998864
No 43
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=4.6e-11 Score=115.43 Aligned_cols=360 Identities=15% Similarity=0.110 Sum_probs=238.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHH
Q 011316 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVV 112 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~ 112 (488)
.+++.|++..|...-.|+.++..++.-+ -+.- ...++++.|+....++....+++.++.+++-+|.+- |+ ...-
T Consensus 94 ~il~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n---~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~ 168 (859)
T KOG1241|consen 94 NILRTLGSPEPRRPSSAAQCVAAIACIE-LPQN---QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQ 168 (859)
T ss_pred HHHHHcCCCCCCccchHHHHHHHHHHhh-Cchh---hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHH
Confidence 4677777777877778888888887765 1111 123455666666655553469999999999999843 33 2222
Q ss_pred HhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316 113 IDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 113 ~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
..+.++..++.-.+. ++..+|-.|+.+|.|-.+.....-..-.+.+.+-..+--.-+++|.+++..|..+|..+..-.
T Consensus 169 ~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly 248 (859)
T KOG1241|consen 169 QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY 248 (859)
T ss_pred HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH
Confidence 234677777776665 788999999999998654322121222233333333322337789999999999999987654
Q ss_pred CCCChhhh-hchHHHHHHhhccCChhHHHHHHHHHHHhccCCch---------------hHHHHHH---hCCHHHHHHhc
Q 011316 191 PQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDGTND---------------KIQAVIE---AGVCPRLVELL 251 (488)
Q Consensus 191 ~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~---------------~~~~~~~---~~~l~~L~~lL 251 (488)
...-...+ ...+..-+..+++++++|...++..-++++...-+ ....+.+ .+++|.|+++|
T Consensus 249 Y~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L 328 (859)
T KOG1241|consen 249 YEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELL 328 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHH
Confidence 11111222 33555566677899999999999999988853221 0011111 15678888888
Q ss_pred CC-------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011316 252 RH-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 252 ~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
.+ .++.....|-.||.-++...... ++. .+++.+-.-++++ +++-|..|+.+++.+..+.......-+
T Consensus 329 ~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~i 403 (859)
T KOG1241|consen 329 TKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPI 403 (859)
T ss_pred HhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHH
Confidence 54 23567777777777766532221 222 4555555667788 999999999999999986444444444
Q ss_pred HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011316 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 325 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 404 (488)
..+.+|.++.++.++...++..+.|+|+.++................+..+.+-+. +.|.+..+++|++.++.+...+.
T Consensus 404 V~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA 482 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEA 482 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHh
Confidence 55799999999998888899999999999997654333333333455666666555 46788899999999998655443
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.41 E-value=5.9e-12 Score=100.06 Aligned_cols=118 Identities=34% Similarity=0.507 Sum_probs=109.9
Q ss_pred HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH
Q 011316 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 317 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 317 (488)
+.+.|+++.+++++.+.++.++..++++|++++...+.....+.+.++++.+.+++.++ ++.++..++++|+|++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999998888888888999999999999998 99999999999999999877
Q ss_pred HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 318 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 318 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.....+.+.|+++.+++++...+..+++.++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 778888899999999999999999999999999999863
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.4e-10 Score=110.64 Aligned_cols=343 Identities=14% Similarity=0.168 Sum_probs=248.6
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
..+|.|+.+|+. .+.++...|+++|..+..-- +.....+++.++||.|+.-|..-.+-++.++++.+|-.|+...
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--- 286 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--- 286 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---
Confidence 457889999986 57999999999999987765 5667788899999999998888777899999999999998833
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
-..+.+.|.+...+.++.--+...++.|+.+..|.|..- ++--..+++ .++.|..+| ...|....+.++.++..++
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence 356778899999999998888999999999999998532 122234444 788888888 7778888999999999988
Q ss_pred cCC-CCC---ChhhhhchHHHHHHhhccC----ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC----
Q 011316 188 RGK-PQP---LFEQTRPALPALERLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---- 255 (488)
Q Consensus 188 ~~~-~~~---~~~~~~~~~~~L~~ll~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---- 255 (488)
... +.. ......+.+..+.+++.-. +..+....++.+..++.+.+.....+.+.++...+..+|...+
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n 443 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN 443 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence 765 222 2233467888888887643 3455667777888888887777777777787777777764311
Q ss_pred ----------cchHhHHHHHHhHh------------------------------------------------hc------
Q 011316 256 ----------PSVLIPALRTVGNI------------------------------------------------VT------ 271 (488)
Q Consensus 256 ----------~~v~~~a~~~L~~l------------------------------------------------~~------ 271 (488)
|.-.......+..+ ..
T Consensus 444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~ 523 (1051)
T KOG0168|consen 444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT 523 (1051)
T ss_pred cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence 00000000000000 00
Q ss_pred --------------------CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcC-Ch
Q 011316 272 --------------------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAG-II 329 (488)
Q Consensus 272 --------------------~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~-~l 329 (488)
..++..+.+.. .+++.|+++..+..++.||+.++.+|..+.. .+.+.+..++... +-
T Consensus 524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS 602 (1051)
T KOG0168|consen 524 GTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS 602 (1051)
T ss_pred ccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence 00111111111 4678888888887799999999999999988 6788888887644 44
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011316 330 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 330 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~ 380 (488)
..+-.+|.+++..+..-|+...--++..-..-+...+...|++..+-++..
T Consensus 603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 566678888888887777777777776555556677778888888888766
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.4e-09 Score=105.49 Aligned_cols=329 Identities=14% Similarity=0.144 Sum_probs=220.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+|.+-+.++++|-.-+..|+.++..++.+. .+....-+..+++|.+++++.++. .-++..++|+|+.++...++.+.
T Consensus 365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~ 442 (859)
T KOG1241|consen 365 VLPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAII 442 (859)
T ss_pred hHHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhcc
Confidence 4566666888999999999999999998875 444555556789999999999887 78999999999999997765443
Q ss_pred H-HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh-----HHHHHhcCChHHHHHHhc------ccccHhHHHH
Q 011316 111 V-VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-----RDLVLSNGALMPLLAQFN------EHAKLSMLRN 178 (488)
Q Consensus 111 ~-~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~~~~i~~l~~~l~------~~~~~~v~~~ 178 (488)
- ....+.++.++.-|. +.|.+..+++|++.+|+..-++. ...... ...+.++.-|. +.....+|..
T Consensus 443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~A 520 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSA 520 (859)
T ss_pred cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHH
Confidence 2 223344555555554 46899999999999998321110 000111 23334443332 2235578899
Q ss_pred HHHHHHHhhcCCCCCChhhhhchHHHHHHhh----c-----cCC----hhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011316 179 ATWTLSNFCRGKPQPLFEQTRPALPALERLI----H-----SND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 245 (488)
Q Consensus 179 a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----~-----~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 245 (488)
+..+|..+....+........+....+..-| + ..+ .+++...+.+|..+.+.....+..+.+ .++.
T Consensus 521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~ 599 (859)
T KOG1241|consen 521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMG 599 (859)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHH
Confidence 9999999998886666555555555444422 1 111 356667777777776544433343443 5778
Q ss_pred HHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011316 246 RLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 246 ~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
.+++++.+ .+..+.+.|+.+++.++..-.......+. .+.|.|..-|++..+..|...|...++.+++.-.+.+....
T Consensus 600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~-~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~ 678 (859)
T KOG1241|consen 600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP-AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC 678 (859)
T ss_pred HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 88888887 45567888888888888754443333333 57788888886655888999999999999885344444433
Q ss_pred HcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHH
Q 011316 325 EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFL 366 (488)
Q Consensus 325 ~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l 366 (488)
+ +++..|+..|+++ +.+||-..+.+++.++.....+..+++
T Consensus 679 d-~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl 721 (859)
T KOG1241|consen 679 D-ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYL 721 (859)
T ss_pred H-HHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHH
Confidence 3 4788888888887 566777777777777765444444443
No 47
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.28 E-value=1.5e-09 Score=104.77 Aligned_cols=388 Identities=14% Similarity=0.165 Sum_probs=249.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~ 108 (488)
..+.+++..++++.+..+..++....++...-+....+.-.++-.+..++..++..+. ..+-......+.+-...
T Consensus 716 ~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~---- 791 (1172)
T KOG0213|consen 716 PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG---- 791 (1172)
T ss_pred HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh----
Confidence 3466778888899999999999998888776544444554555667777777766542 22333333333332221
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH--HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD--LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l 186 (488)
|-+-.-.-++..++..|++.++.+|..++..++.++..-..+.+ .+-..|. .|...| ....+++.-..+.++..+
T Consensus 792 r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI 868 (1172)
T KOG0213|consen 792 RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI 868 (1172)
T ss_pred ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence 11111123467778889999999999999999998743222211 2222222 355666 677888888888888877
Q ss_pred hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011316 187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
.... -.....-..+++|.|..+|++...+++++++..++.++...++....---..+.--|+.+|...+.++|++|..+
T Consensus 869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7654 222333457899999999999999999999999999998776543321112334446677777778899999998
Q ss_pred HhHhhcCCc--hhhHH---------------------Hh-h-C---CChHHHHHHhcccchhhHHHHHHHHHHHHhcC-C
Q 011316 266 VGNIVTGDD--MQTQC---------------------II-N-H---QALPCLLDLLTQNYKKSIKKEACWTISNITAG-N 316 (488)
Q Consensus 266 L~~l~~~~~--~~~~~---------------------~~-~-~---~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~ 316 (488)
++.++..-. +.... ++ + + .++|.|+.=-..+ +..|+...+.+++.+... .
T Consensus 949 fG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen 949 FGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred hhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHH
Confidence 888875311 00000 00 1 1 2345555545566 777888888888877652 1
Q ss_pred HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-------CCCHHHHHH
Q 011316 317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-------CPDPRIVTV 389 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-------~~~~~v~~~ 389 (488)
....+++.. +.|.|-..|.+.|..-|+.|+.++.+++.+..- .|..+.++.+|+ ++.|.++..
T Consensus 1028 emskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g--------~g~eda~iHLLN~iWpNIle~sPhviqa 1097 (1172)
T KOG0213|consen 1028 EMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG--------TGCEDALIHLLNLIWPNILETSPHVIQA 1097 (1172)
T ss_pred HHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC--------cCcHHHHHHHHHHhhhhhcCCChHHHHH
Confidence 222333333 688888888888999999999999999876421 244444444443 456777777
Q ss_pred HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316 390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
..+++..+-.. +...-.++.+.+-+=|+...|++....+.+.++-.
T Consensus 1098 ~~e~~eg~r~~-------------------Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~ 1143 (1172)
T KOG0213|consen 1098 FDEAMEGLRVA-------------------LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHG 1143 (1172)
T ss_pred HHHHHHHHHHH-------------------hchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhc
Confidence 76666655322 22222355666667788889998888888776544
No 48
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=3.7e-08 Score=95.17 Aligned_cols=220 Identities=15% Similarity=0.172 Sum_probs=163.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.-+.++.+|.+.-+-+|..|+-.+.++.-.- ++..+ ..+|.|++-|.+++ |.++-.|+.+++.++..+|.+.
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccc
Confidence 55667889999999999999999999876554 22222 46899999999999 9999999999999999888765
Q ss_pred HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
-.+ -|.+.++|.. .+.=+.-..+..+++|+.-.|...+. .++++..++....-.++...++.++.....
T Consensus 217 L~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 217 LQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred ccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 543 4777887765 34444455778888888777765444 578999999544445566666655543322
Q ss_pred CCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316 189 GKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 189 ~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
... ........-+++.|-.++.+.|+.++.-.+.+++.+....+...+ ..-+.++++|.+.++++|..|+..+.
T Consensus 287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHH
Confidence 111 133344456777888888899999999999999999977665544 33477899999999999999999998
Q ss_pred Hhhc
Q 011316 268 NIVT 271 (488)
Q Consensus 268 ~l~~ 271 (488)
.+..
T Consensus 362 gmVs 365 (877)
T KOG1059|consen 362 GMVS 365 (877)
T ss_pred HHhh
Confidence 8875
No 49
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.19 E-value=7e-08 Score=87.99 Aligned_cols=322 Identities=15% Similarity=0.175 Sum_probs=219.4
Q ss_pred CHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHH------HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 117 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLV------LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 117 ~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~------~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+..++.+++. ..++....++..+..+-..++.....+ .....-...+.++ ...+.-+.....+.++.++..
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence 45677777776 456666777777776655443221111 1122355677777 566677777788999888876
Q ss_pred CCCCChh-hhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-C-CCcchHhHHHHH
Q 011316 190 KPQPLFE-QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-H-PSPSVLIPALRT 265 (488)
Q Consensus 190 ~~~~~~~-~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~-~~~~v~~~a~~~ 265 (488)
....... ...-....+...+.+ .+......+.+||..+...++.+. .++..+++..++..+. + .+-.++...+.|
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~-~~v~adg~~~l~~~l~s~~~~~QlQYqsifc 223 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY-AFVIADGVSLLIRILASTKCGFQLQYQSIFC 223 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh-eeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence 6322222 223344455556655 577788889999999998876554 4555677788888773 3 456888999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH------HHHHHHHHcCChHHHHHHHhcC
Q 011316 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV------NQIQAIIEAGIIGPLVNLLLNA 339 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~------~~~~~l~~~~~l~~L~~ll~~~ 339 (488)
++.|+. ++...+.+...+.++.|..++++...++|-+-.+.++.|+....+ +....++..++.+.+-.+-+.+
T Consensus 224 iWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk 302 (442)
T KOG2759|consen 224 IWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK 302 (442)
T ss_pred HHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence 999988 455556667789999999999988788899999999999998653 4445566777777665555544
Q ss_pred --ChhHHHHHHH-------HHHHhccCC-------------C---------HHHHHHHHHC--CChHHHHhhcCCCC-HH
Q 011316 340 --EFEIKKEAAW-------AISNATSGG-------------S---------NEQIKFLVSQ--GCIKPLCDLLNCPD-PR 385 (488)
Q Consensus 340 --~~~v~~~a~~-------aL~~l~~~~-------------~---------~~~~~~l~~~--~~~~~L~~ll~~~~-~~ 385 (488)
|+++....-. ....+++.. + .++...+.+. .+++.|+.+|+.++ |.
T Consensus 303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~ 382 (442)
T KOG2759|consen 303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPI 382 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence 5544322221 112222110 0 1223333333 35888888888654 77
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+...|+.=++.++..-+.. +..+...||-+.+.++++++|++|+..|...+.++..
T Consensus 383 iL~VAc~DIge~Vr~yP~g------------k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 383 ILCVACHDIGEYVRHYPEG------------KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred eeehhhhhHHHHHHhCchH------------hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 7788888888888877643 7889999999999999999999999999998887643
No 50
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.18 E-value=4e-09 Score=95.89 Aligned_cols=280 Identities=13% Similarity=0.091 Sum_probs=203.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
.+..+..|...+.-+...+.+.+..+++.. +.........=....|...++++.+++...-|++||..+.. -++.|..
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence 667888999999888888999999988765 22221111111234455566664447888889999999998 8999999
Q ss_pred HHhCCCHHHHHHhh-CC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 112 VIDHGAVPIFVRLL-SS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 112 ~~~~g~i~~L~~lL-~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
++..+++..++..+ ++ .+..++-..+.+++.++.+++. .+.+...+.++.+...+..+..+.|.+-++.++.|++..
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99988899999988 33 6789999999999999877654 466677889999999998888999999999999999987
Q ss_pred CCCCCh------hhhhchHHHHHHhhcc---CChhHHHHHHHHHH-------HhccC---------------Cch-----
Q 011316 190 KPQPLF------EQTRPALPALERLIHS---NDDEVLTDACWALS-------YLSDG---------------TND----- 233 (488)
Q Consensus 190 ~~~~~~------~~~~~~~~~L~~ll~~---~~~~v~~~al~~L~-------~l~~~---------------~~~----- 233 (488)
.+.... .....-++..++.|.. .|+++....-..-. .++.- +..
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 742221 1123334444455543 24544433222211 11111 111
Q ss_pred ---hHHHHHHh--CCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHH
Q 011316 234 ---KIQAVIEA--GVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 307 (488)
Q Consensus 234 ---~~~~~~~~--~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~ 307 (488)
+...+.+. .++..|+.+|+.+ +|.+..-|+.=++...++.|+....+.+.|+-+.++++++++ +++||.+|+.
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl 431 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL 431 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence 11112221 4788899999775 588889999999999999999999888999999999999999 9999999999
Q ss_pred HHHHHhcC
Q 011316 308 TISNITAG 315 (488)
Q Consensus 308 ~L~nl~~~ 315 (488)
++..+..+
T Consensus 432 avQ~lm~~ 439 (442)
T KOG2759|consen 432 AVQKLMVH 439 (442)
T ss_pred HHHHHHhh
Confidence 98877653
No 51
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.4e-08 Score=97.75 Aligned_cols=372 Identities=16% Similarity=0.200 Sum_probs=218.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+..|.+.+.|++.++-+|..|+-+..++..+. ++.. +.+++...++|.+.+ +-+...++..+..+|..+++..
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~-----e~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLV-----EHFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHH-----HHhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHH
Confidence 55667777777788888888887777776654 2222 235566667777777 6777777777777777666655
Q ss_pred HHHHhCCCHHHHHHhhCC---------------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--c
Q 011316 110 RVVIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--K 172 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~ 172 (488)
..+.+ .++.|+..|+. ++|-++...++.|.-+-.+++...+.+-+ ++..+..--..+. -
T Consensus 215 ~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~G 290 (866)
T KOG1062|consen 215 SYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAG 290 (866)
T ss_pred HHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccch
Confidence 55543 44444444421 46777888888888777776654444322 1111111110001 1
Q ss_pred HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC
Q 011316 173 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 252 (488)
Q Consensus 173 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 252 (488)
..+...++.++..+-.+. ....-++..|-++|.+.|..++.-++..|..+...++...+. .=..++++|+
T Consensus 291 nAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~ 360 (866)
T KOG1062|consen 291 NAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLK 360 (866)
T ss_pred hHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhc
Confidence 234444555554443322 122345666777777888888888888888888777654442 2256788899
Q ss_pred CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHH------H-
Q 011316 253 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAI------I- 324 (488)
Q Consensus 253 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l------~- 324 (488)
+++..+++.|+..+..+... ...+. .+..++..|.+. +++.|...+.-+..++.. .++.+..+ +
T Consensus 361 DpD~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~ 432 (866)
T KOG1062|consen 361 DPDVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLK 432 (866)
T ss_pred CCcHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 99999999999888777753 33332 355678888777 888888888888877762 23322221 1
Q ss_pred ------HcCChHHHHHHHhcC-------------------------ChhHHHHHHHHHHHhc----cCCCHHHHHHHHHC
Q 011316 325 ------EAGIIGPLVNLLLNA-------------------------EFEIKKEAAWAISNAT----SGGSNEQIKFLVSQ 369 (488)
Q Consensus 325 ------~~~~l~~L~~ll~~~-------------------------~~~v~~~a~~aL~~l~----~~~~~~~~~~l~~~ 369 (488)
...++..+++++.+. .+.+.+-|.|+++.-. .+...+.-...-+.
T Consensus 433 ~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtes 512 (866)
T KOG1062|consen 433 TAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTES 512 (866)
T ss_pred hcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHH
Confidence 233566666666654 1223444555554432 11000111112234
Q ss_pred CChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHH
Q 011316 370 GCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 447 (488)
Q Consensus 370 ~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~ 447 (488)
.++..|.+++.+ .+..++..++.++.++........ +.+ -+.+..+-.+-+-++|++|...
T Consensus 513 divd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~------------~ri-----~~lI~~~~~s~~~elQQRa~E~ 575 (866)
T KOG1062|consen 513 DIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSS------------ERI-----KQLISSYKSSLDTELQQRAVEY 575 (866)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccH------------HHH-----HHHHHHhcccccHHHHHHHHHH
Confidence 567777777663 456778888888888765544211 111 1234445566677787777653
No 52
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=6.8e-08 Score=94.33 Aligned_cols=326 Identities=14% Similarity=0.179 Sum_probs=240.9
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCc--
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSP-- 148 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~-- 148 (488)
..|+.|+.-..+..-.+-|..|++.|..+++ ++|..+...| +++|+..|+. .++++...++.++.++..+.+
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 3578888888777667889999999999987 7888887766 8999999987 689999999999999986542
Q ss_pred ----h----------hHHH-HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhc
Q 011316 149 ----K----------CRDL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIH 210 (488)
Q Consensus 149 ----~----------~~~~-~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~L~~ll~ 210 (488)
. +.+. +...+.+..++..+ ...|-.||..++..+.++....+.... .....++..++.+|+
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 1 1112 33445677777777 777889999999999999887743322 233678999999999
Q ss_pred cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC----cchHhHHHHHHhHhhcCCchhhHHHhhCCCh
Q 011316 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQAL 286 (488)
Q Consensus 211 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 286 (488)
+....+|..++..|..++..++...+.+.-.+++..|+.++..+. .-|...++..|.|+...+......+.+.+.+
T Consensus 177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i 256 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI 256 (970)
T ss_pred hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence 999999999999999999988766565555689999999997632 3578889999999999888888888899999
Q ss_pred HHHHHHhcccc--h-----h---hH--HHHHHHHHHHHhc-CCH-----HHHHHHHHcCChHHHHHHHhcC--ChhHHHH
Q 011316 287 PCLLDLLTQNY--K-----K---SI--KKEACWTISNITA-GNV-----NQIQAIIEAGIIGPLVNLLLNA--EFEIKKE 346 (488)
Q Consensus 287 ~~L~~lL~~~~--~-----~---~v--~~~a~~~L~nl~~-~~~-----~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~ 346 (488)
+.|.++|.... + + ++ ...++.++..++. +++ .+...+...+++..|+.++.++ ..+++..
T Consensus 257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte 336 (970)
T KOG0946|consen 257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE 336 (970)
T ss_pred HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence 99998874321 1 1 11 2356666676766 222 2224566789999999999887 5578899
Q ss_pred HHHHHHHhccCCCHHHHHHHHHCC----------ChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhh
Q 011316 347 AAWAISNATSGGSNEQIKFLVSQG----------CIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 347 a~~aL~~l~~~~~~~~~~~l~~~~----------~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~ 404 (488)
+..+++++..++. ..-..+.... ++-.++.+..+ .....|.+++.++..++..+...
T Consensus 337 siitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 337 SIITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 9999999988653 2233333211 12233333333 34578888888988887666544
No 53
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.4e-08 Score=91.23 Aligned_cols=188 Identities=20% Similarity=0.232 Sum_probs=157.5
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 292 (488)
Q Consensus 213 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 292 (488)
+.+-+..++.-|..++..-++ ...+++.|++..++..+++.+..+|..|+++|+.++..++.....+++.++++.|+.+
T Consensus 96 ~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDN-ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 566677888888888876654 3568888999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011316 293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQG 370 (488)
Q Consensus 293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 370 (488)
+.+..+..+|..|+++++++.++++.....+...+.+..|...++++ +..++..++..+..++.... .....+...+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~~ 253 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSLG 253 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHhh
Confidence 98876788899999999999998888888888888899999999994 77788999999999987542 2333445557
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
....+..+....+.++.+.++.++..++..-.
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 77777778788888888888887777665433
No 54
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.8e-09 Score=94.88 Aligned_cols=184 Identities=18% Similarity=0.212 Sum_probs=153.6
Q ss_pred ChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011316 87 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 166 (488)
Q Consensus 87 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~ 166 (488)
+.+-++.|+.-|..++. +-++...+...|++..++..+++.+..+|+.|+++|+..+.++|..+..+++.|+++.|+..
T Consensus 96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 37889999999999998 77888899999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011316 167 FNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 243 (488)
Q Consensus 167 l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 243 (488)
+..+.+..++..|+.+++.+.++. +........++...|...+.+ .+...+..++..+..+..........+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 977777889999999999999988 444444445669999999998 56788899999999998766544443444455
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 244 CPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
...+..+....+.++.+.++.++..+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 5666666666777888888877766655
No 55
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.2e-07 Score=93.30 Aligned_cols=331 Identities=15% Similarity=0.170 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHhccCCCccHH----HHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHH
Q 011316 45 NIQLDATTQFRKLLSIERSPPIN----EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 120 (488)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~~~----~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 120 (488)
.-...++.+|.++++.. ++... +..--|.++.+..++.....+.++..|+.++..+.. +.++...++..|.+..
T Consensus 1740 ~~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence 34557899999998875 33322 222347788888888776558999999999988887 8899999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC---CCCChhh
Q 011316 121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQ 197 (488)
Q Consensus 121 L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~ 197 (488)
|+.+|++ -|..|+.++.+|+.+++... .....++.|++..+..++..+++++.+.+++..+..+..++ |...+..
T Consensus 1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 9999977 57889999999999987654 56677788999999999888889999999999999998876 3333333
Q ss_pred hhchHHHH-----------HHhhcc--CChh------HHHHHHHHHHHhccC-------Cc-------hh----------
Q 011316 198 TRPALPAL-----------ERLIHS--NDDE------VLTDACWALSYLSDG-------TN-------DK---------- 234 (488)
Q Consensus 198 ~~~~~~~L-----------~~ll~~--~~~~------v~~~al~~L~~l~~~-------~~-------~~---------- 234 (488)
+.-.-..+ +.++.. ++++ .+...-..+..+... ++ ++
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence 32222233 333332 2222 223333333333210 00 00
Q ss_pred --------HHHH------------HHhCCHHHHHHhcCCCCcc--hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316 235 --------IQAV------------IEAGVCPRLVELLRHPSPS--VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 292 (488)
Q Consensus 235 --------~~~~------------~~~~~l~~L~~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 292 (488)
...+ +-.++++.+.+++..+.++ ....-..++..+.+..+....++-..|.++.++..
T Consensus 1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 0000 1113566666666654432 22223334445556677777777788999999999
Q ss_pred hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCCh
Q 011316 293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 372 (488)
Q Consensus 293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~ 372 (488)
+... +..+-..|+++|..++.+ .-..+.+.....+..++..+... .....-|+.+|..+......+...+....|++
T Consensus 2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 8777 666778999999999875 55666676666677777776664 44556899999999887766777777888999
Q ss_pred HHHHhhcCCC
Q 011316 373 KPLCDLLNCP 382 (488)
Q Consensus 373 ~~L~~ll~~~ 382 (488)
+.|.++|+..
T Consensus 2133 pyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2133 PYLLQLLDSS 2142 (2235)
T ss_pred HHHHHHhccc
Confidence 9999999853
No 56
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.10 E-value=2.5e-09 Score=101.27 Aligned_cols=400 Identities=13% Similarity=0.106 Sum_probs=235.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+..+++.++.+.+..+..++.....+.+.-+....++-.++..+..++..++..+. .+. ..+.+++.+.. +.+.|-
T Consensus 522 v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~-t~~-~il~~f~tv~v-sl~~r~ 598 (975)
T COG5181 522 VSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT-TVG-LILPCFSTVLV-SLEFRG 598 (975)
T ss_pred HHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc-ccc-EEEecccceee-ehhhcc
Confidence 444555555666666666666666555543322223333334445555555554441 111 11222222222 222222
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH--HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+-.-.-++..++..|+++.+.+|..|+...+.++..-..|. +.+...|. .|.+.+ ....+++.-..+.+++.+..
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~s 675 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYS 675 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhh
Confidence 22222457788889999999999999999988863211111 12222222 345555 56788888888888887766
Q ss_pred CCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316 189 GKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 189 ~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
..... -..-..+++|.+..+|++...++....+..++.++...++.+..---..+.--|+..|.+-+.++|++|..+++
T Consensus 676 v~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 676 VHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred hhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 54222 22245789999999999999999999999999999877654322111233445677777888899999999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011316 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 347 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 347 (488)
.++..-. ...++..|+.-|+.. +...|.....+++-.+..+.. -.++|.|+.=...++..|+.-.
T Consensus 756 ~Is~aiG-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGv 820 (975)
T COG5181 756 CISRAIG-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGV 820 (975)
T ss_pred hHHhhcC-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhH
Confidence 8876322 223455566666555 444444444444444332111 1367888877777888999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh------------------------
Q 011316 348 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA------------------------ 403 (488)
Q Consensus 348 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~------------------------ 403 (488)
+.+++.+..........++.. ..+.|.+.+.+.|+--+..+...+..+.-.+..
T Consensus 821 Lkam~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPh 898 (975)
T COG5181 821 LKAMCFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPH 898 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcH
Confidence 999999987655444555443 567777788877776666666666555322110
Q ss_pred hhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316 404 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
.... ..++-..+...+...-.+..+.+-+-|++..|+.+.....+..+-.
T Consensus 899 vi~~-~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~ 948 (975)
T COG5181 899 VIQS-FDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVF 948 (975)
T ss_pred HHHH-HHHHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhc
Confidence 0000 0000001122222112355566667788888988887777776654
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.1e-07 Score=93.35 Aligned_cols=366 Identities=13% Similarity=0.118 Sum_probs=227.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
.+.+.|++++.-++-.|+.+|.++.+.+ .. .++.|.+.++|++.+ +.+|..|+.|...+....|+..+.+
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~E---ma-----rdlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f- 180 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSPE---MA-----RDLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF- 180 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCHH---Hh-----HHhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh-
Confidence 3445556777777777777777766532 22 245677778888877 8888888888888887677665544
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------------cccHhHHHHH
Q 011316 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSMLRNA 179 (488)
Q Consensus 114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~v~~~a 179 (488)
++...++|.+.+..+....+..+..+|..+++.-..+.+ .++.++..|++ -++|-++..+
T Consensus 181 ----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 181 ----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred ----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 566677777777777777777777777666544333333 44555555421 1356777777
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc
Q 011316 180 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 256 (488)
Q Consensus 180 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 256 (488)
++.|.-+.++++. ....+..++..+..-..+. -..+...+..++..+-....-+ . -++..|-++|.+.+.
T Consensus 255 LrlLriLGq~d~d-aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr-v-----lainiLgkFL~n~d~ 327 (866)
T KOG1062|consen 255 LRLLRILGQNDAD-ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR-V-----LAINILGKFLLNRDN 327 (866)
T ss_pred HHHHHHhcCCCcc-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH-H-----HHHHHHHHHhcCCcc
Confidence 8777777776522 2222222222222222111 1455666666666665443311 1 235667777777788
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 011316 257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 336 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll 336 (488)
.+|.-|+..|.......+...+. --..+++.|+++ +..+|+.|+..+..+... .++.. ++..|+.+|
T Consensus 328 NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL 394 (866)
T KOG1062|consen 328 NIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFL 394 (866)
T ss_pred ceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHH
Confidence 88888888888888766654432 235688999999 999999999988888764 22222 466788999
Q ss_pred hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh-hhhhccCCCCccch
Q 011316 337 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG-EAEKNMGNTGGVNL 415 (488)
Q Consensus 337 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~~~ 415 (488)
...+++++...+.-+..++..-.++.+-+ ++.+...++..-.-+...+...+..++..+ ...+.. .
T Consensus 395 ~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y-------~ 461 (866)
T KOG1062|consen 395 ESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY-------A 461 (866)
T ss_pred HhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH-------H
Confidence 98899999999999999987766655544 566667777665555555555555555443 211110 0
Q ss_pred HHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316 416 FAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 416 ~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
+.+..... ....++.-..+.+.+-|.|+|.+|=
T Consensus 462 ~~rLy~a~----~~~~~~~is~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 462 VLRLYLAL----SEDTLLDISQEPLLQVASWCIGEYG 494 (866)
T ss_pred HHHHHHHH----hhhhhhhhhhhhHHHHHHHHhhhhh
Confidence 11111100 0011233344556888999998876
No 58
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.08 E-value=2.9e-09 Score=99.15 Aligned_cols=226 Identities=18% Similarity=0.267 Sum_probs=159.4
Q ss_pred HHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHh------cCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 118 VPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS------NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 118 i~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
...++.+|+ +.++++...++..+..+..+.+...+.+.. .....++++++ ..+|..++..++..+..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 444555554 368999999999999999888876666554 22577888877 677999999999999999988
Q ss_pred CCCCChhhhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc------CC-CCcch
Q 011316 190 KPQPLFEQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL------RH-PSPSV 258 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL------~~-~~~~v 258 (488)
.+........+.++.++..+.+ ++.+++..++.++.++..... ....+.+.++++.+..++ .+ ....+
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 7555555445666777766654 456678999999999987654 557788889999999999 22 34678
Q ss_pred HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHh
Q 011316 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~ll~ 337 (488)
+..++.+++.++. ++.....+.+.++++.+.++++....+++-+-++.++.|+.....+ ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8999999999988 5566677778889999999998877889999999999999985443 6777888777776666555
Q ss_pred cC--ChhHHHH
Q 011316 338 NA--EFEIKKE 346 (488)
Q Consensus 338 ~~--~~~v~~~ 346 (488)
.+ |+++...
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 44 7776543
No 59
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.1e-08 Score=100.04 Aligned_cols=382 Identities=16% Similarity=0.191 Sum_probs=256.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
...|.+++++...|-+++...--.+.+.+...+ + ...+++..+++=..+++ +.+|..|++.++.+-. +...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P-~-----~a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~ 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKP-D-----LAILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCc-h-----HHHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence 456778888888887777777777777666542 1 12356777888888888 8999998888877654 2222
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
. -+...+.+.+++.++.+|..+.-+..++-..++ +.+...|.+..|-.++ .++++.|..+|+.+|..+...
T Consensus 120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence 2 236888999999999999999999999876554 4677788888888888 688999999999999999988
Q ss_pred CCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 190 KPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 190 ~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
.+. .........+..++..+..-+..-+...+.++.+-...++.... .++..+...|.+.++.+...+...+.+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 753 33444456666666666655666666666666666555442223 456777788888888888888888888
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-------------------------
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI------------------------- 323 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l------------------------- 323 (488)
+......... .+-..+-+.++.++.+. . .++..+..-+.-+....++....-
T Consensus 266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 7765444222 22235566667777666 4 555555554444443333311100
Q ss_pred HH-c---CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316 324 IE-A---GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 324 ~~-~---~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
.. . .++..+...-..-|.+...++.+|+++++...... .+++..|.++++.....++..+...++.++.
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 00 0 13333344444457888899999999998754221 4789999999998888888888888888887
Q ss_pred hhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 011316 400 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP 460 (488)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 460 (488)
+.+.. +....... -..+-+-++|+.+....|++.+|-+.=++.++
T Consensus 416 kyP~~-----------~~~vv~~l-----~~~~~sl~epeak~amiWilg~y~~~i~~a~e 460 (734)
T KOG1061|consen 416 KYPNK-----------YESVVAIL-----CENLDSLQEPEAKAALIWILGEYAERIENALE 460 (734)
T ss_pred cCCCc-----------hhhhhhhh-----cccccccCChHHHHHHHHHHhhhhhccCcHHH
Confidence 76643 22222111 11222335778888888888887776555444
No 60
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.02 E-value=1.4e-08 Score=94.70 Aligned_cols=227 Identities=14% Similarity=0.188 Sum_probs=162.3
Q ss_pred hHHHHHHhccc-ccHhHHHHHHHHHHHhhcCCCCCChhhh-------hchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316 160 LMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQT-------RPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 160 i~~l~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~-------~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
...++.++... ++.++..+++..+..+....+....... ......+++++.++|..+...++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 45566666555 7888999999999999888754433222 124667777888999999999999999999776
Q ss_pred chhHHHHHHhCCHHHHHHhcCC----CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh------cccchhhH
Q 011316 232 NDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSI 301 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~~v 301 (488)
+....... .+.++.+++.+.+ ++..++..++.++.++.. .+..+..+.+.++++.+.+++ .+.....+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 65544322 3556666666654 445677899999999987 667888888999999999999 45547889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011316 302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~ 380 (488)
+++++.++.-++.. ++....+.+.++++.|.++++.. .+++.+-++.++.|++..........++..|+++.+..+..
T Consensus 215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 99999999999876 77788888888999999999876 77899999999999998876557888888888887777665
Q ss_pred --CCCHHHHHH
Q 011316 381 --CPDPRIVTV 389 (488)
Q Consensus 381 --~~~~~v~~~ 389 (488)
.+|+++.+.
T Consensus 294 rk~~Dedl~ed 304 (312)
T PF03224_consen 294 RKWSDEDLTED 304 (312)
T ss_dssp S--SSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 367777654
No 61
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.02 E-value=9.9e-07 Score=85.84 Aligned_cols=407 Identities=14% Similarity=0.115 Sum_probs=243.8
Q ss_pred hhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC------
Q 011316 12 FSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD------ 85 (488)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~------ 85 (488)
..|..|...-..+-....+.+-.+++-..|+|++.+.-.+..+.+++..+ ......+....+|.++......
T Consensus 618 igyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~dr 695 (1172)
T KOG0213|consen 618 IGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDR 695 (1172)
T ss_pred HhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccc
Confidence 45555554333332233366777888888999999999999999987765 3334455667777777654321
Q ss_pred -CChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc--hhHHHHHhcCChHH
Q 011316 86 -DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP--KCRDLVLSNGALMP 162 (488)
Q Consensus 86 -~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~ 162 (488)
++..+...+. +....+.....+..++.-+.++++..|..++.++.++...-+ .+-... +...+..
T Consensus 696 r~ykqlv~ttv-----------~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidg 763 (1172)
T KOG0213|consen 696 RNYKQLVDTTV-----------EIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDG 763 (1172)
T ss_pred cchhhHHHHHH-----------HHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHH
Confidence 1111222222 122222223346666667778888888888887777753321 111111 1223444
Q ss_pred HHHHhc-ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh--HHHHH
Q 011316 163 LLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK--IQAVI 239 (488)
Q Consensus 163 l~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~ 239 (488)
++..+. ++....+.-....++++-... ........++..++..|++..+.++..++..++.++.--... .+.+.
T Consensus 764 il~Afqeqtt~d~vml~gfg~V~~~lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~ 840 (1172)
T KOG0213|consen 764 ILYAFQEQTTEDSVMLLGFGTVVNALGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMG 840 (1172)
T ss_pred HHHHHHhcccchhhhhhhHHHHHHHHhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 444442 233344544555555443322 223345667788889999999999999999999887321111 12222
Q ss_pred HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHH
Q 011316 240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 319 (488)
Q Consensus 240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 319 (488)
..| -.|.+.|....+++.-..+.++..++..-.-....---.+++|.|..+|++. ..+++..++..++.++...++.
T Consensus 841 ~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~ 917 (1172)
T KOG0213|consen 841 HLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEY 917 (1172)
T ss_pred Hhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCccc
Confidence 223 3467778888899888877777776642111100001237899999999999 9999999999999999754442
Q ss_pred HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHH-HHHHHHH-----------------------C---CCh
Q 011316 320 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVS-----------------------Q---GCI 372 (488)
Q Consensus 320 ~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~-----------------------~---~~~ 372 (488)
...--=..+--.|+++|...+.++|..|...++.++..-.+. ....|.+ . .++
T Consensus 918 v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVL 997 (1172)
T KOG0213|consen 918 VSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVL 997 (1172)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhh
Confidence 110000113334777888888899999999999988654332 2222221 1 235
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011316 373 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 451 (488)
Q Consensus 373 ~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 451 (488)
+.|++=...++..++.-++.++..++.+-...... |...+ ...|++-+-+.+.--++.|..++..+
T Consensus 998 PalmneYrtPe~nVQnGVLkalsf~Feyigemskd--------Yiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 998 PALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKD--------YIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred HHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhh--------HHHHh-----hHHHHHhhccccHHHHHHHHHHHHHH
Confidence 56666556777889999999999998875543321 22222 34455555555555566666655554
No 62
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.98 E-value=2.1e-07 Score=92.71 Aligned_cols=352 Identities=14% Similarity=0.130 Sum_probs=225.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
.|++.+.++|.+.|..|+.-|.+-+.+. .-..+.--+..++..++++|.+.+ .++|..|.+|++-+++.-++.+-.-
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le~- 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLET- 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHHH-
Confidence 6889999999999999999988877654 233333334567889999999999 9999999999999997555443322
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh----cc-cccHhHHHHHHHHHHHhhc
Q 011316 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF----NE-HAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l----~~-~~~~~v~~~a~~~L~~l~~ 188 (488)
.++.|..-+-++....|..+.-.|.....+-+..........+.+.+...+ .. .....++..++..+.-+..
T Consensus 86 ---~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 86 ---IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred ---HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 255565554444555555444433333222221222222333334444333 22 2334467777777766554
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHh
Q 011316 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVG 267 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~ 267 (488)
....--...-.+.+..++.-+.++...++..++.+|+.++...+.. .. .+++..+.+-|.. ..+...+.-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 4322222244566677777778888999999999999999654421 11 2556667766655 34555666778888
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHh---cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----
Q 011316 268 NIVTGDDMQTQCIINHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA----- 339 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~----- 339 (488)
.+++........- -..+++.+.+.. ... +.++|+.+..++..+....+..+-..+. .++..+++.+..+
T Consensus 239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 8887544322211 125677777777 555 7889999999999988866655443332 2444444444310
Q ss_pred -----------------------------ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 011316 340 -----------------------------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 390 (488)
Q Consensus 340 -----------------------------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a 390 (488)
++.||+.|+.++..+... ..+....+.+ .+-+.++.-+++.++.|+.-.
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQ-TLGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence 257999999999999874 3455555544 567788888888888888888
Q ss_pred HHHHHHHHHh
Q 011316 391 LEGLENILKA 400 (488)
Q Consensus 391 l~~L~~l~~~ 400 (488)
..++..++..
T Consensus 394 f~~yi~ll~q 403 (1233)
T KOG1824|consen 394 FHAYIALLKQ 403 (1233)
T ss_pred HHHHHHHHHc
Confidence 8777777653
No 63
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.95 E-value=1.5e-07 Score=88.76 Aligned_cols=353 Identities=13% Similarity=0.044 Sum_probs=213.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHH
Q 011316 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVV 112 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~ 112 (488)
..++.|++..|..-..|+..+..++.-+ -+.. ...|.+..++...-.+.....+..++.++++++... |+.....
T Consensus 98 ~al~aL~s~epr~~~~Aaql~aaIA~~E-lp~~---~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~ 173 (858)
T COG5215 98 MALRALKSPEPRFCTMAAQLLAAIARME-LPNS---LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQM 173 (858)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHhh-Cccc---cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHH
Confidence 4677788888888888888888887655 1111 123445555555555554678899999999999832 3222222
Q ss_pred HhCCCHHHHHH-hhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh-HHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 113 IDHGAVPIFVR-LLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL-MPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 113 ~~~g~i~~L~~-lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i-~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+.++-.++. .++. ++..+|-.++.+|.+-+....+.-..-.+.+.+ +.....- +.++.+++..+..+|..+..-
T Consensus 174 -sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 174 -SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred -hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHHHHHHH
Confidence 2233334433 4444 678899999999988332111110111111222 2222222 778999999999999988654
Q ss_pred C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHH-------------HHH---HhCCHHHHHHhcC
Q 011316 190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ-------------AVI---EAGVCPRLVELLR 252 (488)
Q Consensus 190 ~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~-------------~~~---~~~~l~~L~~lL~ 252 (488)
. ...+.....-........+++++.++...+...-..++...-+..- -+. -.+++|.|+++|.
T Consensus 252 yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~ 331 (858)
T COG5215 252 YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLE 331 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHH
Confidence 3 1112222233444555677899999999998888777753211100 011 1257889999986
Q ss_pred C-------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011316 253 H-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325 (488)
Q Consensus 253 ~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 325 (488)
. .++.+...|..||.-++.... ..+++ .++..+-.-++++ ++.-|..|+.+++.+..+..+....-+-
T Consensus 332 ~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V 406 (858)
T COG5215 332 KQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIV 406 (858)
T ss_pred hcCCCccccccchhhhHHHHHHHHHHHhh---hHhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhH
Confidence 5 235677777777766654222 22222 2555555667778 8999999999999999864443333333
Q ss_pred cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhh
Q 011316 326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 326 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~ 401 (488)
...+|.+...+.++...++..++|+++.++..- ...+...+-+...+...- .+.+.+..++.|...+++..-
T Consensus 407 ~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~ 481 (858)
T COG5215 407 PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI 481 (858)
T ss_pred HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence 468999999888888889999999999998532 111111222222222111 234556666777777776543
No 64
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.94 E-value=3.9e-07 Score=86.05 Aligned_cols=361 Identities=12% Similarity=0.069 Sum_probs=222.1
Q ss_pred hccHHHHHHHhc----CC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316 29 LESLPAMVAGVW----SD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 29 ~~~i~~l~~~L~----s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
.+..|.+++.|. .+ ....+..++.++..++....++.....-+.-.+......++.+.+..+|..|+.+|.+-+.
T Consensus 128 ~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~ 207 (858)
T COG5215 128 NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM 207 (858)
T ss_pred cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 355666666553 33 3577888899999887765332222222222233333445555557899999999887332
Q ss_pred C------CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHH
Q 011316 104 G------TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 177 (488)
Q Consensus 104 ~------~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~ 177 (488)
. .++.|+. ++...+..-+.++.+++..+..+|..+..-...+.+..++.-......+.+ ++++.++..
T Consensus 208 fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~ 281 (858)
T COG5215 208 FVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAI 281 (858)
T ss_pred HHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHH
Confidence 1 1222222 345556667779999999999999998754433334444432233333444 788889998
Q ss_pred HHHHHHHHhhcCCCCCC-----------------hhhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCCch
Q 011316 178 NATWTLSNFCRGKPQPL-----------------FEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTND 233 (488)
Q Consensus 178 ~a~~~L~~l~~~~~~~~-----------------~~~~~~~~~~L~~ll~~-------~~~~v~~~al~~L~~l~~~~~~ 233 (488)
.+...-+.+|....... ......++|.++.+|.. +++.+-..|..||.-.+....+
T Consensus 282 qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd 361 (858)
T COG5215 282 QAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD 361 (858)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh
Confidence 89888878776431100 01135688999999975 2456677777777766654432
Q ss_pred hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316 234 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 234 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
.+++ .++..+-+-++++++.-|+.+..+++.+..+.......-+-...++.+...+.++ .-.++..++|+++.++
T Consensus 362 ---~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~ia 436 (858)
T COG5215 362 ---KIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIA 436 (858)
T ss_pred ---HhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHH
Confidence 2333 2555556667888999999999999999987766555445557888888888877 8889999999999998
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhccCCCHHHH--HHHHHCCChHHHHhhcC-----CCC
Q 011316 314 AGNVNQIQAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGSNEQI--KFLVSQGCIKPLCDLLN-----CPD 383 (488)
Q Consensus 314 ~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~~--~~l~~~~~~~~L~~ll~-----~~~ 383 (488)
.+-+..+. ..|-++..++.... +.+.+..++.|...|++.+-.+... ..+...-....+-.+++ ..+
T Consensus 437 d~va~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne 513 (858)
T COG5215 437 DHVAMIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNE 513 (858)
T ss_pred HHHHHhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccc
Confidence 65333222 12333333332222 2677888999999999875422110 11111111111111222 344
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 011316 384 PRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 384 ~~v~~~al~~L~~l~~~~~~ 403 (488)
...|..+..+|..++.+.+.
T Consensus 514 ~n~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 514 SNLRVSLFSALGTLILICPD 533 (858)
T ss_pred hhHHHHHHHHHHHHHhhcch
Confidence 56777888888888776553
No 65
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2e-07 Score=91.43 Aligned_cols=301 Identities=19% Similarity=0.175 Sum_probs=185.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.++.+++...++++.+|..|++.+..+--. .+. .-....+.+.+++.+ +.+|..++.+..++-..+ .
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-------~i~-ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~ 153 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD-------KIT-EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---P 153 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEeeh-------HHH-HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---h
Confidence 6678888888899999998888776664221 111 235678889999999 999999999998887643 4
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
+.....|+++.|..++.+.++.+..+|+.+|..+...++......+....+..++..+... ++ -.-+..|-.++..
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec-~E---W~qi~IL~~l~~y 229 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC-TE---WGQIFILDCLAEY 229 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh-hh---hhHHHHHHHHHhc
Confidence 4566789999999999999999999999999999876653111111112233344444111 11 1223334444444
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
.+... .....++..+...+.+.+..+...+...+..+...-..... ..-..+-+.++.++..+. +++..++.-+.-+
T Consensus 230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li 306 (734)
T KOG1061|consen 230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLI 306 (734)
T ss_pred CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence 44333 44456777888888888888888888888887765444222 222356677777777665 6666666666655
Q ss_pred hcCCchhhHHHh--------------------------hCCChHHHHHHh---cccchhhHHHHHHHHHHHHhcCCHHHH
Q 011316 270 VTGDDMQTQCII--------------------------NHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQI 320 (488)
Q Consensus 270 ~~~~~~~~~~~~--------------------------~~~~~~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~ 320 (488)
....+.....-+ +.++-+.+-++. ..- +.+..+.+++++++++..-.+.
T Consensus 307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~- 384 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS- 384 (734)
T ss_pred HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence 544332111100 111111111111 222 5667788999999998742221
Q ss_pred HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
+++++.|++++.-+...+..++...+..+..
T Consensus 385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 385 -----NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred -----hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 3466666666665433444444555554443
No 66
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.9e-05 Score=77.72 Aligned_cols=350 Identities=12% Similarity=0.107 Sum_probs=232.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.|.-++..+...|..+|..++..+..+++..+.+..+.+. ..-+|..++.+|.+.. +.+|..++..|..+..+++..
T Consensus 122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL~k~n~~I 200 (970)
T KOG0946|consen 122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR-EPIRNEAILLLSELVKDNSSI 200 (970)
T ss_pred hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh-hhhchhHHHHHHHHHccCchH
Confidence 67888888999999999999999999999987666666655 4678999999999999 899999999999999988888
Q ss_pred hHHHHhCCCHHHHHHhhCC----CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc--cc--------Hh
Q 011316 109 TRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--AK--------LS 174 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~--------~~ 174 (488)
.+.++-.+++..|..+++. +..-+.+-|+..|.||..++...+..+.+.+.++.+.++|.-. .| ..
T Consensus 201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qr 280 (970)
T KOG0946|consen 201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQR 280 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHH
Confidence 8888888899999999986 2346889999999999999888899999999999999887311 11 11
Q ss_pred H--HHHHHHHHHHhhcCCCCC-------ChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhC-
Q 011316 175 M--LRNATWTLSNFCRGKPQP-------LFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAG- 242 (488)
Q Consensus 175 v--~~~a~~~L~~l~~~~~~~-------~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~- 242 (488)
+ ...++.++..+....... ..+...+++..|..++-++ ..+++..++.++.++.+++......+.+..
T Consensus 281 v~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~ 360 (970)
T KOG0946|consen 281 VQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTA 360 (970)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccC
Confidence 1 223444444444433111 1233367788888888776 467888899999998887765544444321
Q ss_pred ---------CHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhC-----------CC--hHHHHHHhcccchh
Q 011316 243 ---------VCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINH-----------QA--LPCLLDLLTQNYKK 299 (488)
Q Consensus 243 ---------~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~--~~~L~~lL~~~~~~ 299 (488)
++-.++.+..+ ..+..|.++++++..+...+......++.. .+ -..++..+.+. ++
T Consensus 361 p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~tllp~~~nst~Nsl~ag~l~~~~l~s~-d~ 439 (970)
T KOG0946|consen 361 PSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLKTLLPSSTNSTSNSLSAGQLLLVGLSST-DS 439 (970)
T ss_pred CCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHHHHhhhhccccccchhhhhHHHHhhccc-hH
Confidence 12223333333 346788899999998888777655544310 01 11122222222 32
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHH--------cCChHHH---HHHHh---cCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316 300 SIKKEACWTISNITAGNVNQIQAIIE--------AGIIGPL---VNLLL---NAEFEIKKEAAWAISNATSGGSNEQIKF 365 (488)
Q Consensus 300 ~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~l~~L---~~ll~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 365 (488)
---..++.++..+...+......+.. ..-...| +..+. ...+..+..-+..|+.+..++......+
T Consensus 440 ~~nwFt~v~lmh~l~dn~~~kEeLlrV~l~~~~gn~p~tlL~~~ct~~~~~~t~r~qt~vglLmlL~~WL~~cp~AV~dF 519 (970)
T KOG0946|consen 440 LDNWFTAVILMHLLQDNDQLKEELLRVPLAVDTGNDPDTLLFQQCTNLKLQGTSRHQTRVGLLMLLITWLYGCPDAVKDF 519 (970)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 22234444455554443433333332 1111122 11111 1233344446777778888777667777
Q ss_pred HHHCCChHHHHhhcCC
Q 011316 366 LVSQGCIKPLCDLLNC 381 (488)
Q Consensus 366 l~~~~~~~~L~~ll~~ 381 (488)
|.+++.++.|...+-+
T Consensus 520 Ls~~s~iq~Ltt~l~~ 535 (970)
T KOG0946|consen 520 LSESSIIQYLTTQLMD 535 (970)
T ss_pred HccccHHHHHHHHHhh
Confidence 7888889888876653
No 67
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=2.5e-06 Score=82.10 Aligned_cols=362 Identities=16% Similarity=0.121 Sum_probs=236.2
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (488)
.++..++.-+..++ +.+|.....|+..+........ ...+.+.+.+++......-+..+.+.++.+..+.. ..
T Consensus 96 ~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~ 168 (569)
T KOG1242|consen 96 SIIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IE 168 (569)
T ss_pred HHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hh
Confidence 35677888888888 8999998888877665221111 11246777888888888889999999999987653 35
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011316 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 232 (488)
.+.+.+.+..+...+.+..+..-++.+..+.-..+..-........-..+|.++.-+.+....++..+..+...+...-+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 56677788888888844333333433444444444333333334445666777777777788898888887777654432
Q ss_pred hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011316 233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312 (488)
Q Consensus 233 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl 312 (488)
... ++ .+++.++.-+....+..+..++..++.++...+.+....+ ..+++.+.+.|.+. .+++|+.+..++..+
T Consensus 249 ~~a---VK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 249 AYA---VK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKF 322 (569)
T ss_pred cch---hh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence 221 11 2344444444444788899999999999987776655444 47999999999999 999999999999999
Q ss_pred hc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 011316 313 TA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 390 (488)
Q Consensus 313 ~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~a 390 (488)
++ .+++ ++ .++|.|++.+.++.-.+ .++...|+.-......+- ..+. -.++.|.+-+...+..+...+
T Consensus 323 ~svidN~d-I~-----~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~-psLa--lmvpiL~R~l~eRst~~kr~t 392 (569)
T KOG1242|consen 323 GSVIDNPD-IQ-----KIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDA-PSLA--LMVPILKRGLAERSTSIKRKT 392 (569)
T ss_pred HHhhccHH-HH-----HHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecc-hhHH--HHHHHHHHHHhhccchhhhhH
Confidence 87 4454 22 26888999998875333 344555544432221100 1110 136666777777788888899
Q ss_pred HHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC---CCCCCCCCCCC
Q 011316 391 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED---EDEPLPPGDAT 467 (488)
Q Consensus 391 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~---~~~~~~~~~~~ 467 (488)
..++.|++..-+.... ....+.+. ++.+.....+..|+++..+.+.+..+.+.-. .++--|..+++
T Consensus 393 ~~IidNm~~LveDp~~---------lapfl~~L--lp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~ 461 (569)
T KOG1242|consen 393 AIIIDNMCKLVEDPKD---------LAPFLPSL--LPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSET 461 (569)
T ss_pred HHHHHHHHHhhcCHHH---------HhhhHHHH--hhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHh
Confidence 9999999876532221 23333322 6778888888899999999998855554321 13335555544
Q ss_pred C
Q 011316 468 Q 468 (488)
Q Consensus 468 ~ 468 (488)
.
T Consensus 462 ~ 462 (569)
T KOG1242|consen 462 L 462 (569)
T ss_pred h
Confidence 3
No 68
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.89 E-value=3.5e-07 Score=87.12 Aligned_cols=302 Identities=13% Similarity=0.122 Sum_probs=191.9
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh--hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN--TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (488)
++...+++|++.. +.+|++|+...+.++.--..+ .+.+...| ..|-..+....+++.-..+.+++.+.....--.
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 4667778899999 999999999888877511111 12222333 335556667888888887777777753221000
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh-hchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011316 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSDG 230 (488)
Q Consensus 152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 230 (488)
..---.|+++.+...| ++....+..+....+..+|...+...-... ..+.--|+..|++.+.+++..|..+++.++..
T Consensus 682 mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 682 MQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred cCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 0011246788888898 778889999999999999998755332222 33444577888889999999999999998865
Q ss_pred CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310 (488)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~ 310 (488)
-..+ +++..|++-|+..+...|....-+++-.+..+. ...++|.++.=-.++ +..++...+.+++
T Consensus 761 iGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam~ 825 (975)
T COG5181 761 IGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAMC 825 (975)
T ss_pred cCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHHH
Confidence 4332 556667776766554444433333333332211 124566666666777 8888888888888
Q ss_pred HHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH-HHHHHHCCChHHHHhhcCCCCHHHHH
Q 011316 311 NITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-IKFLVSQGCIKPLCDLLNCPDPRIVT 388 (488)
Q Consensus 311 nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~~~~~~~~L~~ll~~~~~~v~~ 388 (488)
.+... .....+++.. +.|.|-..+.+.|+.-|+.|...+.+++.++.--. ...++. ++..|.--+-++.|.++.
T Consensus 826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~ 901 (975)
T COG5181 826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQ 901 (975)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHH
Confidence 77652 1233333433 68888889999999999999999999998763211 011110 122222222356677776
Q ss_pred HHHHHHHHHH
Q 011316 389 VCLEGLENIL 398 (488)
Q Consensus 389 ~al~~L~~l~ 398 (488)
...+.+..+.
T Consensus 902 ~~~Eg~e~~~ 911 (975)
T COG5181 902 SFDEGMESFA 911 (975)
T ss_pred HHHHHHHHHH
Confidence 6666555553
No 69
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.87 E-value=1.3e-07 Score=87.06 Aligned_cols=273 Identities=17% Similarity=0.192 Sum_probs=193.0
Q ss_pred HHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhh
Q 011316 66 INEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNV 143 (488)
Q Consensus 66 ~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l 143 (488)
.+.+...|++..|+++++.++. ..+|.+|.+.|-.+.. .++++.++..| +..++.+-+. +.++..+..+.+|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 4666778999999999999873 3469999999988875 68888888877 5555555543 6789999999999999
Q ss_pred hCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhccCChhHHHHHH
Q 011316 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIHSNDDEVLTDAC 221 (488)
Q Consensus 144 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al 221 (488)
..++.+....++..|++..++--. +..++.+.++++.+|.|++-.. .....+....+-+.|..+-.+.|.-.+.++|
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 999998888999999999888877 6678999999999999988765 4445556667777888887778888999999
Q ss_pred HHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhH
Q 011316 222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI 301 (488)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v 301 (488)
.+.+.++.+.+ ....+.+.|.+..+-.++.+-+|..-.. --...+.+ -....++.|+.+|++. ..+.
T Consensus 329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG--------~~~d~LqRLvPlLdS~-R~EA 395 (832)
T KOG3678|consen 329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQG--------RGPDDLQRLVPLLDSN-RLEA 395 (832)
T ss_pred HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhcc--------CChHHHHHhhhhhhcc-hhhh
Confidence 99999987754 3344666676666555555545432111 00011111 1124578899999877 5555
Q ss_pred HHHHHHHHHHHhc-CCH-HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316 302 KKEACWTISNITA-GNV-NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 302 ~~~a~~~L~nl~~-~~~-~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
+..+++-++-=+. .+. ...+.+.+.|.+..|-++..+++..-..-|-.+|.-+-
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 5555544443222 111 22234456788999999888776554455666665554
No 70
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.6e-07 Score=88.44 Aligned_cols=321 Identities=17% Similarity=0.112 Sum_probs=206.8
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316 70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 149 (488)
...+.++..+..+.+++ ..+|..|+..+.|++.. ........-..+...+.++..+.+..++. ++..+-.+..+-..
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 34578899999999999 79999999999999872 22222222334566666766666666654 44445444322110
Q ss_pred hHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011316 150 CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 226 (488)
Q Consensus 150 ~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~ 226 (488)
-+.. .--++.++.++. ...++..|...+.-+..+-..++..-......+++.|..++.+++++++..+=.++.+
T Consensus 158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 0010 012444444442 4457788887777777665554444444567889999999999999998776666665
Q ss_pred hcc---CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH
Q 011316 227 LSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303 (488)
Q Consensus 227 l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~ 303 (488)
+.. +++.. +-....++.++..+.++++.++..|+.-+..+..-.+... ...-.|++..+++.+.+.+...++.
T Consensus 235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~ 310 (675)
T KOG0212|consen 235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKE 310 (675)
T ss_pred HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHH
Confidence 542 22211 1122678889999999999999999888877776544332 2234577888888887772334555
Q ss_pred HHHHHHHHHhc--CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011316 304 EACWTISNITA--GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 304 ~a~~~L~nl~~--~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~ 380 (488)
.+...-..+.. +.+...+. ++ ..+++.+.+.+.++..+.|..++.-+..+-.....+.... .......|..-|.
T Consensus 311 ~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h--~~~if~tLL~tLs 387 (675)
T KOG0212|consen 311 YAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVH--NDSIFLTLLKTLS 387 (675)
T ss_pred HHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhh--ccHHHHHHHHhhc
Confidence 44433322222 11111111 22 2368888899999999999999988888876554333222 3357888888889
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhh
Q 011316 381 CPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 381 ~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
+++.+++..++..+.+++.....
T Consensus 388 d~sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 388 DRSDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred CchhHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999876554
No 71
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=3.4e-07 Score=92.12 Aligned_cols=277 Identities=17% Similarity=0.217 Sum_probs=206.8
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH
Q 011316 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 121 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 121 (488)
+....|+.|...-....+....+.- -+|..++.|-+. --|..|+..|+....-.+.....-..-|++|.+
T Consensus 448 ~FFteQLTAFevWLd~gse~r~PPe-------QLPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYV 517 (1387)
T KOG1517|consen 448 PFFTEQLTAFEVWLDYGSESRTPPE-------QLPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYV 517 (1387)
T ss_pred chHHHHHHHHHHHHHhccccCCChH-------hcchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHH
Confidence 3446677777777776555433332 255566665553 346778999999988788888888889999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHHHHHHHHHHhhcCCCCCChh-hh
Q 011316 122 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFE-QT 198 (488)
Q Consensus 122 ~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~-~~ 198 (488)
+++|+++..++|-..+.+.+.|...++.|+..+++.++-...++.+..+. +++-+..++..|..++.+....+.. ..
T Consensus 518 LKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~ 597 (1387)
T KOG1517|consen 518 LKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN 597 (1387)
T ss_pred HHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc
Confidence 99999999999999999989988777889888888877777777774422 4567888999999999987444443 44
Q ss_pred hchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC----C
Q 011316 199 RPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----D 273 (488)
Q Consensus 199 ~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~ 273 (488)
.+++..+...+.++ .+-++..++-+|+.|-++.+...=.-.+.+....|..+|.++-++||.+|+.+|+.+... .
T Consensus 598 ~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~f 677 (1387)
T KOG1517|consen 598 GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNF 677 (1387)
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccccccc
Confidence 67888888999885 688899999999999988765544455668889999999999999999999999999885 2
Q ss_pred chhhHHH------------hhCCCh---HHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 011316 274 DMQTQCI------------INHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 329 (488)
Q Consensus 274 ~~~~~~~------------~~~~~~---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 329 (488)
++....+ ++..+. ..++..++.. .+-+|.+..-++..++.+.........-+...
T Consensus 678 de~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~ 747 (1387)
T KOG1517|consen 678 DEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLL 747 (1387)
T ss_pred chhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhcc
Confidence 3322222 122222 3566677777 89999999999999988756555444433333
No 72
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.81 E-value=2.2e-06 Score=81.03 Aligned_cols=353 Identities=10% Similarity=0.075 Sum_probs=221.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.+++++.++...|..+|..|+..+.+++.....+... .-+.+...+.++..+++ ..++. ++..+-.+..+-...+
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~--~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV--YFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTES 159 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc--chHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhcccc
Confidence 67899999999999999999999999987654322222 12345667777777776 55554 4555555444221111
Q ss_pred H-HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH-HhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 110 R-VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV-LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 110 ~-~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
. .+-=.+++|.|-.-+...++..|...+.-|..+-..++ . +.+ .-...++.|+..| .+++.+++..+-.+++.+.
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~-~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-L-EMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-H-HHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence 1 22222345555555555788888888877777744332 2 222 1123566777778 7778888887777777766
Q ss_pred cCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc-chHhHHHHH
Q 011316 188 RGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-SVLIPALRT 265 (488)
Q Consensus 188 ~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~ 265 (488)
..- .....+.....++.++..+.++++.++..|+.-+.....-.+...- ..-.|++..++.++.+..+ .++..+...
T Consensus 237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~e~~~i~~~a~~~ 315 (675)
T KOG0212|consen 237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDTEEMSIKEYAQMV 315 (675)
T ss_pred HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence 544 2222234567788899999999999999988888777765543322 3334778888888877655 344444332
Q ss_pred ---HhHhhcCCchhhHHHhh-CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 011316 266 ---VGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF 341 (488)
Q Consensus 266 ---L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 341 (488)
+..++.. +...+. ++ ..+++.+.+.+.+. ..+.|..+..-+..+-...+... ......+++.|+.-+.+.+.
T Consensus 316 n~~l~~l~s~-~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd 391 (675)
T KOG0212|consen 316 NGLLLKLVSS-ERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSD 391 (675)
T ss_pred HHHHHHHHhh-hhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchh
Confidence 2233321 111111 22 24677888888888 88999988877777765434332 22345689999999999999
Q ss_pred hHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316 342 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 342 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
+|...++..+++++.......... .+..|.+++..+..-+...+--+++.++-
T Consensus 392 ~vvl~~L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHHHHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 999999999999997653322211 23445555555444444444445555543
No 73
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.80 E-value=2.8e-07 Score=85.03 Aligned_cols=267 Identities=14% Similarity=0.099 Sum_probs=183.1
Q ss_pred ccHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011316 30 ESLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
+++..|++.+++++. .++.+|++.|.+++..+ +.+.+.+.| +..++.+-+....++.+...+.+|.++...+.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae---N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE---NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh---hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 788999999998774 56999999999998754 456666665 566666666555478899999999999998999
Q ss_pred hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316 108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l 186 (488)
....++..|++..++...+..++.+.++|+.+|+|++-+. ...+..+++..+-+.|+.+. .+.|.-.+.+||.+.+.+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999998543 44567777777777777776 666888899999999999
Q ss_pred hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011316 187 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L 266 (488)
+.+.+.......++.+..+-.++.+-|+.-- +....+..+ -...+-++.|+.+|++..-+.+..+..-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 9887655555556655555555555444321 111111111 11114567888888865544443333322
Q ss_pred hHhhc-CCc-hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316 267 GNIVT-GDD-MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 267 ~~l~~-~~~-~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
+.=+. .+. ...+.+-+-|.++.|-.+.+++ +.--.+.|..+|.-+.
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviG 451 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhc
Confidence 22111 111 1223344668888888888877 5544444444444443
No 74
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=5.5e-06 Score=81.41 Aligned_cols=366 Identities=13% Similarity=0.150 Sum_probs=229.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316 33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 112 (488)
Q Consensus 33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 112 (488)
..|..+|.|.....++.|.+-+..+.... .+ . ...+|..++...+.+ .+++.-.---|...++..++..-
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G-~d-v-----S~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLAL-- 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG-KD-V-----SLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLAL-- 107 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcC-Cc-H-----HHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCcee--
Confidence 46888899988888888888777776654 22 2 346888999999998 89998887778888875554321
Q ss_pred HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCC
Q 011316 113 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ 192 (488)
Q Consensus 113 ~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~ 192 (488)
=-|..+-+-|.++++.+|..|+++|+.+-. +... +++-.-++....+.++-||..|+.++-.+-.-.+.
T Consensus 108 ---LSIntfQk~L~DpN~LiRasALRvlSsIRv--p~Ia------PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 108 ---LSINTFQKALKDPNQLIRASALRVLSSIRV--PMIA------PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred ---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHH------HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 137889999999999999999999998731 1111 11111223333677889999999999998766533
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC
Q 011316 193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272 (488)
Q Consensus 193 ~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 272 (488)
.. ..++..+-.+|.+.++.|.-.|+.+...+|...-+.+. +-...+..++.+-++.-+...+..|...|+.
T Consensus 177 ~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 177 QK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred hH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 32 25666677788888999999999999988865332222 4456677777765555565666666655542
Q ss_pred C---chhhHH----------------------HhhCC---ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011316 273 D---DMQTQC----------------------IINHQ---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 273 ~---~~~~~~----------------------~~~~~---~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
. +..... ..+.. +++..-.+|.+. ++.+...++.+...++-.+..
T Consensus 248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~~~------ 320 (968)
T KOG1060|consen 248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKNQV------ 320 (968)
T ss_pred cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHHHH------
Confidence 1 100000 00000 123334456666 778888888888877653211
Q ss_pred HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC----------------CHHHHHH--------HHHCC----ChHHHH
Q 011316 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG----------------SNEQIKF--------LVSQG----CIKPLC 376 (488)
Q Consensus 325 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----------------~~~~~~~--------l~~~~----~~~~L~ 376 (488)
..++..|+++|.++ ..+|...+..+..++... ++.+.+. |.... +++-|.
T Consensus 321 -~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q 398 (968)
T KOG1060|consen 321 -TKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQ 398 (968)
T ss_pred -HHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 23566777777664 445555555555554322 1111111 11111 233444
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316 377 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 377 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
.++++.+..+...+..+|+.......... .-.+.-|..++.+.+..|...|...|+++...
T Consensus 399 ~YI~s~d~~faa~aV~AiGrCA~~~~sv~-----------------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 399 TYIKSSDRSFAAAAVKAIGRCASRIGSVT-----------------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHhhCchh-----------------hHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 45566666777777788877765433221 22356677777777777877777777776653
No 75
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=3.7e-06 Score=85.16 Aligned_cols=385 Identities=14% Similarity=0.136 Sum_probs=243.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+..+..-+.-+.+++.++..++.-+.++++.. .......++++.+.++..+.. ..+|+.|...+.++.......-
T Consensus 237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch
Confidence 44444455556678999999999999887654 235667889999999999988 7999999998888876221111
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC--------------------Cchh-------------------
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD--------------------SPKC------------------- 150 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~--------------------~~~~------------------- 150 (488)
. ....+.+.++....+++..++.........+... .+.-
T Consensus 312 -d-~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 312 -D-VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred -h-hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 1 1223467777777777777766655544444311 0000
Q ss_pred -HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316 151 -RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 151 -~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
...+.....++.+-.+. .+.+..++...+.....+..-.+ .........|.....+++..+.++....+.+..+-.
T Consensus 390 ~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~ 466 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE 466 (759)
T ss_pred cccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh
Confidence 00001111112121222 33344444433333333222111 222335667777888888889999888877765554
Q ss_pred CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316 230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
..+..-........++.+..+-....+.++.+.++.+..++.... ..+++...-+.+...+.+. ...++..|+..+
T Consensus 467 v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l 542 (759)
T KOG0211|consen 467 VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNL 542 (759)
T ss_pred ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHh
Confidence 433322334445677778777777778899999999888886433 3344445556666667666 678999999999
Q ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 011316 310 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 389 (488)
Q Consensus 310 ~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~ 389 (488)
..++....... .....++.++....+++...|...+.++..++...+.+. ....+++.+.++..++.+.||..
T Consensus 543 ~~l~~~~G~~w---~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~n 615 (759)
T KOG0211|consen 543 PALVETFGSEW---ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRIN 615 (759)
T ss_pred HHHHHHhCcch---hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhh
Confidence 98887322111 112367777777777778888888888887776544333 33357999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316 390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450 (488)
Q Consensus 390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 450 (488)
++..|..+...-... ..+....+.++.+..+++.+++..|......
T Consensus 616 vak~L~~i~~~L~~~---------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 616 VAKHLPKILKLLDES---------------VRDEEVLPLLETLSSDQELDVRYRAILAFGS 661 (759)
T ss_pred HHHHHHHHHhhcchH---------------HHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 999999887764432 1223335666777777777777776665543
No 76
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=5.6e-06 Score=72.70 Aligned_cols=270 Identities=14% Similarity=0.146 Sum_probs=179.4
Q ss_pred HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH
Q 011316 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 240 (488)
Q Consensus 161 ~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 240 (488)
..++.++ .+.++.++..|..-+..++..............++.+.+++...++ .+.+..++.|++....- .+.++.
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l-~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL-RKKLLQ 81 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH-HHHHHH
Confidence 4567777 7889999999999998888772222222335677888889887766 77889999999987643 355665
Q ss_pred hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh------hCCChHHHHHHhcccchhhH-HHHHHHHHHHHh
Q 011316 241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII------NHQALPCLLDLLTQNYKKSI-KKEACWTISNIT 313 (488)
Q Consensus 241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~~~~~L~~lL~~~~~~~v-~~~a~~~L~nl~ 313 (488)
. ++..++..+.++........+..++|++........... +.+.+.......+++.+... -...+.+++|++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 5 888889999888888999999999999986554433222 24556666666665533222 235566778887
Q ss_pred cCCHHHHHHHHHcCChH--HHHHHHhcCChhHH-HHHHHHHHHhccCCCHHHHHHHHH----------------------
Q 011316 314 AGNVNQIQAIIEAGIIG--PLVNLLLNAEFEIK-KEAAWAISNATSGGSNEQIKFLVS---------------------- 368 (488)
Q Consensus 314 ~~~~~~~~~l~~~~~l~--~L~~ll~~~~~~v~-~~a~~aL~~l~~~~~~~~~~~l~~---------------------- 368 (488)
.. ...+..+.+...++ .+..+ .+.+..+| ...+..|.|.+... ..-..+..
T Consensus 161 ~~-~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 161 QF-EAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred hh-hhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence 64 45556665544322 23332 23455555 44677777866533 11122211
Q ss_pred --CCChHHHHhhcC-----CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh-hcCCCHHH
Q 011316 369 --QGCIKPLCDLLN-----CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QSHDNTEI 440 (488)
Q Consensus 369 --~~~~~~L~~ll~-----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l-~~~~~~~v 440 (488)
.+...-| +++. .+++.++...+++|..++.... .++.++..|+...+..+ ...+++++
T Consensus 237 dm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~-------------GRe~lR~kgvYpilRElhk~e~ded~ 302 (353)
T KOG2973|consen 237 DMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRA-------------GREVLRSKGVYPILRELHKWEEDEDI 302 (353)
T ss_pred HHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhH-------------hHHHHHhcCchHHHHHHhcCCCcHHH
Confidence 1122222 4443 4578899999999988875544 38889999999999999 45578999
Q ss_pred HHHHHHHHHHhcC
Q 011316 441 YEKAVKILETYWV 453 (488)
Q Consensus 441 ~~~a~~~l~~~~~ 453 (488)
..+..++.+-+..
T Consensus 303 ~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 303 REACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHHHh
Confidence 9888888877766
No 77
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.2e-05 Score=69.64 Aligned_cols=344 Identities=14% Similarity=0.147 Sum_probs=229.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc---HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP---INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 106 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~ 106 (488)
+.+|.|-..|..++..++..++..+..++.+.+... +..+++.++++.++..+-.++ .++...|...+..++. .+
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fp 159 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FP 159 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cH
Confidence 345566666778999999999999999887653222 344568899999999999888 8999999999999998 78
Q ss_pred hhhHHHHhCCCHHHHH--HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011316 107 ENTRVVIDHGAVPIFV--RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184 (488)
Q Consensus 107 ~~~~~~~~~g~i~~L~--~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~ 184 (488)
.....+++......+- .+-...+.-.|...+..+..+.+-++.....+...|.+..+..-+....|.-++.+++....
T Consensus 160 aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt 239 (524)
T KOG4413|consen 160 AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT 239 (524)
T ss_pred HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence 8888888777665543 23334566777788888999988888888888888999888888855577778889999989
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCc--h-hHHHHHHh--CCHHHHHHhcCCCCcc
Q 011316 185 NFCRGKPQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTN--D-KIQAVIEA--GVCPRLVELLRHPSPS 257 (488)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~--~-~~~~~~~~--~~l~~L~~lL~~~~~~ 257 (488)
.++.......+....++++.+..++.- .++--.-.++...+.+..... + .-+.+++. -.++..+......+++
T Consensus 240 eLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpd 319 (524)
T KOG4413|consen 240 ELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPD 319 (524)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCch
Confidence 998877777777788999988888863 344333334444443332110 0 01122221 2344556667778999
Q ss_pred hHhHHHHHHhHhhcCCchhhHHHhhCCC--hHHHHHHhcccchhhHHHHHHHHHHHHhc---CCHHHH---------H-H
Q 011316 258 VLIPALRTVGNIVTGDDMQTQCIINHQA--LPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQI---------Q-A 322 (488)
Q Consensus 258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~---------~-~ 322 (488)
....|+.+++.+-+. .+..+.+.+.|- ...++.-.-+.....-+..+..+|.+++. -.++++ . .
T Consensus 320 aieaAiDalGilGSn-teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcl 398 (524)
T KOG4413|consen 320 AIEAAIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCL 398 (524)
T ss_pred HHHHHHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHH
Confidence 999999999998773 344455554443 23333322222123344566777777765 122211 1 1
Q ss_pred HHH-------cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh
Q 011316 323 IIE-------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 377 (488)
Q Consensus 323 l~~-------~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ 377 (488)
+++ ..-......+++.+.++++..++.++..++... =.....+...+.++...+
T Consensus 399 ifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqP-WalkeifakeefieiVtD 459 (524)
T KOG4413|consen 399 IFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQP-WALKEIFAKEEFIEIVTD 459 (524)
T ss_pred HHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCc-HHHHHHhcCccceeeecc
Confidence 111 133556677788889999999999999997532 233344444455555544
No 78
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=8.8e-06 Score=80.04 Aligned_cols=256 Identities=18% Similarity=0.185 Sum_probs=142.6
Q ss_pred hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh
Q 011316 81 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 160 (488)
Q Consensus 81 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 160 (488)
...+.. +.+|..|+.++-.+-.-+++...++ ++.+-.+|.+.++-+.-.|+.+.-.+|-+.- +.+ .+-.
T Consensus 151 ~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPerl---dLI--Hkny 219 (968)
T KOG1060|consen 151 AVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPERL---DLI--HKNY 219 (968)
T ss_pred HhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhHH---HHh--hHHH
Confidence 334445 6666666666666666555555433 3455556666677777777776666653321 111 1233
Q ss_pred HHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCCh----------------------------hhhhchHHHHHHhhcc
Q 011316 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF----------------------------EQTRPALPALERLIHS 211 (488)
Q Consensus 161 ~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~----------------------------~~~~~~~~~L~~ll~~ 211 (488)
..+.+++ .+-++==+...+..|...|+.. +.... .-..-+++..-.++.+
T Consensus 220 rklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S 298 (968)
T KOG1060|consen 220 RKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS 298 (968)
T ss_pred HHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc
Confidence 4444444 2222222333444444444332 11100 0112234455567778
Q ss_pred CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh----------
Q 011316 212 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII---------- 281 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~---------- 281 (488)
.++.+...++.+...++.... .. .++..|+.+|.++ ..++...+..+..++...+......+
T Consensus 299 ~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp 370 (968)
T KOG1060|consen 299 RNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDP 370 (968)
T ss_pred CCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCH
Confidence 899999999999999986432 22 4567788877664 45777777777777754332211111
Q ss_pred ---------------hC-C---ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011316 282 ---------------NH-Q---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 342 (488)
Q Consensus 282 ---------------~~-~---~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 342 (488)
.. + +++-+...+++. +..+...|+.+|+.++...... ...++..|+.++.+.+..
T Consensus 371 ~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde~ 444 (968)
T KOG1060|consen 371 TQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDEL 444 (968)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccch
Confidence 11 1 222233333444 4456667777777776532221 223577788888888888
Q ss_pred HHHHHHHHHHHhccCCCHHH
Q 011316 343 IKKEAAWAISNATSGGSNEQ 362 (488)
Q Consensus 343 v~~~a~~aL~~l~~~~~~~~ 362 (488)
|..++...+..|......+.
T Consensus 445 Vv~eaV~vIk~Llq~~p~~h 464 (968)
T KOG1060|consen 445 VVAEAVVVIKRLLQKDPAEH 464 (968)
T ss_pred hHHHHHHHHHHHHhhChHHH
Confidence 88888888888887654444
No 79
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.74 E-value=2.9e-06 Score=84.91 Aligned_cols=315 Identities=16% Similarity=0.184 Sum_probs=189.9
Q ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 32 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 32 i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+...++.|.+ .|.+++..|+.++..+...-. +..... -...++.+++-|+. +-.|..|+++++.++...-...
T Consensus 570 ~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~e-L~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~ 644 (1233)
T KOG1824|consen 570 YDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNE-LPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDID 644 (1233)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhh-hHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceee
Confidence 3345566654 568999999999999877542 221111 12456667666665 4568889999999998433332
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
..-.-..+++.+..+++.....++...+.++-.+...... ......+ -++..+..++ ..++-.+...+..+|..+..
T Consensus 645 l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Li-sesdlhvt~~a~~~L~tl~~ 722 (1233)
T KOG1824|consen 645 LSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLI-SESDLHVTQLAVAFLTTLAI 722 (1233)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHh
Confidence 2222335678888888877777777777777666533211 1111111 1233444445 66777888899999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc-----chHhH
Q 011316 189 GKPQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-----SVLIP 261 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----~v~~~ 261 (488)
..+.........+++.++.+++++- ......++.....+........ + ...++.++..+-+ .+...
T Consensus 723 ~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l------~-y~~l~s~lt~PV~~~~~~~l~kq 795 (1233)
T KOG1824|consen 723 IQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDL------D-YISLLSLLTAPVYEQVTDGLHKQ 795 (1233)
T ss_pred cccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCc------c-HHHHHHHHcCCcccccccchhHH
Confidence 8766666677889999999998863 2222333333323322221110 2 4445566655321 12333
Q ss_pred H----HHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011316 262 A----LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 262 a----~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~ 337 (488)
| ..|.+.++...++....+ ....+.++.+...+..+|..|...++.+..+.+.. -..++...+++.++
T Consensus 796 a~~siA~cvA~Lt~~~~~~s~s~----a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~ 867 (1233)
T KOG1824|consen 796 AYYSIAKCVAALTCACPQKSKSL----ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFN 867 (1233)
T ss_pred HHHHHHHHHHHHHHhccccchhH----HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcC
Confidence 3 444444444333222211 22334444444446788889999999998742211 11234557788899
Q ss_pred cCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316 338 NAEFEIKKEAAWAISNATSGGSNEQIKFLVS 368 (488)
Q Consensus 338 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 368 (488)
+++.+++..|..||++++.+.-+.+.+.+.+
T Consensus 868 sp~edvksAAs~ALGsl~vgnl~~yLpfil~ 898 (1233)
T KOG1824|consen 868 SPSEDVKSAASYALGSLAVGNLPKYLPFILE 898 (1233)
T ss_pred CChHHHHHHHHHHhhhhhcCchHhHHHHHHH
Confidence 9999999999999999998766666655543
No 80
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=5.1e-07 Score=90.94 Aligned_cols=247 Identities=16% Similarity=0.203 Sum_probs=190.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.+|..++.|-|. --|+.|+..|..++.-. ...+..-..-|++|..+++|+++- .++|..-+.+-+.|..-++.+.
T Consensus 472 eQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQ--VHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHHH--HHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 4566666666552 34677999999988765 566777778899999999999999 8999999999999888789999
Q ss_pred HHHHhCCCHHHHHHhhCC---CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316 110 RVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l 186 (488)
..+++.++-..+++.|.. -+++-|..|+.+|+.++.+-+-.++.+.+.+.+...+..++.+..+-++.-++-+|+.|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 999988888888888876 34689999999999999887777888999899998899995545677888999999999
Q ss_pred hcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC----chhHHHH------------HHhCCH---HH
Q 011316 187 CRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT----NDKIQAV------------IEAGVC---PR 246 (488)
Q Consensus 187 ~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~----~~~~~~~------------~~~~~l---~~ 246 (488)
-.+.+.. ..-...++...|..++.++-++|+..|+.+|+.+..+. ++....+ ++.-+. -.
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 8887443 33455788999999999999999999999999988753 2222211 121112 24
Q ss_pred HHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHH
Q 011316 247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 280 (488)
Q Consensus 247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 280 (488)
++..++...+-++....-++..+..+.......+
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~v 741 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVV 741 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 5566677777788887778888777655444433
No 81
>PF05536 Neurochondrin: Neurochondrin
Probab=98.72 E-value=5.1e-05 Score=75.60 Aligned_cols=382 Identities=15% Similarity=0.109 Sum_probs=232.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc--HHHHHHcCCHHHHHHhhcCCC------ChhHHHHHHHHHHHh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNI 101 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~lL~~~~------~~~v~~~a~~~L~~l 101 (488)
..+...++.|++.+.+-+..++-.+.+++...+... .+.+.+.=+.+.+-++|.++. ....+.-|+.+|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 457778899999888889999999999887653222 234667777888889998732 156778888899999
Q ss_pred cCCCchhhHHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011316 102 ASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180 (488)
Q Consensus 102 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~ 180 (488)
+. .|+....---.+-||.|++.+.+.+. .+...|+.+|..++.. +..++.+.+.|.++.|.+.+.+ .+.....++
T Consensus 85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al 160 (543)
T PF05536_consen 85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEIAL 160 (543)
T ss_pred cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence 98 55554222122569999999988666 9999999999999954 5568889999999999999844 556678888
Q ss_pred HHHHHhhcCCCC----CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh-HHHHHH----hCCHHHHHHhc
Q 011316 181 WTLSNFCRGKPQ----PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-IQAVIE----AGVCPRLVELL 251 (488)
Q Consensus 181 ~~L~~l~~~~~~----~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~-~~~~~~----~~~l~~L~~lL 251 (488)
.++.+++..... ........+++.+...+.......+-.++..|..+....+.. ...... ..+...+..+|
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 888888765421 122233456677777777666777778888888887655311 111111 13334455555
Q ss_pred CC-CCcchHhHHHHHHhHhhcCCchhhHHHh-hC-----CChHHHHHH---------------hcccchhh---------
Q 011316 252 RH-PSPSVLIPALRTVGNIVTGDDMQTQCII-NH-----QALPCLLDL---------------LTQNYKKS--------- 300 (488)
Q Consensus 252 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~-----~~~~~L~~l---------------L~~~~~~~--------- 300 (488)
.+ ..+.-|..++...+.+..... .+.++ +. .++-.++++ .+.+....
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf 318 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCF 318 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHH
Confidence 55 356677777777776665311 11111 00 122222221 11111111
Q ss_pred -HHHHHHHHHHHHhcC-----CHHHHHHHHH--cCChHHHHHHHhcC------ChhHHHHHHHHHHHhccCCCHHHHHHH
Q 011316 301 -IKKEACWTISNITAG-----NVNQIQAIIE--AGIIGPLVNLLLNA------EFEIKKEAAWAISNATSGGSNEQIKFL 366 (488)
Q Consensus 301 -v~~~a~~~L~nl~~~-----~~~~~~~l~~--~~~l~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~~l 366 (488)
+-...+..+.+-... +++....+.. .+.+...+.+|++. ++.....+.++|+......+...++.+
T Consensus 319 ~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v 398 (543)
T PF05536_consen 319 SILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV 398 (543)
T ss_pred HHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 111111222221110 2333333332 34566666676653 333667788888888776555545554
Q ss_pred HHCCChHHHHhhcCCCCHH----------HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh
Q 011316 367 VSQGCIKPLCDLLNCPDPR----------IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL 432 (488)
Q Consensus 367 ~~~~~~~~L~~ll~~~~~~----------v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l 432 (488)
. ++++.++++.+..... .+.-.+=+|..+..-.. .++.+...|+.+.+.+.
T Consensus 399 ~--~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~-------------gr~~l~~~~g~~~l~~~ 459 (543)
T PF05536_consen 399 Y--GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE-------------GRKILLSNGGWKLLCDD 459 (543)
T ss_pred H--HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH-------------HHHHHHhCCcHHHHHHH
Confidence 3 6889999888754332 33344444444432211 47777778886666653
No 82
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.3e-05 Score=76.41 Aligned_cols=255 Identities=15% Similarity=0.173 Sum_probs=180.0
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 153 (488)
.-+-++.+|.++. |.+|..|+..+..+....|+... ..+|.|..-|.++++.++..|..+++.|++.+|.. .
T Consensus 145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y 216 (877)
T KOG1059|consen 145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y 216 (877)
T ss_pred HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence 4456778899998 89999999999999986666544 34799999999999999999999999999888753 1
Q ss_pred HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHH--hccC
Q 011316 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSY--LSDG 230 (488)
Q Consensus 154 ~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~--l~~~ 230 (488)
+ ..-|.+.++|-.+.+.=+....+..+.+|+.-.| .....+++.+..++++. -..+...+..++.. ++.+
T Consensus 217 L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 217 L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 1 2355666777555555566667777777765432 23356788888998876 35666666666543 3333
Q ss_pred CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310 (488)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~ 310 (488)
.++....+ . -+++.|--++.+.++.++..++-+++.+....+...+. .-+.+++.|.+. ++.+|..|+..+.
T Consensus 290 ~~d~~asi-q-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSASI-Q-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLLY 361 (877)
T ss_pred CCCcHHHH-H-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHHH
Confidence 32222211 1 34677777888999999999999999999876655442 356789999999 9999999999998
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCC
Q 011316 311 NITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~ 358 (488)
-+... +++.. ++..|+..+... ....|.+.+.-+..+++..
T Consensus 362 gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 362 GMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 88753 33333 344444444433 3466777777666666544
No 83
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.65 E-value=1.3e-05 Score=75.67 Aligned_cols=335 Identities=16% Similarity=0.062 Sum_probs=208.1
Q ss_pred HHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-ccHhHH
Q 011316 98 LTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSML 176 (488)
Q Consensus 98 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~v~ 176 (488)
|..+....++.+..+.-....+.+..++-+++.++|..+.+++..+..+... -..+.+.+.-..++..+.++ .+..-+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHH
Confidence 4444444555555554444556666555555599999999999999877654 45555656555555666443 344568
Q ss_pred HHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc
Q 011316 177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 256 (488)
Q Consensus 177 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 256 (488)
.+|+..+..+..-.. .....-.+++..++.+..+.++..+..++.+++.++-.++ +.+...|++..+.+.+.++..
T Consensus 86 ~QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~ 161 (371)
T PF14664_consen 86 EQALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSF 161 (371)
T ss_pred HHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccH
Confidence 899999998887642 2223457889999999999999999999999999998776 457888999999999987655
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc------chh--hHHHHHHHHHHHHhcCCHHHHHHHHH-cC
Q 011316 257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIE-AG 327 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~-~~ 327 (488)
++....+.++..+.. .+..++.+...--++.++.-+.+. .+. +.-..+..++..+.+.=+...-...+ ..
T Consensus 162 ~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~ 240 (371)
T PF14664_consen 162 SISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFR 240 (371)
T ss_pred hHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCch
Confidence 678888888888877 444555444433344454444322 022 23344555555555432221111111 14
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH------CCCh---HHHHhhcCCCC---HHHHHHHHHHHH
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS------QGCI---KPLCDLLNCPD---PRIVTVCLEGLE 395 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~------~~~~---~~L~~ll~~~~---~~v~~~al~~L~ 395 (488)
.+..|+..+..+++++|+..+..+..+..-..+........ .+-. ..+..-..... +.....-...+.
T Consensus 241 ~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~ 320 (371)
T PF14664_consen 241 GLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVN 320 (371)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHH
Confidence 68889999999999999999999999987554332222111 0111 00000000000 000000001111
Q ss_pred HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcC
Q 011316 396 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWV 453 (488)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~ 453 (488)
+... -....|.+.|.++.|.++..+. ++.+..+|.-++.+++.
T Consensus 321 ~y~a---------------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 321 HYLA---------------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred HHHH---------------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 1110 0355678899999999997665 88999999999987653
No 84
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.2e-05 Score=77.55 Aligned_cols=346 Identities=17% Similarity=0.188 Sum_probs=220.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+..+++.+..+.+.+|.....+|..+......... ..+.+.+.+++...+ ..-+..+.+.+..+..+. .-
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i 167 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GI 167 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HH
Confidence 3456677777888889998888888876554322222 235677888888777 788888999998888733 33
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHH-HHHHHHhhhhCC-CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVRE-QAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~-~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
..+.+.+++..+.....+.....++ .++.+....+.. .+.....+.. .++.++... .+....++..+..+...+.
T Consensus 168 ~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~ 244 (569)
T KOG1242|consen 168 ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIM 244 (569)
T ss_pred hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHH
Confidence 4455678889999988875444433 233322222211 1111112221 344444444 4556778887777776665
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
..-+. ....-++|.++.-+....+.....++..++.++...+.+.. ..-..++|.+.+.|.+..++++..+..++.
T Consensus 245 ~~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~ 320 (569)
T KOG1242|consen 245 RCLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLL 320 (569)
T ss_pred HhcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHH
Confidence 44311 12233445555555445788889999999999988776655 444589999999999999999999999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-C--CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-G--NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
.++.--+.. . +. ..++.+++.+.++ ...+ .++...|+.=.. + .+... .-++|.|.+-+...+...+
T Consensus 321 ~~~svidN~-d--I~-~~ip~Lld~l~dp-~~~~-~e~~~~L~~ttFV~~V~~psL-----almvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 321 KFGSVIDNP-D--IQ-KIIPTLLDALADP-SCYT-PECLDSLGATTFVAEVDAPSL-----ALMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHHHhhccH-H--HH-HHHHHHHHHhcCc-ccch-HHHHHhhcceeeeeeecchhH-----HHHHHHHHHHHhhccchhh
Confidence 888632211 0 11 3567788888777 3222 223333331111 0 11111 1146666677777788899
Q ss_pred HHHHHHHHHhccCC-CHH-HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011316 345 KEAAWAISNATSGG-SNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 345 ~~a~~aL~~l~~~~-~~~-~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
+.++..+.|++.-- ++. ..+++-+ +++.|-..+.+..|++|..+..+|..+.+....
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 99999999998644 333 3344333 677777777888999999999999888776443
No 85
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=2.8e-07 Score=86.36 Aligned_cols=310 Identities=13% Similarity=0.104 Sum_probs=195.7
Q ss_pred HHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc
Q 011316 133 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS 211 (488)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~ 211 (488)
...++.+|..+++.....|.-+.+..+.+.|++.| ..++..+...+...++++.-.- +-.......+++..++.++.+
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 34455566666665556677778888899999999 5555555666777777766544 444555668999999999999
Q ss_pred CChhHHHHHHHHHHHhccCCchhHH-HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch---hhHHHhhC----
Q 011316 212 NDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH---- 283 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~---- 283 (488)
.|..++....|.++.+..+..+..+ ..+..-++..++...+++...++...+.++.|+.+.+.. .....++.
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ 564 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR 564 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence 9999999999999999876553322 244446789999999999999999999999999984332 12222221
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcC-----------ChhHHHHHHHHH
Q 011316 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNA-----------EFEIKKEAAWAI 351 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~-----------~~~v~~~a~~aL 351 (488)
-+.+.+.+.+... ++-.-...++.|.+++..+......+.+ ..++..+..++... ..++-..-....
T Consensus 565 ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~ 643 (743)
T COG5369 565 YLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI 643 (743)
T ss_pred HHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence 2456677777777 6666667789999888865554444443 34555555544321 111212222223
Q ss_pred HHhccCCCHHHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011316 352 SNATSGGSNEQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 428 (488)
Q Consensus 352 ~~l~~~~~~~~~~~l~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 428 (488)
.++..+.+ ...+..... +.+-..=+ .++.++-....|.+.++....+..+.. +..-...+.+.+.|.-+-
T Consensus 644 v~l~e~~d-~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt---ratveR~~iL~~~G~~e~ 716 (743)
T COG5369 644 VNLSENSD-KFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT---RATVERIQILCANGIREW 716 (743)
T ss_pred eccccccc-ccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccc---hhhHHHHHHHHHccHHHH
Confidence 33332211 110000000 11111111 234567677777777765433322211 111124677888999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHh
Q 011316 429 IENLQSHDNTEIYEKAVKILETY 451 (488)
Q Consensus 429 l~~l~~~~~~~v~~~a~~~l~~~ 451 (488)
++.++.++++.|++++..++.++
T Consensus 717 l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 717 LVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHhccCcHHHHHHHHHHHHhh
Confidence 99999999999999999988764
No 86
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=2e-07 Score=87.32 Aligned_cols=299 Identities=14% Similarity=0.133 Sum_probs=202.9
Q ss_pred HHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc
Q 011316 92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA 171 (488)
Q Consensus 92 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~ 171 (488)
.+++.+|..++.+-.-.|.-+.+..+.+.|+++|+.++..+...+...++|..-.-...+..+++.+++..++.++ .+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-MSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-hcc
Confidence 4455567777775566778888899999999999998888888888889998866666888999999999999999 677
Q ss_pred cHhHHHHHHHHHHHhhcCCC-CCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCch---hHHHHHHh----C
Q 011316 172 KLSMLRNATWTLSNFCRGKP-QPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND---KIQAVIEA----G 242 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~~~~-~~~~~-~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~----~ 242 (488)
|..++.+..|.+.++..+.. ..+.. ...-.+..++.+..++...++..++..+.|+..+... .....++. -
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 88999999999999988763 33333 3356788899999999999999999999999864332 11212221 1
Q ss_pred CHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHHHHHHhccc---------c-hhhHHHHHHHHHHH
Q 011316 243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQN---------Y-KKSIKKEACWTISN 311 (488)
Q Consensus 243 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~---------~-~~~v~~~a~~~L~n 311 (488)
+...+.+.+...+|-.....+.+|.+++..++.....+++ ...+..+..+|... + ...+-..-..+..+
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 4456666677778877778899999999877766655553 34455555554221 0 11111112222233
Q ss_pred HhcCCHHHHHHHHHcCCh--HHHHHHHhc----CChhHHHHHHHHHHHhccC--------CCHHHHHHHHHCCChHHHHh
Q 011316 312 ITAGNVNQIQAIIEAGII--GPLVNLLLN----AEFEIKKEAAWAISNATSG--------GSNEQIKFLVSQGCIKPLCD 377 (488)
Q Consensus 312 l~~~~~~~~~~l~~~~~l--~~L~~ll~~----~~~~v~~~a~~aL~~l~~~--------~~~~~~~~l~~~~~~~~L~~ 377 (488)
+...+.+.. .+.. |.+= .++. ++.+.-.+..|...|+.-. .+.+.++.|.+.|.-+.+..
T Consensus 646 l~e~~d~f~-----r~~~~~p~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k 719 (743)
T COG5369 646 LSENSDKFK-----RLVLTTPHLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVK 719 (743)
T ss_pred ccccccccc-----cceecCCCcc-ccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHH
Confidence 322111110 1111 1111 1122 1345666777777775421 13467788899999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHH
Q 011316 378 LLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 378 ll~~~~~~v~~~al~~L~~l 397 (488)
+..++.+.+++.+-.+|.++
T Consensus 720 ~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 720 IQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HhccCcHHHHHHHHHHHHhh
Confidence 99999999999998888765
No 87
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=2.2e-05 Score=76.93 Aligned_cols=318 Identities=15% Similarity=0.073 Sum_probs=164.2
Q ss_pred HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011316 80 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 159 (488)
Q Consensus 80 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 159 (488)
+=|++++ +-+|-..++.|+.+=. ++..+ ..+|.+...|++.++-+|++|..++..+-..... .+ .++
T Consensus 106 kDLQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~--pDa 172 (948)
T KOG1058|consen 106 KDLQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LI--PDA 172 (948)
T ss_pred hhccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hc--CCh
Confidence 3356666 6777777777766643 33333 3478888899999999999999999888644211 11 123
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhccCCchhHH
Q 011316 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQ 236 (488)
Q Consensus 160 i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~ 236 (488)
-+.+-..|....|+.-+++|...|...-.. .++..+...+. +-++.++...+..+...+...+....
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~ 242 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA 242 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh
Confidence 334445555667777777777666543221 12222222221 12344444445555554443332222
Q ss_pred HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc-----------------hhhHHHh---------------hCC
Q 011316 237 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-----------------MQTQCII---------------NHQ 284 (488)
Q Consensus 237 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-----------------~~~~~~~---------------~~~ 284 (488)
..+..+..+|.+.++.++..|..+|..++.... .....++ =.+
T Consensus 243 -----~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~ 317 (948)
T KOG1058|consen 243 -----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQG 317 (948)
T ss_pred -----HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHH
Confidence 334445555554444444444444444433111 0000000 012
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHH-hcC------ChhHHHHHHHHHHHhcc
Q 011316 285 ALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLL-LNA------EFEIKKEAAWAISNATS 356 (488)
Q Consensus 285 ~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll-~~~------~~~v~~~a~~aL~~l~~ 356 (488)
.+.-++++|+++ +-++|+.+......++.+ +-+ . ++..|-.=+ +.. +.+.|+.-..++...+.
T Consensus 318 l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNve---d-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav 388 (948)
T KOG1058|consen 318 LIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVE---D-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV 388 (948)
T ss_pred HHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHH---H-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh
Confidence 333344455555 556666666555555542 111 1 122221111 111 12345555666666654
Q ss_pred CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC
Q 011316 357 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD 436 (488)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~ 436 (488)
.- ++... .+++.|++.+.+.++.....++..++..+...+... ..+. -..++.+-.-.
T Consensus 389 ~F-p~~aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------------~~ii----~~l~~~~~~ir 446 (948)
T KOG1058|consen 389 KF-PEVAA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------------ASII----EKLLETFPQIR 446 (948)
T ss_pred cC-hHHHH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------------HHHH----HHHHHhhhhhc
Confidence 43 23322 368888888888888777777777777776655432 2121 11223333334
Q ss_pred CHHHHHHHHHHHHHhcCCCC
Q 011316 437 NTEIYEKAVKILETYWVEED 456 (488)
Q Consensus 437 ~~~v~~~a~~~l~~~~~~~~ 456 (488)
+.++..-|.|++..|.+.++
T Consensus 447 S~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 447 SSKICRGALWILGEYCEGLS 466 (948)
T ss_pred ccccchhHHHHHHHHHhhhH
Confidence 56777788888888777665
No 88
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.7e-05 Score=70.28 Aligned_cols=340 Identities=14% Similarity=0.144 Sum_probs=213.3
Q ss_pred hhHHHHhhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHH--HHhhc
Q 011316 6 IDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--IEFLS 83 (488)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L--~~lL~ 83 (488)
+.|.+--+-++.+.++.. ....+.++.++.++..+|.++...|...+..++-. +.....+.++.....+ .++-.
T Consensus 106 igcilEdcDtnaVseill--vvNaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaa 181 (524)
T KOG4413|consen 106 IGCILEDCDTNAVSEILL--VVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAA 181 (524)
T ss_pred hhHHHhcCchhhHHHHHH--HhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHh
Confidence 445444444444433322 11237889999999999999999999999997654 3444555555444433 23333
Q ss_pred CCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHH
Q 011316 84 RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMP 162 (488)
Q Consensus 84 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 162 (488)
..+ .-.|...+..+..+.+-+++......+.|.+..|..-++. .+.-++.+++.....++...- .++.+.+.|.+..
T Consensus 182 kcn-diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdl 259 (524)
T KOG4413|consen 182 KCN-DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDL 259 (524)
T ss_pred hhh-hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHH
Confidence 334 4678888888999999899999999999999999988876 788889999999999985443 4667777788888
Q ss_pred HHHHhc-ccccHhHHHHHHHHHHHhhcCCCCC------ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH
Q 011316 163 LLAQFN-EHAKLSMLRNATWTLSNFCRGKPQP------LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 235 (488)
Q Consensus 163 l~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~------~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 235 (488)
+...+. .++++--.-.++.....+....... .......++....+++..+|+..+..+..+++.+.++....
T Consensus 260 icnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGa- 338 (524)
T KOG4413|consen 260 ICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGA- 338 (524)
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchh-
Confidence 877773 2334443444555555554432111 11111334555567778899999999999999998765433
Q ss_pred HHHHHhCC--HHHH-HHhcCCCCcchHhHHHHHHhHhhcCC---chh----------hHHHh-------hCCChHHHHHH
Q 011316 236 QAVIEAGV--CPRL-VELLRHPSPSVLIPALRTVGNIVTGD---DMQ----------TQCII-------NHQALPCLLDL 292 (488)
Q Consensus 236 ~~~~~~~~--l~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~----------~~~~~-------~~~~~~~L~~l 292 (488)
+.+.+.|- ...+ ......+...-+..++.+|.+++... +++ +..++ +..-...+..+
T Consensus 339 dlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgi 418 (524)
T KOG4413|consen 339 DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGI 418 (524)
T ss_pred HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHH
Confidence 54555443 2222 23333333445667778888777531 111 11111 12345667778
Q ss_pred hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC---ChhHHHHHHHHHHH
Q 011316 293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISN 353 (488)
Q Consensus 293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~~ 353 (488)
++.+ .++++..+..++..++...=....-+.+.+++..+.+.-... ..+-+.+++.++.+
T Consensus 419 lqQp-fpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 419 LQQP-FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred HcCC-ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 8888 899999999999999876333333333456666555433222 22344555555543
No 89
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.59 E-value=2.1e-05 Score=75.09 Aligned_cols=242 Identities=17% Similarity=0.046 Sum_probs=162.9
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
..++.++..|. .+++.+...++..+.. .+ .. ..+..|++.|.+.+ +.++..++.+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~----- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLA---QE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG----- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhc---cC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc-----
Confidence 34666777774 4556666655554432 11 11 13778888888887 7888888888876543
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
....+.|+.++.+.++.++..++.+++..-. ...+.+...+ ++.++.++..++.+|..+..
T Consensus 116 ------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 116 ------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPR 176 (410)
T ss_pred ------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc
Confidence 2446788888888888888888877766321 1345677777 68888899999999988765
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
. ..++.|...+.+.++.|+..++.++..+.. + ..+..+..............+..++..
T Consensus 177 ~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal 235 (410)
T TIGR02270 177 R----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAV 235 (410)
T ss_pred c----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHh
Confidence 4 356667778888899999999888876633 1 122334443333333333333333333
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
. ..+ ..++.|..+++++ . ++..++++++.+-.. ..++.|+..+.+. .++..|.
T Consensus 236 ~--~~~---------~a~~~L~~ll~d~-~--vr~~a~~AlG~lg~p-----------~av~~L~~~l~d~--~~aR~A~ 288 (410)
T TIGR02270 236 A--GGP---------DAQAWLRELLQAA-A--TRREALRAVGLVGDV-----------EAAPWCLEAMREP--PWARLAG 288 (410)
T ss_pred C--Cch---------hHHHHHHHHhcCh-h--hHHHHHHHHHHcCCc-----------chHHHHHHHhcCc--HHHHHHH
Confidence 2 111 4677888888876 3 899999999977432 3688888887764 3999999
Q ss_pred HHHHHhcc
Q 011316 349 WAISNATS 356 (488)
Q Consensus 349 ~aL~~l~~ 356 (488)
.++..++-
T Consensus 289 eA~~~ItG 296 (410)
T TIGR02270 289 EAFSLITG 296 (410)
T ss_pred HHHHHhhC
Confidence 99999985
No 90
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=1.9e-05 Score=69.50 Aligned_cols=272 Identities=14% Similarity=0.191 Sum_probs=175.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+..++.++.+.+|.++..|...+..+... ..+.+. +.-.++.+.+++.... + ...|+.++.|++. .++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence 44689999999999999999999887654 122222 3346788889998877 5 6778999999999 78888
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-----CChHHHHHHhcccc-c-HhHHHHHHHH
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHA-K-LSMLRNATWT 182 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~i~~l~~~l~~~~-~-~~v~~~a~~~ 182 (488)
+.+++. ++..+...+.++...+.+..+.+|+|++++...+....... ..+..++....+.+ + ..-..+.+..
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 888876 77777777877777888889999999998887665544332 23444444432222 2 1334566777
Q ss_pred HHHhhcCCCCCChhhhhch--HHHHHHhhccCChhH-HHHHHHHHHHhccCCchhHHHHHHh--CCHHHHH---------
Q 011316 183 LSNFCRGKPQPLFEQTRPA--LPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEA--GVCPRLV--------- 248 (488)
Q Consensus 183 L~~l~~~~~~~~~~~~~~~--~~~L~~ll~~~~~~v-~~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~--------- 248 (488)
++++++............. .+.+..+- +.+..+ +...+.+|.|.|-..... ..+++. .+++.++
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft-~~~s~vRr~GvagtlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFT-SEDSQVRRGGVAGTLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhccc-ccchhhhccchHHHHHhhhccchhH-HHHhcchHHHHHHHHhhcCCcccc
Confidence 8888876644433333322 22233332 344444 345667777766543322 112211 1222221
Q ss_pred ------------HhcC-----CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316 249 ------------ELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 249 ------------~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
+.|. .+++.+|..-+.+|..+|. ....++.+...|+.+.+-.+=+...+++++..+-.....
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3332 2567899999999999988 455677777778877777766665577777766666666
Q ss_pred HhcC
Q 011316 312 ITAG 315 (488)
Q Consensus 312 l~~~ 315 (488)
+...
T Consensus 313 Lv~~ 316 (353)
T KOG2973|consen 313 LVRL 316 (353)
T ss_pred HHhc
Confidence 6553
No 91
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=8.1e-05 Score=75.68 Aligned_cols=313 Identities=12% Similarity=0.174 Sum_probs=203.4
Q ss_pred ChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHH
Q 011316 19 DPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWA 97 (488)
Q Consensus 19 ~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~ 97 (488)
.++|.+.....+.++-+...+.+ .++.++..|+..+..+.+. .+....+...+.+..|+.+|++. |..|..++.+
T Consensus 1760 asvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~v 1835 (2235)
T KOG1789|consen 1760 ASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDV 1835 (2235)
T ss_pred hhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHH
Confidence 34455545556778888888875 7789999999998886653 58889999999999999999876 5789999999
Q ss_pred HHHhcCCCchhhHHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCC---chhHHHHHh----------cCChHHH
Q 011316 98 LTNIASGTSENTRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDS---PKCRDLVLS----------NGALMPL 163 (488)
Q Consensus 98 L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~i~~l 163 (488)
|..+++ +++....-.+.|++..+..+ ..+.++..|..++..++.+..+. |..+-.++. .+.-+..
T Consensus 1836 LYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAa 1914 (2235)
T KOG1789|consen 1836 LYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAA 1914 (2235)
T ss_pred HHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHH
Confidence 999999 77777777777777777664 45678999999999999987542 211111111 0111333
Q ss_pred HHHhcc-cccH------hHHHHHHHHHHHhhc----CC---C--------------------------------------
Q 011316 164 LAQFNE-HAKL------SMLRNATWTLSNFCR----GK---P-------------------------------------- 191 (488)
Q Consensus 164 ~~~l~~-~~~~------~v~~~a~~~L~~l~~----~~---~-------------------------------------- 191 (488)
+..+.. ++++ ..+......+..+.. .. +
T Consensus 1915 VH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~L 1994 (2235)
T KOG1789|consen 1915 VHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNL 1994 (2235)
T ss_pred HHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcc
Confidence 333321 1111 222222222222211 00 0
Q ss_pred CCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316 192 QPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 192 ~~~~~~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
........+.+..+.+++..++ .....-...++..+.+..+.....+-..|.+|.++..+...+..+-..|+++|..+
T Consensus 1995 R~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~L 2074 (2235)
T KOG1789|consen 1995 RHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHEL 2074 (2235)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHH
Confidence 0111223444555556665433 22223333344444555555555566669999999999887777779999999999
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcC
Q 011316 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA 339 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~ 339 (488)
+. +..+.+.+.....+..+++.+... ....--|+.+|..+.. ...+.....++.|.+|.|+.+|...
T Consensus 2075 se-n~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2075 SE-NQFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred hh-ccHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 87 555666676667777788877665 2334477788887776 3455666677899999999999875
No 92
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.54 E-value=1.6e-06 Score=66.24 Aligned_cols=154 Identities=10% Similarity=0.059 Sum_probs=125.5
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011316 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 363 (488)
+.+..|+.-.+...+.+.+.....-|.|++.. |-+...+.+.++++..+..+...+..+++.++.+|+|++. ++...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~ 92 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNA 92 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHH
Confidence 34566777666665888999999999999876 7777888899999999999999999999999999999987 45778
Q ss_pred HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011316 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443 (488)
Q Consensus 364 ~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 443 (488)
+.+.+.++++.++..++++...++..++.++..+...+.. .++.+-....++.++.+..+.+-+.+..
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL 160 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT------------ERDELLSPAVVRTVQRWRESKSHDERNL 160 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999998888888888766544443 3666666667888888877777777888
Q ss_pred HHHHHHHhc
Q 011316 444 AVKILETYW 452 (488)
Q Consensus 444 a~~~l~~~~ 452 (488)
|...++++.
T Consensus 161 a~~fl~~~~ 169 (173)
T KOG4646|consen 161 ASAFLDKHV 169 (173)
T ss_pred HHHHHHhhc
Confidence 888777654
No 93
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=4.4e-05 Score=73.86 Aligned_cols=221 Identities=14% Similarity=0.137 Sum_probs=150.3
Q ss_pred HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-----hhHH
Q 011316 162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-----DKIQ 236 (488)
Q Consensus 162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~-----~~~~ 236 (488)
.++.+. .+.|..|+.+|+.+|..|..+. ..-.-.....++++.+.+..|+..|+..+.......+ ...+
T Consensus 202 ~l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 202 GLIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 356666 7788999999999999888743 2223456678889999999999999777665543221 1111
Q ss_pred HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH--hc
Q 011316 237 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI--TA 314 (488)
Q Consensus 237 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl--~~ 314 (488)
.=....++..+...+.+-+..+|..|...|+.+-.-+++...+.++..++..+-..=. ..+......++- ++
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~------ahkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT------AHKRPKALYSSGEWSS 349 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh------cccchHHHHhcCCccc
Confidence 1122267788888999999999999999999987766665555554433332211110 011111112221 11
Q ss_pred -----------CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 011316 315 -----------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383 (488)
Q Consensus 315 -----------~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 383 (488)
...+.-..++.+|.--.++.-+.+.-.+||..|...++.++... +..... .++.|++++.++.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHH
Confidence 11223445777888888888888888899999999999999754 333333 5889999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011316 384 PRIVTVCLEGLENILKA 400 (488)
Q Consensus 384 ~~v~~~al~~L~~l~~~ 400 (488)
..+|..++.+|..|...
T Consensus 424 ~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 94
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00027 Score=69.06 Aligned_cols=290 Identities=16% Similarity=0.161 Sum_probs=185.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHH
Q 011316 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (488)
+..+.+=|.+.+ +....-|+.+++|+.+ .+.++.+. +-+-++|.+ ...-++..|+-+|..|.+.+|+.
T Consensus 113 in~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl-- 182 (938)
T KOG1077|consen 113 INSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL-- 182 (938)
T ss_pred HHHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc--
Confidence 344555566777 7888999999999976 45555543 223355655 34678888888888888776653
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc-------------CChhHHHH
Q 011316 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-------------NDDEVLTD 219 (488)
Q Consensus 153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-------------~~~~v~~~ 219 (488)
+-..+...+++.+| ++.+-.+...+...+..++...+..........+..|..+... +.+-++..
T Consensus 183 -~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 183 -VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred -cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 22234678899999 6666777788888888888877655555555555555555431 34677888
Q ss_pred HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC----C---cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316 220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP----S---PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 292 (488)
Q Consensus 220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 292 (488)
+++.|.+.-...+.-.. ..-..+++.++...+.+ + ...+.+.+.-.-+++.+.+..-..+. ..+..|-++
T Consensus 261 l~rlLq~~p~~~D~~~r-~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f 337 (938)
T KOG1077|consen 261 LLRLLQIYPTPEDPSTR-ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF 337 (938)
T ss_pred HHHHHHhCCCCCCchHH-HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence 88888887432221111 11113445555444421 1 12333344444455544443333222 357788889
Q ss_pred hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCC
Q 011316 293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC 371 (488)
Q Consensus 293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~ 371 (488)
|.+. ...+|.-|+...+.++.. ......+-.+ .+.++..|+ ..|..+|+.|+..|..++... ..+. .
T Consensus 338 ls~r-E~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~-----I 405 (938)
T KOG1077|consen 338 LSHR-ETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQ-----I 405 (938)
T ss_pred hhcc-cccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh---hHHH-----H
Confidence 9998 889999999999999875 2223333332 666777788 669999999999999998654 3444 4
Q ss_pred hHHHHhhcCCCCHHHHHHHH
Q 011316 372 IKPLCDLLNCPDPRIVTVCL 391 (488)
Q Consensus 372 ~~~L~~ll~~~~~~v~~~al 391 (488)
+.-|.++|.+.+..+++...
T Consensus 406 V~elLqYL~tAd~sireeiv 425 (938)
T KOG1077|consen 406 VAELLQYLETADYSIREEIV 425 (938)
T ss_pred HHHHHHHHhhcchHHHHHHH
Confidence 66777888888877776543
No 95
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00017 Score=70.41 Aligned_cols=338 Identities=15% Similarity=0.128 Sum_probs=199.0
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011316 77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 156 (488)
Q Consensus 77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 156 (488)
.-+++|+++.. .-+.-.-..+..+...+.+..+. ++..+.+=|.+.++.....|+.+++|+-+. +.++.+.
T Consensus 78 EaV~LLss~ky-sEKqIGYl~is~L~n~n~dl~kl-----vin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~- 148 (938)
T KOG1077|consen 78 EAVNLLSSNKY-SEKQIGYLFISLLLNENSDLMKL-----VINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA- 148 (938)
T ss_pred HHHHHhhcCCc-cHHHHhHHHHHHHHhcchHHHHH-----HHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh-
Confidence 34567766653 22222333344444433332222 245555666678889999999999999532 2233322
Q ss_pred cCChHHHHHHhccc-ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH
Q 011316 157 NGALMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 235 (488)
Q Consensus 157 ~~~i~~l~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 235 (488)
.-+-++|... ...-++..++.++..|.+.. .......+....++.+|.+.+..+...+...+..++...++..
T Consensus 149 ----~DI~KlLvS~~~~~~vkqkaALclL~L~r~s--pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y 222 (938)
T KOG1077|consen 149 ----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKS--PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY 222 (938)
T ss_pred ----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcC--ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH
Confidence 2233555333 34457788888888888774 3334445788899999999999999999999999997776554
Q ss_pred HHHHHhCCHHHHHHhcC-------------CCCcchHhHHHHHHhHhhcCCchh-hHHHhhCCChHHHHHHhcccc----
Q 011316 236 QAVIEAGVCPRLVELLR-------------HPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNY---- 297 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~-------------~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~lL~~~~---- 297 (488)
...+- ..+..|..+.. -+.|.++...++.|.++-...+.. +..+. .+++.++...+.+.
T Consensus 223 k~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~ 299 (938)
T KOG1077|consen 223 KTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKK 299 (938)
T ss_pred hhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccc
Confidence 42211 12222222221 145677888888888774432222 22221 23444444444211
Q ss_pred --hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHH
Q 011316 298 --KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL 375 (488)
Q Consensus 298 --~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L 375 (488)
....+...++-..+++.+-+..-..+. ..+..|.+++.+....+|--|+..++.++..... ...+.. -.+.+
T Consensus 300 vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s--~davK~--h~d~I 373 (938)
T KOG1077|consen 300 VQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLASSEFS--IDAVKK--HQDTI 373 (938)
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHhccch--HHHHHH--HHHHH
Confidence 122333444445566553222112222 3678899999999999999999999999876422 122211 26777
Q ss_pred HhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 376 CDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 376 ~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+..|+ ..|..+|..+++.|..++..+.. +... .+.++.|.....+-.+++..+++.+-++|..
T Consensus 374 i~sLkterDvSirrravDLLY~mcD~~Na-------------k~IV--~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 374 INSLKTERDVSIRRRAVDLLYAMCDVSNA-------------KQIV--AELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred HHHhccccchHHHHHHHHHHHHHhchhhH-------------HHHH--HHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 88888 78999999999999999866542 2222 2334555554444455666666666666543
No 96
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.50 E-value=1.8e-05 Score=74.63 Aligned_cols=314 Identities=18% Similarity=0.168 Sum_probs=197.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhH
Q 011316 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+.+...+-+++.+++..+.++++.++.+ ....+.+.+.++--.++.-|..++ +..-|++|++.+..+.... +..+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~ 103 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK 103 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc
Confidence 34455455566699999999999998875 466777777776666666665543 3567899999998888732 2222
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
. +..|++..++.+.++.+..++..|+.+|+.++-.+|+ .+...|++..+++.+.+ +..++....+.++..+...+
T Consensus 104 ~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 104 E-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred c-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCc
Confidence 1 2557899999999999999999999999999988775 67889999999999854 44458888899999998887
Q ss_pred CCCChhhhhchHHHHHHhhcc-------CCh--hHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCCCCcchHh
Q 011316 191 PQPLFEQTRPALPALERLIHS-------NDD--EVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSVLI 260 (488)
Q Consensus 191 ~~~~~~~~~~~~~~L~~ll~~-------~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~ 260 (488)
..........-++.++.-+.+ ++. +....+..++..+.+.=+...-.-.+. ..+..++..|..+.+++|.
T Consensus 179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~ 258 (371)
T PF14664_consen 179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK 258 (371)
T ss_pred chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence 554443332233333333221 122 345555556665554433222211111 4678899999999999999
Q ss_pred HHHHHHhHhhcCCch-hhHHHh------hCCCh---HHHHHHhcccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCCh
Q 011316 261 PALRTVGNIVTGDDM-QTQCII------NHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGII 329 (488)
Q Consensus 261 ~a~~~L~~l~~~~~~-~~~~~~------~~~~~---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l 329 (488)
..+..+..+..-... ...... ..+-. ..+..-.... .. ....-..--.++..+. .-....+++.|++
T Consensus 259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~-~~-~~~~~~~~~~~l~~~y~aLll~ili~~gL~ 336 (371)
T PF14664_consen 259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEA-KS-ILPHRSSKRPNLVNHYLALLLAILIEAGLL 336 (371)
T ss_pred HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccccccc-cc-ccCccccccccHHHHHHHHHHHHHHHcChH
Confidence 999999888764321 111111 11111 0000000000 00 0000000011221111 1122345689999
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHHhc
Q 011316 330 GPLVNLLLNA-EFEIKKEAAWAISNAT 355 (488)
Q Consensus 330 ~~L~~ll~~~-~~~v~~~a~~aL~~l~ 355 (488)
+.|+++..+. +..+..+|...|+.+.
T Consensus 337 ~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 337 EALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 9999999998 8889999999888775
No 97
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.49 E-value=6e-05 Score=72.06 Aligned_cols=244 Identities=18% Similarity=0.061 Sum_probs=170.2
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (488)
..++.++..|.....++++..++.++..... + ..+..|+..|.+.++.++..+..+|+.+-. +
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~---- 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R---- 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h----
Confidence 4678888888543337777766655532211 1 137899999999999999999999987621 1
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011316 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 232 (488)
.....|+..+ .+.++.++..++.++..... ...+.+..++++.++.++..++.+++.+...
T Consensus 117 -----~a~~~L~~~L-~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-- 177 (410)
T TIGR02270 117 -----QAEPWLEPLL-AASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR-- 177 (410)
T ss_pred -----HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence 2456778888 78888999888877766221 2356788889999999999999999987543
Q ss_pred hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011316 233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312 (488)
Q Consensus 233 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl 312 (488)
..++.|...+.+.++.||..|+..++.+-. + .....+....... ....+..+..++...
T Consensus 178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~ 236 (410)
T TIGR02270 178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA 236 (410)
T ss_pred ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence 345667777999999999999999977633 2 1234455544443 333444444444333
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 011316 313 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392 (488)
Q Consensus 313 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~ 392 (488)
+.+ ..++.|..+++++. ++..++++++.+-.. ..++.|+..++++. +...|-+
T Consensus 237 --~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~e 289 (410)
T TIGR02270 237 --GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGE 289 (410)
T ss_pred --Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHH
Confidence 222 36778888888754 899999999988542 25778888877443 8888999
Q ss_pred HHHHHHHh
Q 011316 393 GLENILKA 400 (488)
Q Consensus 393 ~L~~l~~~ 400 (488)
++..|.-.
T Consensus 290 A~~~ItG~ 297 (410)
T TIGR02270 290 AFSLITGM 297 (410)
T ss_pred HHHHhhCC
Confidence 99888654
No 98
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.46 E-value=0.00016 Score=68.60 Aligned_cols=251 Identities=27% Similarity=0.318 Sum_probs=176.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++.+++.+.+++..++..+++.+..+-.. ..++.+.+++.+.+ +.+|..|+.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~--- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD--P--- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence 4678899999999999999999997775432 37899999999999 8999999998887764 1
Q ss_pred HHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc---------cH--hHHH
Q 011316 110 RVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---------KL--SMLR 177 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---------~~--~v~~ 177 (488)
..++.++.++. +++..+|..+.++|+.+-.. ..+.+++..+.+.. .. .++.
T Consensus 105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 34788999888 59999999999999998422 13666777773222 01 3556
Q ss_pred HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcc
Q 011316 178 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 257 (488)
Q Consensus 178 ~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 257 (488)
.+...+..+-.. ..++.+...+.+.+..++..+..+|+.+.... ..+.+.+...+.+++..
T Consensus 168 ~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 168 AAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 666666655443 46677888888888888888888888877654 24457777888888888
Q ss_pred hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011316 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~ 337 (488)
++..++..++.+-.. .....+...+... +..++..+...+... ... .....+...+.
T Consensus 229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence 888888888776442 2345667777666 665555555444411 101 12344555556
Q ss_pred cCChhHHHHHHHHHHHhccC
Q 011316 338 NAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 338 ~~~~~v~~~a~~aL~~l~~~ 357 (488)
+....++..+..++......
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 286 DEANAVRLEAALALGQIGQE 305 (335)
T ss_pred cchhhHHHHHHHHHHhhccc
Confidence 66677777777777777553
No 99
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=3.6e-05 Score=74.43 Aligned_cols=227 Identities=16% Similarity=0.158 Sum_probs=153.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC------CC
Q 011316 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK------PQ 192 (488)
Q Consensus 119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~------~~ 192 (488)
..+..+..+.+..+|..|+..|..|..+.. ..+. .....++++ .+.+..|+..|+.+++-...-. ..
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 336677777888888888888887765322 2222 234566677 7778889988866665544332 22
Q ss_pred CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH-----------------------------------
Q 011316 193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA----------------------------------- 237 (488)
Q Consensus 193 ~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~----------------------------------- 237 (488)
........++..+...+++....|+..|..+|+.+-..+.+.+..
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 233344567778888888888888888888887665444333222
Q ss_pred ---------------HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHH
Q 011316 238 ---------------VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 302 (488)
Q Consensus 238 ---------------~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~ 302 (488)
++..|....++.-+.++-.+||.+|...++.|+...+.... ..+..|++++++. ...||
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE-~~~VR 427 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE-IEVVR 427 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH-HHHHH
Confidence 23333445555556666667999999999999998776544 4577899999998 88999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316 303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 365 (488)
Q Consensus 303 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 365 (488)
..|..+|..++.+ -.+....++.++..|.+.+.++|+..-..|++.- ..+.+....
T Consensus 428 L~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~~i~m 483 (823)
T KOG2259|consen 428 LKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNAR-VSDLECIDM 483 (823)
T ss_pred HHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 9999999988764 1122335777888888888888887777776653 344444444
No 100
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.41 E-value=1.6e-05 Score=70.12 Aligned_cols=235 Identities=14% Similarity=0.159 Sum_probs=158.1
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh-CCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHH
Q 011316 76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (488)
+.|-++++.-+ +-.+.-|++|+.++.. .++.|..... ...-..+...+++ +..+++.+.+.+++.++..+ .+.+
T Consensus 152 eyLgkl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aq 228 (432)
T COG5231 152 EYLGKLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQ 228 (432)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHH
Confidence 34445555555 6678889999999998 7888887764 3455667777776 67899999999999887553 3443
Q ss_pred HHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChh--hhhchHHHHHHhhc-c--CChhHHHHHHHHHHH
Q 011316 153 LVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIH-S--NDDEVLTDACWALSY 226 (488)
Q Consensus 153 ~~~~-~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~L~~ll~-~--~~~~v~~~al~~L~~ 226 (488)
.+-. -..+.-++.+......+.+.+-++..+.+++...+..... ...+-+...++.|. . .|++++...-..=..
T Consensus 229 di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~ 308 (432)
T COG5231 229 DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSR 308 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 2222 1346667777766667889999999999999854333222 22332333344443 2 244444333222221
Q ss_pred hccCC----------------------c--------hhHHHHHHh--CCHHHHHHhcCCCCcc-hHhHHHHHHhHhhcCC
Q 011316 227 LSDGT----------------------N--------DKIQAVIEA--GVCPRLVELLRHPSPS-VLIPALRTVGNIVTGD 273 (488)
Q Consensus 227 l~~~~----------------------~--------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~ 273 (488)
+..+. + .....+.+. .++..|.++++...+. ...-||.-++.+.+..
T Consensus 309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~ 388 (432)
T COG5231 309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS 388 (432)
T ss_pred HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC
Confidence 21110 0 011223322 4778888999887766 5667889999999999
Q ss_pred chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
|+....+.+.|+-+.++.+++++ +++||.+|..++..+..
T Consensus 389 PE~~~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 389 PEINAVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred chHHHHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 99999899999999999999999 99999999999877653
No 101
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.40 E-value=8.6e-05 Score=70.79 Aligned_cols=350 Identities=13% Similarity=0.110 Sum_probs=202.8
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC---hhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011316 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF---PQLQFEAAWALTNIASGTSENTRVVIDHGAV 118 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 118 (488)
.++--|+.|+-.|.++-.++ .+. .-.+++.+..+.+ ........++...+...+++.+.++ .
T Consensus 202 ~~~isqYHalGlLyq~kr~d------kma----~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----r 266 (898)
T COG5240 202 GNPISQYHALGLLYQSKRTD------KMA----QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----R 266 (898)
T ss_pred CChHHHHHHHHHHHHHhccc------HHH----HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----H
Confidence 44566777777777643221 122 2234444443321 2223344556666666677776665 4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011316 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198 (488)
Q Consensus 119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 198 (488)
|.|-..+++.-.-+.-.+++.++.++..+-. ....+ ..+..|-.+| .+.....+-.|..+|..++...|.......
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv~vcN 342 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKVSVCN 342 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence 7777788887788888888888888754411 12211 1344555555 677778899999999999988765544333
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011316 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
+-+-.++.+.+..+..+|+.+|..- +.++.+..++ ..++.++.=+.++ .+.-++.++..|+-..+....
T Consensus 343 ----~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv--~~I~sfvhD~SD~---FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 343 ----KEVESLISDENRTISTYAITTLLKT--GTEETIDRLV--NLIPSFVHDMSDG---FKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred ----hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHH--HHHHHHHHhhccC---ceEEeHHHHHHHHhhCcHHHH
Confidence 3345566777777777776666543 2333334333 2234444333333 344444444444443443332
Q ss_pred HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316 279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
..+..|...|......+.++.+..++.......|+.... ++..|+..+.+-. .-+-+...|+-+...+
T Consensus 412 -----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDce--y~~I~vrIL~iLG~Eg 479 (898)
T COG5240 412 -----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCE--YHQITVRILGILGREG 479 (898)
T ss_pred -----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcc--hhHHHHHHHHHhcccC
Confidence 234556665544437788899999999888865554433 4556777777652 2244555555554433
Q ss_pred CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCH
Q 011316 359 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 438 (488)
Q Consensus 359 ~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~ 438 (488)
...-.+ ...+..+.+-+--.+..+|..|+.+|.++.-.....- ..+. ....+...+++.++
T Consensus 480 P~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~----------~~~s-----v~~~lkRclnD~Dd 540 (898)
T COG5240 480 PRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVV----------SPQS-----VENALKRCLNDQDD 540 (898)
T ss_pred CCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccc----------cHHH-----HHHHHHHHhhcccH
Confidence 111000 0134455554445677889999999988743222111 0111 23457777899999
Q ss_pred HHHHHHHHHHHHhc
Q 011316 439 EIYEKAVKILETYW 452 (488)
Q Consensus 439 ~v~~~a~~~l~~~~ 452 (488)
+|+++|...++.+-
T Consensus 541 eVRdrAsf~l~~~~ 554 (898)
T COG5240 541 EVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998765
No 102
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.36 E-value=2.6e-05 Score=80.36 Aligned_cols=268 Identities=15% Similarity=0.144 Sum_probs=177.6
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC---Cch
Q 011316 32 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG---TSE 107 (488)
Q Consensus 32 i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~---~~~ 107 (488)
++.+..++++ ...+.+..|+..|..+...-. ++..-..++|.++.++.++. .++|..|+.+|+.+... -+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence 4556666665 456778889888888765432 22233468999999999999 99999999998887652 233
Q ss_pred hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhC------------------CCchh-----------HHHHHhc
Q 011316 108 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAG------------------DSPKC-----------RDLVLSN 157 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~------------------~~~~~-----------~~~~~~~ 157 (488)
.-..+...-++|.|-.++.+ ....+|..-+..|+.|+. +.++. ...+.
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-- 576 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-- 576 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH--
Confidence 33334445678888888877 445556555666665542 11111 00010
Q ss_pred CChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH
Q 011316 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 237 (488)
Q Consensus 158 ~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 237 (488)
..++..+.-|..++++-|++..+..|.-||.... +.....-+++.|+.+|.+.|+.+|..-...|.-++-.-..+
T Consensus 577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--- 651 (1431)
T KOG1240|consen 577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--- 651 (1431)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---
Confidence 1133333222255566777777777777765421 11112346788999999999999988888777666432211
Q ss_pred HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
-++..++|.|.+.|.+.++.|...|++++..|+...--....+. .+++.+..+|-++ +.-+|+.++..|...+.
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence 13447789999999999999999999999999874332222222 3667788888999 99999999999988776
No 103
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=5.3e-05 Score=79.94 Aligned_cols=338 Identities=13% Similarity=0.129 Sum_probs=200.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHH
Q 011316 33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRV 111 (488)
Q Consensus 33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~ 111 (488)
..+...+.|++|..|..++.-|..+...-....-.......+...+.++|.+.+ +-+|..|.+.++-+-+ ++...++.
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~ 899 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKS 899 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHH
Confidence 345556678999888876554444444322122222223345688889999888 7888888888776554 33344443
Q ss_pred HHhCCCHHHHHHhhCC---------CCHHHH-------------HHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc
Q 011316 112 VIDHGAVPIFVRLLSS---------PTDDVR-------------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE 169 (488)
Q Consensus 112 ~~~~g~i~~L~~lL~~---------~~~~~~-------------~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 169 (488)
+ +..|+.-|.. ++.++- -....-|++|+.+-. +...+-..+++.+.
T Consensus 900 L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh 967 (1702)
T KOG0915|consen 900 L-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANH 967 (1702)
T ss_pred H-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhh
Confidence 3 4445444322 111111 111223444443211 00122334444433
Q ss_pred cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011316 170 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 249 (488)
Q Consensus 170 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 249 (488)
+-.-.-+.-|+.-+..++..............+|.|.++=.+++..|+..-..+-..+............+ .+++-|+.
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence 33334455666677777766544444556778888888888899999887777777777765555554444 77888888
Q ss_pred hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHH---HHHHHHhcC-----CHHHHH
Q 011316 250 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC---WTISNITAG-----NVNQIQ 321 (488)
Q Consensus 250 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~---~~L~nl~~~-----~~~~~~ 321 (488)
-+.+..+.+|+++|-+|..+..+.+.....-.-..+...+.+.+++- .+.||..|- .+++.++.. +...-+
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence 89999999999999999999997653211100113455556666665 667777654 445544431 111122
Q ss_pred HHHHcCChHHHHH--HHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 011316 322 AIIEAGIIGPLVN--LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 389 (488)
Q Consensus 322 ~l~~~~~l~~L~~--ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~ 389 (488)
..++ .++|.|+. ++ +.-.++|..++.++..++..........+. .+++.|++....-++.+...
T Consensus 1126 ~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1126 EALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred HHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHH
Confidence 2222 25555543 22 446789999999999999877655555543 37888888887666655433
No 104
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.35 E-value=0.0014 Score=63.88 Aligned_cols=350 Identities=15% Similarity=0.142 Sum_probs=201.7
Q ss_pred HHHHHHHhcCCCH---HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 32 LPAMVAGVWSDDR---NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 32 i~~l~~~L~s~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+|.++..|.+.++ ......+.+|..+... .+....+.. ..+..+...++.+.+.+....++.++..+.....+.
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 3677888876544 5566788888886653 233333322 455555555554444667777788888776633222
Q ss_pred h-----HHHHhCCCHHHHHHhhCC-----C--CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--------
Q 011316 109 T-----RVVIDHGAVPIFVRLLSS-----P--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-------- 168 (488)
Q Consensus 109 ~-----~~~~~~g~i~~L~~lL~~-----~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-------- 168 (488)
. ....+..+++.+.+.... . ++.+...+..++..+.+.-+.-+..- .+..+..+..
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPF 153 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCC
Confidence 2 333344477777775532 2 25666666666666665443322211 1333333331
Q ss_pred -cccc--HhHHHHHHHHHHH-hhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCC--chhHHHHHHh
Q 011316 169 -EHAK--LSMLRNATWTLSN-FCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGT--NDKIQAVIEA 241 (488)
Q Consensus 169 -~~~~--~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~--~~~~~~~~~~ 241 (488)
...+ ..........+.. ++.-++..........+..++.+..+ .++..+..++.+++.++..- ++...
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~----- 228 (415)
T PF12460_consen 154 QPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD----- 228 (415)
T ss_pred CccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----
Confidence 0011 0112222222222 22222222322444577777777654 46888899999998888552 22222
Q ss_pred CCHHHHHHhc-CCCCcchHhHHHHHH----hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011316 242 GVCPRLVELL-RHPSPSVLIPALRTV----GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 316 (488)
Q Consensus 242 ~~l~~L~~lL-~~~~~~v~~~a~~~L----~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 316 (488)
+++..+.... ....+..+..++.++ ..+...+..... ..++.++.++.+ +.+...++..+.-+....
T Consensus 229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~ 300 (415)
T PF12460_consen 229 EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLSDS 300 (415)
T ss_pred HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCc
Confidence 3333343333 233344444444444 444433333322 346678888876 467788888888777652
Q ss_pred HH--------HHHHHHHc----CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCH
Q 011316 317 VN--------QIQAIIEA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384 (488)
Q Consensus 317 ~~--------~~~~l~~~----~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~ 384 (488)
++ ..+.+.+. .++|.|++-....+...|...+.||.++..+-+......=. ..+++.|.+.|+.++.
T Consensus 301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l-~~LlPLLlqsL~~~~~ 379 (415)
T PF12460_consen 301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL-PTLLPLLLQSLSLPDA 379 (415)
T ss_pred HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHhCCCCH
Confidence 22 22223322 36788888888777779999999999999876544333222 2589999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011316 385 RIVTVCLEGLENILKAGE 402 (488)
Q Consensus 385 ~v~~~al~~L~~l~~~~~ 402 (488)
+++..++.+|..++...+
T Consensus 380 ~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 380 DVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHHcCH
Confidence 999999999999987654
No 105
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.34 E-value=4.7e-05 Score=78.54 Aligned_cols=297 Identities=15% Similarity=0.096 Sum_probs=191.3
Q ss_pred CHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC----C
Q 011316 117 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----P 191 (488)
Q Consensus 117 ~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~----~ 191 (488)
+++.+...+++ ...+.+..|+..|..++..... ...-..+++.++.++ .++...||..|+.+|..+...- +
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 34556666665 5678888999999998865432 111224788888888 8888999999999998776533 3
Q ss_pred CCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011316 192 QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270 (488)
Q Consensus 192 ~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 270 (488)
........-++|.|..++.+ ....++..-+.+|..++... ..+.+...-.....+++.++.+.. --
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA----~rFle~~q~~~~~g~~n~~nset~---------~~ 565 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA----YRFLELTQELRQAGMLNDPNSETA---------PE 565 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH----HHHHHHHHHHHhcccccCcccccc---------cc
Confidence 44555667888999988887 55667777777777776432 112222111122223444333300 00
Q ss_pred cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 011316 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 350 (488)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~a 350 (488)
.......+.+. ..+-+.+..++.++ ++-||+..+..|+-|+.-.... --+.-+++.|+..|++.|+.+|..-...
T Consensus 566 ~~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 566 QNYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred cccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCccHHHHHHHHhh
Confidence 11112222222 24556677788877 7889988888888777510000 0012368999999999999999776666
Q ss_pred HHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHH
Q 011316 351 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE 430 (488)
Q Consensus 351 L~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~ 430 (488)
+.-++..-... -.+...++.|.+-|.++++.|+..|+++|..+++.+--.+. .-...++...
T Consensus 641 I~gvsi~VG~r----s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~--------------~v~~i~~~v~ 702 (1431)
T KOG1240|consen 641 IVGVSIFVGWR----SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP--------------AVKDILQDVL 702 (1431)
T ss_pred ccceEEEEeee----eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH--------------HHHHHHHhhh
Confidence 66554322211 12335789999999999999999999999999987653321 1112245566
Q ss_pred HhhcCCCHHHHHHHHHHHHHhcC
Q 011316 431 NLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 431 ~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
-++-++|.=|+..+..+|-...+
T Consensus 703 PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 703 PLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred hheeCchHHHHHHHHHHHHHHHh
Confidence 77889999999999888865444
No 106
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=0.00035 Score=74.06 Aligned_cols=316 Identities=17% Similarity=0.146 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011316 44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 123 (488)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 123 (488)
-.-+.-|+.-+..+++... +..+.. -...||.|.+.=-+++ +.+|.....+...+..+.....+...+ .++.-|+.
T Consensus 971 wnSk~GaAfGf~~i~~~a~-~kl~p~-l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen 971 WNSKKGAAFGFGAIAKQAG-EKLEPY-LKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred hhcccchhhchHHHHHHHH-HhhhhH-HHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence 3445556777777666542 111111 2247888888877888 899988888888888755555555443 56788888
Q ss_pred hhCCCCHHHHHHHHHHHhhhhCCCchh--HHHHHhcCChHHHHHHhcccccHhHHHHH---HHHHHHhhcCC-----CCC
Q 011316 124 LLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNA---TWTLSNFCRGK-----PQP 193 (488)
Q Consensus 124 lL~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~v~~~a---~~~L~~l~~~~-----~~~ 193 (488)
-+.+....+|+.++.+|..|.++.|.- .+.+. .....+++.+ ++-.+.+|..+ +.+|+.+|-.. ...
T Consensus 1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 888889999999999999999876532 12222 2344445555 55556666654 45555555332 122
Q ss_pred ChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHh-HHHHH------
Q 011316 194 LFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI-PALRT------ 265 (488)
Q Consensus 194 ~~~~~~~~~~~L~~-ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~-~a~~~------ 265 (488)
.......++|.++. -+-+.-.+++..++.++..++...+....... ..+++.|+.....-++.+.. .++++
T Consensus 1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e 1202 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETE 1202 (1702)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHH
Confidence 22233444554442 11255689999999999999987765444222 25667777766654443322 22222
Q ss_pred ----HhH-hhcCCch--hhHHHh-------hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011316 266 ----VGN-IVTGDDM--QTQCII-------NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 331 (488)
Q Consensus 266 ----L~~-l~~~~~~--~~~~~~-------~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 331 (488)
+.. .+.+++. .....+ =...+|.+.++++.+-.-..|..++..++-++..-........ -..+..
T Consensus 1203 alDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~a 1281 (1702)
T KOG0915|consen 1203 ALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRA 1281 (1702)
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHH
Confidence 111 1111110 000000 0134556666665554455566666666666542111111111 124666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316 332 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS 368 (488)
Q Consensus 332 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 368 (488)
++..+.+.++.+++..+.|.+.++....+++.+.+++
T Consensus 1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie 1318 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE 1318 (1702)
T ss_pred HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 7777777899999999999999999888888777654
No 107
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.28 E-value=0.0002 Score=67.87 Aligned_cols=248 Identities=24% Similarity=0.305 Sum_probs=169.6
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (488)
..++.+.+++.+++ ..+|..+.+.++.+.. ...++.+..++.+.++.+|..+..+|+.+- .+.
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~--- 105 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE--- 105 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence 46888999999997 8999999999766654 235899999999999999999999888873 222
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCCh------------hHHHHH
Q 011316 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDA 220 (488)
Q Consensus 153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~------------~v~~~a 220 (488)
.++.++..+..+.+..++..+.++|..+-... .+..++..+.+... .++..+
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 57888898855788999999999999876543 36667777766542 234444
Q ss_pred HHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011316 221 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 300 (488)
Q Consensus 221 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~ 300 (488)
...+..+.. ...++.+...+.+....++..+...|+.+...+ ..+...+...+.++ +..
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 444443321 134566777777777788888888888877644 23456677777777 888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011316 301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~ 380 (488)
+|..++.+++.+-.. ...+.+...+.+.+..++..+..++... ... .....+...+.
T Consensus 229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGAL---DLA---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhccc---Cch---------hhHHHHHHHhh
Confidence 888888888776432 1456667777777776666665555511 100 12334444555
Q ss_pred CCCHHHHHHHHHHHHHH
Q 011316 381 CPDPRIVTVCLEGLENI 397 (488)
Q Consensus 381 ~~~~~v~~~al~~L~~l 397 (488)
+....++..+..++..+
T Consensus 286 ~~~~~~~~~~~~~l~~~ 302 (335)
T COG1413 286 DEANAVRLEAALALGQI 302 (335)
T ss_pred cchhhHHHHHHHHHHhh
Confidence 55556665555555544
No 108
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=0.00073 Score=68.97 Aligned_cols=352 Identities=16% Similarity=0.135 Sum_probs=215.8
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316 70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 149 (488)
++....+..-++.++.. +.++..++.-+++++..-+. .....++++.+..+..++...+|..|...+.++...-..
T Consensus 234 vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~ 309 (759)
T KOG0211|consen 234 VKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDD 309 (759)
T ss_pred HHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCC
Confidence 33344555556666666 89999999999988873333 566778899999999998999999999888887632211
Q ss_pred hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-C-------------------------------------
Q 011316 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P------------------------------------- 191 (488)
Q Consensus 150 ~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~------------------------------------- 191 (488)
-. -......+.+++.. .+.+..++.........+...- +
T Consensus 310 ~~--d~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l 386 (759)
T KOG0211|consen 310 DD--DVVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYL 386 (759)
T ss_pred ch--hhhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhc
Confidence 00 11122344555555 4444444433333333222111 0
Q ss_pred -CC--ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 192 -QP--LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 192 -~~--~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
.. .......++|.+..++.+.+..++...+..+..+....+. ..-+ ....+.+...+++..+.++....+.+..
T Consensus 387 ~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 387 NASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSL 463 (759)
T ss_pred CcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHH
Confidence 00 0001123334444445555555555555555544432220 0001 1345666667777888888888877766
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
+-..++...........++.+..+-... .++++.+..+.+-.++.... ..++....-+.+...+.+....+++.|+
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa 539 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAA 539 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHH
Confidence 6555554444445556777787777777 88999999998888876422 2233333445555566666788999999
Q ss_pred HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011316 349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 428 (488)
Q Consensus 349 ~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 428 (488)
..+..++..-+.+.. ....++.+.....+++...|...+.++..+....... +-....+..
T Consensus 540 ~~l~~l~~~~G~~w~----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e---------------i~~~~Llp~ 600 (759)
T KOG0211|consen 540 RNLPALVETFGSEWA----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE---------------ITCEDLLPV 600 (759)
T ss_pred HHhHHHHHHhCcchh----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH---------------HHHHHHhHH
Confidence 999888764332211 1134666666666667888888888888776654432 222334678
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316 429 IENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 429 l~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
+..+.+++.++|+-.+.+.+.++...
T Consensus 601 ~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 601 FLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred HHHhccCCchhhhhhHHHHHHHHHhh
Confidence 88899999999999999888876654
No 109
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.21 E-value=1e-05 Score=61.93 Aligned_cols=134 Identities=13% Similarity=0.112 Sum_probs=111.5
Q ss_pred CChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH
Q 011316 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 237 (488)
Q Consensus 158 ~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 237 (488)
+.+..|+.-.....+.+.++....-|.|++.++.+........++...+..+..+|..+.+.++..|+|+|.... ..+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHHH
Confidence 346677777767789999999999999999988777777778899999999999999999999999999998764 4477
Q ss_pred HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 292 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 292 (488)
+.+.++++.++..+.++...+...++..+..++.+....+..+....++..+...
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~ 149 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRW 149 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHH
Confidence 9999999999999999988899999999999998777777666654444444443
No 110
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.21 E-value=0.00017 Score=63.92 Aligned_cols=237 Identities=17% Similarity=0.158 Sum_probs=149.0
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011316 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCII 281 (488)
Q Consensus 204 ~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 281 (488)
.+-++++.-++-.+.-|.+++.++......+.....+..+-..++.++++ ...+++..++.+++.++. ++...+.+-
T Consensus 153 yLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~ 231 (432)
T COG5231 153 YLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDID 231 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHH
Confidence 33344455566678888899999887665554444444556677888876 356789999999999987 444442221
Q ss_pred h-CCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHH-HcCChHHHHHHHhcC--ChhHHHHHHHHHHHhcc
Q 011316 282 N-HQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAII-EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATS 356 (488)
Q Consensus 282 ~-~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~-~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 356 (488)
+ ...+..++.+.+......|-+-++.++.|++.. ..+.+..+. ..++.+....+...+ |.+++...-..=..+..
T Consensus 232 K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~ 311 (432)
T COG5231 232 KMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQ 311 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHh
Confidence 1 245666777776665677888899999999883 334444443 444555554444443 55554333222222211
Q ss_pred CC---------------------C--------HHHHHHHHHC--CChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhh
Q 011316 357 GG---------------------S--------NEQIKFLVSQ--GCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 357 ~~---------------------~--------~~~~~~l~~~--~~~~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~ 404 (488)
+. + ......+.+. ..+..|..+++..++. ....|+.-+..++...+.
T Consensus 312 ~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE- 390 (432)
T COG5231 312 NTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE- 390 (432)
T ss_pred hhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch-
Confidence 10 0 0112222221 2356666667665555 445566666777766554
Q ss_pred hccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 405 KNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
....+..-|+-+.+.+|++|++++|+-.|...+..+..
T Consensus 391 -----------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 391 -----------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred -----------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 37888999999999999999999999999998877654
No 111
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.0014 Score=66.36 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=101.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
.|.+++.+.+.|.+++...-..|...+...+ +..+ =.++.+.+=+++++ +.+|..|++.++.+=. ++...
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P----~~~l--LavNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~- 126 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP----ELAL--LAVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG- 126 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH----HHHH--HHHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-
Confidence 3445555555556665555555555555431 1111 14677778888999 9999999999987754 33322
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 112 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+++.+.+++.++++.+|+.|+-++..+-+-++ +.+.+.|.+..+..++ .++|+.+..+|+.+|..+...
T Consensus 127 ----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 ----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 347899999999999999999999999986654 3566666777777777 899999999999999988765
No 112
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=0.00011 Score=72.07 Aligned_cols=135 Identities=20% Similarity=0.246 Sum_probs=95.6
Q ss_pred chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh-cCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011316 200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 200 ~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
.+=+.+-+++.+.|+-+|...+.++.---....+ .+++..|+.. .++.+.+||+.|.-+|+-++...++.
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-- 589 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-- 589 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--
Confidence 4455667778888888887766655432111111 1556677776 56788999999999999999876643
Q ss_pred HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC--CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.+..+.+|....++.||..++.+|+-.|.+ +.+ .+..|-.+..++..-||+-|+-+++-+..
T Consensus 590 -------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e---------Ai~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 590 -------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE---------AINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred -------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH---------HHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 467788888777999999999999988874 222 33444445556667789999999888876
Q ss_pred CCC
Q 011316 357 GGS 359 (488)
Q Consensus 357 ~~~ 359 (488)
..+
T Consensus 654 Q~t 656 (929)
T KOG2062|consen 654 QQT 656 (929)
T ss_pred hcc
Confidence 543
No 113
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0023 Score=66.66 Aligned_cols=237 Identities=14% Similarity=0.066 Sum_probs=147.3
Q ss_pred HHHHHhcccccHhHHHHHHHHHHHhhcCCCCC--ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHH
Q 011316 162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP--LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 239 (488)
Q Consensus 162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 239 (488)
.+.....++.+..+|..+...|..++..++.. .......+...+.+-+++.....+...+.+|..+....+.....++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34444445668899999999999999884222 2223345556666666777788889999999888866552222233
Q ss_pred HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc-------CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011316 240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312 (488)
Q Consensus 240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl 312 (488)
...+.+.++. ++..+...++.+..+|..++. +++. ....++ .++..+..-+-.. ...++...+.++..+
T Consensus 737 ~k~I~EvIL~-~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~i 812 (1176)
T KOG1248|consen 737 PKLIPEVILS-LKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHI 812 (1176)
T ss_pred HHHHHHHHHh-cccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence 3233344444 477788889999888888873 1111 011111 2233333333233 333333334555555
Q ss_pred hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 011316 313 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392 (488)
Q Consensus 313 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~ 392 (488)
..........-.-.+++..+..++.++.++++..|+..+..++..-+........+ .+++.+..+.++...+++..+-.
T Consensus 813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~-~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE-ELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH-HHHHHHHHHHHhhhHHHHHHHHH
Confidence 44322222222223467777888889999999999999999998766555444332 46778888888778889988888
Q ss_pred HHHHHHHhhhh
Q 011316 393 GLENILKAGEA 403 (488)
Q Consensus 393 ~L~~l~~~~~~ 403 (488)
.|..++.....
T Consensus 892 LlekLirkfg~ 902 (1176)
T KOG1248|consen 892 LLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHhCH
Confidence 88888766443
No 114
>PF05536 Neurochondrin: Neurochondrin
Probab=98.14 E-value=0.00016 Score=72.10 Aligned_cols=235 Identities=16% Similarity=0.149 Sum_probs=164.6
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh---hHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHhhh
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN---TRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNV 143 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~lL~~-------~~~~~~~~a~~~L~~l 143 (488)
.++.-+++|+..+ ++-|..++..+.+++..++.. ++.+.+.=+.+.+-++|++ +....+..++.+|..+
T Consensus 6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566778899888 788999999999999855532 3456676667888899987 4577888999999999
Q ss_pred hCCCchhH--HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHH
Q 011316 144 AGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC 221 (488)
Q Consensus 144 ~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al 221 (488)
|.+. +.. ..+. +-+|.+++.+..+++..+...+..+|..++..+.........+.++.+.+.+.+ .+...+.++
T Consensus 85 ~~~~-~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 85 CRDP-ELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred cCCh-hhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 9843 332 2222 368999999955555689999999999999777777778888999999999987 566788888
Q ss_pred HHHHHhccCCchhH-H---HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-hHHHh----hCCChHHHHHH
Q 011316 222 WALSYLSDGTNDKI-Q---AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCII----NHQALPCLLDL 292 (488)
Q Consensus 222 ~~L~~l~~~~~~~~-~---~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~----~~~~~~~L~~l 292 (488)
.++.+++....... . ..+ ..+++.+...+.......+...+..|+.+....+.. ..... -..+...+..+
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 88888775443110 0 001 134455555555555667788899998888765321 11111 22345566677
Q ss_pred hcccchhhHHHHHHHHHHHHhc
Q 011316 293 LTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 293 L~~~~~~~v~~~a~~~L~nl~~ 314 (488)
+++...+.-|..+....+.+..
T Consensus 240 L~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 240 LQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 7776566667777666666654
No 115
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.00024 Score=67.89 Aligned_cols=288 Identities=15% Similarity=0.081 Sum_probs=156.2
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011316 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
.|.|-..|++.- +.+...+++.++.++..+ ....+++ ..+..|-.+|.+.....|-.|+++|..++...|.. +
T Consensus 266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k---v 338 (898)
T COG5240 266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK---V 338 (898)
T ss_pred HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce---e
Confidence 455555666666 789999999999988733 1122222 24678888899999999999999999999877642 1
Q ss_pred HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh
Q 011316 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 234 (488)
Q Consensus 155 ~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 234 (488)
.. +-+.+-.++ .+.+..+-.. ++..|............-..++..+.=+.++-..+...+++.|+..... .
T Consensus 339 ~v--cN~evEsLI-sd~Nr~Isty---AITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~---k 409 (898)
T COG5240 339 SV--CNKEVESLI-SDENRTISTY---AITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS---K 409 (898)
T ss_pred ee--cChhHHHHh-hcccccchHH---HHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH---H
Confidence 11 111222233 4444444444 4444444332222222223333333333333344455555555544322 2
Q ss_pred HHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316 235 IQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 235 ~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
.. ..+..|...|. .+.-+.+..+..++..+....|+-.+. .++.|...+.+.+ .-+.+..+|+-+.
T Consensus 410 ~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDce---y~~I~vrIL~iLG 476 (898)
T COG5240 410 KL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCE---YHQITVRILGILG 476 (898)
T ss_pred HH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcc---hhHHHHHHHHHhc
Confidence 22 22333444332 344566777777777777655544432 3445666665542 2334455555554
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHH
Q 011316 314 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 393 (488)
Q Consensus 314 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~ 393 (488)
...|..... ...+..+..-+--.+.-+|..|..||..++.+.+...... .+...|-+++++.|.++|..|..+
T Consensus 477 ~EgP~a~~P---~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~----sv~~~lkRclnD~DdeVRdrAsf~ 549 (898)
T COG5240 477 REGPRAKTP---GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQ----SVENALKRCLNDQDDEVRDRASFL 549 (898)
T ss_pred ccCCCCCCc---chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHH----HHHHHHHHHhhcccHHHHHHHHHH
Confidence 421110000 0012222222222355688888888888877654322222 345667778888888888888888
Q ss_pred HHHHH
Q 011316 394 LENIL 398 (488)
Q Consensus 394 L~~l~ 398 (488)
+.++=
T Consensus 550 l~~~~ 554 (898)
T COG5240 550 LRNMR 554 (898)
T ss_pred HHhhh
Confidence 87774
No 116
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.11 E-value=0.00078 Score=65.79 Aligned_cols=255 Identities=16% Similarity=0.140 Sum_probs=166.1
Q ss_pred CccHHHHHHcCCHHHHHHhh---------cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC-----
Q 011316 63 SPPINEVIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP----- 128 (488)
Q Consensus 63 ~~~~~~~~~~~~i~~L~~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~----- 128 (488)
......+....++..|.++- ....++.+...|++||+|+...++..|..+.+.|..+.++..++..
T Consensus 12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~ 91 (446)
T PF10165_consen 12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ 91 (446)
T ss_pred cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence 34455555555666666654 2333389999999999999999999999999999999999999875
Q ss_pred CHHHHHHHHHHHhhhhCCCchhHHHHHhc-CChHHHHHHhccc----------------ccHhHHHHHHHHHHHhhcCCC
Q 011316 129 TDDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNEH----------------AKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 129 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~----------------~~~~v~~~a~~~L~~l~~~~~ 191 (488)
+.++.-...++|.-++...+..+..+.+. +++..+...+..+ .+......++..+.|+....+
T Consensus 92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~ 171 (446)
T PF10165_consen 92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP 171 (446)
T ss_pred ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence 78888889998888887776666665554 6666666655210 134456778888888887764
Q ss_pred CCChhhh----hchHHHHHHhh---cc--CChhHHHHHHHHHHHhccCCchh-----------HHHHHHhCCHHHHHHhc
Q 011316 192 QPLFEQT----RPALPALERLI---HS--NDDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELL 251 (488)
Q Consensus 192 ~~~~~~~----~~~~~~L~~ll---~~--~~~~v~~~al~~L~~l~~~~~~~-----------~~~~~~~~~l~~L~~lL 251 (488)
....... ..++..+..++ .. +.......++.+|.|+--..... .........+..|+.+|
T Consensus 172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L 251 (446)
T PF10165_consen 172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL 251 (446)
T ss_pred cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence 4333222 33444444442 11 23566788888888773211110 00011123455566665
Q ss_pred CC-----C---CcchHhHHHHHHhHhhcCCchhhHHHh----------------hCCChHHHHHHhcccchhhHHHHHHH
Q 011316 252 RH-----P---SPSVLIPALRTVGNIVTGDDMQTQCII----------------NHQALPCLLDLLTQNYKKSIKKEACW 307 (488)
Q Consensus 252 ~~-----~---~~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~~~~L~~lL~~~~~~~v~~~a~~ 307 (488)
+. . -.+.....+.+|..++......++.+. ...+-..|++++.++ .+.+|..+..
T Consensus 252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae 330 (446)
T PF10165_consen 252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE 330 (446)
T ss_pred HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence 32 1 124566678888888876544443332 235678899999999 5999999999
Q ss_pred HHHHHhcCCHH
Q 011316 308 TISNITAGNVN 318 (488)
Q Consensus 308 ~L~nl~~~~~~ 318 (488)
.+-.++..+..
T Consensus 331 llf~Lc~~d~~ 341 (446)
T PF10165_consen 331 LLFVLCKEDAS 341 (446)
T ss_pred HHHHHHhhhHH
Confidence 88888765444
No 117
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.11 E-value=6.3e-06 Score=50.69 Aligned_cols=41 Identities=44% Similarity=0.890 Sum_probs=38.2
Q ss_pred CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhC
Q 011316 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~ 145 (488)
+++++..+++.|+++.|+++|+++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 118
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.07 E-value=7.6e-05 Score=66.48 Aligned_cols=186 Identities=17% Similarity=0.230 Sum_probs=117.9
Q ss_pred CCCCcchHhHHHHHHhHhhcCC--chhhHHHhh--CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011316 252 RHPSPSVLIPALRTVGNIVTGD--DMQTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327 (488)
Q Consensus 252 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~--~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 327 (488)
.+.+++.|..++.-|..++.++ ......+.+ ..++..+...+.+. ...+...|+.++..++...........+ .
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence 5578899999999999998876 222222221 14556777777777 7889999999999998742333444444 3
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 407 (488)
++|.|+..+.++...++..|..+|..++...+ ....+ ..+.+....++.++.++..++..+..++.........
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 78999999999888999999999999998764 11111 1566777889999999999999999998765511110
Q ss_pred CCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 408 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+.....-....+.+..+..+.+++|++.|..++..|+.
T Consensus 169 --------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 169 --------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred --------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 01100012346778889999999999999999887765
No 119
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.07 E-value=8.1e-06 Score=50.18 Aligned_cols=41 Identities=46% Similarity=0.690 Sum_probs=38.0
Q ss_pred CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 316 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 316 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
++++++.+++.|++|.|++++.++++++++.|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 120
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0074 Score=61.86 Aligned_cols=341 Identities=14% Similarity=0.141 Sum_probs=196.5
Q ss_pred HHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc------CC-CChhHHHHHHHHHHHhcCC--CchhhHHHHhCCCHH
Q 011316 49 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS------RD-DFPQLQFEAAWALTNIASG--TSENTRVVIDHGAVP 119 (488)
Q Consensus 49 ~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~------~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~ 119 (488)
.|...+..+.++.+.+.. .+.++.+++.|. .+ ++++-+..|++.++++++. .+..-+-.++.=+++
T Consensus 391 Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~ 465 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN 465 (1010)
T ss_pred HHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 355666666655433333 256667777776 22 2367788899999988851 111112223333466
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC---Chh
Q 011316 120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP---LFE 196 (488)
Q Consensus 120 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~ 196 (488)
.+...++++.--+|..|+|+++.++.-.- ++...-..++....+.+..+.+-.|+..|+.+|..+..+.+.. ...
T Consensus 466 hVfP~f~s~~g~Lrarac~vl~~~~~~df--~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 466 HVFPEFQSPYGYLRARACWVLSQFSSIDF--KDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HhhHhhcCchhHHHHHHHHHHHHHHhccC--CChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 66777888889999999999999984321 1222222356667777756788899999999999998887322 333
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHH-HHhccCCchhHHHHHHhCCHHHHHHhcCC---C---CcchHhHHHHHHhHh
Q 011316 197 QTRPALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRH---P---SPSVLIPALRTVGNI 269 (488)
Q Consensus 197 ~~~~~~~~L~~ll~~~~~~v~~~al~~L-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~---~~~v~~~a~~~L~~l 269 (488)
...+.++.++.+.+.-+.+....++..+ +..+..-......+.. .+...+.+++.. . +.+-...|.++|..+
T Consensus 544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti 622 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTI 622 (1010)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHH
Confidence 4566666677776655544444444433 2233222222222222 445556666653 1 223334455555444
Q ss_pred hc---C--CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316 270 VT---G--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 270 ~~---~--~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
.. . +....-.-++..+++.+-.+|++. -.++-.+++..+.++....++.--.+. |+++.+.+.+.....+--
T Consensus 623 ~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf 699 (1010)
T KOG1991|consen 623 STILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYF 699 (1010)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHH
Confidence 32 1 111122223455677777788777 677778888887777764333222233 367788888888777778
Q ss_pred HHHHHHHHHhccCCCHHHHHHH-HHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHh
Q 011316 345 KEAAWAISNATSGGSNEQIKFL-VSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKA 400 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~l-~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~ 400 (488)
....-+|.|....+.+.....- .-+-.......++.+.+ ..=.+.|++.+..++-.
T Consensus 700 ~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~ 758 (1010)
T KOG1991|consen 700 TDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILN 758 (1010)
T ss_pred HHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 8889999998877654221110 01112334444454422 23345567777666543
No 121
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00042 Score=64.86 Aligned_cols=357 Identities=15% Similarity=0.128 Sum_probs=180.1
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC---chhhHHHH----
Q 011316 41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---SENTRVVI---- 113 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~---- 113 (488)
...+.+..+.+++|.++.+..+.+....-.-..++..+..++++.+ +.++..++..+..+...+ |+....+-
T Consensus 118 e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d-~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s 196 (728)
T KOG4535|consen 118 ESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD-VNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCS 196 (728)
T ss_pred hcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCc
Confidence 4557788899999999998765444443334456667777888888 899999999988887522 23222220
Q ss_pred -------------------hCC------------------CHHH-----------------HHHhhCC--CCHHHHHHHH
Q 011316 114 -------------------DHG------------------AVPI-----------------FVRLLSS--PTDDVREQAV 137 (488)
Q Consensus 114 -------------------~~g------------------~i~~-----------------L~~lL~~--~~~~~~~~a~ 137 (488)
... ++.. ..+.+.+ ....+|-.|+
T Consensus 197 ~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~ 276 (728)
T KOG4535|consen 197 SSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEAL 276 (728)
T ss_pred cccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHH
Confidence 000 0000 0000000 1123333344
Q ss_pred HHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-----CCCChhhh-hchHHHHH-----
Q 011316 138 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-----PQPLFEQT-RPALPALE----- 206 (488)
Q Consensus 138 ~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~-~~~~~~L~----- 206 (488)
.+|..++.+-.-.+...++ +...+..-..+.++.++..+..++..+..+- |....... .+.+-.+.
T Consensus 277 qvl~~~a~~~~~~~~~~~~---l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~ 353 (728)
T KOG4535|consen 277 QVLTLLARYFSMTQAYLME---LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPL 353 (728)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCC
Confidence 4444443222111111111 1111111114567788888888877765432 22222211 11111111
Q ss_pred -H-hhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC
Q 011316 207 -R-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 284 (488)
Q Consensus 207 -~-ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 284 (488)
. .-.+..+......+.++.++..........-.+.-.+..+..+-++++.-++..|++.++-+.-+........+-.+
T Consensus 354 ~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~ 433 (728)
T KOG4535|consen 354 PRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVAD 433 (728)
T ss_pred hhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHH
Confidence 0 11223456677778888877743221111000000111111111333444677788888777765544444444445
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHHhcC------CHHHHHHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhc
Q 011316 285 ALPCLLDLLTQNYKKSIKKEACWTISNITAG------NVNQIQAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNAT 355 (488)
Q Consensus 285 ~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~------~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~aL~~l~ 355 (488)
....+...+.+. ....|..++|+++|+... +++....=+..-.+..+.+.-.. ...+|+.++..+|+|+.
T Consensus 434 aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnll 512 (728)
T KOG4535|consen 434 AANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLL 512 (728)
T ss_pred HHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHH
Confidence 667777778777 778899999999999851 22222111111123333333322 26789999999999997
Q ss_pred cCCCH--HHHHHHHHCCChHHHHhh-cCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 356 SGGSN--EQIKFLVSQGCIKPLCDL-LNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 356 ~~~~~--~~~~~l~~~~~~~~L~~l-l~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
..-.+ +........+.+..+... .-...-+++=+++.+++|+++...
T Consensus 513 Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 513 QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 53211 001111111222222221 112345788888999999886543
No 122
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.01 E-value=9e-05 Score=65.98 Aligned_cols=186 Identities=19% Similarity=0.129 Sum_probs=120.8
Q ss_pred ccCChhHHHHHHHHHHHhccCC--chhHHHHHHh--CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCC
Q 011316 210 HSNDDEVLTDACWALSYLSDGT--NDKIQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 285 (488)
Q Consensus 210 ~~~~~~v~~~al~~L~~l~~~~--~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 285 (488)
.+.+++.+..++..|..++... ......+.+. .++..+...+.+....+...|+.++..++...........+ .+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence 4578999999999999988655 2222222221 56677788888888889999999999999865555444433 57
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCChhHHHHHHHHHHHhccCCC---HH
Q 011316 286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI-IGPLVNLLLNAEFEIKKEAAWAISNATSGGS---NE 361 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---~~ 361 (488)
++.|++.+.++ ...++..|..+|..++...+-.. .+ ++.+.....+.++.+|..++..+..+..... ..
T Consensus 96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 88899998888 88899999999999998534100 12 5566677788899999999999999987654 11
Q ss_pred HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011316 362 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 362 ~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
......-..+++.+...+.++++++|..+-.++..+....+.
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 111111124688889999999999999999999988766543
No 123
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.015 Score=59.15 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=125.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011316 39 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV 118 (488)
Q Consensus 39 L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 118 (488)
+.|.+...+..|.+.+....+.. .+ . ...++.+++...+.+ .+++.-.-.-+.+.++..|+.... .+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 67778888888888666554433 22 1 124666777777666 899988888888888866633222 36
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011316 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198 (488)
Q Consensus 119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 198 (488)
+.+.+=++++++.+|..|+++++.+- .++.-. .++.++.+++ .+.++.||+.|+.++..+-+-+ ......
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~-----~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld--~~l~~~ 164 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR--VKELLG-----NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLD--KDLYHE 164 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHH-----HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence 88888899999999999999999882 222211 2567778888 8889999999999999998653 233344
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011316 199 RPALPALERLIHSNDDEVLTDACWALSYLSDG 230 (488)
Q Consensus 199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 230 (488)
.|....+..++.+.++.+...|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 56777888888899999999999999988654
No 124
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0021 Score=59.67 Aligned_cols=246 Identities=12% Similarity=0.120 Sum_probs=175.3
Q ss_pred HHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccC----CC----ccHHHHHHcCCHHHHHHhhcCCC-----ChhHH
Q 011316 25 IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIE----RS----PPINEVIQSGVVPRFIEFLSRDD-----FPQLQ 91 (488)
Q Consensus 25 ~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~----~~----~~~~~~~~~~~i~~L~~lL~~~~-----~~~v~ 91 (488)
+-.++++++.++.+|.+++.++....+..+..+...+ +. ..++.+++.++++.|++-+..=+ ..+-.
T Consensus 120 ~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv 199 (536)
T KOG2734|consen 120 ILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGV 199 (536)
T ss_pred HHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhh
Confidence 3455699999999999999999999999999875432 11 23577788999999998876433 12334
Q ss_pred HHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-
Q 011316 92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN- 168 (488)
Q Consensus 92 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~- 168 (488)
..++.++-|+..-.++....+++.|.+.-|+.-+.. .-..-...|..+++-+..++.+.+...-..+++..+++.+.
T Consensus 200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~ 279 (536)
T KOG2734|consen 200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV 279 (536)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence 566778888888889999999998888887774433 34555677888888888888877777777888888888773
Q ss_pred ---cc----ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc--hhHHHHH
Q 011316 169 ---EH----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVI 239 (488)
Q Consensus 169 ---~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~ 239 (488)
++ ...+...+...+|+.+.....+........++....-+++. ....+..++.+|-....+++ +....++
T Consensus 280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfV 358 (536)
T KOG2734|consen 280 YKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFV 358 (536)
T ss_pred hhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHH
Confidence 11 13467788888888888877666666666677766555554 66678888999988887665 5556677
Q ss_pred HhCCHHHHHHhcC-CCC---------cchHhHHHHHHhHhhc
Q 011316 240 EAGVCPRLVELLR-HPS---------PSVLIPALRTVGNIVT 271 (488)
Q Consensus 240 ~~~~l~~L~~lL~-~~~---------~~v~~~a~~~L~~l~~ 271 (488)
+..++..++.... .+. .+.-+..+.+|+.+..
T Consensus 359 e~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 359 EILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 7777777666543 222 2233445555655554
No 125
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.0067 Score=62.73 Aligned_cols=253 Identities=14% Similarity=0.147 Sum_probs=146.8
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011316 116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195 (488)
Q Consensus 116 g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 195 (488)
++++.|+..+++.+..+|-.|+..++.++...|. .. ...++...+.++...+++..-..++.+|..++... -...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--EL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence 4567777777888999999999999999977762 22 12356777777766667788889999999999875 1122
Q ss_pred hhhhchHHHHHHhhcc--------CChhHHHHHHHHHHHhccCCch-hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011316 196 EQTRPALPALERLIHS--------NDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266 (488)
Q Consensus 196 ~~~~~~~~~L~~ll~~--------~~~~v~~~al~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L 266 (488)
.....++|.+++.+.- .-..||..|+.+++.+++.... ..+.+...=.-..+...+-+.+-.+|++|..++
T Consensus 416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 2335677777766652 2357899999999998865442 223233321222334445667778888888777
Q ss_pred hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH-HhcCChhHHH
Q 011316 267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL-LLNAEFEIKK 345 (488)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~ 345 (488)
-......... ..+++. +...+.- .-..|..+...++.-....+..+..+++. |+.. +.+-|..+|+
T Consensus 496 qE~VGR~~n~------p~Gi~L-is~~dy~-sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~HWd~~ire 562 (1133)
T KOG1943|consen 496 QENVGRQGNF------PHGISL-ISTIDYF-SVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVCHWDVKIRE 562 (1133)
T ss_pred HHHhccCCCC------CCchhh-hhhcchh-hhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccccccHHHHH
Confidence 6655421111 011111 1111111 22233444444444444444444433331 2111 2333777888
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 011316 346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL 391 (488)
Q Consensus 346 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al 391 (488)
.++++|.+++... ......+.++.+++.....+...+..+.
T Consensus 563 laa~aL~~Ls~~~-----pk~~a~~~L~~lld~~ls~~~~~r~g~~ 603 (1133)
T KOG1943|consen 563 LAAYALHKLSLTE-----PKYLADYVLPPLLDSTLSKDASMRHGVF 603 (1133)
T ss_pred HHHHHHHHHHHhh-----HHhhcccchhhhhhhhcCCChHHhhhhH
Confidence 8888888876432 2223345666676666666655544433
No 126
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.92 E-value=0.0023 Score=64.76 Aligned_cols=321 Identities=12% Similarity=0.104 Sum_probs=192.4
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316 35 MVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 35 l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
+...+. ++.|....++.+.+....+.. .. ...+ ..-++...++.+.-...+-++..|+++++..++ +..... .
T Consensus 454 ~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~-~~-~~~~-~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~ 527 (1005)
T KOG2274|consen 454 IDNGLVYQESPFLLLRAFLTISKFSSST-VI-NPQL-LQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-L 527 (1005)
T ss_pred HHhhcccccCHHHHHHHHHHHHHHHhhh-cc-chhH-HHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-c
Confidence 334443 566777778999988766542 11 1111 112444555666555547889999999888884 222111 2
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh-cccccHhHHHHHHHHHHHhhcCCCC
Q 011316 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF-NEHAKLSMLRNATWTLSNFCRGKPQ 192 (488)
Q Consensus 114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~~v~~~a~~~L~~l~~~~~~ 192 (488)
..+++..|.++....+.++....+.+|+..+..+|+.... .+..+.+..+.+. ..++|+.+...+-.++..++... .
T Consensus 528 ~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~ 605 (1005)
T KOG2274|consen 528 QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-A 605 (1005)
T ss_pred chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-H
Confidence 3477888888888888999999999999999988875433 3444555444443 35567877777777777777643 1
Q ss_pred CChhhhhchHHHHHHhhccCC----hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHh
Q 011316 193 PLFEQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVG 267 (488)
Q Consensus 193 ~~~~~~~~~~~~L~~ll~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~ 267 (488)
..-......+|.++..+..++ .....-++..|..+.++.+.-....+-.-+++.+.++. .+.+..+...+-.||.
T Consensus 606 ~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr 685 (1005)
T KOG2274|consen 606 NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLR 685 (1005)
T ss_pred hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence 222234568899999998765 66677788888877765443223233335677777775 4467788889999999
Q ss_pred HhhcCCchhhHHHhhCC------ChHHHHHHhcccchhhHHHHHHHHHHHHh----cCCHHHHHHHHHcCChHHHHHHH-
Q 011316 268 NIVTGDDMQTQCIINHQ------ALPCLLDLLTQNYKKSIKKEACWTISNIT----AGNVNQIQAIIEAGIIGPLVNLL- 336 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~------~~~~L~~lL~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~l~~L~~ll- 336 (488)
.+.....++...--..+ ++..+-++|+. +.-..++..++.+. .+-.......++. ++..++.-|
T Consensus 686 a~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp----~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq 760 (1005)
T KOG2274|consen 686 ALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDP----ETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQ 760 (1005)
T ss_pred HHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCC----ccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHH
Confidence 98876554433222222 22333344432 33333443444333 3222222222221 333333333
Q ss_pred hcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316 337 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVS 368 (488)
Q Consensus 337 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 368 (488)
+.....+.+.-..+++++...........|..
T Consensus 761 ~ae~lsviQsLi~VfahL~~t~~~~~l~FL~S 792 (1005)
T KOG2274|consen 761 QAETLSVIQSLIMVFAHLVHTDLDQLLNFLSS 792 (1005)
T ss_pred HhhhHHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 34467888888999999987654444444443
No 127
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0068 Score=62.69 Aligned_cols=261 Identities=13% Similarity=0.108 Sum_probs=158.1
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchh
Q 011316 72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKC 150 (488)
Q Consensus 72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~ 150 (488)
+.+++.|+..+++.+ ..++=.|+..++.++...|.. ++ ..++...+.++.. +++..-..++-+|+.++...--.
T Consensus 340 E~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 367888888889998 799999999999999866622 11 1345666665554 44666668999999998654222
Q ss_pred HHHHHhcCChHHHHHHhc-------ccccHhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHH-HhhccCChhHHHHHH
Q 011316 151 RDLVLSNGALMPLLAQFN-------EHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALE-RLIHSNDDEVLTDAC 221 (488)
Q Consensus 151 ~~~~~~~~~i~~l~~~l~-------~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~-~ll~~~~~~v~~~al 221 (488)
-..+. .+++.+++-+. ......+|..|+++++.+++..... .........+.|+ ..+-+++-..|..|.
T Consensus 415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs 492 (1133)
T KOG1943|consen 415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS 492 (1133)
T ss_pred hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence 22222 24555555552 1235679999999999999876222 2222233333322 334456777888888
Q ss_pred HHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH-hcccchhh
Q 011316 222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKS 300 (488)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~~ 300 (488)
.++........+.- .+++ ++...+.-....+.++...++.-....+..+..++ ..++.. +.+- +..
T Consensus 493 AAlqE~VGR~~n~p------~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-----~~L~t~Kv~HW-d~~ 559 (1133)
T KOG1943|consen 493 AALQENVGRQGNFP------HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-----NHLLTKKVCHW-DVK 559 (1133)
T ss_pred HHHHHHhccCCCCC------Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH-----HHHHhcccccc-cHH
Confidence 88776653322110 1111 11222222223344444444444444444444333 233332 5666 889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
+|..++++|.+++...++. ...+.++.++......+...+.-+..+.+.++.
T Consensus 560 irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 560 IRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 9999999999987754543 344678888888888888877766666666654
No 128
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.91 E-value=4.6e-05 Score=56.31 Aligned_cols=87 Identities=28% Similarity=0.443 Sum_probs=69.5
Q ss_pred HHHHHHhh-cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011316 75 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153 (488)
Q Consensus 75 i~~L~~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 153 (488)
+|.|++.| ++++ +.+|..++++|+.+.. + ..++.|..+++++++.+|..++++|+.+-
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57889999 6666 9999999999995432 1 34899999999999999999999999883
Q ss_pred HHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011316 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184 (488)
Q Consensus 154 ~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~ 184 (488)
....++.+.+.+.++.+..++..|..+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 12368889998866667778888888874
No 129
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.89 E-value=4.4e-05 Score=56.38 Aligned_cols=86 Identities=31% Similarity=0.497 Sum_probs=69.7
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 32 LPAMVAGV-WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 32 i~~l~~~L-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
||.|++.| +++++.+|..++++|.++-. ...++.|++++++++ +.+|..|+++|+.+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDED-PMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence 57899999 78999999999999985321 135899999998888 9999999999998732
Q ss_pred HHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHh
Q 011316 111 VVIDHGAVPIFVRLLSS-PTDDVREQAVWALG 141 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~ 141 (488)
...++.|.+++.+ ++..+|..|+.+|+
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2368999998887 45667899988875
No 130
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.87 E-value=0.0077 Score=58.74 Aligned_cols=297 Identities=15% Similarity=0.098 Sum_probs=168.3
Q ss_pred CHHHHHHHHHHHHHHhccCCCcc----HHHHHHcCCHHHHHHhhcCC----C--ChhHHHHHHHHHHHhcCCCc-hhhHH
Q 011316 43 DRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSRD----D--FPQLQFEAAWALTNIASGTS-ENTRV 111 (488)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~lL~~~----~--~~~v~~~a~~~L~~l~~~~~-~~~~~ 111 (488)
+.+.....+..+..++....... .....+..+++.+.++.... . ++.+...+..++..+...-+ +..+.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 56666777777777766542222 23333445788887776322 1 13555556666666665333 33333
Q ss_pred HHhCCCHHHHHHhhC----------C------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhH
Q 011316 112 VIDHGAVPIFVRLLS----------S------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 175 (488)
Q Consensus 112 ~~~~g~i~~L~~lL~----------~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v 175 (488)
+ +..+..++. . .......-...+++.+-.+..- .. ....+..++.......++..
T Consensus 136 ~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~--~~--~~~ll~~l~~~~~~~~~~~~ 206 (415)
T PF12460_consen 136 I-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSL--PD--LEELLQSLLNLALSSEDEFS 206 (415)
T ss_pred H-----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCc--cC--HHHHHHHHHHHHHcCCChHH
Confidence 3 233333222 1 1112222223333333222210 01 11256677777656667888
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHH----HHhccCCchhHHHHHHhCCHHHHHHh
Q 011316 176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL----SYLSDGTNDKIQAVIEAGVCPRLVEL 250 (488)
Q Consensus 176 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~al~~L----~~l~~~~~~~~~~~~~~~~l~~L~~l 250 (488)
+..++.+++.+...-+... ....++..+..-+ ...+...+..++..+ .-+.-....... ..+..|+.+
T Consensus 207 ~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~l 279 (415)
T PF12460_consen 207 RLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLEL 279 (415)
T ss_pred HHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHH
Confidence 8899999988876632222 3344555555444 233344444444444 333323322222 456678888
Q ss_pred cCCCCcchHhHHHHHHhHhhcCCch--------hhHHHhhCC----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011316 251 LRHPSPSVLIPALRTVGNIVTGDDM--------QTQCIINHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318 (488)
Q Consensus 251 L~~~~~~v~~~a~~~L~~l~~~~~~--------~~~~~~~~~----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 318 (488)
+.+ +++...+...++-+....+. ..+.+.+.. +++.+++..+.. +...|.....+|+++..+-|.
T Consensus 280 L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~ 356 (415)
T PF12460_consen 280 LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPK 356 (415)
T ss_pred hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCH
Confidence 877 56778888888888876232 222233333 455566666665 555888889999999986454
Q ss_pred HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 319 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
..-.---..++|.|++.|..++.+++..++.+|..+....
T Consensus 357 ~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 357 SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 3322222348999999999999999999999999998765
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.85 E-value=3.6e-05 Score=50.94 Aligned_cols=55 Identities=22% Similarity=0.552 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011316 299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 354 (488)
Q Consensus 299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 354 (488)
+.+|..|+++|++++...++....... .+++.|+.++.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999998876776666444 5999999999999999999999999875
No 132
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.84 E-value=0.00013 Score=54.21 Aligned_cols=95 Identities=18% Similarity=0.304 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011316 301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~ 380 (488)
.|+.++.+|..++.+-+......++ .+++.++..+.++++.||..|+.+|.|++.....+...++- .+++.|.++..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence 3677888888887754444555554 38999999999999999999999999999776555555544 48899999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 011316 381 CPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 381 ~~~~~v~~~al~~L~~l~~ 399 (488)
++++.|+..| +.|-++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999987655 67766653
No 133
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.019 Score=58.99 Aligned_cols=392 Identities=13% Similarity=0.096 Sum_probs=207.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+.+...++|+.--+|-+|||.+..+.+-+ -..- ..-..++....+.|. +.+ -.++..|+.+|..+....+....
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~d-f~d~--~~l~~ale~t~~~l~~d~~-lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSID-FKDP--NNLSEALELTHNCLLNDNE-LPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhcc-CCCh--HHHHHHHHHHHHHhccCCc-CchhhHHHHHHHHHHhcchhhhh
Confidence 334455556777788999999999987543 1111 122235666667777 555 78999999999999885554444
Q ss_pred HHHhC--CCHHHHHHhhCCCCHHHHHHHHH-HHhhhhCCCchhHHHHHhcCChHHHHHHhcc--cc---cHhHHHHHHHH
Q 011316 111 VVIDH--GAVPIFVRLLSSPTDDVREQAVW-ALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HA---KLSMLRNATWT 182 (488)
Q Consensus 111 ~~~~~--g~i~~L~~lL~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~---~~~v~~~a~~~ 182 (488)
.+... +.++.|+.+.+.-+.+....++. .++..+..-..+...+. .+......+++.. +. +.+-...|..+
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~Gi 618 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGI 618 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHH
Confidence 33321 45566666666643333333333 33444433222222222 2344455566632 11 22222333344
Q ss_pred HHHhh---cCCCCC---ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc
Q 011316 183 LSNFC---RGKPQP---LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP 256 (488)
Q Consensus 183 L~~l~---~~~~~~---~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 256 (488)
|..+. ..-+.. .......++|.+-.++++.-.++-+.++..+.++.....+....+. ++++.+.+.+....-
T Consensus 619 L~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~ 696 (1010)
T KOG1991|consen 619 LRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGI 696 (1010)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhH
Confidence 43332 221111 1122245566666677777778888888888877755443333333 677888888887766
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhC-----CChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 011316 257 SVLIPALRTVGNIVTGDDMQTQCIINH-----QALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 330 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~ 330 (488)
..-....-.|.|....... .+.+. -+...+..++.+.. ...-...|+..+.-+........+..+.. ++.
T Consensus 697 dyf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl-f~~ 772 (1010)
T KOG1991|consen 697 DYFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL-FLE 772 (1010)
T ss_pred HHHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH-HHH
Confidence 6777778888877653321 12211 12334444554421 22234456666665554222222222111 222
Q ss_pred HHHHHHhc--CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-----CCHHHHHHHHHHHHHHHHhhhh
Q 011316 331 PLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-----PDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 331 ~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-----~~~~v~~~al~~L~~l~~~~~~ 403 (488)
..+.-+.. .+...+..++.+..|............|-+.|....+..+.-+ ....-++.++-+|..++..++.
T Consensus 773 ~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~ 852 (1010)
T KOG1991|consen 773 LALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQD 852 (1010)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccc
Confidence 22223333 3567888888888888777766777777777776554443221 1112234455556666666432
Q ss_pred hhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHH
Q 011316 404 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445 (488)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~ 445 (488)
... ....+. +..+.+..+...--..++.+|.
T Consensus 853 ~~~---------~~e~l~--~l~~~lv~L~~~Lp~ala~ra~ 883 (1010)
T KOG1991|consen 853 PQL---------PSEVLG--QLGPALVELLLSLPEALAERAQ 883 (1010)
T ss_pred CCc---------hHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 221 122222 5567777777665444554443
No 134
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.0036 Score=62.41 Aligned_cols=286 Identities=14% Similarity=0.132 Sum_probs=157.6
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChh
Q 011316 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE 196 (488)
Q Consensus 117 ~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 196 (488)
..+.+-.++++....+...+++++.++....+. ... ..+..+--++ .+....+|-.|..+|..++...|.....
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~l~---pavs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--ELA---PAVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVTV 319 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh--hcc---hHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence 356666778888889999999999998755432 111 1344333344 7778889999999999999877544433
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011316 197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 197 ~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
.. .-+-.++.+.+..+...|..+|..-.. +.....+. .-+..++.=+.++..-+...|+.+ +|...+..
T Consensus 320 cN----~elE~lItd~NrsIat~AITtLLKTG~--e~sv~rLm--~qI~~fv~disDeFKivvvdai~s---Lc~~fp~k 388 (865)
T KOG1078|consen 320 CN----LDLESLITDSNRSIATLAITTLLKTGT--ESSVDRLM--KQISSFVSDISDEFKIVVVDAIRS---LCLKFPRK 388 (865)
T ss_pred cc----hhHHhhhcccccchhHHHHHHHHHhcc--hhHHHHHH--HHHHHHHHhccccceEEeHHHHHH---HHhhccHH
Confidence 32 234455666666666666655554332 22223232 223334444444443444444444 44433322
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
. .+.+..|..+|......+.++....++..++..+++... .++..|+..+.+. +...-+...|.-+..
T Consensus 389 ~-----~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~ 456 (865)
T KOG1078|consen 389 H-----TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGK 456 (865)
T ss_pred H-----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhc
Confidence 2 244566666666554667777778888777775454332 2455566666554 222334444444433
Q ss_pred CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC
Q 011316 357 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD 436 (488)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~ 436 (488)
.+.. .-.....+..+.+...-.+..++..|..+|.++....+.. . ....-.+...+.+.
T Consensus 457 EgP~----a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l------------~-----~sI~vllkRc~~D~ 515 (865)
T KOG1078|consen 457 EGPK----APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL------------L-----PSILVLLKRCLNDS 515 (865)
T ss_pred cCCC----CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc------------c-----ccHHHHHHHHhcCc
Confidence 2210 0011234555555555566677777777777765221111 1 11123455666777
Q ss_pred CHHHHHHHHHHHHHhc
Q 011316 437 NTEIYEKAVKILETYW 452 (488)
Q Consensus 437 ~~~v~~~a~~~l~~~~ 452 (488)
+.+++++|...+..+-
T Consensus 516 DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 516 DDEVRDRATFYLKNLE 531 (865)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 7777777777776655
No 135
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.0032 Score=59.18 Aligned_cols=405 Identities=12% Similarity=0.087 Sum_probs=204.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCCcc--------------HHHHHHcC---CHHHHHHhhcCCCChhHHHHHHHH
Q 011316 35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPP--------------INEVIQSG---VVPRFIEFLSRDDFPQLQFEAAWA 97 (488)
Q Consensus 35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~--------------~~~~~~~~---~i~~L~~lL~~~~~~~v~~~a~~~ 97 (488)
+.-.|+..++..|..|+..+..++.+. ... ...++... .-..|+-.|..+.++.+..+++.|
T Consensus 52 ~~l~lkd~~~~~ra~alqv~~~~l~gs-k~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kc 130 (728)
T KOG4535|consen 52 MTLTLKDPSPKTRACALQVLSAILEGS-KQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKC 130 (728)
T ss_pred eEEecCCCChhHHHHHHHHHHHHHHhh-HHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 444567888999999999998887653 111 11122221 223344455555557888999999
Q ss_pred HHHhcCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC------------------
Q 011316 98 LTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG------------------ 158 (488)
Q Consensus 98 L~~l~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~------------------ 158 (488)
|.++....|-.+-.+- -..++..+..++++.++.++..++..++.+...+...-+.....|
T Consensus 131 la~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~ 210 (728)
T KOG4535|consen 131 LANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDW 210 (728)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHH
Confidence 9999987776655442 223455566678889999999999999888654321111100000
Q ss_pred -----ChHHHHHHhccc---------------------------------------ccHhHHHHHHHHHHHhhcCCCCCC
Q 011316 159 -----ALMPLLAQFNEH---------------------------------------AKLSMLRNATWTLSNFCRGKPQPL 194 (488)
Q Consensus 159 -----~i~~l~~~l~~~---------------------------------------~~~~v~~~a~~~L~~l~~~~~~~~ 194 (488)
.-+.+.+.-..+ ....++-.+...|..++... ...
T Consensus 211 ~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~-~~~ 289 (728)
T KOG4535|consen 211 WKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYF-SMT 289 (728)
T ss_pred HHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHH-HHH
Confidence 000000000000 00112222222222222211 000
Q ss_pred hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-----CchhHHHHHHhCCHHHHHH-------hcCCCCcchHhHH
Q 011316 195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-----TNDKIQAVIEAGVCPRLVE-------LLRHPSPSVLIPA 262 (488)
Q Consensus 195 ~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~-----~~~~~~~~~~~~~l~~L~~-------lL~~~~~~v~~~a 262 (488)
......+...+...+...++.++.++..++..+... .++..+.-...+.+-.+.- .-++..+..+..+
T Consensus 290 ~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~ 369 (728)
T KOG4535|consen 290 QAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASA 369 (728)
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHH
Confidence 000111122222223355778888887777766532 1111111111121111111 1122345667777
Q ss_pred HHHHhHhhcCCchhhHHHhhCCChHHHHHHh----cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011316 263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLL----TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 338 (488)
Q Consensus 263 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~ 338 (488)
|..+.++....-+.. ..|--.....++ ++. +.-++.+|.++..-+.-+..-......-.+....+...+.+
T Consensus 370 Cdals~i~~~~f~~l----pn~~~T~~~~Fl~GC~d~~-~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d 444 (728)
T KOG4535|consen 370 CDALSSILPEAFSNL----PNDRQTLCITFLLGCNDSK-NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED 444 (728)
T ss_pred HHHHhhcCchhhcCC----CCcchhhhHHHHhcccchH-HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh
Confidence 888877765321110 111111111111 333 55577788887776666533222223333466677777777
Q ss_pred CChhHHHHHHHHHHHhccC---C--CHH-HHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011316 339 AEFEIKKEAAWAISNATSG---G--SNE-QIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGN 409 (488)
Q Consensus 339 ~~~~v~~~a~~aL~~l~~~---~--~~~-~~~~l~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 409 (488)
+....|.++.|+++|++.. + +++ ....+.. -.+..+.+.-. ..+.+++.++.++|+++...-+..++..
T Consensus 445 ~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~- 522 (728)
T KOG4535|consen 445 KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPT- 522 (728)
T ss_pred HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhcc-
Confidence 7888999999999999742 1 111 1122111 12333333222 3456899999999999987655333221
Q ss_pred CCccchHHHHHHhhccHHHH-HHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 011316 410 TGGVNLFAQAIDDAEGLEKI-ENLQSHDNTEIYEKAVKILETYWVEED 456 (488)
Q Consensus 410 ~~~~~~~~~~l~~~g~~~~l-~~l~~~~~~~v~~~a~~~l~~~~~~~~ 456 (488)
+...++ |.+.++ ....-..+-.|+=-|-..+.++|..+-
T Consensus 523 ------~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a 562 (728)
T KOG4535|consen 523 ------FAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA 562 (728)
T ss_pred ------HHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcCcc
Confidence 233222 222222 222344467788888888999887643
No 136
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0016 Score=64.53 Aligned_cols=327 Identities=13% Similarity=0.105 Sum_probs=168.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316 33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 112 (488)
Q Consensus 33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 112 (488)
..+-+.|+++++-+|-..++.|+++=. .+ ++ ...+|.+...|.+.+ .-+|..|..++..+-... +.+
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckLkE---~E----Ll-epl~p~IracleHrh-sYVRrNAilaifsIyk~~----~~L 168 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKLKE---PE----LL-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNF----EHL 168 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhcCc---HH----Hh-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhh----hhh
Confidence 455677788999999888888888422 12 22 357888999999999 899999999988887621 111
Q ss_pred HhCCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCC----------------CchhHHHHH-------------hcCChHH
Q 011316 113 IDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGD----------------SPKCRDLVL-------------SNGALMP 162 (488)
Q Consensus 113 ~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~~l~~~----------------~~~~~~~~~-------------~~~~i~~ 162 (488)
+. .+-+.+-.+| ...++..+++|...|...-.. ++..+-.++ +...+..
T Consensus 169 ~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~ 247 (948)
T KOG1058|consen 169 IP-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRC 247 (948)
T ss_pred cC-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHH
Confidence 11 2222223333 335666666666555433110 000000000 0011222
Q ss_pred HHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHh
Q 011316 163 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEA 241 (488)
Q Consensus 163 l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 241 (488)
+..+| .++++.++..|+.+|..++..+ .........++.++.. .|..+..-.+.-|..+.... +.+++
T Consensus 248 i~~lL-~stssaV~fEaa~tlv~lS~~p-----~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~----~~il~- 316 (948)
T KOG1058|consen 248 IYNLL-SSTSSAVIFEAAGTLVTLSNDP-----TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALH----EKILQ- 316 (948)
T ss_pred HHHHH-hcCCchhhhhhcceEEEccCCH-----HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhh----HHHHH-
Confidence 22233 2223333333333333332221 1111222223333221 12222222222222222111 11222
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh------cccchhhHHHHHHHHHHHHhcC
Q 011316 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTISNITAG 315 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~~v~~~a~~~L~nl~~~ 315 (488)
|.+-.++..|.+++-+++..++.+...++.... ... ++..|-+-+ .+..+...|.....++..++..
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN--ved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN--VED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc--HHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 455566777888999999999988887776432 111 112222211 1222456788889999999887
Q ss_pred CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHH
Q 011316 316 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGL 394 (488)
Q Consensus 316 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~~~al~~L 394 (488)
.++.. ..+++.|++.+.+.++......+..+......- +..+. ..++.|.+-+.. ...++...++|.+
T Consensus 390 Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~ 458 (948)
T KOG1058|consen 390 FPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNLRA-----SIIEKLLETFPQIRSSKICRGALWIL 458 (948)
T ss_pred ChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chHHH-----HHHHHHHHhhhhhcccccchhHHHHH
Confidence 67643 347889999999887765444444444443322 12222 234555554432 4556777788888
Q ss_pred HHHHHhhh
Q 011316 395 ENILKAGE 402 (488)
Q Consensus 395 ~~l~~~~~ 402 (488)
+..+....
T Consensus 459 GeYce~~~ 466 (948)
T KOG1058|consen 459 GEYCEGLS 466 (948)
T ss_pred HHHHhhhH
Confidence 77665443
No 137
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.0028 Score=63.12 Aligned_cols=140 Identities=12% Similarity=0.097 Sum_probs=83.1
Q ss_pred chHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011316 200 PALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 200 ~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
..+..|..+|+. +.-+-..+...++..+....++... .++..|...+.+. +...-+.++|.-+....+.
T Consensus 391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~--- 460 (865)
T KOG1078|consen 391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPK--- 460 (865)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCC---
Confidence 344455555543 2344555666666666654444333 3344455544432 2334445555555443321
Q ss_pred HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316 279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
.......+..+.....-. +..+|..|..++.++...++.. ...+...|.+++.+.|.++|..|..+|.++.
T Consensus 461 a~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 461 APNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred CCCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 112334455555555445 7789999999999998643332 2245667888999999999999999999987
No 138
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.69 E-value=0.019 Score=53.42 Aligned_cols=225 Identities=11% Similarity=0.113 Sum_probs=156.8
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh-----HHHHHHh--CCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-----IQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~-----~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
.+.+..++..+..-+-+.+..+..+..++.....+. .+.+.+. .++..|+..-. ++++...+-..|..++.
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHh
Confidence 578888888888889999999999999988654322 2223222 33444444433 55677777777777776
Q ss_pred CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc---CChHHHHHHHhcCChhHHHHHH
Q 011316 272 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 272 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
.+...+.++....+..+.+.++.+ +.++...|..++..+...++.....++.. .++.....++.+++.-+|..++
T Consensus 153 -~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 -HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp -SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred -hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 456677888888899999999999 99999999999999887667766666653 3577888889999999999999
Q ss_pred HHHHHhccCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh--c
Q 011316 349 WAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA--E 424 (488)
Q Consensus 349 ~aL~~l~~~~~~--~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--g 424 (488)
..|+.+...... -..+++.+..-+..++.+|+++...++-.|..++.-++....+.. ++...+... .
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~---------~I~~iL~~Nr~k 301 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP---------PIVDILIKNREK 301 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH---------HHHHHHHHTHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh---------HHHHHHHHHHHH
Confidence 999999865422 234555566779999999999999999999988887766544332 256655533 3
Q ss_pred cHHHHHHhhcCC
Q 011316 425 GLEKIENLQSHD 436 (488)
Q Consensus 425 ~~~~l~~l~~~~ 436 (488)
.++.+.++..+.
T Consensus 302 Ll~fl~~f~~~~ 313 (335)
T PF08569_consen 302 LLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHTTTTT-
T ss_pred HHHHHHhCCCCC
Confidence 355555554443
No 139
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.60 E-value=0.16 Score=54.93 Aligned_cols=394 Identities=10% Similarity=0.016 Sum_probs=199.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
-+..++..|.++...+|-.|+++|..+...++.-..+..+.. .+-.-+.++. ..||+.|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~----~Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQE----AVHGRLNDSS-ASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHH----HHHHhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence 455688888888899999999999999886632223333333 3333445666 79999999999987775666555
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--ccccHhHHHHHHHHHHHhhc
Q 011316 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~v~~~a~~~L~~l~~ 188 (488)
+.. .-+..-..++...+|..++..+..+|...|.+... ...+.+++. .++...++.-++.++.++--
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 443 44555556678899999999999999888875332 233444443 33334488889999988876
Q ss_pred CCCCC--ChhhhhchHHHHHHh-------hccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhc-----
Q 011316 189 GKPQP--LFEQTRPALPALERL-------IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL----- 251 (488)
Q Consensus 189 ~~~~~--~~~~~~~~~~~L~~l-------l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL----- 251 (488)
.+... .......-++..+.. .....+.+....+..=.... .....+.+... -.+..+..++
T Consensus 961 ~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~--~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ 1038 (1692)
T KOG1020|consen 961 TPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKT--MKESVKPVALAKVTHVLNLLTHCLVEKIS 1038 (1692)
T ss_pred cCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh--hhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence 65221 111111222222211 12222222222221111110 00111111111 1112222221
Q ss_pred -------CCCCcch-HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc---CC
Q 011316 252 -------RHPSPSV-LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA---GN 316 (488)
Q Consensus 252 -------~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~---~~ 316 (488)
..+...+ ....+.+|..++...|... ....+..|...|.+. ....+-...+.++-...- ..
T Consensus 1039 ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Ll----t~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~ 1114 (1692)
T KOG1020|consen 1039 EVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLL----TKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANP 1114 (1692)
T ss_pred hhhhHhhhcccchhHHHHHHHHHHHHHhcCchhc----cHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccc
Confidence 1122223 3345666666666555332 213344455555443 233333444444433322 21
Q ss_pred HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC--CCHHHHHHHHHCCChHHHHhhcCC--CC-----HHHH
Q 011316 317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG--GSNEQIKFLVSQGCIKPLCDLLNC--PD-----PRIV 387 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~~~~L~~ll~~--~~-----~~v~ 387 (488)
++..-.- +=..|+..+..........|..+++.++.. .+......... -....|-.+=++ ++ ....
T Consensus 1115 sesfL~s----LEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~-~~~k~le~~k~s~~en~~~~~~p~l 1189 (1692)
T KOG1020|consen 1115 SESFLAS----LEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFS-CYLKLLEVIKSSNNENADIVNFPKL 1189 (1692)
T ss_pred hHHHHHH----HHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHH-HHHHHHHHHHhccccccchhhhHHH
Confidence 2211111 223455555555566667777777777753 12222222111 111111111111 11 2344
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
...+..++-++.+.................. ....+.+..|..+..+.+.+++.+|..-+..++
T Consensus 1190 ~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~-~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1190 QRSIFTLGLLSRYFDFPKPSNDGKTFLQEGE-TLKEKVLILLMYFSKDKDGELRRKALINLGFIC 1253 (1692)
T ss_pred HHHHHHHHHHHHhccCCCccCCCccchhhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5666777777665544332221111111122 233456677777777778888888888776654
No 140
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.066 Score=50.22 Aligned_cols=259 Identities=11% Similarity=0.078 Sum_probs=179.6
Q ss_pred HhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCC--------ChhhhhchHHHHHHhh
Q 011316 140 LGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQP--------LFEQTRPALPALERLI 209 (488)
Q Consensus 140 L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~--~~~--------~~~~~~~~~~~L~~ll 209 (488)
+.-++. .|..-..+++.++++.++.+| .+.+.++....+..+..++..+ +.. ......++++.|++-+
T Consensus 108 mhvlAt-~PdLYp~lveln~V~slL~LL-gHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnv 185 (536)
T KOG2734|consen 108 MHVLAT-MPDLYPILVELNAVQSLLELL-GHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNV 185 (536)
T ss_pred HHhhhc-ChHHHHHHHHhccHHHHHHHh-cCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHH
Confidence 333443 355667888999999999999 8888899999999999998765 111 1123367777888777
Q ss_pred ccCCh------hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011316 210 HSNDD------EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCII 281 (488)
Q Consensus 210 ~~~~~------~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 281 (488)
..-|. .-....+..+-|+..-.+.....+++.|.+..|+.-+.. +.......|..+++-+...+.+.+...-
T Consensus 186 eRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~ 265 (536)
T KOG2734|consen 186 ERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLG 265 (536)
T ss_pred HHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhc
Confidence 64333 335667788888888887777888888888888875543 3455677788888888887776666666
Q ss_pred hCCChHHHHHHhc-----c---cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011316 282 NHQALPCLLDLLT-----Q---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 353 (488)
Q Consensus 282 ~~~~~~~L~~lL~-----~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~ 353 (488)
..+++..+++-+. + ....+.-.....+||.+... +.++..++....+..+.-+++. ....+..++.+|-.
T Consensus 266 ~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~ 343 (536)
T KOG2734|consen 266 PLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDH 343 (536)
T ss_pred CcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHH
Confidence 7788888877662 2 11344556677777777666 6777777777777766555555 45677889999988
Q ss_pred hccCCC-HHHHHHHHHCCChHHHHhhcC-C---------CCHHHHHHHHHHHHHHHHhhh
Q 011316 354 ATSGGS-NEQIKFLVSQGCIKPLCDLLN-C---------PDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 354 l~~~~~-~~~~~~l~~~~~~~~L~~ll~-~---------~~~~v~~~al~~L~~l~~~~~ 402 (488)
...+.. .+.+..+.+..++..+..++- . ...+.-++.+..|..++....
T Consensus 344 am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~~ 403 (536)
T KOG2734|consen 344 AMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNLD 403 (536)
T ss_pred HHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhcc
Confidence 877542 355666777777666666432 1 223566778888888877654
No 141
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.55 E-value=0.0011 Score=66.99 Aligned_cols=189 Identities=20% Similarity=0.165 Sum_probs=133.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH--------HHh----cCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL--------VLS----NGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 118 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~--------~~~----~~~i~~l~~~l~~~~~~~v~~~a~~~L~~ 185 (488)
...++.+|+. +++-..+..++.-+..+++.+... +.+ ...++.+++.. ...+...+.....+|++
T Consensus 817 a~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHHH
Confidence 4455566644 455555666666666655433221 111 23567777777 45566778888899999
Q ss_pred hhcCCCCCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC---cchHhH
Q 011316 186 FCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIP 261 (488)
Q Consensus 186 l~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~ 261 (488)
...+-|..... .....+|.|++.+.-+|..++..++.++..+....+.....-++ -+++.++.+-.+++ ..+|..
T Consensus 894 Vl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 894 VLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHH
Confidence 88865543332 34678899999999999999999999999887655444333332 56777777766654 579999
Q ss_pred HHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 262 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
|+.+|..+.+.-|...-......++..+.+.|+++ ..-+|++|..+=.+
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence 99999999997776666666778899999999999 88999999876443
No 142
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.54 E-value=0.00051 Score=51.01 Aligned_cols=68 Identities=16% Similarity=0.336 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhc
Q 011316 90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSN 157 (488)
Q Consensus 90 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (488)
.+...++++++++..++...+.+.+.|+++.++.... ..+|-+++.|++++.+++.++++.++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567789999999999999999999999999999754 4789999999999999999999887776553
No 143
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.014 Score=61.26 Aligned_cols=243 Identities=12% Similarity=0.099 Sum_probs=153.2
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh--CCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hhHHHH
Q 011316 78 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLV 154 (488)
Q Consensus 78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~ 154 (488)
+.....+.++..+|..+.++|..++.. +.......+ ..+.+.|..-+++.....+...+.+|..|....+ +....+
T Consensus 658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 334444443489999999999999984 322221111 1344566666666777788888888888876554 222222
Q ss_pred HhcCChHHHHHHhcccccHhHHHHHHHHHHHhh--cCC---C-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC--RGK---P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 155 ~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~--~~~---~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
.. .++.++-.+ ++.+...++.+..+|..++ ... . .......+.+++.+...+-.....+....+-++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 21 344444444 7778888999999998888 222 1 1224455666666666654444444444355555555
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHH
Q 011316 229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 308 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~ 308 (488)
....+......-.++++.+...|.+.+++++..|+..+..++...+...-......+++.+..+++.. ...+|...-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 43322222222235667777778899999999999999999987776544433445788888888776 78888888888
Q ss_pred HHHHhc-CCHHHHHHHHH
Q 011316 309 ISNITA-GNVNQIQAIIE 325 (488)
Q Consensus 309 L~nl~~-~~~~~~~~l~~ 325 (488)
+-.+++ ...+..+.+..
T Consensus 893 lekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHhCHHHHHhhCH
Confidence 888877 33555555544
No 144
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.53 E-value=0.025 Score=55.42 Aligned_cols=238 Identities=15% Similarity=0.133 Sum_probs=150.9
Q ss_pred ccHHHHHHHh----------cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-----CChhHHHHH
Q 011316 30 ESLPAMVAGV----------WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEA 94 (488)
Q Consensus 30 ~~i~~l~~~L----------~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~~v~~~a 94 (488)
+++..|.+.- .+.++.+..+|+++|+|++-.. ....+.+.+.|..+.+++.|+.. + .++..-.
T Consensus 22 ~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~ 99 (446)
T PF10165_consen 22 EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLD 99 (446)
T ss_pred HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHH
Confidence 6666666665 2577899999999999988765 56677778999999999999876 4 7888999
Q ss_pred HHHHHHhcCCCchhhHHHHhC-CCHHHHHHhhCC-----------------CCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011316 95 AWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLS 156 (488)
Q Consensus 95 ~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 156 (488)
.+.+.-++...++.+..+++. +++..+...+.. .+......++.++.|+..+.+.... -..
T Consensus 100 ~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~ 178 (446)
T PF10165_consen 100 SRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEF 178 (446)
T ss_pred HHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhh
Confidence 999988888788888887755 677777765532 1345566788888998766544222 012
Q ss_pred cCChHHHHHHhccc--------ccHhHHHHHHHHHHHhhcCC------------CCCChhhhhchHHHHHHhhc----cC
Q 011316 157 NGALMPLLAQFNEH--------AKLSMLRNATWTLSNFCRGK------------PQPLFEQTRPALPALERLIH----SN 212 (488)
Q Consensus 157 ~~~i~~l~~~l~~~--------~~~~v~~~a~~~L~~l~~~~------------~~~~~~~~~~~~~~L~~ll~----~~ 212 (488)
...++.++..+... .......+++.+|.++--.. ...........+..++.+|. ..
T Consensus 179 ~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~ 258 (446)
T PF10165_consen 179 SPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKY 258 (446)
T ss_pred hHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhc
Confidence 23344444443211 23356677888888772111 00011122345566666654 21
Q ss_pred ----ChhHHHHHHHHHHHhccCCchhHHHHHHhC-----------------CHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 213 ----DDEVLTDACWALSYLSDGTNDKIQAVIEAG-----------------VCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 213 ----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~-----------------~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
-.......+.+|..++.......+ .++.. +-..|++++.++.+.++..+...+..+|.
T Consensus 259 ~~~~l~~~l~PlL~lL~~~~~~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 259 EALKLDELLTPLLTLLTRLARAAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred CcccchhhHhhHHHHHHHHHHhcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 135677788888888877644333 33333 34455566655556666666666666554
No 145
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.52 E-value=0.017 Score=56.97 Aligned_cols=295 Identities=12% Similarity=0.099 Sum_probs=153.8
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011316 77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 156 (488)
Q Consensus 77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 156 (488)
.++..-+ ++ +..+..|+..+......-|+..+.. +..++.++++++..+|..|++.|-.+|.++++....+
T Consensus 27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-- 97 (556)
T PF05918_consen 27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-- 97 (556)
T ss_dssp HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence 3444444 34 7899999999999999888887754 7899999999999999999999999999887654544
Q ss_pred cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhc-cCCc
Q 011316 157 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLS-DGTN 232 (488)
Q Consensus 157 ~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~-~~~~ 232 (488)
...|+++| .+.++.-...+-.+|..+...+ ..+.+..+...+. +++..+++.++..|..-. .-..
T Consensus 98 ---aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 98 ---ADVLVQLL-QTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp ---HHHHHHHT-T---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred ---HHHHHHHH-hcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 45788888 6666666666667776665543 1344555555554 578889999998885422 2111
Q ss_pred hhHH--HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC----CchhhHHHhhCCChHHHHHHh------cccchhh
Q 011316 233 DKIQ--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DDMQTQCIINHQALPCLLDLL------TQNYKKS 300 (488)
Q Consensus 233 ~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~~~~L~~lL------~~~~~~~ 300 (488)
+... .-.+.-++..+.+.|.+-..+--...+.+|..+-.. .....+.+ ++.+.... ... +++
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D~e 240 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-DPE 240 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-SHH
T ss_pred HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-CHH
Confidence 1111 112223445566667654433344455556555541 22222222 23333222 111 222
Q ss_pred HHHHHHHHHHH----Hhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHH
Q 011316 301 IKKEACWTISN----ITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP 374 (488)
Q Consensus 301 v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~ 374 (488)
.-...+.++.. ++. .+......+.+ .++|.+-.+ ..+.+..-+.+++.++..........+++ .++..
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~ 314 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQL 314 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHH
Confidence 22222222222 222 23444444444 477765555 45677788999999987764332333321 22333
Q ss_pred HHhhcCCC--CH----HHHHHHHHHHHHHHHhhhh
Q 011316 375 LCDLLNCP--DP----RIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 375 L~~ll~~~--~~----~v~~~al~~L~~l~~~~~~ 403 (488)
|...+-.. .+ ..++..+.+++.+....+.
T Consensus 315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~ 349 (556)
T PF05918_consen 315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN 349 (556)
T ss_dssp HHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence 33333322 22 3567777778877765543
No 146
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.51 E-value=0.015 Score=50.73 Aligned_cols=256 Identities=18% Similarity=0.230 Sum_probs=153.8
Q ss_pred HHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011316 75 VPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153 (488)
Q Consensus 75 i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 153 (488)
+..+.+.|...+. ..-+..|+..|.++... +.+..+.+...+++...+...+.+|+.....
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~------- 66 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE------- 66 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence 3444455544321 23455666666666651 2256666666666666777777777765421
Q ss_pred HHhcCChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011316 154 VLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 154 ~~~~~~i~~l~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 232 (488)
..++.++..+. .+..+-++..|..+|..+... ..++.+-++.+++-..+++.+..++..+-..+.
T Consensus 67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcch----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 25677777764 234566777888888887632 456666677766667777766666665542211
Q ss_pred hhH----HHH--------HHhCCHHHHHHhcCC-CCc-chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccch
Q 011316 233 DKI----QAV--------IEAGVCPRLVELLRH-PSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 298 (488)
Q Consensus 233 ~~~----~~~--------~~~~~l~~L~~lL~~-~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~ 298 (488)
... ... ...+-+..+-..+.+ ..+ --|..+++.|.|+-. + ..+..+.+-+..+ +
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-S 200 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-S 200 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-h
Confidence 000 000 000112222222222 111 223455555555422 1 2244566667777 8
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHH
Q 011316 299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC 376 (488)
Q Consensus 299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~ 376 (488)
.-.|.+++++++.+-+. . .++.|.+.|.+. ++-||..|+.||+.++. ++ .++.|.
T Consensus 201 alfrhEvAfVfGQl~s~--~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~ 257 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSP--A---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLK 257 (289)
T ss_pred HHHHHHHHHHHhhccch--h---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHH
Confidence 88999999999998542 2 577777777664 78899999999999974 23 466777
Q ss_pred hhcCCCCHHHHHHHHHHHHHH
Q 011316 377 DLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 377 ~ll~~~~~~v~~~al~~L~~l 397 (488)
+.++++++-+++.|..+|..+
T Consensus 258 e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 258 EYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 888988888888887777644
No 147
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.49 E-value=0.00022 Score=47.14 Aligned_cols=55 Identities=31% Similarity=0.511 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316 214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
+.++..++++|++++...++..+... ..+++.|..+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999888776666544 48899999999999999999999999875
No 148
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.48 E-value=0.0027 Score=47.27 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011316 344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (488)
|..++.+|..++..-......++- .+++++...+.++++.+|..|+++|.++.+..... ....|.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----------~l~~f~-- 67 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----------ILPYFN-- 67 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH--
Confidence 566777887776655444444433 48999999999999999999999999998776532 233333
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316 424 EGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 424 g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
..++.|-++..++++.|+..| .++.++.
T Consensus 68 ~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 68 EIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 347889999999999998776 5555543
No 149
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.46 E-value=0.014 Score=54.41 Aligned_cols=203 Identities=12% Similarity=0.082 Sum_probs=142.6
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-----hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-----TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~ 310 (488)
+.+...+.+..|+..|..-+-+.|..+..+.+++.+..... ...+ .....+.+..++..-.++++-..+...|.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl-~~~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYL-ERHRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHH-HT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHH-HhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence 44666789999999998888889999999999998864433 2222 22323334444433335566677777788
Q ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC---CChHHHHhhcCCCCHHHH
Q 011316 311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---GCIKPLCDLLNCPDPRIV 387 (488)
Q Consensus 311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~~~~L~~ll~~~~~~v~ 387 (488)
.++.. +...+.++....+..+++.++.++.++...|..++..+.... +.....+... ..+.....++.+++.-++
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 77766 667778888889999999999999999999999999987654 3343333333 346778889999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450 (488)
Q Consensus 388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 450 (488)
.+++..|+.++........ ....+.+..-++.+..++.+++..++-.|-.+..-
T Consensus 227 rqslkLL~ellldr~n~~v---------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv 280 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNV---------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV 280 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHH---------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHH---------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 9999999999866554332 34555566668888888999998898887776543
No 150
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.46 E-value=0.023 Score=57.85 Aligned_cols=238 Identities=15% Similarity=0.102 Sum_probs=154.3
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011316 77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVL 155 (488)
Q Consensus 77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 155 (488)
.+...+.....|..-..+.+.+...+...+.+...+ . .++...+..+. +..+-++..|+++++..+.... +.. .
T Consensus 453 ~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~--~ 527 (1005)
T KOG2274|consen 453 MIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLL-Q-HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLS--L 527 (1005)
T ss_pred HHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHH-H-HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-ccc--c
Confidence 333444444447777788888887666322222211 1 12334444443 4667788888888888873322 111 1
Q ss_pred hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--cCChhHHHHHHHHHHHhccCCch
Q 011316 156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTND 233 (488)
Q Consensus 156 ~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~ 233 (488)
..+++..|+++. ...+.++......+|+..+..++.........+.|..+.++. ++|+.+...+-.++..++.....
T Consensus 528 ~p~ild~L~qla-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~ 606 (1005)
T KOG2274|consen 528 QPMILDGLLQLA-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN 606 (1005)
T ss_pred chHHHHHHHHHc-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh
Confidence 123455666666 566778888899999999999887777777888888887764 46787777777777777653221
Q ss_pred hHHHHHHhCCHHHHHHhcCCCC----cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316 234 KIQAVIEAGVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 234 ~~~~~~~~~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
. ..+. ...+|.+++.|..+. +.....++.+|..+.+..+.-.-..+-.-+++.+.++.-+..+..+-..+.-+|
T Consensus 607 ~-g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcL 684 (1005)
T KOG2274|consen 607 Y-GPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECL 684 (1005)
T ss_pred h-cchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHH
Confidence 1 2122 267899999998765 566677888888888766544333444456777877665554778888888899
Q ss_pred HHHhcCCHHHHHH
Q 011316 310 SNITAGNVNQIQA 322 (488)
Q Consensus 310 ~nl~~~~~~~~~~ 322 (488)
..+.....++...
T Consensus 685 ra~Is~~~eq~~t 697 (1005)
T KOG2274|consen 685 RALISVTLEQLLT 697 (1005)
T ss_pred HHHHhcCHHHHHh
Confidence 8888765555443
No 151
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.018 Score=50.13 Aligned_cols=254 Identities=17% Similarity=0.193 Sum_probs=156.0
Q ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 33 PAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 33 ~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
..+.+.|.. ....-+.+|+..|+++.... .+..+.+...+++ .-.+...+.+|+....
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~------- 65 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD------- 65 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc-------
Confidence 344445543 34466777888888765432 2555556655554 5666777778777665
Q ss_pred HHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 111 VVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
...++.|+..+.. ..+-+|..|..+|+++. + +. ..+.+-+.. +++-..++..+..++..+-.
T Consensus 66 ----~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 66 ----EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-PE---------SLEILTKYI-KDPCKEVRETCELAIKRLEW 129 (289)
T ss_pred ----chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-hh---------hHHHHHHHh-cCCccccchHHHHHHHHHHH
Confidence 3458888887765 56788889999999885 2 22 233344444 55556666666666666543
Q ss_pred CCCCC------Chh-------hhhchHHHHHHhhccCC-hh-HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC
Q 011316 189 GKPQP------LFE-------QTRPALPALERLIHSND-DE-VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253 (488)
Q Consensus 189 ~~~~~------~~~-------~~~~~~~~L~~ll~~~~-~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 253 (488)
..... ... ...+-+..+-..+.+.+ +. -+..++..|+|+... ..+..+..-+..
T Consensus 130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E-----------eaI~al~~~l~~ 198 (289)
T KOG0567|consen 130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE-----------EAINALIDGLAD 198 (289)
T ss_pred hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH-----------HHHHHHHHhccc
Confidence 22000 000 11222333443343332 22 245566666665321 224555666667
Q ss_pred CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Q 011316 254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 332 (488)
Q Consensus 254 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L 332 (488)
++.-.|..+..+++.+-. + ..++.+.+.|. ..+++.+|.+|+.+|+.++. ++ .++.|
T Consensus 199 ~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL 256 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVL 256 (289)
T ss_pred chHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHH
Confidence 777889999999998854 2 23566666553 34478999999999998864 33 56777
Q ss_pred HHHHhcCChhHHHHHHHHHHHhc
Q 011316 333 VNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 333 ~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
.+.+.+.++-|++.+..+|.-.-
T Consensus 257 ~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 257 KEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHH
Confidence 88888888888888887776554
No 152
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.39 E-value=0.0071 Score=51.27 Aligned_cols=93 Identities=24% Similarity=0.258 Sum_probs=75.6
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 292 (488)
Q Consensus 213 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 292 (488)
++.++..++.+++.++...+...+ ..++.+...|.++++.+|..|+.+|..|.....-.. +..++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence 578899999999999977665444 667899999999999999999999999987432221 22344778888
Q ss_pred hcccchhhHHHHHHHHHHHHhcC
Q 011316 293 LTQNYKKSIKKEACWTISNITAG 315 (488)
Q Consensus 293 L~~~~~~~v~~~a~~~L~nl~~~ 315 (488)
+.++ ++.+|..|...+..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999875
No 153
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.38 E-value=0.0064 Score=49.18 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=103.2
Q ss_pred hHHHHHhcCChHHHHHHhccccc-----HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHH
Q 011316 150 CRDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACW 222 (488)
Q Consensus 150 ~~~~~~~~~~i~~l~~~l~~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~ 222 (488)
+...++..+++..|++++..+.. .++...++.++..|.......+......++..++.++... +..+...++.
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 34567788999999999955442 4778889999999988875666667778889999888754 6899999999
Q ss_pred HHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011316 223 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 223 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
.|-+++.+++.....+.+.=-++.|+.+|...+++++..++..+..+....++.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 999999988876676666566899999999999999999999888887755543
No 154
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.37 E-value=0.0084 Score=48.49 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=102.0
Q ss_pred HHHHHhCCHHHHHHhcCCCC------cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHH
Q 011316 236 QAVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT 308 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~ 308 (488)
..+++.+++..|++++.++. .++...++.++..|..+.. ..-..++..++..+......+. +..+...|...
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 45777899999999998755 2566678888888877643 2233455677888888887653 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHH
Q 011316 309 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL 366 (488)
Q Consensus 309 L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 366 (488)
|-+++..++.....+.+.=-++.|+..++..+.+++.+|...+..+...++...++.+
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i 141 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI 141 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999998777777776666799999999999999999999999999888776655543
No 155
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.34 E-value=0.00063 Score=41.66 Aligned_cols=39 Identities=38% Similarity=0.753 Sum_probs=35.8
Q ss_pred chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011316 106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144 (488)
Q Consensus 106 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~ 144 (488)
++.+..+.+.|+++.|++++.+++++++..++++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788889999999999999999999999999999986
No 156
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.33 E-value=0.015 Score=49.21 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=75.1
Q ss_pred CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH
Q 011316 255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 334 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ 334 (488)
++.+|..++-+++.++...+.... ..++.+...|+++ ++.||+.|+.++..|...+.-. .+..++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence 467899999999999987765444 4678899999999 9999999999999998742211 11224477788
Q ss_pred HHhcCChhHHHHHHHHHHHhccC
Q 011316 335 LLLNAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 335 ll~~~~~~v~~~a~~aL~~l~~~ 357 (488)
++.+++++++..|..++..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999876
No 157
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.019 Score=55.37 Aligned_cols=208 Identities=16% Similarity=0.173 Sum_probs=122.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhh
Q 011316 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 197 (488)
Q Consensus 118 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 197 (488)
.+.+..++..++.-.-+.|...++-+.-+.... .++..+...-.......+.+...-.+.-+..+.
T Consensus 448 ye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~-------eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr------- 513 (926)
T COG5116 448 YEKLKELLKNDRALLGEAAVYGMGLLMLGTWSV-------EAIEDMRTYAGETQHERIKRGLGIGFALILYGR------- 513 (926)
T ss_pred HHHHHHHHhcchhhhhhhhhhccceeeecCCCH-------HHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh-------
Confidence 456666666666666666655555443322210 023333333323333344332222222111111
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh-cCCCCcchHhHHHHHHhHhhcCCchh
Q 011316 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 198 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
...+-..+.+++.+.++-++.....++.---....+ .+++..++.. ..+.+.+||++|.-+|+-+|...+
T Consensus 514 qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-- 584 (926)
T COG5116 514 QEMADDYINELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-- 584 (926)
T ss_pred HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecCc--
Confidence 112233566777777777776665555432212111 2567777777 567788999999999999888544
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
..+...+++|..+.++.||...+.+|+-.+.+..... .+..|-.++.+...-||+.|+.+++-+..
T Consensus 585 -------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 585 -------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred -------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 4556677777777689999999999998877533221 35555566677777899999999988876
Q ss_pred CCCHHH
Q 011316 357 GGSNEQ 362 (488)
Q Consensus 357 ~~~~~~ 362 (488)
.++++.
T Consensus 651 Q~n~~L 656 (926)
T COG5116 651 QCNPEL 656 (926)
T ss_pred hcCccc
Confidence 665443
No 158
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.30 E-value=0.012 Score=54.41 Aligned_cols=200 Identities=16% Similarity=0.202 Sum_probs=124.3
Q ss_pred HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh--hCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHH
Q 011316 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQI 320 (488)
Q Consensus 245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~ 320 (488)
...+..+.+.....|..++..+.++..... ....+. ...+++.+.+.++.+ ..+-+..|+.+++-++. +.....
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence 334445555668899999999888876432 112221 224677788888777 54556667676666654 222334
Q ss_pred HHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccC--CCHHHHHHHHHCCChHHH--HhhcC----------CCCH
Q 011316 321 QAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG--GSNEQIKFLVSQGCIKPL--CDLLN----------CPDP 384 (488)
Q Consensus 321 ~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~~~~L--~~ll~----------~~~~ 384 (488)
..+++ .+.|.|.+.+.++ ...+|..++.+|+-++.. .+.+....+.+ .++.+ ....+ .+++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 45554 3788899998876 345666777677666543 22333321111 23311 11122 1235
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 011316 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPL 461 (488)
Q Consensus 385 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 461 (488)
.+...|+.+..-++...+... +...+.+ .++.|..++.+++.+|+..|...|.-+|+...+.+++
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~----------~~~~~~~--~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~ 265 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSK----------LEDLLEE--ALPALSELLDSDDVDVRIAAGEAIALLYELARDHEED 265 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHH----------HHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 788999999888886655422 2333332 3889999999999999999999999998876655444
No 159
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.26 E-value=0.03 Score=51.89 Aligned_cols=197 Identities=13% Similarity=0.118 Sum_probs=125.4
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC--Cchhh
Q 011316 202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTG--DDMQT 277 (488)
Q Consensus 202 ~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~ 277 (488)
+...+..+.......|+.++..+.++.....- .+.+.+ ..++..+.+.++.+..+-+..|+.+++-++-. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 34445555666788999999999988754321 122221 24677788888887766677788877777664 22344
Q ss_pred HHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHH--HHhc----------CCh
Q 011316 278 QCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVN--LLLN----------AEF 341 (488)
Q Consensus 278 ~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~--ll~~----------~~~ 341 (488)
..+++ .+.+.|.+++.++. ...+|..++.+|+-++. ...+......+ .+..+.. ..+. +++
T Consensus 124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 44554 57778888887652 34566666666665543 33443332222 2332211 1221 134
Q ss_pred hHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011316 342 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 342 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
.+...|+.+.+-++...+........+ ..++.|..+|++++.+||..|-++|.-+++....
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 688888888888876665533444333 4689999999999999999999999988877664
No 160
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.046 Score=54.61 Aligned_cols=298 Identities=15% Similarity=0.087 Sum_probs=167.7
Q ss_pred HHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----C---CChhHHHHHHHHHHHhcC--CCchhhHHHHhCCCHH
Q 011316 49 DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D---DFPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVP 119 (488)
Q Consensus 49 ~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----~---~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~ 119 (488)
.|+..+..+.++.+..+. .|.++.+...|.. + +++.-.+.|++.++++.. ..+....-+++.=+++
T Consensus 389 aal~fl~~~~sKrke~Tf-----qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~ 463 (970)
T COG5656 389 AALFFLIISKSKRKEETF-----QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVN 463 (970)
T ss_pred HHHHHHHHHhcccchhhh-----hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 356666665555422222 4788888888832 1 224566778888888765 3344444455556678
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC--Chhh
Q 011316 120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP--LFEQ 197 (488)
Q Consensus 120 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~ 197 (488)
.++..++++.--++..|+..++.+..+ +++...-..+.+...+.+ ++++-.++..|+.++..+..+.... -...
T Consensus 464 hv~P~f~s~ygfL~Srace~is~~eeD---fkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sah 539 (970)
T COG5656 464 HVIPAFRSNYGFLKSRACEFISTIEED---FKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAH 539 (970)
T ss_pred HhhHhhcCcccchHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhh
Confidence 888888999999999999999999544 233333334566666777 5578889999999999888775111 1112
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHH-hccCCchhHHHHHH---hCCHHHHHHhcCCCC------cchHhHHHHHHh
Q 011316 198 TRPALPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIE---AGVCPRLVELLRHPS------PSVLIPALRTVG 267 (488)
Q Consensus 198 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~-l~~~~~~~~~~~~~---~~~l~~L~~lL~~~~------~~v~~~a~~~L~ 267 (488)
..+.++.++.+-+.-+.++...++..+.. .+..-......+.. ...+.....++.+++ ++-+..|.++|.
T Consensus 540 Vp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~ 619 (970)
T COG5656 540 VPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILR 619 (970)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHH
Confidence 23344444444333355555555544432 22221111111211 022233333443331 233444555554
Q ss_pred Hhhc---C--CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh-
Q 011316 268 NIVT---G--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF- 341 (488)
Q Consensus 268 ~l~~---~--~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~- 341 (488)
.+.. . +....-.-++....|.+--++++. -.+.-.+|+..+-++.....+.. -+.-|+++.+.+++.+...
T Consensus 620 T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~ 696 (970)
T COG5656 620 TIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITA 696 (970)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchh
Confidence 4432 1 111111222345666666677777 67777888888887765422211 1223455555555555543
Q ss_pred hHHHHHHHHHHHhccCC
Q 011316 342 EIKKEAAWAISNATSGG 358 (488)
Q Consensus 342 ~v~~~a~~aL~~l~~~~ 358 (488)
.-...+.-++.|+...+
T Consensus 697 ~y~ee~~~al~nfityG 713 (970)
T COG5656 697 VYSEEVADALDNFITYG 713 (970)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 55678888999988766
No 161
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.063 Score=53.58 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=91.8
Q ss_pred HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011316 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
+.+-+++.+.+|-+|...+.+++.--.+.. ..+++..|+..--+..+.+||+.|.-+|+-++..+++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------ 588 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------ 588 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh------
Confidence 445566677788888887776654333222 2356667777743333999999999999999988777
Q ss_pred HcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316 325 EAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 325 ~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
.++..+++|..+ ++.||--++.+|+-.+.+..... .+..|..+.+++..-||+.|+-++.-++.
T Consensus 589 ---~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 589 ---QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred ---hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 456667777665 89999999999998877543222 24444455567777889889888877654
No 162
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.24 E-value=0.00099 Score=40.75 Aligned_cols=39 Identities=46% Similarity=0.640 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316 317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
++....+.+.|+++.|+.++.+++++++..++++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346777889999999999999889999999999999986
No 163
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.22 E-value=0.019 Score=57.81 Aligned_cols=238 Identities=15% Similarity=0.083 Sum_probs=152.6
Q ss_pred HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH-hhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhc
Q 011316 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLS 228 (488)
Q Consensus 151 ~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~ 228 (488)
+...+..|+...++++. ....+..+.....+|.. +.-. .......++.+...+++. ...-...++.++.|++
T Consensus 497 ~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f~-----~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa 570 (748)
T KOG4151|consen 497 RAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDFP-----GERSYEVVKPLDSALHNDEKGLENFEALEALTNLA 570 (748)
T ss_pred cCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCCC-----CCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence 34456677888888887 55556666667777761 1111 111123444444444432 2233567888999999
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC-CChHHHHHHhcccchhhHHHHHHH
Q 011316 229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACW 307 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~~~~~v~~~a~~ 307 (488)
..+....+.+.+...++.+-..+..+++..+..++..+.||..+..-..+.+.+. ..++.....+... ......+++.
T Consensus 571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~ 649 (748)
T KOG4151|consen 571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG 649 (748)
T ss_pred CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence 8776666668887777777777888899999999999999998766555556663 3444444455554 7777777777
Q ss_pred HHHHHhcCCHHHHHH-HHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHH
Q 011316 308 TISNITAGNVNQIQA-IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 386 (488)
Q Consensus 308 ~L~nl~~~~~~~~~~-l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v 386 (488)
++..+..-....+.. .--......+..++.+.+..++...+....|+. ....+....+.+...++.+...-.......
T Consensus 650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~-~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~ 728 (748)
T KOG4151|consen 650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF-EALFEIAEKIFETEVMELLSGLQKLNRAPK 728 (748)
T ss_pred cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH-HHHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence 777665533333332 222347788889999999999999999999954 444566666666666666655444333333
Q ss_pred HHHHHHHHHH
Q 011316 387 VTVCLEGLEN 396 (488)
Q Consensus 387 ~~~al~~L~~ 396 (488)
+..+..+|..
T Consensus 729 ~~~~~~~l~~ 738 (748)
T KOG4151|consen 729 REDAAPCLSA 738 (748)
T ss_pred hhhhhhHHHH
Confidence 4444444433
No 164
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.059 Score=51.30 Aligned_cols=270 Identities=14% Similarity=0.112 Sum_probs=147.9
Q ss_pred CCCHHHHHHhh----CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316 115 HGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 115 ~g~i~~L~~lL----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
.|.+..++..+ .+++..+|..|++.|+|.+...|.- ..-...-.+..++..|.+..+.+|+-.+..+|..+....
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~k-v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDK-VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHH-HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 34444444433 4478899999999999999884431 122222356677777767778899999999988887654
Q ss_pred CCCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH-HHHHH--hCCHHHHHHhcCCCCcchHhHHHHHH
Q 011316 191 PQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIE--AGVCPRLVELLRHPSPSVLIPALRTV 266 (488)
Q Consensus 191 ~~~~~~-~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L 266 (488)
...... ..-.+.-.+..+..+.+++++..+...++.++....... ..+.+ .+....++-.+.+++|.+. .||+..
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~ 410 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSE 410 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHH
Confidence 322222 234455566777888999999999999888874332221 22221 1333455555666766544 456666
Q ss_pred hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH-HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011316 267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK-EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 345 (488)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 345 (488)
...+.-+- .++.. .++++ +.+ ...-...+. ..-| ...+....++....... ....++++.-+.++.
T Consensus 411 ~~~c~p~l-~rke~--~~~~q---~~l-d~~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~ 477 (533)
T KOG2032|consen 411 LRTCYPNL-VRKEL--YHLFQ---ESL-DTDMARFQAFYNQW-CIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVRE 477 (533)
T ss_pred HHhcCchh-HHHHH--HHHHh---hhh-HHhHHHHHHHHHHH-HHHHhhhCHHHHHHHHH-----hchhheecchHHHHH
Confidence 55554221 11111 01111 122 110111111 1111 11222223333322222 122233333335555
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316 346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 346 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
.+..--.++..+-.++...+..-..+...|..+...+-++++..+.+++..+..
T Consensus 478 aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 478 AAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 555555555554444444444333456667777788889999999999887653
No 165
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.0078 Score=60.75 Aligned_cols=223 Identities=13% Similarity=0.099 Sum_probs=142.5
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc
Q 011316 78 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 157 (488)
Q Consensus 78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (488)
.+..+.++. +.+|..+++.+..+.+. .+....+...+++...+..+++.++-+--+|+..+..+|...|+
T Consensus 732 ai~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-------- 801 (982)
T KOG4653|consen 732 AISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-------- 801 (982)
T ss_pred HHHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------
Confidence 344456666 78999999999999983 35566666779999999999999999999999988888865443
Q ss_pred CChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh
Q 011316 158 GALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 234 (488)
Q Consensus 158 ~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 234 (488)
..++.+...-.... .++.+-.+-.++.++..............++...+..+++++...+..++..+++++......
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 34555555331111 123444455666666655433333444566777778888888888999999999998643322
Q ss_pred HHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhh---CCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316 235 IQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQALPCLLDLLTQNYKKSIKKEACWTIS 310 (488)
Q Consensus 235 ~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~~~~L~~lL~~~~~~~v~~~a~~~L~ 310 (488)
....+- .++..++.+.. +.++-+|++|+..+..+..+.....-.+.. ......+........+..+|..|+.++-
T Consensus 882 vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 882 VSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 221111 34455555554 356789999999999998866543332221 1222333333333325556666655544
Q ss_pred H
Q 011316 311 N 311 (488)
Q Consensus 311 n 311 (488)
.
T Consensus 961 e 961 (982)
T KOG4653|consen 961 E 961 (982)
T ss_pred H
Confidence 3
No 166
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=97.11 E-value=0.027 Score=53.63 Aligned_cols=222 Identities=13% Similarity=0.147 Sum_probs=135.8
Q ss_pred HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccc
Q 011316 93 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHA 171 (488)
Q Consensus 93 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~ 171 (488)
.|++.|-.+....+..-..+.+.+++..++..++.+-....+. .-...-.... ++.+..... -..+ ...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence 4667777777767777788888999999999886532222221 0000000000 000000000 0000 111
Q ss_pred cHhHHHHHHHHHHHhhc-CC---CCCChhhh-hchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011316 172 KLSMLRNATWTLSNFCR-GK---PQPLFEQT-RPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGV 243 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~-~~---~~~~~~~~-~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 243 (488)
.....+..+.++..+.. +. ....-... ..+...|..++++. -+.+...++.++..+..+.+.....+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 12334445555555555 22 11122233 45677777777765 3788999999999999999988898999999
Q ss_pred HHHHHHhcC-C---CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhH-HH-HHHH----HHHHHh
Q 011316 244 CPRLVELLR-H---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI-KK-EACW----TISNIT 313 (488)
Q Consensus 244 l~~L~~lL~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v-~~-~a~~----~L~nl~ 313 (488)
++.+++.+. . ++.++....-.+++.+|- +....+.+.+.+.++.+++++.++..... +. ..+. .+-.|.
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~ 231 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM 231 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999988 4 355677777788888888 56677788889999999999988732211 11 2333 344566
Q ss_pred cCCHHHHHHHHH
Q 011316 314 AGNVNQIQAIIE 325 (488)
Q Consensus 314 ~~~~~~~~~l~~ 325 (488)
++.+..+..+++
T Consensus 232 RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 232 RHHPSLKPDIID 243 (379)
T ss_pred ccCHHHHHHHHH
Confidence 676766555554
No 167
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.0071 Score=60.71 Aligned_cols=243 Identities=14% Similarity=0.070 Sum_probs=159.9
Q ss_pred CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHh-hhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011316 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 183 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L 183 (488)
...-+...++.|+...|+++.....+..+.....+|. .+...... ....++++...+..+....-.-.++.++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 4455666778899999999988877888888888887 33322211 1124555555553333222334677788
Q ss_pred HHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCCCCcchHhH
Q 011316 184 SNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSVLIP 261 (488)
Q Consensus 184 ~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~ 261 (488)
.||+..+ ...........++.+-.++..+++..+..++..+.||..++.-....+.+. ..++.....+.........+
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 8888766 333334445566666777778899999999999999998766555555553 34555555555555666666
Q ss_pred HHHHHhHhhcCCchhhH-HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 011316 262 ALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE 340 (488)
Q Consensus 262 a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~ 340 (488)
++.++..++......+. ..--......+..++.+. +..++......+.|+.....+....++....++.+..+-.-..
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 66666655554443333 222346788899999999 9999999999999976666676677777777777766655544
Q ss_pred hhHHHHHHHHHHHh
Q 011316 341 FEIKKEAAWAISNA 354 (488)
Q Consensus 341 ~~v~~~a~~aL~~l 354 (488)
...++.+..+|...
T Consensus 726 a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 726 APKREDAAPCLSAA 739 (748)
T ss_pred hhhhhhhhhHHHHH
Confidence 45555555555444
No 168
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=97.07 E-value=0.043 Score=48.26 Aligned_cols=187 Identities=12% Similarity=0.154 Sum_probs=119.3
Q ss_pred CChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHh-------cCCCC--c---chHhHHHHHHhHhhcCCchhhH
Q 011316 212 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------L~~~~--~---~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
.+++.++.|+.-|+.--+..++....+... |.+..|++= +..+. + .-...|+..+..++. .++.+.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 357778888887777666555555545544 555555433 22221 1 122245555555666 566777
Q ss_pred HHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011316 279 CIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 353 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~ 353 (488)
.+++.++.-.+..+|+.. .-+.+|..+.++++.+.. ++++.+..+.+.+++|..++.++.++.-.|..|...+..
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888989888888888543 246788999999999998 567888889999999999999999988888999999999
Q ss_pred hccCCCHHHHHHHHHC--------CChHHHH-hhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 354 ATSGGSNEQIKFLVSQ--------GCIKPLC-DLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 354 l~~~~~~~~~~~l~~~--------~~~~~L~-~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
+.... ....++.+. .++..++ .+.+++++.+.++++.+..++....
T Consensus 166 IL~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 166 ILLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 88643 333333221 1222222 2344667777777777776665443
No 169
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.06 E-value=0.0077 Score=61.23 Aligned_cols=189 Identities=17% Similarity=0.162 Sum_probs=128.0
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCC---------CCCh----hhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011316 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---------QPLF----EQTRPALPALERLIHSNDDEVLTDACWALSY 226 (488)
Q Consensus 160 i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~---------~~~~----~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~ 226 (488)
...++..| +++++-..+..++.-+..+.+ .... .....++|.+++.+.+.....+..-+.+|.+
T Consensus 817 a~klld~L---s~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 817 AEKLLDLL---SGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHhc---CCccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 34556666 234444555566655544331 1111 2236788899998887777888888888888
Q ss_pred hccCCchhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccch--hhHH
Q 011316 227 LSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK--KSIK 302 (488)
Q Consensus 227 l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~--~~v~ 302 (488)
+..+-+.. .+.. ..++|.|++.|.-++..+|..++.++..+....+.....-++ .+++.++.+=.+..+ ..+|
T Consensus 894 Vl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 894 VLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence 88766542 2222 267888999999999999999999999888766554433322 466677666665522 6789
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011316 303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 354 (488)
Q Consensus 303 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 354 (488)
..|..++..+.+.-|...-......++..|...|.++..-||++|..+=.+.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 9999999999983233222333445888899999998888999998765544
No 170
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.06 E-value=0.064 Score=49.73 Aligned_cols=171 Identities=16% Similarity=0.116 Sum_probs=111.3
Q ss_pred CCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chh
Q 011316 73 GVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKC 150 (488)
Q Consensus 73 ~~i~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~ 150 (488)
+.+..|+ ..+++++ +.+|..|+.||+-.+--+.+..... ++.+...++.++..++..|+.++..+.... ...
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKEH-----LPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 3444444 6678888 8999999999999988665444433 677788787789999999999999886321 111
Q ss_pred HHHH-------HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc----CChhHHHH
Q 011316 151 RDLV-------LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----NDDEVLTD 219 (488)
Q Consensus 151 ~~~~-------~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~----~~~~v~~~ 219 (488)
.+.. .....+..+.+.+ .+.+++++..++..++.|.-...... ...++..|+-+.-+ ++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1111 1123455666666 66688999999999999887652222 23344444433322 34667777
Q ss_pred HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011316 220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 254 (488)
Q Consensus 220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 254 (488)
....+-..+...... +..+...+++.+..+....
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 766777777666655 4455556777777766553
No 171
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.04 E-value=0.18 Score=46.74 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=114.4
Q ss_pred hchHHHHH-HhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-
Q 011316 199 RPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ- 276 (488)
Q Consensus 199 ~~~~~~L~-~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~- 276 (488)
.+.+..++ +.+++.+..++..++.+++-.+--+.+... ..++.+...+..+++.++..|+.++..+....+..
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 35555444 788999999999999999998866543333 34667777776678899999999999887643211
Q ss_pred hHH-------HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC----ChhHHH
Q 011316 277 TQC-------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA----EFEIKK 345 (488)
Q Consensus 277 ~~~-------~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~----~~~v~~ 345 (488)
... .....+.+.+.+.+.+. +++++..|+..++.+...+.-.- ...++..|+-..-++ +..+|+
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 111 11235778888899888 88999999999998876311100 112455555555443 456777
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011316 346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 382 (488)
Q Consensus 346 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~ 382 (488)
.-...+-..+... ++. +.......++.+..+.+.+
T Consensus 175 ~L~~Ffp~y~~s~-~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 175 CLSVFFPVYASSS-PEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHcCC-HHH-HHHHHHHHHHHHHHHHhCc
Confidence 6666677776643 333 3444557777777777643
No 172
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=0.028 Score=56.95 Aligned_cols=225 Identities=12% Similarity=0.142 Sum_probs=144.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011316 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198 (488)
Q Consensus 119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 198 (488)
...+..+.++...++..++..|..+.+... ....+...+++...+..+ ++.|+-+.-+|...+..||.-. .
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy-------~ 800 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVY-------P 800 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhc-------c
Confidence 334445556778889999999999987543 345566677888888899 8888888889999888888753 2
Q ss_pred hchHHHHHHhhcc-C---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011316 199 RPALPALERLIHS-N---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274 (488)
Q Consensus 199 ~~~~~~L~~ll~~-~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 274 (488)
..++|.+.+.-.+ . ..+.+-.+-.++.++...-.+....... -++..++...++++...|..++..++++|....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 4567777764332 1 1234444456666666544443333333 566778888888888889999999999997554
Q ss_pred hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH---HcCChHHHHHHHhcC-ChhHHHHHHHH
Q 011316 275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII---EAGIIGPLVNLLLNA-EFEIKKEAAWA 350 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---~~~~l~~L~~ll~~~-~~~v~~~a~~a 350 (488)
......+. .++..++.+.+.+.+..+|+.|+..+..+..+.....-.+. ..+....+....... +..++..|..+
T Consensus 880 ~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~ 958 (982)
T KOG4653|consen 880 FQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC 958 (982)
T ss_pred hhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 33332222 35566667776665889999999999999875333222222 112333344444333 44455555555
Q ss_pred HHHh
Q 011316 351 ISNA 354 (488)
Q Consensus 351 L~~l 354 (488)
+-.+
T Consensus 959 leei 962 (982)
T KOG4653|consen 959 LEEI 962 (982)
T ss_pred HHHH
Confidence 5444
No 173
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.95 E-value=0.0052 Score=45.74 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=57.4
Q ss_pred hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh--cccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011316 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325 (488)
Q Consensus 258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 325 (488)
.+...+.+|+|++..++.....+.+.++++.++..- +.. +|-+|+.|.+++.|++.+++++...+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~-nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDH-NPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 466789999999999999989999999999998865 334 8999999999999999998988776654
No 174
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.94 E-value=0.029 Score=58.89 Aligned_cols=147 Identities=19% Similarity=0.186 Sum_probs=117.4
Q ss_pred hhhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhh
Q 011316 196 EQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIV 270 (488)
Q Consensus 196 ~~~~~~~~~L~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~ 270 (488)
.....+.|.+++..++ .++.++..|.-+|+.+..-+... .+ .-++.|+..+. +++|.+|.++.-+++.++
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ce-s~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HH-HHHHHHHHHHhcCCCceeeecchheccchh
Confidence 3446678888888854 57999999999999987655433 22 55788999987 689999999999999999
Q ss_pred cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 011316 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 350 (488)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~a 350 (488)
...+.... .+-+.+...|++. ++.+|+.|..++++|...+- +--.|.++.+..++.+++..++.-|-..
T Consensus 990 v~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~F 1058 (1251)
T KOG0414|consen 990 VRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSF 1058 (1251)
T ss_pred hhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHH
Confidence 87775543 4567889999999 99999999999999987522 1236889999999999999999988877
Q ss_pred HHHhccCC
Q 011316 351 ISNATSGG 358 (488)
Q Consensus 351 L~~l~~~~ 358 (488)
...++..+
T Consensus 1059 F~Els~k~ 1066 (1251)
T KOG0414|consen 1059 FKELSSKG 1066 (1251)
T ss_pred HHHhhhcc
Confidence 77777655
No 175
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.13 Score=51.28 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=81.0
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011316 197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 197 ~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
...+.+..+++...+++..|+..++..|..+.......-+.+. .++...+..-+.+..|.||..|+.+|+.+=......
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 5567777788888889999999999999999875443323333 367777888888888999999999999986422111
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~ 310 (488)
+..+...+..++++.++++||+.|+..+.
T Consensus 161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 23467778888888779999998775554
No 176
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.039 Score=52.46 Aligned_cols=150 Identities=13% Similarity=0.161 Sum_probs=96.3
Q ss_pred HHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhccCCCHHH-HHHHH
Q 011316 290 LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQ-IKFLV 367 (488)
Q Consensus 290 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~ 367 (488)
..-..++ +..+|..|+..|+|.+.+.|+........ .+..++.-| ...+.+|..++..+|..+........ ..++.
T Consensus 264 a~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l 341 (533)
T KOG2032|consen 264 ANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL 341 (533)
T ss_pred HHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch
Confidence 3333556 77899999999999999755544443332 455555544 44478999999999998876443222 22332
Q ss_pred HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh--hccHHHHHHhhcCCCHHHHHHHH
Q 011316 368 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD--AEGLEKIENLQSHDNTEIYEKAV 445 (488)
Q Consensus 368 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~l~~l~~~~~~~v~~~a~ 445 (488)
++.-.+..++++.+++++..+...++.+........ ...|.+ .+....+.--+.++++.+..+..
T Consensus 342 --~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~-----------e~~Fte~v~k~~~~lllhl~d~~p~va~ACr 408 (533)
T KOG2032|consen 342 --NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGW-----------EEFFTEQVKKRLAPLLLHLQDPNPYVARACR 408 (533)
T ss_pred --hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCc-----------hhhhHHHHHhccccceeeeCCCChHHHHHHH
Confidence 356667778889999999999999998887655332 233321 22223333335677888777766
Q ss_pred HHHHHhcCC
Q 011316 446 KILETYWVE 454 (488)
Q Consensus 446 ~~l~~~~~~ 454 (488)
..+..+++.
T Consensus 409 ~~~~~c~p~ 417 (533)
T KOG2032|consen 409 SELRTCYPN 417 (533)
T ss_pred HHHHhcCch
Confidence 666655543
No 177
>PRK14707 hypothetical protein; Provisional
Probab=96.86 E-value=0.79 Score=51.77 Aligned_cols=420 Identities=15% Similarity=0.109 Sum_probs=220.4
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCCCchh
Q 011316 32 LPAMVAGVW--SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 32 i~~l~~~L~--s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+..+++..+ .++.+.+..+...... ++.+ ....+.+ ..-.|-.+++.+.. +++++.+..+...-..++. .+..
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~-~~~~-d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l 240 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAAL-VASD-DRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL 240 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHH-hcCC-hhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence 444555554 3555555544444444 4333 2333333 23344455555543 4445666555554455555 5555
Q ss_pred hHHHHhCCCHHHHHHhhCC-CC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH-H
Q 011316 109 TRVVIDHGAVPIFVRLLSS-PT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-N 185 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~-~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~-~ 185 (488)
+..+-..| +-..++.|.. ++ +..+..+..+-..++ +.+..++.+-. ..+...++-|.+-.+..+-..+...|. .
T Consensus 241 ~~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~r 317 (2710)
T PRK14707 241 RNELKPQE-LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDP-INVTQALNALSKWADLPVCAEAAIALAER 317 (2710)
T ss_pred HHhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence 66555445 4445555544 44 455555555555555 33444444322 223444555546667777666555554 4
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHH
Q 011316 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALR 264 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~ 264 (488)
|..+.......-..++-..|..+-+-++..+...+...|..=...++...+. ++...+...++.+.. ++..+-..+..
T Consensus 318 l~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~-l~~q~~a~~lNalsKWp~~~~c~~aa~ 396 (2710)
T PRK14707 318 LADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKD-LEPQGVSSVLNALSKWPDTPVCAAAAS 396 (2710)
T ss_pred HhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcc-cchhHHHHHHhhhhcCCCchHHHHHHH
Confidence 5443322222222333334444444566666666666555433334333332 233445666666654 55555555555
Q ss_pred HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
.|..-.....+..+.+ +...+.-.+.-|..-.+..+...++..|.--..++.+.++.+--.++...|-.+-+-+|..+.
T Consensus 397 ~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c 475 (2710)
T PRK14707 397 ALAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPIC 475 (2710)
T ss_pred HHHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhH
Confidence 6555555455555444 444455555555443377777777777776666667766655444555555555556787888
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH-HHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011316 345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL-EGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al-~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (488)
..++..|..-... +++..+.+.-.++...|-.+-+.++......++ ++-..+. .... ....|...
T Consensus 476 ~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~-~~~~------------l~~~~~~~ 541 (2710)
T PRK14707 476 GQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV-DELQ------------LRKAFDAH 541 (2710)
T ss_pred HHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc-cchh------------hhhhhhhH
Confidence 7777777665543 345566665556666776676777755433333 2233332 1111 24445555
Q ss_pred ccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 011316 424 EGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGF 485 (488)
Q Consensus 424 g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (488)
+....+..|.+.++...-..+..-|...+.. .++..=.|++|+++.--|.|
T Consensus 542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~-----------~~~~~~~L~aq~Vs~llNaL 592 (2710)
T PRK14707 542 QVVNTLKALSKWPDKQLCAVAASGLAERLAD-----------EPQLPKDLHRQGVVIVLNAL 592 (2710)
T ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHhhc-----------chhhHHhhhhhHHHHHHHhh
Confidence 5566677777777666655555555544321 12333456777766554444
No 178
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.80 E-value=0.0059 Score=46.72 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=57.2
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 011316 371 CIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 449 (488)
++..|+++|. +.|+.+...|+.=|+.++..-+.. +..+.+.|+-+.+.+|++++|++|+..|..+++
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4778888884 457778888999999999886643 777899999999999999999999999999998
Q ss_pred Hhc
Q 011316 450 TYW 452 (488)
Q Consensus 450 ~~~ 452 (488)
++.
T Consensus 112 klm 114 (119)
T PF11698_consen 112 KLM 114 (119)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 179
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.71 E-value=0.6 Score=46.42 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=109.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
....++..-+ +++..+..|+..+.+....- ++.. ..++..++.++.+.+ ..||..|++.|-.+|.++++...
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~F-P~l~-----~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHF-PDLQ-----EEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGH-----HHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhH-----HHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHHh
Confidence 3445555555 56888999999999988764 3332 246789999999999 89999999999999998888877
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--ccccHhHHHHHHHHHHHhhc
Q 011316 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~v~~~a~~~L~~l~~ 188 (488)
.+ ...|+++|.++++.-...+-.+|..+...++. +.+..++..+. ..+++.+++.++..|..=..
T Consensus 96 kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 96 KV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLK 162 (556)
T ss_dssp HH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGG
T ss_pred HH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHh
Confidence 66 58999999998877777777777777654443 24556666663 25677899999887754333
Q ss_pred CC--CCCC--hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316 189 GK--PQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 189 ~~--~~~~--~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
.- .... .....-++..+.+.|.+-...=-...+.+|..+-.
T Consensus 163 ~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 163 PLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp GS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred hCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 22 1111 23344555666666655333333444455555544
No 180
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.70 E-value=0.75 Score=45.64 Aligned_cols=254 Identities=13% Similarity=0.075 Sum_probs=141.3
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH
Q 011316 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 121 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 121 (488)
...+.|..+...|..++.... .... ..+. .+.+.+..+..++.-..-+.+|..|+.+..+. ...+.++.+.|
T Consensus 41 ~p~e~R~~~~~ll~~~i~~~~-~~~~-~~R~----~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L 112 (464)
T PF11864_consen 41 QPSEARRAALELLIACIKRQD-SSSG-LMRA----EFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFL 112 (464)
T ss_pred CCHHHHHHHHHHHHHHHHccc-cccH-HHHH----HHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHH
Confidence 346788899999998887652 2111 1121 22333343322333334455566666533333 22567778888
Q ss_pred HHhhCCC---------------------------CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHh
Q 011316 122 VRLLSSP---------------------------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 174 (488)
Q Consensus 122 ~~lL~~~---------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~ 174 (488)
..++..- +.......+..+.|+...+...-+.-.-.+.+..++.+..+..++.
T Consensus 113 ~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~ 192 (464)
T PF11864_consen 113 LSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSED 192 (464)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHH
Confidence 8777420 2223334555566665544322221112234555555654555555
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-
Q 011316 175 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH- 253 (488)
Q Consensus 175 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~- 253 (488)
....++..+-.+.... .........++..|....... +....+-.++.||+...... ..+..|..+|.+
T Consensus 193 di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~ 262 (464)
T PF11864_consen 193 DIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSP 262 (464)
T ss_pred HHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHccc
Confidence 5667777776665543 222233344555555553322 66677788888888654322 345667777732
Q ss_pred -----CCcchHhHHHHHHhHhhcCCchhhHHHhhC---CChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 254 -----PSPSVLIPALRTVGNIVTGDDMQTQCIINH---QALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 254 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
.+..+.+-|+..+..+..+..+....-+.. -+++.+...++.+ ++.+-.+....+.++..
T Consensus 263 ~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 263 DPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD 330 (464)
T ss_pred CccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence 234566788888888887663332222221 2677888888877 77777777777777773
No 181
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.63 E-value=0.96 Score=47.34 Aligned_cols=210 Identities=14% Similarity=0.179 Sum_probs=126.8
Q ss_pred hCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---cccc----HhHHHHHHH
Q 011316 114 DHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNATW 181 (488)
Q Consensus 114 ~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~----~~v~~~a~~ 181 (488)
+.|++..++..+.+ ...++....+..|...+.- +.+|+.+++.++++.|+..+. .... ..+.+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 56889999998876 3345666666766666654 567899999999999998874 2222 456666666
Q ss_pred HHHHhhcCCCCCCh--------h-----hhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCH
Q 011316 182 TLSNFCRGKPQPLF--------E-----QTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 244 (488)
Q Consensus 182 ~L~~l~~~~~~~~~--------~-----~~~~~~~~L~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l 244 (488)
++-.+......... . ....-+..+++.+.+ .++.+....+++|-+++.+..+.++.+++. +
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F 271 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F 271 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence 66555433211100 0 123345566666654 368999999999999999988887766642 2
Q ss_pred HHHHHh--cCCCCcchHhHHHHHHhHhhcCC------chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011316 245 PRLVEL--LRHPSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 316 (488)
Q Consensus 245 ~~L~~l--L~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 316 (488)
...+++ ++.....--..-+.+++.++.+- ...+..+++.|++...+..|... -+.. ....
T Consensus 272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~~~~ 339 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------KNTD 339 (802)
T ss_pred HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------ccCC
Confidence 222222 11111111123355666665532 23566677888888888877655 3332 1113
Q ss_pred HHHHHHHHHcCChHHHHHHHhc
Q 011316 317 VNQIQAIIEAGIIGPLVNLLLN 338 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~ll~~ 338 (488)
.+.....++...+|..+++|..
T Consensus 340 s~eWk~~l~~psLp~iL~lL~G 361 (802)
T PF13764_consen 340 SPEWKEFLSRPSLPYILRLLRG 361 (802)
T ss_pred CHHHHHHhcCCcHHHHHHHHHH
Confidence 3445566666677777777654
No 182
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.60 E-value=0.12 Score=49.09 Aligned_cols=173 Identities=11% Similarity=0.115 Sum_probs=111.5
Q ss_pred HhHHHHHHHHH-HHhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011316 173 LSMLRNATWTL-SNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 250 (488)
Q Consensus 173 ~~v~~~a~~~L-~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 250 (488)
.+-+..|+.-| .-+|.+.-..+......++..+++.+.+ .+...+..|++.|..++.+.+.+...-.+ -.+..+++.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHH
Confidence 34455555534 4444444444555566777788888887 68889999999999999877644322111 234555555
Q ss_pred cCCCCcchHhHHHH-HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCC
Q 011316 251 LRHPSPSVLIPALR-TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGI 328 (488)
Q Consensus 251 L~~~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~ 328 (488)
-.+..+.+...|.. ++..++.+.+... +..+..++.+. +...-..++..+..+... ..+....++. .+
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-di 449 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-DI 449 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-hh
Confidence 55655555555544 4445555555332 33455555555 555666666677777763 3444444443 59
Q ss_pred hHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 329 IGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 329 l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.|.+++...+.+..||+.|..+|..+..
T Consensus 450 aP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 450 APCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 9999999999999999999999998864
No 183
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.032 Score=58.51 Aligned_cols=161 Identities=20% Similarity=0.240 Sum_probs=123.9
Q ss_pred CCHHHHHHhhcCC---CChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCc
Q 011316 73 GVVPRFIEFLSRD---DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 73 ~~i~~L~~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~ 148 (488)
.+.|.+++.++.+ ++|++|..|.-+|+.+..-+.+.... -++.|...+. ++++.+|.++.-+++.++..-|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 3677777777432 23899999999999998866665553 3789999988 6999999999999999987666
Q ss_pred hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316 149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 149 ~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
...+. ..+.+...+ .+.++.+++.|..+|.+|..++ .+...|.++.+..++.+++..++.-|=.....++
T Consensus 994 nlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 994 NLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred cccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 53222 345677777 8889999999999999998764 4566899999999999999999888887777777
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCC
Q 011316 229 DGTNDKIQAVIEAGVCPRLVELLRHP 254 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~ 254 (488)
.... . +. +++|-++..|.+.
T Consensus 1064 ~k~n-~---iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1064 SKGN-T---IY--NLLPDILSRLSNG 1083 (1251)
T ss_pred hccc-c---hh--hhchHHHHhhccC
Confidence 5542 1 22 5667776666664
No 184
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.58 E-value=0.19 Score=44.37 Aligned_cols=196 Identities=13% Similarity=0.048 Sum_probs=117.9
Q ss_pred CcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHHHHHHh-------cccc-hhh--HH-HHHHHHHHHHhcCCHHHHHH
Q 011316 255 SPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLL-------TQNY-KKS--IK-KEACWTISNITAGNVNQIQA 322 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL-------~~~~-~~~--v~-~~a~~~L~nl~~~~~~~~~~ 322 (488)
+++.|+.|+.-|+.--...+...-.+.. .|.+..+++=+ ..+. ... -| ..|...+..+++ +++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 4556777766666544433433333332 34444444322 1110 111 12 233334445555 4888889
Q ss_pred HHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011316 323 IIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 323 l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l 397 (488)
+++..+.-.|..+++.. -+.+|..++.+++.++...+++...++.+.+.++...+.++.+++-.+..|..++.++
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 99988877777777654 3568999999999999999999999999999999999999999888888899999999
Q ss_pred HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011316 398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
+..+.....-.+. ..+|.....-. -.-+..+...+++++-+...++..++.+..
T Consensus 167 L~dd~GL~yiC~t--~eRf~av~~vL--~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 167 LLDDVGLNYICQT--AERFFAVAMVL--NKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHSHHHHHHHTSS--HHHHHHHHHHH--HHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HcchhHHHHHhcC--HHHHHHHHHHH--HHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 8765543322111 11122222111 122344567788888777777766665543
No 185
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.57 E-value=0.0055 Score=46.88 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=61.2
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.++..|+.+|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.++|++|+.+|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4678899999655488888899999999999768877777788999999999999999999999999988764
No 186
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.53 E-value=0.19 Score=43.49 Aligned_cols=139 Identities=14% Similarity=0.089 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhh
Q 011316 304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 378 (488)
Q Consensus 304 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l 378 (488)
.|...+..++++ ++.+..+++..+--.+..+|... .+.+|..++.+++.+...++.+...++...++++...+.
T Consensus 98 naL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 98 NALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 444444455545 78888888877766777777643 567999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc----H-HHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316 379 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG----L-EKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 379 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~-~~l~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
++.+.+.-+..|..++.+++..+.-... .+...++--. + +-+..+.+.+++++-..+.++.-++-
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~Y---------iCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYY---------ICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS 246 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHH---------HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 9999998888999999988765543321 1222222111 1 12333456667776666665555543
No 187
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.47 E-value=0.019 Score=47.40 Aligned_cols=147 Identities=18% Similarity=0.145 Sum_probs=97.1
Q ss_pred ChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011316 285 ALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363 (488)
Q Consensus 285 ~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 363 (488)
-++.++..|.. +..+.+|..+.-++..+.. ...+. ....+-+.+-..+..++.+-...+..++..+... .++..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLD---AAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHH---HhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHH
Confidence 34556665554 3377899999999998852 11122 2222334444455555566778889999998765 45555
Q ss_pred HHH-HHCCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHH
Q 011316 364 KFL-VSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTE 439 (488)
Q Consensus 364 ~~l-~~~~~~~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~ 439 (488)
..+ ...|.++.+..+.. .++..+...++++|..-+.... ++.+....+++.|.++. +++++.
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~--------------~r~~I~~~~~~~L~~~~~~~~~~~ 144 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS--------------CRTFISKNYVSWLKELYKNSKDDS 144 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH--------------HHHCCHHHCHHHHHHHTTTCC-HH
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH--------------HHHHHHHHHHHHHHHHHccccchH
Confidence 554 46688999998888 7788888888888875544333 44455566789999998 566666
Q ss_pred -HHHHHHHHHHH
Q 011316 440 -IYEKAVKILET 450 (488)
Q Consensus 440 -v~~~a~~~l~~ 450 (488)
++.+|.-.|.+
T Consensus 145 ~ir~~A~v~L~K 156 (157)
T PF11701_consen 145 EIRVLAAVGLCK 156 (157)
T ss_dssp -CHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 78888877765
No 188
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.37 E-value=0.17 Score=50.60 Aligned_cols=257 Identities=13% Similarity=0.153 Sum_probs=165.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316 35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
++..+.-.+.+.+..-..-|.+.+.. ....++...+++.|+..+.-++. .++.. .+..++.... ..+ .
T Consensus 259 fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~lt-pl~k~~k~ld-~~e-----y 327 (690)
T KOG1243|consen 259 FLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLT-PLFKLGKDLD-EEE-----Y 327 (690)
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhh-HHHHhhhhcc-ccc-----c
Confidence 34444556666665555555553332 23445566677777777665541 22222 2222333333 222 5
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011316 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193 (488)
Q Consensus 114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~ 193 (488)
+.++++.++++++..+..+|-..+.-+-.+..+ ..+.+++..+++.+...+ .++++.++..++.++..++..-...
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh
Confidence 668899999999999999998766666665543 445566777788888888 8899999999999998887643111
Q ss_pred ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316 194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 194 ~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 273 (488)
......+..+..+-.+.+..++....-|++.++...... ..+.-....+...++++-..-|..+...+.......
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~ 478 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYF 478 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhccccc
Confidence 233445555555555667888888888888887664322 122223345555677777778888888877665543
Q ss_pred chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011316 274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 315 (488)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 315 (488)
+. .-+...+++.+..+.-++ +..+|..|..++..+-..
T Consensus 479 ~~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 479 DQ---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred ch---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHhh
Confidence 32 223457888888888888 888888888888766543
No 189
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=96.37 E-value=0.3 Score=46.55 Aligned_cols=275 Identities=18% Similarity=0.159 Sum_probs=141.3
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHH-HHHHhhhhCCCchhHH
Q 011316 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA-VWALGNVAGDSPKCRD 152 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a-~~~L~~l~~~~~~~~~ 152 (488)
+..++.-+.++....+|..++--|+.-+. +++++..+...|..+.+.+.+.. ++..+...+ +.++.-++.+.. ...
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 56677777755547889898888888888 89999999999999999999955 333244444 444444444443 233
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHH
Q 011316 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---------SNDDEVLTDACWA 223 (488)
Q Consensus 153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~---------~~~~~v~~~al~~ 223 (488)
.+.+......+++++.-....++..... ..............+..+.+.+. .....-+..++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~-------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD-------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh-------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 3334444555566663000000000000 00000000000111111111110 1112223334444
Q ss_pred HHHhc--------------cCCchhHHHHHHhCCHHHHHHhcC----CC-------C-----cchHhHHHHHHhHhhcCC
Q 011316 224 LSYLS--------------DGTNDKIQAVIEAGVCPRLVELLR----HP-------S-----PSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 224 L~~l~--------------~~~~~~~~~~~~~~~l~~L~~lL~----~~-------~-----~~v~~~a~~~L~~l~~~~ 273 (488)
+-.++ ...+...+.+.+.|+++.++..+. .. . ......++++|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 44332 111223344566677888888764 11 1 124456788888888776
Q ss_pred chhhHHHhh--CCChHHHHH-Hhccc--chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------c----
Q 011316 274 DMQTQCIIN--HQALPCLLD-LLTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------N---- 338 (488)
Q Consensus 274 ~~~~~~~~~--~~~~~~L~~-lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~------~---- 338 (488)
......... .+.+..+.. .+... ....+...+++.+.|++.++++....+...++...+..+.. .
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 665555543 223333322 22222 03344567888999999888776666655433222211111 1
Q ss_pred ----CChhHHHHHHHHHHHhccCC
Q 011316 339 ----AEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 339 ----~~~~v~~~a~~aL~~l~~~~ 358 (488)
...+...-++.+|.|++...
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEHS 357 (361)
T ss_pred ccccccchHHHHHHHhHHHheeeC
Confidence 12356677788888887654
No 190
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.35 E-value=0.28 Score=49.12 Aligned_cols=194 Identities=12% Similarity=0.141 Sum_probs=135.9
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011316 197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 197 ~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
+..+++|.++++++..|..+|...+.-+-.....-. +.+++..+++.+...+.+.++.+|+.++.++..++..-...
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 567899999999999999999988877777665433 44777789999999999999999999999998887632211
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.+....+..+-+.-. .++..+|....-+++.++....... .+.-...+..+.+.++-..-|..+.+++.....
T Consensus 404 ---~Ln~Ellr~~ar~q~-d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQP-DEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred ---hhcHHHHHHHHhhCc-cccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 223333444444333 3377888888888888876422211 122234455566777766778888888877654
Q ss_pred CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011316 357 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 404 (488)
.-+... +...+++.+.-+.-+++..++..+..++.......++.
T Consensus 477 ~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~ 520 (690)
T KOG1243|consen 477 YFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV 520 (690)
T ss_pred ccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence 332211 23357888888888888899999999888887665554
No 191
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.28 E-value=2.4 Score=46.60 Aligned_cols=143 Identities=12% Similarity=0.095 Sum_probs=99.4
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (488)
+.+..++..|..+. ..+|..|++||..+...+|.... ...+-..+..-+.+....+|+.|+..++......++...
T Consensus 816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 45677777888777 89999999999999986665432 112234444455567899999999999988766554322
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhcc
Q 011316 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~ 229 (488)
. .-..+...+ .++...||..++..+.-+|...|.-. .....+.++++ ++...++.-+..++.++.-
T Consensus 892 q-----yY~~i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~-----~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 892 Q-----YYDQIIERI-LDTGVSVRKRVIKILRDICEETPDFS-----KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred H-----HHHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCChh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 2 233455555 56778999999999999998764332 23344455554 4455589999999988874
Q ss_pred C
Q 011316 230 G 230 (488)
Q Consensus 230 ~ 230 (488)
.
T Consensus 961 ~ 961 (1692)
T KOG1020|consen 961 T 961 (1692)
T ss_pred c
Confidence 3
No 192
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=96.23 E-value=0.66 Score=41.87 Aligned_cols=213 Identities=10% Similarity=0.110 Sum_probs=145.2
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH----HHHH-HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI----QAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~----~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 273 (488)
.+.++.++..+...+-+.+..++.+..++....-+.. +.+. ...++..|+..-.. .+++...+-..+....+ .
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcir-h 155 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIR-H 155 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHh-h
Confidence 5778888888888888888888888888775432211 1111 12344445444111 24444444444444444 3
Q ss_pred chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHH-HHHHHhcCChhHHHHHHH
Q 011316 274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGP-LVNLLLNAEFEIKKEAAW 349 (488)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~-L~~ll~~~~~~v~~~a~~ 349 (488)
+...+.++...-+......++.+ ..++...|..+...+..........++..+ +++. --.++.+++.-.+..+..
T Consensus 156 e~LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~k 234 (342)
T KOG1566|consen 156 EFLAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLK 234 (342)
T ss_pred HHHHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHH
Confidence 45666777888888899999988 888999999999888775455555555433 2343 556777889999999999
Q ss_pred HHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011316 350 AISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423 (488)
Q Consensus 350 aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (488)
+|+.+.... .....+++.+...+..++.+|.++...++..|......+.....+.+ ++...+...
T Consensus 235 llg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q---------~V~~IL~~N 301 (342)
T KOG1566|consen 235 LLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQ---------PVRDILVRN 301 (342)
T ss_pred hHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCc---------hHHHHHHhC
Confidence 999997644 33456777666789999999999999999999888877765554433 256666544
No 193
>PRK14707 hypothetical protein; Provisional
Probab=96.23 E-value=3.1 Score=47.43 Aligned_cols=401 Identities=12% Similarity=0.069 Sum_probs=202.1
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.++...++.+.. ++...-..++..|..-+..+ .+....+-..|+-..|-.+-+=++ ..+-..++..|..-...+.+.
T Consensus 373 q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d-~~l~~~~~~Q~van~lnalsKWPd-~~~C~~aa~~lA~~la~d~~l 450 (2710)
T PRK14707 373 QGVSSVLNALSKWPDTPVCAAAASALAEHVVDD-LELRKGLDPQGVSNALNALAKWPD-LPICGQAVSALAGRLAHDTEL 450 (2710)
T ss_pred hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccC-hhhhhhcchhhHHHHHHHhhcCCc-chhHHHHHHHHHHHHhccHHH
Confidence 567777888875 55566666667777666544 444554444444444433334455 566666666666655557787
Q ss_pred hHHHHhCCCHHHHHHhhCC-CCHH-HHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccH-hHHHHHHHHHHH
Q 011316 109 TRVVIDHGAVPIFVRLLSS-PTDD-VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL-SMLRNATWTLSN 185 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~-~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~-~v~~~a~~~L~~ 185 (488)
++.+--.+ +...+..++. ++.. .++.+-.....|+.+ +..++.+--.++.. -+.-|.+-.+. .-...+.|.-..
T Consensus 451 ~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~-~~l~~a~~~q~~~~-~L~aLSK~Pd~~~c~~A~~~lA~r 527 (2710)
T PRK14707 451 CKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHE-RRLRKALKPQEVVI-ALHSLSKWPDTPICAEAASALAER 527 (2710)
T ss_pred HhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhccc-HHHHhhcCHHHHHH-HHHHhhcCCCcHHHHHHHHHHHHH
Confidence 77765555 4444444544 4444 444444444555543 33444433322222 23333344443 334455555555
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CC-cchHhHHH
Q 011316 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPAL 263 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~-~~v~~~a~ 263 (488)
+.........+....+...+..+-+.++......+...|.......+.. ..-++.--+..+++.|+. ++ +..+..+.
T Consensus 528 l~~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~-~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~ 606 (2710)
T PRK14707 528 VVDELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQL-PKDLHRQGVVIVLNALSKWPDTAVCAEAVN 606 (2710)
T ss_pred hccchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhh-HHhhhhhHHHHHHHhhccCCCcHHHHHHHH
Confidence 5544322222233344444444445566666666666666554433333 223444456667777755 44 34444444
Q ss_pred HHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChh
Q 011316 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-AEFE 342 (488)
Q Consensus 264 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~ 342 (488)
++-+.+.. .+..... ++..-+..++.-|+.-.+......+...|..-..........+- ..-+..++.-+.. ++.+
T Consensus 607 ~LA~~l~~-~~~lr~~-l~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fn-aQ~vAn~LNALSKWPe~e 683 (2710)
T PRK14707 607 ALAERLVD-EPDLRKE-LDPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFN-SLDVANALNALSKWPDTP 683 (2710)
T ss_pred HHHHHhcc-Chhhhhh-ccHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcc-hHHHHHHHHhhhcCCCch
Confidence 44444443 3333222 23333444444443322445555555555443322233332222 2234444444443 5777
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh
Q 011316 343 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD 422 (488)
Q Consensus 343 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 422 (488)
....|+..|...... ++.....+-.+++-..|-.+-+.++......+...|..-+...+. ....|..
T Consensus 684 ~Cr~Aa~~LA~rLa~-~~~Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~------------l~~a~~a 750 (2710)
T PRK14707 684 VCAAAAGGMAERLAA-DPGLRKELNPVDVANALNALSKWPRTPVCAAVASALAARVVAEPR------------LRKAFDA 750 (2710)
T ss_pred HHHHHHHHHHHHHhc-ChhhHhhcCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhcChh------------hhhhcCH
Confidence 777888877655443 345555554444444444455567766665655555444432221 2344555
Q ss_pred hccHHHHHHhhcCCCHHHHHHHHHHH-HHhc
Q 011316 423 AEGLEKIENLQSHDNTEIYEKAVKIL-ETYW 452 (488)
Q Consensus 423 ~g~~~~l~~l~~~~~~~v~~~a~~~l-~~~~ 452 (488)
.+.-..|..|..=++.+.-.+|...+ +++.
T Consensus 751 QevANaLNALSKWPd~~~C~~AA~aLA~rLa 781 (2710)
T PRK14707 751 QQVATALNALSKWPDNQACAAAANTLAERQL 781 (2710)
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHh
Confidence 55566677776666555444444444 4444
No 194
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.16 E-value=0.23 Score=51.81 Aligned_cols=190 Identities=15% Similarity=0.134 Sum_probs=129.2
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHH
Q 011316 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQC 279 (488)
Q Consensus 201 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 279 (488)
+-+.+-.-+.+.++.-+..++..+............ ....+.+..++... .+.+-.+...++.+|..++.........
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 334455556678899999999988887766541111 11113444444443 4566778888999999999876655333
Q ss_pred HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC
Q 011316 280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 359 (488)
Q Consensus 280 ~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 359 (488)
. ..++++.+++-+... ...++..+..++-.++...+- ..+.+.+...+.++++..+..+...+.......+
T Consensus 333 ~-~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~ 403 (815)
T KOG1820|consen 333 Y-AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG 403 (815)
T ss_pred H-HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence 3 336788888888887 777777766666655542221 1367788889999999999998888888776543
Q ss_pred HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 360 NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 360 ~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
+.....-.-.++++.++....+.+.+||.++++++..++..
T Consensus 404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 21111112235788888888899999999999999888755
No 195
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.13 E-value=0.81 Score=39.78 Aligned_cols=139 Identities=10% Similarity=0.134 Sum_probs=99.6
Q ss_pred HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc----cchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHH
Q 011316 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----NYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLV 333 (488)
Q Consensus 259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~ 333 (488)
...++..+..++++ ++.+..+++..+.-.+..+|.. ...+-.|..+.++++.+.. ++.+.+..+...+++|..+
T Consensus 96 VcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 34566666666664 5566777787877777777743 2267789999999999998 5677788888999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC---------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 334 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---------GCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 334 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---------~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
+.+..++...|.-|...+..+.... ....++++. -+-..+.++.+.+++.+..+++.+..++...
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998654 233333221 1122333455667788888888777776543
No 196
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.09 E-value=0.3 Score=46.46 Aligned_cols=176 Identities=14% Similarity=0.182 Sum_probs=111.8
Q ss_pred CHHHHHHHHH-HHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 011316 129 TDDVREQAVW-ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207 (488)
Q Consensus 129 ~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ 207 (488)
..+-+..|+. +..-++.++-...+.... ..+..+++.+.++.+...+..|+..|..++.+.+..-.....-++..+++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 3444555555 444445444333222211 24556777786668889999999999999999866655555667777777
Q ss_pred hhccCChhHHHHHHH-HHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCCh
Q 011316 208 LIHSNDDEVLTDACW-ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 286 (488)
Q Consensus 208 ll~~~~~~v~~~al~-~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 286 (488)
.-.+.++++...|.. ++..++...+.. .+..+..++...+......++..+..++..-....-..+-..+.
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 766666655544444 444455554432 12333444444666667777778887776433222222234788
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 287 PCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 287 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
|.+++-.++. +..||+.|+++|..+..
T Consensus 451 P~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 451 PCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 8999999999 89999999999997765
No 197
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.98 E-value=0.13 Score=45.55 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011316 89 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 167 (488)
Q Consensus 89 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l 167 (488)
.....|+++|.-++--+|..+..+.....++.++.+|+. ..+.++..++.+|..+..++|.....+.+.+++..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 345668889988888899999999999999999999954 6799999999999999999999999999999999999999
Q ss_pred cc-cccHhHHHHHHHHHHHhhcCC
Q 011316 168 NE-HAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 168 ~~-~~~~~v~~~a~~~L~~l~~~~ 190 (488)
.. +.+.+++..++..|.-.....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHccc
Confidence 53 447788888888887665543
No 198
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.97 E-value=0.067 Score=44.13 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=99.9
Q ss_pred HHHHHHhcC--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH
Q 011316 244 CPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 321 (488)
Q Consensus 244 l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 321 (488)
++.++..|. ...+++|..+.-++..+.. ..+.-....+-+.+...+..+ +.+-...++.++..+--..++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence 344454444 3567899999888888842 222222333445566666666 666788888999998888788777
Q ss_pred HHH-HcCChHHHHHHHh--cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHH-HHHHHHHHHHH
Q 011316 322 AII-EAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPR-IVTVCLEGLEN 396 (488)
Q Consensus 322 ~l~-~~~~l~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~-v~~~al~~L~~ 396 (488)
.++ ..|+++.+..++. .++..++..++.+|..-+.+ ...+ ..+...+++.|.+.++. ++.. ++..|+-+|.+
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 766 5788999999999 66888999999999888763 3444 44555889999999964 4455 67777666554
No 199
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.96 E-value=0.12 Score=50.01 Aligned_cols=250 Identities=12% Similarity=0.055 Sum_probs=133.6
Q ss_pred HHHHHHhcCCCch-hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccH
Q 011316 95 AWALTNIASGTSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 173 (488)
Q Consensus 95 ~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~ 173 (488)
-..|..+....+. .....+....+..|+.++.++++.-|.....+|.++...-...|..+.. .....+.+.+......
T Consensus 111 Y~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~ 189 (409)
T PF01603_consen 111 YEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERH 189 (409)
T ss_dssp HHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccc
Confidence 4445555442211 1333445567889999999999999999999999886544444444432 3444556666444555
Q ss_pred hHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCCh-hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc
Q 011316 174 SMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDD-EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 251 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 251 (488)
.-...++..++.+..+-.. .......-....++.+.+.+.- ........++......++.....++ ..++..=
T Consensus 190 ~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~W 264 (409)
T PF01603_consen 190 NGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKHW 264 (409)
T ss_dssp STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHHS
T ss_pred cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhC
Confidence 5567788888888877532 2233334444566666665532 2345555555555555544433222 2222222
Q ss_pred CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH---cCC
Q 011316 252 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGI 328 (488)
Q Consensus 252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~ 328 (488)
-..++.-...-+.-+..+....+...-.-+...+...+-..++++ +..|-..|+....|= . ...++. ..+
T Consensus 265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~-~~~li~~~~~~i 337 (409)
T PF01603_consen 265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----Y-FLSLISQNSRVI 337 (409)
T ss_dssp -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----H-HHHHHHCTHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----H-HHHHHHhChHHH
Confidence 222333333344555555543322211112224667777778888 888888877654321 1 111221 125
Q ss_pred hHHHHHHHhc----C-ChhHHHHHHHHHHHhccC
Q 011316 329 IGPLVNLLLN----A-EFEIKKEAAWAISNATSG 357 (488)
Q Consensus 329 l~~L~~ll~~----~-~~~v~~~a~~aL~~l~~~ 357 (488)
+|.+...+.. . +..++..|..++.-+..-
T Consensus 338 ~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~ 371 (409)
T PF01603_consen 338 LPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM 371 (409)
T ss_dssp HHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6666665543 2 678999999888888764
No 200
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=2 Score=43.32 Aligned_cols=187 Identities=14% Similarity=0.095 Sum_probs=121.6
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCc----hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316 75 VPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTS----ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 149 (488)
=|.|.+-|+-.+ ..+|..|+..+.+.-- .+| +..+.+++.. ...+-.+|+++.+.+|..|...++.+...
T Consensus 176 ~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~--- 250 (1005)
T KOG1949|consen 176 KPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSK--- 250 (1005)
T ss_pred hHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHH---
Confidence 355566677788 7999999999988764 223 3344455433 67888899999999999998877776532
Q ss_pred hHHHHHh---cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011316 150 CRDLVLS---NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 226 (488)
Q Consensus 150 ~~~~~~~---~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~ 226 (488)
+...+-. ...+..++.-+..++..+|+......|..+..++ ........++|++-..+.+....|+..+...|..
T Consensus 251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ 328 (1005)
T KOG1949|consen 251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK 328 (1005)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence 1111111 1133344444445666788989988888888774 3333445677777788888889999999888887
Q ss_pred hccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 227 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 227 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
+-.... -.+.+---++.++..|..++..+.+..+..|.+.+.
T Consensus 329 ik~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 329 IKAVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred HHhhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 643321 112222234556666776666666666666655554
No 201
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.94 E-value=0.052 Score=46.47 Aligned_cols=112 Identities=17% Similarity=0.193 Sum_probs=79.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC--------CCChhHHHHHHHHHHHh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--------DDFPQLQFEAAWALTNI 101 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~--------~~~~~v~~~a~~~L~~l 101 (488)
.....+++.+.+..... ..+..|...+.+.+...++.+++.||+..|+++|.. .........+++|+..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34556788887755442 444455555555434557888889999999998752 12257889999999999
Q ss_pred cCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011316 102 ASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144 (488)
Q Consensus 102 ~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~ 144 (488)
.. +...+..++ ..+.+..+...|.+++..++..++.+|+.+|
T Consensus 144 ~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred Hc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 98 555555555 5689999999999999999999999999886
No 202
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=2.3 Score=43.20 Aligned_cols=276 Identities=14% Similarity=0.073 Sum_probs=150.7
Q ss_pred ccHHHHHHHhc-C-------CCHHHHHHHHHHHHHHhc--cCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHH
Q 011316 30 ESLPAMVAGVW-S-------DDRNIQLDATTQFRKLLS--IERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALT 99 (488)
Q Consensus 30 ~~i~~l~~~L~-s-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~ 99 (488)
|.++-+...|. + +++.....|++.+.++.+ +. .....-+.+.=+++.++..++++. --++.+||..+.
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk-~sp~an~me~fiv~hv~P~f~s~y-gfL~Srace~is 485 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITK-MSPAANVMEYFIVNHVIPAFRSNY-GFLKSRACEFIS 485 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhhHhhcCcc-cchHHHHHHHHH
Confidence 67777787773 1 334555567777777665 33 333444455555666667778887 689999999999
Q ss_pred HhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--ccccHhHHH
Q 011316 100 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLR 177 (488)
Q Consensus 100 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~v~~ 177 (488)
.+..+-+ +...-..+.+....++.+.+-.++-.|+-++.-+..+.. ....+. ..+.+.+-++|. +.-+.++..
T Consensus 486 ~~eeDfk---d~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~h~k~s-ahVp~tmekLLsLSn~feiD~LS 560 (970)
T COG5656 486 TIEEDFK---DNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-SHEKFS-AHVPETMEKLLSLSNTFEIDPLS 560 (970)
T ss_pred HHHHhcc---cchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-hhHHHH-hhhhHHHHHHHHhcccccchHHH
Confidence 9954322 222223456677778888888888888888888876653 333332 222222222321 333444444
Q ss_pred HHHHHHH-HhhcCCCCCChhhhhchHH----HHHHhhccCC------hhHHHHHHHHHHHhcc---CCchh--HHHHHHh
Q 011316 178 NATWTLS-NFCRGKPQPLFEQTRPALP----ALERLIHSND------DEVLTDACWALSYLSD---GTNDK--IQAVIEA 241 (488)
Q Consensus 178 ~a~~~L~-~l~~~~~~~~~~~~~~~~~----~L~~ll~~~~------~~v~~~al~~L~~l~~---~~~~~--~~~~~~~ 241 (488)
.+...+. .++..-..-........+. ....++.+++ .+-+..|...|..+.. .-++. .-.-...
T Consensus 561 ~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~ 640 (970)
T COG5656 561 MVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV 640 (970)
T ss_pred HHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 4443333 2222211111122222333 3333333321 1223344444443321 11111 1112223
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
...|.+--.|++.-.+.-..|+.++-+.+....+.. -+.-|+.+.+.+++.+......-.+++-++.|+..
T Consensus 641 slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit 711 (970)
T COG5656 641 SLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFIT 711 (970)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 455555556677777788888888877765433222 12336777788888777333566788888999876
No 203
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=95.91 E-value=0.2 Score=52.17 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=134.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhh
Q 011316 120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR 199 (488)
Q Consensus 120 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 199 (488)
.+..-+.+.+..-|..++..+........ .....-..+.+..++.....+.+..+...++.+|..++..-.....-+..
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 34444455777888888888887775544 11111122345566666667788888999999999998876444555667
Q ss_pred chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hhH
Q 011316 200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQ 278 (488)
Q Consensus 200 ~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 278 (488)
.+.|.++.-+......++..+..++..++..... ....+.+...+.+.+|.++..+...+.......+. ...
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 8889999999888888888888777776653221 14567888899999999999987777777665441 111
Q ss_pred HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHH
Q 011316 279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAI 323 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l 323 (488)
.-.-.++++.++....+. +..||..|..+++-+.. ...+....+
T Consensus 409 ~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred hhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 111235778888888888 89999999999988876 334434333
No 204
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.86 E-value=0.15 Score=45.14 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh
Q 011316 45 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 124 (488)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 124 (488)
.....|++.|.-++--. ++....+.+...+..++++|.....+.++..++.+|..+..+++.+...+-+.+++..++.+
T Consensus 106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34556778887766554 66677777899999999999665448999999999999999899999999999999999999
Q ss_pred hCC--CCHHHHHHHHHHHhhhhCC
Q 011316 125 LSS--PTDDVREQAVWALGNVAGD 146 (488)
Q Consensus 125 L~~--~~~~~~~~a~~~L~~l~~~ 146 (488)
+++ .+.+++-.++..|.-+...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 987 5688888888888776543
No 205
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.81 E-value=0.013 Score=33.19 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.0
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 357 (488)
++|.+++++++++++||..|+.+|+.++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378899999999999999999999999753
No 206
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.76 E-value=1.1 Score=40.33 Aligned_cols=219 Identities=15% Similarity=0.148 Sum_probs=128.3
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011316 77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
.|-..|.+++ +.+|..|+.+|+.+...-+... ....-+..|+.++.+ .+......++.++..+.....-.....
T Consensus 3 ~Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA 78 (262)
T ss_pred chhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH
Confidence 3446678888 8999999999999887444321 222235666665544 555666666777777764332111111
Q ss_pred HhcCChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCc
Q 011316 155 LSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 155 ~~~~~i~~l~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~ 232 (488)
...+..+.+... +......|..+...+..+..............++..+++.+..+ ||.-...+...+..+...-+
T Consensus 79 --~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~ 156 (262)
T PF14500_consen 79 --VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD 156 (262)
T ss_pred --HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence 112333333221 22244567777778877776642222223356777788888764 78877777777777765443
Q ss_pred hhHHHHHHhCCHHHHHHhcCC----------CCc--chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011316 233 DKIQAVIEAGVCPRLVELLRH----------PSP--SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 300 (488)
Q Consensus 233 ~~~~~~~~~~~l~~L~~lL~~----------~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~ 300 (488)
. . ...+.+.+.+.. ++| -.++.--..|.+....++... .-.++.+++-|.++ ...
T Consensus 157 ~--~-----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~-~~~ 223 (262)
T PF14500_consen 157 I--S-----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST-SPS 223 (262)
T ss_pred c--c-----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-CcH
Confidence 1 1 223333333321 122 233333334444444344332 35788999999999 888
Q ss_pred HHHHHHHHHHHHhc
Q 011316 301 IKKEACWTISNITA 314 (488)
Q Consensus 301 v~~~a~~~L~nl~~ 314 (488)
+|..++.+|..++.
T Consensus 224 ~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 224 VKLDSLQTLKACIE 237 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998877
No 207
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.097 Score=50.74 Aligned_cols=151 Identities=23% Similarity=0.330 Sum_probs=99.4
Q ss_pred HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC
Q 011316 80 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG 158 (488)
Q Consensus 80 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 158 (488)
+++.+.+ +-+|...+..++.--.++. +.|++..++.. .++.+.++|+.|..+|+-+|.+++.
T Consensus 523 ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------- 585 (926)
T COG5116 523 ELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------- 585 (926)
T ss_pred HHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------
Confidence 3444444 5555555544433222111 33567777776 6668999999999999999977664
Q ss_pred ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHH
Q 011316 159 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV 238 (488)
Q Consensus 159 ~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 238 (488)
.+...+++|.++.+..++...+.+|.-.|.+... ..++..|-.++.+++.-|++.|+-+++.+.....+....-
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 4667778887778899999999999988877521 2345666677788889999999999988774332221111
Q ss_pred HHhCCHHHHHHhcCCC
Q 011316 239 IEAGVCPRLVELLRHP 254 (488)
Q Consensus 239 ~~~~~l~~L~~lL~~~ 254 (488)
+. ++...+.+.+.+.
T Consensus 660 v~-~I~k~f~~vI~~K 674 (926)
T COG5116 660 VK-RIIKKFNRVIVDK 674 (926)
T ss_pred HH-HHHHHHHHHHhhh
Confidence 11 4555666666544
No 208
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.65 E-value=0.52 Score=47.13 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=105.1
Q ss_pred CHHHHHHhhcCC---CChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCch
Q 011316 74 VVPRFIEFLSRD---DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 74 ~i~~L~~lL~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~ 149 (488)
+-|...+...+. +++.++..|..+|..+..-+.+.... -+|.|+..++ +++|.+|.+|.-.++.+.-.-..
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 344444555441 23889999998988877645554443 3799999988 69999999999999987643222
Q ss_pred hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 150 ~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
..+. ....|.+.| .+.+..|++.++.++..+.... .....|-++.+..++.++|..+...|-..+..++.
T Consensus 968 ~~de-----~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 968 TADE-----HTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred hhHH-----HHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 2111 345677777 6788899999999999987654 24456888899999999999998888888888876
Q ss_pred CCc
Q 011316 230 GTN 232 (488)
Q Consensus 230 ~~~ 232 (488)
.+.
T Consensus 1038 KdN 1040 (1128)
T COG5098 1038 KDN 1040 (1128)
T ss_pred ccc
Confidence 553
No 209
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.64 E-value=0.016 Score=32.75 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316 75 VPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
+|.+++++++++ +++|..|+++|+.+++
T Consensus 2 lp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 789999999999 9999999999999875
No 210
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=3 Score=42.19 Aligned_cols=205 Identities=17% Similarity=0.181 Sum_probs=122.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.+..+++...+.+..+|.+++..|..+.. + ...++..+-.+....+..-+.+.. |.+|.+|+.+|+.+-.+..+.
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~-~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSD-E-NAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhc-c-ccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhcCCCCC-
Confidence 677788888889999999999999999764 3 344555555677778877788888 899999999999998522221
Q ss_pred HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH-HHHHHhh
Q 011316 110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT-WTLSNFC 187 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~-~~L~~l~ 187 (488)
+..+...+..+++. +++++|+.|+.. ++-++. ..+.++... ++-+...++-+- .++-.+
T Consensus 161 ----e~~v~n~l~~liqnDpS~EVRRaaLsn---I~vdns----------Tlp~IveRa-rDV~~anRrlvY~r~lpki- 221 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQNDPSDEVRRAALSN---ISVDNS----------TLPCIVERA-RDVSGANRRLVYERCLPKI- 221 (892)
T ss_pred ----cccHHHHHHHHHhcCCcHHHHHHHHHh---hccCcc----------cchhHHHHh-hhhhHHHHHHHHHHhhhhh-
Confidence 23457788888876 889999986554 443322 233444443 333333333222 111111
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHH
Q 011316 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTV 266 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L 266 (488)
..........+..+-.-+.+.+..++..+...|..=.- . ..+ |=+.-+++-|+- .+.+++..++.++
T Consensus 222 ----d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl------~-~~d-gni~ElL~~ldvsnss~vavk~leal 289 (892)
T KOG2025|consen 222 ----DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWL------R-FSD-GNILELLERLDVSNSSEVAVKALEAL 289 (892)
T ss_pred ----hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHh------h-hcc-ccHHHHHHHhccccchHHHHHHHHHH
Confidence 11111222333334444555566777776666654111 1 111 333444444543 4457888888877
Q ss_pred hHh
Q 011316 267 GNI 269 (488)
Q Consensus 267 ~~l 269 (488)
-..
T Consensus 290 f~~ 292 (892)
T KOG2025|consen 290 FSG 292 (892)
T ss_pred HHH
Confidence 664
No 211
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.60 E-value=0.47 Score=45.37 Aligned_cols=135 Identities=13% Similarity=0.205 Sum_probs=96.3
Q ss_pred CccHHHHHH-cCCHHHHHHhhcCCCC--hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-C---CCHHHHHH
Q 011316 63 SPPINEVIQ-SGVVPRFIEFLSRDDF--PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-S---PTDDVREQ 135 (488)
Q Consensus 63 ~~~~~~~~~-~~~i~~L~~lL~~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~---~~~~~~~~ 135 (488)
....+.+++ ......|...+++... +.+-..|+.++..+....|..-..+.+.|+++.++..+. . ++.++...
T Consensus 95 ~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~ 174 (379)
T PF06025_consen 95 GDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTS 174 (379)
T ss_pred ccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHH
Confidence 344555666 5667777777776542 688899999999999988999999999999999999887 4 67888888
Q ss_pred HHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccH------hHHHHHHHHHHHhhcCCCCCChhhh
Q 011316 136 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL------SMLRNATWTLSNFCRGKPQPLFEQT 198 (488)
Q Consensus 136 a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~------~v~~~a~~~L~~l~~~~~~~~~~~~ 198 (488)
.-.+++.||-+... .+.+.+.+.+..+++.+...... +.....-..+-.|.++.|.-+....
T Consensus 175 lP~~l~AicLN~~G-l~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~ 242 (379)
T PF06025_consen 175 LPNVLSAICLNNRG-LEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDII 242 (379)
T ss_pred HHHHHhHHhcCHHH-HHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 88999999988765 56777789999999888322111 2223333444455555544433333
No 212
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.52 E-value=0.14 Score=35.52 Aligned_cols=66 Identities=24% Similarity=0.358 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011316 302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQG 370 (488)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 370 (488)
.+.|+|+++++++. +.....+.+.++++.++++.... ...+|..|..+|+-++. +.+..+.|.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 57899999999875 55566666789999999998864 77899999999999986 456667766654
No 213
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.51 E-value=2.8 Score=44.00 Aligned_cols=239 Identities=17% Similarity=0.198 Sum_probs=141.8
Q ss_pred chHHHHHHhhcc-----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC----CCC----cchHhHHHHHH
Q 011316 200 PALPALERLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPS----PSVLIPALRTV 266 (488)
Q Consensus 200 ~~~~~L~~ll~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~----~~v~~~a~~~L 266 (488)
+++..++.++.+ .........+..|...+.-.. ..+.+++.+.++.|+..+. .+. +.+.+..+.++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~-NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKV-NRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHH-HHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 667777777764 234566667777777776644 4467888999999888874 333 56777777777
Q ss_pred hHhhcCCchhhH----HHh--------hCCChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011316 267 GNIVTGDDMQTQ----CII--------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 331 (488)
Q Consensus 267 ~~l~~~~~~~~~----~~~--------~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 331 (488)
..+......... ... ...-+..+++.+.++. ++.+....+.+|-+|+.++.+..+.+++. +..
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHH
Confidence 666643221100 000 1122566666665542 57888999999999999988888887763 232
Q ss_pred HHHHHhcC---ChhHHHHHHHHHHHhccCC-----CHHHHHHHHHCCChHHHHhhcCCC--------CHH--------HH
Q 011316 332 LVNLLLNA---EFEIKKEAAWAISNATSGG-----SNEQIKFLVSQGCIKPLCDLLNCP--------DPR--------IV 387 (488)
Q Consensus 332 L~~ll~~~---~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~~~~L~~ll~~~--------~~~--------v~ 387 (488)
.+++=.-+ ..+- ...+.+++.++.+- ....+..+++.|++...++++... .++ -.
T Consensus 274 ~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred hcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 22321111 1111 22355555555432 245677888999999888876521 111 23
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCC
Q 011316 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
..++..|.-++..-.. .+.+...+++..+..|- .+....|-..|-.+|+.+-+.+
T Consensus 353 p~iL~lL~GLa~gh~~-------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 353 PYILRLLRGLARGHEP-------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHHHHHHHHHhcCHH-------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 3455555555443221 22223455677777774 3336678888888888776633
No 214
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.46 E-value=1.7 Score=38.57 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=94.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011316 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
++.|+.-+....+++.+...+..|..++........ -++..+..+...+..+.+..+.+.+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 345555344444489999999999999984412222 235677777777777877788888888876555321
Q ss_pred HhcCChHHHHHHh---------cccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHH
Q 011316 155 LSNGALMPLLAQF---------NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL 224 (488)
Q Consensus 155 ~~~~~i~~l~~~l---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~al~~L 224 (488)
+.+..++..+ ..+...+.......++..+|...|. .....++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2334343331 1122334445556778888887755 5567788888888 788899999999999
Q ss_pred HHhccC
Q 011316 225 SYLSDG 230 (488)
Q Consensus 225 ~~l~~~ 230 (488)
..++..
T Consensus 147 ~~Lc~~ 152 (234)
T PF12530_consen 147 APLCEA 152 (234)
T ss_pred HHHHHH
Confidence 999943
No 215
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.42 E-value=0.69 Score=44.99 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=113.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC---hhHHHHHHHHHHHhcCCCch
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF---PQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~~v~~~a~~~L~~l~~~~~~ 107 (488)
....+.+.+.+++...+..+...|..+.. + ......++...++..|.+++.++.. .++...+++++..+....--
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv 161 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSL-D-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV 161 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccc-c-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence 45678899999999999998888888543 3 5678899999999999999988751 45666666666666552221
Q ss_pred hhHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316 108 NTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~ 185 (488)
..+ .+...++.....+.. ..+..+-..|+..|-++...++..+..+.+.--+..++..+ +..+..++..|...+..
T Consensus 162 sW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 162 SWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA 239 (713)
T ss_pred eee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence 111 112233333333332 25667778899999999888887788888888899999999 77888888888888877
Q ss_pred hhcCCC
Q 011316 186 FCRGKP 191 (488)
Q Consensus 186 l~~~~~ 191 (488)
+....+
T Consensus 240 l~~~a~ 245 (713)
T KOG2999|consen 240 LFRKAP 245 (713)
T ss_pred HHhhCC
Confidence 766553
No 216
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.37 E-value=1.8 Score=39.05 Aligned_cols=225 Identities=14% Similarity=0.061 Sum_probs=127.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC--CCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316 35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--DDFPQLQFEAAWALTNIASGTSENTRVV 112 (488)
Q Consensus 35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 112 (488)
|=..|.++|+..|..|...|..++..-+.+.. ...-+..|++.+.+ .+ ......++.++..+... .......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L----~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~-~~~~~~~ 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFL----SRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKM-KNFSPES 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhc----cHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhC-cCCChhh
Confidence 44567899999999999999999886632221 11223444444322 23 33444446666666642 2211111
Q ss_pred HhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316 113 IDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 113 ~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
...++..+.+-.+ +.....|..+..++..+..+....- .-+..+.+..+++.+....||.-...+...+..+...-
T Consensus 78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~ 155 (262)
T PF14500_consen 78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF 155 (262)
T ss_pred -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 0112333333222 2446778888888888875532211 11223467788888867778988888888888777664
Q ss_pred CCCChhhhhchHHHHHHhh----cc-C-Ch--hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHH
Q 011316 191 PQPLFEQTRPALPALERLI----HS-N-DD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 262 (488)
Q Consensus 191 ~~~~~~~~~~~~~~L~~ll----~~-~-~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 262 (488)
+. ..........+.-.+ +. + |+ -.++..-..|.+.....+.. ..-.++.|++-|.+..+.++..+
T Consensus 156 ~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 156 DI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred cc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHH
Confidence 31 112222233222221 11 1 21 13444444555544443322 23678999999999999999999
Q ss_pred HHHHhHhhcCCc
Q 011316 263 LRTVGNIVTGDD 274 (488)
Q Consensus 263 ~~~L~~l~~~~~ 274 (488)
+.+|..++...+
T Consensus 229 L~tL~~c~~~y~ 240 (262)
T PF14500_consen 229 LQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHCC
Confidence 999988876443
No 217
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.36 E-value=3.3 Score=41.16 Aligned_cols=291 Identities=12% Similarity=0.064 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011316 44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 123 (488)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 123 (488)
-..|..|+..|...+..-+-..+.. +....-.++..+...+.|..++..+..+....... ......-....+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~-----iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~-~~~~R~~fF~~I-- 75 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEE-----IWYAAKDLIDPNQPSEARRAALELLIACIKRQDSS-SGLMRAEFFRDI-- 75 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHH-----HHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccc-cHHHHHHHHHHH--
Confidence 3567788888888776543222222 34444566766655789999999999888743321 111111111122
Q ss_pred hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--------------------------cHhHHH
Q 011316 124 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------------------------KLSMLR 177 (488)
Q Consensus 124 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~v~~ 177 (488)
-....++-...-+.+|..|+.+..+. ...+.+..+.+...+...- +.....
T Consensus 76 -~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 76 -SDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred -hcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 22233444445566677776665544 2245555666655552111 222333
Q ss_pred HHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC
Q 011316 178 NATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 255 (488)
Q Consensus 178 ~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 255 (488)
..+..+.++.+.+ .........+.+..++.+... .+......++..+..+.....--...+. .++..|..... .
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~--~~i~vLCsi~~--~ 228 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS--PCIEVLCSIVN--S 228 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH--HHHHHHhhHhc--c
Confidence 4444555555544 223334445555555555432 2344445555555554432210000000 22333333322 2
Q ss_pred cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc--c---chhhHHHHHHHHHHHHhcCCHHHHHHHHH-c--C
Q 011316 256 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--N---YKKSIKKEACWTISNITAGNVNQIQAIIE-A--G 327 (488)
Q Consensus 256 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~--~ 327 (488)
.+....+-.++.||+...-.. ..+..|..+|.+ + .+..+.+.|+..+..+..+..+....-+. . -
T Consensus 229 ~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~ 301 (464)
T PF11864_consen 229 VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSS 301 (464)
T ss_pred cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHH
Confidence 366777888888888633211 245667777732 1 14556678888888887754222221121 2 2
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
+++.+...++.++..+-.+.+..+.++..
T Consensus 302 vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 302 VLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred HHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 78888899998877777777777777773
No 218
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.36 E-value=5.6 Score=43.98 Aligned_cols=147 Identities=10% Similarity=0.058 Sum_probs=85.1
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011316 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 363 (488)
+++|.|-.-|.+. +..+|..|...++.+......... =-....+...+.-+.+.+.+||.+++....++..+. +...
T Consensus 259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~-~~~~ 335 (1266)
T KOG1525|consen 259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN-PSIA 335 (1266)
T ss_pred HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC-chhh
Confidence 6888898888888 899999999999999875333222 001234566666677778999999999998887653 3322
Q ss_pred HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011316 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443 (488)
Q Consensus 364 ~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 443 (488)
... +....+.... .|+.++....-++.. +.... +.-.+... .+..+.+-+.+...+|+..
T Consensus 336 ~~~---~~~~~l~~~~--~D~~~rir~~v~i~~-~~v~~-------------~~l~~~~~-ll~~~~eR~rDKk~~VR~~ 395 (1266)
T KOG1525|consen 336 KAS---TILLALRERD--LDEDVRVRTQVVIVA-CDVMK-------------FKLVYIPL-LLKLVAERLRDKKIKVRKQ 395 (1266)
T ss_pred hHH---HHHHHHHhhc--CChhhhheeeEEEEE-eehhH-------------hhhhhhHH-HHHHHHHHHhhhhHHHHHH
Confidence 221 2233333333 333333222111111 11111 11111112 3455556666677788888
Q ss_pred HHHHHHHhcC
Q 011316 444 AVKILETYWV 453 (488)
Q Consensus 444 a~~~l~~~~~ 453 (488)
|..-+..+|.
T Consensus 396 Am~~LaqlYk 405 (1266)
T KOG1525|consen 396 AMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHH
Confidence 8777776666
No 219
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.28 E-value=0.22 Score=41.16 Aligned_cols=147 Identities=10% Similarity=0.055 Sum_probs=88.6
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (488)
..++.|+++|+.+.+..+|..++++++.+-.-+|-..+.+.... +.- .-...+......... ..+..... +
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~-~~~~~~~~----e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLP-MMGISPSS----E 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHh-hccCCCch----H
Confidence 46788889998886699999999999999886665444322111 100 001111122221111 11111111 2
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
...-..++..|++.+.+.+-..-...++.++.++..............++|.++..+++.+...++..+.-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2222335778888884444444455677777777755545557778899999999999877788888777766653
No 220
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.13 E-value=4.6 Score=41.48 Aligned_cols=343 Identities=12% Similarity=0.094 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH--hCCCHHHH
Q 011316 44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI--DHGAVPIF 121 (488)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L 121 (488)
.-+|.+.++.+....+..- ..+ ...-.-..++++|++.++--++..+++.+.-+..+-.-..+.+. -......+
T Consensus 501 RiiRRRVa~ilg~Wvsvq~---~~e-~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l 576 (978)
T KOG1993|consen 501 RIIRRRVAWILGQWVSVQQ---KLE-LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL 576 (978)
T ss_pred hHHHHHHHHHHhhhhheec---hHh-HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence 3556677777777665321 111 11224556788898885477889999999888763222222222 12344455
Q ss_pred HHhhCC-CCHHHHHHHHHHHhhhhCCCchhH-HHHHhcCChHHHHHHh-ccc-ccHhHHHHHHHHHHHhhcCCCCCChhh
Q 011316 122 VRLLSS-PTDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQF-NEH-AKLSMLRNATWTLSNFCRGKPQPLFEQ 197 (488)
Q Consensus 122 ~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~l~~~l-~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~ 197 (488)
.++++. +.-+.+...+.+++.+.....+.. .... .+-.++..+ ..+ +.+-++...+.+|.++...-.......
T Consensus 577 fkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~ 653 (978)
T KOG1993|consen 577 FKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEF 653 (978)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccc
Confidence 555554 556777778888887764332211 1111 111222222 222 234456677788888876543333333
Q ss_pred hhchHHHHHHhhccC----ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316 198 TRPALPALERLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 198 ~~~~~~~L~~ll~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 273 (488)
..-.+|. +++-.++ ..-..+.++..-.....+.+.....+. +++|.+..++....+. ...++.++....--.
T Consensus 654 ~~fL~pV-Iel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~-L~t~l~Ii~sYilLd 729 (978)
T KOG1993|consen 654 YPFLYPV-IELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTEN-LPTVLMIISSYILLD 729 (978)
T ss_pred hHHHHHH-HHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhh-HHHHHHHHHHHHhhc
Confidence 2333333 3332222 122344444433333333333323333 5677777777654433 334444444333211
Q ss_pred chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHH
Q 011316 274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAI 351 (488)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~aL 351 (488)
....-.-...|+.+.+.+++.+- ..+-....+.++..+...++ ........++++.+..-+-. +.+.+...-+..+
T Consensus 730 ~~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vv 807 (978)
T KOG1993|consen 730 NTVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVV 807 (978)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHH
Confidence 11111112346777777777665 44455566666666666544 55666677888888776543 3667778888888
Q ss_pred HHhccCCCHHHHHHHH-HCCChHHHHh-h-------cC-CCCHHHHHHHHHHHHHHHHh
Q 011316 352 SNATSGGSNEQIKFLV-SQGCIKPLCD-L-------LN-CPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 352 ~~l~~~~~~~~~~~l~-~~~~~~~L~~-l-------l~-~~~~~v~~~al~~L~~l~~~ 400 (488)
+.+.... ++....+. +..-.+.++. + .. -.+++-++.-+-++..++..
T Consensus 808 aRi~l~n-~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t 865 (978)
T KOG1993|consen 808 ARISLRN-PSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRT 865 (978)
T ss_pred HHHHhcC-hHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhcc
Confidence 8887654 33333332 2222223331 1 11 13455555555566666654
No 221
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=95.13 E-value=3 Score=39.32 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=116.1
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CC-hHHHHHHHhcC-----C--------hhHHHHHHH
Q 011316 286 LPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEA-GI-IGPLVNLLLNA-----E--------FEIKKEAAW 349 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-l~~L~~ll~~~-----~--------~~v~~~a~~ 349 (488)
++.+.+.|.+. ...+...++..+..++. .+......++.. ++ .+.+-+++... + +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 77888888888 67778899999999998 666666666642 22 34455555321 1 289999999
Q ss_pred HHHHhccCCCHHHHHHHHH-CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011316 350 AISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK 428 (488)
Q Consensus 350 aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 428 (488)
.+..+...+++..+..+.+ .+.+..+..-+..++++++...+..+..-+-.+....+. .+..+=....+.+
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~--------~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS--------TKCKLFNEWTLSQ 208 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh--------hhhhhcCHHHHHH
Confidence 9999988888887777665 467888888888888999999999998655444443322 2333333446888
Q ss_pred HHHhhcCCCH----HHHHHHHHHHHHhcC
Q 011316 429 IENLQSHDNT----EIYEKAVKILETYWV 453 (488)
Q Consensus 429 l~~l~~~~~~----~v~~~a~~~l~~~~~ 453 (488)
|..+...+++ .+.+.+...+..+.-
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 9999888888 899999999988775
No 222
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.09 E-value=3 Score=43.51 Aligned_cols=193 Identities=18% Similarity=0.198 Sum_probs=113.0
Q ss_pred HHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH--HHHHhhccCCh-h
Q 011316 139 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDD-E 215 (488)
Q Consensus 139 ~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~L~~ll~~~~~-~ 215 (488)
++.++....+...+.+.+.+++..+...+..-...+++..++..+.+++...+..........+. .+-.++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 34466666677777888999999999999756778899999999999987663333322222222 22233333333 6
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHH-HHHHhc
Q 011316 216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC-LLDLLT 294 (488)
Q Consensus 216 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~-L~~lL~ 294 (488)
.-..++..+..+....++....... +.+...-..++...... ....... ..+.. +..++.
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~~---~~~~~~~-~~f~~~~~~il~ 634 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLTS---EIRVIND-RSFFPRILRILR 634 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCcc---ceeehhh-hhcchhHHHHhc
Confidence 6666777777666554321111111 11222222222222211 1111112 22233 666666
Q ss_pred ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHH
Q 011316 295 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWA 350 (488)
Q Consensus 295 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~a 350 (488)
....+....-|.|++.++...+++..+.+.+.++++.+...-... ..+++..+...
T Consensus 635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (699)
T KOG3665|consen 635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV 691 (699)
T ss_pred ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence 655778889999999999998788888888888888877654433 33444444433
No 223
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.07 E-value=2.6 Score=38.26 Aligned_cols=207 Identities=14% Similarity=0.113 Sum_probs=139.1
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh---hHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHH
Q 011316 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISN 311 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~n 311 (488)
+.+.+.|.+..++..+..-+-+.+..++.+..++-...-.. ....+.. -.+.+..++..-.+ +++-..+...+..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t-~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET-NPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh-CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 45677799999999998888888888888888887632211 1111111 12223333333322 4555555556666
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCC----hHHHHhhcCCCCHHHH
Q 011316 312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC----IKPLCDLLNCPDPRIV 387 (488)
Q Consensus 312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~----~~~L~~ll~~~~~~v~ 387 (488)
+.++ +...+.+....-+.....+++.+..++...|......+...........+.. +. .+.-..++++.+.-++
T Consensus 152 cirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~-n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 152 CIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIR-NYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred HHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHh-ChhhhHHHHHHHHhcccceehH
Confidence 6555 5566667777888889999999988999999999988877654334444433 33 4446668888898889
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
.+++.++..++....+... ....+.+..-++.+..++.+++..+|-.|-.+-.-+.-.
T Consensus 230 rqs~kllg~llldr~N~~~---------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAV---------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHHhHHHHHhCCCcHHH---------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 9999999988765544332 355566556688888888888888888877766554443
No 224
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=95.06 E-value=2.1 Score=41.08 Aligned_cols=134 Identities=14% Similarity=0.171 Sum_probs=95.9
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhcCCC---chhhHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHhhhhCC
Q 011316 77 RFIEFLSRDDFPQLQFEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNVAGD 146 (488)
Q Consensus 77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~lL~~-------~~~~~~~~a~~~L~~l~~~ 146 (488)
.+..++...+ ++-|..|+......++.. ..+++.+.+.-+.+.+-+++.+ ++.-.+..++.+|..+|++
T Consensus 15 ~~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 15 DCLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hHHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 3556666666 688999999999998843 3456667777778888888875 2345567778888888876
Q ss_pred Cchh-HHHHHhcCChHHHHHHhcccccHh------HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCC
Q 011316 147 SPKC-RDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND 213 (488)
Q Consensus 147 ~~~~-~~~~~~~~~i~~l~~~l~~~~~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~ 213 (488)
.+-. .+.++ +.|+.++..+.+..|++ +...+..+|..++...+........|.++.+.++-.-++
T Consensus 94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~ 165 (698)
T KOG2611|consen 94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPD 165 (698)
T ss_pred hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCC
Confidence 4321 12233 35888888886554444 788889999999988777777788999999998766443
No 225
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.06 E-value=0.82 Score=44.41 Aligned_cols=237 Identities=14% Similarity=0.072 Sum_probs=137.2
Q ss_pred hhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHH
Q 011316 21 MFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 100 (488)
Q Consensus 21 ~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~ 100 (488)
.+.. .-+..|+..+.|+|+..|......|..+-.+- ...+..+...+...+.+.+.....+.-....+++++.
T Consensus 129 ~i~~-----~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~--~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~s 201 (409)
T PF01603_consen 129 YIDQ-----KFIKKLLELFDSPDPRERDYLKTILHRIYGKF--PNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGS 201 (409)
T ss_dssp TS-H-----HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHH
T ss_pred HcCH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHH
Confidence 5666 77889999999999999999999999987653 3344555556777888888765546677888999999
Q ss_pred hcCCCc-hhhHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHH
Q 011316 101 IASGTS-ENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 178 (488)
Q Consensus 101 l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~ 178 (488)
+..+-. ..++.. ..=....++.+.+.+. ......-..++..++..++..... .+..+++.- ..+++.-...
T Consensus 202 ii~gf~~plk~eh-~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-----~i~~llk~W-P~t~s~Kev~ 274 (409)
T PF01603_consen 202 IINGFAVPLKEEH-KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-----VIKGLLKHW-PKTNSQKEVL 274 (409)
T ss_dssp HHTT--SS--HHH-HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-----HHHHHHHHS--SS-HHHHHH
T ss_pred HHhccCCCCcHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-----HHHHHHHhC-CCCCchhHHH
Confidence 988532 111111 0011234444444432 333455555666665555543222 233444444 3344444444
Q ss_pred HHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhcCC-
Q 011316 179 ATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRH- 253 (488)
Q Consensus 179 a~~~L~~l~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~- 253 (488)
-+.-+..+...-+... ......+...+...+.+++..|.+.|+..+.|- ....++.. .+++.+...+..
T Consensus 275 FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~------~~~~li~~~~~~i~p~i~~~L~~~ 348 (409)
T PF01603_consen 275 FLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNE------YFLSLISQNSRVILPIIFPALYRN 348 (409)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSH------HHHHHHHCTHHHHHHHHHHHHSST
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCH------HHHHHHHhChHHHHHHHHHHHHHH
Confidence 4444555554432222 223356777788888899999999888665431 11122222 355666666533
Q ss_pred ---C-CcchHhHHHHHHhHhhcCCchhh
Q 011316 254 ---P-SPSVLIPALRTVGNIVTGDDMQT 277 (488)
Q Consensus 254 ---~-~~~v~~~a~~~L~~l~~~~~~~~ 277 (488)
. +..++..|..++..+...++...
T Consensus 349 ~~~HWn~~Vr~~a~~vl~~l~~~d~~lf 376 (409)
T PF01603_consen 349 SKNHWNQTVRNLAQNVLKILMEMDPKLF 376 (409)
T ss_dssp TSS-SSTTHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhCHHHH
Confidence 1 56799999999988887666443
No 226
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.05 E-value=1.9 Score=42.52 Aligned_cols=110 Identities=20% Similarity=0.183 Sum_probs=80.1
Q ss_pred hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011316 195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274 (488)
Q Consensus 195 ~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 274 (488)
.....+.+..+++.+.+++..|+..++..|..++..-.+. ...+-.+++..|.+-+-+..+.||..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 4456777888888888999999999999999888654433 334444778888888877888999999999988764322
Q ss_pred hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316 275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~ 310 (488)
.. +..+...+..++++.++.+||+.|+.-+.
T Consensus 165 ne-----en~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 165 NE-----ENRIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred Ch-----HHHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 11 12344567778877768899988765443
No 227
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.00 E-value=1.6 Score=41.73 Aligned_cols=275 Identities=17% Similarity=0.160 Sum_probs=139.4
Q ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh-hcCCCCCCh
Q 011316 118 VPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF-CRGKPQPLF 195 (488)
Q Consensus 118 i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l-~~~~~~~~~ 195 (488)
+..++.-+. +.+..+|..++--|+.-+.+ +.++..+...|....+++.+....+..+...++.++..+ +.+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 455555554 35678888888888888765 558999999999999999995555443555555555444 444344444
Q ss_pred hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc---------CCCCcchHhHHHHH
Q 011316 196 EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIPALRT 265 (488)
Q Consensus 196 ~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---------~~~~~~v~~~a~~~ 265 (488)
.........+..++... ...+....- ... ........+ .....+...+ .....+.+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hhh-hhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 34455666667776611 000000000 000 000011111 1112122222 01223445556666
Q ss_pred HhHhhcC--------------CchhhHHHhhCCChHHHHHHhcc----cc-----------hhhHHHHHHHHHHHHhcCC
Q 011316 266 VGNIVTG--------------DDMQTQCIINHQALPCLLDLLTQ----NY-----------KKSIKKEACWTISNITAGN 316 (488)
Q Consensus 266 L~~l~~~--------------~~~~~~~~~~~~~~~~L~~lL~~----~~-----------~~~v~~~a~~~L~nl~~~~ 316 (488)
+-.++.. .+.....+.+.|+++.++.++.. .. +...-..+..+|-|.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 6666411 11223445566788888888752 10 1122345667777777655
Q ss_pred HHHHHHHHH--cCChHHHHHH----HhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc-------C---
Q 011316 317 VNQIQAIIE--AGIIGPLVNL----LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-------N--- 380 (488)
Q Consensus 317 ~~~~~~l~~--~~~l~~L~~l----l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll-------~--- 380 (488)
.++..+++. .+.++.+... ...........++..+.|++-+. +.....+...++...+..+. .
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~ 332 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASPKLGQQLGLIVTSFFCVLSLPN 332 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhhHhccchHHHHHhhcccccccc
Confidence 555555543 2233333222 22223445678888999997654 33444444433322221111 1
Q ss_pred ----CCCHHHHHHHHHHHHHHHHhhh
Q 011316 381 ----CPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 381 ----~~~~~v~~~al~~L~~l~~~~~ 402 (488)
...-++...+++++.|+++..+
T Consensus 333 ~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 333 YVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccchHHHHHHHhHHHheeeCc
Confidence 1123566677777777766544
No 228
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=94.98 E-value=4.3 Score=42.39 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=110.0
Q ss_pred HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHhcCCh-
Q 011316 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEAGIIGPLVNLLLNAEF- 341 (488)
Q Consensus 265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~~~l~~L~~ll~~~~~- 341 (488)
+++++...++...+.+++.+++..+...++.-....++..+...++|++... .+......... ...+..++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~-~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFID-FSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHhhcchh
Confidence 7889999999999999999999999999986557789999999999999732 22111111111 1223333333333
Q ss_pred hHHHHHHHHHHHhccCCCH--------HHHHHHHH--------------CCChHH-HHhhcC-CCCHHHHHHHHHHHHHH
Q 011316 342 EIKKEAAWAISNATSGGSN--------EQIKFLVS--------------QGCIKP-LCDLLN-CPDPRIVTVCLEGLENI 397 (488)
Q Consensus 342 ~v~~~a~~aL~~l~~~~~~--------~~~~~l~~--------------~~~~~~-L~~ll~-~~~~~v~~~al~~L~~l 397 (488)
+.-..|+..|+.+..+++. .....+.+ ...+.. +..++. ...+..+..|++++.++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~ 652 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV 652 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence 6777888888888775321 00011110 111222 333343 23345667778888877
Q ss_pred HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhc
Q 011316 398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~~~~ 452 (488)
+..... +.....+.|++..+.++. .+...+++..+..++....
T Consensus 653 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 653 LEQNKE------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred HHcChh------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 766553 467778888888888873 3336667777777776543
No 229
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.98 E-value=5.7 Score=41.78 Aligned_cols=132 Identities=13% Similarity=0.121 Sum_probs=90.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh
Q 011316 299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 377 (488)
Q Consensus 299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ 377 (488)
+.++..+..++++++....... ...+|.|++-|... ...+|.+...+++.++..-+ .+.+ ..++.+..
T Consensus 945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d-~YiP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTD-RYIPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHH-HhhHHHHH
Confidence 4577888888999987644432 23688888888765 56788888888888775321 1222 47899999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011316 378 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 378 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
.|.++++-+|.+++-.|.+++..+--- |+..+ .++-+.. +-+.+++++..|..++......++.
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vK-----------w~G~L----f~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVK-----------WNGEL----FIRFMLA-LLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhhhh-----------cchhh----HHHHHHH-HcccCHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999998654311 11111 0122222 3445788999998888887776543
No 230
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=94.93 E-value=0.18 Score=35.08 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=52.0
Q ss_pred HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011316 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327 (488)
Q Consensus 259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 327 (488)
.+.+++++++++. ++.....+.+.++++.++++..+.+...+|-.|.++|+-++.. .+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 5689999999988 4555555667799999999998776889999999999999875 55455444443
No 231
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.81 E-value=0.92 Score=45.53 Aligned_cols=231 Identities=14% Similarity=0.068 Sum_probs=134.6
Q ss_pred HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC---CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 155 ~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
++.++++.++..-.......+-...-..|+.+.... .....+...-.-|.+.+-|+-.|..|+..|+..+.+.-.-.
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 355667666655433232233333334444444432 11122222334456667788889999999999999877321
Q ss_pred -c----hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC----ChHHHHHHhcccchhhHH
Q 011316 232 -N----DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ----ALPCLLDLLTQNYKKSIK 302 (488)
Q Consensus 232 -~----~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----~~~~L~~lL~~~~~~~v~ 302 (488)
+ +.+..+++ +-...+.++|.++.|.+|..|..-++.+.+.. -.++... ++..+..-+......+||
T Consensus 206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f----We~iP~~i~~~ll~kI~d~~a~dt~s~VR 280 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKF----WEMIPPTILIDLLKKITDELAFDTSSDVR 280 (1005)
T ss_pred CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHHhhhccchhee
Confidence 1 22333444 44677899999999999999887776665522 1222222 233333333333256788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011316 303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 382 (488)
Q Consensus 303 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~ 382 (488)
......|..+... +. .-.+++ .++|.+-..+.++...||..+...|..+-... ...+..--..+.++..|..+
T Consensus 281 ~svf~gl~~~l~n-p~-sh~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr----a~~f~~I~~~d~~l~~L~~d 353 (1005)
T KOG1949|consen 281 CSVFKGLPMILDN-PL-SHPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR----AAKFWKICPMDHILVRLETD 353 (1005)
T ss_pred hhHhcCcHHHHcC-cc-chhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhhh----hhhhhccccHHHHHHHHhcc
Confidence 8888888877764 22 112233 25677777888888999998888888774321 12222223456666667776
Q ss_pred CHHHHHHHHHHHHHH
Q 011316 383 DPRIVTVCLEGLENI 397 (488)
Q Consensus 383 ~~~v~~~al~~L~~l 397 (488)
+.++....+..+-+.
T Consensus 354 ~~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 354 SRPVSRRLVSLIFNS 368 (1005)
T ss_pred ccHHHHHHHHHHHHh
Confidence 666655555554444
No 232
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=94.63 E-value=0.9 Score=47.20 Aligned_cols=198 Identities=16% Similarity=0.121 Sum_probs=107.8
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC----CCHHHHHHHHHHHhhhhC----
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAG---- 145 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~~~~~a~~~L~~l~~---- 145 (488)
.+..+.+++.+.. .. -..|...+..+......... ..+..+..++++ .++.++..|+-+++.+..
T Consensus 396 av~~i~~~I~~~~-~~-~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKK-LT-DDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT--S--HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-CC-HHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 3555666666644 11 22244445444432212222 235666666664 567888888888887752
Q ss_pred CC-----chhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---Ch
Q 011316 146 DS-----PKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DD 214 (488)
Q Consensus 146 ~~-----~~~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~---~~ 214 (488)
.. ............++.+...+. ...+..-+..++.+|+|+... ..++.+..++... ..
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence 21 000011122235666666664 234557788899999998643 5778888888765 67
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 292 (488)
Q Consensus 215 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 292 (488)
.++..|++++..+....++.. .+.++.++.+ .++++|..|+..|... +|.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence 889999999998876655332 2556666654 4567888887666442 2322 235567777
Q ss_pred hcccchhhHHHHHH
Q 011316 293 LTQNYKKSIKKEAC 306 (488)
Q Consensus 293 L~~~~~~~v~~~a~ 306 (488)
+....+..|.....
T Consensus 601 l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 601 LWNEPSNQVASFVY 614 (618)
T ss_dssp HTT-S-HHHHHHHH
T ss_pred HhhCchHHHHHHHH
Confidence 76654566655443
No 233
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=94.50 E-value=8.5 Score=44.50 Aligned_cols=265 Identities=14% Similarity=0.095 Sum_probs=141.1
Q ss_pred cCCCHHHHHHHHHHHHHHhccC--CCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCC
Q 011316 40 WSDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA 117 (488)
Q Consensus 40 ~s~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 117 (488)
.+.+..+...|+..|++++.+- ..+....-.+..++..+..++.+..+.++++..++|+.++..... . -+..|
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~-nIkSG- 1221 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---N-NVKSG- 1221 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---h-hhhcC-
Confidence 3456788888999888876532 112122223456788888888766658999999999999876222 1 22333
Q ss_pred HHHHHHhhC----CCCHHHHHHHHHHHhhhhCCCch-h----HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh--
Q 011316 118 VPIFVRLLS----SPTDDVREQAVWALGNVAGDSPK-C----RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF-- 186 (488)
Q Consensus 118 i~~L~~lL~----~~~~~~~~~a~~~L~~l~~~~~~-~----~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l-- 186 (488)
.+.+..++. +.++.+.+.|..++..++.+.-. . ...+. ..+..+.....+..+..+--.|+..|+.+
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~ 1299 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCAT 1299 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHH
Confidence 555555554 46788888999988887643211 0 01111 13334444443333344444455445433
Q ss_pred --hcCCC-----------------------C------CChhhhhchHHHHH---HhhccCChhHHHHHHHHHHHhccCCc
Q 011316 187 --CRGKP-----------------------Q------PLFEQTRPALPALE---RLIHSNDDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 187 --~~~~~-----------------------~------~~~~~~~~~~~~L~---~ll~~~~~~v~~~al~~L~~l~~~~~ 232 (488)
+.... . .........+|.|. .+..++..+||..|+.+|..+.....
T Consensus 1300 ~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG 1379 (1780)
T PLN03076 1300 KLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHG 1379 (1780)
T ss_pred HHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhh
Confidence 11100 0 00001122334333 44556789999999999987774322
Q ss_pred h-----hHHHHHHhCCHHHHHHhcCCC------------------C-c----chHhH---HHHHHhHhhcCCchhhHHHh
Q 011316 233 D-----KIQAVIEAGVCPRLVELLRHP------------------S-P----SVLIP---ALRTVGNIVTGDDMQTQCII 281 (488)
Q Consensus 233 ~-----~~~~~~~~~~l~~L~~lL~~~------------------~-~----~v~~~---a~~~L~~l~~~~~~~~~~~~ 281 (488)
. .-..+++ +++-.++..++.. + . ..... |+..+..+....-.....++
T Consensus 1380 ~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L 1458 (1780)
T PLN03076 1380 HLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL 1458 (1780)
T ss_pred ccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2222333 3444444443210 0 0 01233 33444444332222222222
Q ss_pred hCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 282 NHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 282 ~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
+ +++..|...+..+ +..+-+.+..+|.++..
T Consensus 1459 ~-~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1459 K-KVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred H-HHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 2 4556666666666 78888888888888876
No 234
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=94.50 E-value=4.8 Score=38.77 Aligned_cols=132 Identities=12% Similarity=0.091 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCc--cHHHHHHcCCHHHHHHhhcCCC----Chh--HHHHHHHHHHHhcC
Q 011316 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSP--PINEVIQSGVVPRFIEFLSRDD----FPQ--LQFEAAWALTNIAS 103 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~~i~~L~~lL~~~~----~~~--v~~~a~~~L~~l~~ 103 (488)
......+++.++.+.|..|+-...++..+.+-. ..+.+.+.-+++.+-++|.+.+ .|+ .+.-++.+|...|.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 334667777788888999999999988765322 2344667778888888886543 233 45556677888887
Q ss_pred CCchhh--HHHHhCCCHHHHHHhhCC-CCH------HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011316 104 GTSENT--RVVIDHGAVPIFVRLLSS-PTD------DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 167 (488)
Q Consensus 104 ~~~~~~--~~~~~~g~i~~L~~lL~~-~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l 167 (488)
.|+.. ..++ +-||.|+.+++. .++ .+.+.+..+|..++...+. ...++..|.++.+.+.-
T Consensus 93 -~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 93 -VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMY 161 (698)
T ss_pred -ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHH
Confidence 55432 2333 458999998875 333 3788899999999988665 56667789999888654
No 235
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.39 E-value=3.3 Score=39.58 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=90.7
Q ss_pred HHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc----c-cchhhHHHHHHHHHHH
Q 011316 238 VIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT----Q-NYKKSIKKEACWTISN 311 (488)
Q Consensus 238 ~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~----~-~~~~~v~~~a~~~L~n 311 (488)
+.+.+-.+.+-.-++.. ....|.+|+..+..++...+.....++ ...+..++. + ..+++-|..|+..++.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 55556556665555543 356777899999999875444333222 233344443 1 2267788899999999
Q ss_pred HhcCCHH------------HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc
Q 011316 312 ITAGNVN------------QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 379 (488)
Q Consensus 312 l~~~~~~------------~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll 379 (488)
++..... ....++...++|.|. --.+..+-++-.|++.+..+-..-+++.... +++.+++.|
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L 355 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL 355 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence 9874211 345555666778776 2223367788999999999977665544333 799999999
Q ss_pred CCCCHHHHHHHHHHH
Q 011316 380 NCPDPRIVTVCLEGL 394 (488)
Q Consensus 380 ~~~~~~v~~~al~~L 394 (488)
.+++.-|...|..++
T Consensus 356 ~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 356 QSSSYVVHTYAAIAI 370 (370)
T ss_dssp TSS-HHHHHHHHHHH
T ss_pred CCCCcchhhhhhhhC
Confidence 998888777766543
No 236
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.36 E-value=1.2 Score=37.59 Aligned_cols=142 Identities=17% Similarity=0.147 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCC-Cch----hhHHHHh------CCCHHHH-HHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc
Q 011316 90 LQFEAAWALTNIASG-TSE----NTRVVID------HGAVPIF-VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN 157 (488)
Q Consensus 90 v~~~a~~~L~~l~~~-~~~----~~~~~~~------~g~i~~L-~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (488)
+|..|+.+|..++.. ++. +...++- ...-+.| .-++.++++.+|..|+.++..+..+...+-....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 677888888888774 211 1111221 1123334 445677899999999999999876543221111111
Q ss_pred C-------------------ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh--hhhhchHHHHHHhhccCChhH
Q 011316 158 G-------------------ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRPALPALERLIHSNDDEV 216 (488)
Q Consensus 158 ~-------------------~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~~~L~~ll~~~~~~v 216 (488)
. .-..|+..+....+..+....+.++..+....|.... .....++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 1223455555566788888999999999988754433 345667777778888999999
Q ss_pred HHHHHHHHHHhccCC
Q 011316 217 LTDACWALSYLSDGT 231 (488)
Q Consensus 217 ~~~al~~L~~l~~~~ 231 (488)
+..++.+++.+....
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999887654
No 237
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.34 E-value=0.62 Score=44.38 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=84.9
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHH
Q 011316 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSY 226 (488)
Q Consensus 153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~al~~L~~ 226 (488)
.+.+.+-.+.+=+-+..+...+-++.|+..+..+++........... ..+..++. +.++.-+..|+..++.
T Consensus 205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~---~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a 281 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM---QYIQQLLQQYASNPSNNWRSKDGALYLIGA 281 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence 34444555555555533334566778888999998653211111222 22333333 3467888889999999
Q ss_pred hccCCch------------hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc
Q 011316 227 LSDGTND------------KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT 294 (488)
Q Consensus 227 l~~~~~~------------~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~ 294 (488)
++..... ....+...-++|-|. --.+..|-++..|++.+..+-..-+. ..+ .++++.++..|.
T Consensus 282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~l~~~L~ 356 (370)
T PF08506_consen 282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPLLVNHLQ 356 (370)
T ss_dssp HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHHHHHHTT
T ss_pred HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHHHHHHhC
Confidence 8865421 123344444555554 22234577888888888777654332 112 258999999999
Q ss_pred ccchhhHHHHHHHHH
Q 011316 295 QNYKKSIKKEACWTI 309 (488)
Q Consensus 295 ~~~~~~v~~~a~~~L 309 (488)
++ +.-|+..|+.++
T Consensus 357 ~~-~~vv~tyAA~~i 370 (370)
T PF08506_consen 357 SS-SYVVHTYAAIAI 370 (370)
T ss_dssp SS--HHHHHHHHHHH
T ss_pred CC-CcchhhhhhhhC
Confidence 99 888998888765
No 238
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.30 E-value=1.1 Score=37.66 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=90.0
Q ss_pred hHhHHHHHHhHhhcCCchhh-----HHHh-h-----C-CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011316 258 VLIPALRTVGNIVTGDDMQT-----QCII-N-----H-QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325 (488)
Q Consensus 258 v~~~a~~~L~~l~~~~~~~~-----~~~~-~-----~-~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 325 (488)
+|..|+.+|..++...+... ..++ + . .-...+.-++.++ ++++|..|+.++..+..+.......--+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 67788888888887522110 0111 1 1 2334455566777 9999999999999998875443332221
Q ss_pred c-------------------CChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011316 326 A-------------------GIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385 (488)
Q Consensus 326 ~-------------------~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 385 (488)
. .+-..|+..++.+ +..+....+.++..+..+..-...+.=.-..++..+..++.+.|+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1 1234455556554 6778888999999998766433222100112455555567789999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 011316 386 IVTVCLEGLENILKAGE 402 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~ 402 (488)
++..++.+++.++....
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999988876543
No 239
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=94.19 E-value=5.1 Score=37.78 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=111.9
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhc-CCchhhHHHhhC-C-ChHHHHHHhcccc----h--------hhHHHHHHHH
Q 011316 244 CPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-Q-ALPCLLDLLTQNY----K--------KSIKKEACWT 308 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~~~~L~~lL~~~~----~--------~~v~~~a~~~ 308 (488)
+..+...|.+..+.+...++..|..++. ......+.++.. + -.+.+.+++.... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7788888988888888999999999999 555666666532 1 1234444442210 1 2788888877
Q ss_pred HHHHhc-CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHH-hccCC--CHHHHHHHHHCCChHHHHhhcCCCC
Q 011316 309 ISNITA-GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISN-ATSGG--SNEQIKFLVSQGCIKPLCDLLNCPD 383 (488)
Q Consensus 309 L~nl~~-~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~ 383 (488)
+..+.. +++..+..+++ .+.+..+.+-+..+++++....+.+|.. +.... .+...-.+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666665 66777777664 6678899999988888999999999985 44322 2344455556678899999888777
Q ss_pred H----HHHHHHHHHHHHHHHh
Q 011316 384 P----RIVTVCLEGLENILKA 400 (488)
Q Consensus 384 ~----~v~~~al~~L~~l~~~ 400 (488)
+ .+...+-+.|..++..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 7 8888888888888753
No 240
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.17 E-value=3.9 Score=36.34 Aligned_cols=138 Identities=16% Similarity=0.090 Sum_probs=91.0
Q ss_pred HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH
Q 011316 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 240 (488)
Q Consensus 161 ~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 240 (488)
+.++..+.+..+++.+...+.+|..++..+ . .....++..+..+...+......-+.+.+..+...++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence 445554667789999999999999999875 1 3445667777777777777776677777777776654322
Q ss_pred hCCHHHHHHh-----c---CC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh-cccchhhHHHHHHHHH
Q 011316 241 AGVCPRLVEL-----L---RH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTI 309 (488)
Q Consensus 241 ~~~l~~L~~l-----L---~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~~v~~~a~~~L 309 (488)
+.+..++.. . .+ ...+.......++..+|...+.... .+++.+..++ ++. ++.++..++.++
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~-~~~~~alale~l 146 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSC-DEVAQALALEAL 146 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence 222322222 1 11 1233444445677788876665322 4577788888 666 788888888899
Q ss_pred HHHhc
Q 011316 310 SNITA 314 (488)
Q Consensus 310 ~nl~~ 314 (488)
..++.
T Consensus 147 ~~Lc~ 151 (234)
T PF12530_consen 147 APLCE 151 (234)
T ss_pred HHHHH
Confidence 88884
No 241
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.02 E-value=0.53 Score=40.09 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=80.4
Q ss_pred cCChhHHHHHHHHHHHhccCCchhHHHHHH----------------hCCHHHHHHhcCC------CCcchHhHHHHHHhH
Q 011316 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLRH------PSPSVLIPALRTVGN 268 (488)
Q Consensus 211 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~lL~~------~~~~v~~~a~~~L~~ 268 (488)
+++......++..|.|++....... .+++ ...+..|+..+.. +...-......++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 3455566677777888876554332 1221 1345666666544 234455677889999
Q ss_pred hhcCCchhhHHHhhC--CC--hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHhcC
Q 011316 269 IVTGDDMQTQCIINH--QA--LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLNA 339 (488)
Q Consensus 269 l~~~~~~~~~~~~~~--~~--~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~l~~L~~ll~~~ 339 (488)
++. .++.++.+++. +. +..|+..+.+. +..-|..++.+|.|++.....+ ..++. .+++|.|+--+..+
T Consensus 85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaGp 159 (192)
T PF04063_consen 85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAGP 159 (192)
T ss_pred hcC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccCC
Confidence 998 45566666643 33 77888888888 8777889999999999864443 33333 35677666665543
No 242
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.95 E-value=1.6 Score=44.15 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=108.8
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
..+|.|...++ +...+..+.-+..+--+..+. -..-+.+.++|.|..-+++.+ ..+|..++..+..++..-+
T Consensus 349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt----~~e~~~~~IlplL~~S~~~~~-~~iQ~~~L~~lptv~e~iD-- 421 (700)
T KOG2137|consen 349 KMLPALKPIYSASDPKQALLFILENMDLLKEKT----PPEEVKEKILPLLYRSLEDSD-VQIQELALQILPTVAESID-- 421 (700)
T ss_pred hhhHHHHHHhccCCcccchhhHHhhHHHHHhhC----ChHHHHHHHHHHHHHHhcCcc-hhhHHHHHHhhhHHHHhcc--
Confidence 45566666665 334444433333333333322 223345678899999999988 8999999999999987222
Q ss_pred hHHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 109 TRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~l-L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
-..++.-++|.+-.+ +.+.+..++.+++.+++.++.. .+...-...+.++.+.. +..++.+....+.+..++.
T Consensus 422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHH
Confidence 344555667888775 4457899999999999999722 12221112344555555 5667888777777777776
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCC
Q 011316 188 RGKPQPLFEQTRPALPALERLIHSND 213 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~ll~~~~ 213 (488)
...+.........++|.++.+...+.
T Consensus 496 ~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 496 LIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hhcccceeeehhhhhhhhhhhhhccc
Confidence 65543344555778888887776553
No 243
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=93.92 E-value=4 Score=41.67 Aligned_cols=117 Identities=13% Similarity=0.171 Sum_probs=79.9
Q ss_pred CcchhhhHHHHhhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHH
Q 011316 1 MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE 80 (488)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ 80 (488)
|||+|=+|...+.+ +-|..|...-...=+.++.+++..+..+++.. ++.- ...+..+++
T Consensus 290 l~WyfE~~LK~ly~---------------rfievLe~lS~D~L~~vk~raL~ti~~lL~~k-PEqE-----~~LL~~lVN 348 (988)
T KOG2038|consen 290 LMWYFEHELKILYF---------------RFIEVLEELSKDPLEEVKKRALKTIYDLLTNK-PEQE-----NNLLVLLVN 348 (988)
T ss_pred hHHHHHHHHHHHHH---------------HHHHHHHHHccccHHHHHHHHHHHHHHHHhCC-cHHH-----HHHHHHHHH
Confidence 68999999775443 22333443334455789999999999999875 3332 345678889
Q ss_pred hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC--HHHHHHHHHHHhhhh
Q 011316 81 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--DDVREQAVWALGNVA 144 (488)
Q Consensus 81 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--~~~~~~a~~~L~~l~ 144 (488)
-|.+++ ..+...|...|.+|....|..+..+ +..+.+++-.++ ......|+..|..+.
T Consensus 349 KlGDpq-nKiaskAsylL~~L~~~HPnMK~Vv-----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 349 KLGDPQ-NKIASKASYLLEGLLAKHPNMKIVV-----IDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred hcCCcc-hhhhhhHHHHHHHHHhhCCcceeeh-----HHHHHHHHcccCccccceeehhhhhhhhH
Confidence 999998 6899999999999988788776654 455556554433 334445666666554
No 244
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.91 E-value=1 Score=38.49 Aligned_cols=110 Identities=10% Similarity=0.127 Sum_probs=74.8
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHHHhCCCHHHHHHhhCC---------CCHHHHHHHHHHHhhh
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSS---------PTDDVREQAVWALGNV 143 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~lL~~---------~~~~~~~~a~~~L~~l 143 (488)
....+++.+.+..... ..+..|..... ........+++.|++..|+.+|.. .+......++.++..+
T Consensus 67 ~p~~~i~~L~~~~~~~---~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS---KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT--HH---HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCccH---HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 4556677776665221 22333333222 234667788888999999998753 3457888999999999
Q ss_pred hCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 144 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
.....+....+...+.+..++..+ .+.+..++..++..|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 877666555555567788888888 7888999999999998876
No 245
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=93.86 E-value=4.7 Score=40.95 Aligned_cols=175 Identities=13% Similarity=0.105 Sum_probs=105.4
Q ss_pred hhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011316 197 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 197 ~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
.....+|.|...++.. ...+....+.-+.-|...-+ ..-+...+++.|...+++.+..++..++..+..++..-+
T Consensus 346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD- 421 (700)
T KOG2137|consen 346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID- 421 (700)
T ss_pred hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-
Confidence 3455667777777642 22222222222222222111 113334788889999999999999999999999887544
Q ss_pred hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
-..+...+++.+..+.....+..++..++.+++.++.. .+...-...+..+.+.++..++.+......+..++.
T Consensus 422 --~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 422 --VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred --HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 23345567788877654433788999999999988731 111111124555666677778888888777777776
Q ss_pred cCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 011316 356 SGGSNEQIKFLVSQGCIKPLCDLLNCPD 383 (488)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 383 (488)
..... . ..+....+++.++-+...+.
T Consensus 496 ~~~~~-g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 496 LIIYS-G-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hhccc-c-eeeehhhhhhhhhhhhhccc
Confidence 54321 1 22233356777776655444
No 246
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.86 E-value=1.9 Score=42.18 Aligned_cols=157 Identities=13% Similarity=0.123 Sum_probs=115.8
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCC
Q 011316 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPL 194 (488)
Q Consensus 118 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~ 194 (488)
...+...+.+++..-+..++..+..++.+.. +...++....+..+.+++.+.. ..++....+.+++.+....-...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3556677777777777778888888877654 6677888888999999885433 45677778888887776654334
Q ss_pred hhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC
Q 011316 195 FEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272 (488)
Q Consensus 195 ~~~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 272 (488)
......++.....+... .+..+...|+..+-++.-.++...+.+.+.--+..++..+...+..++..|+..+..+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 34444555555555532 3677888999999999888877777788878899999999998888888888888877765
Q ss_pred Cch
Q 011316 273 DDM 275 (488)
Q Consensus 273 ~~~ 275 (488)
.++
T Consensus 244 a~~ 246 (713)
T KOG2999|consen 244 APD 246 (713)
T ss_pred CCh
Confidence 443
No 247
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.81 E-value=9.2 Score=39.42 Aligned_cols=319 Identities=12% Similarity=0.083 Sum_probs=173.5
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhccCC--CccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 33 PAMVAGVWSD-DRNIQLDATTQFRKLLSIER--SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 33 ~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++++|+.. |..+++.+++.+.-.+.+-+ .+..... -++....+.++++.-..-+.|...+..++.+.....+..
T Consensus 529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~-lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I 607 (978)
T KOG1993|consen 529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPY-LENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI 607 (978)
T ss_pred HHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhh-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 3567777765 77888899999888776431 1111212 245666677777665435677777777777766333332
Q ss_pred HHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCC----CchhHHHHHhcCChHHHHHHhcccccHh---HHHHHH
Q 011316 110 RVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGD----SPKCRDLVLSNGALMPLLAQFNEHAKLS---MLRNAT 180 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~--~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~~i~~l~~~l~~~~~~~---v~~~a~ 180 (488)
.... ..++..+-.+-+ ++.+-+|...+.+|.|+... +..+. .++-+++++-.+-++++ ..+.+.
T Consensus 608 ~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~L~EDgm 680 (978)
T KOG1993|consen 608 APYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVYLLEDGM 680 (978)
T ss_pred hHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceeehhhhHH
Confidence 2111 112222222222 25677888888888888631 22211 12334444442222222 233333
Q ss_pred HHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh-ccCCchhHHHHHHhCCHHHHHHhcCCCCcchH
Q 011316 181 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL-SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 259 (488)
Q Consensus 181 ~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l-~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~ 259 (488)
..-.....+. ..-....-+.+|.+...+......++ .++.++..- .-.+....+ -...|++..+..++.+-..+-.
T Consensus 681 eLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl 757 (978)
T KOG1993|consen 681 ELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGL 757 (978)
T ss_pred HHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHHHH
Confidence 3333333332 22222335677777777765433332 233333322 222222222 2223788888888887666677
Q ss_pred hHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh-cccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHH---
Q 011316 260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVN--- 334 (488)
Q Consensus 260 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~--- 334 (488)
...+.++..+...++ ........++++.+..-+ .....+.+...-..+++.++..+++....+++ ..-.+.++.
T Consensus 758 ~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li 836 (978)
T KOG1993|consen 758 QAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLI 836 (978)
T ss_pred HHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHH
Confidence 788888888887655 333344557777766543 33336677777777888887777777666554 222333332
Q ss_pred -----HHhc-CChhHHHHHHHHHHHhccCCCHHHH
Q 011316 335 -----LLLN-AEFEIKKEAAWAISNATSGGSNEQI 363 (488)
Q Consensus 335 -----ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~ 363 (488)
+..+ .+++-|+--+-+++.+...+.+...
T Consensus 837 ~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~il 871 (978)
T KOG1993|consen 837 GNWILLFDHINHPKDRKLNTLALSSLLRTNNPDIL 871 (978)
T ss_pred HHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHH
Confidence 2211 2677777777788888776554443
No 248
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.72 E-value=3.9 Score=45.14 Aligned_cols=148 Identities=16% Similarity=0.175 Sum_probs=92.4
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH
Q 011316 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 321 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 321 (488)
+++|.|..-|.+++..+|..|...++.+......+.. --...+....+.-+.+. +..+|.+++....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7889998889999999999999999999885543322 00123455566666677 889999999999888776555433
Q ss_pred HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 322 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
... ....+.. .+.|++++.....++.... -......+... .+..+.+.+.+....||..|+..|..+...
T Consensus 337 ~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~---v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALRE--RDLDEDVRVRTQVVIVACD---VMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHHh--hcCChhhhheeeEEEEEee---hhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 221 1222222 2234444433322222111 11222222333 566666677788899999999988888763
No 249
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.69 E-value=0.29 Score=35.97 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=64.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+...+..+.++.+.+|-.++..|++++...+ ....-..+++..+...|++++ +-+-..|+.+|..++...++
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~-- 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD-- 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH--
Confidence 345678889999999999999999999998753 122223567888889999999 89999999999999984443
Q ss_pred HHHHhCCCHHHHHHhhC
Q 011316 110 RVVIDHGAVPIFVRLLS 126 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~ 126 (488)
.+++.|++...
T Consensus 77 ------~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 ------EVLPILLDEYA 87 (92)
T ss_pred ------HHHHHHHHHHh
Confidence 23555555443
No 250
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.44 E-value=0.78 Score=39.22 Aligned_cols=99 Identities=15% Similarity=0.079 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhh
Q 011316 304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 378 (488)
Q Consensus 304 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~l 378 (488)
.|...|..++++ ++....+++..+--.+...+... ...+|..++.+++.+..++++...+++....+++.+.++
T Consensus 119 naL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 444455555555 77777777765544445555432 456889999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhh
Q 011316 379 LNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 379 l~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
++.+.+--+..++.++..++..+..
T Consensus 198 me~gSElSktvaifI~qkil~dDvG 222 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVG 222 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchh
Confidence 9988877777788888887765543
No 251
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.34 E-value=5.3 Score=39.09 Aligned_cols=277 Identities=10% Similarity=0.080 Sum_probs=125.8
Q ss_pred CHHHHHHhhcC---CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCch
Q 011316 74 VVPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 74 ~i~~L~~lL~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~ 149 (488)
.+..|+.++.. ..++.+-....+++..+-.........+++ ..+..+....++ .+|..-.....+++.+.+....
T Consensus 27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~ 105 (435)
T PF03378_consen 27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE 105 (435)
T ss_dssp HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence 34455555544 222556666666665555544444444432 233444444455 5677777777777766543221
Q ss_pred hHH---HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHH
Q 011316 150 CRD---LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALS 225 (488)
Q Consensus 150 ~~~---~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~ 225 (488)
... .-.+...++.+...| +..-.+..-++...++.+.+..+ ..........++.++.-.--....-.-...+.|.
T Consensus 106 ~~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~ 184 (435)
T PF03378_consen 106 ADPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQ 184 (435)
T ss_dssp GGHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHH
Confidence 111 123444566677777 44444566667777777766543 1111222333333332111111111223333344
Q ss_pred HhccCCchhHHHHHHh----CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-hHHHhhCCChHHHHHHhcccchhh
Q 011316 226 YLSDGTNDKIQAVIEA----GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKS 300 (488)
Q Consensus 226 ~l~~~~~~~~~~~~~~----~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~lL~~~~~~~ 300 (488)
......+... ... +++..+-+++.+... -..+...|..+...-+.. ....+. .++..++.-|++....+
T Consensus 185 a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~k 258 (435)
T PF03378_consen 185 AYIKKDPSFI---VANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEK 258 (435)
T ss_dssp HHHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HH
T ss_pred HHHHhCchhh---cchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHH
Confidence 3333322221 111 233444455555432 245667777776655432 222222 45666666666554666
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHH---cCChHHHHHH--Hh---c-CChhHHHHHHHHHHHhccCC
Q 011316 301 IKKEACWTISNITA-GNVNQIQAIIE---AGIIGPLVNL--LL---N-AEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 301 v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~l~~L~~l--l~---~-~~~~v~~~a~~aL~~l~~~~ 358 (488)
.++..+..++.++. .+++..-..++ .|++..++.- +. . ..+.=|+.++-++.++....
T Consensus 259 f~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 259 FVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 66666666665554 34444444443 4444444442 11 1 12334566777777766433
No 252
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=93.18 E-value=6.6 Score=38.45 Aligned_cols=263 Identities=11% Similarity=0.091 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC----CCCCChhhhhchHH
Q 011316 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG----KPQPLFEQTRPALP 203 (488)
Q Consensus 128 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~~ 203 (488)
+++-+-+..++++..+-..-......++.. .+..+.....+.+++..-.....+++.+.+. ++.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 466677777777666554433333333221 2222222332334566555555555555443 23333356678889
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcc---hHhHHHHHHhHhhcCCchhhHHH
Q 011316 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCI 280 (488)
Q Consensus 204 ~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~ 280 (488)
.+..+|+.+-.+..-++...++.+.+..+. ..+-+ .....+-.++...-++ -.-...+.|..+....+...
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~p~-~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i--- 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRPS--SPLPD-AYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI--- 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S--T-TTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCcH-HHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---
Confidence 999999888788888888888888755430 10111 1112222222221111 11233445555444333222
Q ss_pred hhC----CChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHh
Q 011316 281 INH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNA 354 (488)
Q Consensus 281 ~~~----~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l 354 (488)
... +++..+-+++.++ .. -..+...|..+...- .+..+..+. .++..++.-|++. .++.++.-+..++.+
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk-~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASK-AN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-T-TC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCC-Cc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 222 3444455666665 22 245677777776632 333333333 3566666666654 556666666666666
Q ss_pred ccCCCHHHHHHHHH---CCChHHHHhhc------CCCCHHHHHHHHHHHHHHHHhh
Q 011316 355 TSGGSNEQIKFLVS---QGCIKPLCDLL------NCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 355 ~~~~~~~~~~~l~~---~~~~~~L~~ll------~~~~~~v~~~al~~L~~l~~~~ 401 (488)
+...+++..-..++ .|....+..-+ +-..+.-++.+.-++.+++...
T Consensus 271 ~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es 326 (435)
T PF03378_consen 271 AIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES 326 (435)
T ss_dssp HHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred HHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence 54444444444333 23333333311 1122333555555666665433
No 253
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.13 E-value=3.3 Score=35.29 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=92.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
=++.+++...+++..++..|+..+..++...--.+. ..+|.++.+..+++ +.++..|...+..+.+..+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHH
Confidence 467788888999999999999999998875411111 36899999999988 99999999999999886665544
Q ss_pred HHHhCCCHHHHHHhh---CCCCH-HH---HHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-------cHhHH
Q 011316 111 VVIDHGAVPIFVRLL---SSPTD-DV---REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-------KLSML 176 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL---~~~~~-~~---~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~v~ 176 (488)
.-...| +..-..+- ..+.. .. ....+..+..+...+...|..+ +..+++.+..+. .+.-.
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l 155 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDL 155 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHH
Confidence 443334 32222222 11111 11 4455666667766555555544 456666663221 23334
Q ss_pred HHHHHHHHHhhcC
Q 011316 177 RNATWTLSNFCRG 189 (488)
Q Consensus 177 ~~a~~~L~~l~~~ 189 (488)
....++..+++.-
T Consensus 156 ~~~~Fla~nLA~l 168 (187)
T PF12830_consen 156 DFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHHhcC
Confidence 4555555555544
No 254
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.03 E-value=11 Score=43.77 Aligned_cols=267 Identities=9% Similarity=0.103 Sum_probs=146.1
Q ss_pred CCCHHHHHHHHHHHhhhhCCC---chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 011316 127 SPTDDVREQAVWALGNVAGDS---PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203 (488)
Q Consensus 127 ~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 203 (488)
+.+..++..|+..|..++..- ++....-.....+.++...+....+.++++.++.++.++...... ....+.+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWk 1223 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWK 1223 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcH
Confidence 345678888888887776321 111111122346778888786777889999999999988765421 1122334
Q ss_pred HHHHhh----ccCChhHHHHHHHHHHHhccCCchhHH----HHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCC-
Q 011316 204 ALERLI----HSNDDEVLTDACWALSYLSDGTNDKIQ----AVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGD- 273 (488)
Q Consensus 204 ~L~~ll----~~~~~~v~~~al~~L~~l~~~~~~~~~----~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~- 273 (488)
.+..++ ...++.+...+..++..+....-.... ..+ ..++..+..+.... +.++-..|+..|++++..-
T Consensus 1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F-~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF-TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH-HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 444444 355788888888888876643111000 001 13445555555443 3566667777777552110
Q ss_pred --c------------------------hhhHH-----HhhCCChHHH---HHHhcccchhhHHHHHHHHHHHHhcC----
Q 011316 274 --D------------------------MQTQC-----IINHQALPCL---LDLLTQNYKKSIKKEACWTISNITAG---- 315 (488)
Q Consensus 274 --~------------------------~~~~~-----~~~~~~~~~L---~~lL~~~~~~~v~~~a~~~L~nl~~~---- 315 (488)
+ ..... .....+++.| .++..++ +.+||..|+.+|-.+...
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhcc
Confidence 0 00000 0001233333 3334555 899999999998877752
Q ss_pred -CHHHHHHHHHcCChHHHHHHHhcC------------------C-hh----HHHHHHHHHHHhccCCC--HHHHHHHHHC
Q 011316 316 -NVNQIQAIIEAGIIGPLVNLLLNA------------------E-FE----IKKEAAWAISNATSGGS--NEQIKFLVSQ 369 (488)
Q Consensus 316 -~~~~~~~l~~~~~l~~L~~ll~~~------------------~-~~----v~~~a~~aL~~l~~~~~--~~~~~~l~~~ 369 (488)
+++....++. +++-.++..++.. + .+ +...+..+|..++.--. -+....++.
T Consensus 1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076 1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3445555555 4555555555421 0 00 22333334444332110 011222222
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 370 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 370 ~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
+++..|..++..++..+......+|.+++...
T Consensus 1460 ~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1460 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 56777777778888888888888998887543
No 255
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.02 E-value=0.47 Score=42.70 Aligned_cols=142 Identities=14% Similarity=0.212 Sum_probs=96.6
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011316 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 323 (488)
+...+..|.+.++.....++..+..++...++.....+. .++-.+++-+++. ...|-+.|+.+++.+...-...+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888989999999888765544443333 3566677777888 88899999999999987433333332
Q ss_pred HHcCChHHHHH-HHhcC---ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316 324 IEAGIIGPLVN-LLLNA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 324 ~~~~~l~~L~~-ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
+..++. ++... +.-++..|-.+|..+..+..+.. ++..|...+.+.++.++..+.-++.+...
T Consensus 168 -----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 168 -----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred -----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccce
Confidence 222332 33332 45688999999999987765532 46666777788888888777666555543
Q ss_pred h
Q 011316 400 A 400 (488)
Q Consensus 400 ~ 400 (488)
.
T Consensus 235 r 235 (334)
T KOG2933|consen 235 R 235 (334)
T ss_pred e
Confidence 3
No 256
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=13 Score=38.56 Aligned_cols=295 Identities=13% Similarity=0.118 Sum_probs=135.3
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011316 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 167 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l 167 (488)
+.+...|+..|.+++. .+.....+...+++..+.+..--++-.+|.. -+.+.+.+.++.+=+.+
T Consensus 307 D~Lvs~Al~FLt~V~~-r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e---------------DeElFED~pleYiRRDl 370 (960)
T KOG1992|consen 307 DYLVSKALQFLTSVSR-RPHYAELFEGENVLAQICEKVVLPNLILREE---------------DEELFEDNPLEYIRRDL 370 (960)
T ss_pred HHHHHHHHHHHHHHHh-hhhhHhhhcchHHHHHHHHhhcccccccchh---------------hHHHhccCHHHHHHHhc
Confidence 4455666777777776 5555555555555555555432222222221 12333444455555555
Q ss_pred cccccHhH-HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-c--CChhHHHHHHHHHHHhccCCchh---------
Q 011316 168 NEHAKLSM-LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-S--NDDEVLTDACWALSYLSDGTNDK--------- 234 (488)
Q Consensus 168 ~~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~--~~~~v~~~al~~L~~l~~~~~~~--------- 234 (488)
.++|.+. |+.|+..+..|+...+..........+..++.-.. + .++.-...++.....++......
T Consensus 371 -EGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~ 449 (960)
T KOG1992|consen 371 -EGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNE 449 (960)
T ss_pred -ccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccc
Confidence 5555554 55677777888877644444344444444443222 2 23333333333333332110000
Q ss_pred ----HH------------------HHH-------------------HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316 235 ----IQ------------------AVI-------------------EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 235 ----~~------------------~~~-------------------~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 273 (488)
.. .++ -...++.++..|..++..+...|..++-.+..-.
T Consensus 450 lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 450 LVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred cccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccc
Confidence 00 000 0125677777777777777777777776665433
Q ss_pred chhhHHHhhC-CChH----HHH---HHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH----hcC-C
Q 011316 274 DMQTQCIINH-QALP----CLL---DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL----LNA-E 340 (488)
Q Consensus 274 ~~~~~~~~~~-~~~~----~L~---~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll----~~~-~ 340 (488)
+.....++.. .+.+ .+. +.++.+ ...--...+.++..+..-.++.+..... ..+..|.+++ +++ +
T Consensus 530 e~~~~~if~~~~iap~~~~ll~nLf~a~s~p-~~~EneylmKaImRii~i~~~~i~p~~~-~~l~~Lteiv~~v~KNPs~ 607 (960)
T KOG1992|consen 530 ENSNAKIFGAEDIAPFVEILLTNLFKALSLP-GKAENEYLMKAIMRIISILQSAIIPHAP-ELLRQLTEIVEEVSKNPSN 607 (960)
T ss_pred cCccccccchhhcchHHHHHHHHHHHhccCC-cccccHHHHHHHHHHHHhCHHhhhhhhh-HHHHHHHHHHHHHhcCCCC
Confidence 3311122211 1221 122 222222 1111223344444433322332211111 1233333333 233 3
Q ss_pred hhH---HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 341 FEI---KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 341 ~~v---~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
+.. --++..++.+.+...++.....+ +..+++.+..++..+-.+..-.++..+..++....
T Consensus 608 P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~ 671 (960)
T KOG1992|consen 608 PQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSS 671 (960)
T ss_pred chhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 322 23344444444444444433333 33566777777776667777777777777766544
No 257
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.95 Score=40.83 Aligned_cols=145 Identities=18% Similarity=0.196 Sum_probs=101.7
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011316 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
...+...+..|.+.++......+..+..++...++.....+. .++-.+++-+++....|...|+.+++.+.........
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555677788889999999999999998766544443443 5677778888888889999999999999875554444
Q ss_pred HHhhCCChHHHHH-Hhccc--chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316 279 CIINHQALPCLLD-LLTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 279 ~~~~~~~~~~L~~-lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
.. ++.++. ++... .+.-++..|-.+|..+..+-... .+++.|+..+++.++.++..++.+..+..
T Consensus 166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 32 233333 33221 14568888999998887742221 25777888888888889888887777665
Q ss_pred c
Q 011316 356 S 356 (488)
Q Consensus 356 ~ 356 (488)
.
T Consensus 234 ~ 234 (334)
T KOG2933|consen 234 I 234 (334)
T ss_pred e
Confidence 4
No 258
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=92.85 E-value=1.2 Score=36.88 Aligned_cols=146 Identities=10% Similarity=0.069 Sum_probs=85.2
Q ss_pred hchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh
Q 011316 199 RPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 277 (488)
Q Consensus 199 ~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 277 (488)
...++.+..+++++ ++.++..++++++.+..-++...+.+.... +.- .-...........+... .....+
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~~~-~~~~~~---- 79 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLPMM-GISPSS---- 79 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHhhc-cCCCch----
Confidence 56778888999876 699999999999999988776544222111 100 00111111222222111 111112
Q ss_pred HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316 278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
......-++..|+.+|+++.-..-...++.++.++... .......+ . .++|.+++.+...+...++....-|+.+.
T Consensus 80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~-~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-P-QVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-H-HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 22233346677888888774444455677777776642 12222222 2 38999999999877788888777777765
No 259
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.80 E-value=0.64 Score=39.60 Aligned_cols=77 Identities=10% Similarity=0.057 Sum_probs=59.5
Q ss_pred CCHHHHHHhhcC-----CCChhHHHHHHHHHHHhcCCCchhhHHHHhC--CC--HHHHHHhhCCCCHHHHHHHHHHHhhh
Q 011316 73 GVVPRFIEFLSR-----DDFPQLQFEAAWALTNIASGTSENTRVVIDH--GA--VPIFVRLLSSPTDDVREQAVWALGNV 143 (488)
Q Consensus 73 ~~i~~L~~lL~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~--i~~L~~lL~~~~~~~~~~a~~~L~~l 143 (488)
..+..|++.+.. .+...-....+.+|.|++. .++.|..+.+. +. +..|+.++++.+..-|..++.+|.|+
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence 456677777654 1213455677889999999 89999999855 34 78888888888888899999999999
Q ss_pred hCCCchh
Q 011316 144 AGDSPKC 150 (488)
Q Consensus 144 ~~~~~~~ 150 (488)
|.+....
T Consensus 131 cFd~~~H 137 (192)
T PF04063_consen 131 CFDTDSH 137 (192)
T ss_pred hccHhHH
Confidence 9887643
No 260
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.71 E-value=0.47 Score=34.91 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=58.5
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316 286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 365 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 365 (488)
+...+..+.++ .+.+|..++..|..+..... ....-..+++..+...++++|+-|-.+|..+|..++..........
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 45567777888 88899999999999998544 1112224578888889999999999999999999997654434333
No 261
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=92.69 E-value=2 Score=50.40 Aligned_cols=268 Identities=14% Similarity=0.164 Sum_probs=151.4
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCC--ccHHH-H-HHcCCHHHHHHhh-cCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011316 39 VWSDDRNIQLDATTQFRKLLSIERS--PPINE-V-IQSGVVPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVI 113 (488)
Q Consensus 39 L~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~-~-~~~~~i~~L~~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 113 (488)
+..++++++..+...+..++..... +.... + .....+..+..+- .+++ +.++......+. ...-....
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~la 562 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQLA 562 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhhc
Confidence 3468888888887777776654311 00000 0 0112233333332 2344 666655444443 23333455
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011316 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193 (488)
Q Consensus 114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~ 193 (488)
+.+.+..+...++.+.-.++..+...+++++..+|...-..+....+..+-.+- .+.-..+...+..-+..+....+.-
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~-~sg~~r~~~~~a~~~~~~i~~~~~~ 641 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELE-FSGMARTKEESAKLLCELIISSPVL 641 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhh-hcchHHhHHHHHHHhhHHHHHHHHH
Confidence 566677777778888889999999999999987663221111111111111111 1111111111111111111111112
Q ss_pred ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcC
Q 011316 194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTG 272 (488)
Q Consensus 194 ~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~ 272 (488)
........+..++..+.+++..+...++.+++.|+...........+ ..++.+.+.+.. .+..-+..++++++++...
T Consensus 642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 22233455667777788888889999999999999776644554555 566666666644 4566788899999999885
Q ss_pred CchhhHHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011316 273 DDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 315 (488)
Q Consensus 273 ~~~~~~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 315 (488)
......... ...++..+...+.......+|.++...++++...
T Consensus 721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 543222222 2345666777777776778888888888877653
No 262
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.66 E-value=0.87 Score=37.92 Aligned_cols=115 Identities=19% Similarity=0.148 Sum_probs=79.3
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc---CCHH
Q 011316 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVN 318 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~ 318 (488)
.....+..+|.++++.-|..++..+...+..++...-.---...+..++.+|+.++...+++.++.++..+.. +.++
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5567788899998999999999999888876532111011235788899999888677889999999988875 4455
Q ss_pred HHHHHHHc---CChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316 319 QIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 319 ~~~~l~~~---~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
..+.+... ++++.++.+++. ......++.+|..+....
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 55554432 345555555554 456677888888777543
No 263
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.52 E-value=0.65 Score=37.55 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=63.5
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~ 449 (488)
++..|..-+.++++.++..++..|..+++.+... |...+.+.+.++.|..+... .+++|+++...++.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~-----------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~ 106 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR-----------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK 106 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 5677777788899999999999999999877643 67777778888889998777 78999999999999
Q ss_pred HhcCCCCC
Q 011316 450 TYWVEEDE 457 (488)
Q Consensus 450 ~~~~~~~~ 457 (488)
.+......
T Consensus 107 ~W~~~f~~ 114 (144)
T cd03568 107 QWADEFKN 114 (144)
T ss_pred HHHHHhCC
Confidence 98776654
No 264
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.30 E-value=2.1 Score=39.01 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=97.4
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC--CHHHHHHhhCC----CCHHHHHHHHHHHhhhhCCCc
Q 011316 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSS----PTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~----~~~~~~~~a~~~L~~l~~~~~ 148 (488)
...+.+.+.+-. ++.+.-++..+.-++. ++.....+...+ +...+..++.. ..+..+-.++++++|+..+..
T Consensus 65 ~~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~ 142 (268)
T PF08324_consen 65 LILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP 142 (268)
T ss_dssp HHHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc
Confidence 455556666554 4567778888877777 666666555443 24445544433 578889999999999987765
Q ss_pred hhHHHHHhcC--ChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc-c-CChhHHHH
Q 011316 149 KCRDLVLSNG--ALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH-S-NDDEVLTD 219 (488)
Q Consensus 149 ~~~~~~~~~~--~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll~-~-~~~~v~~~ 219 (488)
. +..+.... .+...+..+..+. +..++..++..+.|++-.. ...........+..+.+.+. . .++++...
T Consensus 143 ~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 143 G-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp C-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred c-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 4 45544432 2333333332222 6788888888888887543 11122233345666777433 2 58999999
Q ss_pred HHHHHHHhccCCchh
Q 011316 220 ACWALSYLSDGTNDK 234 (488)
Q Consensus 220 al~~L~~l~~~~~~~ 234 (488)
++-+++++...++..
T Consensus 222 ~LvAlGtL~~~~~~~ 236 (268)
T PF08324_consen 222 LLVALGTLLSSSDSA 236 (268)
T ss_dssp HHHHHHHHHCCSHHH
T ss_pred HHHHHHHHhccChhH
Confidence 999999999665443
No 265
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.29 E-value=5.8 Score=40.78 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=95.1
Q ss_pred CHHHHHHhhCC----CCHHHHHHHHHHHhhhhC----CCchhHHHHHhcCChHHHHHHhcc---cccHhHHHHHHHHHHH
Q 011316 117 AVPIFVRLLSS----PTDDVREQAVWALGNVAG----DSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSN 185 (488)
Q Consensus 117 ~i~~L~~lL~~----~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~v~~~a~~~L~~ 185 (488)
.+..+..++.+ ..+.++..|+-+++.+.. +.+.+. .......++.+...+.. ..+...+..++.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 35666677765 456788888888887752 222211 11112345566655532 2345556677888888
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhc-c--CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHh
Q 011316 186 FCRGKPQPLFEQTRPALPALERLIH-S--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLI 260 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~L~~ll~-~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~ 260 (488)
+... ..++.+..++. + ....++..|+++|..++...+...+ +.++.+..+ .++++|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHH
Confidence 7654 35555666665 2 2467999999999988765543322 556666654 4577888
Q ss_pred HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHH
Q 011316 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 305 (488)
Q Consensus 261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a 305 (488)
.|+..|... +|.. ..+..+...+....+..|+...
T Consensus 535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHh
Confidence 887766442 2322 2355666666665456555443
No 266
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.26 E-value=13 Score=36.97 Aligned_cols=106 Identities=20% Similarity=0.294 Sum_probs=77.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.+..+++.+.+++..+|..++..|+.+... -..++...-+|.+..|.+-+-+.. +.+|..|+.+|+.+-.......
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccCChH
Confidence 6777888888999999999999999986543 344666677788888887777777 7999999999998876322221
Q ss_pred HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCC
Q 011316 110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGD 146 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~ 146 (488)
. .+...|+..++. ++.++|+.|+ .|+..+
T Consensus 168 n-----~~~n~l~~~vqnDPS~EVRr~al---lni~vd 197 (885)
T COG5218 168 N-----RIVNLLKDIVQNDPSDEVRRLAL---LNISVD 197 (885)
T ss_pred H-----HHHHHHHHHHhcCcHHHHHHHHH---HHeeeC
Confidence 1 224566666665 7889998754 455433
No 267
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=92.24 E-value=18 Score=38.45 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=74.2
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 407 (488)
+...+...+..++..+....+.++.++..-......+ ...-.+.-..-.+..-..+......+|.++....+..
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~--- 515 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSH--- 515 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---
Confidence 4556666677777778888888888876432111000 0011111111111111234455556666665554433
Q ss_pred CCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011316 408 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE 459 (488)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 459 (488)
....+.+.+....+-.++=++++++++.|..++...|+.+...|
T Consensus 516 --------L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e 559 (727)
T PF12726_consen 516 --------LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLE 559 (727)
T ss_pred --------HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHH
Confidence 57888888999999999999999999999999999998666544
No 268
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=92.17 E-value=2.8 Score=32.58 Aligned_cols=97 Identities=13% Similarity=0.195 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHH
Q 011316 342 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 421 (488)
Q Consensus 342 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 421 (488)
..-.....=|++++.. ++..... +++.|.+-|++.++.|...+|.+|..++..+... |+..+.
T Consensus 16 p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-----------f~~~~~ 78 (122)
T cd03572 16 PTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-----------FKRELQ 78 (122)
T ss_pred CCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------HHHHHH
Confidence 3334445555666654 2232333 5788888889889999999999999999887633 444443
Q ss_pred -hhccHHHHHHhhcC--------CCHHHHHHHHHHHHHhcCCC
Q 011316 422 -DAEGLEKIENLQSH--------DNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 422 -~~g~~~~l~~l~~~--------~~~~v~~~a~~~l~~~~~~~ 455 (488)
....++.+.++... .+..|+..|..+++-+|+++
T Consensus 79 ~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 79 RNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 44456667776552 35679999999999999875
No 269
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=92.14 E-value=14 Score=37.10 Aligned_cols=160 Identities=15% Similarity=0.028 Sum_probs=93.4
Q ss_pred ChHHHHHHhccc-chhhHHHHHHHHH---HHHhcC-CHHH---HHHHHHcCChHHHHH----HHhcCChhHHHHHHHHHH
Q 011316 285 ALPCLLDLLTQN-YKKSIKKEACWTI---SNITAG-NVNQ---IQAIIEAGIIGPLVN----LLLNAEFEIKKEAAWAIS 352 (488)
Q Consensus 285 ~~~~L~~lL~~~-~~~~v~~~a~~~L---~nl~~~-~~~~---~~~l~~~~~l~~L~~----ll~~~~~~v~~~a~~aL~ 352 (488)
++..+..-+.+. .+.++|..++..+ .....+ .+.. ....+..++.+.+-. --...+...|..+..+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 333444444332 1456666666666 544442 2332 233444566665510 011236789999999999
Q ss_pred HhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh
Q 011316 353 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL 432 (488)
Q Consensus 353 ~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l 432 (488)
.++.....-... +-+++..|.+-|+.++++++..+-++|..+...-...... ...-........+...
T Consensus 400 ~L~~~~p~l~~~---d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~---------~~~~~~~~~~~l~~~~ 467 (501)
T PF13001_consen 400 LLAKRAPSLFSK---DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD---------EDEQKRLLLELLLLSY 467 (501)
T ss_pred HHHccCcccccc---cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHHHHHhh
Confidence 999865332211 2357888888888889999999999999887654432210 0000000001122233
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCCC
Q 011316 433 QSHDNTEIYEKAVKILETYWVEED 456 (488)
Q Consensus 433 ~~~~~~~v~~~a~~~l~~~~~~~~ 456 (488)
..+....++..|.+..+++|+.++
T Consensus 468 ~~~~~~~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 468 IQSEVRSCRYAAVKYANACFPFSD 491 (501)
T ss_pred ccchhHHHHHHHHHHHHHhCCccc
Confidence 345566789999999999998765
No 270
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.99 E-value=0.89 Score=36.67 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=62.6
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l~ 449 (488)
++..|..-+.++++.++..|+..|..+++.+... |...+.+.+.++.+..+.. ..+++|++++..++.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~ 110 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH-----------FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ 110 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 5777778888899999999999999998875432 5677777888888888865 678999999999999
Q ss_pred HhcCCCCCC
Q 011316 450 TYWVEEDED 458 (488)
Q Consensus 450 ~~~~~~~~~ 458 (488)
.+...-..+
T Consensus 111 ~W~~~f~~~ 119 (142)
T cd03569 111 AWALAFRNK 119 (142)
T ss_pred HHHHHhCCC
Confidence 988765543
No 271
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.90 E-value=20 Score=38.49 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=39.3
Q ss_pred hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011316 124 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 183 (488)
Q Consensus 124 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L 183 (488)
+|++++.+++...+..+..+...+++.-..+-+...++.++..+ ......++...+..|
T Consensus 475 FLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnm-egfPsslqvkiLkil 533 (2799)
T KOG1788|consen 475 FLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNM-EGFPSSLQVKILKIL 533 (2799)
T ss_pred HHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhh-cCCChHHHHHHHHHH
Confidence 46678888888888888888877777666666666677777666 333334444444433
No 272
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=91.86 E-value=0.66 Score=37.49 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=63.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
+.+..|.+-|++.++.+++.|+..|-.++.+-+......+....++..|++++.....+.++..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999998877556677888889999999999884448999999999888765
No 273
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=91.83 E-value=0.66 Score=37.43 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=62.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
+.+..|.+-|++.++.+++.|+..|-.++.+-+......+...+++..|++++.....+.++..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999988875555677777889999999999864448999999988887765
No 274
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=91.81 E-value=9.6 Score=34.41 Aligned_cols=176 Identities=18% Similarity=0.169 Sum_probs=99.6
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC-------CchhhHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHh
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-------TSENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALG 141 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~g~i~~L~~lL~~~~----~~~~~~a~~~L~ 141 (488)
|+-+.+.+-+.++. ....++..+..++.- ..+.|-.+.-.+.+|.++.-+.+++ ......++..|+
T Consensus 64 Glq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La 140 (262)
T PF14225_consen 64 GLQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALA 140 (262)
T ss_pred hHHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 33344444455544 345566666666541 1223333333345677777776655 234456667888
Q ss_pred hhhCCCchhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHH
Q 011316 142 NVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 218 (488)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~ 218 (488)
.+|..... ..+..++....+.. ..+....++..|+.-.. | ......+..++.++.++-..++.
T Consensus 141 ~~a~~~~~--------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 141 QVAEAQGL--------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHhCCC--------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHH
Confidence 88743221 23444444442222 23344444444443221 1 12345677788999999899999
Q ss_pred HHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011316 219 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270 (488)
Q Consensus 219 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 270 (488)
..+.+|..+....+-... ...+++..+.+++..+. -..|+.+|-...
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 999999999876543322 44468888899987765 444555554443
No 275
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=91.61 E-value=13 Score=35.67 Aligned_cols=307 Identities=14% Similarity=0.130 Sum_probs=157.0
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCc-cHHHHHHcCCHHHHHHhhc----C------CCChhHHHHHHHHHHHhcCCCchh
Q 011316 40 WSDDRNIQLDATTQFRKLLSIERSP-PINEVIQSGVVPRFIEFLS----R------DDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 40 ~s~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~i~~L~~lL~----~------~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.+++..-|..|-..|.+.+...+.. ..+.+. .-++.+.+.++ + +.+.++..+|+++++.+.. +++.
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i 79 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEI 79 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHH
Confidence 3455566666777777766544222 222222 23444444432 2 1125788999999999987 6665
Q ss_pred hHHHHhCC---CHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---c-cccHhHHHHH
Q 011316 109 TRVVIDHG---AVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---E-HAKLSMLRNA 179 (488)
Q Consensus 109 ~~~~~~~g---~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~-~~~~~v~~~a 179 (488)
...+-..- ++...+..+.+ .+..+....+|+|..=-.. ..++....+..++..+. + -.+..+....
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~l~~~l~~i~~~~~s~si~~er 154 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVERLLAALHNIKNRFPSKSIISER 154 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHHHHHHHHHhhccCCchhHHHHH
Confidence 55443322 34555555544 4567777788877753222 12333344455555442 1 3456777888
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc---hhHHH---HHHh----C-----CH
Q 011316 180 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN---DKIQA---VIEA----G-----VC 244 (488)
Q Consensus 180 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~---~~~~~---~~~~----~-----~l 244 (488)
+.++.++....+..-......-++.++..+-+....++..|..++..+...-+ ...+. ..+. + +.
T Consensus 155 L~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 234 (372)
T PF12231_consen 155 LNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYC 234 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHH
Confidence 88888888775443333344567777777767777777776665555442111 11111 1111 1 22
Q ss_pred HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc---CCHHHHH
Q 011316 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQIQ 321 (488)
Q Consensus 245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~ 321 (488)
+.+..++.+++......-+|...-+.-+++.....-.-...+...-..++++ ++.+|..|..+=..+.. .+.....
T Consensus 235 ~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k~~A~~aW~~liy~~~~~~~~~~ 313 (372)
T PF12231_consen 235 ERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSS-DPQVKIQAFKAWRRLIYASNPNELTSP 313 (372)
T ss_pred HHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhcCCccccH
Confidence 3355555553333333333332222222221111111123455555566777 88899888876555544 2222222
Q ss_pred HHHHcCChHHHHHHHhcC-Ch----hHHHHHHHHHHHhcc
Q 011316 322 AIIEAGIIGPLVNLLLNA-EF----EIKKEAAWAISNATS 356 (488)
Q Consensus 322 ~l~~~~~l~~L~~ll~~~-~~----~v~~~a~~aL~~l~~ 356 (488)
..+.. +..++...+... .. +++..++..++++..
T Consensus 314 k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 314 KRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 22221 223333334333 23 566677777776653
No 276
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=91.48 E-value=0.97 Score=36.23 Aligned_cols=72 Identities=10% Similarity=-0.001 Sum_probs=61.0
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHH
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILK 399 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~~ 399 (488)
++..+.+-++++++.++..|+..|-.++.++.......+.+.+++..|++++.. .+..|+..++..+..-..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 566777888899999999999999999999998888888888999999999853 567899998888776543
No 277
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.23 E-value=2.3 Score=44.21 Aligned_cols=167 Identities=18% Similarity=0.148 Sum_probs=88.6
Q ss_pred chHHHHHHhhccCChhH--HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC----CCcchHhHHHHHHhHhhcCC
Q 011316 200 PALPALERLIHSNDDEV--LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 200 ~~~~~L~~ll~~~~~~v--~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~ 273 (488)
..+..+.+++.+.+..- ....+..+......+. . ..+..+..+++. .++.++..|+-+++.+....
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt---~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT---E-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT--------H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC---H-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 45666777776643222 2222222222222221 1 334455555544 34567777877777776522
Q ss_pred chh---------hHHHhhCCChHHHHHHhcc---cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--
Q 011316 274 DMQ---------TQCIINHQALPCLLDLLTQ---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-- 339 (488)
Q Consensus 274 ~~~---------~~~~~~~~~~~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-- 339 (488)
... ........+++.+...+.. ..+..-+..++.+|+|+... ..++.|..++...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~ 535 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEE 535 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccc
Confidence 111 0112223566667766652 22557788899999999542 2566666666665
Q ss_pred -ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC--CCCHHHHHHHHHHH
Q 011316 340 -EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN--CPDPRIVTVCLEGL 394 (488)
Q Consensus 340 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~--~~~~~v~~~al~~L 394 (488)
...+|..|+++|..++....... .+.|..++. ..+.++|..|...|
T Consensus 536 ~~~~~R~~Ai~Alr~~~~~~~~~v---------~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 536 VPHFIRVAAIQALRRLAKHCPEKV---------REILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp S-HHHHHHHHHTTTTGGGT-HHHH---------HHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhcCcHHH---------HHHHHHHhcCCCCChhHHHHHHHHH
Confidence 67899999999999976543222 334444444 34678887776433
No 278
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.69 E-value=1 Score=35.93 Aligned_cols=74 Identities=9% Similarity=0.021 Sum_probs=60.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChh-HHHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ-LQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~-v~~~a~~~L~~l~~ 103 (488)
..+..|.+-|++.++.+++.|+..|-.++.+-+......+....++..|.+++.+..... ++..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999888765556677778889999999998765434 88888888877665
No 279
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.51 E-value=2 Score=36.89 Aligned_cols=146 Identities=12% Similarity=0.196 Sum_probs=87.3
Q ss_pred CCHHHHHH-HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC---C-CChhHHHHHHHHHHHhcC-CCchhhHHHHhC
Q 011316 42 DDRNIQLD-ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR---D-DFPQLQFEAAWALTNIAS-GTSENTRVVIDH 115 (488)
Q Consensus 42 ~~~~~~~~-a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~---~-~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~ 115 (488)
+...-|.. |+..|..+++ + ++....+.+..+--.+...|.. + ..+.+|..++.+++.+.. ++++....+...
T Consensus 111 ~~~snRvcnaL~lLQclaS-h-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltT 188 (315)
T COG5209 111 ERESNRVCNALNLLQCLAS-H-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTT 188 (315)
T ss_pred chhhhHHHHHHHHHHHHhc-C-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhh
Confidence 33344444 4444444444 3 4544444444332223334432 2 125689999999999998 445666777788
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-------CChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-------GALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 116 g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-------~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
.++|..++.++.+++--+..++.++..+..++...+...... ..+..++..+-......+...++.+-..++.
T Consensus 189 eivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 189 EIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 999999999999999999999999999887776543322111 1122233333233444555666666555555
Q ss_pred C
Q 011316 189 G 189 (488)
Q Consensus 189 ~ 189 (488)
.
T Consensus 269 ~ 269 (315)
T COG5209 269 K 269 (315)
T ss_pred C
Confidence 4
No 280
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.45 E-value=6.2 Score=32.85 Aligned_cols=113 Identities=16% Similarity=0.194 Sum_probs=71.4
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC--CCHHHHHHhhCC-CCHHHHHHHHHHHhhhh---CC
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSS-PTDDVREQAVWALGNVA---GD 146 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~---~~ 146 (488)
..+..+.++|++++ +.-|-.++..+..++..++ .+.+.+. ..+..++..++. +++.+.+.++.++..+. .+
T Consensus 25 ~l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35667788899988 7888888888888877432 2333333 367888888887 56778888888888875 44
Q ss_pred CchhHHHHHhcC---ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011316 147 SPKCRDLVLSNG---ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 147 ~~~~~~~~~~~~---~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 191 (488)
.|+....+.... +++.++.++ + +......++.+|..+....+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~-~--~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLL-Q--DSSCPETALDALATLLPHHP 146 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHH-h--ccccHHHHHHHHHHHHHHCC
Confidence 455443333222 233344444 1 14566677777777666543
No 281
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.05 E-value=41 Score=38.68 Aligned_cols=273 Identities=15% Similarity=0.132 Sum_probs=140.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChh
Q 011316 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFE 196 (488)
Q Consensus 118 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~ 196 (488)
+..+...+...++..+-.+..+++.++...+.. ..+ ....+..+..+....|+-.|.--..++..+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-chH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 344455566678888888888888887544321 111 1245566667755566666666666677766655 334444
Q ss_pred hhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC---cchHhHHHHH-------
Q 011316 197 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIPALRT------- 265 (488)
Q Consensus 197 ~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~~------- 265 (488)
.....+..+..+-++. .+.|+..++.++..+...........++ ..+..+..+|-+.. .++...--++
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 5566677777777765 5699999999999988665544443333 33344444443321 1222111111
Q ss_pred ------HhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011316 266 ------VGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 338 (488)
Q Consensus 266 ------L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~ 338 (488)
++.=...+.. ....-.....+-...-++.++ ++.++.++..++.++-.-.+.... -.-+++.|+.++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence 1111111111 000111111222222334445 788888888888877653222111 01246666666666
Q ss_pred CChhHHHHHHHHHHHhccCCCHHH---HHHHH---------------HCCChHHHHhhcC-CCCHHHHHHHHHHHHHHH
Q 011316 339 AEFEIKKEAAWAISNATSGGSNEQ---IKFLV---------------SQGCIKPLCDLLN-CPDPRIVTVCLEGLENIL 398 (488)
Q Consensus 339 ~~~~v~~~a~~aL~~l~~~~~~~~---~~~l~---------------~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~ 398 (488)
...-.|.....++..+......+. ...+. +.|+--.+..+++ ..|.+........+.+++
T Consensus 1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 544444444444444443221110 11111 3344444555555 345566666666666643
No 282
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=89.96 E-value=8.2 Score=40.17 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=109.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..|..|+..|.|.+..+...+-..+...+..+ .+. -++..|+...-+.++ ..++.+|..+- .|..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~-------~l~~~l~~y~~~t~s----~~~~~il~~~~--~P~~K 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSD-REP-------WLVNGLVDYYLSTNS----QRALEILVGVQ--EPHDK 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chH-------HHHHHHHHHHhhcCc----HHHHHHHHhcC--CccHH
Confidence 35677999999999888888888888876654 222 135556665433332 34555665443 23222
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
. ++..|-..+.. +..|-.++..|+.+....|..-..+.+...+..|++.|..+.+..+...|+.+|..|.-.
T Consensus 70 ~------~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 70 H------LFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred H------HHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 2 34556666654 577888999999999887777788888899999999998888999999999999988766
Q ss_pred CCCCChhhhhchHHHHHHhh
Q 011316 190 KPQPLFEQTRPALPALERLI 209 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~ll 209 (488)
.+.........++.....++
T Consensus 142 ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 142 IPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccchhhHHHHHHHHHHHHHH
Confidence 55544444555555555555
No 283
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=89.88 E-value=1.9 Score=34.44 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=59.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC--CChhHHHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~v~~~a~~~L~~l~~ 103 (488)
..+..|.+-|+++++.+++.|+..|-.+..+.+......+....++..|++++... ..+.++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999988876444556666668888899999763 337899999998887765
No 284
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=89.67 E-value=3.1 Score=30.96 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=57.0
Q ss_pred HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHH
Q 011316 368 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 447 (488)
Q Consensus 368 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~ 447 (488)
....+..|++.+..++......++..+..+++... ....+.+.|+.+-+.++....+++.+.....+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34567888888888888788899999999877665 36778889999999999988888888888777
Q ss_pred HHH
Q 011316 448 LET 450 (488)
Q Consensus 448 l~~ 450 (488)
++.
T Consensus 95 l~~ 97 (98)
T PF14726_consen 95 LDQ 97 (98)
T ss_pred Hhc
Confidence 764
No 285
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=89.67 E-value=2.5 Score=33.93 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=60.0
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC------CCHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKA 444 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~a 444 (488)
++..|..-+.++++.++..|+..|..+++.+... |...+.+.+.+..+..+... .+++|+++.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~-----------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~ki 107 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGER-----------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKI 107 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence 5677778888999999999999999998876543 56777777778778888742 578999999
Q ss_pred HHHHHHhcCCCC
Q 011316 445 VKILETYWVEED 456 (488)
Q Consensus 445 ~~~l~~~~~~~~ 456 (488)
..++..+-..-.
T Consensus 108 l~li~~W~~~f~ 119 (139)
T cd03567 108 IELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHHHhc
Confidence 999998776544
No 286
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.21 E-value=22 Score=37.37 Aligned_cols=175 Identities=14% Similarity=0.073 Sum_probs=99.4
Q ss_pred hHHHhhCCChHHHHHHhcccch-------hhHHHHHHHHHHHHhcCCHHHHHHHHH--------cCChHHHHHHHhc---
Q 011316 277 TQCIINHQALPCLLDLLTQNYK-------KSIKKEACWTISNITAGNVNQIQAIIE--------AGIIGPLVNLLLN--- 338 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~-------~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~l~~L~~ll~~--- 338 (488)
...+.+.+.+..++.+.+.+.+ .+....|+.+|+-+..- ++....+.. ...+..++..-..
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 4445567778888887765433 33455666666655543 333333332 1133333333222
Q ss_pred -CChhHHHHHHHHHHHhccCCC------------------------------HH----HHHHHHHCCChHHHHhhcCCCC
Q 011316 339 -AEFEIKKEAAWAISNATSGGS------------------------------NE----QIKFLVSQGCIKPLCDLLNCPD 383 (488)
Q Consensus 339 -~~~~v~~~a~~aL~~l~~~~~------------------------------~~----~~~~l~~~~~~~~L~~ll~~~~ 383 (488)
.|+++++.|+.++.|+..... .. ....+...+++..|+++|.-..
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 278999999999999876430 00 1112224688999999988544
Q ss_pred -----HHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc--HHHHHHhhc------CC--CHHHHHHHHHHH
Q 011316 384 -----PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG--LEKIENLQS------HD--NTEIYEKAVKIL 448 (488)
Q Consensus 384 -----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~l~~l~~------~~--~~~v~~~a~~~l 448 (488)
..++..|+.+|.-+..... +++++...-. -..++.++. +. +-..-..|..+|
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~t-------------VrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll 819 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDT-------------VRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALL 819 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcH-------------HHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHH
Confidence 3578888888877765544 2333332221 123344432 22 233446788889
Q ss_pred HHhcCCCCCCCCCCCCC
Q 011316 449 ETYWVEEDEDEPLPPGD 465 (488)
Q Consensus 449 ~~~~~~~~~~~~~~~~~ 465 (488)
++.+...-++..-|++-
T Consensus 820 ~~~~g~~lp~~~g~~~~ 836 (1516)
T KOG1832|consen 820 KEAQGTPLPSSAGPSSI 836 (1516)
T ss_pred HHHhCCcCccccCcchh
Confidence 88888766666555543
No 287
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.14 E-value=2.1 Score=34.10 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=60.7
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-C-HHHHHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-N-TEIYEKAVKIL 448 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~-~~v~~~a~~~l 448 (488)
++..|..-+.++++.++..|+..|..+++.+... |...+.+.+.++.|..+..++ + +.|++++..++
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~-----------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li 106 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK-----------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELI 106 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4667778888999999999999999998876532 677777888888888886553 3 44999999999
Q ss_pred HHhcCCCCCC
Q 011316 449 ETYWVEEDED 458 (488)
Q Consensus 449 ~~~~~~~~~~ 458 (488)
..+...-..+
T Consensus 107 ~~W~~~f~~~ 116 (133)
T smart00288 107 QEWADAFKND 116 (133)
T ss_pred HHHHHHHcCC
Confidence 9888766553
No 288
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.90 E-value=30 Score=35.42 Aligned_cols=113 Identities=11% Similarity=0.053 Sum_probs=78.8
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhcC---CHHHHHHHHH--cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCH
Q 011316 286 LPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAIIE--AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~--~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 360 (488)
+..+..+|++. +...|.....+.+|+..+ +++.....-+ ...+..|.+-+.+..+-+|.+|+.++..+..-...
T Consensus 301 ~~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence 56788899988 888998888899999873 2222111111 22566666666777899999999999988764321
Q ss_pred HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 361 EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 361 ~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
-..+ ...+.+...+.+.+....||..++..+..++..-+
T Consensus 380 ~~~~---r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 380 TVGR---RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ccch---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 1111 11356677778888889999999999999987644
No 289
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=88.63 E-value=4 Score=32.50 Aligned_cols=74 Identities=8% Similarity=-0.022 Sum_probs=61.7
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhh
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~---~~~~v~~~al~~L~~l~~~~ 401 (488)
++..|..-++++++.++..|+..|-.++.++.......+.....+..|..++.. .++.|+..++..+.......
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 567778888899999999999999999999988788888777888889998875 46789999988887765443
No 290
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.33 E-value=35 Score=35.61 Aligned_cols=399 Identities=13% Similarity=0.156 Sum_probs=195.6
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHhccC---CCccHHHHHHc--CCH-HHHHHhhcCCCChhHHHHHHHHHHHhcCCC
Q 011316 34 AMVAGVWSD--DRNIQLDATTQFRKLLSIE---RSPPINEVIQS--GVV-PRFIEFLSRDDFPQLQFEAAWALTNIASGT 105 (488)
Q Consensus 34 ~l~~~L~s~--~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~--~~i-~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~ 105 (488)
.++..+.++ ++.+|..|+..+.+.+..+ ..+....+.+. ..+ ..++.++-+.. ..+|.+--.+++-++..+
T Consensus 41 ~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~D 119 (960)
T KOG1992|consen 41 LLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKRD 119 (960)
T ss_pred HHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhccc
Confidence 456666553 6899999999999988743 11111222211 122 33455555555 689999889999998633
Q ss_pred -chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhC-CCchhHH--HHHh----c-CChHHHHHHhcc-------
Q 011316 106 -SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRD--LVLS----N-GALMPLLAQFNE------- 169 (488)
Q Consensus 106 -~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~-~~~~~~~--~~~~----~-~~i~~l~~~l~~------- 169 (488)
|+....+ ++.|+.-+++.|-......+.+-..+.. ..+.+|. ...+ . ..-.++..++.+
T Consensus 120 FP~kWptL-----l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 120 FPDKWPTL-----LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQR 194 (960)
T ss_pred cchhhHHH-----HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhh
Confidence 5554433 5777777777666655555554444431 1111111 0000 0 112233333311
Q ss_pred -cccHh-------HHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCC-------------hhHHHHHHHHHHHh
Q 011316 170 -HAKLS-------MLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSND-------------DEVLTDACWALSYL 227 (488)
Q Consensus 170 -~~~~~-------v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~-------------~~v~~~al~~L~~l 227 (488)
.++.. +..-.+.....|...+ |.--.......++...++++.++ ..++...|..+.-.
T Consensus 195 ~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY 274 (960)
T KOG1992|consen 195 HANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLY 274 (960)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHH
Confidence 11222 1112222233333322 22222233456666666665222 23455666666655
Q ss_pred ccCCchhHHHHHHhCCHHHHHHhcCCCC-----cchHhHHHHHHhHhhcCCc--------------------------hh
Q 011316 228 SDGTNDKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDD--------------------------MQ 276 (488)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~--------------------------~~ 276 (488)
+...++..+.++. .++...-.+|.+-. +.....|+..|.+.+.... ..
T Consensus 275 ~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~e 353 (960)
T KOG1992|consen 275 ATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREE 353 (960)
T ss_pred HHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchh
Confidence 5555555453333 33434444444322 2344456666666665211 11
Q ss_pred hHHHhhCCChHHHHHHhcccchhhH-HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH-HHhc--CChhHHHHHHHHHH
Q 011316 277 TQCIINHQALPCLLDLLTQNYKKSI-KKEACWTISNITAGNVNQIQAIIEAGIIGPLVN-LLLN--AEFEIKKEAAWAIS 352 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~-ll~~--~~~~v~~~a~~aL~ 352 (488)
-..+++.+.++.+-+-|... +.+. |+.|+..+..|+...+.....++.. -+..++. ...+ .++.-+..+.....
T Consensus 354 DeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~t 431 (960)
T KOG1992|consen 354 DEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVT 431 (960)
T ss_pred hHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhH
Confidence 12333455666676667666 5444 4567777778877654444444332 2232332 2222 26666777777777
Q ss_pred HhccCCCHHHHHHHHH---CCChHHHH-----hhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHH
Q 011316 353 NATSGGSNEQIKFLVS---QGCIKPLC-----DLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 421 (488)
Q Consensus 353 ~l~~~~~~~~~~~l~~---~~~~~~L~-----~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~ 421 (488)
.++..+.......... .++++.+. ++.. .+.+-++..+++- +...-... -...+.
T Consensus 432 alaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy---~~~FR~ql-----------~~~~lm 497 (960)
T KOG1992|consen 432 ALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKY---IYTFRNQL-----------GKEHLM 497 (960)
T ss_pred HHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccce---eeeecccC-----------ChHHHH
Confidence 7776542111000000 01111111 1112 1222233222222 21111110 022222
Q ss_pred hhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011316 422 DAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE 457 (488)
Q Consensus 422 ~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 457 (488)
..+..+..++..++.-|...|+..+++++.-.+.
T Consensus 498 --~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 498 --ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred --HHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 2367788888898999999999999999887666
No 291
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=88.04 E-value=5.3 Score=31.07 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC-CChHHHHhhcCCCC--
Q 011316 307 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPD-- 383 (488)
Q Consensus 307 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~~~~L~~ll~~~~-- 383 (488)
.=|++++..++..... ++..|.+-|++.++.|+.+++.+|..++..+++.....+... ..+..+.+.-..+|
T Consensus 23 ~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~ 97 (122)
T cd03572 23 EEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPL 97 (122)
T ss_pred HHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcc
Confidence 3445555554443332 567788888988999999999999999999987777776543 33444443322222
Q ss_pred ------HHHHHHHHHHHHHHHH
Q 011316 384 ------PRIVTVCLEGLENILK 399 (488)
Q Consensus 384 ------~~v~~~al~~L~~l~~ 399 (488)
..||..|-+++..++.
T Consensus 98 ~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 98 KGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cCcchhHHHHHHHHHHHHHHhc
Confidence 3577777777776654
No 292
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=87.82 E-value=6.3 Score=36.16 Aligned_cols=140 Identities=11% Similarity=0.146 Sum_probs=81.6
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-HHHHhCCCHHHHHH----hhC--------CCCHHHHHHHHHH
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHGAVPIFVR----LLS--------SPTDDVREQAVWA 139 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----lL~--------~~~~~~~~~a~~~ 139 (488)
=++|.++.++.+.+ +.+|..++.+|..+....+... ..+...|..+.+-. ++. .++..+...+..+
T Consensus 119 liiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 36899999999998 9999999999999998444333 23556665554443 333 2456677778888
Q ss_pred HhhhhCC---C-chhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC
Q 011316 140 LGNVAGD---S-PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN 212 (488)
Q Consensus 140 L~~l~~~---~-~~~~~~~~~~~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~ 212 (488)
+..++.. . ...+......-.-+.++..+.... .+.++...+..+..+...-..........+++.+.+.++++
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 8777431 1 111111111111122333332222 36666666666666655433344445566777777766654
Q ss_pred C
Q 011316 213 D 213 (488)
Q Consensus 213 ~ 213 (488)
+
T Consensus 278 f 278 (282)
T PF10521_consen 278 F 278 (282)
T ss_pred C
Confidence 3
No 293
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=87.24 E-value=3.5 Score=39.93 Aligned_cols=143 Identities=11% Similarity=0.119 Sum_probs=79.9
Q ss_pred CChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCH
Q 011316 284 QALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 284 ~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 360 (488)
.+...|..+|.... ++.+|...+.+|.-|-..+.- .-..++..++.++..++...|.-+..-+.....+.+.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i-----~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNLI-----VAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCcC-----CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 45566777775542 577888888777766442111 1123566677777777777776555444433332211
Q ss_pred HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHH
Q 011316 361 EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440 (488)
Q Consensus 361 ~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v 440 (488)
.....=....+-..+..+|+++++.--..++..+..+.+..-+.. +..+..+..-.-|.++.|
T Consensus 91 ~~kn~klnkslq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW~d-----------------~~tV~i~~~acf~~~~ki 153 (616)
T KOG2229|consen 91 KHKNDKLNKSLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIWND-----------------SKTVNIITTACFSKVPKI 153 (616)
T ss_pred hcccchHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhccccc-----------------chhHHHHHHHHhccCcHH
Confidence 111111122345667788998888766667777777766655442 222333333355667888
Q ss_pred HHHHHHHH
Q 011316 441 YEKAVKIL 448 (488)
Q Consensus 441 ~~~a~~~l 448 (488)
.-.+...+
T Consensus 154 ~vs~l~Ff 161 (616)
T KOG2229|consen 154 LVSGLRFF 161 (616)
T ss_pred HHhhhHHh
Confidence 76666543
No 294
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.17 E-value=34 Score=35.18 Aligned_cols=135 Identities=20% Similarity=0.188 Sum_probs=83.0
Q ss_pred chHHHHHHhhccC----ChhHHHHHHHHHHHhcc----CCchhHHHHHHhCCHHHHHHhc----CCCCcchHhHHHHHHh
Q 011316 200 PALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTVG 267 (488)
Q Consensus 200 ~~~~~L~~ll~~~----~~~v~~~al~~L~~l~~----~~~~~~~~~~~~~~l~~L~~lL----~~~~~~v~~~a~~~L~ 267 (488)
..+..+..+++++ ...++..++-+++++.. ..+..-..+. ..+++.+...| ...+...+...+.+|+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 4566677777653 45677777777777663 1111101111 24455555544 3345566778899999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhc--ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhH
Q 011316 268 NIVTGDDMQTQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEI 343 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v 343 (488)
|+... ..+..+...+. ...+..+|..|+++|..++...+.. +-+.++.++.+. ++++
T Consensus 472 N~g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence 98652 22344444443 2225689999999999998644443 445566666664 7788
Q ss_pred HHHHHHHHHHh
Q 011316 344 KKEAAWAISNA 354 (488)
Q Consensus 344 ~~~a~~aL~~l 354 (488)
|..|+.+|...
T Consensus 533 RiaA~~~lm~t 543 (574)
T smart00638 533 RMAAVLVLMET 543 (574)
T ss_pred HHHHHHHHHhc
Confidence 88888777655
No 295
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=87.03 E-value=12 Score=37.73 Aligned_cols=219 Identities=11% Similarity=-0.023 Sum_probs=120.0
Q ss_pred cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--c---------CChhHHHHHHHHHHHhccCCchhHHHH
Q 011316 170 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--S---------NDDEVLTDACWALSYLSDGTNDKIQAV 238 (488)
Q Consensus 170 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~--~---------~~~~v~~~al~~L~~l~~~~~~~~~~~ 238 (488)
+++.+|...|-..|..+... .....++..|..+.. . .++.++...+..|+.-.... -
T Consensus 248 d~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------T 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------h
Confidence 34556777777777766654 233556666776665 2 24667777766666421110 0
Q ss_pred HHhCCHHHHHHhcCCC--CcchHhHHHHHH---hHhhcCCchhhHHHhhCCChHHHHHHhc-------ccchhhHHHHHH
Q 011316 239 IEAGVCPRLVELLRHP--SPSVLIPALRTV---GNIVTGDDMQTQCIINHQALPCLLDLLT-------QNYKKSIKKEAC 306 (488)
Q Consensus 239 ~~~~~l~~L~~lL~~~--~~~v~~~a~~~L---~~l~~~~~~~~~~~~~~~~~~~L~~lL~-------~~~~~~v~~~a~ 306 (488)
.....+..+...+.+. +..++..++..+ .....+.....-..+...+...+.+.++ ...+...|..+.
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aY 395 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAY 395 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHH
Confidence 1113344444455555 567777777777 5555544433222332233333333342 112678899999
Q ss_pred HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH-HHHHHCCChHHHHh-hcCCCCH
Q 011316 307 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI-KFLVSQGCIKPLCD-LLNCPDP 384 (488)
Q Consensus 307 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~-~~l~~~~~~~~L~~-ll~~~~~ 384 (488)
.+|+.++...+..... +.+++..|++-|..++++++...-.||..++..-..... ...........+.. .......
T Consensus 396 e~lG~L~~~~p~l~~~--d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (501)
T PF13001_consen 396 ETLGLLAKRAPSLFSK--DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVR 473 (501)
T ss_pred HHHHHHHccCcccccc--cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhH
Confidence 9999999875654311 234688888888888899998888888888643211000 00000011222222 2223445
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 011316 385 RIVTVCLEGLENILKAGE 402 (488)
Q Consensus 385 ~v~~~al~~L~~l~~~~~ 402 (488)
.+|..|++....++...+
T Consensus 474 ~~R~~avk~an~~fpf~d 491 (501)
T PF13001_consen 474 SCRYAAVKYANACFPFSD 491 (501)
T ss_pred HHHHHHHHHHHHhCCccc
Confidence 567777766666665444
No 296
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=86.96 E-value=5.1 Score=37.96 Aligned_cols=209 Identities=20% Similarity=0.167 Sum_probs=108.8
Q ss_pred HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316 71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 149 (488)
...++..+..++..+.++.....++.++..-+..- .+. ...++..+.+-+.+..+.+|+.-+..++......+.
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 34456677777776654677777777776655411 111 223467777778777777999988888888751111
Q ss_pred hHHHHHhcCChHHHHHHhccc---ccHhHH---HHHHHHHHHhhcCC-----------------CCCChhhhhchHHHHH
Q 011316 150 CRDLVLSNGALMPLLAQFNEH---AKLSML---RNATWTLSNFCRGK-----------------PQPLFEQTRPALPALE 206 (488)
Q Consensus 150 ~~~~~~~~~~i~~l~~~l~~~---~~~~v~---~~a~~~L~~l~~~~-----------------~~~~~~~~~~~~~~L~ 206 (488)
......-...++.+++.+.+. +-+..+ ..++.++..+.... +........
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~------- 167 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSE------- 167 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCH-------
Confidence 011111123566666666321 111111 11222222211111 000101111
Q ss_pred Hhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHHHhHhhcCCchhhHHHhhC
Q 011316 207 RLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINH 283 (488)
Q Consensus 207 ~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 283 (488)
+++.. .+++-....++++..+..........-.....-..++.++-+. .+.+|..|+.++..+...++.. +..
T Consensus 168 kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~ 243 (339)
T PF12074_consen 168 KVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSK 243 (339)
T ss_pred HHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHH
Confidence 22222 3445555666666666644332211111224456777887776 7899999999999998877753 222
Q ss_pred CChHHHHHHhcc
Q 011316 284 QALPCLLDLLTQ 295 (488)
Q Consensus 284 ~~~~~L~~lL~~ 295 (488)
.++..+-+.+..
T Consensus 244 ~li~~l~~~l~~ 255 (339)
T PF12074_consen 244 SLISGLWKWLSS 255 (339)
T ss_pred HHHHHHHHHHHh
Confidence 345555555543
No 297
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=86.37 E-value=15 Score=29.62 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=57.0
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH-HHHhhcC---CCHHHHHHHH
Q 011316 371 CIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSH---DNTEIYEKAV 445 (488)
Q Consensus 371 ~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~l~~~---~~~~v~~~a~ 445 (488)
++..|..-+. +.++.++..++..|..+++.+... |...+.+.+.++. |..+... .+.+|+.+..
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~-----------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil 107 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR-----------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVL 107 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH-----------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHH
Confidence 4555556555 468889999999999998877643 6677777778876 7777652 3568999999
Q ss_pred HHHHHhcCCCCC
Q 011316 446 KILETYWVEEDE 457 (488)
Q Consensus 446 ~~l~~~~~~~~~ 457 (488)
.++..+...-..
T Consensus 108 ~li~~W~~~f~~ 119 (141)
T cd03565 108 ALIQAWADAFRG 119 (141)
T ss_pred HHHHHHHHHhCC
Confidence 999998876554
No 298
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.29 E-value=25 Score=31.76 Aligned_cols=165 Identities=19% Similarity=0.174 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhhhhCCC-------chhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhh
Q 011316 130 DDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTR 199 (488)
Q Consensus 130 ~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 199 (488)
+...+.++..|..++... ++.+-.+.-...+|.++..+.+.. .......++..|..+|......
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~------ 149 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP------ 149 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc------
Confidence 445556777777776432 111222222234566666663222 0234456777888888553211
Q ss_pred chHHHHHHhhc-c---CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011316 200 PALPALERLIH-S---NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 200 ~~~~~L~~ll~-~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
-+..++.... . +..+....++..|+.-.- ++. +...+..++.+|.++-+.++..++.+|..+....+-
T Consensus 150 -~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~ 221 (262)
T PF14225_consen 150 -NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDM 221 (262)
T ss_pred -cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccC
Confidence 2222222222 2 223444444444443211 111 125567788999998889999999999999886554
Q ss_pred hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
... ...+++..+.++++++ ...+|..++-+...
T Consensus 222 ~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 222 RSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT 254 (262)
T ss_pred CCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence 432 5556889999999877 34567777666554
No 299
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.26 E-value=2.7 Score=36.65 Aligned_cols=79 Identities=23% Similarity=0.241 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHhcCCCchhhHHHHhCCC-------HHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhH-HHHHhcCC
Q 011316 89 QLQFEAAWALTNIASGTSENTRVVIDHGA-------VPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCR-DLVLSNGA 159 (488)
Q Consensus 89 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~-------i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~ 159 (488)
.=|..|+.+|++++- .+.+.+.+...+- +..|.+++.. +++-.|+.|+-.|.+++..+.... ....+.+.
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 358889999999997 5566666655553 3444555543 789999999999999998776544 55667788
Q ss_pred hHHHHHHhc
Q 011316 160 LMPLLAQFN 168 (488)
Q Consensus 160 i~~l~~~l~ 168 (488)
+..|+.++.
T Consensus 218 i~~Li~FiE 226 (257)
T PF12031_consen 218 ISHLIAFIE 226 (257)
T ss_pred HHHHHHHHH
Confidence 999999993
No 300
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=86.23 E-value=20 Score=30.54 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=56.4
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 150 (488)
.++.++++..+++ ..++..|+.++..+....--+-. ..+|.++.+..++++.++..|...+..+.+..+..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 5677788888888 89999999999888873322211 24799999999999999999999999998665543
No 301
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.06 E-value=73 Score=36.88 Aligned_cols=235 Identities=15% Similarity=0.090 Sum_probs=124.4
Q ss_pred HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc
Q 011316 70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~ 148 (488)
+..-.+..++..|..++ +..+-.+..+++.++...++.. ++ .+..+.++.-+.+ .++..|..-..+++.+-++..
T Consensus 873 v~~~~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~~--f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvg 948 (2067)
T KOG1822|consen 873 VRSSALTLIVNSLINPN-PKLRCAAAEALARLAQVVGSAP--FV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVG 948 (2067)
T ss_pred HHHHHHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccccc--hH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc
Confidence 33334556666677777 8888888888888886222111 11 1224455555544 666666666666666644332
Q ss_pred hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCC---hhHHHH------
Q 011316 149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND---DEVLTD------ 219 (488)
Q Consensus 149 ~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~v~~~------ 219 (488)
.....-.....+..++.+..++.++.|+..++.++..+...............+..+..++.+.. .++...
T Consensus 949 s~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~ 1028 (2067)
T KOG1822|consen 949 SIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFN 1028 (2067)
T ss_pred CCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccc
Confidence 22112222234666777776667779999999999988877633345555566666666665422 222211
Q ss_pred -------HHHHHHHhccCCch--hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHH
Q 011316 220 -------ACWALSYLSDGTND--KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 290 (488)
Q Consensus 220 -------al~~L~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 290 (488)
...+++.=...+.. ... ..+...+....-++.++++-++..+..++-++-...+.... -.-++..+.
T Consensus 1029 ~~~~~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~ 1104 (2067)
T KOG1822|consen 1029 GDDDEDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLC 1104 (2067)
T ss_pred cchhHHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHH
Confidence 11122221111111 111 12222233333345667888899999999888765543211 112445555
Q ss_pred HHhcccchhhHHHHHHHHHHHHh
Q 011316 291 DLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 291 ~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
.++.+. ..-.|.....++..+.
T Consensus 1105 ~~l~s~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1105 SLLSSS-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred HHhcch-hhhhhhhHHhhhhHHh
Confidence 555555 3334444444444443
No 302
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=86.05 E-value=8.9 Score=28.52 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011316 45 NIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 123 (488)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 123 (488)
++|..|+..+..=+... --....+. ....+..|++.++.+. ...+..++..+..++. ++.....+.+-|....|.+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 45666665554433332 22223333 4567788888888888 5688899999999988 7888888888898888777
Q ss_pred hhCCCCHHHHHHHHHHH
Q 011316 124 LLSSPTDDVREQAVWAL 140 (488)
Q Consensus 124 lL~~~~~~~~~~a~~~L 140 (488)
+-...++..+...-.++
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 66666666665554444
No 303
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.60 E-value=4 Score=35.68 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=61.8
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhC-------CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-HHcCC
Q 011316 257 SVLIPALRTVGNIVTGDDMQTQCIINH-------QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEAGI 328 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~-------~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~~ 328 (488)
+-+..|+.+|+.++.. +.....++.. .++..|.+++....+...|+.|+..|.+++.++......+ .+.+.
T Consensus 139 SPqrlaLEaLcKLsV~-e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVI-ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhee-ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 4678899999999873 2233333322 4566777778777688999999999999999766655443 46788
Q ss_pred hHHHHHHHhcCCh
Q 011316 329 IGPLVNLLLNAEF 341 (488)
Q Consensus 329 l~~L~~ll~~~~~ 341 (488)
+..|+.++.+.+.
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987643
No 304
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=85.39 E-value=36 Score=32.73 Aligned_cols=220 Identities=15% Similarity=0.155 Sum_probs=121.9
Q ss_pred cHhHHHHHHHHHHHhhcCCCCC---ChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHH
Q 011316 172 KLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 246 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~ 246 (488)
+..+..+|+.+++.+..+..-. ......-++...+..+.++ +..+....+++|..---.. .++....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHH
Confidence 6678889999999888765211 1112223555566666543 4567777777776532211 1223333444
Q ss_pred HHHhc---C--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--C-CHH
Q 011316 247 LVELL---R--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--G-NVN 318 (488)
Q Consensus 247 L~~lL---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~-~~~ 318 (488)
++..+ . -++..+....+.++.++....+.....-.+ ..++.++..+-+. ...+|..|...+..+.. + +..
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHH
Confidence 44433 2 245678888899999998866644322211 3677777776666 66677766655554443 2 122
Q ss_pred HHH---HHHHc----C-----ChHHHHHHHhcCChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCCHH
Q 011316 319 QIQ---AIIEA----G-----IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPDPR 385 (488)
Q Consensus 319 ~~~---~l~~~----~-----~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~~~~L~~ll~~~~~~ 385 (488)
... ...+. + +.+.|..++.+++....---+|...-+..... .+....+ +..+.....+++++++.
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~ 289 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQ 289 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHH
Confidence 111 12221 2 23346666666333222222333333333222 1222222 23566667788899999
Q ss_pred HHHHHHHHHHHHHHh
Q 011316 386 IVTVCLEGLENILKA 400 (488)
Q Consensus 386 v~~~al~~L~~l~~~ 400 (488)
++..|..+-..++..
T Consensus 290 ~k~~A~~aW~~liy~ 304 (372)
T PF12231_consen 290 VKIQAFKAWRRLIYA 304 (372)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998888763
No 305
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.03 E-value=48 Score=33.86 Aligned_cols=289 Identities=11% Similarity=0.110 Sum_probs=141.7
Q ss_pred cHHHHHHHh-cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-hh
Q 011316 31 SLPAMVAGV-WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-EN 108 (488)
Q Consensus 31 ~i~~l~~~L-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~ 108 (488)
.++.+.+.| .+.|+..|.+|-..|..+.. . ++. +..-.-++..++.|--+..|..+|..+..+.. -.
T Consensus 6 qLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-s-pec---------lskCqlll~~gs~pYs~mlAst~L~Klvs~~t~lp 74 (1082)
T KOG1410|consen 6 QLESLCKDLYESTDPTARHRAEKALAELSE-S-PEC---------LSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPLP 74 (1082)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-C-HHH---------HHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCCc
Confidence 345566666 47899999999999999643 2 232 22333355666657788888888888877432 11
Q ss_pred hHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHhhhhCCCc--hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHH
Q 011316 109 TRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 182 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~----~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~ 182 (488)
... ..++-..++..+.... +-+....+..++.+..-.. ..++...=.+.+..+.+.+ +..+.+--.-++..
T Consensus 75 l~q--rldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~i 151 (1082)
T KOG1410|consen 75 LEQ--RLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQI 151 (1082)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHH
Confidence 111 1133456666666533 3344444555555542211 0011111223455666666 33333333344445
Q ss_pred HHHhhcCC-------CCCChh---------hhhchHHHHHHhhccC-----Ch----hHHHHHHHHHHHhc------c--
Q 011316 183 LSNFCRGK-------PQPLFE---------QTRPALPALERLIHSN-----DD----EVLTDACWALSYLS------D-- 229 (488)
Q Consensus 183 L~~l~~~~-------~~~~~~---------~~~~~~~~L~~ll~~~-----~~----~v~~~al~~L~~l~------~-- 229 (488)
|..+...- |..... ....++..-..+++.. +. .+...++..-.+.. .
T Consensus 152 LsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~ 231 (1082)
T KOG1410|consen 152 LSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSST 231 (1082)
T ss_pred HHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccc
Confidence 55444321 100000 0112222222333211 11 22222222221111 1
Q ss_pred -C----------CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-----CchhhHHHhhCCChHHHHHHh
Q 011316 230 -G----------TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-----DDMQTQCIINHQALPCLLDLL 293 (488)
Q Consensus 230 -~----------~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~~~~L~~lL 293 (488)
. +......+.+...++.+.++..+-.+.....++.||..++.- +...+...+. ..++-..+++
T Consensus 232 DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~-~Lv~Gvk~il 310 (1082)
T KOG1410|consen 232 DESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ-HLVEGVKRIL 310 (1082)
T ss_pred ccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHH
Confidence 1 111233455667888888988887888899999999999862 2222222222 3445555666
Q ss_pred cccc---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 011316 294 TQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 336 (488)
Q Consensus 294 ~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll 336 (488)
.++. ++.--.+-|+.|+.+-.+ -+...++.....+..++++
T Consensus 311 ~np~~LsD~~nyHeFCRllaRlktN--YQL~ELv~v~~Y~e~irLi 354 (1082)
T KOG1410|consen 311 ENPQGLSDPANYHEFCRLLARLKTN--YQLGELVKVECYPEVIRLI 354 (1082)
T ss_pred hCCcCCCCcchHHHHHHHHHHHHhh--hhhHhhhccCCcHHHHHHH
Confidence 5542 344445566666655432 1222333333444444443
No 306
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.01 E-value=3 Score=33.59 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=58.7
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHH---HHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTE---IYEKAVK 446 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~---v~~~a~~ 446 (488)
++..|..-|.++++.++..|+..|..+++.+... |...+.....++.+..+.. +.... |++++..
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~-----------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ 111 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR-----------FHREVASKEFLDELVKLIKSKKTDPETPVKEKILE 111 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH-----------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHH
Confidence 4677778888899999999999999999876533 6777777778888888743 44444 8999999
Q ss_pred HHHHhcCCCCC
Q 011316 447 ILETYWVEEDE 457 (488)
Q Consensus 447 ~l~~~~~~~~~ 457 (488)
++..+......
T Consensus 112 ll~~W~~~f~~ 122 (140)
T PF00790_consen 112 LLQEWAEAFKS 122 (140)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHCC
Confidence 99887665533
No 307
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=84.86 E-value=49 Score=33.77 Aligned_cols=288 Identities=14% Similarity=0.160 Sum_probs=146.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
++..+=+.+-++++.++--|+-.+.-..++..++. .-++-.|...+++++ ..+|..|+..|+-.-.+ ..++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaG--sq~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAG--SQRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcC--CchH
Confidence 45566666666666666555444433333221111 123445666777777 68888888777655442 2333
Q ss_pred HHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 111 VVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
.+. ..|..++.+. ..++...+...|+.+..++.+ ..+ ....++.++..-.........+.....|.-+..
T Consensus 487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn--~dv-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl 558 (878)
T KOG2005|consen 487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCN--EDV-TSSILQTLMEKSETELEDQWFRFLALGLALLFL 558 (878)
T ss_pred HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCC--hHH-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence 332 2556666653 356777777777777644322 111 111233333322111122222333333333332
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC---cchHhHHHHH
Q 011316 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLIPALRT 265 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~~ 265 (488)
+. ...+.....-++.-...++..+-..+...+.......-.+-+ ..+...-.... ..-+..|+--
T Consensus 559 gk--------qe~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg 626 (878)
T KOG2005|consen 559 GK--------QESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG 626 (878)
T ss_pred cc--------cchHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence 22 122333333343333444443333333322211111110111 11222222211 1222244444
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011316 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 345 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 345 (488)
++.++.+.+-..+. .+..+-.+|.-+ ++.+|+..=.+++-++..+|.. ++++.|-++.++.+.++..
T Consensus 627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~ 693 (878)
T KOG2005|consen 627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM 693 (878)
T ss_pred hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence 55555544433332 345566677778 8899999888999888877763 4788899998999999999
Q ss_pred HHHHHHHHhccCCCH
Q 011316 346 EAAWAISNATSGGSN 360 (488)
Q Consensus 346 ~a~~aL~~l~~~~~~ 360 (488)
+++.+++-+-...+.
T Consensus 694 naIfamGLiGAGTnN 708 (878)
T KOG2005|consen 694 NAIFAMGLIGAGTNN 708 (878)
T ss_pred HHHHHhccccCCcch
Confidence 999999888665433
No 308
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=84.85 E-value=19 Score=33.54 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=85.4
Q ss_pred CcchHhHHHHHHhHhhcCCchhhHHHhhC-----------CChHHHHHHhc------ccchhhHHHHHHHHHHHHhcCCH
Q 011316 255 SPSVLIPALRTVGNIVTGDDMQTQCIINH-----------QALPCLLDLLT------QNYKKSIKKEACWTISNITAGNV 317 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~~~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~ 317 (488)
.-.+|.+|+.++.....++++....+++. ....-+...|- +. ++---..|+.++..+..+++
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence 45789999999999999888776666621 11222444443 22 33334578888889988877
Q ss_pred HHHHHHHHc------------CChHHHHHHHhc-----CChhHHHHHHHHHHHhccCCCHHHHHHHHH-CCChHHHHhhc
Q 011316 318 NQIQAIIEA------------GIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLL 379 (488)
Q Consensus 318 ~~~~~l~~~------------~~l~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll 379 (488)
+.+.....- ..+..+..+|.. .++.++..-+..|......+ +.....+.+ ...+..|++..
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~-p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFEC-PDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCC-HHHHHHHHcCcchHHHHHHHh
Confidence 776555421 125555555544 26777777788888887655 555555554 46788888865
Q ss_pred CC---CCHHHHHHHHHHHHHHHHhhh
Q 011316 380 NC---PDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 380 ~~---~~~~v~~~al~~L~~l~~~~~ 402 (488)
.+ .+.-++-.+.-.|+-....+.
T Consensus 209 ~~~~~~~~~VqGL~A~LLGicyef~~ 234 (312)
T PF04869_consen 209 NQSSSEDVLVQGLCAFLLGICYEFST 234 (312)
T ss_dssp S--TCCCHHHHHHHHHHHHHHHHT-S
T ss_pred hcCCCCcchHHHHHHHHHHHHHHhcC
Confidence 42 234455555555666666553
No 309
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=84.11 E-value=40 Score=32.17 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=85.8
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC--C--------CCHHHHHHHHHHHhhhh
Q 011316 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--S--------PTDDVREQAVWALGNVA 144 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~--~--------~~~~~~~~a~~~L~~l~ 144 (488)
-..++..|..+.....+..++..+.-++. +...-..+......+.|+.+-+ + .+..+...++.+|+|+.
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSR-dk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSR-DKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhc-cccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 34555666655434455666666666666 3333333332233444444321 1 34578888999999999
Q ss_pred CCCchhHHHHHhcCChHHHHHHhcccc------cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC------
Q 011316 145 GDSPKCRDLVLSNGALMPLLAQFNEHA------KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN------ 212 (488)
Q Consensus 145 ~~~~~~~~~~~~~~~i~~l~~~l~~~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~------ 212 (488)
.+++..++...+......+++.+.... +.+....=+..+...............-.+++.+.+.+.+.
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse 205 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSE 205 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCC
Confidence 999999999999888888877763221 11221111111112122112223334455666666666531
Q ss_pred ---------ChhHHHHHHHHHHHhccCC
Q 011316 213 ---------DDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 213 ---------~~~v~~~al~~L~~l~~~~ 231 (488)
+......++.++.|+....
T Consensus 206 ~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 206 INVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 1234556777777877543
No 310
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=83.91 E-value=29 Score=36.94 Aligned_cols=143 Identities=10% Similarity=0.127 Sum_probs=84.6
Q ss_pred HHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011316 246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325 (488)
Q Consensus 246 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 325 (488)
.+...+.++++......+.++.+++.-..-..+. ...-.+.-..-.+.. -..+......+|..++.-+++....++.
T Consensus 445 ~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~-~~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 445 ALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKS-LGQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 3344444445555555555555554321111000 111222222223333 3456677888899998877888877774
Q ss_pred -cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 326 -AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 326 -~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
.+....+..++-+++.++.+.|...|.......+ -.+.+..++++.-.........+|.++.+...
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~-----------R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~ 588 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG-----------RLEAIQALLQSNFSPTLSAINWSLRQLTKLKF 588 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 7789999999999999999999999999875332 23444445554444444555566666655443
No 311
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=83.79 E-value=14 Score=31.17 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=58.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 106 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~ 106 (488)
--+|.+++.|...+...+..|...+..++.....+.+-.+ -...+..+.+.|++.+ +++...++.+|..++..++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr~-~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTRD-PEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhh
Confidence 5688999999998888889999999998876222322222 3457788888999999 9999999999999966333
No 312
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.74 E-value=12 Score=34.30 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=73.9
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh-HHHhhCCChHHHHHHhcc-----------cchhhHHHHHHHHH
Q 011316 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-QCIINHQALPCLLDLLTQ-----------NYKKSIKKEACWTI 309 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~L~~lL~~-----------~~~~~v~~~a~~~L 309 (488)
-++|.++.++++.++.++..++.+|..+....+... ..+...|..+.+.+.+.. .++..+-..+.-++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 468999999999999999999999999998554332 224456655555444321 11445666666666
Q ss_pred HHHhc-----C---CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC
Q 011316 310 SNITA-----G---NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 381 (488)
Q Consensus 310 ~nl~~-----~---~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~ 381 (488)
..++. + .......++..+++..+...-....+.++...+..+..+...-+....+.+.+ .++.|.+.+++
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~r--ii~~l~~~l~n 276 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQR--IIPVLSQILEN 276 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhcC
Confidence 66633 1 11222222222333332222222235555555555555544333333333332 44555554443
No 313
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=83.67 E-value=36 Score=31.37 Aligned_cols=79 Identities=13% Similarity=0.264 Sum_probs=62.9
Q ss_pred cCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCH-HHHHHHHHCCChHHHHhhcCCC---CHHHHHHHHHHHHHHHH
Q 011316 326 AGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN-EQIKFLVSQGCIKPLCDLLNCP---DPRIVTVCLEGLENILK 399 (488)
Q Consensus 326 ~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~ 399 (488)
.|.+..+++.+... +...|-.-+.++-.+....+. ....++.+.|+++.++..+-++ +..+.+.+...|+.+++
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 56788888877765 667888899999999998877 4566889999999999966544 34688889999999998
Q ss_pred hhhhh
Q 011316 400 AGEAE 404 (488)
Q Consensus 400 ~~~~~ 404 (488)
.+...
T Consensus 174 ~n~~~ 178 (303)
T PF12463_consen 174 FNRDA 178 (303)
T ss_pred CCHHH
Confidence 76544
No 314
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=83.49 E-value=14 Score=40.35 Aligned_cols=236 Identities=19% Similarity=0.220 Sum_probs=132.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHH--------HhhcCCCChhHHHHHHHHHHHh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI--------EFLSRDDFPQLQFEAAWALTNI 101 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~--------~lL~~~~~~~v~~~a~~~L~~l 101 (488)
+.+..|+..+-++..++|.-++.+++.+++...........+..++..+. +...++--..+++.++++|..+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 44667888889999999999999999998765333222222222222221 1111111146899999999988
Q ss_pred cCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh---cCChHHHHHHhcccccHhHHHH
Q 011316 102 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS---NGALMPLLAQFNEHAKLSMLRN 178 (488)
Q Consensus 102 ~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~i~~l~~~l~~~~~~~v~~~ 178 (488)
.....+.... ..++.+.+++..+..+++...+..+..... .+...+. ..++...+..+ .+++..++..
T Consensus 157 l~~~~~s~~~----~~~~il~q~~~q~~w~ir~Ggll~iky~~a----ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~ 227 (1549)
T KOG0392|consen 157 LKHMDESLIK----ETLDILLQMLRQPNWEIRHGGLLGIKYNVA----IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSV 227 (1549)
T ss_pred HHhhhhHhhH----HHHHHHHHHHcCcchhheechHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHH
Confidence 8733222111 236777788877777777665555543321 1111111 12345555666 6777888888
Q ss_pred HHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCCh--hHHHHHHHHHHHhccCCc--hh-HHHHHHhCCHHHHHHhcCC
Q 011316 179 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD--EVLTDACWALSYLSDGTN--DK-IQAVIEAGVCPRLVELLRH 253 (488)
Q Consensus 179 a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~--~v~~~al~~L~~l~~~~~--~~-~~~~~~~~~l~~L~~lL~~ 253 (488)
|..++..............+..++..+...+..-+. .-.......+..++.... +. .+.-.+.|+++.+...+.+
T Consensus 228 aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~ 307 (1549)
T KOG0392|consen 228 AAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRH 307 (1549)
T ss_pred HHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 888887766654333333334444444444432221 011111122222222221 00 0111224788888888888
Q ss_pred CCcchHhHHHHHHhHhhcCCc
Q 011316 254 PSPSVLIPALRTVGNIVTGDD 274 (488)
Q Consensus 254 ~~~~v~~~a~~~L~~l~~~~~ 274 (488)
.=..++..++..+..+....+
T Consensus 308 ~i~sv~~a~l~~l~~lle~~~ 328 (1549)
T KOG0392|consen 308 TISSVRRAALETLAMLLEADD 328 (1549)
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 777888889998888877543
No 315
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=83.35 E-value=43 Score=31.96 Aligned_cols=154 Identities=16% Similarity=0.074 Sum_probs=90.4
Q ss_pred HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------cCChhHHHHHHHHHHHhccCC
Q 011316 162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------SNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~----------~~~~~v~~~al~~L~~l~~~~ 231 (488)
.++..+.+..-..-+..++.++..|+++...-.-......++.+..+-+ ..+..+...++.||+|+.-++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 4455553433445556666777777776543333344444555554432 234678999999999999888
Q ss_pred chhHHHHHHhCCHHHHHHhcCC----CCc-chHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhccc---------
Q 011316 232 NDKIQAVIEAGVCPRLVELLRH----PSP-SVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQN--------- 296 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~----~~~-~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~--------- 296 (488)
........+......+.+.+.. +.+ .+...-++.|.-+..-... ..+.+.+.++++.+.+++.++
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 7776777777666666665532 111 2333334444333332233 334445778888888888542
Q ss_pred -----chhhHHHHHHHHHHHHhcC
Q 011316 297 -----YKKSIKKEACWTISNITAG 315 (488)
Q Consensus 297 -----~~~~v~~~a~~~L~nl~~~ 315 (488)
++...-.+++.++.|+..+
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheeec
Confidence 1223445777888888874
No 316
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=83.34 E-value=30 Score=41.30 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=140.4
Q ss_pred HHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCC----CChhh--hhchHHHHH
Q 011316 133 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ----PLFEQ--TRPALPALE 206 (488)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~--~~~~~~~L~ 206 (488)
...+.++++++-...... ...+...+.......+++++..+..+++.+...... ..... ....+..+.
T Consensus 461 ~~~a~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll 534 (2341)
T KOG0891|consen 461 IQLAFKTLGGFKFSGYSL------TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL 534 (2341)
T ss_pred HHHHHHHHhhhhhhhhhH------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence 444666776664322111 012333333333667888998887777766655422 11111 233333333
Q ss_pred Hhh-ccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCC
Q 011316 207 RLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 285 (488)
Q Consensus 207 ~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 285 (488)
.+- .+++++++......+. ...-......+.+..+...+..+.-.++..+...+++++..++.....-+....
T Consensus 535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~ 608 (2341)
T KOG0891|consen 535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL 608 (2341)
T ss_pred HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence 332 2456776666555544 122233455566677777788888889999999999999988855444444334
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316 286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 365 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 365 (488)
+..+-.+-.+. ...++.....-+..+....+..+....+ ..+..++..+.+.+..+...+..++..|+..+..+....
T Consensus 609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~ 686 (2341)
T KOG0891|consen 609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKW 686 (2341)
T ss_pred HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhc
Confidence 44444444444 3444444444444444443444433333 356777777788888888889999999987665332222
Q ss_pred HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHh
Q 011316 366 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 366 l~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~ 400 (488)
.. ..+..+.+.+. ..+..-+..+++.+.++...
T Consensus 687 -~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~ 720 (2341)
T KOG0891|consen 687 -VD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS 720 (2341)
T ss_pred -cc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence 12 34444444443 33444556677777777653
No 317
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.30 E-value=65 Score=33.97 Aligned_cols=251 Identities=12% Similarity=0.115 Sum_probs=145.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316 33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV 112 (488)
Q Consensus 33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 112 (488)
..+=+.|+++....+-.+...+.++-...+.+ .+++ ..+=.|......++ ..+|...+++... +....+.+
T Consensus 27 ~~ldkGlr~~~t~eqpeavvr~~RLFek~Pfp---ifiN-s~llrLaDaF~~Gn-~llRf~V~rv~~q----~g~hln~v 97 (970)
T KOG1988|consen 27 MELDKGLRSGKTSEQPEAVVRFPRLFEKYPFP---IFIN-SQLLRLADAFPVGN-NLLRFAVLRVDQQ----SGKHLNKV 97 (970)
T ss_pred HHHhhcccccccccchHHHHHHHHHHhhCCch---hhhh-HHHHHHHHHhccCc-HHHHHHHHHHHhh----ccccchhh
Confidence 34566777777777777888888876654222 2333 23345556677777 6788777776653 22222222
Q ss_pred Hh-CCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011316 113 ID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP 191 (488)
Q Consensus 113 ~~-~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 191 (488)
.. ..++..+....++.|+.-|..++++++.+..--|+ .+..+.+++.-..+.+.--.+.++.+..+++....
T Consensus 98 ~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE-------fn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 98 LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPE-------FNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK 170 (970)
T ss_pred hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc-------ccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh
Confidence 21 12333444455678999999999999998754443 34455566554344444445667777777665431
Q ss_pred CCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhH
Q 011316 192 QPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGN 268 (488)
Q Consensus 192 ~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~ 268 (488)
..-.++...+..++... ..+..-.++.++..+...... -..+....+.++.. +..+-...-+.++.+
T Consensus 171 ----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~------A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 171 ----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG------ASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred ----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh------hHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 11123333444455433 345566677777777654321 11333445555543 444445566777777
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
++...-.. -.+-.+.+.+.++.+....++..+.|.+.+++.
T Consensus 241 Lasrs~~a-----i~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 241 LASRSLVA-----ISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHH-----hHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 77632211 224567788888866466777778888777764
No 318
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=83.12 E-value=1.5 Score=35.30 Aligned_cols=74 Identities=16% Similarity=0.114 Sum_probs=58.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChh---HHHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ---LQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~---v~~~a~~~L~~l~~ 103 (488)
+.+..|.+-|++.++.+++.|+..|-.++.+.+......+....++..|.+++.+..... ++..++..+...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999888654455566667778999999887654344 88888887776654
No 319
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=82.40 E-value=75 Score=34.10 Aligned_cols=130 Identities=11% Similarity=0.168 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011316 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 166 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~ 166 (488)
+.++..+.-.++++|-.+....+. .+|.|++-|+- +...+|.+..-+++.+|..- ..+-...++.+...
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr-----~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKR-----LMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHH
Confidence 357788888899988755444332 37888887764 66778888888888887432 22233467888888
Q ss_pred hcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316 167 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 167 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
| .++++-++++++..|.+|........ ...++-.++..+-+.+++++..+=.+++.+....
T Consensus 1015 L-~Dp~~iVRrqt~ilL~rLLq~~~vKw---~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1015 L-CDPSVIVRRQTIILLARLLQFGIVKW---NGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred h-cCchHHHHHHHHHHHHHHHhhhhhhc---chhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 8 88899999999999999987642221 1222222333333567889999888888877543
No 320
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=81.95 E-value=16 Score=34.30 Aligned_cols=72 Identities=8% Similarity=0.067 Sum_probs=60.1
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~ 399 (488)
++..+.+-+.+.++.|...|+..+..++.++....+..+....+...|..+++ ...+.|++..-..+.....
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 57778888999999999999999999999998888899999999999999998 5667777666555555543
No 321
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.18 E-value=85 Score=38.86 Aligned_cols=306 Identities=12% Similarity=0.047 Sum_probs=140.3
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC------Cc--hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG------TS--ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~------~~--~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~ 144 (488)
-.++.|+..+...+ ..+...+..++..+... ++ ..+..+ -.++++.+.++..++...-+...+..|..+.
T Consensus 984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi-~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPM-FEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccch-HHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 35677777777666 56666666655544320 11 111111 1133444444554444444444444444444
Q ss_pred CCCchhHHHHHhcCChHHHHHHhcccc------cHhHHHHHHHHHHHhhcCC---CCCChhhhhchHHHHHHhhccCChh
Q 011316 145 GDSPKCRDLVLSNGALMPLLAQFNEHA------KLSMLRNATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSNDDE 215 (488)
Q Consensus 145 ~~~~~~~~~~~~~~~i~~l~~~l~~~~------~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~L~~ll~~~~~~ 215 (488)
.+.+...-.-.....+..+...+.+.. ..+.....+.-+...+... +........+++..++.-+.+++..
T Consensus 1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence 443311111111223444444442111 1112222222222222112 2333344567788888888899999
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHh--CC--HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-------hHHHh---
Q 011316 216 VLTDACWALSYLSDGTNDKIQAVIEA--GV--CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-------TQCII--- 281 (488)
Q Consensus 216 v~~~al~~L~~l~~~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~--- 281 (488)
|++.+..+|.+++.........+.+. .. ++.+..-+....-..+...+.++..+..-.+.. .....
T Consensus 1142 VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~ 1221 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLI 1221 (3550)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHH
Confidence 99999999999986553222222211 11 111111112222223333344443333322211 11000
Q ss_pred ------hCCChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHH--HHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 011316 282 ------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQI--QAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 350 (488)
Q Consensus 282 ------~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~--~~l~~~~~l~~L~~ll~~~~~~v~~~a~~a 350 (488)
+..... +.+...... ....|..+..+++......+-.. ..-...+++..++..+....+++...+..+
T Consensus 1222 ~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~ 1300 (3550)
T KOG0889|consen 1222 ALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEG 1300 (3550)
T ss_pred Hhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 001111 222221110 22345666666665554222111 111234578888888999899999999999
Q ss_pred HHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011316 351 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP 382 (488)
Q Consensus 351 L~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~ 382 (488)
+...... +...-+.+++.+.-+.|+++-+..
T Consensus 1301 l~~v~~~-~~~~~ke~lq~~lrplL~~l~d~~ 1331 (3550)
T KOG0889|consen 1301 LRKVLAQ-DVKLPKELLQSHLRPLLMNLSDHN 1331 (3550)
T ss_pred HHhhhhc-cccccHHHHHhhHHHHHHhhhHhh
Confidence 9888654 233444455545555555554433
No 322
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=80.87 E-value=12 Score=28.80 Aligned_cols=71 Identities=18% Similarity=0.281 Sum_probs=51.8
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh-----h-cCCCHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-----Q-SHDNTEIYEKA 444 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l-----~-~~~~~~v~~~a 444 (488)
++..|..-+.++++.++..++..|..+++.+... |...+.+...+..+..+ . ...+..|+.++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~-----------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~ 106 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER-----------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKA 106 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH-----------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHHH
Confidence 4667777778889999999999999999887643 56666665555444332 2 23478899999
Q ss_pred HHHHHHhc
Q 011316 445 VKILETYW 452 (488)
Q Consensus 445 ~~~l~~~~ 452 (488)
..+++.+.
T Consensus 107 ~~l~~~w~ 114 (115)
T cd00197 107 IELVQLWA 114 (115)
T ss_pred HHHHHHHh
Confidence 99988764
No 323
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.30 E-value=1.1e+02 Score=34.46 Aligned_cols=270 Identities=13% Similarity=0.109 Sum_probs=117.2
Q ss_pred cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011316 172 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
..+++.....++.++...........-..+++.+-.+.... ..++...+..++.-++...-.....=.-.++++.+.
T Consensus 855 ~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~ 934 (1610)
T KOG1848|consen 855 GVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLL 934 (1610)
T ss_pred cceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHH
Confidence 44566677777777766541111111122222222222222 345556666666655543211111011114555555
Q ss_pred HhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHh----hCCChHHHHHHhcccchhhHHHHHHHHHH--HHhcCCHHHHH
Q 011316 249 ELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCII----NHQALPCLLDLLTQNYKKSIKKEACWTIS--NITAGNVNQIQ 321 (488)
Q Consensus 249 ~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~~~~L~~lL~~~~~~~v~~~a~~~L~--nl~~~~~~~~~ 321 (488)
..-+. .+-.+...|+..++++...-.......- ....++.+.. ..+ ...+-.+++|.+. +++....+.+
T Consensus 935 ~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~ll~~L~~~~~dsr- 1010 (1610)
T KOG1848|consen 935 VFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIMLLVHLADLCEDSR- 1010 (1610)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHHHHHHHHHhccch-
Confidence 55433 4556777777777776542111000000 1223333333 222 3345556665532 3332111111
Q ss_pred HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHH----hhcCCCCHHHHHHHHHHHHHH
Q 011316 322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC----DLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 322 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~----~ll~~~~~~v~~~al~~L~~l 397 (488)
.-+.+|++..+++++.++...+.. ++|..+-.- ....|.+..-....- +.++....+.....+.++.++
T Consensus 1011 ~eVRngAvqtlfri~~Shg~~l~~-~aW~s~~w~------vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGT-NAWASCCWL------VIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred HHHhhhHHHHHHHHHhhhcccCCh-hHHHHHHHH------HHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence 223456677777777665443332 222222110 001111100000000 001122234555666677766
Q ss_pred HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011316 398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE 459 (488)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 459 (488)
+....+.-. ..|.+....++. ++.+..+..+.++++.-.|.+.+++..-.--+.+
T Consensus 1084 f~e~fk~ll-----nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qell~sii~~~ 1138 (1610)
T KOG1848|consen 1084 FSENFKLLL-----NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQELLFSIIEFG 1138 (1610)
T ss_pred HHHHHHHHH-----hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhc
Confidence 643222111 112234434332 5667777788899999999998887655433333
No 324
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=80.18 E-value=52 Score=30.83 Aligned_cols=182 Identities=14% Similarity=0.157 Sum_probs=102.4
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-Hhc---cc----chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 011316 257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLT---QN----YKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~---~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 328 (488)
.++...+..+.......+.. .. +...+++.+++ +|. .. .++++-.-....+..+-....+....+.+. +
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~-v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEA-V 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHH-H
Confidence 35667777777777644422 22 33356666665 331 11 133444444444444433223334444443 6
Q ss_pred hHHHHHHHhcC---ChhHHHHHHHHHHHhccCC-------CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011316 329 IGPLVNLLLNA---EFEIKKEAAWAISNATSGG-------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 398 (488)
Q Consensus 329 l~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~ 398 (488)
+...+.++..+ -|+.|..-...|.++...+ +++..+. ++..+.-.+++++.++...++.++..++
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 66777777764 4778877777777776543 2222222 4667777788999999999999999998
Q ss_pred HhhhhhhccCCCCccchHHHHHHhhccHHHHHHh----hcCCCHHHHHHHHHHHHHhcCC
Q 011316 399 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL----QSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
....+... .+...|-+.-.++.+..+ .++.+......-..++.+++.-
T Consensus 194 ~~~~~~~~--------~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ 245 (319)
T PF08767_consen 194 NNVSKTNP--------EFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRL 245 (319)
T ss_dssp HHHHH-SH--------HHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHH
T ss_pred HHHHhcCH--------HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHH
Confidence 77665110 133444444444444443 4555555556666788888854
No 325
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.49 E-value=92 Score=34.92 Aligned_cols=98 Identities=14% Similarity=0.045 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---cc---ccHhHHHHHHHHHHHhhcCC-CCCChhhh
Q 011316 126 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EH---AKLSMLRNATWTLSNFCRGK-PQPLFEQT 198 (488)
Q Consensus 126 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~---~~~~v~~~a~~~L~~l~~~~-~~~~~~~~ 198 (488)
.++..+++...+.++.++....-+ .+.. + -+.+++.+. .. ....+.+.+..+|.-++.+. +.-.....
T Consensus 852 s~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 346677888888888888754322 1111 1 333333332 11 23456777777777777766 55566666
Q ss_pred hchHHHHHHhhcc-CChhHHHHHHHHHHHhc
Q 011316 199 RPALPALERLIHS-NDDEVLTDACWALSYLS 228 (488)
Q Consensus 199 ~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~ 228 (488)
.+++..+..+-+. .|..+--.|+..+.+++
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvs 957 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVS 957 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHH
Confidence 7788888777664 46666666666666655
No 326
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=78.81 E-value=71 Score=31.57 Aligned_cols=228 Identities=15% Similarity=0.113 Sum_probs=118.7
Q ss_pred ChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-----------CCCChhhhhchHHHHHHhhcc----CC----hhHHHH
Q 011316 159 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-----------PQPLFEQTRPALPALERLIHS----ND----DEVLTD 219 (488)
Q Consensus 159 ~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-----------~~~~~~~~~~~~~~L~~ll~~----~~----~~v~~~ 219 (488)
+|..+.+.+..+....++.+++|.|.++-... ++....-...++...+.++-. +. +.....
T Consensus 98 vir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkv 177 (589)
T PF11229_consen 98 VIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKV 177 (589)
T ss_pred HHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHH
Confidence 56777777766778889999999998773211 222333345667777766642 22 334444
Q ss_pred HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchh
Q 011316 220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK 299 (488)
Q Consensus 220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 299 (488)
++.-+........ ...+--.-++..|+++ +-.++++..++.+...=+..+ .....++..=+.+.++.-+ +.
T Consensus 178 vl~~ia~vgeS~q--yPPVNWaalLsPLMRl--nfGeEvq~lCLeiAvtQaqSS-qsAa~fLg~WlsPpli~sL----s~ 248 (589)
T PF11229_consen 178 VLKPIATVGESYQ--YPPVNWAALLSPLMRL--NFGEEVQQLCLEIAVTQAQSS-QSAAMFLGSWLSPPLIHSL----SV 248 (589)
T ss_pred HHHHhhhcCCCCC--CCCccHHHHhhHHHhc--cccHHHHHHHHHHHHHhcccc-ccHHHHHHhhcCcchhhhh----hH
Confidence 4444444332211 1111111234445444 224677777776654444422 2344455555555555555 33
Q ss_pred hHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH--HHHHHHCCChHHHH
Q 011316 300 SIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ--IKFLVSQGCIKPLC 376 (488)
Q Consensus 300 ~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~~~~L~ 376 (488)
..|...+.-+.-... -.++.++.+++.-++..+-..-.-.++++...++..|..-....++.+ ...+. ...+.+.
T Consensus 249 ~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc--~ttekIF 326 (589)
T PF11229_consen 249 NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLC--ETTEKIF 326 (589)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHH
Confidence 456666666665555 345666666663223222221112367788888888877666554432 22223 2555666
Q ss_pred hhcCC----CCHHHHHHHHHHHHHH
Q 011316 377 DLLNC----PDPRIVTVCLEGLENI 397 (488)
Q Consensus 377 ~ll~~----~~~~v~~~al~~L~~l 397 (488)
+++-. .+-+......++|..+
T Consensus 327 ~lLPn~i~~~eveLYi~vAkCLSEM 351 (589)
T PF11229_consen 327 DLLPNKIQRNEVELYIGVAKCLSEM 351 (589)
T ss_pred HhCcccccHHHHHHHHHHHHHHhhc
Confidence 65532 2333444444555444
No 327
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=78.81 E-value=5.6 Score=36.21 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=65.9
Q ss_pred CChhHHHHHHHHHHHhccCCchhHHHHHHh-C--CHHHHHHhcCCC---CcchHhHHHHHHhHhhcCCchhh-HHHhhCC
Q 011316 212 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-G--VCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQT-QCIINHQ 284 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~--~l~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~ 284 (488)
..+..+.-++++++|+..+.... ..+.+. + ++..+.....+. +..++..+...+.|++....... ..-....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGR-QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCH-HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccH-HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 45777888999999999876554 333332 2 222233323332 57788888888888876322111 1001112
Q ss_pred ChHHHHH-HhcccchhhHHHHHHHHHHHHhcCCHHHHH
Q 011316 285 ALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQIQ 321 (488)
Q Consensus 285 ~~~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~ 321 (488)
++..+.+ +.....++++...++.+++++...++....
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence 4556666 333434889999999999999976554433
No 328
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=78.29 E-value=50 Score=29.53 Aligned_cols=123 Identities=20% Similarity=0.325 Sum_probs=74.5
Q ss_pred CCChhhHHHHhhhccHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC
Q 011316 17 PMDPMFFIIQLQLESLPAMVAGVWS-----------DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 85 (488)
Q Consensus 17 ~~~~~~~~~~~~~~~i~~l~~~L~s-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~ 85 (488)
|.+.+...+......+|.|++.|.. ++......|+..|..+- +...++.++++++.+
T Consensus 18 P~~al~~A~~~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~r------------e~~A~~~li~l~~~~ 85 (249)
T PF06685_consen 18 PREALEAAIEQREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFR------------EERALPPLIRLFSQD 85 (249)
T ss_pred cHHHHHHHHHCHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHh------------hhhhHHHHHHHHcCC
Confidence 4444444433344557777776642 22233455555555532 235789999999776
Q ss_pred CChh--------HHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011316 86 DFPQ--------LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVL 155 (488)
Q Consensus 86 ~~~~--------v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~ 155 (488)
+ .. +-+...+++..++ .|-++.|.+++.++ +.-+|..|+.+|..++...+..|+.++
T Consensus 86 ~-~~~~~l~GD~~tE~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi 152 (249)
T PF06685_consen 86 D-DFLEDLFGDFITEDLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVI 152 (249)
T ss_pred c-chHHHHHcchhHhHHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 6 21 1122222333333 36688888888874 467899999999999988887777766
Q ss_pred hcCChHHHHHH
Q 011316 156 SNGALMPLLAQ 166 (488)
Q Consensus 156 ~~~~i~~l~~~ 166 (488)
+ .+..++..
T Consensus 153 ~--~f~~ll~~ 161 (249)
T PF06685_consen 153 Q--YFRELLNY 161 (249)
T ss_pred H--HHHHHHHH
Confidence 5 44445544
No 329
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=78.28 E-value=63 Score=30.69 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHh
Q 011316 129 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 208 (488)
Q Consensus 129 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~l 208 (488)
+..-++.|...+.+...+-|...+. ++..-+.+. .+.|..++++|+.-|-.+|.++ ....+.+.++++
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~rv~d~l~qL 104 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALSRVNDVLVQL 104 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhhhhHHHHHHH
Confidence 3445566777787777666654333 455566666 7778889999999999888873 122333444444
Q ss_pred hc------------cCChhHHHHHHHHHHH-hccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 209 IH------------SNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 209 l~------------~~~~~v~~~al~~L~~-l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
|. ..|..+++.++..|.. +..-.++....-++..++..+...|.+...+--...+..|+++..
T Consensus 105 Lnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~ 180 (460)
T KOG2213|consen 105 LNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKS 180 (460)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 43 2356666666666553 222222222223333445555555555443333444555555544
No 330
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=78.21 E-value=6.1 Score=36.99 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=63.5
Q ss_pred CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHH
Q 011316 370 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKIL 448 (488)
Q Consensus 370 ~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~-~~~~~v~~~a~~~l 448 (488)
.+++.+++-+.+.++.|+..|+..+..++..+.+. |+..+........|..+.. +..+.|.++...++
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~-----------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR-----------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH-----------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 36788889999999999999999999988776643 5666777777778888877 77899999999999
Q ss_pred HHhcCCCCCC
Q 011316 449 ETYWVEEDED 458 (488)
Q Consensus 449 ~~~~~~~~~~ 458 (488)
.++.++-..|
T Consensus 114 ~eWsee~K~D 123 (462)
T KOG2199|consen 114 KEWSEEFKKD 123 (462)
T ss_pred HHHHHHhccC
Confidence 9888865553
No 331
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.11 E-value=41 Score=28.39 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=52.9
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH
Q 011316 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 317 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 317 (488)
-.++.+++-|...+...+-.|...+..+... ..+..-.++. .++..+...|++. ++++...++.+|..++..++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTR-DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhh
Confidence 4567777777776666777777777777665 3333333333 6777888888999 99999999999999966433
No 332
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.04 E-value=1.1e+02 Score=33.35 Aligned_cols=238 Identities=16% Similarity=0.183 Sum_probs=123.8
Q ss_pred hcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC--CCchhhHHHHhCC
Q 011316 39 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS--GTSENTRVVIDHG 116 (488)
Q Consensus 39 L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g 116 (488)
|++++.+.+...+..+.++-+.. .++-...-+.--+|.++.-+..-. ..+|...+.++---.. ..-..++
T Consensus 476 LkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPeqE------ 547 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPEQE------ 547 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcHHH------
Confidence 45788888888888888877655 455555556667888887776654 4566555544322111 0111111
Q ss_pred CHHHHHHhhCCC-CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCC
Q 011316 117 AVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQ 192 (488)
Q Consensus 117 ~i~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~ 192 (488)
+-.|.-+|+.+ +..+....+.....+...+...++.+.+-|.++.+...+.++. .++ +.. ........++.
T Consensus 548 -LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qys---gvsehydrnps 622 (2799)
T KOG1788|consen 548 -LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QYS---GVSEHYDRNPS 622 (2799)
T ss_pred -HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hhh---hHHHHhhcCCC
Confidence 23445556553 4556666666666666666777888888898888877774421 000 000 01111111110
Q ss_pred C-Ch---hhhhchHHHHHHhhccCC--hhH------HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHh
Q 011316 193 P-LF---EQTRPALPALERLIHSND--DEV------LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260 (488)
Q Consensus 193 ~-~~---~~~~~~~~~L~~ll~~~~--~~v------~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~ 260 (488)
. .+ ......+-.--.+++++. ..+ ......+|..+..++.+..+.+.+..++..++.++- +++.|.
T Consensus 623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli--ndehRS 700 (2799)
T KOG1788|consen 623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRS 700 (2799)
T ss_pred CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHH
Confidence 0 00 000011101112222211 111 112234555666666666666777777777777774 345677
Q ss_pred HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc
Q 011316 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 295 (488)
Q Consensus 261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 295 (488)
..++++..+....+.+.. ..-+..+++.|++
T Consensus 701 slLrivscLitvdpkqvh----hqelmalVdtLks 731 (2799)
T KOG1788|consen 701 SLLRIVSCLITVDPKQVH----HQELMALVDTLKS 731 (2799)
T ss_pred HHHHHHHHHhccCccccc----HHHHHHHHHHHHh
Confidence 778888777765554321 1223445555554
No 333
>PLN03205 ATR interacting protein; Provisional
Probab=77.45 E-value=67 Score=30.55 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=96.7
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---CchhHHHHHHhCCHH---HHHHhc-CCCCcchHhHHHHHHhHh
Q 011316 197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCP---RLVELL-RHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 197 ~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~l~---~L~~lL-~~~~~~v~~~a~~~L~~l 269 (488)
....++..|+.+..-++..+...+++.|..+.++ +..+.+.-.+.+.+. .+.+.. .+..+.++..|+.+..-+
T Consensus 320 ~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVI 399 (652)
T PLN03205 320 NLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNII 399 (652)
T ss_pred eHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHh
Confidence 3456677777777777777877788777765532 223333333333322 222221 345677888888887776
Q ss_pred hcCCch--hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH-----------H-----------
Q 011316 270 VTGDDM--QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-----------E----------- 325 (488)
Q Consensus 270 ~~~~~~--~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-----------~----------- 325 (488)
...++. .++.+....+++.+..+|+...-..|+++|+..+--+... +.....+. +
T Consensus 400 lmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-pklL~iFcSg~~e~~~ad~eNd~~~n~st~k 478 (652)
T PLN03205 400 VMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-PKLYDRFDSLHEEKNSSDTENDSEGNFFALE 478 (652)
T ss_pred hhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-cHHHHHHhcCCccccccccccccccccccHH
Confidence 665443 3344445577888888997765667888887665433221 11111111 0
Q ss_pred --cCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCC
Q 011316 326 --AGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGS 359 (488)
Q Consensus 326 --~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~ 359 (488)
..++.-|-+++... +.++++.+...|+.+++.+.
T Consensus 479 ~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 479 AFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 11355555566543 66788999999999988763
No 334
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=77.10 E-value=1e+02 Score=35.43 Aligned_cols=108 Identities=13% Similarity=0.140 Sum_probs=61.0
Q ss_pred CCHHHHHHh----cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH
Q 011316 242 GVCPRLVEL----LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 317 (488)
Q Consensus 242 ~~l~~L~~l----L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~ 317 (488)
..++.++.+ +.+.++.++..+......+....+... ...++..|+..+.++ +..-...|+.+|..++..++
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~----qqeVv~~Lvthi~sg-~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC----QQEVVGALVTHIGSG-NSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh----HHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhccH
Confidence 455555544 577888888888777777766554322 224677788877666 44444688999999987555
Q ss_pred HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 318 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 318 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
+....... .+..+++.+.+=+..-.+.....|+.++.
T Consensus 506 ~~l~~fa~--~l~giLD~l~~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 506 SELQPFAT--FLKGILDYLDNLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp HHHHHTHH--HHHGGGGGGGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 55443322 33333444443333333445666666653
No 335
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=74.89 E-value=24 Score=28.48 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=53.9
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011316 202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 281 (488)
Q Consensus 202 ~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 281 (488)
...++++|+++...-....+..|.+=..-..+. ...++.+++..+..-=.....--+..|+..|+.|..+..
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN------- 95 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN------- 95 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-------
Confidence 445667776655444445555555544322222 224444555555444322333446678888888876543
Q ss_pred hCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 282 NHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 282 ~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
+..|+.+|.+. +..+...|+.+|.+-..
T Consensus 96 ----V~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 ----VQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ----HHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ----HHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 57799999888 88899999999987655
No 336
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=74.80 E-value=78 Score=29.97 Aligned_cols=213 Identities=11% Similarity=0.055 Sum_probs=107.9
Q ss_pred HHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC
Q 011316 133 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN 212 (488)
Q Consensus 133 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~ 212 (488)
|.....+|..+.. .+ ....++..+..++.++.++......+.++..=+..- .......++..+.+-+.+.
T Consensus 4 r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred HHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCC
Confidence 4445556666644 22 222346677777777788887777777776433322 1222356777788888888
Q ss_pred ChhHHHHHHHHHHHhccCCc-hhHHHHHHhCCHHHHHHhc----CCCCcchH---hHHHHHHhHhhcCCchhhHH-----
Q 011316 213 DDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELL----RHPSPSVL---IPALRTVGNIVTGDDMQTQC----- 279 (488)
Q Consensus 213 ~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL----~~~~~~v~---~~a~~~L~~l~~~~~~~~~~----- 279 (488)
.+.+|..-+..++....... .....+.. .+++.|.+.+ .++.+... ..+..++..+..........
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 152 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISF 152 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhh
Confidence 88788888888888765111 11111222 4566666665 33333222 11222222211111111000
Q ss_pred --Hh-hC--C--ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHH
Q 011316 280 --II-NH--Q--ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWA 350 (488)
Q Consensus 280 --~~-~~--~--~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~a 350 (488)
+. +. . .-+.+..-+. +++...-.+.++..+..+.......-.....-..++.++.+. .+++|+.|..+
T Consensus 153 ~~l~~~~kps~ll~~kvyskl~---~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~ 229 (339)
T PF12074_consen 153 WSLALDPKPSFLLSEKVYSKLA---SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSA 229 (339)
T ss_pred hhhccCCCcchhcCHHHHhccC---CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 00 00 0 0112222221 223333444455554443222111111223566778888887 89999999999
Q ss_pred HHHhccCCC
Q 011316 351 ISNATSGGS 359 (488)
Q Consensus 351 L~~l~~~~~ 359 (488)
+..+.....
T Consensus 230 l~~l~~~~~ 238 (339)
T PF12074_consen 230 LKKLYASNP 238 (339)
T ss_pred HHHHHHhCh
Confidence 999987553
No 337
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=73.40 E-value=34 Score=27.54 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=57.0
Q ss_pred ChHHHHHHHhc-CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHH-HHhhcCC---CCHHHHHHHHHHHHHHHH
Q 011316 328 IIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP-LCDLLNC---PDPRIVTVCLEGLENILK 399 (488)
Q Consensus 328 ~l~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~-L~~ll~~---~~~~v~~~al~~L~~l~~ 399 (488)
++..|.+-+.+ .++.++..|+..|-.++.++.......+...+++.. |++++.. .+..|+..++..+.....
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45556666664 588899999999999999999888888898899997 8998863 345788888877776654
No 338
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=73.14 E-value=58 Score=35.98 Aligned_cols=244 Identities=15% Similarity=0.139 Sum_probs=130.1
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH-HHHHHhCCHHHH--------HHhcC-CCCcchHhHHHHHHhH
Q 011316 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRL--------VELLR-HPSPSVLIPALRTVGN 268 (488)
Q Consensus 199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L--------~~lL~-~~~~~v~~~a~~~L~~ 268 (488)
.+++..|+..+-++.+.++.-+..+++.+.....+.. ...++.-.+..+ -+... +.-..+++.+.++|+.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 4666777777777888888888888887764322111 111221111111 11111 1123688999999998
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
+..+...... ...++.+..++..+ .++++...+..+.....-..+....+. ..+++..+.-+.+.+.+++..|+
T Consensus 156 ~l~~~~~s~~----~~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~-~~vl~~~i~~L~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 156 YLKHMDESLI----KETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLL-NLVLDFVIEGLEDSDDDVRSVAA 229 (1549)
T ss_pred HHHhhhhHhh----HHHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcchHHHHHHH
Confidence 8875432211 24567788888777 777776666555533331122222222 23678888888888999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCH--HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccH
Q 011316 349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL 426 (488)
Q Consensus 349 ~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 426 (488)
..+.-.++.......+.+.. ++..+...+..-+. .-.......+..++...+... .+...=.+.|..
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~--lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~---------l~~~~n~~~~Lv 298 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAK--LVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLD---------LFEQQNLEVGLV 298 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHH--HHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHH---------HHHHhhhhhccc
Confidence 98887765431122222211 23333332221111 000111111222222211100 011111224666
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011316 427 EKIENLQSHDNTEIYEKAVKILETYWVEEDEDE 459 (488)
Q Consensus 427 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 459 (488)
+.+--+..+.-..++..+...+..+.+....++
T Consensus 299 p~~~p~l~~~i~sv~~a~l~~l~~lle~~~qs~ 331 (1549)
T KOG0392|consen 299 PRLWPFLRHTISSVRRAALETLAMLLEADDQSD 331 (1549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 777777778777888888888888888774444
No 339
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=72.82 E-value=97 Score=31.74 Aligned_cols=140 Identities=13% Similarity=0.063 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhccCCCcc--HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC--CCHHH
Q 011316 45 NIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPI 120 (488)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~ 120 (488)
+.+..|+.+|+-++.+..... ........++..++..+. .+ +..+..++++|.|+.. ++..++.+... .++..
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~-~an~ll~vR~L~N~f~-~~~g~~~~~s~~~~i~~~ 635 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-AD-PANQLLVVRCLANLFS-NPAGRELFMSRLESILDP 635 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cc-hhHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHhhh
Confidence 344556666665554431111 111112235555666555 44 6788999999999999 57777776543 12222
Q ss_pred HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh----cccccHhHHHHHHHHHHHhhcCC
Q 011316 121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF----NEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 121 L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l----~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
+...-..++..++........|++.- ..+.-.+.+..+.+...+ ....|-+.....+.+|.+|+...
T Consensus 636 ~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 636 VIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 22222225566666555555555310 000000122333333322 22233344555666777777664
No 340
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=72.82 E-value=19 Score=27.65 Aligned_cols=73 Identities=16% Similarity=0.122 Sum_probs=52.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHh-----hcCCCChhHHHHHHHHHHHhc
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-----LSRDDFPQLQFEAAWALTNIA 102 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l-----L~~~~~~~v~~~a~~~L~~l~ 102 (488)
+.+..|.+-|.+.++.+++.|+..|-.++.+.+......+....++..++++ ........+|..+...+...+
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 4566788888899999999999999999887755666666666666666553 111123688888887776543
No 341
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=70.38 E-value=38 Score=33.70 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=69.7
Q ss_pred CCChHHHHHHhcccchhhHHHHHHHHHHHHh--cCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCC-
Q 011316 283 HQALPCLLDLLTQNYKKSIKKEACWTISNIT--AGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG- 358 (488)
Q Consensus 283 ~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~--~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~- 358 (488)
.++++.+++.+..+ .+-.-....++ .= .......+-+.+.++++.|+.+|... +++++.+|+..|+.+....
T Consensus 20 ~~~v~~llkHI~~~---~ImDlLLklIs-~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHIDTP---AIMDLLLKLIS-TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcCCc---HHHHHHHHHHc-cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45666666666544 22222222222 00 02234444556789999999999854 7788899998888775422
Q ss_pred -----------CHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhh
Q 011316 359 -----------SNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 359 -----------~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~ 401 (488)
.......|.+...+..|++.+-. ........++.++..++...
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 24556677777788888775442 33555566777777776543
No 342
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=70.06 E-value=22 Score=24.96 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011316 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 451 (488)
Q Consensus 388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 451 (488)
..++.+|..+-.... -.+.+.+.+.-..+..+..|++++|+..|..++..+
T Consensus 19 ~~~l~~L~~L~~~~~-------------t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~W 69 (75)
T smart00509 19 SRCLDILKKLKKLPI-------------TVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSW 69 (75)
T ss_pred HHHHHHHHHHhcCCC-------------CHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 456666666643322 267788888888899999999999999999998765
No 343
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=69.88 E-value=29 Score=22.94 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=36.6
Q ss_pred HHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011316 416 FAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVEEDEDE 459 (488)
Q Consensus 416 ~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~~~~~~~~~~~ 459 (488)
.++.+.+.|+...+..+- ..++++|.....++++-+..+|.+.+
T Consensus 11 GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~ 55 (58)
T PF04064_consen 11 GREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEG 55 (58)
T ss_pred HHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccC
Confidence 488899999999999994 45689999999999998888776643
No 344
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=69.58 E-value=29 Score=27.81 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHhcCCC-chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011316 89 QLQFEAAWALTNIASGT-SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 167 (488)
Q Consensus 89 ~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l 167 (488)
-++.+.+.++..++..+ |+.- .+.++.++..+.+ ++......+.+|..+.++-... ..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~-----~~---------- 61 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDF-----RR---------- 61 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTS-----HC----------
T ss_pred hHHHHHHHHHHHHHHHHChhhC-----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhh-----hc----------
Confidence 46667777777777622 2211 1356777777766 4666666777777664321100 00
Q ss_pred cccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCC----hhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011316 168 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGV 243 (488)
Q Consensus 168 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 243 (488)
......-+...-..+..- ...++..+.+.+.... ..+...++.++.......+ ...+.+.++
T Consensus 62 -~~~~~~r~~~l~~~l~~~-----------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~ 127 (148)
T PF08389_consen 62 -SSLSQERRRELKDALRSN-----------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNL 127 (148)
T ss_dssp -CHSHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSH
T ss_pred -hhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHH
Confidence 000011111111111111 1233444445444322 7788888888888776433 355667778
Q ss_pred HHHHHHhcCCCCcchHhHHHHHH
Q 011316 244 CPRLVELLRHPSPSVLIPALRTV 266 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L 266 (488)
++.+.+++.+ +..+..|+.+|
T Consensus 128 l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 128 LNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHHHHHhC
Confidence 8999998844 44688887765
No 345
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.56 E-value=33 Score=36.20 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=95.9
Q ss_pred ccHHHHHHcCCHHHHHHhhcCC-CC------hhHHHHHHHHHHHhcCCCchhhHHHHhC--------CCHHHHHHhhCC-
Q 011316 64 PPINEVIQSGVVPRFIEFLSRD-DF------PQLQFEAAWALTNIASGTSENTRVVIDH--------GAVPIFVRLLSS- 127 (488)
Q Consensus 64 ~~~~~~~~~~~i~~L~~lL~~~-~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~--------g~i~~L~~lL~~- 127 (488)
+....+...+++..++++.+.+ +| .+....|+.+|.-+.. -|..+..++.. .++..++..-..
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 3456667778888888887643 11 2455666766666655 67776666432 134444443221
Q ss_pred ---CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh--HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchH
Q 011316 128 ---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL--MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPAL 202 (488)
Q Consensus 128 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i--~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 202 (488)
-+++++..|+.+|-|+....|.++...+..-.- ..=-..+...+......+.+.-.++-.+. ..++
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~---------ndGI 741 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRG---------NDGI 741 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhc---------CccH
Confidence 479999999999999988877765543321000 00000111223334445555555554444 3678
Q ss_pred HHHHHhhccC-----ChhHHHHHHHHHHHhccCCc
Q 011316 203 PALERLIHSN-----DDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 203 ~~L~~ll~~~-----~~~v~~~al~~L~~l~~~~~ 232 (488)
..|+++++-. -..++.-|+++|.-|+..+.
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence 8888888743 35788899999999988764
No 346
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=69.33 E-value=48 Score=31.45 Aligned_cols=112 Identities=17% Similarity=0.147 Sum_probs=68.8
Q ss_pred hchHHHHHHhhcc------C-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC----------CCcchHhH
Q 011316 199 RPALPALERLIHS------N-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----------PSPSVLIP 261 (488)
Q Consensus 199 ~~~~~~L~~ll~~------~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----------~~~~v~~~ 261 (488)
..++|.++.++.. . +.......++.+..|..+..-..+..+. .+++.++.++-. ..+.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 4566666666642 2 5677788888888888776655554444 477777777622 33579999
Q ss_pred HHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchh-hHHHHHHHHHHHH
Q 011316 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNI 312 (488)
Q Consensus 262 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-~v~~~a~~~L~nl 312 (488)
|..+++.++......... +...+...+.+.+.++..+ .....|+..|..+
T Consensus 288 AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999998754332221 2234455566555544222 3366666666655
No 347
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=69.22 E-value=1.4e+02 Score=30.62 Aligned_cols=161 Identities=18% Similarity=0.171 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHH---hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHH
Q 011316 88 PQLQFEAAWALTNIASGTSENTRVVI---DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 164 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~---~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 164 (488)
.+.+.-|+.+|.-+....+.+-.... .+.++..++..+. .++..+-.++++|.|+..+ +..++.+... ...++
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESIL 633 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHh
Confidence 56777777777776663332222221 1234445555554 4567778899999999877 4455555443 33333
Q ss_pred HHhc---ccccHhHHHHHHHHHHHhhc--CCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHH
Q 011316 165 AQFN---EHAKLSMLRNATWTLSNFCR--GKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAV 238 (488)
Q Consensus 165 ~~l~---~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~ 238 (488)
..+. ..++..++........|++- -....+.....-+...+..++.. ++-+....++.+|++++..+....+ +
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~-~ 712 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ-L 712 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH-H
Confidence 3221 12233443333322223221 11111111112222222222322 2344567778888888887754433 4
Q ss_pred HHhCCHHHHHHhcCC
Q 011316 239 IEAGVCPRLVELLRH 253 (488)
Q Consensus 239 ~~~~~l~~L~~lL~~ 253 (488)
.+.--+..+.+-+++
T Consensus 713 A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 713 AKNRSVDSIAKKLKE 727 (745)
T ss_pred HHhcCHHHHHHHHHH
Confidence 444445666655544
No 348
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.19 E-value=92 Score=29.57 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=68.2
Q ss_pred ChHHHHHHhccc-----c-cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------cCChhHHHHHHH
Q 011316 159 ALMPLLAQFNEH-----A-KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------SNDDEVLTDACW 222 (488)
Q Consensus 159 ~i~~l~~~l~~~-----~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~----------~~~~~v~~~al~ 222 (488)
.++.++..+... . +.......+..+..|..+..-........++|.++.++- .+++.+|..|..
T Consensus 211 LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ 290 (343)
T cd08050 211 LLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAAR 290 (343)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHH
Confidence 355566555321 1 466677778888888888755556667778888887763 134688999999
Q ss_pred HHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC-c-chHhHHHHHHhHh
Q 011316 223 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-P-SVLIPALRTVGNI 269 (488)
Q Consensus 223 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~-~v~~~a~~~L~~l 269 (488)
++..++........ -+...+...+.+.+.++. + ....-|+..|..+
T Consensus 291 ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 291 LLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999965433322 223355556666665533 2 2345555555544
No 349
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=68.13 E-value=1.1e+02 Score=33.56 Aligned_cols=143 Identities=8% Similarity=0.004 Sum_probs=87.3
Q ss_pred cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChH
Q 011316 294 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK 373 (488)
Q Consensus 294 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~ 373 (488)
++- .+.+|..++.-|+--+...|+ .+++...+..+-..|.+.+..||..++.+|..|.........-.+..+..-.
T Consensus 297 RDV-~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 297 RDV-DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred ccC-chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 444 788999999888877765454 3455556777778888889999999999999998764222222223334555
Q ss_pred HHHhhc-CCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH-h
Q 011316 374 PLCDLL-NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET-Y 451 (488)
Q Consensus 374 ~L~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~-~ 451 (488)
.++.+. .+.+..|+...+..+. ..... ..+. ..-+..+-.++.+.++.++..|...+.. +
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~--~~~~~---------------g~L~-d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCL--LLSSS---------------GLLS-DKDILIVYSLIYDSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHH--HHhcc---------------cccC-hhHHHHHHHHHhccCcchHHHHHHHHHHHh
Confidence 666666 3334444444332222 21111 1111 1124567788888888888877776644 4
Q ss_pred cCCCCCC
Q 011316 452 WVEEDED 458 (488)
Q Consensus 452 ~~~~~~~ 458 (488)
++...+.
T Consensus 435 ~~~~a~~ 441 (1048)
T KOG2011|consen 435 FERVANS 441 (1048)
T ss_pred hccccch
Confidence 4444443
No 350
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=67.94 E-value=79 Score=33.14 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=52.8
Q ss_pred CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011316 255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 315 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 315 (488)
.+..|..++..|+.+....+...-.+.+..+++.|++.|....+..+...|+.+|..+.-.
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 4568899999999999998989888999999999999998776777888888888888754
No 351
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=67.76 E-value=11 Score=27.22 Aligned_cols=66 Identities=9% Similarity=0.147 Sum_probs=42.9
Q ss_pred hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----ccCChhHHHHHHHHHH
Q 011316 156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWALS 225 (488)
Q Consensus 156 ~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~v~~~al~~L~ 225 (488)
+...+.|+..++....+.++++..+.++.++..... .....+-+.+...+ .+++..+...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 344677888887677789999999999999887642 11223344444443 3456667766666553
No 352
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=67.64 E-value=25 Score=28.17 Aligned_cols=125 Identities=18% Similarity=0.248 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc---------hhHHHH----HH
Q 011316 175 MLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN---------DKIQAV----IE 240 (488)
Q Consensus 175 v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~---------~~~~~~----~~ 240 (488)
++...+.++..++... |... ..+++.++.++.+ ++......+.+|..+.+.-. .+...+ .+
T Consensus 4 i~~kl~~~l~~i~~~~~P~~W----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQW----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTS----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhC----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 5566667777766554 3333 2466666677665 35555556666655542211 111111 11
Q ss_pred --hCCHHHHHHhcCCCC----cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316 241 --AGVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 241 --~~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
..++..+.+.+.... +.....++.++......- ....+.+.++++.+..++.++ .++..|+.+|
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~--~~~~i~~~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWI--PIELIINSNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC--CHHHhccHHHHHHHHHHcCCH---HHHHHHHHhC
Confidence 134444555554422 678889999999988733 345566778999999999655 4577777654
No 353
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=67.35 E-value=55 Score=27.19 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHHhccCC-----Cc---cHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH-
Q 011316 43 DRNIQLDATTQFRKLLSIER-----SP---PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI- 113 (488)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~-----~~---~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~- 113 (488)
+...+.-++..+..++...+ .+ ....+++..+.+.+.+.+.+++ +.+-..+++++..+.. ..+..+.
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~---~~~~~Lk~ 110 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLS---RFRSHLKL 110 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 34566778888888776541 12 3455667788889999988888 8999999999999986 3333332
Q ss_pred hCC-CHHHHHH-hhCCCC--HHHHHHHHHHHhhhhCCCchhHHHHH
Q 011316 114 DHG-AVPIFVR-LLSSPT--DDVREQAVWALGNVAGDSPKCRDLVL 155 (488)
Q Consensus 114 ~~g-~i~~L~~-lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~ 155 (488)
+.+ .++.+.. ++++++ ..-|..++.++..++.++.-..+...
T Consensus 111 ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~ 156 (168)
T PF12783_consen 111 ELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFV 156 (168)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 112 2344444 566533 56888899999999987654444433
No 354
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=66.98 E-value=68 Score=29.16 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHHHHhhhhhhccC----CCCccchHHHHHHhhccHHHHHHhhcCCC-HHHHHHHHHHHHHhcCCC
Q 011316 383 DPRIVTVCLEGLENILKAGEAEKNMG----NTGGVNLFAQAIDDAEGLEKIENLQSHDN-TEIYEKAVKILETYWVEE 455 (488)
Q Consensus 383 ~~~v~~~al~~L~~l~~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~l~~l~~~~~-~~v~~~a~~~l~~~~~~~ 455 (488)
|..+.+.++..++|++...+...... .....+.+...|.++|.++.|..+..+.+ .+.......++.-+|.+-
T Consensus 133 d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 133 DNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 45788999999999988743222111 01122456777888999999999987763 333345566666666544
No 355
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=66.25 E-value=17 Score=23.38 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=30.2
Q ss_pred HHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q 011316 417 AQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETY 451 (488)
Q Consensus 417 ~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~ 451 (488)
.+.+.+.|.-..+..+..+ ++++++..|..++.++
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6778889998999999888 9999999999999875
No 356
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.81 E-value=59 Score=30.98 Aligned_cols=114 Identities=14% Similarity=0.175 Sum_probs=79.5
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHH
Q 011316 285 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 364 (488)
Q Consensus 285 ~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 364 (488)
-+.-++..+++. +..+|..|...+..+....+.....-. ..+++.+..+..+.+..+|......+-.+.....++...
T Consensus 59 tlkeLl~qlkHh-NakvRkdal~glkd~l~s~p~~l~~~~-~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHH-NAKVRKDALNGLKDLLKSHPAELQSHL-YALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCc-hHhhhHHHHHHHHHHHHhChHHHHHHH-HHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhc
Confidence 456688888898 999999999999988775454433211 236777888888888899999999988877654444311
Q ss_pred HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 365 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 365 ~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
.+ -.=.++.+...+.+-.++++..++..+..++...
T Consensus 137 p~-~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 137 PM-VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred ch-HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 11 1123445555666777888888888888777654
No 357
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=64.30 E-value=34 Score=24.06 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=30.8
Q ss_pred HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011316 417 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 451 (488)
Q Consensus 417 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 451 (488)
.+.+.+.+.-..+..+..|++++++..|..++..+
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~W 71 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSW 71 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 67788888888899999999999999999998765
No 358
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=63.82 E-value=1.1e+02 Score=27.41 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=57.4
Q ss_pred CCCHHHHHHhhCCCCHH--------HHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-ccHhHHHHHHHHHHH
Q 011316 115 HGAVPIFVRLLSSPTDD--------VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSN 185 (488)
Q Consensus 115 ~g~i~~L~~lL~~~~~~--------~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~v~~~a~~~L~~ 185 (488)
...++.++++++.++.. +-+...++++.++. |-+..+.+++.+. -+.-++..|+.+|..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 35689999999764432 22233334444433 4456666666332 356688999999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011316 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 227 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l 227 (488)
+....+........-+-..+-..+..++..+....+..+..+
T Consensus 140 l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL 181 (249)
T PF06685_consen 140 LVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDL 181 (249)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhc
Confidence 998876555444444444444445444444444444444443
No 359
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=63.44 E-value=1.1e+02 Score=30.11 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011316 44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 123 (488)
Q Consensus 44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 123 (488)
...|..|+++|..+++.-..+....+.+ +.|...|++++ ..-|..|+.++...+...........-..+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 3568889999999888753444433332 26888999988 677888888888888733222111101133466666
Q ss_pred hhCC
Q 011316 124 LLSS 127 (488)
Q Consensus 124 lL~~ 127 (488)
.|..
T Consensus 176 ~L~~ 179 (441)
T PF12054_consen 176 ILEN 179 (441)
T ss_pred HHcC
Confidence 7764
No 360
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=63.02 E-value=1.5e+02 Score=28.57 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHhcC--CCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC
Q 011316 87 FPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD 146 (488)
Q Consensus 87 ~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~ 146 (488)
+|.++..--..|.-+.+ -++...+..++..++-.|+.++.++++.-|+..-.+|.++.+.
T Consensus 146 wphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygK 207 (457)
T KOG2085|consen 146 WPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGK 207 (457)
T ss_pred chHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 45555433333333333 2355666777888999999999999999999988888888653
No 361
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=62.95 E-value=46 Score=25.32 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=52.6
Q ss_pred CChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCC
Q 011316 284 QALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 284 ~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 358 (488)
|++..+...+.+.. +..-|+.+..++..+..-..... ..+.|.++.+|++. .++++..|+.+...+...-
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-----~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-----SSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 45556666665552 33458888888888876212221 12567777777765 6779999999999888766
Q ss_pred CHHHHHHHHH
Q 011316 359 SNEQIKFLVS 368 (488)
Q Consensus 359 ~~~~~~~l~~ 368 (488)
+.+....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T smart00802 86 KEEELGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6655555544
No 362
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=62.53 E-value=1.4e+02 Score=27.98 Aligned_cols=157 Identities=11% Similarity=0.106 Sum_probs=89.8
Q ss_pred chHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHh-----------CCHHHHHHhcC------CCCcch
Q 011316 200 PALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEA-----------GVCPRLVELLR------HPSPSV 258 (488)
Q Consensus 200 ~~~~~L~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-----------~~l~~L~~lL~------~~~~~v 258 (488)
.++..|+.++-. ..-.+|..|+.++.....++++....+++. .....++..|- +.++--
T Consensus 34 pvi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 34 PVIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp EHHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred cHHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 444444444322 246778888888888887766555545432 11122444444 233434
Q ss_pred HhHHHHHHhHhhcCCchhhHHHhhC------------CChHHHHHHhcc----cchhhHHHHHHHHHHHHhcCCHHHHHH
Q 011316 259 LIPALRTVGNIVTGDDMQTQCIINH------------QALPCLLDLLTQ----NYKKSIKKEACWTISNITAGNVNQIQA 322 (488)
Q Consensus 259 ~~~a~~~L~~l~~~~~~~~~~~~~~------------~~~~~L~~lL~~----~~~~~v~~~a~~~L~nl~~~~~~~~~~ 322 (488)
...|+.++..+...+++.+..+..- ..++.+..+|.. ..+++++..-+..|+--..+++.....
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 5578888999999888776655521 235556665543 336666666666666666677888888
Q ss_pred HHHcC-ChHHHHHHHhcC---ChhHHHHHHHHHHHhcc
Q 011316 323 IIEAG-IIGPLVNLLLNA---EFEIKKEAAWAISNATS 356 (488)
Q Consensus 323 l~~~~-~l~~L~~ll~~~---~~~v~~~a~~aL~~l~~ 356 (488)
++..+ .++.|++..... +.-|+.-++..|+-...
T Consensus 194 FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 194 FLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 87654 688888875432 45566666666665543
No 363
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=61.71 E-value=75 Score=24.85 Aligned_cols=100 Identities=21% Similarity=0.224 Sum_probs=60.3
Q ss_pred hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc---CCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCcc
Q 011316 337 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL---NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV 413 (488)
Q Consensus 337 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll---~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~ 413 (488)
.+++.......+.-|+..+... ..... +++.|..-| +.+++.++..++..|..++..+...
T Consensus 13 ~~d~~gp~~~~l~eIa~~t~~~--~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~--------- 76 (125)
T PF01417_consen 13 SNDPWGPPGKLLAEIAQLTYNS--KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSER--------- 76 (125)
T ss_dssp SSSSSS--HHHHHHHHHHTTSC--HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HH---------
T ss_pred CCCCCCcCHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHH---------
Confidence 3334445556667777777654 33333 356666666 5667888999999999999887753
Q ss_pred chHHHHHH-hhccHHHHHHhhc--C----CCHHHHHHHHHHHHHhcCC
Q 011316 414 NLFAQAID-DAEGLEKIENLQS--H----DNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 414 ~~~~~~l~-~~g~~~~l~~l~~--~----~~~~v~~~a~~~l~~~~~~ 454 (488)
+...+. ....++.+.++.. . ....|+.+|..+++-+.++
T Consensus 77 --~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~ 122 (125)
T PF01417_consen 77 --FVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDD 122 (125)
T ss_dssp --HHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSH
T ss_pred --HHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCc
Confidence 344443 2334444444433 1 1245999999999877654
No 364
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=61.70 E-value=2.3e+02 Score=30.44 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=87.3
Q ss_pred hchHHHHHHhhccC-ChhHHHHHHHHHHHhccC-----Cc-hhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHHHhHh
Q 011316 199 RPALPALERLIHSN-DDEVLTDACWALSYLSDG-----TN-DKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNI 269 (488)
Q Consensus 199 ~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~-----~~-~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l 269 (488)
...++.++.++... ++.++..+...|+.+++. .+ ...+.+...+.+..|+..+-.. .......++..+..+
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~s~lVs~i~vlI~l 268 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSLSVLVSGIIVLISL 268 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcchhhHHHHHHHHHHh
Confidence 67899999998753 678888888888888765 22 2444555666777766665432 223333333333333
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCChhHHHH
Q 011316 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKKE 346 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~ll~~~~~~v~~~ 346 (488)
.. ..+..+........+.+-.... ++.+....+.++..-.. +..+-+.+.. .++.=...+..+=...|.+
T Consensus 269 l~---~~r~~~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L~---dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlk 341 (838)
T KOG2073|consen 269 LN---PRRDTVETNSTTTILSQPPSER-DPIVLNELLGAMEPRLG---DFVQLLLEPEKLDLLETTYGELEPPLGFERLK 341 (838)
T ss_pred cC---cccccccccceeeeecCCcccc-CccchHHHHHHHHHHHH---HHHHHhcCCccchhhhhhhhccCCCcchHHHH
Confidence 22 1111100000011111111122 33344444433332211 1111111111 1111111222222346777
Q ss_pred HHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 011316 347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383 (488)
Q Consensus 347 a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~ 383 (488)
.+..++.+....+......+...+.++.+.+++....
T Consensus 342 i~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~ 378 (838)
T KOG2073|consen 342 IVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYP 378 (838)
T ss_pred HHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcc
Confidence 7888888877666666777777777777777776543
No 365
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=61.64 E-value=49 Score=25.14 Aligned_cols=80 Identities=19% Similarity=0.118 Sum_probs=52.9
Q ss_pred CChHHHHHHhcc---cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCC
Q 011316 284 QALPCLLDLLTQ---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 284 ~~~~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~ 358 (488)
|++..+...+.+ ..+...|+.+...+..+..-..+... .+.|.++.+|+.. .++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 445555555554 33667888999999988873233222 2566677777764 5589999999999888776
Q ss_pred CHHHHHHHHH
Q 011316 359 SNEQIKFLVS 368 (488)
Q Consensus 359 ~~~~~~~l~~ 368 (488)
+.+....+.+
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6665555443
No 366
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=61.19 E-value=3.8e+02 Score=33.91 Aligned_cols=289 Identities=7% Similarity=0.054 Sum_probs=141.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccC------CCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIE------RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 104 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~ 104 (488)
.++.|+..+..++......+..++..+.... .......-+-.+.++.++++..++.+ .-+...+..+..+...
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~w-y~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTW-YAKDGGVNGIKCLIES 1063 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhH-HHHcCCCceeeeehhh
Confidence 3577888888888888887777777654322 01111222233566667777766652 4444455555555553
Q ss_pred CchhhHHHH--hCCCHHHHHHhhCCC-------CHHHHHHHHHHHhhhhCC---CchhHHHHHhcCChHHHHHHhccccc
Q 011316 105 TSENTRVVI--DHGAVPIFVRLLSSP-------TDDVREQAVWALGNVAGD---SPKCRDLVLSNGALMPLLAQFNEHAK 172 (488)
Q Consensus 105 ~~~~~~~~~--~~g~i~~L~~lL~~~-------~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~l~~~l~~~~~ 172 (488)
.+ ...+. ...++..+...+... ..+.....+.-+...+.. .++-+. -...+.+.+++..+ .+++
T Consensus 1064 ~~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~-~~~~~~~~~lv~eL-~npN 1139 (3550)
T KOG0889|consen 1064 MP--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERA-KSAMNVFSPLVLEL-FNPN 1139 (3550)
T ss_pred ch--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHH-cCCc
Confidence 44 22222 224555555555431 112222222222222211 111111 12234677778777 6777
Q ss_pred HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHH-HHh----hccCChhHHHHHHHHHHHhccCCch-------hHHHHHH
Q 011316 173 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL-ERL----IHSNDDEVLTDACWALSYLSDGTND-------KIQAVIE 240 (488)
Q Consensus 173 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L-~~l----l~~~~~~v~~~al~~L~~l~~~~~~-------~~~~~~~ 240 (488)
..|+..+...|.+++..............-+.+ ... ++...-.++...+.++.......+. .......
T Consensus 1140 ~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~ 1219 (3550)
T KOG0889|consen 1140 SDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRF 1219 (3550)
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHH
Confidence 899999999999988765222222222222222 111 2222333444444444443322221 1110000
Q ss_pred h---------CCHHHHHHhcCCCC----cchHhHHHHHHhHhhcCCchhhHHH--hhCCChHHHHHHhcccchhhHHHHH
Q 011316 241 A---------GVCPRLVELLRHPS----PSVLIPALRTVGNIVTGDDMQTQCI--INHQALPCLLDLLTQNYKKSIKKEA 305 (488)
Q Consensus 241 ~---------~~l~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~~L~~lL~~~~~~~v~~~a 305 (488)
. ..+- +.+...... ...|..+...++......+...... ...+++..+.+.+..+ .+++...+
T Consensus 1220 ~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~ 1297 (3550)
T KOG0889|consen 1220 LIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVA 1297 (3550)
T ss_pred HHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHH
Confidence 0 0111 222222111 2346667777766665444322111 2346777888888877 77888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHc
Q 011316 306 CWTISNITAGNVNQIQAIIEA 326 (488)
Q Consensus 306 ~~~L~nl~~~~~~~~~~l~~~ 326 (488)
..++......+...-...++.
T Consensus 1298 ~~~l~~v~~~~~~~~ke~lq~ 1318 (3550)
T KOG0889|consen 1298 LEGLRKVLAQDVKLPKELLQS 1318 (3550)
T ss_pred HHHHHhhhhccccccHHHHHh
Confidence 888777766533333334443
No 367
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=61.08 E-value=5.4 Score=32.17 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=83.1
Q ss_pred CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHH
Q 011316 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLN-AEFEIKKEAAW 349 (488)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~ 349 (488)
++...+...+.+++..++++++......++.....+++-+.. .++...-.++.++.+..++..--+ .++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 344566677889999999999885477888888888887765 345555556666677766654333 37788888888
Q ss_pred HHHHhccCCCHHHHHHHHH--CCChHHHHh---hcCCCCHHHHHHHHHHHHHH
Q 011316 350 AISNATSGGSNEQIKFLVS--QGCIKPLCD---LLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 350 aL~~l~~~~~~~~~~~l~~--~~~~~~L~~---ll~~~~~~v~~~al~~L~~l 397 (488)
.|..++..-+++....+.. .+-.|.+.+ ...++|.-+|.++-..+-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888887655554444443 244555544 44577777776665544443
No 368
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.74 E-value=3.1e+02 Score=31.58 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=84.3
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316 286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 365 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 365 (488)
+..+..+..++..+++|..++..+......+.-.....-..++-..+.+++.+.+.++++.|+.+|+-+...+.-....
T Consensus 1528 l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~- 1606 (1710)
T KOG1851|consen 1528 LRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVS- 1606 (1710)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccch-
Confidence 3334433334447888888777766555422111122223346667778888888899999999999998755222111
Q ss_pred HHHCCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011316 366 LVSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443 (488)
Q Consensus 366 l~~~~~~~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 443 (488)
.-......... +.+......+.-+|+.++...+..-. .-+ .+.+..+-..... ..-+++.
T Consensus 1607 ----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP-----------~wi--p~~L~~Ls~fa~e-~~~i~~t 1668 (1710)
T KOG1851|consen 1607 ----DKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVP-----------LWI--PKPLMNLSSFARE-SAAIKQT 1668 (1710)
T ss_pred ----HhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccch-----------hhh--HHHHHHHHhhcCC-chHHHHH
Confidence 01112222222 23334455577777877766553311 111 1113333333333 3678889
Q ss_pred HHHHHHHhcCCCCC
Q 011316 444 AVKILETYWVEEDE 457 (488)
Q Consensus 444 a~~~l~~~~~~~~~ 457 (488)
+.+.+.++-..-.+
T Consensus 1669 vkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1669 VKKTVSEFRRTHAD 1682 (1710)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999887766444
No 369
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.66 E-value=49 Score=32.68 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=56.9
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHH
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLE 395 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~al~~L~ 395 (488)
++..|.+-+++.++.++..|+..|-.++.++.......+.+.+++.-++.+.+.. +.+|+..++..|.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 5667777888888899999999999999999888888889999999999988854 5678888776664
No 370
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=60.07 E-value=1.9e+02 Score=28.90 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=56.8
Q ss_pred CHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhcc-CCCCccchHHHHHHhhccHHHHHHhhc
Q 011316 359 SNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNM-GNTGGVNLFAQAIDDAEGLEKIENLQS 434 (488)
Q Consensus 359 ~~~~~~~l~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~l~~l~~ 434 (488)
.......+.+.++++.|++.|+ ..++++...|...|..++......... ....++|+..+.+.+...++.|.+.+-
T Consensus 51 ~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL 128 (475)
T PF04499_consen 51 PTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIML 128 (475)
T ss_pred hHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHh
Confidence 3456677788999999999997 445778888999999998776543322 222356888999998888998888754
No 371
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=58.67 E-value=60 Score=26.34 Aligned_cols=123 Identities=13% Similarity=0.084 Sum_probs=81.2
Q ss_pred CchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCC--chhHHHHHhcCChHHHHHHhcccccHhHHHHHHH
Q 011316 105 TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS--PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 181 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~ 181 (488)
+++.-+.+.+..++..+++.++. ....++...+..++-+..+- +..-..+...+.+..++..--+-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 35566778888999999999987 67778888888777765432 2223345666777777776545668889888888
Q ss_pred HHHHhhcCCCCCCh--hh-----hhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011316 182 TLSNFCRGKPQPLF--EQ-----TRPALPALERLIHSNDDEVLTDACWALSYL 227 (488)
Q Consensus 182 ~L~~l~~~~~~~~~--~~-----~~~~~~~L~~ll~~~~~~v~~~al~~L~~l 227 (488)
.|..++..-..... .. .-+....-+++..+++.-++.++-..+.++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 88888764322211 11 123344445666778887877776666554
No 372
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.36 E-value=89 Score=29.84 Aligned_cols=120 Identities=11% Similarity=0.127 Sum_probs=82.9
Q ss_pred CHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHH
Q 011316 243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQ 321 (488)
Q Consensus 243 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~ 321 (488)
-+.-++..+.+.+..+|..|+.-+..+....+..... --..+++.+..++.+. +..+|......+-.+... .++...
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~-~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS-HLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH-HHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhc
Confidence 3566777788889999999999888887754433221 1234667777777777 888999999888887763 233222
Q ss_pred HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316 322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 365 (488)
Q Consensus 322 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 365 (488)
.++ .=+++.+...+.+-.++++.-++..|..++....+.....
T Consensus 137 p~~-~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~ 179 (393)
T KOG2149|consen 137 PMV-SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRY 179 (393)
T ss_pred chH-HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHH
Confidence 222 2256667777777789999999999999887665544444
No 373
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=58.04 E-value=1.2e+02 Score=30.15 Aligned_cols=63 Identities=17% Similarity=0.109 Sum_probs=39.1
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011316 327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 395 (488)
Q Consensus 327 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~ 395 (488)
.++-.+.+-.+..|..+..++..+++.|.- .+.+..++ +++.|.-+|+.+..+-++.|+..+.
T Consensus 238 rLilqf~r~f~RnDk~~c~~~~kfiahLin---q~VahEIv---~Leil~lLLe~PTddSvevaI~flk 300 (739)
T KOG2140|consen 238 RLILQFKRSFRRNDKVSCLNASKFIAHLIN---QQVAHEIV---ALEILTLLLERPTDDSVEVAIAFLK 300 (739)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHhcCCCCchHHHHHHHHH
Confidence 345555666667777788888888888863 23333333 4777777788765555555554443
No 374
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=56.20 E-value=1.3e+02 Score=25.90 Aligned_cols=141 Identities=17% Similarity=0.153 Sum_probs=87.2
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHH-HHHHhhhhCCCchhHHH
Q 011316 76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA-VWALGNVAGDSPKCRDL 153 (488)
Q Consensus 76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a-~~~L~~l~~~~~~~~~~ 153 (488)
..+..+..++. .+.+..|+.++.......+. ..++.+..++.. ++..+.... ..+++.+....+
T Consensus 54 ~l~~~L~~~~~-~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~----- 119 (213)
T PF08713_consen 54 ELADELWESGY-REERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHP----- 119 (213)
T ss_dssp HHHHHHHCSSC-HHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHG-----
T ss_pred HHHHHHcCCch-HHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhH-----
Confidence 44556677777 78888888887664431110 135666666665 667776665 444555432111
Q ss_pred HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCch
Q 011316 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 233 (488)
Q Consensus 154 ~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 233 (488)
...+.+...+ .+.++=+++.++.++...... ......+..+...+.+++.-++....|+|..++..+++
T Consensus 120 ----~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 120 ----EALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp ----GHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred ----HHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 1233444444 777888888877666544433 22345556666677788999999999999999988877
Q ss_pred hHHHHHHh
Q 011316 234 KIQAVIEA 241 (488)
Q Consensus 234 ~~~~~~~~ 241 (488)
....++..
T Consensus 189 ~v~~~l~~ 196 (213)
T PF08713_consen 189 EVLEFLQK 196 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76655554
No 375
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.23 E-value=2.9e+02 Score=29.58 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-----CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHH
Q 011316 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL 289 (488)
Q Consensus 215 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L 289 (488)
...+.++..+..++.+....-. ..++.+++..-+ .+++....+...++.++..-.+.-.. =.-.++.|
T Consensus 482 ~~tEaci~~~~sva~~~~~t~~-----~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~--ln~sl~~L 554 (982)
T KOG2022|consen 482 NRTEACIFQFQSVAEYLGETES-----TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMY--LNPSLPLL 554 (982)
T ss_pred HHHHHHHHHHHHHHhhcCcchh-----HHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcc--cCchHHHH
Confidence 4455566666666654433222 335666666433 36677777877777776532211111 12457778
Q ss_pred HHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCH
Q 011316 290 LDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 290 ~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~ 360 (488)
++-|..+ +.-..+...+..+++..++......+ +++..+-..+... .+..+.....+++.+.+.-.+
T Consensus 555 ~~~Lh~s---k~s~q~i~tl~tlC~~C~~~L~py~d-~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~p 623 (982)
T KOG2022|consen 555 FQGLHNS---KESEQAISTLKTLCETCPESLDPYAD-QFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKP 623 (982)
T ss_pred HHHhcCc---hHHHHHHHHHHHHHHhhhhhCchHHH-HHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccH
Confidence 8877654 33445666688888765655544444 3555565666554 556788888999888765543
No 376
>PRK14051 negative regulator GrlR; Provisional
Probab=54.82 E-value=6.1 Score=29.16 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCccccCCCCCC--CCCCCCcC
Q 011316 459 EPLPPGDATQAGFGFAGNGLP--VPSGGFNF 487 (488)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 487 (488)
++.|+||-++++|..+ +| +++++|||
T Consensus 59 ~ei~SVf~~eqdy~L~---i~kk~~sn~~~~ 86 (123)
T PRK14051 59 YEIPSVLNIEQDYQLV---IPKKVLSNDNNL 86 (123)
T ss_pred cccccccCccccEEEe---cchhheeCCCCe
Confidence 3699999999999875 66 89999987
No 377
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=54.61 E-value=39 Score=24.46 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=44.3
Q ss_pred hhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh----cCChhHHHHHHHHHH
Q 011316 281 INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL----NAEFEIKKEAAWAIS 352 (488)
Q Consensus 281 ~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~----~~~~~v~~~a~~aL~ 352 (488)
++..++.++..++.+..+.++|...+.++.++.....+. +.+| .+.++.++. +++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~----i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGEN----IKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHH----HHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 344677888888766658899999999999998753433 2333 444555444 346666666665543
No 378
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=54.51 E-value=16 Score=27.64 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHH
Q 011316 92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134 (488)
Q Consensus 92 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~ 134 (488)
...+..+..++. .|+.-..+++.|+++.|+.+|.+++.++..
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 455677888888 888888899999999999999998877643
No 379
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=54.33 E-value=1.3e+02 Score=25.02 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=52.6
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-Hhcccc-hhhHHHHHHHHHHHHh
Q 011316 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNY-KKSIKKEACWTISNIT 313 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~-~~~v~~~a~~~L~nl~ 313 (488)
..+++..+.+.+.+.+.++++.+-..+++++..+........+.-++ -+++.++. ++.++. ...-|..++.++..++
T Consensus 67 ~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 67 INLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 34566678888888887777889999999999988643332222222 23444444 665542 2457778889999998
Q ss_pred cC
Q 011316 314 AG 315 (488)
Q Consensus 314 ~~ 315 (488)
..
T Consensus 146 ~~ 147 (168)
T PF12783_consen 146 KD 147 (168)
T ss_pred hC
Confidence 75
No 380
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.31 E-value=51 Score=32.53 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=50.6
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cC-CCHHHHHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SH-DNTEIYEKAVKIL 448 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~-~~~~v~~~a~~~l 448 (488)
++..|.+-+.+.++.++..|+..|..+++.+... |...+.+.+.++.+..+. ++ .+.+|+.++..+|
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~-----------fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI 107 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYS-----------FHLQVASKEFLNEMVKRPKNKPRDLKVREKILELI 107 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHH
Confidence 4566666777777788888888888887766543 565666666666666653 33 5677888888888
Q ss_pred HHhcCC
Q 011316 449 ETYWVE 454 (488)
Q Consensus 449 ~~~~~~ 454 (488)
+.+...
T Consensus 108 ~~W~~a 113 (470)
T KOG1087|consen 108 DTWQQA 113 (470)
T ss_pred HHHHHH
Confidence 776553
No 381
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=53.60 E-value=16 Score=31.76 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=53.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
...+.+.+.+.|+++-.+..++..+....... ... ..+..+...+.+++ ..+|....|+|..++..+++..
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~---~~~-----~~l~~~~~~~~d~~-~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRKE---DFD-----ELLEIIEALLKDEE-YYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC---HHH-----HHHHHHHHCTTGS--HHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc---CHH-----HHHHHHHHHcCCch-HHHHHHHHHHHHHHHHhCHHHH
Confidence 44566777888999988888887776655431 111 23444455667777 8999999999999999887776
Q ss_pred HHHHhC
Q 011316 110 RVVIDH 115 (488)
Q Consensus 110 ~~~~~~ 115 (488)
..+++.
T Consensus 191 ~~~l~~ 196 (213)
T PF08713_consen 191 LEFLQK 196 (213)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 382
>PLN03205 ATR interacting protein; Provisional
Probab=53.31 E-value=2.1e+02 Score=27.38 Aligned_cols=111 Identities=11% Similarity=0.068 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccC-C-CccHHHHHHcCCHHHHHHhhc----CCCChhHHHHHHHHHHHhcCCC
Q 011316 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIE-R-SPPINEVIQSGVVPRFIEFLS----RDDFPQLQFEAAWALTNIASGT 105 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~-~-~~~~~~~~~~~~i~~L~~lL~----~~~~~~v~~~a~~~L~~l~~~~ 105 (488)
++.|+.+..-++..+...+++.|..++..- + ......-.+.+.+ .|++++. ......++..|+.++..+...+
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWv-sLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWH-SLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHH-HHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 344555556677777778888777765532 1 1111111122222 2333332 2222678889998887776633
Q ss_pred --chhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhh
Q 011316 106 --SENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNV 143 (488)
Q Consensus 106 --~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l 143 (488)
...|+.+....+++.+-++|+. .-..++..++..|.-+
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLL 444 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLL 444 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 3446777777888999999986 4567788887766554
No 383
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.27 E-value=18 Score=33.64 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCCchhhHHHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011316 94 AAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLS 156 (488)
Q Consensus 94 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 156 (488)
..+.+++++...++..+.+.+-|+++.++.-. .+.+|-+++.++.++.++..++.+.++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 56689999998999999999999999888743 4578999999999999999888776665543
No 384
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.47 E-value=1.7e+02 Score=32.16 Aligned_cols=136 Identities=11% Similarity=0.008 Sum_probs=87.0
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH-HHHhcCChH
Q 011316 83 SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD-LVLSNGALM 161 (488)
Q Consensus 83 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~i~ 161 (488)
.+-. +++|..++..|+.-....| ..+.+...+..+=..|++.+.+||..++.+|-.|......... ...-..+=.
T Consensus 297 RDV~-~~IRaiCiqeLgiWi~~yP---~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 297 RDVD-PDIRAICIQELGIWIKSYP---EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred ccCc-hHHHHHHHHHHHHHHHhcc---HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 4556 8999999888888776444 4567777888888899999999999999999999876321100 111112233
Q ss_pred HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011316 162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 227 (488)
Q Consensus 162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l 227 (488)
.++.+...+-+..|+...+..+....... .....-+..+..++-+.++.++..+...+..-
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g-----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSG-----LLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhccc-----ccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 45555545566777766665554443322 11122344466777777777777777666643
No 385
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=52.25 E-value=26 Score=19.07 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHH
Q 011316 300 SIKKEACWTISNI 312 (488)
Q Consensus 300 ~v~~~a~~~L~nl 312 (488)
.+|..|+++|+++
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 5789999999998
No 386
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=51.52 E-value=71 Score=30.12 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhccCCCccHHHHHHcC--CHHHHHHhhcCCC--ChhHHHHHHHHHHHhcCCCchhhHHH------HhCC
Q 011316 47 QLDATTQFRKLLSIERSPPINEVIQSG--VVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENTRVV------IDHG 116 (488)
Q Consensus 47 ~~~a~~~L~~l~~~~~~~~~~~~~~~~--~i~~L~~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~------~~~g 116 (488)
|+.|+..+..+. .+ ......+...+ ++..|+++++.++ ...+|..|+.+|..++.......+.+ +..|
T Consensus 239 RllAi~~l~~~~-~~-~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 239 RLLAIANLVYIH-PE-SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHhhC-CC-HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 334444444422 22 34455666555 9999999998654 26899999999999998655554433 2446
Q ss_pred CHHHHHHh
Q 011316 117 AVPIFVRL 124 (488)
Q Consensus 117 ~i~~L~~l 124 (488)
++..+++.
T Consensus 317 iL~~llR~ 324 (329)
T PF06012_consen 317 ILPQLLRK 324 (329)
T ss_pred cHHHHHHH
Confidence 66666553
No 387
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.30 E-value=3e+02 Score=28.56 Aligned_cols=231 Identities=10% Similarity=0.088 Sum_probs=123.1
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHH
Q 011316 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAV 238 (488)
Q Consensus 160 i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~ 238 (488)
++.+.+.|..+.|+..+..|-.+|..++.++ ..++...-++..+ .+--+--|..+|..+....... ...
T Consensus 7 Le~lCk~LY~s~D~~~R~~AE~~L~e~s~sp---------eclskCqlll~~gs~pYs~mlAst~L~Klvs~~t~l-pl~ 76 (1082)
T KOG1410|consen 7 LESLCKDLYESTDPTARHRAEKALAELSESP---------ECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTPL-PLE 76 (1082)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHccCH---------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCCC-cHH
Confidence 5566777777889999999999999988774 4566666666654 3444555666666666443311 222
Q ss_pred HHhCCHHHHHHhcCCCCcchHh----HHHHHHhHhhcCC---chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316 239 IEAGVCPRLVELLRHPSPSVLI----PALRTVGNIVTGD---DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 239 ~~~~~l~~L~~lL~~~~~~v~~----~a~~~L~~l~~~~---~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
.+.++-..+++.+....|...- .-+..++.+.... ....+..+ .+.+..+.+.++.+ +.+-...+..+|..
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~F-Rd~v~~~~kfl~~~-~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVF-RDPVDDVTKFLQMD-NVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchh-hhhHHHHHHHhccC-chHHHHHHHHHHHH
Confidence 3334556667777665544333 3334444443311 11111111 14556666777666 55555555666665
Q ss_pred HhcC---------CHHHHHH---HHHc---CChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCC-------------
Q 011316 312 ITAG---------NVNQIQA---IIEA---GIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGG------------- 358 (488)
Q Consensus 312 l~~~---------~~~~~~~---l~~~---~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~------------- 358 (488)
+... ....++. +.+. .++..-+.+++.. +.+-+..-...+.++..++
T Consensus 155 LvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs 234 (1082)
T KOG1410|consen 155 LVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDES 234 (1082)
T ss_pred HHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccc
Confidence 5431 1111111 1111 1233333444432 1222222222222222211
Q ss_pred ---------CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 359 ---------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 359 ---------~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
...-+..+.+...+..+.++..+-.++..+.++.+|..+...-.
T Consensus 235 sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRR 287 (1082)
T KOG1410|consen 235 SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRR 287 (1082)
T ss_pred cccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHH
Confidence 22334555666778889999998888888889999888865433
No 388
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=50.60 E-value=2.8e+02 Score=27.94 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=85.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc----c---ccHhHHHHHHHHHHHhhcCCCC
Q 011316 120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----H---AKLSMLRNATWTLSNFCRGKPQ 192 (488)
Q Consensus 120 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----~---~~~~v~~~a~~~L~~l~~~~~~ 192 (488)
.+.+.+...++..+..|+..|.. + +.... .++.++.++.. + .+-....+....++.|..+..-
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T---D-sGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET---D-SGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc---C-ccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34444444666666666655543 1 22211 24455555432 1 3556677788888888888755
Q ss_pred CChhhhhchHHHHHHhhc----------cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHh
Q 011316 193 PLFEQTRPALPALERLIH----------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLI 260 (488)
Q Consensus 193 ~~~~~~~~~~~~L~~ll~----------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~ 260 (488)
.-..+...++|.++.++- ++.+.+|.-|+..+..++......... ....++..+.+.+.+. ......
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 555566778888877653 234678899999999998776655443 4456777777777654 345555
Q ss_pred HHHHHHhHhh
Q 011316 261 PALRTVGNIV 270 (488)
Q Consensus 261 ~a~~~L~~l~ 270 (488)
-++..|..+.
T Consensus 360 Gai~gL~~lg 369 (576)
T KOG2549|consen 360 GAIAGLSELG 369 (576)
T ss_pred hHHHHHHHhh
Confidence 5666665554
No 389
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.50 E-value=4.4e+02 Score=30.19 Aligned_cols=199 Identities=10% Similarity=0.111 Sum_probs=102.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+..+++.|...|+..+..|+..|.++....+.+....+. .-......++..+++ .++|...-.++..+...-.....
T Consensus 42 el~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il-~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lkk~ls 119 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGIL-PEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLKKKLS 119 (1312)
T ss_pred HHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhH-HHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999999999987655333222211 111223345556677 89999999999888762221111
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC--ChHHHHHHhc------------------cc
Q 011316 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFN------------------EH 170 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~------------------~~ 170 (488)
...+ ..++...-.-.+.+..+...|...+...... ...+......+ ....+.+.+. +.
T Consensus 120 p~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~-ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~ 197 (1312)
T KOG0803|consen 120 PFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAE-EKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELES 197 (1312)
T ss_pred HHHH-hhhhhhhheecccchHHHHHHHHHHHhhcCh-hhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHH
Confidence 1111 2223322222334455555555555444321 11111111111 1111111110 01
Q ss_pred ccHhHHHHHHHHHHHhhcCC-CCCChh---h-h--hchHHHHHHhhccCChhHHHHHHHHHHHhccCCch
Q 011316 171 AKLSMLRNATWTLSNFCRGK-PQPLFE---Q-T--RPALPALERLIHSNDDEVLTDACWALSYLSDGTND 233 (488)
Q Consensus 171 ~~~~v~~~a~~~L~~l~~~~-~~~~~~---~-~--~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 233 (488)
....+...++.++..+.... ...... . . --.-..+..++++..+.+..+...++..+...-..
T Consensus 198 k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~ 267 (1312)
T KOG0803|consen 198 KYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN 267 (1312)
T ss_pred hhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence 12344455555665555322 111111 0 1 11234566777888889999988888888765443
No 390
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=50.46 E-value=2e+02 Score=26.17 Aligned_cols=62 Identities=23% Similarity=0.362 Sum_probs=40.9
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316 28 QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 28 ~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
..+.+..|.+.|+.+|+..+ ...+++... .+++.+.+|.|+..=. + +++...+++.+.+++.
T Consensus 11 cl~~LkdL~r~lr~dd~~~~-~v~r~lg~~----------~iv~~DLiPiL~~~~~--~-~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 11 CLECLKDLKRFLRRDDEDQR-DVRRQLGEW----------NIVQKDLIPILISYKD--D-DKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHHHhCcchH-HHHHHHHHh----------chhhhhHHHHHHhccC--c-hHHHHHHHHHHHHhCC
Confidence 45677888888888777665 444444431 1344566776655422 4 7888999999999986
No 391
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=48.78 E-value=20 Score=19.15 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhc
Q 011316 301 IKKEACWTISNITA 314 (488)
Q Consensus 301 v~~~a~~~L~nl~~ 314 (488)
||..|+++|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 57889999998843
No 392
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=48.74 E-value=22 Score=26.93 Aligned_cols=43 Identities=23% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 011316 345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 389 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~ 389 (488)
...+..+..++. .|+.+..+.+.|++..|+.+|.+++.++...
T Consensus 64 d~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 64 DEEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 345666777776 4588999999999999999999999877543
No 393
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=48.71 E-value=3e+02 Score=27.74 Aligned_cols=143 Identities=14% Similarity=0.135 Sum_probs=82.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-------ChhHHHHHHHHHHHhcCCC
Q 011316 33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALTNIASGT 105 (488)
Q Consensus 33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-------~~~v~~~a~~~L~~l~~~~ 105 (488)
..+.+.+.++++..+..|+..|.. + .-.+ -.+|.++.++..+- +-......++.+..|.. +
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T----D--sGL~-----~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~-N 277 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET----D--SGLQ-----QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLD-N 277 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc----C--ccHH-----HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhc-C
Confidence 356666677888888888776554 1 1122 24677777765432 24455566666677776 6
Q ss_pred chhhHHHHhCCCHHHHHHhhCC----------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-ccHh
Q 011316 106 SENTRVVIDHGAVPIFVRLLSS----------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLS 174 (488)
Q Consensus 106 ~~~~~~~~~~g~i~~L~~lL~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~ 174 (488)
+...-.-.-..++|.++.++-+ ....+|..|+..+..++.+-...... +...++..+.+.+.+. ....
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~s 356 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLS 356 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCch
Confidence 6554444444567888776633 34679999999999988654432222 3333455555555333 2334
Q ss_pred HHHHHHHHHHHhhc
Q 011316 175 MLRNATWTLSNFCR 188 (488)
Q Consensus 175 v~~~a~~~L~~l~~ 188 (488)
...-++..|..|..
T Consensus 357 t~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 357 THYGAIAGLSELGH 370 (576)
T ss_pred hhhhHHHHHHHhhh
Confidence 44444455554443
No 394
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=47.71 E-value=3.4e+02 Score=28.14 Aligned_cols=79 Identities=9% Similarity=0.029 Sum_probs=51.6
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH------HHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhh
Q 011316 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA------VIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIV 270 (488)
Q Consensus 198 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~------~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~ 270 (488)
..+-+..+++.++++|++++..++..+....+.+...+-. +.+ .-...|..+-.+ .++..+...+.+|+.++
T Consensus 46 lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLr-phy~~Lk~i~~~~~~~n~Kk~laDIlSvLa 124 (878)
T KOG2005|consen 46 LKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLR-PHYGVLKEIYESMADSNLKKWLADILSVLA 124 (878)
T ss_pred hhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhc-cchhHHHHHHHhccCchhHhHHHHHHHHHh
Confidence 3567889999999999999999999999887554322211 111 112223333222 34567888889999888
Q ss_pred cCCchhh
Q 011316 271 TGDDMQT 277 (488)
Q Consensus 271 ~~~~~~~ 277 (488)
....+..
T Consensus 125 mt~se~~ 131 (878)
T KOG2005|consen 125 MTMSERG 131 (878)
T ss_pred eeecccc
Confidence 7555443
No 395
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=46.98 E-value=3.8e+02 Score=28.40 Aligned_cols=142 Identities=8% Similarity=0.102 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHH-------HCC--
Q 011316 300 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV-------SQG-- 370 (488)
Q Consensus 300 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-------~~~-- 370 (488)
+...+++.++..+....-.....+-...-+-.|...+....+.+...++..|+.++..........+. +..
T Consensus 207 k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~v 286 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKPV 286 (1102)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcch
Confidence 44556666666665431111111111223555556666666777777777777777655433333222 111
Q ss_pred -ChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 011316 371 -CIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448 (488)
Q Consensus 371 -~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l 448 (488)
-...+++.|... +......|+..+..+........- .-..+..+.+.|.-+.|.++....|+.. +...++.
T Consensus 287 eRF~piv~gl~~~e~~~l~vacmq~INal~t~p~dldf------RlhlR~E~mr~gL~~~l~~l~~i~n~~l-dvqlkvf 359 (1102)
T KOG1924|consen 287 ERFRPIVEGLDFLEKQQLQVACMQFINALVTSPSDLDF------RLHLRSEFMRDGLHKYLPDLTEINNDIL-DVQLKVF 359 (1102)
T ss_pred hhhhhHHHHHhccchHHHHHHHHHHHHHhcCCHHHhhH------HHHHHHHHHHHhHHHHHHHhhhhccHHH-HHHHHHH
Confidence 244556666654 455666666655555433222210 0114666778888899999877755543 3334443
No 396
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=46.87 E-value=96 Score=29.25 Aligned_cols=64 Identities=23% Similarity=0.393 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHhCC--CHHHHHHhhCC---CCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011316 90 LQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSS---PTDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 90 v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~lL~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
+|..|+.++..+.. .+.....++..+ ++..|+.+++. -...++..|+.+|..++.+.....+.+
T Consensus 238 iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 238 IRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 44444444444444 566777777776 99999999976 357899999999999998776554443
No 397
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=46.41 E-value=4.1e+02 Score=28.69 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=33.6
Q ss_pred hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 149 ~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+.+.+.+...++.++.++....++.++..|...|+.+.+.
T Consensus 181 ~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~ 221 (838)
T KOG2073|consen 181 DVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRL 221 (838)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhc
Confidence 34455667778999999998888899999999999988876
No 398
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=46.09 E-value=76 Score=25.71 Aligned_cols=48 Identities=27% Similarity=0.201 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc
Q 011316 90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 90 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~ 148 (488)
-+..|+..|+.+..+. -+..|+.+|.+++.++...|+.+|.+-.---+
T Consensus 79 s~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp -HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT--TTCC
T ss_pred CHHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHh
Confidence 3566677776666522 38999999999999999999999998654433
No 399
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=45.87 E-value=3.3e+02 Score=27.84 Aligned_cols=134 Identities=13% Similarity=0.024 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChh--hhhchHHHH
Q 011316 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPAL 205 (488)
Q Consensus 128 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~L 205 (488)
-++.+|-.|...|+--+..-|. .+....++.+.-..| .+.+..++.....++..++...|..... ....+-..+
T Consensus 287 v~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rI 362 (740)
T COG5537 287 VDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRI 362 (740)
T ss_pred hhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 4566777777777766655443 344444555555566 6778899999999999999988655522 335666677
Q ss_pred HHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 206 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
++++..+..-|+..++..+..+.... .++...+..+..++-+..|+-+......+.++|.
T Consensus 363 LE~~r~D~d~VRi~sik~l~~lr~lg------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 363 LEFLRTDSDCVRICSIKSLCYLRILG------VLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHhhccchhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 78877664448888888777664321 1222233444445555555544444444444444
No 400
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=45.60 E-value=13 Score=22.67 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=19.8
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHH
Q 011316 242 GVCPRLVELLRHPSPSVLIPALRTV 266 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L 266 (488)
.+...+...+.++++.+|..|+..+
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHC
Confidence 5567777888899999999988753
No 401
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=44.26 E-value=2.7e+02 Score=25.89 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=58.5
Q ss_pred hchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCch--hHHHHHHhCCHHHHHHhcCCCC---cchHhHHHHHHhHhhc
Q 011316 199 RPALPALERLIHSN--DDEVLTDACWALSYLSDGTND--KIQAVIEAGVCPRLVELLRHPS---PSVLIPALRTVGNIVT 271 (488)
Q Consensus 199 ~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~~L~~l~~ 271 (488)
.|.+..+++.+... +...+.....++-...++.+. ....+.+.|+++.++..+-++. ..+.......||.+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 67777788777643 667788888888888877655 2345777899999988876542 3588889999999999
Q ss_pred CCchh
Q 011316 272 GDDMQ 276 (488)
Q Consensus 272 ~~~~~ 276 (488)
.+...
T Consensus 174 ~n~~~ 178 (303)
T PF12463_consen 174 FNRDA 178 (303)
T ss_pred CCHHH
Confidence 87644
No 402
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.13 E-value=84 Score=33.68 Aligned_cols=94 Identities=16% Similarity=0.059 Sum_probs=69.2
Q ss_pred CChHHHHHHhcccchhhHHHHHHHHHHHHh---cCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCH
Q 011316 284 QALPCLLDLLTQNYKKSIKKEACWTISNIT---AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~---~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 360 (488)
.++..-..+|.++ +..+|..|+.++.-.. ...++..-.++ +...|.++..+..+++-+...|+.++.++...++.
T Consensus 803 kIl~r~~~~LS~e-~l~irvkaLdvl~~gl~~La~~~n~LlPlv-hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD 880 (1014)
T KOG4524|consen 803 KILGRGIHLLSHE-SLRIRVKALDVLSLGLPLLATYHNLLLPLV-HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD 880 (1014)
T ss_pred HHHHHHHHHhcch-hHHHHHHHHHHHHhccHHHhccchhHhHHH-HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence 4566777788888 8999999998887433 33334333333 35899999999999999999999999999988766
Q ss_pred HHHHHHHHCCChHHHHhhcC
Q 011316 361 EQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 361 ~~~~~l~~~~~~~~L~~ll~ 380 (488)
-....+.+ ++++.+-.++.
T Consensus 881 Fv~sR~l~-dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 881 FVASRFLE-DVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHH-HHHHHHHHHHH
Confidence 66666555 66776665543
No 403
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=43.75 E-value=3e+02 Score=26.41 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=40.2
Q ss_pred cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011316 256 PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG 315 (488)
Q Consensus 256 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~ 315 (488)
...++.|...+.+...+.++.... .+..-+++..+. +..+|..|+.-|=-+|.+
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~ed~-d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLCEDD-DVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhcccccc-chhhHHHHHhccchhccC
Confidence 345667778888888777766554 345567777777 889999999988888775
No 404
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=42.79 E-value=2.9e+02 Score=25.91 Aligned_cols=185 Identities=14% Similarity=0.142 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh-cC---CCCcchHhH-HHHHHhHhhc----CCchhhHHHhhCCC
Q 011316 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LR---HPSPSVLIP-ALRTVGNIVT----GDDMQTQCIINHQA 285 (488)
Q Consensus 215 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~---~~~~~v~~~-a~~~L~~l~~----~~~~~~~~~~~~~~ 285 (488)
.++...+..+.......++. +.+ ....++.++.. |. +..|..|.. ++.+++.++. ...+....+++ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~-~~v-~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDP-EEV-ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-H-HHH-HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccCCH-HHH-HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 34556666666655544433 223 33666666663 32 233444432 3334444333 22233333443 46
Q ss_pred hHHHHHHhcccc--hhhHHHHHHHHHHHHhcCCHHHHHHHH---HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC--
Q 011316 286 LPCLLDLLTQNY--KKSIKKEACWTISNITAGNVNQIQAII---EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG-- 358 (488)
Q Consensus 286 ~~~L~~lL~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~---~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-- 358 (488)
+...+.++..+. -|+.|..-...+..+........-.+- -..++..++..+++.+.++...++.++..+..+.
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 667777775532 478888877777777664222221110 0125677788888889999999999999887643
Q ss_pred -CHHHHHHHHHCCChHHHHhhcC---C-CCHHHHHHHHHHHHHHHHhhh
Q 011316 359 -SNEQIKFLVSQGCIKPLCDLLN---C-PDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 359 -~~~~~~~l~~~~~~~~L~~ll~---~-~~~~v~~~al~~L~~l~~~~~ 402 (488)
+++....+.+.-.++.|..++. + .+...-......|.+++..-+
T Consensus 199 ~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve 247 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVE 247 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHH
Confidence 3355566666555555554433 3 333333344467777775533
No 405
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=42.23 E-value=2.4e+02 Score=24.86 Aligned_cols=129 Identities=13% Similarity=0.106 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC---------C---------HHHHHHHHHHHhhhhCCCch
Q 011316 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP---------T---------DDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~---------~---------~~~~~~a~~~L~~l~~~~~~ 149 (488)
......++..+..+.. +++....+...++++.+...|..- + ..+...-...|+.++.....
T Consensus 78 ~~y~~vGc~L~~~Ll~-~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~G 156 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLS-SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNG 156 (226)
T ss_pred hHHHHHHHHHHHHHHc-CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhH
Confidence 4555667777778887 677777777888888888776432 1 12333445677888766554
Q ss_pred hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 150 ~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
.+.+.+.++...+..+....+.+.+... .+.++=.. .....=..+-+.|.+++..++..|...|+.+.
T Consensus 157 -l~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~-------~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 -LKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYS-------VDGHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred -HHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCC-------CccHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 5667777888888888744333333222 33333111 11122234557788889999999999888765
No 406
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.11 E-value=1e+02 Score=33.09 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=67.2
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhc---cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011316 198 TRPALPALERLIHSNDDEVLTDACWALSYLS---DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274 (488)
Q Consensus 198 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~---~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 274 (488)
...++.....+|.+++..+|..++.++..-. ...++..-..+. -..+.++..+...++-+...|+.++.+++....
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 3566677778888999999999999887533 222222222332 567889999999999999999999999998776
Q ss_pred hhhHHHhhCCChHHHHHHhcc
Q 011316 275 MQTQCIINHQALPCLLDLLTQ 295 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~lL~~ 295 (488)
+....-+-..++|.+-.++++
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 554433333455555544433
No 407
>PRK13867 type IV secretion system chaperone VirE1; Provisional
Probab=41.07 E-value=13 Score=23.85 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=17.6
Q ss_pred CCCCCCCCCc--cccCCCCCCCCCCCCc
Q 011316 461 LPPGDATQAG--FGFAGNGLPVPSGGFN 486 (488)
Q Consensus 461 ~~~~~~~~~~--~~~~~~~~~~~~~~~~ 486 (488)
-.++++||+. =.|.++| ||+||.
T Consensus 14 v~~~e~p~~~h~ee~s~~~---~~ngft 38 (65)
T PRK13867 14 VSPIEEPQEIHIEELSDNH---QPNGFT 38 (65)
T ss_pred cCCccchhhhhHHHhcccC---CCCCcc
Confidence 4567777775 4688999 999995
No 408
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.55 E-value=4.7e+02 Score=27.71 Aligned_cols=149 Identities=12% Similarity=0.139 Sum_probs=89.7
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc--HHHH-----------------------------HHcCCHHHH
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEV-----------------------------IQSGVVPRF 78 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~--~~~~-----------------------------~~~~~i~~L 78 (488)
..+..|+...++....-.+.++.+|..+.-+.--+. ...+ .-..+|+.|
T Consensus 230 k~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRKLk~f~qrp~~~l~~~~~~~k~Ll~WyfE~~LK~ly~rfievL 309 (988)
T KOG2038|consen 230 KSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRKLKYFSQRPLLELTNKRLRDKILLMWYFEHELKILYFRFIEVL 309 (988)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchhhHHHhhChhhhccccccccceehHHHHHHHHHHHHHHHHHHH
Confidence 566667777766666666666666666543220010 0000 001234444
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC
Q 011316 79 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG 158 (488)
Q Consensus 79 ~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 158 (488)
..+-.++- +.++.+++..+..+....|+.-.. ++..++.-|.+++..+...|...|.+|...+|..+..+
T Consensus 310 e~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv---- 379 (988)
T KOG2038|consen 310 EELSKDPL-EEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV---- 379 (988)
T ss_pred HHHccccH-HHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh----
Confidence 44545555 788888999888888766665443 46778888888888888889999999888888654443
Q ss_pred ChHHHHHHhc-ccccHhHHHHHHHHHHHhhcC
Q 011316 159 ALMPLLAQFN-EHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 159 ~i~~l~~~l~-~~~~~~v~~~a~~~L~~l~~~ 189 (488)
+..+.+++- .+.+.....+|+.+|..+.-.
T Consensus 380 -i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 380 -IDEIERLAFRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred -HHHHHHHHcccCccccceeehhhhhhhhHhc
Confidence 334444431 333444555666666655443
No 409
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.15 E-value=5.6e+02 Score=27.57 Aligned_cols=166 Identities=11% Similarity=0.033 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011316 175 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 254 (488)
Q Consensus 175 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~ 254 (488)
.+-.+...+.++-...|.. ......+-.|...+..++..++-..+++...--.+ .-....-..++..+.....+.
T Consensus 40 eqpeavvr~~RLFek~Pfp--ifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~h---ln~v~n~aE~lrri~~V~hsn 114 (970)
T KOG1988|consen 40 EQPEAVVRFPRLFEKYPFP--IFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKH---LNKVLNGAEFLRRIFYVDHSN 114 (970)
T ss_pred cchHHHHHHHHHHhhCCch--hhhhHHHHHHHHHhccCcHHHHHHHHHHHhhcccc---chhhhhhhhhhheeEEeecCC
Confidence 3344555556665554433 33444555677778888888888888877732211 111122224555555566778
Q ss_pred CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-HhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Q 011316 255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLV 333 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~ 333 (488)
|+.-|...+.+++.+..--++. +....++. -+.+. +.---+.|+.+..+++..+.+-.. ++...+-
T Consensus 115 Dp~aRAllL~ilg~~s~lipEf-------n~~hhlIr~sl~S~-helE~eaa~~Aaa~Faa~sk~FA~-----si~gkis 181 (970)
T KOG1988|consen 115 DPVARALLLRILGQLSALIPEF-------NQVHHLIRISLDSH-HELEVEAAEFAAACFAAQSKDFAC-----SICGKIS 181 (970)
T ss_pred CHHHHHHHHHHHHHhhhhcccc-------cchhHHHHHHhcCc-cchhhHHHHHHHhhhhhhhhhhHH-----HHHHHHH
Confidence 8888999999998887644332 33444444 44454 444456677788888774333221 2333334
Q ss_pred HHHhcC--ChhHHHHHHHHHHHhccCC
Q 011316 334 NLLLNA--EFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 334 ~ll~~~--~~~v~~~a~~aL~~l~~~~ 358 (488)
.++... ....+...+.++..|....
T Consensus 182 ~mIef~d~~~~mkL~li~Vfs~M~c~a 208 (970)
T KOG1988|consen 182 DMIEFLDLPVPMKLSLIPVFSHMHCHA 208 (970)
T ss_pred HHhhcccCCCCcchhHhHHHHHhcchh
Confidence 444443 4567888899999997643
No 410
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=37.09 E-value=2.3e+02 Score=26.06 Aligned_cols=131 Identities=15% Similarity=0.075 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChH
Q 011316 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM 161 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 161 (488)
.+.|..|+.+|.+=+. . ...+|.++.++.. .+-+.....+...+.+..+..-+-+-.+ ...++
T Consensus 212 ~~~r~aAl~sLr~dsG----l------hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~-hqlmP 280 (450)
T COG5095 212 EQTRDAALESLRNDSG----L------HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYL-HQLMP 280 (450)
T ss_pred HHHHHHHHHHhccCcc----H------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHH-HHHHH
Confidence 6667777666644332 1 1235666666654 3445555555555555544322111111 12344
Q ss_pred HHHHHhc-----cc----ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc-C-ChhHHHHHHHHHHHhcc
Q 011316 162 PLLAQFN-----EH----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-N-DDEVLTDACWALSYLSD 229 (488)
Q Consensus 162 ~l~~~l~-----~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-~-~~~v~~~al~~L~~l~~ 229 (488)
.++.++. .. +.-.++..|+..+...+...+..-......+...+.+.+-+ + .......|+..+..+..
T Consensus 281 SilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k 359 (450)
T COG5095 281 SILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK 359 (450)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence 4444431 11 12347778888887777665433333333444444443322 2 34455666666665543
No 411
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=37.05 E-value=2e+02 Score=22.25 Aligned_cols=66 Identities=23% Similarity=0.237 Sum_probs=43.9
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhh-cCCCChhH-HHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQL-QFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~~v-~~~a~~~L~~l~~ 103 (488)
..+|.+.+.|+ +..++.+..+.-.+..++++. ...+. ++..+++.+ +... +.. +..++.++..++.
T Consensus 6 ~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~--~L~~~-----~l~~l~~~i~~~~~-~~~~~~~~l~~L~~l~q 74 (121)
T PF12397_consen 6 RLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV--PLSDE-----VLNALMESILKNWT-QETVQRQALICLIVLCQ 74 (121)
T ss_pred HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc--CCcHH-----HHHHHHHHHHhccc-cchhHHHHHHHHHHHHH
Confidence 45788999999 788999999999999988764 22222 333333332 2322 222 4778888888885
No 412
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=36.83 E-value=8.2e+02 Score=29.40 Aligned_cols=59 Identities=15% Similarity=0.286 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCCchhhHHHHhC---CCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc
Q 011316 90 LQFEAAWALTNIASGTSENTRVVIDH---GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 90 v~~~a~~~L~~l~~~~~~~~~~~~~~---g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~ 148 (488)
.-..-++.+..++..++..|..+.+. ..++.|..++.. -...++...+.+|+.++..++
T Consensus 580 ~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~~~~~ 642 (1691)
T PF11894_consen 580 MLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALAAKSP 642 (1691)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCH
Confidence 34556678888999878888888765 368999999987 457899999999999963333
No 413
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=36.39 E-value=66 Score=24.82 Aligned_cols=39 Identities=13% Similarity=0.130 Sum_probs=31.6
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID 114 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 114 (488)
+++.|++-|.+++ +++...|+.+|...+... ...+.++.
T Consensus 9 ~i~lLv~QL~D~~-~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPS-PEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788999999999 899999999999999844 55555543
No 414
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=36.32 E-value=4.1e+02 Score=25.76 Aligned_cols=61 Identities=15% Similarity=0.203 Sum_probs=40.2
Q ss_pred cHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC
Q 011316 65 PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 127 (488)
Q Consensus 65 ~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~ 127 (488)
..+..++..++-.|+.++.+.+ |+.|...-.+|.++...-...|..+.. ++=..+.++...
T Consensus 169 vaK~yid~~FvlkLLdLFdSED-pRERe~LKT~LhrIygKfl~~r~firk-~iNNif~~FIyE 229 (457)
T KOG2085|consen 169 VAKKYIDQKFVLKLLDLFDSED-PREREFLKTILHRIYGKFLVHRPFIRK-SINNIFLRFIYE 229 (457)
T ss_pred HHHHHhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhhhhccc
Confidence 3566677788888888888888 888888777887777644555544432 333444555443
No 415
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=35.94 E-value=93 Score=26.92 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=40.0
Q ss_pred HHHHhCCCHHHHHHhhCC---CC---------------HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-
Q 011316 110 RVVIDHGAVPIFVRLLSS---PT---------------DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH- 170 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~---~~---------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~- 170 (488)
+.+.+.|++..++.+++. .. ..+...+...|..++.+++..+..+.+ .++.++..+...
T Consensus 37 ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~--~~~~l~~~~~~~~ 114 (207)
T PF01365_consen 37 KLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK--HLDFLISIFMQLQ 114 (207)
T ss_dssp HHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH--HHH-----HHCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHhHHHHHHHHhh
Confidence 334455666666666543 11 467788999999999988877766655 233222222111
Q ss_pred ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316 171 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 171 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
.... ..+..++..+..+++.-........+..++.++.... -...-+..|..++.
T Consensus 115 ~~~~--~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ll~~~g--r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 115 IGYG--LGALDVLTEIFRDNPELCESISEEHIEKFIELLRKHG--RQPRYLDFLSSLCV 169 (207)
T ss_dssp H-TT--HHHHHHHHHHHTT----------------------------------------
T ss_pred ccCC--chHHHHHHHHHHCcHHHHHHhhHHHHHHHHHHHHHcC--CChHHHHHHhhhcc
Confidence 1111 2345556666666533333333444666777766522 11223444444443
No 416
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=33.89 E-value=2.7e+02 Score=23.02 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=51.8
Q ss_pred cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011316 157 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 230 (488)
Q Consensus 157 ~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 230 (488)
.+.+...+..+.+..|..+....+.++.+..... .-.......++|.+..++.+..+.-...++..+..+...
T Consensus 27 ~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~-~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 27 RNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPE-KWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred cCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcC-cccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3445555665556678888777777776544432 334445578899999999999998888899888887654
No 417
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=33.74 E-value=5.4e+02 Score=26.41 Aligned_cols=105 Identities=10% Similarity=-0.053 Sum_probs=70.6
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH--HHHh
Q 011316 79 IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD--LVLS 156 (488)
Q Consensus 79 ~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~ 156 (488)
+.-..+-+ +.+|..+...++--...-|+ .+.+..++...-..|.+.+..+|.....++-.++...|.... .+.+
T Consensus 281 vsRy~Dv~-d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 281 VSRYIDVD-DVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred hhhccchh-HHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 33344555 77888888888777664444 344445677777788888999999999999999988775320 1111
Q ss_pred cCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 157 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 157 ~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..-..++..+..+.|. |+..+...+..+..-
T Consensus 357 -RFk~rILE~~r~D~d~-VRi~sik~l~~lr~l 387 (740)
T COG5537 357 -RFKDRILEFLRTDSDC-VRICSIKSLCYLRIL 387 (740)
T ss_pred -HHHHHHHHHHhhccch-hhHHHHHHHHHHHHh
Confidence 2344566666566666 888888877776543
No 418
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=33.62 E-value=1.6e+02 Score=25.52 Aligned_cols=97 Identities=10% Similarity=0.129 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc
Q 011316 300 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 379 (488)
Q Consensus 300 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll 379 (488)
.+-..+...|..++.++.++...+.+. ++.++..+.......-..+..++..+..+. ++....+.+ ..++.+++++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN-~~L~~~i~e-~~I~~~i~ll 151 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDN-PELCESISE-EHIEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCc-HHHHHHhhH-HHHHHHHHHH
Confidence 566788899999999888887777763 443344433321111234667777777653 455555544 3488888888
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhh
Q 011316 380 NCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 380 ~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
...... ..-+..|..++..+.
T Consensus 152 ~~~gr~--~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 152 RKHGRQ--PRYLDFLSSLCVCNG 172 (207)
T ss_dssp -----------------------
T ss_pred HHcCCC--hHHHHHHhhhcccCC
Confidence 763322 234566666665443
No 419
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=33.61 E-value=25 Score=14.57 Aligned_cols=6 Identities=33% Similarity=0.805 Sum_probs=3.5
Q ss_pred CCCcCC
Q 011316 483 GGFNFG 488 (488)
Q Consensus 483 ~~~~~~ 488 (488)
..|+||
T Consensus 4 ~~Y~FG 9 (11)
T PF05953_consen 4 PMYSFG 9 (11)
T ss_pred CccccC
Confidence 446665
No 420
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=33.28 E-value=2.3e+02 Score=21.88 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=43.7
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh-hCCCCHHH-HHHHHHHHhhhhCCC
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL-LSSPTDDV-REQAVWALGNVAGDS 147 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~~-~~~a~~~L~~l~~~~ 147 (488)
.+|.+.+.|+..+.++.+..+..+++.++...+=..+ ++..+++. +.+....- .+.++.++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~------~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDE------VLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHH------HHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 5788888999444489999999999999984332222 23444432 22322222 477888888888544
No 421
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.53 E-value=8.3e+02 Score=28.16 Aligned_cols=111 Identities=12% Similarity=0.186 Sum_probs=65.8
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011316 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 323 (488)
+..+++-|...++.++..|+..++.+....+.....-+-......+-+++.+. +..||.....++..+...-.......
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45566667777889999999999999875443222111111223344455566 89999999999998887533333333
Q ss_pred HHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 324 ~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
++. +++...-.-.+.+..|-..|...+.....
T Consensus 122 LK~-li~~wl~~~~d~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 122 LKS-LIPPWLGGQFDLDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred HHh-hhhhhhheecccchHHHHHHHHHHHhhcC
Confidence 332 33333322233355666666666666554
No 422
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=31.45 E-value=2.5e+02 Score=22.60 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=47.3
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011316 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193 (488)
Q Consensus 114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~ 193 (488)
...+-..+..+|.+++++++..|+.||...- .+.... .-+.|-.++ + +...+.... .+. +.......
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k--~~~l~p------Y~d~L~~Ll-d--d~~frdeL~-~f~-~~~~~~~I 81 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWK--DPYLTP------YKDNLENLL-D--DKTFRDELT-TFN-LSDESSVI 81 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cHHHHh------HHHHHHHHc-C--cchHHHHHH-hhc-ccCCcCCC
Confidence 3345677888999999999999999998752 221111 123445555 2 223333222 221 22222233
Q ss_pred ChhhhhchHHHHHHhhc
Q 011316 194 LFEQTRPALPALERLIH 210 (488)
Q Consensus 194 ~~~~~~~~~~~L~~ll~ 210 (488)
.......++|.++.+|.
T Consensus 82 ~~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 82 EEEHRPELMPVVLRILY 98 (141)
T ss_pred CHHHHhHHHHHHHHHHH
Confidence 34455778888887764
No 423
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=31.17 E-value=1.9e+02 Score=33.49 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=69.9
Q ss_pred ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011316 169 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
.+.++.++..+......+.... .......++..|+..+-+++..-...|+.+|..++...+...... ...+..++
T Consensus 445 ~S~e~~v~~FG~~~Y~~lF~~f---ds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~f--a~~l~giL 519 (1426)
T PF14631_consen 445 RSKEPSVREFGSHLYKYLFKEF---DSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPF--ATFLKGIL 519 (1426)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHT--HHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHhhc---cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHH
Confidence 5567777777777666665553 122345688888888877777667899999999997554332221 12333344
Q ss_pred HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH
Q 011316 249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303 (488)
Q Consensus 249 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~ 303 (488)
..+.+=+..-.+....+++.++........ -+...+.-.+-+.|.+. +...++
T Consensus 520 D~l~~Ls~~qiR~lf~il~~La~~~~~~~s-~i~del~ivIRKQLss~-~~~~K~ 572 (1426)
T PF14631_consen 520 DYLDNLSLQQIRKLFDILCTLAFSDSSSSS-SIQDELHIVIRKQLSSS-NPKYKR 572 (1426)
T ss_dssp GGGGG--HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-S-SHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHhhcCC-cHHHHH
Confidence 444443333445567778777764322111 22223444455566666 555554
No 424
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.42 E-value=66 Score=30.10 Aligned_cols=62 Identities=8% Similarity=0.068 Sum_probs=49.9
Q ss_pred HHHHHhHhhcCCchhhHHHhhCCChHHHHHH--hcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011316 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDL--LTQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 262 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l--L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
..+.++++|+..++....+.+.++++.++.- +++. +|-+++....++.++...+.++.+.+-
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~-nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDW-NPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCC-ChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 6778999999888888888888998888773 3455 889999999999999987776655443
No 425
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=27.84 E-value=3.6e+02 Score=22.53 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH
Q 011316 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 121 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 121 (488)
+.-++|..|..++..++... ....+ + ..+++.+..-|.+ + .+++..+...+.+++...|.....-++ .+++.+
T Consensus 39 DGLelRK~ayE~lytlLd~~-~~~~~-~--~~~~~~v~~GL~D-~-~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l 111 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTC-LSRID-I--SEFLDRVEAGLKD-E-HDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPL 111 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHST-CSSS--H--HHHHHHHHHTTSS---HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-HHhCC-H--HHHHHHHHhhcCC-c-HHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHH
Confidence 44689999999999987754 22222 1 1246667777777 5 799999999999999866655444332 567777
Q ss_pred HHhhCC------------CCHHHHHHHHHHHhhh
Q 011316 122 VRLLSS------------PTDDVREQAVWALGNV 143 (488)
Q Consensus 122 ~~lL~~------------~~~~~~~~a~~~L~~l 143 (488)
-..|.. ...+..+.+++++..+
T Consensus 112 ~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 112 RKTLSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp HHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 776643 1246667777777777
No 426
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=27.51 E-value=2.8e+02 Score=21.08 Aligned_cols=88 Identities=10% Similarity=0.099 Sum_probs=51.7
Q ss_pred ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011316 171 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 250 (488)
Q Consensus 171 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 250 (488)
+.+.+..-..|++.+... ...++..+.+.++...+.-+-.++..+-.++.+............+.+.+...
T Consensus 17 S~~~I~~lt~~a~~~~~~---------a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~ 87 (114)
T cd03562 17 SQPSIQTLTKLAIENRKH---------AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDA 87 (114)
T ss_pred cHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 445566666666666422 23566666677766666666777777777776654443444444445555555
Q ss_pred cCCCCcchHhHHHHHHh
Q 011316 251 LRHPSPSVLIPALRTVG 267 (488)
Q Consensus 251 L~~~~~~v~~~a~~~L~ 267 (488)
....++.++......+.
T Consensus 88 ~~~~~~~~r~kl~rl~~ 104 (114)
T cd03562 88 YEKVDEKTRKKLERLLN 104 (114)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 55566666655555443
No 427
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.16 E-value=95 Score=25.00 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=29.0
Q ss_pred HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 417 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 417 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+....+....+.+..++.+++++||..|.+++-.|-.
T Consensus 10 k~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 10 KSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 4445556667778899999999999999999977644
No 428
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=27.00 E-value=81 Score=29.14 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=42.9
Q ss_pred cCChHHHHHHHhcCChhHHHHHHHHHHHhccCC-------------CHHHHHHHHHCCChHHHHhhcC
Q 011316 326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG-------------SNEQIKFLVSQGCIKPLCDLLN 380 (488)
Q Consensus 326 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-------------~~~~~~~l~~~~~~~~L~~ll~ 380 (488)
...+..+++-+...+...|..|+.+|..++.+. -..+...+.+.|+++.|..+|.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 346677888888888889999999999998754 1234556778899999999885
No 429
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=26.92 E-value=2.8e+02 Score=20.96 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=44.1
Q ss_pred CChHHHHHHHhc----CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHh
Q 011316 327 GIIGPLVNLLLN----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 327 ~~l~~L~~ll~~----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~ 400 (488)
|++..+-+.+.+ .+..-|..++.++..+...+. ..... +.+.++.+|.+ ..++++..++++...++..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~-~~i~~-----~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGG-SHISS-----ARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhH-HHHHH-----HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 355555556655 366788899999999987442 22222 24444444442 2448889999998888766
Q ss_pred hh
Q 011316 401 GE 402 (488)
Q Consensus 401 ~~ 402 (488)
-+
T Consensus 85 L~ 86 (107)
T PF08064_consen 85 LD 86 (107)
T ss_pred CC
Confidence 44
No 430
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=26.71 E-value=2.1e+02 Score=21.75 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=44.1
Q ss_pred CCHHHHHHhhcCCC---ChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCC
Q 011316 73 GVVPRFIEFLSRDD---FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD 146 (488)
Q Consensus 73 ~~i~~L~~lL~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~~~~~a~~~L~~l~~~ 146 (488)
|.+..+-+.+.+.+ ...-|..+++++..+.+-...... .+.|.+..+|++ ..++++..|+.+...+...
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-----~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~ 84 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-----SALPQIMACLQSALEIPELRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence 45566666665544 345688888888887762221111 335666666665 6788999999888877643
No 431
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=25.99 E-value=1.2e+02 Score=29.95 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=51.5
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
...+-....+++++++..+..++++++.+....+..+-+..+-..++..+..+ .+++-+.+..++..+..
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 33444444567899999999999999997766554444555667788888887 78888888888776653
No 432
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=25.45 E-value=4.7e+02 Score=23.08 Aligned_cols=130 Identities=11% Similarity=0.112 Sum_probs=78.8
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc--c-----------hhh----HHHHHHHHHHHHhcCCHHH
Q 011316 257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--Y-----------KKS----IKKEACWTISNITAGNVNQ 319 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~--~-----------~~~----v~~~a~~~L~nl~~~~~~~ 319 (488)
.....+|..+..+... ++....+.+.++++.+.+.|..- . ... ....=...|+.++.. +..
T Consensus 79 ~y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~-~~G 156 (226)
T PF14666_consen 79 KYVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST-PNG 156 (226)
T ss_pred HHHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC-hhH
Confidence 3445567777777764 55555666777777777766432 0 111 222333456666554 666
Q ss_pred HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316 320 IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 320 ~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
.+.+-+.+++..+..+....+. -.-....+.++-... ....+. .|...|..++..+|..|...|..++.
T Consensus 157 l~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~-~~~~R~--------iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV-DGHPRI--------ILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC-ccHHHH--------HHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 7777788999999999888633 122223455553222 222222 33468888899999999998887753
No 433
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=25.40 E-value=2.8e+02 Score=20.34 Aligned_cols=57 Identities=16% Similarity=0.046 Sum_probs=40.6
Q ss_pred ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHh
Q 011316 171 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYL 227 (488)
Q Consensus 171 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l 227 (488)
++-.+|+.|+..|..++.............+...+.+.+.++ ......-|+..|..+
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 355789999999999998764444445567777777777755 345566777777766
No 434
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=24.97 E-value=2.7e+02 Score=23.56 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=51.7
Q ss_pred HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011316 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324 (488)
Q Consensus 245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 324 (488)
+.+.....++++-+++.+..++...... ..... .+++.+-.++.++ +..|+....|+|..++..+++....++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~-~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDE-EYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 6677788888888888888777766553 11111 2344455555666 889999999999999987676555544
Q ss_pred H
Q 011316 325 E 325 (488)
Q Consensus 325 ~ 325 (488)
+
T Consensus 181 ~ 181 (197)
T cd06561 181 E 181 (197)
T ss_pred H
Confidence 4
No 435
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=24.73 E-value=7.3e+02 Score=25.00 Aligned_cols=194 Identities=15% Similarity=0.178 Sum_probs=95.9
Q ss_pred hchHHHHHHhhc-cCChhHHHHHHHHHHHhc--cCCc--------hhHHHHHHhCCHHHHHHhc----CCCCc----chH
Q 011316 199 RPALPALERLIH-SNDDEVLTDACWALSYLS--DGTN--------DKIQAVIEAGVCPRLVELL----RHPSP----SVL 259 (488)
Q Consensus 199 ~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~--~~~~--------~~~~~~~~~~~l~~L~~lL----~~~~~----~v~ 259 (488)
..++..+.+++. ++...++.++.+.|+.+- .-+. .....+-+..++...+.++ +.+.+ ...
T Consensus 96 nevir~ltqvis~sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 96 NEVIRTLTQVISFSGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHHHcCccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence 455666666665 457788899999998653 1111 1112222334444444444 22222 222
Q ss_pred hHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC
Q 011316 260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA 339 (488)
Q Consensus 260 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~ 339 (488)
..++..+........ .=..+.-..+-.+++-+..++++..+...-..=+.. ......++..=+.|.++.-+.
T Consensus 176 kvvl~~ia~vgeS~q-----yPPVNWaalLsPLMRlnfGeEvq~lCLeiAvtQaqS-SqsAa~fLg~WlsPpli~sLs-- 247 (589)
T PF11229_consen 176 KVVLKPIATVGESYQ-----YPPVNWAALLSPLMRLNFGEEVQQLCLEIAVTQAQS-SQSAAMFLGSWLSPPLIHSLS-- 247 (589)
T ss_pred HHHHHHhhhcCCCCC-----CCCccHHHHhhHHHhccccHHHHHHHHHHHHHhccc-cccHHHHHHhhcCcchhhhhh--
Confidence 333333332211100 001123333444444333566777766443322222 333445555555656554443
Q ss_pred ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 340 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 340 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
...+..-+..+......-..+..+.+.+.-.+..+...-.-.++++...++..|..-++..
T Consensus 248 -~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP 308 (589)
T PF11229_consen 248 -VNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLP 308 (589)
T ss_pred -HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCC
Confidence 3466666666666666666677666665444444433333456677777777777655443
No 436
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=24.64 E-value=4.2e+02 Score=22.16 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh
Q 011316 214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 293 (488)
Q Consensus 214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL 293 (488)
-++|..|..++..+......... +. .++..+..-|.+ +.+++..+...+..++...+.....-++ .+.+.+-..|
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~-~~--~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L 115 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRID-IS--EFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTL 115 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS--HH--HHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-HH--HHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHh
Confidence 57899999999988755443333 22 346777777877 8899999999999999877765444333 5667777766
Q ss_pred c
Q 011316 294 T 294 (488)
Q Consensus 294 ~ 294 (488)
+
T Consensus 116 ~ 116 (169)
T PF08623_consen 116 S 116 (169)
T ss_dssp H
T ss_pred h
Confidence 4
No 437
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.02 E-value=7.3e+02 Score=24.73 Aligned_cols=98 Identities=16% Similarity=0.273 Sum_probs=63.9
Q ss_pred HHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccc
Q 011316 335 LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVN 414 (488)
Q Consensus 335 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~ 414 (488)
+..++.+++--.-+.+|..++.+.+.+ ... ....|+..+.+...+++..++.++..++.....
T Consensus 15 lT~sg~~~~~p~~~k~lkkiv~~sdee-~~~-----~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~----------- 77 (661)
T KOG2374|consen 15 LTKSGAQEVDPRLLKALKKIVRYSDEE-VRL-----SSQTLMELMRHNHSQVRYLTLQIIDELFMRSKL----------- 77 (661)
T ss_pred HhhcCCcccChHHHHHHHHHHhccHHH-HHH-----HHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHH-----------
Confidence 334555555566677888888766544 222 478899999999999999999999999877653
Q ss_pred hHHHHHHhhccHHHHHHhh-cC-C----------CHHHHHHHHHHHHHhc
Q 011316 415 LFAQAIDDAEGLEKIENLQ-SH-D----------NTEIYEKAVKILETYW 452 (488)
Q Consensus 415 ~~~~~l~~~g~~~~l~~l~-~~-~----------~~~v~~~a~~~l~~~~ 452 (488)
|+..+.+. ++.+..|+ .. + -..++.+|...++.+-
T Consensus 78 -FR~lii~n--~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~e~Wn 124 (661)
T KOG2374|consen 78 -FRTLIIEN--LDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFLEKWN 124 (661)
T ss_pred -HHHHHHhC--HHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 34444333 33444442 11 1 1456788888887653
No 438
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=23.68 E-value=3.8e+02 Score=23.44 Aligned_cols=68 Identities=19% Similarity=0.157 Sum_probs=47.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCc-cHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSP-PINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
.+.+.|.+.++.+|..|++.|...++..... .-..+. .+.+-|.-.+=..+.|.+|+..+.-|+.+..
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~--kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~ 72 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDML--KLWKGLFYCMWMSDKPLVQEELAEELASLIH 72 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHH--HHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 5788999999999999999999998865322 122222 2444455555444447888888888877776
No 439
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=23.53 E-value=3.5e+02 Score=24.11 Aligned_cols=73 Identities=23% Similarity=0.212 Sum_probs=43.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316 378 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 378 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
+++++++.+...++.+..++...--..-. .+....+.|.. + .+.-+.+..+..+.++.++..+.+.+++....
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~-~~~~~~~~W~~-~--~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~ 73 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWIC-VNPSDEQLWES-M--NELKDRILSLWDSENPGVKLAAIKFLERVILV 73 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHH-H--HHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHH-H--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 46778899988888888777543211100 00000001111 1 12356677778888999999999999996553
No 440
>COG4291 Predicted membrane protein [Function unknown]
Probab=22.83 E-value=1.5e+02 Score=25.33 Aligned_cols=39 Identities=21% Similarity=0.515 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCcC
Q 011316 443 KAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487 (488)
Q Consensus 443 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (488)
.+...-..||....+ ||..--.+.+++|.++- .|+||+|
T Consensus 136 ~alHYAhlYw~~a~~---d~~~~~~~rg~~fp~~~---~P~g~DF 174 (228)
T COG4291 136 TALHYAHLYWRPAGD---DPGEKPIKRGLDFPETP---EPDGWDF 174 (228)
T ss_pred HHHHHHHHhhccccC---CCCCCcccCCCCCCCCC---CCCccch
Confidence 445555678885555 33333344468888888 8899987
No 441
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=22.54 E-value=1.8e+02 Score=26.82 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=39.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc-------------HHHHHHcCCHHHHHHhhc
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP-------------INEVIQSGVVPRFIEFLS 83 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~-------------~~~~~~~~~i~~L~~lL~ 83 (488)
.-+..+++.|.+.+...|..|+++|.-++.+.-.+. ...+.+.|+++.+..+|+
T Consensus 60 ~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 60 DFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 567889999999999999999999999988752111 233345566666666654
No 442
>PF15573 Imm27: Immunity protein 27
Probab=22.26 E-value=2.2e+02 Score=24.82 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=45.5
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHhhhhCCCchhHHH
Q 011316 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDL 153 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 153 (488)
=+.|++++++..++.+..-|.+.++.+|. +.+.|+ .+-+ ++|.+. ...+-..+..+...++
T Consensus 48 K~LLiqLMN~TkDE~vLNLCiRlFcSV~T-HdDL~~----~nNl----~FLs~asE~~v~TF~s~A~~tlS--------- 109 (259)
T PF15573_consen 48 KNLLIQLMNQTKDEAVLNLCIRLFCSVAT-HDDLRD----SNNL----RFLSSASEFGVFTFASGAITTLS--------- 109 (259)
T ss_pred hHHHHHHHhcchhHHHHHHHHHHHHhhcc-hHhhhc----ccce----ehHhhhhHHHHHHHHHHhhccch---------
Confidence 35788999887757788889999999998 443332 2212 233332 2333334444444443
Q ss_pred HHhcCChHHHHHHhcccc
Q 011316 154 VLSNGALMPLLAQFNEHA 171 (488)
Q Consensus 154 ~~~~~~i~~l~~~l~~~~ 171 (488)
..++|.|+.++..-.
T Consensus 110 ---yeVIPYLLaLleeWe 124 (259)
T PF15573_consen 110 ---YEVIPYLLALLEEWE 124 (259)
T ss_pred ---hhHHHHHHHHHHHHh
Confidence 247888998885433
No 443
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=22.09 E-value=7e+02 Score=23.81 Aligned_cols=130 Identities=12% Similarity=0.113 Sum_probs=79.0
Q ss_pred HHHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH-hcccc----hhhHHHHHHHHH
Q 011316 236 QAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNY----KKSIKKEACWTI 309 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~----~~~v~~~a~~~L 309 (488)
+.+.+.+++..+..+-... .+.++..++..+..+....... .+....+...+.++ ++... ...+..+-+..+
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 4456667888888876553 4678888888888887744322 22344566667666 43221 233555555555
Q ss_pred HHHhc---CCHHHHHHHHHc--------------------------CChHHHHHHHhcCChhHHHHHHHHHHHhccCC--
Q 011316 310 SNITA---GNVNQIQAIIEA--------------------------GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG-- 358 (488)
Q Consensus 310 ~nl~~---~~~~~~~~l~~~--------------------------~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-- 358 (488)
..++. .++.....+++. .++..|+.++++. -.+-..|..+|.-++.-.
T Consensus 81 ~~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~ 159 (353)
T PF10257_consen 81 NTLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASE 159 (353)
T ss_pred HHHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCC
Confidence 55543 456655555432 1367777777776 567777777777776655
Q ss_pred CHHHHHHHHH
Q 011316 359 SNEQIKFLVS 368 (488)
Q Consensus 359 ~~~~~~~l~~ 368 (488)
++....++.+
T Consensus 160 ~~~~~~~i~~ 169 (353)
T PF10257_consen 160 DPALAQYIVE 169 (353)
T ss_pred CcHHHHHHHH
Confidence 5555666666
No 444
>PRK09169 hypothetical protein; Validated
Probab=21.94 E-value=1.6e+03 Score=27.81 Aligned_cols=94 Identities=17% Similarity=0.143 Sum_probs=41.0
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCCCch
Q 011316 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
..+..+++.++. ++...-..++..|...+..+ ......+-. -.+..+++-|. -++++..+..+..+-..+.. .+.
T Consensus 163 ~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~-~~l~~al~~-q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~-~~~ 239 (2316)
T PRK09169 163 ISFALLLNALSKWPDNTDCQTAAEQLADRLASD-SRLLQAMDA-QEVANALNALSKWPDSPRCRNAAERLAERLAD-EPG 239 (2316)
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHhccC-HHHHHhcch-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhc-ChH
Confidence 445667777764 34344444555555555543 233333222 23334444443 34433444443333333443 444
Q ss_pred hhHHHHhCCCHHHHHHhhCC
Q 011316 108 NTRVVIDHGAVPIFVRLLSS 127 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~lL~~ 127 (488)
.+..+-..+ +..+++-|+.
T Consensus 240 l~~~l~~q~-va~~LNAlSK 258 (2316)
T PRK09169 240 LLQSLRAQE-VALLLNALSK 258 (2316)
T ss_pred HHHhcCHHH-HHHHHHHHhc
Confidence 443332222 4444444444
No 445
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=21.75 E-value=2.5e+02 Score=18.57 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=33.6
Q ss_pred HHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCc
Q 011316 98 LTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 98 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~ 148 (488)
|.-++. +...|+.+.+.|+-+.+-.+=. .+++.+++.+-.+..-|.++.+
T Consensus 2 LllL~~-T~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~ 52 (58)
T PF04064_consen 2 LLLLCA-TREGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEP 52 (58)
T ss_pred HhHHhc-cHHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCC
Confidence 344555 7788999988886655554433 3678888877777666665543
No 446
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain (IPR003104 from INTERPRO) is required to inhibit actin polymerisation. The FH3 domain is less well conserved and is required for directing formins to the correct intracellular location, such the mitotic spindle [], or the projection tip during conjugation []. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH3 domain.; GO: 0003779 actin binding, 0016043 cellular component organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=21.22 E-value=2.6e+02 Score=23.83 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=49.7
Q ss_pred CCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHH
Q 011316 369 QGCIKPLCDLLNC---PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445 (488)
Q Consensus 369 ~~~~~~L~~ll~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~ 445 (488)
.+=...++..+.. .+.+....++..+..++...+..... -..+..|...|..+.+..+....++.+..+..
T Consensus 20 ~~RF~~lv~~l~~~~~~~~e~~~~~l~~IN~li~~~~d~~~R------~~lr~e~~~~GL~~il~~l~~~~~~~L~~Qi~ 93 (197)
T PF06367_consen 20 RGRFQSLVGALESVDSSDIEYKTACLQFINSLINSPEDLNFR------VHLRNEFERLGLLDILEKLRNLEDDDLQEQID 93 (197)
T ss_dssp S-TTHHHHHHCS--TTS-HHHHHHHHHHHHHHHTT-SSHHHH------HHHHHHHHHTTHHHHHHHHTTS--HHHHHHHH
T ss_pred cccHHHHHHHHHccccCcHHHHHHHHHHHHHHHcCCCCHHHH------HHHHHHHHHCCcHHHHHHHHhcchHHHHHHHH
Confidence 3456777777774 45677778888888777665433211 11577788999999999999888888877655
Q ss_pred HHHHHh
Q 011316 446 KILETY 451 (488)
Q Consensus 446 ~~l~~~ 451 (488)
...+..
T Consensus 94 ~f~~~~ 99 (197)
T PF06367_consen 94 IFEENE 99 (197)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 447
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.07 E-value=7.9e+02 Score=24.04 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=23.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 373 KPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 373 ~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
..|..+|++.+++-.+.|-..+.++++-++
T Consensus 176 klL~rLLkSn~PeDLqaANkLIK~lVkeee 205 (594)
T KOG1086|consen 176 KLLARLLKSNHPEDLQAANKLIKTLVKEEE 205 (594)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888888886554
No 448
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=20.67 E-value=5.1e+02 Score=21.71 Aligned_cols=157 Identities=12% Similarity=0.129 Sum_probs=85.7
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHH
Q 011316 285 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 364 (488)
Q Consensus 285 ~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 364 (488)
+-+.++..|+.. .++......|+.+.+.-.... .....|..+-|.+++.+.+..-...|......|...-..+...
T Consensus 4 ikplLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~ 79 (174)
T PF04510_consen 4 IKPLLISCLTMQ---ETKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLI 79 (174)
T ss_pred hHHHHHHHHHhh---cccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHH
Confidence 345667777544 334445555555544211111 1135567777878777644344467888888887322445555
Q ss_pred HHHHCCChHHHHhhcCCCC-HHHHH--HHH-HHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCH-H
Q 011316 365 FLVSQGCIKPLCDLLNCPD-PRIVT--VCL-EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT-E 439 (488)
Q Consensus 365 ~l~~~~~~~~L~~ll~~~~-~~v~~--~al-~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~-~ 439 (488)
.+.+. +.+.+.+.|..+. .++.. .|+ .++...+..-+... ..+.+++.+.. .++.+.++.+...+ .
T Consensus 80 ~~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~------~~~~vk~L~~~--mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 80 PFMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSM------RVDLVKELLPK--MVKSVKELVERGMEVG 150 (174)
T ss_pred HHHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHH--HHHHHHHHHHcccHHH
Confidence 55553 6777777776653 22322 222 22222222222111 11223444433 47888888888888 7
Q ss_pred HHHHHHHHHHHhcCC
Q 011316 440 IYEKAVKILETYWVE 454 (488)
Q Consensus 440 v~~~a~~~l~~~~~~ 454 (488)
.-.+|..-+++++..
T Consensus 151 ~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 151 FLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 778888888877653
No 449
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.15 E-value=4.1e+02 Score=20.41 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=59.4
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 407 (488)
+++.|+.-+.+++++|...|..+|...+... .....+.... +.|..+ . ...--.+..++.....
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~--~~le~~v~~~--p~l~~L-~-------~~g~~Ll~~~lS~~~G---- 72 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK--EYLEYLVSLR--PSLDHL-G-------DIGSPLLLRFLSTPSG---- 72 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch--hhHHHHHHcC--cHHHHH-H-------HcCHHHHHHHHcchHH----
Confidence 4778888899999999999999999998754 4444444311 222111 1 1111223333333221
Q ss_pred CCCCccchHHHHHHhhccHH-HHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011316 408 GNTGGVNLFAQAIDDAEGLE-KIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
...+.+.|.++ -++......|.+-.......+..-+...
T Consensus 73 ---------f~~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~~~~~ 112 (115)
T PF14663_consen 73 ---------FRYLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEALTNH 112 (115)
T ss_pred ---------HHHhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcc
Confidence 22344444333 3455578888887777777776665543
Done!