Query 011316
Match_columns 488
No_of_seqs 343 out of 2479
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 05:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 1.7E-58 5.9E-63 460.8 46.6 446 31-487 58-510 (510)
2 3tpo_A Importin subunit alpha- 100.0 2.9E-57 9.9E-62 454.6 47.7 447 30-487 76-529 (529)
3 4b8j_A Importin subunit alpha- 100.0 5.3E-49 1.8E-53 396.2 49.3 443 30-473 74-516 (528)
4 1wa5_B Importin alpha subunit; 100.0 4.2E-46 1.4E-50 375.0 49.5 426 30-458 87-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 1.5E-44 5E-49 357.0 45.8 426 32-459 22-449 (450)
6 3ul1_B Importin subunit alpha- 100.0 4.1E-40 1.4E-44 328.2 31.9 377 16-401 91-480 (510)
7 3tpo_A Importin subunit alpha- 100.0 2E-39 6.9E-44 325.2 34.6 377 16-401 110-499 (529)
8 1jdh_A Beta-catenin; beta-cate 100.0 2.5E-36 8.5E-41 304.4 38.1 401 29-451 100-528 (529)
9 3now_A UNC-45 protein, SD10334 100.0 1.9E-37 6.4E-42 315.0 29.7 367 30-404 377-787 (810)
10 1xm9_A Plakophilin 1; armadill 100.0 5.8E-37 2E-41 300.8 30.4 365 74-456 3-452 (457)
11 3nmz_A APC variant protein; pr 100.0 8.8E-37 3E-41 294.2 28.7 371 25-402 27-453 (458)
12 2z6h_A Catenin beta-1, beta-ca 100.0 1.5E-35 5.3E-40 304.5 39.0 405 29-455 97-549 (644)
13 3now_A UNC-45 protein, SD10334 100.0 2.8E-36 9.6E-41 306.4 32.0 407 29-454 289-738 (810)
14 1wa5_B Importin alpha subunit; 100.0 6.5E-36 2.2E-40 300.7 32.9 369 30-402 130-513 (530)
15 4b8j_A Importin subunit alpha- 100.0 4.8E-36 1.7E-40 301.7 31.1 368 30-402 117-499 (528)
16 2jdq_A Importin alpha-1 subuni 100.0 8.2E-36 2.8E-40 294.3 29.9 367 30-401 64-445 (450)
17 1xm9_A Plakophilin 1; armadill 100.0 3.9E-36 1.3E-40 294.9 24.6 364 31-402 3-452 (457)
18 2z6g_A B-catenin; FULL-length, 100.0 8.1E-34 2.8E-38 295.9 43.0 400 29-450 233-660 (780)
19 3l6x_A Catenin delta-1; cateni 100.0 2.9E-35 9.8E-40 289.6 28.6 365 30-402 48-479 (584)
20 3l6x_A Catenin delta-1; cateni 100.0 1.3E-34 4.6E-39 284.8 30.7 367 71-454 46-477 (584)
21 3nmz_A APC variant protein; pr 100.0 7.3E-35 2.5E-39 280.8 24.5 338 12-358 56-452 (458)
22 1jdh_A Beta-catenin; beta-cate 100.0 1.1E-33 3.7E-38 285.1 30.4 403 30-453 59-489 (529)
23 2z6h_A Catenin beta-1, beta-ca 100.0 7.6E-33 2.6E-37 284.4 32.4 403 30-453 56-486 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 3.1E-32 1.1E-36 284.0 32.0 402 30-452 192-621 (780)
25 3nmw_A APC variant protein; AR 100.0 1.2E-29 4.2E-34 237.6 20.5 270 88-360 46-338 (354)
26 3nmw_A APC variant protein; AR 100.0 3.5E-29 1.2E-33 234.5 19.1 273 43-318 45-338 (354)
27 4hxt_A De novo protein OR329; 100.0 2.2E-26 7.7E-31 208.2 23.7 244 29-275 1-245 (252)
28 4hxt_A De novo protein OR329; 99.9 2E-26 7E-31 208.5 23.3 240 73-315 2-242 (252)
29 4db8_A Armadillo-repeat protei 99.9 2.7E-26 9.2E-31 207.7 20.7 239 30-271 12-251 (252)
30 4db8_A Armadillo-repeat protei 99.9 1.7E-26 5.9E-31 209.0 19.3 239 73-314 12-251 (252)
31 1xqr_A HSPBP1 protein; armadil 99.9 1.8E-24 6.2E-29 197.1 21.1 236 214-457 54-291 (296)
32 3opb_A SWI5-dependent HO expre 99.9 3.5E-23 1.2E-27 206.4 29.0 399 30-453 255-728 (778)
33 3opb_A SWI5-dependent HO expre 99.9 1.1E-23 3.9E-28 209.9 22.3 322 30-356 334-728 (778)
34 4db6_A Armadillo repeat protei 99.9 3.4E-22 1.2E-26 175.3 22.4 199 198-398 10-208 (210)
35 4db6_A Armadillo repeat protei 99.9 2.5E-22 8.7E-27 176.2 19.9 199 71-271 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 2.9E-21 1E-25 175.9 21.5 226 88-314 54-287 (296)
37 3tt9_A Plakophilin-2; cell adh 99.8 3.1E-20 1E-24 161.7 13.8 197 74-272 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 5.3E-20 1.8E-24 160.2 13.6 196 31-230 9-230 (233)
39 1b3u_A Protein (protein phosph 99.8 2.9E-18 9.8E-23 174.7 25.3 382 30-453 164-548 (588)
40 1b3u_A Protein (protein phosph 99.8 2.4E-18 8.3E-23 175.2 22.7 382 30-452 203-586 (588)
41 4fdd_A Transportin-1; heat rep 99.8 2.3E-18 7.9E-23 182.8 22.2 355 30-402 90-474 (852)
42 3grl_A General vesicular trans 99.8 5.8E-16 2E-20 150.7 34.1 429 12-458 47-555 (651)
43 4fdd_A Transportin-1; heat rep 99.8 9.3E-18 3.2E-22 178.2 22.3 387 40-454 58-472 (852)
44 2vgl_B AP-2 complex subunit be 99.8 1.6E-15 5.4E-20 153.7 33.8 341 30-402 49-422 (591)
45 2vgl_B AP-2 complex subunit be 99.7 8E-16 2.7E-20 155.8 22.8 301 31-356 87-419 (591)
46 1oyz_A Hypothetical protein YI 99.7 3E-15 1E-19 137.1 21.5 259 69-395 19-278 (280)
47 3grl_A General vesicular trans 99.7 1.4E-13 4.8E-18 134.1 34.0 373 27-402 119-553 (651)
48 1oyz_A Hypothetical protein YI 99.7 7.5E-15 2.6E-19 134.5 21.6 255 29-352 22-278 (280)
49 2bpt_A Importin beta-1 subunit 99.7 1.3E-14 4.6E-19 154.4 25.4 402 31-453 370-811 (861)
50 1w63_A Adapter-related protein 99.7 8.2E-15 2.8E-19 148.9 22.2 362 30-453 107-490 (618)
51 2bpt_A Importin beta-1 subunit 99.7 1.8E-14 6.1E-19 153.4 25.7 356 30-402 324-714 (861)
52 1qgr_A Protein (importin beta 99.6 3.6E-14 1.2E-18 151.4 24.4 399 30-452 172-678 (876)
53 1ibr_B P95, importin beta-1 su 99.6 1.1E-14 3.7E-19 143.6 18.7 391 32-455 3-439 (462)
54 1w63_A Adapter-related protein 99.6 7.6E-14 2.6E-18 141.8 23.3 383 30-469 142-597 (618)
55 1u6g_C TIP120 protein, CAND1; 99.6 1.2E-13 4.2E-18 152.3 25.8 407 31-454 7-464 (1230)
56 1qgr_A Protein (importin beta 99.6 8.9E-14 3E-18 148.4 23.3 407 31-453 367-827 (876)
57 1ibr_B P95, importin beta-1 su 99.6 1.7E-14 5.7E-19 142.2 14.2 360 31-402 36-440 (462)
58 1u6g_C TIP120 protein, CAND1; 99.6 1.8E-13 6E-18 151.1 22.1 399 30-452 86-547 (1230)
59 3ltm_A Alpha-REP4; protein eng 99.5 4.2E-12 1.4E-16 110.8 18.6 188 30-274 19-206 (211)
60 3ltj_A Alpharep-4; protein eng 99.4 6.3E-12 2.2E-16 108.7 18.4 184 30-270 14-197 (201)
61 3ltj_A Alpharep-4; protein eng 99.4 2E-11 6.9E-16 105.5 20.7 184 116-355 14-197 (201)
62 3ltm_A Alpha-REP4; protein eng 99.4 8.3E-12 2.8E-16 108.9 18.3 187 72-315 18-204 (211)
63 2vgl_A Adaptor protein complex 99.4 1.9E-11 6.5E-16 123.8 21.9 367 31-454 112-510 (621)
64 2vgl_A Adaptor protein complex 99.4 3E-10 1E-14 115.0 27.1 332 31-400 75-434 (621)
65 3tjz_B Coatomer subunit gamma; 99.1 5.5E-09 1.9E-13 96.5 19.8 279 30-353 68-350 (355)
66 2db0_A 253AA long hypothetical 99.1 1.1E-08 3.6E-13 82.0 18.4 218 114-357 30-247 (253)
67 4ady_A RPN2, 26S proteasome re 99.1 7.2E-09 2.5E-13 106.2 21.9 275 30-358 392-678 (963)
68 3b2a_A TON_1937, putative unch 99.0 1.5E-08 5.1E-13 84.9 17.3 226 199-451 32-259 (265)
69 4gmo_A Putative uncharacterize 99.0 5.2E-09 1.8E-13 107.3 16.6 220 69-313 31-257 (684)
70 2db0_A 253AA long hypothetical 98.9 1.5E-07 5E-12 75.5 17.9 220 199-458 31-251 (253)
71 3tjz_B Coatomer subunit gamma; 98.9 1.3E-08 4.4E-13 94.0 13.0 242 31-309 105-348 (355)
72 3b2a_A TON_1937, putative unch 98.9 1.3E-07 4.6E-12 79.2 17.2 190 28-231 31-220 (265)
73 4ady_A RPN2, 26S proteasome re 98.9 6.1E-07 2.1E-11 92.2 24.5 270 74-399 393-676 (963)
74 1ho8_A Vacuolar ATP synthase s 98.9 1E-06 3.4E-11 83.2 24.1 323 114-452 75-475 (480)
75 2qk2_A LP04448P; mini spindles 98.8 2.5E-08 8.5E-13 88.7 12.4 187 161-358 18-207 (242)
76 4gmo_A Putative uncharacterize 98.8 1.6E-08 5.6E-13 103.7 12.5 196 200-399 35-258 (684)
77 2qk2_A LP04448P; mini spindles 98.8 1.9E-08 6.5E-13 89.4 9.3 186 119-314 18-205 (242)
78 2qk1_A Protein STU2; STU2P, XM 98.7 1.3E-07 4.4E-12 84.0 13.0 189 78-271 21-220 (249)
79 2qk1_A Protein STU2; STU2P, XM 98.7 1.2E-07 4.1E-12 84.1 12.2 191 163-356 21-220 (249)
80 1wa5_C Importin alpha RE-expor 98.6 1.5E-05 5.1E-10 85.5 26.5 345 34-400 89-526 (960)
81 2x1g_F Cadmus; transport prote 98.5 4.9E-05 1.7E-09 81.8 28.8 396 42-453 256-722 (971)
82 1wa5_C Importin alpha RE-expor 98.5 1.6E-05 5.3E-10 85.4 24.6 389 30-455 35-527 (960)
83 2iw3_A Elongation factor 3A; a 98.5 1E-05 3.5E-10 84.3 22.0 304 30-355 14-323 (986)
84 1ho8_A Vacuolar ATP synthase s 98.5 5E-05 1.7E-09 71.8 24.7 322 30-356 77-476 (480)
85 1te4_A Conserved protein MTH18 98.5 3.3E-08 1.1E-12 78.5 2.8 121 72-227 11-131 (131)
86 1te4_A Conserved protein MTH18 98.5 3.8E-08 1.3E-12 78.2 1.6 120 241-396 11-130 (131)
87 2x1g_F Cadmus; transport prote 98.3 4E-05 1.4E-09 82.4 21.6 332 45-400 204-616 (971)
88 2iw3_A Elongation factor 3A; a 98.3 0.00011 3.6E-09 76.8 23.4 299 78-403 19-328 (986)
89 2x19_B Importin-13; nuclear tr 98.3 0.00028 9.7E-09 75.8 26.8 401 30-453 241-714 (963)
90 3dad_A FH1/FH2 domain-containi 98.2 3E-05 1E-09 69.6 14.3 187 202-389 120-326 (339)
91 4hat_C Exportin-1; heat repeat 98.2 0.0005 1.7E-08 73.3 26.0 338 41-402 206-621 (1023)
92 3m1i_C Exportin-1; heat repeat 98.2 0.0025 8.5E-08 69.0 32.0 314 75-402 196-572 (1049)
93 3dad_A FH1/FH2 domain-containi 98.2 3.5E-05 1.2E-09 69.2 14.0 188 247-443 123-326 (339)
94 2x19_B Importin-13; nuclear tr 98.1 0.00053 1.8E-08 73.6 24.0 344 83-455 459-848 (963)
95 4hat_C Exportin-1; heat repeat 98.0 0.0017 6E-08 69.2 25.9 315 74-403 195-573 (1023)
96 3m1i_C Exportin-1; heat repeat 98.0 0.0016 5.4E-08 70.5 26.0 341 41-401 206-620 (1049)
97 3ibv_A Exportin-T; karyopherin 97.9 0.00062 2.1E-08 72.5 19.6 417 6-454 214-731 (980)
98 3ibv_A Exportin-T; karyopherin 97.8 0.00011 3.8E-09 78.2 11.2 305 41-359 204-569 (980)
99 3oc3_A Helicase MOT1, MOT1; re 97.6 0.00075 2.6E-08 64.4 13.3 244 74-352 175-432 (800)
100 1upk_A MO25 protein; transfera 97.5 0.021 7E-07 51.3 20.2 243 199-454 77-333 (341)
101 3oc3_A Helicase MOT1, MOT1; re 97.5 0.00029 9.8E-09 67.2 8.7 244 31-309 175-431 (800)
102 4ffb_C Protein STU2; tubulin f 97.5 0.0022 7.5E-08 57.7 14.0 192 30-230 10-213 (278)
103 2of3_A ZYG-9; multifunctional 97.4 0.0027 9.3E-08 55.7 13.6 177 119-314 49-236 (266)
104 4ffb_C Protein STU2; tubulin f 97.4 0.0054 1.9E-07 55.1 16.0 189 247-454 14-213 (278)
105 3gjx_A Exportin-1; transport, 97.4 0.045 1.5E-06 58.4 24.6 314 76-404 209-600 (1073)
106 3gjx_A Exportin-1; transport, 97.3 0.015 5E-07 62.1 20.2 297 41-359 218-598 (1073)
107 2of3_A ZYG-9; multifunctional 97.3 0.001 3.4E-08 58.5 9.5 181 204-400 50-237 (266)
108 1upk_A MO25 protein; transfera 97.3 0.023 7.8E-07 51.0 18.1 202 236-449 72-279 (341)
109 2fv2_A RCD1 required for cell 97.1 0.026 9E-07 48.4 15.7 186 213-401 14-226 (268)
110 1lrv_A LRV, leucine-rich repea 97.0 0.00088 3E-08 58.5 5.5 90 206-351 152-241 (244)
111 1lrv_A LRV, leucine-rich repea 97.0 0.00041 1.4E-08 60.6 3.3 89 166-309 153-241 (244)
112 3c2g_A SYS-1 protein; beta-cat 96.7 0.2 6.8E-06 44.9 18.0 292 141-451 267-616 (619)
113 3u0r_A Apoptosis inhibitor 5; 96.6 0.058 2E-06 50.9 14.6 149 128-296 40-189 (507)
114 2fv2_A RCD1 required for cell 96.6 0.18 6E-06 43.3 16.3 194 255-453 14-224 (268)
115 3u0r_A Apoptosis inhibitor 5; 96.5 0.56 1.9E-05 44.3 23.0 291 85-404 40-363 (507)
116 2f31_A Diaphanous protein homo 96.4 0.023 8E-07 49.2 10.6 141 298-445 67-220 (233)
117 3l9t_A Putative uncharacterize 96.3 0.12 4E-06 44.1 13.9 145 74-240 72-218 (240)
118 3l9t_A Putative uncharacterize 96.2 0.072 2.5E-06 45.3 12.0 143 162-325 74-218 (240)
119 3a6p_A Exportin-5; exportin-5, 96.0 2.4 8.2E-05 46.4 25.9 299 32-357 13-381 (1204)
120 3eg5_B Protein diaphanous homo 95.7 0.056 1.9E-06 50.6 10.3 161 275-443 101-284 (383)
121 2f31_A Diaphanous protein homo 95.5 0.64 2.2E-05 40.1 15.7 139 50-190 21-182 (233)
122 3ebb_A Phospholipase A2-activa 95.4 0.65 2.2E-05 41.7 15.8 173 74-253 104-287 (304)
123 1lsh_A Lipovitellin (LV-1N, LV 95.3 1.9 6.3E-05 46.4 21.6 160 172-360 408-580 (1056)
124 3eg5_B Protein diaphanous homo 95.2 1 3.6E-05 42.0 17.0 156 33-190 69-248 (383)
125 3a6p_A Exportin-5; exportin-5, 95.2 0.92 3.2E-05 49.6 19.0 283 88-400 27-381 (1204)
126 3ebb_A Phospholipase A2-activa 95.2 0.17 5.9E-06 45.5 11.1 109 77-189 151-264 (304)
127 3c2g_A SYS-1 protein; beta-cat 95.0 0.39 1.3E-05 43.1 12.3 161 218-381 261-449 (619)
128 2bnx_A Diaphanous protein homo 94.7 0.37 1.3E-05 45.1 12.4 139 298-443 71-222 (386)
129 3o2t_A Symplekin; heat repeat, 94.5 3 0.0001 38.7 20.2 89 45-144 40-128 (386)
130 3gs3_A Symplekin, LD45768P; he 94.4 2.3 8E-05 37.0 20.1 101 32-143 17-117 (257)
131 1lsh_A Lipovitellin (LV-1N, LV 94.0 3 0.0001 44.9 19.0 166 118-316 393-578 (1056)
132 2bnx_A Diaphanous protein homo 93.6 4.1 0.00014 38.0 17.2 140 50-191 25-187 (386)
133 1x5b_A Signal transducing adap 93.1 0.14 4.9E-06 41.2 5.5 76 371-457 53-129 (163)
134 3qml_C Protein SLS1, nucleotid 92.4 0.93 3.2E-05 40.1 9.9 136 256-399 42-189 (315)
135 1vdy_A Hypothetical protein (R 92.0 0.48 1.6E-05 36.8 6.9 78 371-459 50-136 (140)
136 3fga_B Serine/threonine-protei 90.7 6 0.00021 36.7 14.1 259 86-357 97-367 (403)
137 3qml_C Protein SLS1, nucleotid 90.6 3.1 0.00011 36.8 11.3 148 200-355 22-188 (315)
138 2npp_B PP2A, B subunit, serine 88.4 15 0.0005 34.8 14.9 236 106-357 152-400 (449)
139 1mhq_A ADP-ribosylation factor 88.3 1.5 5.1E-05 34.5 7.1 75 371-456 39-119 (148)
140 3ldz_A STAM-1, signal transduc 88.1 1.3 4.6E-05 34.4 6.7 76 371-457 43-118 (140)
141 1juq_A ADP-ribosylation factor 87.8 2.2 7.6E-05 34.5 8.0 74 371-455 51-130 (171)
142 3ldz_A STAM-1, signal transduc 87.3 1.2 4.3E-05 34.6 6.0 72 328-399 43-114 (140)
143 3g2s_A C-terminal fragment of 87.0 2.6 8.9E-05 33.2 7.7 74 371-455 49-128 (149)
144 1x5b_A Signal transducing adap 87.0 0.88 3E-05 36.6 5.1 74 30-103 52-125 (163)
145 1mhq_A ADP-ribosylation factor 85.6 1.6 5.4E-05 34.4 5.8 71 328-398 39-115 (148)
146 3g2s_A C-terminal fragment of 84.1 1.6 5.6E-05 34.3 5.2 73 328-400 49-127 (149)
147 2npp_B PP2A, B subunit, serine 83.3 19 0.00065 34.0 12.9 228 30-276 162-404 (449)
148 3gs3_A Symplekin, LD45768P; he 82.5 23 0.0008 30.6 13.1 131 174-313 30-172 (257)
149 1juq_A ADP-ribosylation factor 81.5 1.9 6.4E-05 35.0 4.8 71 328-398 51-127 (171)
150 3zyq_A Hepatocyte growth facto 81.4 1.1 3.7E-05 38.3 3.5 74 30-103 45-118 (226)
151 1vsy_5 Proteasome activator BL 78.1 5.5 0.00019 42.2 8.3 221 160-400 135-366 (997)
152 3o2t_A Symplekin; heat repeat, 77.9 20 0.00067 33.2 10.9 118 327-453 63-183 (386)
153 3zyq_A Hepatocyte growth facto 77.0 7.7 0.00026 33.0 7.5 74 371-455 46-120 (226)
154 1dvp_A HRS, hepatocyte growth 76.7 1.8 6.1E-05 36.9 3.4 74 30-103 42-115 (220)
155 1dvp_A HRS, hepatocyte growth 76.6 8.3 0.00028 32.6 7.6 74 371-455 43-117 (220)
156 1elk_A Target of MYB1; superhe 75.6 7.9 0.00027 30.7 6.7 75 371-456 54-133 (157)
157 1vsy_5 Proteasome activator BL 71.5 13 0.00046 39.3 9.2 187 117-314 134-365 (997)
158 1elk_A Target of MYB1; superhe 65.7 9.3 0.00032 30.3 5.1 72 328-399 54-130 (157)
159 2jak_A Serine/threonine-protei 65.7 32 0.0011 31.8 9.2 191 197-394 171-362 (392)
160 1vdy_A Hypothetical protein (R 65.5 17 0.00057 28.1 6.2 71 328-400 50-131 (140)
161 2jak_A Serine/threonine-protei 61.7 1E+02 0.0035 28.5 13.6 126 84-211 140-269 (392)
162 3btp_B Protein VIRE1; TIM barr 61.6 2.7 9.3E-05 25.7 0.9 23 461-486 14-38 (63)
163 3fga_B Serine/threonine-protei 57.4 1.2E+02 0.0042 28.1 17.5 235 198-455 127-368 (403)
164 2xpp_A IWS1, ECU08_0440; trans 54.7 65 0.0022 25.0 7.9 77 361-453 52-136 (145)
165 3gae_A Protein DOA1; UFD3, CDC 54.5 52 0.0018 28.3 8.3 130 91-231 71-219 (253)
166 3rru_A TOM1L1 protein; structu 54.0 30 0.001 27.2 6.0 76 371-457 54-134 (152)
167 3ut4_A CTHE_2751, putative unc 53.5 28 0.00096 26.5 5.5 95 328-454 32-131 (134)
168 1vsy_4 Proteasome activator BL 52.5 2.1E+02 0.0073 29.4 15.3 111 118-229 341-455 (799)
169 3pst_A Protein DOA1; protein d 51.8 39 0.0013 31.6 7.3 130 91-231 243-391 (425)
170 3s4w_B Protein FACD2, fanconi 51.3 2.8E+02 0.0095 30.4 18.4 264 74-356 193-507 (1323)
171 3vld_A DNA mismatch repair pro 51.1 1.7E+02 0.0058 27.9 14.3 145 30-189 73-226 (500)
172 3l3f_X Protein DOA1, DOA1/UFD3 50.5 35 0.0012 31.2 6.7 130 91-231 180-328 (362)
173 2b6c_A Hypothetical protein EF 50.0 1.1E+02 0.0038 25.5 10.6 134 169-325 65-199 (220)
174 3pst_A Protein DOA1; protein d 45.3 29 0.001 32.4 5.4 131 217-357 243-390 (425)
175 3l3f_X Protein DOA1, DOA1/UFD3 44.5 25 0.00086 32.2 4.8 130 217-356 180-326 (362)
176 3gae_A Protein DOA1; UFD3, CDC 43.7 27 0.00093 30.2 4.8 99 87-189 103-218 (253)
177 1wjt_A Transcription elongatio 42.8 33 0.0011 24.8 4.3 38 417-454 47-85 (103)
178 3nfq_A Transcription factor IW 42.7 80 0.0027 25.2 6.8 76 363-454 69-152 (170)
179 1w9c_A CRM1 protein, exportin 39.5 2.1E+02 0.0071 25.6 15.3 181 257-454 44-246 (321)
180 3rru_A TOM1L1 protein; structu 36.9 43 0.0015 26.2 4.5 72 328-399 54-130 (152)
181 2b6c_A Hypothetical protein EF 34.3 2E+02 0.0069 23.9 11.7 141 76-240 58-199 (220)
182 3jxy_A Alkylpurine DNA glycosy 33.2 2.2E+02 0.0074 23.9 9.7 149 162-333 64-214 (232)
183 3vld_A DNA mismatch repair pro 31.6 3.5E+02 0.012 25.8 16.2 189 30-231 116-319 (500)
184 1w9c_A CRM1 protein, exportin 30.0 2.5E+02 0.0086 25.1 8.7 162 215-379 44-221 (321)
185 1sz9_A PCF11 protein; RNA poly 29.8 1.3E+02 0.0044 23.2 6.2 71 285-356 44-114 (144)
186 1t06_A Hypothetical protein; s 29.1 1.4E+02 0.0047 25.3 6.8 76 33-113 111-190 (235)
187 2xpp_A IWS1, ECU08_0440; trans 28.8 2E+02 0.0069 22.2 9.8 82 98-185 44-133 (145)
188 1vsy_4 Proteasome activator BL 27.8 3.7E+02 0.013 27.6 10.8 108 162-271 342-455 (799)
189 1f59_C NSP1P, FXFG nucleoporin 24.7 73 0.0025 15.7 2.9 19 470-488 9-27 (28)
190 3s4w_B Protein FACD2, fanconi 23.1 2.2E+02 0.0077 31.1 8.3 129 169-303 410-538 (1323)
191 1pqv_S STP-alpha, transcriptio 22.4 1.6E+02 0.0053 26.3 6.1 37 417-453 38-74 (309)
192 1sz9_A PCF11 protein; RNA poly 21.2 1.6E+02 0.0055 22.6 5.2 66 244-310 45-110 (144)
193 4atg_A TAF6; transcription, TF 20.2 3.6E+02 0.012 22.0 11.0 111 159-270 41-161 (196)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.7e-58 Score=460.77 Aligned_cols=446 Identities=48% Similarity=0.827 Sum_probs=388.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.++.+++.++|+|++.|+.|+..++++++.+++++++.+++.|++|.|+++|++++++.+|..|+|+|+|++.++++.+.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 48999999999999999999999999999988889999999999999999998776689999999999999998999999
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc----cHhHHHHHHHHHHHh
Q 011316 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNF 186 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~v~~~a~~~L~~l 186 (488)
.+++.|+++.|+.+|+++++++++.|+|+|+||+.+++.++..+.+.|++++++.++.... ...+++.++|++.++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995322 345788999999999
Q ss_pred hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011316 187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
+.+. +........+++|.|+.++.++++.++..++++|.+++....+..+.+.+.|+++.|+.+|.++++.++..++++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 9987 555666678999999999999999999999999999999888888888899999999999999999999999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011316 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 345 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 345 (488)
|++++.+++.....+++.|+++.|+.+|+++ +..+++.|+|+|+|++.++++.++.+.+.|+++.|+.++.+++.+++.
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence 9999999998889999999999999999999 899999999999999999899999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc
Q 011316 346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 425 (488)
Q Consensus 346 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 425 (488)
+|+|+|.|++..++.++..++.+.|+++.|+++|+.+|++++..++++|.+++..+++.. ..+.+...+++.||
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~gg 450 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGG 450 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc------chHHHHHHHHHcCc
Confidence 999999999998889999999999999999999999999999999999999998876532 34568899999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC--CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011316 426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP--LPPGDATQAGFGFAGNGLPVPSGGFNF 487 (488)
Q Consensus 426 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (488)
+++|+.|++++|++|+++|..+|++||++|+|+|+ .|++ ++.+|.|+.+. .|||+|||
T Consensus 451 l~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~ 510 (510)
T 3ul1_B 451 LDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPET--TSEGFAFQVQD--GAPGTFNF 510 (510)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHCC------------------------------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCC--CccccccCCCC--CCCCCCCC
Confidence 99999999999999999999999999998777666 4544 45679998653 38899998
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2.9e-57 Score=454.64 Aligned_cols=447 Identities=47% Similarity=0.815 Sum_probs=388.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++.+++.+.|+|++.++.|+..++++++.++++..+.+++.|++|.|+++|...+++.++..|+|+|++++.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999999999999999999988788899999999999999999877668999999999999999899999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc----cHhHHHHHHHHHHH
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSN 185 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~v~~~a~~~L~~ 185 (488)
..+++.|+++.|+.++.++++++++.|+|+|+||+.+++.++..+.+.|++++++.++.... ...+++.++|++++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995322 34578899999999
Q ss_pred hhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHH
Q 011316 186 FCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264 (488)
Q Consensus 186 l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~ 264 (488)
++.+. +........+++|.|+.++.++++.++..++++|.+++....+..+.+.+.|+++.|+.+|.++++.++..++.
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 99987 55566677899999999999999999999999999999988888888889999999999999999999999999
Q ss_pred HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
+|++++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++.....+++.|+++.|+.++.+++.+++
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 99999999998889999999999999999999 99999999999999999989999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhc
Q 011316 345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE 424 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 424 (488)
..|+|+|+|++..+++++..++.+.|+++.|+++|+.+|++++..++++|.+++..++... ..+.+...+++.|
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~g 468 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECG 468 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc------ChHHHHHHHHHCC
Confidence 9999999999998889999999999999999999999999999999999999998776432 3455888999999
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC--CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011316 425 GLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP--LPPGDATQAGFGFAGNGLPVPSGGFNF 487 (488)
Q Consensus 425 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (488)
|+++|+.|++|+|++|+++|..+|++||++|+|+|+ +|++ ++.+|.|+++. .+||||||
T Consensus 469 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~f~f 529 (529)
T 3tpo_A 469 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPET--TSEGFAFQVQD--GAPGTFNF 529 (529)
T ss_dssp CHHHHTGGGGCSSHHHHHHHHHHHHHHC-------------------------------------
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCC--CCcccccCCCC--CCCCCCCC
Confidence 999999999999999999999999999998766665 4544 45569998653 37899998
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=5.3e-49 Score=396.21 Aligned_cols=443 Identities=84% Similarity=1.294 Sum_probs=391.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+|.+++.|.++++.++..|++.|.++++....+....++..|++|.|+++|.+++++.++..|+++|++++.++++.+
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 56999999999999999999999999998877557788999999999999999987658999999999999999889999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+++.|+++.|+.+|.++++.+++.|+++|++++.+.+..+..+.+.|+++.|+.++..+.++.++..++|+|.+++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998888999999999999999997778899999999999999998
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
.+........++++.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+++
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 76777777899999999999999999999999999999988887778889999999999999999999999999999999
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011316 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 349 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 349 (488)
+.+++.....+++.++++.|+.+|.++.++.++..|+|+|+|++.++++....+++.|+++.|+.++.++++.++..|++
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 393 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW 393 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 99888888889999999999999987657899999999999999988888999999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHH
Q 011316 350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI 429 (488)
Q Consensus 350 aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 429 (488)
+|++++..++++...++.+.|+++.|+.++..++++++..++++|.+++...+....... ...+.+...+.+.|+++.+
T Consensus 394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l 472 (528)
T 4b8j_A 394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA-GDVNVFSQMIDEAEGLEKI 472 (528)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCCHHHHHHHHTTHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHCCcHHHH
Confidence 999999987789999999999999999999999999999999999999988765332111 1345689999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccc
Q 011316 430 ENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGF 473 (488)
Q Consensus 430 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (488)
..++++++++++++|..++++||+.++++|..+..+..+.+|.|
T Consensus 473 ~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~~~~~~~~~~~~ 516 (528)
T 4b8j_A 473 ENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATF 516 (528)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCCcccccccccCCCcccccee
Confidence 99999999999999999999999988776665555555554444
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.2e-46 Score=374.97 Aligned_cols=426 Identities=58% Similarity=0.894 Sum_probs=387.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.++.+++.|+++++.++..|++.|.++++..+.+....+++.|++|.|+++|.+++++.++..|+++|++++..+++.+
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 67999999999999999999999999998876456678889999999999999997338999999999999999888899
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+++.|+++.|+.+|.++++.+++.|+++|++++.+.+..+..+...|+++.++.++ .+.++.++..++|+|.+++.+
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999888899999999999999999 568899999999999999988
Q ss_pred C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 190 ~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
. +........++++.|+.++.++++.++..++++|.+++...+...+.+++.|+++.|+.++.++++.++..|+++|++
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 7 666677778999999999999999999999999999998877777888888999999999999999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA 348 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 348 (488)
++.+++...+.+++.++++.++.+|.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..|+
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 404 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9998888888888999999999999999 899999999999999998888888899999999999999999999999999
Q ss_pred HHHHHhccCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccH
Q 011316 349 WAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL 426 (488)
Q Consensus 349 ~aL~~l~~~~~~--~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 426 (488)
++|++++..+++ +....+.+.|+++.|+.++.+++++++..++++|.+++...+..... .....+.+...+.+.|++
T Consensus 405 ~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc-ccccccHHHHHHHHcCcH
Confidence 999999987666 77888999999999999999999999999999999999877653210 001235588999999999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 011316 427 EKIENLQSHDNTEIYEKAVKILETYWVEEDED 458 (488)
Q Consensus 427 ~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 458 (488)
+.|..++++++++++++|..++++||+.++++
T Consensus 484 ~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 484 EKIFNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 99999999999999999999999999987764
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.5e-44 Score=357.02 Aligned_cols=426 Identities=61% Similarity=0.959 Sum_probs=380.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHc-CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
++.+++.|+++++.++..|+..|.++++....+..+.+++. |+++.|+++|++++++.++..|+++|.+++..+++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78899999999999999999999998875435556777777 99999999999983399999999999999998888888
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
.+++.|+++.|+.+++++++.+++.|+++|++++.+.+..+..+.+.|+++.++.++..+.+..++..++++|.+++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 88899999999999999999999999999999999988888889999999999999954578999999999999999876
Q ss_pred -CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316 191 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 191 -~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
+........++++.++.+++++++.++..++++|.+++...++....+.+.++++.|+.++.++++.++..++++|+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 5555555689999999999999999999999999999988777777788889999999999999999999999999999
Q ss_pred hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011316 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW 349 (488)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~ 349 (488)
+.+.+...+.+++.++++.++.+++++ ++.+|..|+++|+|++.++++..+.+++.|+++.|+.++.+++++++..|++
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 998887777888889999999999998 8999999999999999988888888999999999999999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHH
Q 011316 350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI 429 (488)
Q Consensus 350 aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 429 (488)
+|++++..++++....+.+.|+++.|++++++++++++..++++|.+++...+..... +....+++...+.+.|+++.|
T Consensus 341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~l 419 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPYCALIEEAYGLDKI 419 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHHHHHHHHHHCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhHHHHHHHHcCcHHHH
Confidence 9999998767788888889999999999999999999999999999999876643221 011235689999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011316 430 ENLQSHDNTEIYEKAVKILETYWVEEDEDE 459 (488)
Q Consensus 430 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 459 (488)
..++++++.+++++|..++++||+.|+++|
T Consensus 420 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 420 EFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence 999999999999999999999998776644
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4.1e-40 Score=328.19 Aligned_cols=377 Identities=26% Similarity=0.407 Sum_probs=334.4
Q ss_pred CCCChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHH
Q 011316 16 KPMDPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA 94 (488)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a 94 (488)
.|++.+++. |++|.|+++|++ +++.+|..|+|+|.+++++. .+..+.+++.|++|.|+++|++++ +++++.|
T Consensus 91 ppi~~ii~~-----G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A 163 (510)
T 3ul1_B 91 PPIDNIIRA-----GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQA 163 (510)
T ss_dssp CCHHHHHHT-----THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHH
T ss_pred chHHHHHHC-----CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHH
Confidence 456777777 999999999975 66899999999999999875 678889999999999999999999 9999999
Q ss_pred HHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc
Q 011316 95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE 169 (488)
Q Consensus 95 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 169 (488)
+++|++++.++++.|..+.+.|+++.|+.++.+++ ..+.+.+++++.+++.+...........++++.|++++ .
T Consensus 164 ~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~ 242 (510)
T 3ul1_B 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-H 242 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-h
Confidence 99999999988999999999999999999998743 45788999999999987655555555567889999999 7
Q ss_pred cccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011316 170 HAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 170 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
+.+++++..++|+|.+++..... .......++++.|+.++.+++..++..++++|++++..++.....+++.|+++.|+
T Consensus 243 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~ 322 (510)
T 3ul1_B 243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 322 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC
T ss_pred cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHH
Confidence 88999999999999999987632 23345578999999999999999999999999999999888888899999999999
Q ss_pred HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcC
Q 011316 249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAG 327 (488)
Q Consensus 249 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~ 327 (488)
.+|.++++.++..|+++|+|++.+++.....+.+.|+++.++.++.++ +..+|+.|+|+|+|++. ++.+.+..+++.|
T Consensus 323 ~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g 401 (510)
T 3ul1_B 323 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 401 (510)
T ss_dssp -CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999 99999999999999998 5788889999999
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccC-----CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSG-----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
+++.|+++|..++++++..++++|.|+... ........+.+.|+++.|..+..+++.++.+.|..+|.+.+..+
T Consensus 402 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999752 22344556678899999999999999999999999998887543
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=2e-39 Score=325.16 Aligned_cols=377 Identities=26% Similarity=0.405 Sum_probs=333.5
Q ss_pred CCCChhhHHHHhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHH
Q 011316 16 KPMDPMFFIIQLQLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA 94 (488)
Q Consensus 16 ~~~~~~~~~~~~~~~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a 94 (488)
.|++.++.. |.+|.|+++|. ++++.++..|+++|.+++++. .+....+++.|++|.|+.+|.+++ ++++..|
T Consensus 110 ~~i~~ii~~-----G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A 182 (529)
T 3tpo_A 110 PPIDNIIRA-----GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQA 182 (529)
T ss_dssp CCHHHHHHT-----THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHH
T ss_pred chHHHHHHC-----CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHH
Confidence 345566666 99999999997 466999999999999998875 677788999999999999999999 9999999
Q ss_pred HHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc
Q 011316 95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE 169 (488)
Q Consensus 95 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 169 (488)
+++|++++.++++.+..+.+.|+++.|+.++..++ ..+.+.++|++.+++.+...........++++.|+.++ .
T Consensus 183 ~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~ 261 (529)
T 3tpo_A 183 VWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-H 261 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-c
Confidence 99999999988999999999999999999998643 45788999999999987655555555567889999999 7
Q ss_pred cccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011316 170 HAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 170 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
+.++.++..++|+|.+++..... .......++++.|+.++.+++..++..++++|++++..++.....+++.|+++.|+
T Consensus 262 ~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~ 341 (529)
T 3tpo_A 262 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP 341 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHH
Confidence 88999999999999999987632 33345579999999999999999999999999999998888888899999999999
Q ss_pred HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcC
Q 011316 249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAG 327 (488)
Q Consensus 249 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~ 327 (488)
.+|.++++.++..|+++|++++.+++.....+++.|+++.++.++.++ +..++..|+|+|+|++. ++++.+..+++.|
T Consensus 342 ~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g 420 (529)
T 3tpo_A 342 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCG 420 (529)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc
Confidence 999999999999999999999999998999999999999999999999 99999999999999998 5788889999999
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccC-----CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSG-----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
+++.|+++|..+|++++..++++|.|+... ........+.+.|+++.|..+..+++.++.+.|..+|.+.+..+
T Consensus 421 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 421 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999999742 22344556778899999999999999999999999998887543
No 8
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.5e-36 Score=304.37 Aligned_cols=401 Identities=18% Similarity=0.221 Sum_probs=342.3
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.|++|.|++.|+++++.++..|+++|.+++... ......+.+.|++|.|+++|.+++ ++++..++.+|.+++..+++.
T Consensus 100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~ 177 (529)
T 1jdh_A 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 177 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 389999999999999999999999999998865 455777778999999999999988 899999999999999988999
Q ss_pred hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
+..+.+.|+++.|+.++++ .+...+..++.+|.+++.. +..+..+.+.|+++.++.++ .+.++.++..++|+|.+++
T Consensus 178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHh
Confidence 9999999999999999987 4566777889999999975 45688888999999999999 6668999999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHH
Q 011316 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRT 265 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~ 265 (488)
...+.. ....++++.++++++++++.++..++++|++++..+++....+.+.|+++.|+.++.+ .++.++..++++
T Consensus 256 ~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~ 333 (529)
T 1jdh_A 256 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333 (529)
T ss_dssp TTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence 876332 2346899999999999999999999999999998877777889999999999999975 347899999999
Q ss_pred HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011316 266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 342 (488)
Q Consensus 266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 342 (488)
|++++..++. .+..+.+.++++.++.+|+++.++.++..++|+++|++.+ ++....+.+.|+++.|+.++.+++++
T Consensus 334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~ 412 (529)
T 1jdh_A 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD 412 (529)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence 9999986543 3557778899999999999883469999999999999986 44457888999999999999988888
Q ss_pred HHHHHHHHHHH----------------------hccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 343 IKKEAAWAISN----------------------ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 343 v~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
+|..|+|++.| ++. .++.+..+.+.|+++.|+.++.+++++++..+.++|.++...
T Consensus 413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp HC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 88877766665 443 345667788999999999999999999999999999998643
Q ss_pred hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011316 401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 451 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 451 (488)
.+ ++..+.+.|+++.|..++++++++|++.|.+++.++
T Consensus 491 ~~-------------~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HH-------------HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 22 578899999999999999999999999999999876
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-37 Score=315.01 Aligned_cols=367 Identities=15% Similarity=0.141 Sum_probs=316.7
Q ss_pred ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316 30 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 106 (488)
Q Consensus 30 ~~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~ 106 (488)
+.++.++++|.++ +++++..|++.|..+... .+....++ +.|++|.|+++|++++ +.++..|+++|+|++.+++
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence 4467788888887 899999999999997543 34455555 5799999999999988 8999999999999998542
Q ss_pred h-----------------------------hh---HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011316 107 E-----------------------------NT---RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 107 ~-----------------------------~~---~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
+ .+ +.+++.|+++.|+.+++++++.+++.|+|+|+|++.+ +.++..+
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~V 532 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKV 532 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 1 12 6788999999999999999999999999999999975 5589999
Q ss_pred HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccC
Q 011316 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDG 230 (488)
Q Consensus 155 ~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~ 230 (488)
.+.|++++|+.++ .+.++..++.|+|+|.+++.+...... ....+++|.|+.+|.++ +...+..++++|.|++..
T Consensus 533 v~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~ 611 (810)
T 3now_A 533 VQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611 (810)
T ss_dssp HHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence 9999999999999 677788999999999999876421111 12356899999999865 334467899999999998
Q ss_pred CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHHHHHHhcccchhhHHHHHHHHH
Q 011316 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
+++..+.+++.|+++.|+.++.++++.++..|+++|+|++.+.+ ....+.+ .+.++.|+.+++++ +..+|..|+|+|
T Consensus 612 ~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~AL 689 (810)
T 3now_A 612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE-DEETATACAGAL 689 (810)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 87777889999999999999999999999999999999999655 4445554 78999999999998 999999999999
Q ss_pred HHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC---CHH
Q 011316 310 SNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP---DPR 385 (488)
Q Consensus 310 ~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~---~~~ 385 (488)
+|++.+++..++.+++ .|+++.|+.++.+++.+++..|+|+|.|++.. +.+....+.+.|+++.|.++++.+ +.+
T Consensus 690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~ 768 (810)
T 3now_A 690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAK 768 (810)
T ss_dssp HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHH
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHH
Confidence 9999977888999998 89999999999999999999999999999984 578899999999999999999765 689
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 011316 386 IVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~~~ 404 (488)
+++.++++|.+++..+.-.
T Consensus 769 i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 769 AREVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhCCCcc
Confidence 9999999999999887643
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=5.8e-37 Score=300.79 Aligned_cols=365 Identities=18% Similarity=0.209 Sum_probs=308.7
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 153 (488)
.+|.|+++|++++ ++++..|+++|.+++..++..+..+.+.|+++.|+++|+++++.++..|+++|.||+.++++.+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999999998 899999999999999877888889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--------c--------CChhHH
Q 011316 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------NDDEVL 217 (488)
Q Consensus 154 ~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~--------~--------~~~~v~ 217 (488)
+.+.|+++.|+++|..+.++++++.++|+|.+++........... |++|.|+.++. + .+..+.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999995478899999999999999998544443445 99999999993 2 245677
Q ss_pred HHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcC------------------
Q 011316 218 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG------------------ 272 (488)
Q Consensus 218 ~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~------------------ 272 (488)
..++++|.|++.. ++..+.+.+. |+++.|+.++.+ .+..+.+.++.+|.+++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 7999999999987 6677778887 999999999975 4567888899999988732
Q ss_pred --------------------------------CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH--
Q 011316 273 --------------------------------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-- 318 (488)
Q Consensus 273 --------------------------------~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-- 318 (488)
.+...+.+++.++++.++.+|.+..++.++..|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1123344566778899999998776789999999999999985432
Q ss_pred -HH-HHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC------HHHHHH
Q 011316 319 -QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD------PRIVTV 389 (488)
Q Consensus 319 -~~-~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~------~~v~~~ 389 (488)
.. +..+ +.|++|.|++++.+++.+++..|+|+|.|++.+. + ...++..++++.|+++|..++ +++...
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--L-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--G-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--H-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 22 3444 6899999999999999999999999999998743 3 344556689999999999764 368889
Q ss_pred HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCC
Q 011316 390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWVEED 456 (488)
Q Consensus 390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~ 456 (488)
++++|.+++..+.. +...+.+.|+++.|.+++.++ ++++++.|.++|++||..++
T Consensus 397 ~l~~l~ni~~~~~~------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 397 ACYTVRNLMASQPQ------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHTTCTH------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHhcCHH------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999865442 477788999999999999999 99999999999999997654
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=8.8e-37 Score=294.17 Aligned_cols=371 Identities=18% Similarity=0.185 Sum_probs=295.7
Q ss_pred HHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-----------hhHHHH
Q 011316 25 IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-----------PQLQFE 93 (488)
Q Consensus 25 ~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-----------~~v~~~ 93 (488)
+..+++.++.++..+.+.++.. ..+.|..+.. + .+.+..+++.|++|.|+++|+..+. ++++..
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~---~~~~ll~~~~-~-~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (458)
T 3nmz_A 27 LGTKVEMVYSLLSMLGTHDKDD---MSRTLLAMSS-S-QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR 101 (458)
T ss_dssp ------------------CCHH---HHHHHHHHHS-S-TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred cCchHHHHHHHHHHhcCCCHHH---HHHHHHHHHc-C-CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence 3556678899999999887762 5566666443 2 4556888999999999999997542 699999
Q ss_pred HHHHHHHhcCCCchhhHHHHhCCCH----------HHHHHhhCCCC--HH-----HHH-------HHHHHHhhhhCCCch
Q 011316 94 AAWALTNIASGTSENTRVVIDHGAV----------PIFVRLLSSPT--DD-----VRE-------QAVWALGNVAGDSPK 149 (488)
Q Consensus 94 a~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~lL~~~~--~~-----~~~-------~a~~~L~~l~~~~~~ 149 (488)
|+|+|.||+.+.++......+.+++ +.+++++.+.. .+ +++ +|+|+|+|++.+ ++
T Consensus 102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e 180 (458)
T 3nmz_A 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EE 180 (458)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HH
Confidence 9999999999888888888787877 66777776632 22 444 999999999766 77
Q ss_pred hHHHHHhcCChHHHHHHhcc----------cccHhHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhccCChhHH
Q 011316 150 CRDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVL 217 (488)
Q Consensus 150 ~~~~~~~~~~i~~l~~~l~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~L~~ll~~~~~~v~ 217 (488)
+|+.+.+.|++++|+.++.. +.++.+++.|+|+|.+++.+.+...... ..|++|.|+.+|++++++++
T Consensus 181 ~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~ 260 (458)
T 3nmz_A 181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260 (458)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHH
Confidence 89999999999999999942 2457799999999999998864222222 46779999999999999999
Q ss_pred HHHHHHHHHhccC-CchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhc
Q 011316 218 TDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLT 294 (488)
Q Consensus 218 ~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~ 294 (488)
..++++|++++.. ++.....+.+.|+++.|+.+| .+.++.++..++.+|+||+.+++.....+. ..|+++.|+.+|.
T Consensus 261 ~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~ 340 (458)
T 3nmz_A 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT 340 (458)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc
Confidence 9999999999985 455667788999999999975 557789999999999999986655555565 7899999999998
Q ss_pred ccchh---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316 295 QNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS 368 (488)
Q Consensus 295 ~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 368 (488)
++.+. .++..|+|+|.|++. ++++.++.+.+.|+++.|+.+|.+++..++++|+++|.|++.. ++++...+.+
T Consensus 341 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~ 419 (458)
T 3nmz_A 341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWD 419 (458)
T ss_dssp CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence 77222 499999999999997 6789999999999999999999999999999999999999864 5788899999
Q ss_pred CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 369 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 369 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
.|+++.|+++++++++.+++.|+++|.+|+...+
T Consensus 420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999987643
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=304.47 Aligned_cols=405 Identities=19% Similarity=0.224 Sum_probs=347.3
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.+.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ ++++..++.+|.+++..+++.
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHH
Confidence 489999999999999999999999999998875 566777888999999999999998 899999999999999878999
Q ss_pred hHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 109 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
+..+.+.|+++.|+.++++. ...++..++.+|.+++.. +..+..+.+.|+++.++.++ .+.+..++..++++|.+++
T Consensus 175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999874 477889999999999965 45788899999999999999 6678999999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHH
Q 011316 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT 265 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~ 265 (488)
...+.. ....++++.|+.+++++++.++..++++|.+++..++...+.+.+.|+++.|+.++.+. .+.++..|+++
T Consensus 253 ~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 253 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp GGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 876332 33468999999999999999999999999999998777778889999999999999763 37899999999
Q ss_pred HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC--
Q 011316 266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-- 340 (488)
Q Consensus 266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~-- 340 (488)
|++++...+. ....+.+.++++.|+++|+++.++.+++.|+|+|+|++.+.. ....+.+.|+++.|++++.+++
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~ 409 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQD 409 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccchh
Confidence 9999975442 234467889999999999987447999999999999998644 4478889999999999998754
Q ss_pred --------------------hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 341 --------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 341 --------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
.+++..++.+|.+++.. ...+..+.+.|+++.|++++.+++++++..++++|.++...
T Consensus 410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp HTTC----------CCSSCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC--HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 34566677777777753 36667888999999999999999999999999999998753
Q ss_pred hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH--------------------HHHHHHHhcCCC
Q 011316 401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK--------------------AVKILETYWVEE 455 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~--------------------a~~~l~~~~~~~ 455 (488)
.+ ++..+.+.|+++.|..++++++++++.. +..++.+||..+
T Consensus 488 ~~-------------~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 488 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HH-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HH-------------HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 22 5788999999999999999999999553 455777777654
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.8e-36 Score=306.44 Aligned_cols=407 Identities=16% Similarity=0.145 Sum_probs=335.6
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-h
Q 011316 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-E 107 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-~ 107 (488)
-|.++.++.++.|+++.++..|++++.+++++ ...++.+++.|+ +.|+.++++++ +.+|..|+.+|++++.... +
T Consensus 289 ~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~d 364 (810)
T 3now_A 289 EGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQD 364 (810)
T ss_dssp TTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTTT
T ss_pred cchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhccccccC
Confidence 38999999999999999999999999996554 567787888775 99999999888 8999999999999985221 2
Q ss_pred hhHHHHhCCC----HHHHHHhhCCC--CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHH
Q 011316 108 NTRVVIDHGA----VPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 181 (488)
Q Consensus 108 ~~~~~~~~g~----i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~ 181 (488)
.....++.|. ++.++++|.++ ++++++.|+|+|++++.+.+.......+.|+++.|+.++ .+.++.++..+++
T Consensus 365 ~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~ 443 (810)
T 3now_A 365 AAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVVT 443 (810)
T ss_dssp TSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHHH
T ss_pred ccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHHH
Confidence 2222333343 56778888887 899999999999999987665444455679999999999 6788999999999
Q ss_pred HHHHhhcCCCCC---------------------------------ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316 182 TLSNFCRGKPQP---------------------------------LFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 182 ~L~~l~~~~~~~---------------------------------~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
+|.|++.+.+.. ......|++|.|+.+++++++.+++.++|+|+|++
T Consensus 444 ~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA 523 (810)
T 3now_A 444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC 523 (810)
T ss_dssp HHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 999999864211 22334689999999999999999999999999999
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHH--HhhCCChHHHHHHhcccchhhHHHHHH
Q 011316 229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC--IINHQALPCLLDLLTQNYKKSIKKEAC 306 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~~L~~lL~~~~~~~v~~~a~ 306 (488)
.. ++....+++.|+++.|+.+|.++++..+..|+++|++++.+.+..... ....++++.|+.+|.++.+...+..|+
T Consensus 524 ~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl 602 (810)
T 3now_A 524 GL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESL 602 (810)
T ss_dssp TS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHH
T ss_pred CC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHH
Confidence 65 457788999999999999999999999999999999998754322110 011358999999998652344567899
Q ss_pred HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH-CCChHHHHhhcCCCCHH
Q 011316 307 WTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPR 385 (488)
Q Consensus 307 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~~~~L~~ll~~~~~~ 385 (488)
++|.|++..+++.++.+++.|+++.|+.++.++++.++..|+++|+|++.+ ++....+.+ .|.++.|+.++.+++..
T Consensus 603 ~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~~ 680 (810)
T 3now_A 603 MALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDEE 680 (810)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCHH
Confidence 999999998888899999999999999999999999999999999999974 355566665 68999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
++..|+++|.++....+.. ....+...|+++.|..++.+++.+++..|.+++.++...
T Consensus 681 vq~~Aa~ALanLt~~s~~~-----------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~ 738 (810)
T 3now_A 681 TATACAGALAIITSVSVKC-----------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHHHHHHCHHH-----------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCHHH-----------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999998743322 134444389999999999999999999999999998764
No 14
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=6.5e-36 Score=300.71 Aligned_cols=369 Identities=25% Similarity=0.357 Sum_probs=327.9
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.+|.|++.|.++ ++.++..|+++|.+++... .+....++..|+++.|+++|.+++ +.++..|+++|++++..+++.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence 8999999999987 8999999999999988754 456777888999999999999988 999999999999999978899
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+...|+++.|+.++.+.++.++..++++|++++.+...........++++.|+.++ .+.++.++..++++|.+++.
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999977622234555678999999999 67789999999999999998
Q ss_pred CCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316 189 GKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 189 ~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
..+. .......++++.|+.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~ 366 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 366 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7522 223334689999999999999999999999999999888777788888999999999999999999999999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CH--HHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NV--NQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
+++.+++...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++.. .+ +....+++.|+++.|+.++.++++.++
T Consensus 367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99998888888888999999999999988 899999999999999983 45 778888999999999999999999999
Q ss_pred HHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 345 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
..++++|.+++..... .....+.+.|+++.|..++.+++++++..+..+|.+++...+
T Consensus 446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9999999999864422 245678889999999999999999999999999999886543
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=4.8e-36 Score=301.75 Aligned_cols=368 Identities=25% Similarity=0.360 Sum_probs=328.7
Q ss_pred ccHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.+|.|++.|.+++ +.++..|+++|.+++... .+....+++.|+++.|+++|.+++ +.++..|+++|++++...+..
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 99999999999876 999999999999998764 567788889999999999999988 999999999999999978889
Q ss_pred hHHHHhCCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 109 TRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
+..+.+.|+++.|+.++ .+.++.++..++|+|++++...+.. ......++++.|+.++ .+.++.++..++++|.+++
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~ 272 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS 272 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999 5688999999999999999876543 3344578999999999 7789999999999999999
Q ss_pred cCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHHH
Q 011316 188 RGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRT 265 (488)
Q Consensus 188 ~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~ 265 (488)
...+.. ......++++.++.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++ ++.++..|+++
T Consensus 273 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 273 DGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWT 352 (528)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHH
Confidence 775322 3344568999999999999999999999999999998888888889999999999999998 89999999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
|++++.+++.....+++.++++.|+.+|.++ +..++..|+++|+|++.. +++....+++.|+++.|+.++..+++.++
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 9999998888888888999999999999998 999999999999999984 78888999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 345 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
..++++|.+++..... .....+.+.|+++.+..+.++++++++..+..++.+++..++
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 9999999999864422 356777889999999999999999999999999999876543
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=8.2e-36 Score=294.34 Aligned_cols=367 Identities=25% Similarity=0.343 Sum_probs=324.2
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.+|.+++.|+++ ++.++..|+++|.+++... .+....+++.|+++.|+++|++++ +.+|..|+++|++++..+++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence 7899999999988 8999999999999998764 456677788999999999999988 999999999999999988889
Q ss_pred hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316 109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l 186 (488)
+..+.+.|+++.|+.++.+ .+..++..++++|++++.+. +....... .++++.++.++ .+.++.++..++|+|.++
T Consensus 142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 78999999999999999765 33222222 67899999999 677899999999999999
Q ss_pred hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011316 187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 187 ~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
+... +........++++.++.++.++++.++..++++|++++...+...+.+.+.|+++.++.++.++++.++..|+++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence 9865 222333446899999999999999999999999999999887777778888999999999999999999999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011316 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 344 (488)
|++++.+++...+.+++.++++.++.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence 9999998888888888899999999999998 899999999999999984 67888888899999999999999999999
Q ss_pred HHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 345 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 345 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
..|+++|.+++..+.. .....+.+.|+++.|..++.+++++++..+..+|.+++..+
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999875422 23466778899999999999999999999999999998543
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=3.9e-36 Score=294.93 Aligned_cols=364 Identities=16% Similarity=0.191 Sum_probs=303.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+|.+++.|+++++.++..|+++|.+++... ......+.+.|++|.|+++|++++ ++++..|+++|.+++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 5889999999999999999999999987543 445668889999999999999988 99999999999999997799999
Q ss_pred HHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------c-------ccHh
Q 011316 111 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLS 174 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~ 174 (488)
.+++.|+++.|+++|. ++++++++.++|+|+|++.+ +..+..+.+ |+++.|+.++.. . .++.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 78999999999999999988 567888888 999999999931 1 3567
Q ss_pred HHHHHHHHHHHhhcCCCCCChhhhh-chHHHHHHhhcc------CChhHHHHHHHHHHHhccCC----------------
Q 011316 175 MLRNATWTLSNFCRGKPQPLFEQTR-PALPALERLIHS------NDDEVLTDACWALSYLSDGT---------------- 231 (488)
Q Consensus 175 v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~L~~ll~~------~~~~v~~~al~~L~~l~~~~---------------- 231 (488)
+++.|+|+|.+++...+....+... |+++.|+.++++ .+..+++.++.+|.+++...
T Consensus 159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 8889999999999873323333334 999999999986 46678889999999886310
Q ss_pred ----------------------------------chhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchh
Q 011316 232 ----------------------------------NDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 232 ----------------------------------~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
+...+.+++.++++.++.+|.+ .++.+++.|+++|+|++.++...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 1122334455678888888865 46889999999999999876542
Q ss_pred h----HHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh------hHHH
Q 011316 277 T----QCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF------EIKK 345 (488)
Q Consensus 277 ~----~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------~v~~ 345 (488)
. +..+ +.++++.|+++|.++ +.++++.|+|+|+|++.+ ++ .+.++..++++.|+++|..+++ ++..
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 3333 689999999999999 999999999999999885 33 3455566899999999998743 6888
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhh
Q 011316 346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 346 ~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~ 402 (488)
.++++|.++.... ++....+.+.|+++.|.+++.++ +++++..|.++|.+++...+
T Consensus 396 ~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 396 SACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 9999999998754 57788888999999999999999 99999999999999885543
No 18
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=8.1e-34 Score=295.91 Aligned_cols=400 Identities=20% Similarity=0.223 Sum_probs=342.2
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.+.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|.+++ .+++..++.+|.+++..+++.
T Consensus 233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~ 310 (780)
T 2z6g_A 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES 310 (780)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHH
Confidence 389999999999999999999999999998765 466677778999999999999988 899999999999999878999
Q ss_pred hHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 109 TRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
+..+.+.|+++.|+.++++.+ ...+..++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..++..++++|.+++
T Consensus 311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~ 388 (780)
T 2z6g_A 311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS 388 (780)
T ss_dssp HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHh
Confidence 999999999999999998754 566778899999999754 4678888999999999999 6678899999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CC-cchHhHHHHH
Q 011316 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPALRT 265 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~-~~v~~~a~~~ 265 (488)
..... .....++++.|+.++++.++.++..++++|++++..++.....+.+.|+++.|+.+|.+ .+ +.++..|+++
T Consensus 389 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~a 466 (780)
T 2z6g_A 389 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 466 (780)
T ss_dssp TTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHH
Confidence 87633 22346899999999999999999999999999999887777888889999999999976 33 3899999999
Q ss_pred HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC--
Q 011316 266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-- 340 (488)
Q Consensus 266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~-- 340 (488)
|++++...++ ....+...++++.|+.+|.++..+.++..|+|+|+|++.+ +.....+.+.|+++.|++++.+++
T Consensus 467 L~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~ 545 (780)
T 2z6g_A 467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD 545 (780)
T ss_dssp HHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchh
Confidence 9999875543 2346678899999999999883459999999999999986 555678889999999999998754
Q ss_pred --------------------hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 341 --------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 341 --------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
.+++..++.+|.+++. ++.....+.+.|+++.|++++.++++.++..++.+|.++...
T Consensus 546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 3456678888888875 456777788999999999999999999999999999999743
Q ss_pred hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316 401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 450 (488)
.+ ++..+.+.|+++.|..++++++++|+..|...|.+
T Consensus 624 ~~-------------~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~ 660 (780)
T 2z6g_A 624 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 660 (780)
T ss_dssp HH-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HH-------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 22 58889999999999999999999997665444433
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.9e-35 Score=289.59 Aligned_cols=365 Identities=19% Similarity=0.208 Sum_probs=302.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC-Cchh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG-TSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~-~~~~ 108 (488)
+.+|.+++.|.++++.++..|+++|.+++... .+....+++.|+||.|+++|.+++ ++++..|+++|.+|+.. ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 78999999999999999999999999987654 677888999999999999999998 99999999999999985 6899
Q ss_pred hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-----------------cc
Q 011316 109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----------------EH 170 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------------~~ 170 (488)
+..+++.|+|+.|+.+|++ .+.++++.++++|++|+.+ +..+..+.+ ++++.|++++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 6889999999999999985 456777775 57999999872 12
Q ss_pred ccHhHHHHHHHHHHHhhcCCCC-CChhh-hhchHHHHHHhhcc------CChhHHHHHHHHHHHhccCCch---------
Q 011316 171 AKLSMLRNATWTLSNFCRGKPQ-PLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDGTND--------- 233 (488)
Q Consensus 171 ~~~~v~~~a~~~L~~l~~~~~~-~~~~~-~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~~~~~~--------- 233 (488)
.++.++.+|+++|.||+...+. ...+. ..|+++.|+.++++ .+...++.++++|.||+.....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3578999999999999987633 33333 36788899999874 4678999999999999865210
Q ss_pred ----------------hHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchh----hHHHhhCCChHHHHHH
Q 011316 234 ----------------KIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQ----TQCIINHQALPCLLDL 292 (488)
Q Consensus 234 ----------------~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~~L~~l 292 (488)
-.+.+.+.++++.++.+|. +.++.+++.|+++|.||+.+.... ...+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 0111223345677888885 467899999999999999865322 2234457889999999
Q ss_pred hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--------ChhHHHHHHHHHHHhccCCCHHHHH
Q 011316 293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--------EFEIKKEAAWAISNATSGGSNEQIK 364 (488)
Q Consensus 293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~ 364 (488)
|.++ +..++..|+|+|+|++.+.. .. ..+..|+++.|+++|.++ +.+++..|+++|.|++.. ++++.+
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~-~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR-NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh-HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9999 89999999999999998632 22 345778999999999886 357889999999999865 578899
Q ss_pred HHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhh
Q 011316 365 FLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 365 ~l~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~ 402 (488)
.+.+.|+++.|++++++. .+.+++.|.++|.+++...+
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 999999999999999986 78999999999999987655
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.3e-34 Score=284.84 Aligned_cols=367 Identities=18% Similarity=0.217 Sum_probs=304.0
Q ss_pred HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC-Cch
Q 011316 71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPK 149 (488)
Q Consensus 71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~ 149 (488)
..+.++.|+++|.+++ ++++..|+++|.+++..+++++..+++.|+|+.|+.+|+++++++++.|+++|.||+.+ +++
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4578999999999998 99999999999999988999999999999999999999999999999999999999985 578
Q ss_pred hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------------------c
Q 011316 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------------------S 211 (488)
Q Consensus 150 ~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~------------------~ 211 (488)
.+..+.+.|++++|+.+|....+..+++.++++|++|+.....+..+ ..++++.|++++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I-~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI-VDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHH-HHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHH-HhccHHHHHHHHhccccccccccccccccccc
Confidence 89999999999999999955568889999999999999865333333 3678999999872 2
Q ss_pred CChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcCCc----------
Q 011316 212 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDD---------- 274 (488)
Q Consensus 212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~---------- 274 (488)
.+..++..+.++|.|++..+++..+.+.+. |+++.|+.++.+ .+...++.|+++|.||+....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 357999999999999999887766777775 667899999864 456788999999999997521
Q ss_pred ---------------hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH---HHHH-HHHHcCChHHHHHH
Q 011316 275 ---------------MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---NQIQ-AIIEAGIIGPLVNL 335 (488)
Q Consensus 275 ---------------~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~-~l~~~~~l~~L~~l 335 (488)
.....+.+.++++.++.+|++..++.+++.|+++|.||+.+.. ...+ .+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 1122233445577889999755488999999999999988642 2223 34456789999999
Q ss_pred HhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--------CHHHHHHHHHHHHHHHHhhhhhhcc
Q 011316 336 LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--------DPRIVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 336 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--------~~~v~~~al~~L~~l~~~~~~~~~~ 407 (488)
|.+++..++..|+++|.|++.... ... .+..|+++.|+++|.++ ..+++..++++|.+++..+..
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~---- 436 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE---- 436 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence 999999999999999999998653 223 34679999999999976 357888999999999866553
Q ss_pred CCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011316 408 GNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE 454 (488)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~ 454 (488)
....+.+.|+++.|..++.+. ++++++.|..+|.++|..
T Consensus 437 --------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 437 --------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp --------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred --------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 266778999999999998775 899999999999999863
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=280.83 Aligned_cols=338 Identities=17% Similarity=0.175 Sum_probs=282.6
Q ss_pred hhcCCCC-ChhhHHHHhhhccHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCH---
Q 011316 12 FSLLKPM-DPMFFIIQLQLESLPAMVAGVWSD------------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVV--- 75 (488)
Q Consensus 12 ~~~~~~~-~~~~~~~~~~~~~i~~l~~~L~s~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i--- 75 (488)
++-..|+ ..+++. |.+|.|+++|+.. +++++.+|+|+|.+++++. ++..+...+.+++
T Consensus 56 ~~~~~~~~~~~~~~-----g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l 129 (458)
T 3nmz_A 56 MSSSQDSCISMRQS-----GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLL 129 (458)
T ss_dssp HHSSTTHHHHHHHH-----TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHC-----CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHH
Confidence 3333443 335666 9999999999963 3799999999999999987 6777777777777
Q ss_pred -------HHHHHhhcCCC-Chh-----HHH-------HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--------
Q 011316 76 -------PRFIEFLSRDD-FPQ-----LQF-------EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-------- 127 (488)
Q Consensus 76 -------~~L~~lL~~~~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-------- 127 (488)
+.+++++.+.. +.+ +++ +|+|+|.|++. ++++|+.+.+.|+++.|+.++..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~ 208 (458)
T 3nmz_A 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLT 208 (458)
T ss_dssp HHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTC
T ss_pred HHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccc
Confidence 67777777652 122 444 99999999987 69999999999999999999942
Q ss_pred ---CCHHHHHHHHHHHhhhhCCCchhHHHHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhch
Q 011316 128 ---PTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPA 201 (488)
Q Consensus 128 ---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~ 201 (488)
.++.+++.|+|+|.|++.+++..+..+.. .|+++.|+.+| .+.+++++..++|+|.+|+... .........|+
T Consensus 209 ~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga 287 (458)
T 3nmz_A 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 287 (458)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 34779999999999999988766666654 45699999999 7889999999999999999852 23344456799
Q ss_pred HHHHHHhh-ccCChhHHHHHHHHHHHhccCCchhHHHHH-HhCCHHHHHHhcCCCCc----chHhHHHHHHhHhhc---C
Q 011316 202 LPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---G 272 (488)
Q Consensus 202 ~~~L~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~ 272 (488)
++.|+++| ++.+..++..++.+|+|++...++....+. ..|+++.|+.+|.+.++ .++..|+++|.|++. .
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 99999975 567899999999999999984433334455 68999999999988654 389999999999996 6
Q ss_pred CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 011316 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 352 (488)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~ 352 (488)
+++.++.+.+.|+++.|+.+|.++ +..+++.|+|+|+|++.++++++..+.+.|+++.|+.++.+++..+++.|+++|.
T Consensus 368 ~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~ 446 (458)
T 3nmz_A 368 NEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446 (458)
T ss_dssp CHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 788888899999999999999998 8899999999999999888999999999999999999999999999999999999
Q ss_pred HhccCC
Q 011316 353 NATSGG 358 (488)
Q Consensus 353 ~l~~~~ 358 (488)
|++.+.
T Consensus 447 nL~~~~ 452 (458)
T 3nmz_A 447 NLMANR 452 (458)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 999865
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.1e-33 Score=285.05 Aligned_cols=403 Identities=16% Similarity=0.136 Sum_probs=339.4
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.++.+++.|.+ +++.++..|+.+|.++... .+....+.+.|+++.|+++|++++ +.++..|+++|.+++..+++.
T Consensus 59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 135 (529)
T 1jdh_A 59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 135 (529)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence 789999999975 5899999999999997553 457788889999999999999998 999999999999999976788
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+.+.|+++.|+.++.++++.++..++.+|.+++..+++.+..+.+.|+++.++.++....+...+..++.+|.+++.
T Consensus 136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999998888889999999999999999666667788889999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
...........++++.++.++.++++.++..++++|.+++...+... ...++++.|++++.++++.++..++++|++
T Consensus 216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN 292 (529)
T ss_dssp STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 65544555567999999999999999999999999999997654321 123789999999999999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCC-hhH
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAE-FEI 343 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~ll~~~~-~~v 343 (488)
++..++..+..+.+.++++.++.++.+.. ++.++..|+++|+|++.++++ .+..+.+.|+++.|++++.+++ +.+
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v 372 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence 99988888888899999999999998641 378999999999999885432 4567888999999999999886 599
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH----------------------HHHhh
Q 011316 344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN----------------------ILKAG 401 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~----------------------l~~~~ 401 (488)
+..++++|.|++... +....+.+.|+++.|++++.+++++++..+.+++.+ +....
T Consensus 373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~ 450 (529)
T 1jdh_A 373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 450 (529)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence 999999999999753 344778899999999999987777776655555444 33221
Q ss_pred hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+ .+..+.+.|+++.|..++.+++++++..|...+.++..
T Consensus 451 ~-------------~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 451 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp H-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred h-------------HHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence 1 35668889999999999999999999999999988764
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.6e-33 Score=284.43 Aligned_cols=403 Identities=16% Similarity=0.152 Sum_probs=345.2
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.++.+++.|.++ +++++..|+.+|.++... .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...+..
T Consensus 56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~ 132 (644)
T 2z6h_A 56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA 132 (644)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence 6799999999864 899999999999986553 357788888999999999999998 999999999999999866788
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+.+.|+++.|+.+++++++.++..++.+|.+++..+++.+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus 133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999987888888999999999999999666667888999999999998
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
...........++++.++.++.+.+..++..++++|.+++...... . ...++++.|+.++.+.++.++..++++|++
T Consensus 213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~--~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGSDDINVVTCAAGILSN 289 (644)
T ss_dssp CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-C--SCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-h--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7655555666789999999999999999999999999999764332 1 112789999999999999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHHHhcCCH---HHHHHHHHcCChHHHHHHHhcCC-hhH
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNV---NQIQAIIEAGIIGPLVNLLLNAE-FEI 343 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~---~~~~~l~~~~~l~~L~~ll~~~~-~~v 343 (488)
++..++..+..+.+.++++.|+.++.+..+ +.++..|+++|+|++..++ .....+.+.|+++.|+++|.+++ +.+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 999887888888899999999999987523 7999999999999997433 23344778899999999999874 699
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 011316 344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG 401 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~----------------------~~v~~~al~~L~~l~~~~ 401 (488)
++.|+++|.|++... +....+.+.|+++.|++++.+.+ .+++..++.+|.++....
T Consensus 370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~ 447 (644)
T 2z6h_A 370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV 447 (644)
T ss_dssp HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999999754 34478889999999999987633 456677888888776543
Q ss_pred hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
. .+..+.+.|+++.|..++.+.+++++..|...+.++..
T Consensus 448 ~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 448 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp H-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H-------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 2 36678889999999999999999999999999888764
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.1e-32 Score=284.04 Aligned_cols=402 Identities=16% Similarity=0.158 Sum_probs=342.2
Q ss_pred ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.++.|++.|.+ +++.++..|+.+|.++... .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...++.
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence 679999999985 4899999999999996654 355777888999999999999998 999999999999999977788
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+.+.|+++.|+.++.+++..++..++.+|.+++..+++.+..+.+.++++.|+.++........+..++.+|.+++.
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999999999988888888889999999999999665566677889999999997
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
...........++++.|+.++.+.+..++..++++|.+++...... ....++++.|+.++.+.++.++..|+++|++
T Consensus 349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6544455556789999999999999999999999999999765432 1123688999999999999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCCh-hH
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAEF-EI 343 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~ll~~~~~-~v 343 (488)
++..++..+..+.+.++++.|+.+|.+..+ ..++..|+++|+|++..+++ ....+.+.++++.|++++.+++. .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 999888888888899999999999987423 38999999999999874333 34567789999999999998864 99
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 011316 344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG 401 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~----------------------~~v~~~al~~L~~l~~~~ 401 (488)
+..|+++|+|++.. +.....+.+.|+++.|++++.+.+ ++++..++.+|.++....
T Consensus 506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~ 583 (780)
T 2z6g_A 506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI 583 (780)
T ss_dssp HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence 99999999999974 455578889999999999987543 356677888888876322
Q ss_pred hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316 402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
. .+..+.+.|+++.|..++.+++++++..|...+.++.
T Consensus 584 ~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 621 (780)
T 2z6g_A 584 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 621 (780)
T ss_dssp H-------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred h-------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1 3667888999999999999999999999999887765
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.2e-29 Score=237.60 Aligned_cols=270 Identities=19% Similarity=0.192 Sum_probs=234.7
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-----------CCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011316 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLS 156 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 156 (488)
...+..|+++|.+++. ++++|+.+++.|+++.|+.+|.. .++.+++.|+|+|.|++.+++..+..+..
T Consensus 46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566789999999999 68999999999999999999952 34789999999999999888766776654
Q ss_pred -cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc
Q 011316 157 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN 232 (488)
Q Consensus 157 -~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~al~~L~~l~~~~~ 232 (488)
.|+++.|+.+| ++.+++++..++|+|.+|+... .........|++|.|+++| ++.+..+++.++.+|.+++...+
T Consensus 125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 45699999999 7888999999999999999852 2334455679999999975 66789999999999999998554
Q ss_pred hhHHHHH-HhCCHHHHHHhcCCCCc----chHhHHHHHHhHhhc---CCchhhHHHhhCCChHHHHHHhcccchhhHHHH
Q 011316 233 DKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 304 (488)
Q Consensus 233 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~ 304 (488)
+....+. ..|+++.|+.+|.+.++ +++..|+++|.+++. .+++.++.+.+.|+++.|+.+|+++ +..+++.
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~ 282 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN 282 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence 4445565 67999999999987654 489999999999997 6788888899999999999999998 8999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCH
Q 011316 305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 360 (488)
|+|+|+|++.++++.++.+.+.|+++.|++++.+++..+++.|+++|.|++.+...
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999988899999999999999999999999999999999999999987543
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=3.5e-29 Score=234.54 Aligned_cols=273 Identities=18% Similarity=0.147 Sum_probs=236.5
Q ss_pred CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----------CCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011316 43 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----------DDFPQLQFEAAWALTNIASGTSENTRVV 112 (488)
Q Consensus 43 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 112 (488)
+...+..|+++|.++..+ .+.++.+++.|+++.|+.+|.. ..++.++..|+++|.+++.++++.+..+
T Consensus 45 ~~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345566899999997653 5789999999999999999952 1226799999999999999777788877
Q ss_pred HhC-CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC-CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316 113 IDH-GAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 113 ~~~-g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
... |+++.|+.+|+++++++++.|+++|.||+.. ++..+..+.+.|+++.|+++|.++.+..+++.++.+|++|+...
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 654 5699999999999999999999999999985 56678899999999999998756678899999999999999844
Q ss_pred -CCCChhh-hhchHHHHHHhhccCCh----hHHHHHHHHHHHhcc---CCchhHHHHHHhCCHHHHHHhcCCCCcchHhH
Q 011316 191 -PQPLFEQ-TRPALPALERLIHSNDD----EVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 261 (488)
Q Consensus 191 -~~~~~~~-~~~~~~~L~~ll~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~ 261 (488)
....... ..|+++.|+.+++++++ +++..++++|.|++. ..++..+.+.+.|+++.|+.+|.+++..++..
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 3333333 57999999999987654 599999999999996 56677788999999999999999999999999
Q ss_pred HHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011316 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318 (488)
Q Consensus 262 a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 318 (488)
|+++|+|++.++++.+..+.+.|+++.|+.+++++ +..+++.|+++|.|++.+++.
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHH
Confidence 99999999988888889999999999999999999 899999999999999986554
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2.2e-26 Score=208.24 Aligned_cols=244 Identities=27% Similarity=0.406 Sum_probs=223.9
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
++.++.+++.|+++++.++..|+++|.+++... .+....+++.|+++.|+++|++++ ++++..|+++|.+++..+++.
T Consensus 1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~ 78 (252)
T 4hxt_A 1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEA 78 (252)
T ss_dssp CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHH
Confidence 467999999999999999999999999988765 467888899999999999999998 999999999999999977999
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+..+.+.|+++.|+.+++++++.++..++++|++++...+..+..+.+.|+++.+++++ .+.++.++..++++|.+++.
T Consensus 79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999988888889999999999999999 77889999999999999998
Q ss_pred CCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316 189 GKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 189 ~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
..+.. ......++++.++.++.++++.++..++++|.+++..++...+.+.+.|+++.|+.++.++++.++..|+++|+
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 237 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE 237 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 75322 44555899999999999999999999999999999988888888999999999999999999999999999999
Q ss_pred HhhcCCch
Q 011316 268 NIVTGDDM 275 (488)
Q Consensus 268 ~l~~~~~~ 275 (488)
+++...+.
T Consensus 238 ~l~~~~~~ 245 (252)
T 4hxt_A 238 NIKSGGWL 245 (252)
T ss_dssp HHHHTCBC
T ss_pred HHHcCCCc
Confidence 99986543
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=2e-26 Score=208.51 Aligned_cols=240 Identities=28% Similarity=0.433 Sum_probs=222.6
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (488)
|.++.|+++|++++ ++++..|+++|.+++...++.+..+.+.|+++.|+.+++++++.++..++++|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57899999999999 99999999999999997888999999999999999999999999999999999999999888899
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
.+.+.|+++.++.++ ++.++.++..++++|.+++... .........++++.++++++++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6788999999999999999654 33444455789999999999999999999999999999988
Q ss_pred chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
+...+.+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.++.+++++ ++.++..|+++|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 77778889999999999999999999999999999999998888888889999999999999998 89999999999999
Q ss_pred HhcC
Q 011316 312 ITAG 315 (488)
Q Consensus 312 l~~~ 315 (488)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9974
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=2.7e-26 Score=207.74 Aligned_cols=239 Identities=37% Similarity=0.575 Sum_probs=217.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++.+++.|++++++++..|++.|.++++.. .+....+++.|+++.|+++|++++ +.++..|+++|.+++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 56788999999999999999999999988863 677888999999999999999999 9999999999999999889999
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+.+.|+++.|+.+++++++.+++.|+++|++++.+.+.....+.+.|+++.++.++ ++.++.++..++++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988776547888999999999999 777899999999999999986
Q ss_pred CC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 190 KP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 190 ~~-~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
.+ ........++++.++.++.++++.++..++++|++++..++.....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 52 22334457999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred hhc
Q 011316 269 IVT 271 (488)
Q Consensus 269 l~~ 271 (488)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.95 E-value=1.7e-26 Score=209.01 Aligned_cols=239 Identities=35% Similarity=0.556 Sum_probs=220.1
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD 152 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 152 (488)
..++.++++|++++ ++++..|+++|.++....++.+..+.+.|+++.|+.+|+++++.++..++++|++++.+++..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 56889999999999 89999999999887665778888999999999999999999999999999999999998888899
Q ss_pred HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316 153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 153 ~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
.+.+.|+++.++.++ +++++.++..++++|.+++...+.. ......++++.++.+++++++.++..++++|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6688999999999999999887544 55566899999999999999999999999999999988
Q ss_pred chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
+.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.++..|+++|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 77878888999999999999999999999999999999988888888889999999999999998 99999999999999
Q ss_pred Hhc
Q 011316 312 ITA 314 (488)
Q Consensus 312 l~~ 314 (488)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 974
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.93 E-value=1.8e-24 Score=197.13 Aligned_cols=236 Identities=16% Similarity=0.159 Sum_probs=197.3
Q ss_pred hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH-hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011316 214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL 292 (488)
Q Consensus 214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l 292 (488)
.+-+..|+..|.+++...+ ....+.+.|+++.++. +|.++++.++..|+++|++++..++..+..+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3567788999999988654 4566888899999999 9999999999999999999999999888999999999999999
Q ss_pred hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCCh
Q 011316 293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 372 (488)
Q Consensus 293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~ 372 (488)
|+++.+..++..|+|+|+|++.+++...+.+.+.|+++.|+.++.+++..++..|+|+|++++.. +++.+..+.+.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643788999999999999998888888899999999999999999999999999999999976 56788899999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 011316 373 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETY 451 (488)
Q Consensus 373 ~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~ 451 (488)
+.|+.+|.++++.++..++.+|.+++...+....... ...+.+...+++ .+..++.++ +.++++++..++++|
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~ 285 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTC 285 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999977443211000 011234555554 356666565 789999999999999
Q ss_pred cCCCCC
Q 011316 452 WVEEDE 457 (488)
Q Consensus 452 ~~~~~~ 457 (488)
|.++++
T Consensus 286 f~~~~~ 291 (296)
T 1xqr_A 286 FSSPAD 291 (296)
T ss_dssp CC----
T ss_pred cCCCCC
Confidence 976543
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.5e-23 Score=206.41 Aligned_cols=399 Identities=15% Similarity=0.140 Sum_probs=299.8
Q ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+..+.+.+.+.+. +..+...+++.|.. ++.+ +..+..+..+.++.|.+++++ +.+|..|+-+|+.+.......
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~a~L~lLsa-ACi~--~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~ 328 (778)
T 3opb_A 255 GLSKLFKKRVFEEQDLQFTKELLRLLSS-ACID--ETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLT 328 (778)
T ss_dssp THHHHHHHHHHSSCCHHHHHHHHHHHHH-HCCS--HHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCT
T ss_pred cHHHHHHHHHhcccchHHHHHHHHHHHH-HhCC--cHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCC
Confidence 5567777777654 44444445444444 6654 455666777889999999965 588999999999988733221
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
...+. ...+.+.+++.+++.+-++.|++.|+.++.+.. .++.+.+ .+++..|+.++....+.++...++.++.|++
T Consensus 329 ~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt 405 (778)
T 3opb_A 329 CINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS 405 (778)
T ss_dssp TCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT
T ss_pred cCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence 11111 246777778877776679999999999987655 5565554 4569999999954577889999999999999
Q ss_pred cCCCCC---------------------------------------ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316 188 RGKPQP---------------------------------------LFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 188 ~~~~~~---------------------------------------~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
...+.. ......|++|.|+.++.++++.++..++++|.+++
T Consensus 406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS 485 (778)
T 3opb_A 406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT 485 (778)
T ss_dssp CCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 865321 01123789999999999999999999999999999
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCCCcc---hHhHHHHHHhHhhcCCchhhHHHhh----CCChHHHHHHhcc-cchh-
Q 011316 229 DGTNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCIIN----HQALPCLLDLLTQ-NYKK- 299 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~----~~~~~~L~~lL~~-~~~~- 299 (488)
... ..+..+++.|+++.|+.++.+.... .+..|+.+|++++...+... ++. .++++.|+.+|.. +...
T Consensus 486 ~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~ 562 (778)
T 3opb_A 486 RSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDD 562 (778)
T ss_dssp TSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSS
T ss_pred CCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccc
Confidence 764 4557788999999999999886543 79999999999996443221 221 3889999999983 2111
Q ss_pred -----------hHHHHHHHHHHHHhcCC----HHHHHHHHHc-CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011316 300 -----------SIKKEACWTISNITAGN----VNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363 (488)
Q Consensus 300 -----------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 363 (488)
.-+.+|+.+|.|++..+ .+.++.++.. |+++.|..++.+++..+|+.|+++++|++... +.+
T Consensus 563 ~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i 640 (778)
T 3opb_A 563 NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LTI 640 (778)
T ss_dssp CC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGT
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHH
Confidence 22779999999999964 3456778884 89999999999999999999999999999743 332
Q ss_pred -HHHHHC------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-
Q 011316 364 -KFLVSQ------GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH- 435 (488)
Q Consensus 364 -~~l~~~------~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~- 435 (488)
..+... +.++.|+.+++.++.+++..|.++|.++....+.. ....+...++++.+..++.+
T Consensus 641 ~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-----------a~~ll~~~~gi~~Ll~lL~~~ 709 (778)
T 3opb_A 641 AAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-----------AKELLTKKELIENAIQVFADQ 709 (778)
T ss_dssp GGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-----------HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-----------HHHHHHccccHHHHHHHHhcc
Confidence 222211 23778999999999999999999999996544432 14445555899999999877
Q ss_pred -CCHHHHHHHHHHHHHhcC
Q 011316 436 -DNTEIYEKAVKILETYWV 453 (488)
Q Consensus 436 -~~~~v~~~a~~~l~~~~~ 453 (488)
++++++.++..++.++++
T Consensus 710 ~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 710 IDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 899999999999999997
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-23 Score=209.92 Aligned_cols=322 Identities=10% Similarity=0.108 Sum_probs=257.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCCCch
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
+..+.+.+.|.+++.+.+..|++.|..+.. . .+....+. +.++++.|++++++ .+ ..+.+.++.+|.|++...+.
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~-~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYLSL-K-ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-S-SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhC-C-HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcc
Confidence 456778888888777779999999999644 3 45555555 45679999999996 55 78999999999999973331
Q ss_pred --------------------------------------hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011316 108 --------------------------------------NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149 (488)
Q Consensus 108 --------------------------------------~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 149 (488)
++..+.+.|+++.|+.++.++++.+++.++++|.+++.+ +.
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~ 489 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN 489 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence 356678999999999999999999999999999999976 66
Q ss_pred hHHHHHhcCChHHHHHHhcccccH--hHHHHHHHHHHHhhcCCCCCChh---hhhchHHHHHHhhcc-CCh---------
Q 011316 150 CRDLVLSNGALMPLLAQFNEHAKL--SMLRNATWTLSNFCRGKPQPLFE---QTRPALPALERLIHS-NDD--------- 214 (488)
Q Consensus 150 ~~~~~~~~~~i~~l~~~l~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~---~~~~~~~~L~~ll~~-~~~--------- 214 (488)
.|..+.+.|++++|+.++...++. ..+..|+.+|.+++......... ...++++.|+.+|.. +..
T Consensus 490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~ 569 (778)
T 3opb_A 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569 (778)
T ss_dssp GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence 899999999999999999544333 28899999999998544111100 113899999999983 221
Q ss_pred ----hHHHHHHHHHHHhccCCc----hhHHHHHHh-CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC-
Q 011316 215 ----EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ- 284 (488)
Q Consensus 215 ----~v~~~al~~L~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~- 284 (488)
--+..|+.+|.|++..++ +....+++. |+++.|..++.++++.+++.|+++++|++.......+.+++.+
T Consensus 570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~ 649 (778)
T 3opb_A 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN 649 (778)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS
T ss_pred cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC
Confidence 127799999999998763 334667774 8999999999999999999999999999984432223444322
Q ss_pred -----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHhc--CChhHHHHHHHHHHHhcc
Q 011316 285 -----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLN--AEFEIKKEAAWAISNATS 356 (488)
Q Consensus 285 -----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~l~~L~~ll~~--~~~~v~~~a~~aL~~l~~ 356 (488)
.++.|+.++++. +.++|+.|+|+|+|++..++...+.+++. ++++.++.++++ ++++++..++.++.|++.
T Consensus 650 ~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred chhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 377899999888 99999999999999987778888888876 799999999999 899999999999999996
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=3.4e-22 Score=175.31 Aligned_cols=199 Identities=38% Similarity=0.586 Sum_probs=184.9
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh
Q 011316 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 277 (488)
Q Consensus 198 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 277 (488)
..+..+.+..+++++++.++..++++|.+++..+++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 35778899999999999999999999999998887888889999999999999999999999999999999998888888
Q ss_pred HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011316 278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 357 (488)
..+.+.|+++.++.+|+++ ++.++..|+++|+|++.++++....+.+.|+++.|++++.++++.++..|+++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8899999999999999999 999999999999999998888888999999999999999999999999999999999985
Q ss_pred CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011316 358 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 398 (488)
Q Consensus 358 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~ 398 (488)
+++....+.+.|+++.|.+++.+++++++..++++|.++.
T Consensus 169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4677888899999999999999999999999999999874
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=2.5e-22 Score=176.16 Aligned_cols=199 Identities=33% Similarity=0.522 Sum_probs=181.4
Q ss_pred HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011316 71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150 (488)
Q Consensus 71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 150 (488)
..+..+.|+.+|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+.+|+++++.++..|+++|++++.+++..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4578999999999999 999999999999999878999999999999999999999999999999999999999888888
Q ss_pred HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 151 ~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
+..+.+.|+++.++.++ ++.++.++..++++|.+++...+. .......++++.+++++++++..++..++++|.+++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 89999999999999999 777899999999999999986532 2334557899999999999999999999999999999
Q ss_pred CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
.++.....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 877777888899999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=2.9e-21 Score=175.93 Aligned_cols=226 Identities=17% Similarity=0.144 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011316 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 166 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~ 166 (488)
.+-+..|+..|..++. +.++...+.+.|+++.|+. +|.++++.++..|+|+|++++.+++.++..+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678899999999999 6778888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hcccccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011316 167 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 245 (488)
Q Consensus 167 l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 245 (488)
+..+.+..+++.|+|+|++++.+.+. .......++++.|+.++++++..++..++|+|.+++..+++..+.+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 95455789999999999999987633 33444578999999999999999999999999999988888889999999999
Q ss_pred HHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh--CCC---hHHHHHHhcccc-hhhHHHHHHHHHHHHhc
Q 011316 246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN--HQA---LPCLLDLLTQNY-KKSIKKEACWTISNITA 314 (488)
Q Consensus 246 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~---~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~ 314 (488)
.|+.+|.++++.++..++.+|++++...+......-. ..+ ++.-.+-+++.+ ..++...+..++.++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999875443332221 111 111233334221 34555666666666654
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=161.66 Aligned_cols=197 Identities=19% Similarity=0.152 Sum_probs=170.0
Q ss_pred CHHHHHHhhcCCCCh--hHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011316 74 VVPRFIEFLSRDDFP--QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (488)
.+|.++++|++++ + +++..|++++.+++..+++++..+.+.|+||.|+++|+++++++++.|+++|.||+.++++.+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999988 6 889999999999998789999999999999999999999999999999999999999888899
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------------cCChh
Q 011316 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------SNDDE 215 (488)
Q Consensus 152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~----------------~~~~~ 215 (488)
..+.+.|++++|+++|..+.+.++++.++.+|++|+.....+.. ...++++.|+.++. ..+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~-i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL-MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH-HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH-HHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999995467889999999999999987544333 33567888887653 12568
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcC
Q 011316 216 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG 272 (488)
Q Consensus 216 v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~ 272 (488)
++..+..+|.|++..+++..+.+.+. |+++.|+.+++. .+...++.++.+|.||++.
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776666777765 678999999864 3567889999999999874
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=5.3e-20 Score=160.15 Aligned_cols=196 Identities=18% Similarity=0.184 Sum_probs=166.2
Q ss_pred cHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 31 SLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 31 ~i~~l~~~L~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.+|.+++.|+++++ +++..|++.+.+++... .+....+++.|++|.|+++|.+++ +++|..|+++|.+++.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 68899999999888 89999999999977654 567888899999999999999988 999999999999999988999
Q ss_pred hHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---------------cccc
Q 011316 109 TRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---------------EHAK 172 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------------~~~~ 172 (488)
+..+.+.|+++.|+++|+ +++.++++.++.+|++|+.... .+..+.+ +++++|+.++. ...+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 5799999999999999997654 5666666 46888887652 0136
Q ss_pred HhHHHHHHHHHHHhhcCC-CCCChhh-hhchHHHHHHhhcc------CChhHHHHHHHHHHHhccC
Q 011316 173 LSMLRNATWTLSNFCRGK-PQPLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSDG 230 (488)
Q Consensus 173 ~~v~~~a~~~L~~l~~~~-~~~~~~~-~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~~~ 230 (488)
+.++.++..+|.+++... .....+. ..|+++.|+.+++. .+.+.++.++.+|.||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 789999999999999865 3344343 35789999999984 2678999999999999864
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.81 E-value=2.9e-18 Score=174.69 Aligned_cols=382 Identities=11% Similarity=0.120 Sum_probs=285.0
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+|.+.+.+.++++.+|..|+..|..++...+. ......++|.+..++++++ +.+|..|+.++..++...+..
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~- 237 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE- 237 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH-
Confidence 4567777788889999999999999998865421 1234578899999999988 899999999999988633221
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.....+++.+..++.++++.+|..++.+|+.++...+. .......++.++.++ +++++.++..+++++..++..
T Consensus 238 --~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHH
Confidence 12234688888899999999999999999999753211 122334677888888 778899999999999999886
Q ss_pred CCCCCh--hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316 190 KPQPLF--EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 190 ~~~~~~--~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
...... .....++|.+..+++++++.++..+++++..++..-... .....+++.+..+++++++.+|..++.+++
T Consensus 312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~ 388 (588)
T 1b3u_A 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLD 388 (588)
T ss_dssp SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 533221 345678899999999999999999999999987543221 122357888999999988999999999988
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 011316 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 346 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 346 (488)
.++...... .....+++.+..++.++ ++.+|..++.++..++.. ..+ .....+++.+...+.+++..+|..
T Consensus 389 ~l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~ 460 (588)
T 1b3u_A 389 CVNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp HHHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHH
Confidence 887633211 11235678888888887 899999999999988752 111 111236788888888889999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccH
Q 011316 347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL 426 (488)
Q Consensus 347 a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 426 (488)
|+.+++.++....++.. ...+++.|..++++++..+|..++.++..+....... . + ....+
T Consensus 461 a~~~l~~l~~~~~~~~~----~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-------------~-~-~~~~~ 521 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKEWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-------------I-T-TKHML 521 (588)
T ss_dssp HHHHHHHHHHHHCHHHH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-------------H-H-HHHTH
T ss_pred HHHHHHHHHHHhCchhH----HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-------------H-H-HHHHH
Confidence 99999999865443321 2357888888888889999999999999887653321 0 1 12346
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 427 EKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 427 ~~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+.+..+..+++++|+..+.+.+..+..
T Consensus 522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 522 PTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 777778888888898888888887765
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.80 E-value=2.4e-18 Score=175.20 Aligned_cols=382 Identities=12% Similarity=0.135 Sum_probs=285.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..+|.+...++++++.+|..|+.+|..++...+. ......++|.+.+++++++ ..+|..++.+++.++.....
T Consensus 203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~-- 275 (588)
T 1b3u_A 203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP-- 275 (588)
T ss_dssp THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--
Confidence 4577888888899999999999999998765421 1233458899999998888 89999999999999862111
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
......+++.+..+++++++.+|..++++|+.++...+. .+........++.+..++ ++.+..++..++++|..++.
T Consensus 276 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 276 -EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp -HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHH
T ss_pred -ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 112335689999999999999999999999999864332 111122234566777777 77889999999999999875
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
.-.. ......++|.+..+++++++.++..++.++..+....... .....+++.+..++.+.++.+|..++.+++.
T Consensus 354 ~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~ 428 (588)
T 1b3u_A 354 ILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428 (588)
T ss_dssp HHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 4211 1223567888999999999999999999998887543211 1223577888888999999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 347 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 347 (488)
++...... .+...+++.+...+.++ +..+|..|+.+++.++.. .++ .....++|.|..++.++++.+|..+
T Consensus 429 l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a 500 (588)
T 1b3u_A 429 LAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTT 500 (588)
T ss_dssp HHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHH
T ss_pred HHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 87532211 12234678888889888 889999999999999873 122 1123588888888888899999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHH
Q 011316 348 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE 427 (488)
Q Consensus 348 ~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 427 (488)
+++++.++...+.+ .....+++.|...++++++.++..+++++..+....... + .....++
T Consensus 501 ~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------~----~~~~~~p 561 (588)
T 1b3u_A 501 LFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------T----LQSEVKP 561 (588)
T ss_dssp HHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------H----HHHHHHH
T ss_pred HHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh-----------h----hHHHHHH
Confidence 99999998643222 122358999999999999999999999999997643211 1 1123456
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhc
Q 011316 428 KIENLQSHDNTEIYEKAVKILETYW 452 (488)
Q Consensus 428 ~l~~l~~~~~~~v~~~a~~~l~~~~ 452 (488)
.+..+.++++++|+..|...+..+-
T Consensus 562 ~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 562 ILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhh
Confidence 6777889999999999999998764
No 41
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.80 E-value=2.3e-18 Score=182.82 Aligned_cols=355 Identities=13% Similarity=0.143 Sum_probs=260.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..-+.+++.|.++++.+|..++.++..++..+.... ..+.++.|++.+.+++ +.++..++.+|+.++...++..
T Consensus 90 ~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~ 163 (852)
T 4fdd_A 90 FIKSECLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEIL 163 (852)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHh
Confidence 344567888888999999999999999988652221 2467899999999988 8999999999999987433321
Q ss_pred HHHH----hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316 110 RVVI----DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 110 ~~~~----~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~ 185 (488)
..-. -..+++.+++.+.++++.+|..|++++.++....+..... .-...++.++..+ .++++.++..++++|..
T Consensus 164 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~ 241 (852)
T 4fdd_A 164 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALA-GDEEPEVRKNVCRALVM 241 (852)
T ss_dssp HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHH-TCCCHHHHHHHHHHHHH
T ss_pred chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 1100 1235677778888899999999999999988654421100 0113466677766 67789999999999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhc-----------
Q 011316 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL----------- 251 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL----------- 251 (488)
++...+..-.....++++.+...+.+.++.++..++.++..++..... ...... .+++.++..+
T Consensus 242 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~ 319 (852)
T 4fdd_A 242 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLK 319 (852)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhc
Confidence 998654333334567888889999999999999999999999865421 112221 4556666666
Q ss_pred CC-----------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHH
Q 011316 252 RH-----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320 (488)
Q Consensus 252 ~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 320 (488)
.+ .+..+|..+..++..++...+. .++. .+++.+...++++ ++.+|..|++++++++.+..+..
T Consensus 320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp C------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHH
Confidence 23 2346788999999999875432 2222 4678888888888 99999999999999999766654
Q ss_pred HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHH-HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
.... .++++.++..+.++++.||..|++++++++...... ...++ .++++.|.+.+.++++.++..++++|.+++.
T Consensus 395 ~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 395 IPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4333 358999999999999999999999999998532110 00111 1467888888888899999999999999987
Q ss_pred hhh
Q 011316 400 AGE 402 (488)
Q Consensus 400 ~~~ 402 (488)
...
T Consensus 472 ~~~ 474 (852)
T 4fdd_A 472 EAC 474 (852)
T ss_dssp HHG
T ss_pred Hhh
Confidence 654
No 42
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.79 E-value=5.8e-16 Score=150.70 Aligned_cols=429 Identities=14% Similarity=0.132 Sum_probs=303.9
Q ss_pred hhcCCCCChhhHHHHhhhccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCc----------------cHHHHH-Hc
Q 011316 12 FSLLKPMDPMFFIIQLQLESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSP----------------PINEVI-QS 72 (488)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~~-~~ 72 (488)
-++.+.....+.+ ++++.++..|+. +|.++...++..|.++.+.+..+ ..+.++ +.
T Consensus 47 k~~sk~y~~~Vg~-----~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~ 121 (651)
T 3grl_A 47 KSLSKKYRLEVGI-----QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQ 121 (651)
T ss_dssp HHTTTTTTTHHHH-----HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHST
T ss_pred HHHHHHhHHHhhh-----hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCC
Confidence 4556666666667 899999999986 57888888999999988755221 122333 56
Q ss_pred CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch-hhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011316 73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE-NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150 (488)
Q Consensus 73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~ 150 (488)
+.++.|+.+|++.+ ..+|..++.+|..++...++ .++.+. ..++++.|+.+|++..+.+|..++.+|.+++.++++.
T Consensus 122 ~~i~~Ll~lL~~~d-f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 122 ENVTLLLSLLEEFD-FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp HHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhcCcc-HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence 78999999999998 89999999999999987766 677777 4499999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChh------HHH--
Q 011316 151 RDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDE------VLT-- 218 (488)
Q Consensus 151 ~~~~~~~~~i~~l~~~l~~~~---~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~------v~~-- 218 (488)
++.+.-.|+++.++.++.... ...+...++.++.+|.+.++ +.......++++.|..++..++.. ...
T Consensus 201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~ 280 (651)
T 3grl_A 201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNL 280 (651)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHH
Confidence 999999999999999995332 23678899999999999873 555556678999999998754321 222
Q ss_pred -HHHHHHHHhccCCc------hhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHHHhHhhcCCchhhHHHhhCC-----
Q 011316 219 -DACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ----- 284 (488)
Q Consensus 219 -~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----- 284 (488)
.++.++.-++..+. .....+.+.|++..+++++... ...++..|+.+++.+.++++.....+.+..
T Consensus 281 ~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~ 360 (651)
T 3grl_A 281 HLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNP 360 (651)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSS
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCC
Confidence 36667777665422 2345678889999999998765 467889999999999999887666554322
Q ss_pred ----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CC---hHHHHHHHhcCChhHHHHH
Q 011316 285 ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA----------GI---IGPLVNLLLNAEFEIKKEA 347 (488)
Q Consensus 285 ----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~---l~~L~~ll~~~~~~v~~~a 347 (488)
++..++.++.+.....+|.+|+.++..+..++++....+... +. -..++.-+.+.|+--.--|
T Consensus 361 ~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfA 440 (651)
T 3grl_A 361 PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCA 440 (651)
T ss_dssp CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHH
T ss_pred CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHH
Confidence 344455556666578899999999999999888766555542 11 1134455555666555668
Q ss_pred HHHHHHhccCCCHHHHHHHHH--------CCC---hHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccch
Q 011316 348 AWAISNATSGGSNEQIKFLVS--------QGC---IKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL 415 (488)
Q Consensus 348 ~~aL~~l~~~~~~~~~~~l~~--------~~~---~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~ 415 (488)
+.+|.++.... ++.+..+.+ ... ++.+..+|.. .++.++..-+-.|..-+.-++..
T Consensus 441 avil~hll~~n-~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A----------- 508 (651)
T 3grl_A 441 AVALAHALQEN-ATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA----------- 508 (651)
T ss_dssp HHHHHHHHTTC-HHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH-----------
T ss_pred HHHHHHHHcCC-HHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH-----------
Confidence 88888988753 444444433 111 3344555543 34454443333333322222221
Q ss_pred HHHHHHhhccHHHHHHhhcC-C---CHHHHHHHHHHHHHhcCCCCCC
Q 011316 416 FAQAIDDAEGLEKIENLQSH-D---NTEIYEKAVKILETYWVEEDED 458 (488)
Q Consensus 416 ~~~~l~~~g~~~~l~~l~~~-~---~~~v~~~a~~~l~~~~~~~~~~ 458 (488)
....+.+...++.|.+...+ . +.-|+-.+..++.-+|+...++
T Consensus 509 V~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~ 555 (651)
T 3grl_A 509 VTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNS 555 (651)
T ss_dssp HHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence 45666666568888876533 2 2347888888888877765543
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.78 E-value=9.3e-18 Score=178.20 Aligned_cols=387 Identities=15% Similarity=0.157 Sum_probs=273.8
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHH
Q 011316 40 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 119 (488)
Q Consensus 40 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 119 (488)
.+.++.+|..|+..|.+.+... ......-....+-+.+++.|.+++ +.+|..++.+++.++...... .-.+.++
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~wp~ll~ 131 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----NWPDLLP 131 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----TCTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----ccHHHHH
Confidence 4678999999999999987653 222222223345567778888887 899999999999998733110 1135789
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH----hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011316 120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL----SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195 (488)
Q Consensus 120 ~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 195 (488)
.|+..+.++++.+++.++.+|+.++.+.+.....-. -...++.+++.+ .+.++.++..|++++..+....+....
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~~ 210 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQALM 210 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence 999999999999999999999999865443211100 012355556666 677889999999999988765432222
Q ss_pred hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011316 196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 196 ~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
.....+++.+..++.++++.++..++++|..++...++.....++ ++++.+...+.+.++.++..|+..+..++....
T Consensus 211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~- 288 (852)
T 4fdd_A 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI- 288 (852)
T ss_dssp TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-
Confidence 234578888999999999999999999999999766544333333 577888888898899999999999999886431
Q ss_pred hhHHHhhC---CChHHHHHHh-----------cc--c--------chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011316 276 QTQCIINH---QALPCLLDLL-----------TQ--N--------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 331 (488)
Q Consensus 276 ~~~~~~~~---~~~~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 331 (488)
. ...+.. .+++.++..+ .+ . .+..+|+.|..++..++...++ .++. .+++.
T Consensus 289 ~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~ 363 (852)
T 4fdd_A 289 C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPL 363 (852)
T ss_dssp H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHH
Confidence 1 112221 3455566655 22 0 1346799999999998863222 1122 36788
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011316 332 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG 411 (488)
Q Consensus 332 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 411 (488)
+...+.++++.+|..|+++|++++..........+ .++++.+...++++++.++..+++++.++.........
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----- 436 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP----- 436 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-----
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-----
Confidence 88888888999999999999999986643222222 25789999999999999999999999999865432110
Q ss_pred ccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316 412 GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 412 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
..+.. +.++.+...+.+++++++..|.+.+.++.+.
T Consensus 437 --~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 437 --DTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp --TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred --HHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 00111 2356677777788999999999999887653
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.76 E-value=1.6e-15 Score=153.67 Aligned_cols=341 Identities=15% Similarity=0.190 Sum_probs=247.1
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
...+.+++.+++++..++..+..++..++... .+. . .-+++.+.+-|++++ +.+|..|+++++++. .++..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~---~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~--~~~~~ 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDM---A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIR--VDKIT 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHH---H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCC--SGGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chH---H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCC--hHHHH
Confidence 44667888888889988888877777766532 111 1 235678888899988 999999999999986 35544
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
..+ ++.+.+++.++++.+|..|+.++.+++...++. +.+.+.++.+..++ .+.++.++..|+.+|..++..
T Consensus 120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence 433 678999999999999999999999998766553 22235678888888 788999999999999999987
Q ss_pred CCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 190 KPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 190 ~~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
.+.. ......+.++.++..+.+.++..+...++++..++..++.... .+++.+..++++.++.++..|++++..
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 6433 2334456677888888888899999999999988865543322 567888888999999999999999999
Q ss_pred hhcC---CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH------------------HHHH----H
Q 011316 269 IVTG---DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN------------------QIQA----I 323 (488)
Q Consensus 269 l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~------------------~~~~----l 323 (488)
+... +++..+.+. ..+.+.++.++. + ++.+|..|+.++..++...++ .+.. +
T Consensus 266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L 342 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIM 342 (591)
T ss_dssp SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHH
T ss_pred HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHH
Confidence 8742 233333222 244566665554 5 677888888888877641111 1111 1
Q ss_pred H---Hc----CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011316 324 I---EA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 396 (488)
Q Consensus 324 ~---~~----~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~ 396 (488)
. +. .+++.|..++.+.+.+++..++++++.++....+ ... ..++.|.++++.....++..++.++..
T Consensus 343 ~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~-~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ 416 (591)
T 2vgl_B 343 IRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ-SAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRD 416 (591)
T ss_dssp HHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH-HHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh-HHH-----HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 1 11 2456666777777889999999999999876532 222 357888888888888888888888888
Q ss_pred HHHhhh
Q 011316 397 ILKAGE 402 (488)
Q Consensus 397 l~~~~~ 402 (488)
++...+
T Consensus 417 ii~~~p 422 (591)
T 2vgl_B 417 IFRKYP 422 (591)
T ss_dssp HHHHSC
T ss_pred HHHHCc
Confidence 876544
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.71 E-value=8e-16 Score=155.82 Aligned_cols=301 Identities=17% Similarity=0.150 Sum_probs=210.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.++.+.+.|+++++.+|..|+++|.++.. .+... .+++.+.+++.+++ +.+|..|+.++.++...+++...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence 46677788889999999999988888642 22222 34678899999988 99999999999999886665432
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011316 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
+.++++.+..+|.++++.++..|+.+|+.++.+.+.........+.+..++..+ .+.++-.+...+.++..++...
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence 246789999999999999999999999999987663210001112355677776 5567778888888887776332
Q ss_pred CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316 191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 191 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
......+++.+..++++.++.|+..|++++..+... +++..+.+. ..+.+.|+.++. +++.+|..++.+|+
T Consensus 234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 233467888888889999999999999999998742 233333333 255667776654 67888888888888
Q ss_pred HhhcCCchhh------------------HHHh-------hC----CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011316 268 NIVTGDDMQT------------------QCII-------NH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318 (488)
Q Consensus 268 ~l~~~~~~~~------------------~~~~-------~~----~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~ 318 (488)
.++...+... ...+ +. .+++.|...+.+. +..+|..+++++++++...+.
T Consensus 308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~ 386 (591)
T 2vgl_B 308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ 386 (591)
T ss_dssp HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence 8875322211 0000 11 2345556666677 889999999999999986554
Q ss_pred HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 319 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
... .+++.|++++...+..++..+..++.++..
T Consensus 387 ~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 387 SAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp HHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 322 245666676766666666666666666643
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.69 E-value=3e-15 Score=137.13 Aligned_cols=259 Identities=15% Similarity=0.162 Sum_probs=202.3
Q ss_pred HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc
Q 011316 69 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 69 ~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~ 148 (488)
....+.++.|++.|.+++ +.+|..|+++|+++.. + +.++.|+.++.++++.+|..++++|+.+.....
T Consensus 19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence 345678999999999988 9999999999999873 1 357899999999999999999999999864332
Q ss_pred hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011316 149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228 (488)
Q Consensus 149 ~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~ 228 (488)
.... .++.+...+..+.++.++..++++|..+....+ .....+++.+..++.++++.++..++++|+++.
T Consensus 87 ~~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 87 CEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp THHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred cchH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence 2111 223333333367889999999999999975331 123467899999999999999999999999875
Q ss_pred cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHH
Q 011316 229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT 308 (488)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~ 308 (488)
. .+.++.|..++.++++.+|..++++|+.+....+ ..++.+...++++ ++.+|..|+++
T Consensus 157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a 215 (280)
T 1oyz_A 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG 215 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 3 2578999999999999999999999999854322 3567889999988 89999999999
Q ss_pred HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHH
Q 011316 309 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIV 387 (488)
Q Consensus 309 L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~-~~~~v~ 387 (488)
|+++.. ...++.|+..+.+++ ++..++.+|+.+.. + ..++.|.+++.+ ++++++
T Consensus 216 L~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~ 270 (280)
T 1oyz_A 216 LSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII 270 (280)
T ss_dssp HHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred HHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence 999852 247888999988754 88999999999853 1 357788888864 566777
Q ss_pred HHHHHHHH
Q 011316 388 TVCLEGLE 395 (488)
Q Consensus 388 ~~al~~L~ 395 (488)
..++..|.
T Consensus 271 ~~~~~~l~ 278 (280)
T 1oyz_A 271 TSAIDKLK 278 (280)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 77776664
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.69 E-value=1.4e-13 Score=134.10 Aligned_cols=373 Identities=10% Similarity=0.090 Sum_probs=266.1
Q ss_pred hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC
Q 011316 27 LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT 105 (488)
Q Consensus 27 ~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~ 105 (488)
+..+.++.|+.+|.+++..+|+.+++.|..++...+......+. ..++++.|+.+|+++. +.+|..++..|.+++.++
T Consensus 119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~~n 197 (651)
T 3grl_A 119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTRSN 197 (651)
T ss_dssp HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHTTC
T ss_pred cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhcCC
Confidence 34578999999999999999999999999998876333556666 4599999999999998 899999999999999999
Q ss_pred chhhHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccccc-----HhHH
Q 011316 106 SENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-----LSML 176 (488)
Q Consensus 106 ~~~~~~~~~~g~i~~L~~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~-----~~v~ 176 (488)
++.++.+.-.|+++.|+.+++.+. ..+..-|+.++.||.+.++..+..+.+.+.++.|..++....+ ....
T Consensus 198 ~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~ 277 (651)
T 3grl_A 198 GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKV 277 (651)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHH
Confidence 999999999999999999998743 4788999999999999999899999999999999999842221 1122
Q ss_pred HH---HHHHHHHhhcCCCC-------CChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhC--
Q 011316 177 RN---ATWTLSNFCRGKPQ-------PLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAG-- 242 (488)
Q Consensus 177 ~~---a~~~L~~l~~~~~~-------~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~-- 242 (488)
.+ ++.++.-++..... .......|+++.+++++... ...++..++.+++.+.++++.....+.+..
T Consensus 278 ~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp 357 (651)
T 3grl_A 278 TNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAP 357 (651)
T ss_dssp HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEES
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCC
Confidence 33 55555566554321 12334578899999998865 578999999999999998877666665432
Q ss_pred -------CHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhC----------C---ChHHHHHHhcccchhhH
Q 011316 243 -------VCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINH----------Q---ALPCLLDLLTQNYKKSI 301 (488)
Q Consensus 243 -------~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~---~~~~L~~lL~~~~~~~v 301 (488)
++..|+.++.+ ....+|.+++.++..+...++.....+... + .-..+..-+-+. ++--
T Consensus 358 ~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~-d~~~ 436 (651)
T 3grl_A 358 SNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFST-DSLS 436 (651)
T ss_dssp SSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSS-CHHH
T ss_pred CCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccC-chHH
Confidence 33334444554 346889999999999999887554444421 1 112233444444 5544
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--------c---CChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHC
Q 011316 302 KKEACWTISNITAGNVNQIQAIIE--------A---GIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ 369 (488)
Q Consensus 302 ~~~a~~~L~nl~~~~~~~~~~l~~--------~---~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 369 (488)
-..|+.++..+..++++....... . ..++.+...+..+ ++.++.--+..|+..... ++.....+...
T Consensus 437 ~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e-~p~AV~dFL~~ 515 (651)
T 3grl_A 437 NWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSN-CPIAVTHFLHN 515 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhC-ChHHHHHHHcC
Confidence 456888888888887877665543 1 1255556666543 566666666777777665 45666666555
Q ss_pred C-ChHHHHhhcCC--CCHH--HHHHHHHHHHHHHHhhh
Q 011316 370 G-CIKPLCDLLNC--PDPR--IVTVCLEGLENILKAGE 402 (488)
Q Consensus 370 ~-~~~~L~~ll~~--~~~~--v~~~al~~L~~l~~~~~ 402 (488)
+ .++.|++.+.+ ++.+ ++-.+.-.|+-....+.
T Consensus 516 ~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~ 553 (651)
T 3grl_A 516 SANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFND 553 (651)
T ss_dssp TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccC
Confidence 5 58999987743 2233 33333344444444444
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.67 E-value=7.5e-15 Score=134.45 Aligned_cols=255 Identities=15% Similarity=0.115 Sum_probs=200.3
Q ss_pred hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
...++.+++.|.++++.+|..|++.|.++.. .+.++.|+++|++++ +.+|..|+++|+.+... +..
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~ 87 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKC 87 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTT
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-ccc
Confidence 3689999999999999999999999999642 236888999999998 89999999999998752 221
Q ss_pred hHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 109 TRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 109 ~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
.. .+++.|. .++.++++.+|..++++|+.+....+.... ..++.++..+ .+.++.++..++++|..+.
T Consensus 88 ~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 88 ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIN 156 (280)
T ss_dssp HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence 11 1234444 246778999999999999999744332211 2467788888 7889999999999999876
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011316 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~ 267 (488)
.. ..++.|+.++.++++.++..++++|+.+....+ ..++.|...+.++++.+|..++.+|+
T Consensus 157 ~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~ 217 (280)
T 1oyz_A 157 DK----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLS 217 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CH----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 42 478999999999999999999999999853332 34678889999999999999999999
Q ss_pred HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHH
Q 011316 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKE 346 (488)
Q Consensus 268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~ 346 (488)
.+.. ...++.|...++++ + +|..|+++|+.+.. + .+++.|..++.+. ++++...
T Consensus 218 ~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~ 272 (280)
T 1oyz_A 218 YRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITS 272 (280)
T ss_dssp HTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHH
T ss_pred HhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHH
Confidence 9862 24678889999776 4 88999999998853 2 4788999999764 6778887
Q ss_pred HHHHHH
Q 011316 347 AAWAIS 352 (488)
Q Consensus 347 a~~aL~ 352 (488)
+..+|.
T Consensus 273 ~~~~l~ 278 (280)
T 1oyz_A 273 AIDKLK 278 (280)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 777764
No 49
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.66 E-value=1.3e-14 Score=154.39 Aligned_cols=402 Identities=12% Similarity=0.134 Sum_probs=267.7
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT- 109 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~- 109 (488)
.++.+.+.+.+.+...|..|+.++..++............ ..+++.+++.+.+++ +.+|..++++++.++.......
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence 3455566667888999999999999987653212222222 257889999999988 9999999999999986221100
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-----chhHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHH
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-----PKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTL 183 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~-~~~~~v~~~a~~~L 183 (488)
..-.-..+++.++..+.++ +.++..+++++.+++... ......+ ...++.++..+.. +.++.++..++.++
T Consensus 448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 0000113577888888775 999999999999987531 1121222 1245667777732 33478999999999
Q ss_pred HHhhcCCCCCChhhhhchHHHHHHhhccC---------------ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011316 184 SNFCRGKPQPLFEQTRPALPALERLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~L~~ll~~~---------------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
..++...+.........+++.++..+... ...++..++.++..++...+........ .+++.+.
T Consensus 525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~ 603 (861)
T 2bpt_A 525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF 603 (861)
T ss_dssp HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence 99988764443444556777777776531 3457788999999888654432222222 5677788
Q ss_pred HhcCCCCc-chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011316 249 ELLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327 (488)
Q Consensus 249 ~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 327 (488)
..+.+.+. .++..++.+++.++..........+. .+++.+...++++ ++.+|..++.+++.++....+...... ..
T Consensus 604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~ 680 (861)
T 2bpt_A 604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DA 680 (861)
T ss_dssp HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HH
T ss_pred HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HH
Confidence 88877766 89999999999998754443333333 4788888888776 888999999999999874333333333 24
Q ss_pred ChHHHHHHHhcCC--hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC-----------HHHHHHHHHHH
Q 011316 328 IIGPLVNLLLNAE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD-----------PRIVTVCLEGL 394 (488)
Q Consensus 328 ~l~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~-----------~~v~~~al~~L 394 (488)
+++.+++.+.+++ .++|..++.+++.++.........++- .+++.+.+.++... ..++..+++++
T Consensus 681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~ 758 (861)
T 2bpt_A 681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY 758 (861)
T ss_dssp HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 7888888888764 889999999999998754434444443 36777777776431 35788888888
Q ss_pred HHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC----CHHHHHHHHHHHHHhcC
Q 011316 395 ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD----NTEIYEKAVKILETYWV 453 (488)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~----~~~v~~~a~~~l~~~~~ 453 (488)
..++....... ..+...+. ..++.+.....+. +..++..|..++..+..
T Consensus 759 ~~i~~~l~~~~--------~~~~~~~~--~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 759 VGIVAGLHDKP--------EALFPYVG--TIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp HHHHHHTTTCH--------HHHGGGHH--HHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCH--------HHHHHHHH--HHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHH
Confidence 88875432100 00121121 1244555554442 78999999999988765
No 50
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.65 E-value=8.2e-15 Score=148.91 Aligned_cols=362 Identities=14% Similarity=0.098 Sum_probs=260.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
-.++.+.+.|+++++.++..|+++|.++... + +. ..+++.+.++|.+++ +.+|..|+.++.++....|+..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~----~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS---E----MC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---H----HH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---H----HH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence 3567788889999999999999999997531 1 22 356888999999998 9999999999999998666543
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------------cccHhH
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSM 175 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~v 175 (488)
. ++++.+..++.+.++.++..|+.+|..++..+++....+. ..++.++..|.+ ..++-.
T Consensus 178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 2 5788888899999999999999999999977654322222 467778877743 247778
Q ss_pred HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011316 176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 249 (488)
Q Consensus 176 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 249 (488)
+..++.+|..++...+ .......+.+..++. +.+..+...+++++..+... +. +.. .++..|..
T Consensus 251 q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~ 320 (618)
T 1w63_A 251 QVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILGR 320 (618)
T ss_dssp HHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHHH
Confidence 8889999999887542 112334455555543 23467889999999987542 11 222 45678888
Q ss_pred hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 011316 250 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 329 (488)
Q Consensus 250 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 329 (488)
++.++++.++..|+.+|+.++...+.... .....++..+.++ +..+|..|+.++..++.... ... ++
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv 387 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM 387 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence 89999999999999999999976543222 3566788899988 89999999999999987421 111 45
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011316 330 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN 409 (488)
Q Consensus 330 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 409 (488)
+.|...+.+.+.+++..++.+++.++....+.... .++.|+++++.....+...++..+..++...+..+
T Consensus 388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~---- 457 (618)
T 1w63_A 388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMH---- 457 (618)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTH----
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHH----
Confidence 77888888889999999999999999754323222 36777788877666666667777777776544321
Q ss_pred CCccchHHHHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 011316 410 TGGVNLFAQAIDDAEGLEKIENLQSH--DNTEIYEKAVKILETYWV 453 (488)
Q Consensus 410 ~~~~~~~~~~l~~~g~~~~l~~l~~~--~~~~v~~~a~~~l~~~~~ 453 (488)
... +..+..++.+ ..+.+...+.|++.+|-+
T Consensus 458 -------~~~------v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 458 -------AYT------VQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp -------HHH------HHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred -------HHH------HHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 111 2233333321 234455678999999864
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.65 E-value=1.8e-14 Score=153.44 Aligned_cols=356 Identities=14% Similarity=0.220 Sum_probs=247.0
Q ss_pred ccHHHHHHHhcC-------CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhc
Q 011316 30 ESLPAMVAGVWS-------DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 102 (488)
Q Consensus 30 ~~i~~l~~~L~s-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~ 102 (488)
..+|.++..|.. ++..++..+..+|..++...+.... ..+++.+.+.+.+++ ..+|..|+++++.++
T Consensus 324 ~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIM 397 (861)
T ss_dssp HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHH
Confidence 567788888874 2357888999999887764321111 235677777888888 799999999999999
Q ss_pred CCCc-hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh---HHHHHhcCChHHHHHHhcccccHhHHHH
Q 011316 103 SGTS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC---RDLVLSNGALMPLLAQFNEHAKLSMLRN 178 (488)
Q Consensus 103 ~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~v~~~ 178 (488)
.... +.....+. .+++.++..+.++++.+|..++++++.++...... ...+ ...++.++..+ .+. +.++..
T Consensus 398 ~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l-~~~-~~v~~~ 472 (861)
T 2bpt_A 398 DGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGL-QDH-PKVATN 472 (861)
T ss_dssp SSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHH-TSC-HHHHHH
T ss_pred cCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHh-ccC-hHHHHH
Confidence 8543 32222222 47888999999999999999999999997532110 0011 12466777777 343 889999
Q ss_pred HHHHHHHhhcCCC----CCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC
Q 011316 179 ATWTLSNFCRGKP----QPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 252 (488)
Q Consensus 179 a~~~L~~l~~~~~----~~~~~~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~ 252 (488)
+++++.+++.... .........+++.+...+.+.+ +.++..++.+++.++...+......+. .+++.++..+.
T Consensus 473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~ 551 (861)
T 2bpt_A 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLG 551 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHH
Confidence 9999999987532 2222345677888888888543 789999999999998665544333333 35555555553
Q ss_pred C---------------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchh-hHHHHHHHHHHHHhcCC
Q 011316 253 H---------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNITAGN 316 (488)
Q Consensus 253 ~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~ 316 (488)
. ....++..++.++..++...+.......+ .+++.+...+++. +. .++..++.+++.++...
T Consensus 552 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~ 629 (861)
T 2bpt_A 552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKK-DSAFIEDDVFYAISALAASL 629 (861)
T ss_dssp HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHH
Confidence 2 13457778999999998765543222222 5677788888777 56 89999999999998632
Q ss_pred HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC--HHHHHHHHHHH
Q 011316 317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGL 394 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~--~~v~~~al~~L 394 (488)
.......+. .+++.+...+.++++.++..++.++..++.........++. .+++.+.+.+.+++ ++++..++.++
T Consensus 630 ~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 630 GKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD--AMMNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp GGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred hhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHH--HHHHHHHHHhCCccccHhhhHHHHHHH
Confidence 222222232 37889999998888899999999999998655433333322 46777778777654 78999999999
Q ss_pred HHHHHhhh
Q 011316 395 ENILKAGE 402 (488)
Q Consensus 395 ~~l~~~~~ 402 (488)
..++....
T Consensus 707 ~~l~~~~~ 714 (861)
T 2bpt_A 707 GDIASNIG 714 (861)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHhh
Confidence 99987643
No 52
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.63 E-value=3.6e-14 Score=151.42 Aligned_cols=399 Identities=16% Similarity=0.177 Sum_probs=252.8
Q ss_pred ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011316 30 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
..++.+.+.+.++ +..+|..|++++..++..-............+++.+.+.+.+++ +++|..++.+|..++...++
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHH
Confidence 4566677778776 68999999999999875421000001111235777788887777 89999999999999975555
Q ss_pred hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch------------------hHHHH--HhcCChHHHHHHh
Q 011316 108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK------------------CRDLV--LSNGALMPLLAQF 167 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~------------------~~~~~--~~~~~i~~l~~~l 167 (488)
.....+...+++.++..+.+.++.++..++..+..++..... ..... .-...++.++..+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 444444457888888888888999999999999888743110 00000 0012455666666
Q ss_pred cc------cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-hhHHHHHH
Q 011316 168 NE------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIE 240 (488)
Q Consensus 168 ~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~ 240 (488)
.+ +.+..++..+..++..++...+. .....+++.+...+.++++.++..++++++.++.... +......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 32 23457888999999888765431 2345677888888888999999999999999997654 3333333
Q ss_pred hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh--HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH-
Q 011316 241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV- 317 (488)
Q Consensus 241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~- 317 (488)
..+++.++..+.++++.+|..|++++++++...+... ...+ ..+++.++..+.++ +.++..+++++.+++....
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~ 483 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAYE 483 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhh
Confidence 3578999999999999999999999999997544321 1111 24667777877663 7789999999999885311
Q ss_pred -------------HHHHHHHHcCChHHHHHHHhcC---ChhHHHHHHH--------------------------------
Q 011316 318 -------------NQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAW-------------------------------- 349 (488)
Q Consensus 318 -------------~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~-------------------------------- 349 (488)
+.....+ ..+++.|+..+... +..++..+..
T Consensus 484 ~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 562 (876)
T 1qgr_A 484 AADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL 562 (876)
T ss_dssp TTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHH
Confidence 0011111 12455555555432 2234444444
Q ss_pred ------------------------HHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhhh
Q 011316 350 ------------------------AISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 350 ------------------------aL~~l~~~~~-~~~~~~l~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~ 402 (488)
++..++...+ .....++ ..+++.+..++++.. +.++..++.++..++....
T Consensus 563 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~ 640 (876)
T 1qgr_A 563 QMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG 640 (876)
T ss_dssp TTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG
T ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH
Confidence 4444443332 2222221 125667777777654 4788899999999986533
Q ss_pred hhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 011316 403 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYW 452 (488)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~-~~~v~~~a~~~l~~~~ 452 (488)
..- .+|... .++.+...+.+. +++++..|...+..+.
T Consensus 641 ~~~--------~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 641 GEF--------LKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp GGG--------GGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hhH--------HHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 211 112222 245555555544 7788877777665543
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.62 E-value=1.1e-14 Score=143.55 Aligned_cols=391 Identities=12% Similarity=0.108 Sum_probs=268.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhH
Q 011316 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
+..++..+.+++..+|..|-..|.++.... ..+++..|..++.+++ ++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 445777788999999999999998854311 1246677778887652 489999999999998763311110
Q ss_pred H--------H---HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHH
Q 011316 111 V--------V---IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLR 177 (488)
Q Consensus 111 ~--------~---~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~v~~ 177 (488)
. + ....+-..++..+.++++.+ ..++.+++.++...... . .-.+.++.++..+ .+. ++.++.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l-~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANV-TNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHh-ccCCCCHHHHH
Confidence 0 0 01123456777788877778 88999999987532110 0 0124677788888 555 889999
Q ss_pred HHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHH-HHHHhCCHHHHHHhcCC
Q 011316 178 NATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRH 253 (488)
Q Consensus 178 ~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~ 253 (488)
.++.+|..++... +.........+++.+...+.++ +..++..+++++.++...-.+... .....-+++.+...+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999998753 2222334467888899999887 789999999999987643221110 01111246667777788
Q ss_pred CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH---------------
Q 011316 254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN--------------- 318 (488)
Q Consensus 254 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--------------- 318 (488)
+++.++..++.++..++...+......+...+++.++..+++. ++.++..|+..+..++.....
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 307 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 8899999999999999976554333333326777788888777 889999999999888753110
Q ss_pred ------HHHHHHHcCChHHHHHHHhcC-------ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011316 319 ------QIQAIIEAGIIGPLVNLLLNA-------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385 (488)
Q Consensus 319 ------~~~~l~~~~~l~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 385 (488)
...... ..++|.++..+... ++.+|..|+.+|..++......... .+++.+...+.++++.
T Consensus 308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWR 381 (462)
T ss_dssp SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHH
T ss_pred cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChH
Confidence 011111 23577777777532 4578999999999998654322222 3577888889999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011316 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
++..++.+++.+........ +...+ ...++.+...+.++++.|+..|.+.+.++...-
T Consensus 382 ~r~aal~~l~~l~~~~~~~~----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcCCcHHH----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999875322110 01111 345788888899999999999999999987643
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.61 E-value=7.6e-14 Score=141.80 Aligned_cols=383 Identities=13% Similarity=0.113 Sum_probs=257.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
..++.+.+.|.+.++.+|..|+.++.++.... ++.. .++++.+..+|.+.+ +.++..|+.+|..++..+++..
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~ 214 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDML 214 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHH
Confidence 44788899999999999999999999998764 3322 267888899999888 9999999999999998655543
Q ss_pred HHHHhCCCHHHHHHhhCC---------------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-----c
Q 011316 110 RVVIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----E 169 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----~ 169 (488)
..+. ..++.++..|.+ .++-.+...+.+|+.++..++...+ ...+.+..++. +
T Consensus 215 ~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 215 AHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSK 287 (618)
T ss_dssp HHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSS
T ss_pred HHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcccccc
Confidence 3332 567777776642 4788899999999999877664322 23344444431 2
Q ss_pred cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011316 170 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE 249 (488)
Q Consensus 170 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 249 (488)
+.+..+...+++++..+... ......+++.+..++.+.++.++..++.+|..++...+.. +. .....++.
T Consensus 288 ~~~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~ 357 (618)
T 1w63_A 288 NVGNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVD 357 (618)
T ss_dssp THHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHH
Confidence 34567888888888886432 1223467788888899889999999999999998765432 22 45678888
Q ss_pred hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC---H-HHHHHHH-
Q 011316 250 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN---V-NQIQAII- 324 (488)
Q Consensus 250 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~---~-~~~~~l~- 324 (488)
++.+++..+|..|+.++..++.... ... +++.+...+.+. +.++|..++.+++.++... . .....++
T Consensus 358 ~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~ 429 (618)
T 1w63_A 358 CLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKRWHIDTIMR 429 (618)
T ss_dssp GGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred HccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 8998899999999999999987432 222 346677777777 7889999999998888731 1 1111111
Q ss_pred --H-c------------------------CChHHHHHHHhcC--ChhHHHHHHHHHHHhccCC-------------CHHH
Q 011316 325 --E-A------------------------GIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG-------------SNEQ 362 (488)
Q Consensus 325 --~-~------------------------~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~-------------~~~~ 362 (488)
. . .++..|+..+.+. ...+...++|+|+..+..- .+.
T Consensus 430 lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~- 508 (618)
T 1w63_A 430 VLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTED- 508 (618)
T ss_dssp HHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHH-
T ss_pred HHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHH-
Confidence 1 0 1344455555542 2334445677776665210 111
Q ss_pred HHHHHHCCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHH
Q 011316 363 IKFLVSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440 (488)
Q Consensus 363 ~~~l~~~~~~~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v 440 (488)
.+++.|..+++ ..++.++..++.++.++....+.. ...+. ..|..+..+.+.+|
T Consensus 509 -------~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~------------~~~l~-----~~L~~~~~~~d~ev 564 (618)
T 1w63_A 509 -------EVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT------------VNRIK-----KVVSIYGSSIDVEL 564 (618)
T ss_dssp -------HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC------------HHHHH-----HHHHHHTTCSCHHH
T ss_pred -------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch------------HHHHH-----HHHHHhcCCCCHHH
Confidence 12445555554 467899999999999887665421 22222 33566678899999
Q ss_pred HHHHHHHHHHhcCCCC----CCCCCCCCCCCCC
Q 011316 441 YEKAVKILETYWVEED----EDEPLPPGDATQA 469 (488)
Q Consensus 441 ~~~a~~~l~~~~~~~~----~~~~~~~~~~~~~ 469 (488)
|++|...+.-+....+ --+++|+..+.+.
T Consensus 565 rdRA~~y~~ll~~~~~~~~~vl~~~P~~~~~~~ 597 (618)
T 1w63_A 565 QQRAVEYNALFKKYDHMRSALLERMPVMEKVTT 597 (618)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHSCCCCCCC---
T ss_pred HHHHHHHHHHHcCcHHHHHHHhhcCCCCCcccc
Confidence 9999988776543211 1134777665433
No 55
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.60 E-value=1.2e-13 Score=152.31 Aligned_cols=407 Identities=12% Similarity=0.138 Sum_probs=271.1
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.++.++..+.+.|+++|..|...|.+.+..... ..+.-....+++.+++.|.+++ +.+|..|+.+|+.++...++.
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-- 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-- 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence 477899999999999999999999987654311 1111112346788889998887 899999999999999754431
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH-----HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-----~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~ 185 (488)
.+ ..+++.++..+.++++.+|..++.+|+.++...+... ..-.-...++.++..+.++.+..++..++.++..
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD 160 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 11 1357888888888888999999999999875433210 0011123677888888435778999999999999
Q ss_pred hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHH
Q 011316 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALR 264 (488)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~ 264 (488)
++...+..-......+++.+...+.+++..++..++.+++.++...++. ++ ..+++.++..+.+. ++.++..++.
T Consensus 161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHH
Confidence 9864422222345778888889999999999999999999999765432 22 24577777777543 3578888999
Q ss_pred HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-------
Q 011316 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------- 337 (488)
Q Consensus 265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~------- 337 (488)
+++.++...+......+ ..+++.++..+.+. ++.+|..++.++..++...++.....+. .+++.+++.+.
T Consensus 237 ~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 237 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----
T ss_pred HHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCC
Confidence 99999875443222222 36889999999887 8899999999999988732221111111 13333333221
Q ss_pred ------------------------------cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHH
Q 011316 338 ------------------------------NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 387 (488)
Q Consensus 338 ------------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~ 387 (488)
+..+.+|..|+.++..++.........+ . ..+++.+...+.+.++.++
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~-~-~~l~~~l~~~l~d~~~~Vr 391 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-Y-KTVSPALISRFKEREENVK 391 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH-H-TTTHHHHHSTTSCSSSHHH
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH-H-HHHHHHHHHHcCCCchHHH
Confidence 1124679999999999987443212222 2 3578888888988899999
Q ss_pred HHHHHHHHHHHHhhhhhhccCC-------CCcc-chHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316 388 TVCLEGLENILKAGEAEKNMGN-------TGGV-NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 388 ~~al~~L~~l~~~~~~~~~~~~-------~~~~-~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
..++.++..++........... .++. ..+...+ ...++.+...+.+++..++..+...+..+...
T Consensus 392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~ 464 (1230)
T 1u6g_C 392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVNV 464 (1230)
T ss_dssp HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 9999999888764321000000 0000 0001111 12355566667888889988888888776654
No 56
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.59 E-value=8.9e-14 Score=148.35 Aligned_cols=407 Identities=14% Similarity=0.148 Sum_probs=261.6
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT- 109 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~- 109 (488)
.++.+...+.++++.+|..|++++..++.....+...... ..+++.++..+++++ +.+|..|++++++++...+...
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence 4555666777889999999999999987654212222222 458999999999988 9999999999999997433210
Q ss_pred -HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc---------------hhHHHHHhcCChHHHHHHhccc--c
Q 011316 110 -RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP---------------KCRDLVLSNGALMPLLAQFNEH--A 171 (488)
Q Consensus 110 -~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~i~~l~~~l~~~--~ 171 (488)
... -..+++.++..+.++ +.++..++++|.+++.... .....+ ...++.++..+... .
T Consensus 445 ~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~ 520 (876)
T 1qgr_A 445 NDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH 520 (876)
T ss_dssp STTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred cHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence 001 114567788888774 8999999999999974311 011111 12456666666432 2
Q ss_pred cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc----------C-C----hhHHHHHHHHHHHhccCCc-hhH
Q 011316 172 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----------N-D----DEVLTDACWALSYLSDGTN-DKI 235 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~----------~-~----~~v~~~al~~L~~l~~~~~-~~~ 235 (488)
+..++..+..++..++..............++.++..+.. . + +.++..++.++..++.... ...
T Consensus 521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~ 600 (876)
T 1qgr_A 521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA 600 (876)
T ss_dssp STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence 4578888999999988876544444556777777766652 1 2 4567888999999887655 333
Q ss_pred HHHHHhCCHHHHHHhcCCCC--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316 236 QAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
.... ..+++.++.++++.. +.++..++.+++.++..........++ .+++.+...+.+..++.+|..|+++++.++
T Consensus 601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC 678 (876)
T ss_dssp HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 3222 257788888888764 478999999999998754333332233 367788888876546789999999999998
Q ss_pred cCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC--------
Q 011316 314 AGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD-------- 383 (488)
Q Consensus 314 ~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~-------- 383 (488)
........... ..+++.++..+.+ .+.+++..+++++++++.....+...++- .+++.+.+.++.+.
T Consensus 679 ~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~--~~~~~l~~~~~~~~~~~d~~~~ 755 (876)
T 1qgr_A 679 RALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE--VVLNTLQQASQAQVDKSDYDMV 755 (876)
T ss_dssp HHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHTCCCCTTCHHHH
T ss_pred HHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHhccCCCCChHHH
Confidence 73222223323 2478888888887 36789999999999997633223322221 35666666665432
Q ss_pred ---HHHHHHHHHHHHHHHHhhhhhhc--cCCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcC
Q 011316 384 ---PRIVTVCLEGLENILKAGEAEKN--MGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWV 453 (488)
Q Consensus 384 ---~~v~~~al~~L~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~ 453 (488)
..++..++.++..++........ ..+.....+|...+ +..+..+..++ +..++..|..++..+..
T Consensus 756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 26788888888888765321100 00000011122222 34445554555 78999999998887654
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.57 E-value=1.7e-14 Score=142.18 Aligned_cols=360 Identities=14% Similarity=0.120 Sum_probs=242.3
Q ss_pred cHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCcc----------HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHH
Q 011316 31 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPP----------INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWAL 98 (488)
Q Consensus 31 ~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L 98 (488)
.+..++..+.++ ++.+|..|+..|.+++....... ...-....+-..++..|.+++ +.+ ..++.++
T Consensus 36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i 113 (462)
T 1ibr_B 36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV 113 (462)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence 344566666654 68999999999999876431000 001112234456777888877 678 8899999
Q ss_pred HHhcCCC-chhhHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccc-cH
Q 011316 99 TNIASGT-SENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHA-KL 173 (488)
Q Consensus 99 ~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~-~~ 173 (488)
+.++... ++. .-.++++.|+..+.++ ++.+++.++.+|+.++... +....... ...++.++..+.... +.
T Consensus 114 ~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~ 188 (462)
T 1ibr_B 114 AGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSN 188 (462)
T ss_dssp HHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCH
Confidence 9998732 210 1136789999999887 8999999999999998643 21111111 125667777774332 78
Q ss_pred hHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc
Q 011316 174 SMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 251 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL 251 (488)
.++..++.++.++..... .........+++.+...+.+++..++..+++++..++...+......+..++++.++..+
T Consensus 189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~ 268 (462)
T 1ibr_B 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268 (462)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998764321 001111123466777777888999999999999999865544322222225667777778
Q ss_pred CCCCcchHhHHHHHHhHhhcCCch-----------------hhHHHhh---CCChHHHHHHhccc------chhhHHHHH
Q 011316 252 RHPSPSVLIPALRTVGNIVTGDDM-----------------QTQCIIN---HQALPCLLDLLTQN------YKKSIKKEA 305 (488)
Q Consensus 252 ~~~~~~v~~~a~~~L~~l~~~~~~-----------------~~~~~~~---~~~~~~L~~lL~~~------~~~~v~~~a 305 (488)
.+.++.++..++..+..++..... ....+++ ..+++.++..+... .++.+|..|
T Consensus 269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a 348 (462)
T 1ibr_B 269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (462)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHH
Confidence 888899999999999888763200 0000111 23556666666432 145789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011316 306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385 (488)
Q Consensus 306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~ 385 (488)
+.+|..++...++ .++ ..+++.+...+.+.++.+|..|+.+++.++....++...... ..+++.+...+.++++.
T Consensus 349 ~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~ 423 (462)
T 1ibr_B 349 GVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV 423 (462)
T ss_dssp HHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence 9999999873222 122 236778888888889999999999999999765422111111 35788999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 011316 386 IVTVCLEGLENILKAGE 402 (488)
Q Consensus 386 v~~~al~~L~~l~~~~~ 402 (488)
++..|+++|.++.....
T Consensus 424 Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 424 VRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999987654
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.56 E-value=1.8e-13 Score=151.06 Aligned_cols=399 Identities=12% Similarity=0.142 Sum_probs=262.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc----HHHHHHcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCC
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASG 104 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~ 104 (488)
..++.++..+.++++.+|..|+.+|..++....... ...-....++|.|++.+.+ ++ +.++..|+.++..++..
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHH
Confidence 345667777777777788888888887765442210 0111234578999999984 66 89999999999999852
Q ss_pred CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011316 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184 (488)
Q Consensus 105 ~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~ 184 (488)
.++..... -..+++.+...+.++++.+|..|+.+++.++...+. .+ -...++.++..+....+..++..++.++.
T Consensus 165 ~~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~ 239 (1230)
T 1u6g_C 165 QGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIA 239 (1230)
T ss_dssp TCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred hHhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 22111000 123567777888888999999999999999876442 11 12357778877754444567778888888
Q ss_pred HhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-----------
Q 011316 185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----------- 253 (488)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----------- 253 (488)
.++...+..-......+++.+...+.+.++.++..++.++..++...+........ .+++.++..+..
T Consensus 240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~ 318 (1230)
T 1u6g_C 240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDE 318 (1230)
T ss_dssp HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCccccc
Confidence 88875433222345789999999999889999999999999988654433222222 344555444421
Q ss_pred --------------------------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHH
Q 011316 254 --------------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW 307 (488)
Q Consensus 254 --------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~ 307 (488)
..+.+|..|+.++..++...+......+ ..+++.++..+.+. ++.+|..++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~ 396 (1230)
T 1u6g_C 319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFH 396 (1230)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHH
T ss_pred ccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHH
Confidence 1235688899999998875543333333 35778888888777 8899999999
Q ss_pred HHHHHhcC--C-----------------HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011316 308 TISNITAG--N-----------------VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS 368 (488)
Q Consensus 308 ~L~nl~~~--~-----------------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 368 (488)
++..+... . .......+ ..+++.+...++++++.+|..++.+|+.++.........++
T Consensus 397 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l-- 473 (1230)
T 1u6g_C 397 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI-- 473 (1230)
T ss_dssp HHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--
T ss_pred HHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--
Confidence 88877651 1 11112222 23677777778888999999999999998765321111121
Q ss_pred CCChHHHHhhcCCCCH--HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHH
Q 011316 369 QGCIKPLCDLLNCPDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446 (488)
Q Consensus 369 ~~~~~~L~~ll~~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~ 446 (488)
..+++.+...++++.+ .++..++..+..++....... +...+. ..++.+.....+++..++..|..
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~----------~~~~l~--~llp~L~~~l~d~~~~v~~~al~ 541 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV----------FHPHVQ--ALVPPVVACVGDPFYKITSEALL 541 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG----------GHHHHT--TTHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH----------HHhHHH--HHHHHHHHHHcccchHHHHHHHH
Confidence 1357788888887654 888888888888875322110 233332 34666777777788888777777
Q ss_pred HHHHhc
Q 011316 447 ILETYW 452 (488)
Q Consensus 447 ~l~~~~ 452 (488)
.+..+.
T Consensus 542 ~l~~l~ 547 (1230)
T 1u6g_C 542 VTQQLV 547 (1230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776555
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.46 E-value=4.2e-12 Score=110.77 Aligned_cols=188 Identities=20% Similarity=0.198 Sum_probs=157.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+.++.|++.|.++++.+|..|+..|..+.. .+.++.|+++|.+++ +.+|..|+++|+.+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 779999999999999999999999998532 257899999999988 9999999999999864
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
.+.++.|+..+.++++.+|..++++|+.+.. + ..++.++..+ .++++.++..++++|..+..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence 2468999999999999999999999999843 1 3578888888 88899999999999999853
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
...++.+..++.++++.++..++.+|+.+.. ...++.|..++.++++.+|..|..+|.++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999843 14567788888889999999999999998
Q ss_pred hcCCc
Q 011316 270 VTGDD 274 (488)
Q Consensus 270 ~~~~~ 274 (488)
...+.
T Consensus 202 ~~~~~ 206 (211)
T 3ltm_A 202 KSFNH 206 (211)
T ss_dssp -----
T ss_pred CCCCC
Confidence 76543
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.44 E-value=6.3e-12 Score=108.73 Aligned_cols=184 Identities=20% Similarity=0.204 Sum_probs=157.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
+..+.+++.|.++++.+|..|++.|..+.. ...++.|+++|.+++ +.+|..|+++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 677899999999999999999999998542 246889999999888 9999999999999864
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
...++.|+..+.++++.+|..++++|+.+.. + ..++.++..+ .+.++.++..++++|..+..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence 2468999999999999999999999999842 1 2577888888 78899999999999999853
Q ss_pred CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011316 190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l 269 (488)
...++.+..++.++++.++..++.+|+.+.. ...++.|..++.++++.++..|..+|..+
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999832 13567788888888999999999999886
Q ss_pred h
Q 011316 270 V 270 (488)
Q Consensus 270 ~ 270 (488)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.43 E-value=2e-11 Score=105.51 Aligned_cols=184 Identities=20% Similarity=0.238 Sum_probs=157.7
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011316 116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195 (488)
Q Consensus 116 g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 195 (488)
+..+.++..|+++++.+|..|++.|+.+.. ...++.++..+ .+.++.++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence 457899999999999999999999998753 13578889999 78899999999999998753
Q ss_pred hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011316 196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 196 ~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
...++.+..++.++++.++..++++|+.+.. ...++.|..++.++++.++..++++|+.+..
T Consensus 75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2578999999999999999999999998753 1467888999999999999999999999853
Q ss_pred hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
...++.|..++.++ ++.+|..|+++|+.+. .++ .++.|..++.++++.++..|..+|..+-
T Consensus 137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 24678899999988 9999999999999983 233 5778888899999999999999999875
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.43 E-value=8.3e-12 Score=108.90 Aligned_cols=187 Identities=21% Similarity=0.216 Sum_probs=157.8
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011316 72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151 (488)
Q Consensus 72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (488)
.+.++.|+++|++++ +.+|..|++.|+.+.. .+.++.|+.++.++++.+|..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 467899999999988 9999999999998864 2568999999999999999999999999852
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
.+.++.++..+ .+.++.++..++++|..+.. ...++.+..++.++++.++..++.+|+.+..
T Consensus 80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 13577888888 78899999999999999854 3578999999999999999999999999843
Q ss_pred chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
...++.|..++.++++.++..++.+|+.+.. ...++.|..+++++ ++.+|..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 1467889999999999999999999999853 13567788889888 89999999999999
Q ss_pred HhcC
Q 011316 312 ITAG 315 (488)
Q Consensus 312 l~~~ 315 (488)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 8764
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.41 E-value=1.9e-11 Score=123.77 Aligned_cols=367 Identities=11% Similarity=0.094 Sum_probs=243.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhh--cCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL--SRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
.++.+.+.|+++++.++-.|++++.++.. .+ +. ..+++.+.++| .+.+ +.+|..|+.++.++...+|+.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e----~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS---RE----MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HH----HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC---HH----HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence 46678888899999999999999999743 12 22 24678888999 7778 999999999999999855543
Q ss_pred hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc----c--c----------cc
Q 011316 109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----E--H----------AK 172 (488)
Q Consensus 109 ~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~--~----------~~ 172 (488)
.. ..+.++.+..+|.+.++.++..|+.++..++..++.. + ...++.+++.|. . . .+
T Consensus 183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 32 2488999999999999999999999999998766531 1 122333443331 1 1 15
Q ss_pred HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh---------ccCC--hhHHHHHHHHHHHhccCCchhHHHHHHh
Q 011316 173 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA 241 (488)
Q Consensus 173 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll---------~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~ 241 (488)
+-.+...+..+..++..............+..++..+ ++.+ ..+...+..++..+.. .+. +..
T Consensus 255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~----~~~- 328 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPN----LLV- 328 (621)
T ss_dssp HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHH----HHH-
T ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHH----HHH-
Confidence 6677788887777764321111111222333333322 1122 3788888888888863 222 222
Q ss_pred CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHH
Q 011316 242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQI 320 (488)
Q Consensus 242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~ 320 (488)
.++..|..++.+.++.++..++..|..++...+. . ..+. .....++..+. ++ +..+|..++.++..++. +.+.
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~-~~~~-~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv 402 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-H-EAVK-THIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA 402 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-H-HHHH-TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-H-HHHH-HHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence 4567788889888999999999999999986542 1 1222 45677888888 77 89999999999999974 3444
Q ss_pred HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
.. ++..|...+...+.+++..++.+++.++..-.+... -.+..|.+++......+...+...+..++..
T Consensus 403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~------~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~ 471 (621)
T 2vgl_A 403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT------WYVDTILNLIRIAGDYVSEEVWYRVIQIVIN 471 (621)
T ss_dssp HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH------HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 33 456688888888999999999999998743211111 1366677777655544555556666666654
Q ss_pred hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011316 401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE 454 (488)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~ 454 (488)
.+.. +... +..+.+...++ ...+...+.|++.+|-+.
T Consensus 472 ~~~~------------~~~~-----~~~l~~~l~~~~~~~~li~~~~wilGEy~~~ 510 (621)
T 2vgl_A 472 RDDV------------QGYA-----AKTVFEALQAPACHENLVKVGGYILGEFGNL 510 (621)
T ss_dssp GCSC------------HHHH-----HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHH
T ss_pred ChhH------------HHHH-----HHHHHHHHcCccchHHHHHHHHHHhcchHHH
Confidence 4322 1111 22233333332 345667788999988653
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.36 E-value=3e-10 Score=114.96 Aligned_cols=332 Identities=13% Similarity=0.109 Sum_probs=234.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
+.+.+++.+.+++...+..+.-++..++... .+.. . =++..+.+-|++++ +.++..|+++++++.. ++...
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~---~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELI---R--LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHH---H--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHH---H--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence 4566888999999999888888888866543 2211 1 14567778888888 9999999999999964 55444
Q ss_pred HHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 111 VVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
.+++.+.+++ .+.++.+|..|+.++..+....|+. +...+.++.+.++| .+.|+.++..|+.++..++.
T Consensus 146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence 3468888999 8899999999999999998766542 22236788888888 78899999999999999987
Q ss_pred CCCCCChhhhhchHHHHHHhhccC-------------ChhHHHHHHHHHHHhccCC-chhHHHHHHhCCHHHHHHhcC-C
Q 011316 189 GKPQPLFEQTRPALPALERLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLR-H 253 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~-------------~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~-~ 253 (488)
..+..-.......+..+.+++..+ ++-.+...+..+..++... +.....+. +.+..++..+. .
T Consensus 217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~ 294 (621)
T 2vgl_A 217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEP 294 (621)
T ss_dssp HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSC
T ss_pred hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccC
Confidence 653211112233334444444322 5788999999999988643 23323222 23344443321 1
Q ss_pred C--------C--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011316 254 P--------S--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323 (488)
Q Consensus 254 ~--------~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 323 (488)
+ + ..+...+..++..+.. +++... .++..|..++.++ ++.+|..|+..+..++...+. . ..
T Consensus 295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~ 365 (621)
T 2vgl_A 295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EA 365 (621)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HH
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HH
Confidence 1 2 2677788888888753 222222 3566788888888 889999999999999885432 1 12
Q ss_pred HHcCChHHHHHHHh-cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 324 IEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 324 ~~~~~l~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
+ ....+.++.++. ++|..++..++..|..++. ...... ++..|...+...+.+++..++.++..+...
T Consensus 366 ~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 366 V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 2 246778888888 8899999999999999974 344444 466677777778899999999888888654
No 65
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.12 E-value=5.5e-09 Score=96.47 Aligned_cols=279 Identities=14% Similarity=0.071 Sum_probs=165.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT 109 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~ 109 (488)
...+.++++++++|..++...--.+..++.. +.+.. =++..|.+=+++++ +-+|..|+++++++.. ++..
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~ 137 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STML 137 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHH
Confidence 3455678899999999998888888776554 23322 25678888899999 9999999999999986 4443
Q ss_pred HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 110 ~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
+. +.+.+.+.+.+.++-+|..|+.+...+....|+.. + +.+..+-+++ .+.++.++.+|+.++..+...
T Consensus 138 ~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 138 QA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred HH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence 33 35778888999999999999999999998877632 2 5788888888 778899999999999999875
Q ss_pred CCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCC-chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011316 190 KPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265 (488)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~ 265 (488)
+ ...+..++..+... ++-.+...++.+..++..+ +.. ...+++.+..+|++.++.|...|+.+
T Consensus 207 d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~ 273 (355)
T 3tjz_B 207 D--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASA 273 (355)
T ss_dssp C--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHH
T ss_pred c--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 3 22444555555432 4666666666666666554 222 23677888888999999999999999
Q ss_pred HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011316 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK 345 (488)
Q Consensus 266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~ 345 (488)
+..+....... . ..++..+..++.++ ++.+|..|+..|..++...++..+. .-..+.+++.+++..+..
T Consensus 274 I~~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t 342 (355)
T 3tjz_B 274 IVNLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT 342 (355)
T ss_dssp HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred HHhccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence 99986522221 1 23456677788888 8899999999999998876664432 334466778888877776
Q ss_pred HHHHHHHH
Q 011316 346 EAAWAISN 353 (488)
Q Consensus 346 ~a~~aL~~ 353 (488)
.|+.+|..
T Consensus 343 ~Aittllk 350 (355)
T 3tjz_B 343 LAITTLLK 350 (355)
T ss_dssp --------
T ss_pred HHHHHhhh
Confidence 66666544
No 66
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.12 E-value=1.1e-08 Score=81.96 Aligned_cols=218 Identities=13% Similarity=0.168 Sum_probs=175.1
Q ss_pred hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011316 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193 (488)
Q Consensus 114 ~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~ 193 (488)
+..++..++.+|.++-..++.+|+..+..++...|+..+.+ +..|+.++..+...........+++.++.-.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--- 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--- 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence 44578899999999999999999999999998888754443 4567777777778888788888899888654
Q ss_pred ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316 194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 194 ~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 273 (488)
.....+.+|.+..-.+-++++++.....+|..++..++.... +++.-+..++.+++..-+..|+..++.+....
T Consensus 102 -Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 102 -PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp -HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred -HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 245678888888888889999999999999999988876554 55677889999988888888888888887644
Q ss_pred chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011316 274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 353 (488)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~ 353 (488)
..... -.++.+..+|.+. +.-+|..|.-+|.+++..++..+..+. .-+.-+++.+..++.....+|+.
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 43322 4789999999999 999999999999999998888554333 23555677788899999999988
Q ss_pred hccC
Q 011316 354 ATSG 357 (488)
Q Consensus 354 l~~~ 357 (488)
++.-
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8653
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.11 E-value=7.2e-09 Score=106.23 Aligned_cols=275 Identities=15% Similarity=0.135 Sum_probs=196.1
Q ss_pred ccHHHHHHHhc---CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-------ChhHHHHHHHHHH
Q 011316 30 ESLPAMVAGVW---SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALT 99 (488)
Q Consensus 30 ~~i~~l~~~L~---s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-------~~~v~~~a~~~L~ 99 (488)
+++..|-+.|. ++++.++.-|+..|.-+-++... .++..|...|.+++ .+.++..|+..|+
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45666777776 67889999999999987765421 14567777776543 3678989999999
Q ss_pred HhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHH
Q 011316 100 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 179 (488)
Q Consensus 100 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a 179 (488)
.+..++.. . .+++.|...+.+++..+++.|+.+|+.+..++... .++..|+..+..+.+..+++.+
T Consensus 463 la~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~a 528 (963)
T 4ady_A 463 LAAMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGL 528 (963)
T ss_dssp HHSTTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHH
T ss_pred HHhcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHH
Confidence 98764321 1 24678888888877888889999999875443321 1356677766566678899999
Q ss_pred HHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcc
Q 011316 180 TWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPS 257 (488)
Q Consensus 180 ~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~ 257 (488)
+.+|..+..+. ...++.+++.|. +.++-++..++.+++.-..+..+. ..++.|+..+ .+.+..
T Consensus 529 algLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 529 AVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred HHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence 99999887654 345667777776 468888888888777544433322 2234344333 456778
Q ss_pred hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011316 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~ 337 (488)
+|..|+..|+.+..++++ .++.++.+|.+..++.+|..|+++++.++.+++.. .++..|..+.+
T Consensus 594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~ 657 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHcc
Confidence 999999999998876652 34566665544449999999999999998854421 25677888888
Q ss_pred cCChhHHHHHHHHHHHhccCC
Q 011316 338 NAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 338 ~~~~~v~~~a~~aL~~l~~~~ 358 (488)
+.+..|+..|+.+|+.+....
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHHHHHhcCC
Confidence 899999999999999998654
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.05 E-value=1.5e-08 Score=84.86 Aligned_cols=226 Identities=17% Similarity=0.175 Sum_probs=172.3
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011316 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ 278 (488)
Q Consensus 199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 278 (488)
.+.+..+.++++..|+.++..++.+|..+....++......-..+++.++.++.++++.+...|+.+|..+..+.+-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45777899999999999999999999999977544444444448899999999999999999999999999987654333
Q ss_pred HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316 279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
.+. .+...+..++.++ ++-.+.+|+-.++-+--.+.. .+++..+.+++.+.+..++..++.++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 332 3567788889988 999999999999988432211 126778889998889999999999999998754
Q ss_pred C-HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCC
Q 011316 359 S-NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHD 436 (488)
Q Consensus 359 ~-~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~ 436 (488)
. ++. -.+++.-+-.++++.|+.+++.|+.++..++.+.-... . ...+ .+.......+. -..
T Consensus 182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~---------~-~~~~--~~~~~~v~~l~~~~~ 244 (265)
T 3b2a_A 182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN---------V-KIEL--LKISRIVDGLVYREG 244 (265)
T ss_dssp SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC---------C-HHHH--HHHHHHHHHGGGCSS
T ss_pred CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh---------H-HHHH--HHHHHHHHHHHHhcC
Confidence 2 111 12567778889999999999999999999987743221 1 2222 23355666676 667
Q ss_pred CHHHHHHHHHHHHHh
Q 011316 437 NTEIYEKAVKILETY 451 (488)
Q Consensus 437 ~~~v~~~a~~~l~~~ 451 (488)
.|.++.+|..+.+.+
T Consensus 245 ~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 245 APIIRLKAKKVSDLI 259 (265)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 899999998877654
No 69
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.01 E-value=5.2e-09 Score=107.35 Aligned_cols=220 Identities=15% Similarity=0.122 Sum_probs=155.6
Q ss_pred HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCC-
Q 011316 69 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGD- 146 (488)
Q Consensus 69 ~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~~l~~~- 146 (488)
..+..++| +++.|++++ ++.|..|+++|++++. ++..+..+...+++..++ .+|.+++.++|..|+++|.||+.+
T Consensus 31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 33445555 556789998 8999999999999998 888999999888888765 478889999999999999999864
Q ss_pred CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011316 147 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 226 (488)
Q Consensus 147 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~ 226 (488)
.+.....+.+.|++++|..++. ... ..+........... ......+ ..+...++.+|.+
T Consensus 108 g~d~~~~l~~~~il~~L~~~l~-~~~--------~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~ 166 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIEHAAK-AVL--------ETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGL 166 (684)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHH-HHH--------HHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHH
T ss_pred CchHHHHHHHcChHHHHHHHHH-hhH--------HHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHH
Confidence 4567788889999999999883 211 11222111110000 0001111 2344567778888
Q ss_pred hccCCchhHHHHHHhCCHHHHHHhcCCC---CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh--cccchhhH
Q 011316 227 LSDGTNDKIQAVIEAGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSI 301 (488)
Q Consensus 227 l~~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~~v 301 (488)
++..+.+....+...+.++.++..|.+. ..+++..|+.+|..++..++...+.+.+.+....+..++ ... +...
T Consensus 167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~ 245 (684)
T 4gmo_A 167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPR 245 (684)
T ss_dssp HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTT
T ss_pred HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHH
Confidence 8877777777788888899998888442 357999999999999999998888887765443332222 223 3445
Q ss_pred HHHHHHHHHHHh
Q 011316 302 KKEACWTISNIT 313 (488)
Q Consensus 302 ~~~a~~~L~nl~ 313 (488)
+..+++++.|+.
T Consensus 246 ~~la~giL~Ni~ 257 (684)
T 4gmo_A 246 AVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHh
Confidence 778889998874
No 70
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.93 E-value=1.5e-07 Score=75.50 Aligned_cols=220 Identities=13% Similarity=0.195 Sum_probs=169.1
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhh
Q 011316 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQT 277 (488)
Q Consensus 199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~ 277 (488)
..++..++.+|.++-+.++.+|+..+.+++...++....+ +..|+.+++ ++.-........+++.++..+|+..
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v 105 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV 105 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence 5678889999998889999999999999999888776643 345666654 4455666788899999998888666
Q ss_pred HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011316 278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 357 (488)
. ++++.+..-..-+ ++++|....++|..++..+|.... +++..+..++.+++..=|..|+..++.+..+
T Consensus 106 ~-----~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 106 K-----SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp H-----HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred H-----hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 5 4567777777788 999999999999999998888554 3566788899988887788888888888765
Q ss_pred CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCC
Q 011316 358 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 437 (488)
Q Consensus 358 ~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~ 437 (488)
+ .++. ...++.|..+|.+.|.-++..+.++|.++....++. +..+. +++.+ +++.+
T Consensus 175 ~----~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl------------Rkii~-----~kl~e-~~D~S 230 (253)
T 2db0_A 175 S----FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL------------RKVVI-----KRLEE-LNDTS 230 (253)
T ss_dssp T----HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH------------HHHHH-----HHHHH-CCCSC
T ss_pred C----cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH------------HHHHH-----HHHHH-hcCcH
Confidence 4 2232 247999999999999999999999999999887753 33332 33444 46677
Q ss_pred HHHHHHHHHHHHHhcCCCCCC
Q 011316 438 TEIYEKAVKILETYWVEEDED 458 (488)
Q Consensus 438 ~~v~~~a~~~l~~~~~~~~~~ 458 (488)
..|+.+...-+.++.-.|.++
T Consensus 231 ~lv~~~V~egL~rl~l~e~~~ 251 (253)
T 2db0_A 231 SLVNKTVKEGISRLLLLEGHS 251 (253)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 889988888888876655543
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.90 E-value=1.3e-08 Score=94.02 Aligned_cols=242 Identities=14% Similarity=0.095 Sum_probs=139.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR 110 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 110 (488)
.+..+.+.++++++-+|-.|++.|.++... +..+ .+.+.+.+.|.+.+ +.+|..|+.+...+....|+..+
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~-----~l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v~ 175 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQ-----AIERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVVK 175 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHH-----HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHHH
Confidence 367889999999999999999999998653 2233 34567888899999 99999999999999987777543
Q ss_pred HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHHHHHHHHHHhhc
Q 011316 111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCR 188 (488)
Q Consensus 111 ~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~v~~~a~~~L~~l~~ 188 (488)
++++.+..++.+.++.++.+|+.+|..+...+.. .+..++..+.++. ++-.+...+..+..++.
T Consensus 176 -----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~ 241 (355)
T 3tjz_B 176 -----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLE 241 (355)
T ss_dssp -----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--
T ss_pred -----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcc
Confidence 6789999999999999999999999999875432 3445555553321 34444444444434333
Q ss_pred CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011316 189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~ 268 (488)
.+ ........++.+...+++.++.|...|++++..+...... .. ..++..+..++.++++.+|..|+..|..
T Consensus 242 ~d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~ 313 (355)
T 3tjz_B 242 DE---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNK 313 (355)
T ss_dssp ------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred cc---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 32 1123356777888888999999999999999998653321 11 2456777778888999999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
++...+.... ..-.-+..+++++ +..+...|..+|
T Consensus 314 l~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittl 348 (355)
T 3tjz_B 314 VAMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTL 348 (355)
T ss_dssp -----------------------------------------
T ss_pred HHHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHh
Confidence 9987765443 2334567778777 766666655544
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.89 E-value=1.3e-07 Score=79.19 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=153.5
Q ss_pred hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011316 28 QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE 107 (488)
Q Consensus 28 ~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~ 107 (488)
.-+.+..+..+|..+|+.++.+++.+|.++++.. +...+...-..+++.+++++.+.+ +.+...|++|+..+..+.|-
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCB
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCC
Confidence 3467888999999999999999999999999875 344555555678999999999999 99999999999999997665
Q ss_pred hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
..+.+.. +..++...+.++++-++..++..++.+---.+. .. ++..+.+++ .+.|..++..++.++.+++
T Consensus 109 ~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~--~~-----V~~~l~sLl-~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 109 GSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS--KL-----VRTYINELV-VSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp CHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--HH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHG
T ss_pred CHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--HH-----HHHHHHHHH-hCCChhHHHHHHHHHHHhh
Confidence 5554443 468899999999999999999999999322221 12 356778888 8999999999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
...... .....++.-+-.+++++|+.++..|+.++-.+....
T Consensus 179 ~~S~D~--~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 179 NSSADS--GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp GGCSSC--CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cccCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 865222 234456667788999999999999999999988663
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.86 E-value=6.1e-07 Score=92.22 Aligned_cols=270 Identities=13% Similarity=0.131 Sum_probs=186.5
Q ss_pred CHHHHHHhhc---CCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC--------HHHHHHHHHHHhh
Q 011316 74 VVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--------DDVREQAVWALGN 142 (488)
Q Consensus 74 ~i~~L~~lL~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~--------~~~~~~a~~~L~~ 142 (488)
++..|-+.|. +++ +.++..|+.+|+.+..+... .++..|...+.+++ +.++..|+..|+.
T Consensus 393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4666666776 445 88999999999999884432 13677777776544 6788899999998
Q ss_pred hhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHHH
Q 011316 143 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDAC 221 (488)
Q Consensus 143 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~v~~~al 221 (488)
+..++.. +. ++..|...+ .+.+..++..++.+|+.+..+..+ ..++..|+..+ .+.+..++..+.
T Consensus 464 a~~GS~~--ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 464 AAMGSAN--IE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp HSTTCCC--HH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhcCCCC--HH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHH
Confidence 7655421 11 355677777 444455667888888876443211 23455555554 355788999999
Q ss_pred HHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011316 222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 300 (488)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~ 300 (488)
..|+.+....++.. +.+++.|. +.++.+|..++.+++.-..+.... ..++.|+..+.+..+..
T Consensus 530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence 99998876665443 44444443 467889999888887655544322 23455555554443788
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc
Q 011316 301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 379 (488)
Q Consensus 301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll 379 (488)
+|+.|+.+|+.+..++++ .++.++..+ ++.++.+|..|+.+|+.+....... .+++.|..+.
T Consensus 594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~ 656 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence 999999999998876543 466666644 4569999999999999997543211 2466777888
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 011316 380 NCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 380 ~~~~~~v~~~al~~L~~l~~ 399 (488)
++++..|+..|+.+|..+..
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHST
T ss_pred cCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999987753
No 74
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.86 E-value=1e-06 Score=83.19 Aligned_cols=323 Identities=12% Similarity=0.133 Sum_probs=197.4
Q ss_pred hCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc---hhHHHHHhcCChH-HHHHHhcccccHhHHHHHHHHHHHhhc
Q 011316 114 DHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALM-PLLAQFNEHAKLSMLRNATWTLSNFCR 188 (488)
Q Consensus 114 ~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~-~l~~~l~~~~~~~v~~~a~~~L~~l~~ 188 (488)
+......++.+|.. .+.++.+..+..+..+...++ .....+.+..... .+........+.-....++.++..++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 34567888898875 789999999999999988776 3333333332221 233322233444455666666666654
Q ss_pred CCCCCChhhhhchHH--HHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHh--CCHHHHHHhcC----CC-----
Q 011316 189 GKPQPLFEQTRPALP--ALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLR----HP----- 254 (488)
Q Consensus 189 ~~~~~~~~~~~~~~~--~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~----~~----- 254 (488)
..+. .......++. .+...+++. +...+..++.++..+...+..+ ..+.+. ..++.++.++. +.
T Consensus 155 ~~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R-~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 155 NGLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYR-DVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHH-HHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred cCCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHH-HHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 4322 2233344444 455556553 4555667888888888765433 445443 23555544322 11
Q ss_pred --------CcchHhHHHHHHhHhhcCCchhhHHHhhCCCh--HHHHHHhcccchhhHHHHHHHHHHHHhcCCH----HHH
Q 011316 255 --------SPSVLIPALRTVGNIVTGDDMQTQCIINHQAL--PCLLDLLTQNYKKSIKKEACWTISNITAGNV----NQI 320 (488)
Q Consensus 255 --------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~ 320 (488)
..+++..++.|++.++.. +.....+...++. ..++.+++....+++-+-++.++.|+....+ ...
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 245678899999999884 4455555555543 5667777776578999999999999998542 222
Q ss_pred HH-HHHcCChHHHHHHHhcC---ChhHHHHHHHHHHHhcc---CCC--HHHHHH----------------HH--------
Q 011316 321 QA-IIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATS---GGS--NEQIKF----------------LV-------- 367 (488)
Q Consensus 321 ~~-l~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~~l~~---~~~--~~~~~~----------------l~-------- 367 (488)
.. ++..++ +.++..|... |+++....-.....+-. .-+ .++... +.
T Consensus 312 ~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 312 KQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 32 333344 4455666553 66554332222211110 000 011111 11
Q ss_pred H--CCChHHHHhhcCC----------CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC
Q 011316 368 S--QGCIKPLCDLLNC----------PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH 435 (488)
Q Consensus 368 ~--~~~~~~L~~ll~~----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~ 435 (488)
+ -.+++.|.++|++ .|+.+...|+.=++.+++.-+.. +..+.+.|+.+.+.+|++|
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~g------------r~i~~~lg~K~~VM~Lm~h 458 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES------------IDVLDKTGGKADIMELLNH 458 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH------------HHHHHHHSHHHHHHHHTSC
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcch------------hHHHHHcCcHHHHHHHhcC
Confidence 1 1346788888873 36777888888888888776643 7788899999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 011316 436 DNTEIYEKAVKILETYW 452 (488)
Q Consensus 436 ~~~~v~~~a~~~l~~~~ 452 (488)
+|++|+..|..++.++.
T Consensus 459 ~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 459 SDSRVKYEALKATQAII 475 (480)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999988763
No 75
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=2.5e-08 Score=88.66 Aligned_cols=187 Identities=14% Similarity=0.218 Sum_probs=144.2
Q ss_pred HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCCchhHHHHH
Q 011316 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI 239 (488)
Q Consensus 161 ~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 239 (488)
+.+.+.+ .+.+...|..++..|..+....+.........+++.+...+. +.+..++..++.+++.++..-........
T Consensus 18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3466777 778899999999999999876322111223577888999994 88999999999999999965433333333
Q ss_pred HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHH
Q 011316 240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVN 318 (488)
Q Consensus 240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~ 318 (488)
. .+++.++..+.++++.+|..+..++..++.... .. .+++.+...+++. ++.+|..++..|..+... .++
T Consensus 97 ~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence 3 678999999999999999999999999987433 11 3677888999988 999999999999997653 233
Q ss_pred H-HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011316 319 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358 (488)
Q Consensus 319 ~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 358 (488)
. ....+. .++|.|..++.+.++++|..|..+++.++..-
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM 207 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 1 122222 48999999999999999999999999998543
No 76
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.84 E-value=1.6e-08 Score=103.70 Aligned_cols=196 Identities=13% Similarity=0.071 Sum_probs=147.4
Q ss_pred chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH-HHhcCCCCcchHhHHHHHHhHhhcCC-chhh
Q 011316 200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL-VELLRHPSPSVLIPALRTVGNIVTGD-DMQT 277 (488)
Q Consensus 200 ~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~ 277 (488)
.++| +++.|+++++..+..|+++|.+++.. +...+.+...+++..+ ..+|.+++.++|..|+++|.||+... ...+
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3445 55678999999999999999999974 4455667777888765 56788899999999999999999753 4567
Q ss_pred HHHhhCCChHHHHHHhcccch--------------------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011316 278 QCIINHQALPCLLDLLTQNYK--------------------KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 278 ~~~~~~~~~~~L~~lL~~~~~--------------------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~ 337 (488)
..++..++++.|..+++.... ..+...++.+|.+++.++.+....+...+.++.|+..+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 778899999999998854200 123345778888998887888888888899999999886
Q ss_pred cC---ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHH---HhhcCCCCHHHHHHHHHHHHHHHH
Q 011316 338 NA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPL---CDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 338 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L---~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
+. ..+++..|+.+|.+++... .+....+.+.+....+ ..+.++.+ ..+..+++.|.+++.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn-~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDN-LKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFT 258 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccC-HHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhh
Confidence 53 4579999999999998864 5667777776654333 22223333 345667788888864
No 77
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.77 E-value=1.9e-08 Score=89.42 Aligned_cols=186 Identities=14% Similarity=0.185 Sum_probs=140.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011316 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198 (488)
Q Consensus 119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 198 (488)
+.+...+.+.+...|..++..|..++...+....... ...++.+...+.++.+..++..++.++..++..-...-....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4577788899999999999999999765322110000 123555666663378899999999999999965422223455
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC-ch-h
Q 011316 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DM-Q 276 (488)
Q Consensus 199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~-~ 276 (488)
..++|.++..+.+.+..++..+..++..++.... .. .+++.+...+.+.++.+|..++..|+.+.... +. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 7789999999999999999999999999987543 12 46788889999999999999999999966543 32 1
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
....+. .+++.+...+.++ ++.+|..|..+++.++.
T Consensus 170 ~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 170 NKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 222333 6889999999988 99999999999999986
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.3e-07 Score=83.96 Aligned_cols=189 Identities=13% Similarity=0.186 Sum_probs=140.2
Q ss_pred HHHhhcCCCChhHHHHHHHHHHH-hcCCCchhhHHHHh-CCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCCC--chhH-
Q 011316 78 FIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVID-HGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDS--PKCR- 151 (488)
Q Consensus 78 L~~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~--~~~~- 151 (488)
+.+.+++.+ ...|..|+..|.. ++.+.++....-.+ ..++..|.+.+ .+.+..++..|+.+++.++.+- +.+.
T Consensus 21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 455678888 6889999999999 87644432200001 13467788888 6889999999999999998432 2232
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
..... .++.++..+ .+....++..+..++..++...+. .... ...+++.+...+++.++.++..++.+|..++.
T Consensus 100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 23222 578888888 667788999999999998875422 2222 56789999999999999999999999999986
Q ss_pred CCc---hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 230 GTN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 230 ~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
... ......+...+++.+.+++.+.++.+|..|..+++.++.
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 544 222233424889999999999999999999999999875
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.2e-07 Score=84.15 Aligned_cols=191 Identities=10% Similarity=0.085 Sum_probs=141.3
Q ss_pred HHHHhcccccHhHHHHHHHHHHH-hhcCCCCCC--hhhhhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc-hhHH-
Q 011316 163 LLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL--FEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ- 236 (488)
Q Consensus 163 l~~~l~~~~~~~v~~~a~~~L~~-l~~~~~~~~--~~~~~~~~~~L~~ll-~~~~~~v~~~al~~L~~l~~~~~-~~~~- 236 (488)
+...+ .+.+..-|..++..|.. ++.+.+... ......++..+.+.+ ++.+..++..++.+++.++..-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34455 67788899999999999 876532222 222346788888999 68899999999999999985432 2222
Q ss_pred HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011316 237 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 316 (488)
Q Consensus 237 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 316 (488)
.... .+++.++..+.+..+.++..+..++..++...+.....-.-..+++.+...|+++ ++.+|..++.+|..++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 2222 4789999999998899999999988888874422111000013677888999999 9999999999999998732
Q ss_pred H---HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 317 V---NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 317 ~---~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
. ......+...++|.|..++.+.+.+||..|..++..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 444444424699999999999999999999999999874
No 80
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.59 E-value=1.5e-05 Score=85.48 Aligned_cols=345 Identities=9% Similarity=0.030 Sum_probs=198.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC------ch
Q 011316 34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT------SE 107 (488)
Q Consensus 34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~------~~ 107 (488)
.++..+.+++..+|...+.++..++..+-... ..+.++.|++.+++++ +..+..++.++..++... ++
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~-----Wp~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~ 162 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSDFPDR-----WPTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE 162 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCccc-----hhHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence 46677766678999999999999887541111 2568899999998887 788899999999998722 12
Q ss_pred hhHHHH--hCCCHHHHHH-------hhCCCCH---------HHHHHHHHHHhhhhC-CCchhHHHHHhcCChHHHHHHhc
Q 011316 108 NTRVVI--DHGAVPIFVR-------LLSSPTD---------DVREQAVWALGNVAG-DSPKCRDLVLSNGALMPLLAQFN 168 (488)
Q Consensus 108 ~~~~~~--~~g~i~~L~~-------lL~~~~~---------~~~~~a~~~L~~l~~-~~~~~~~~~~~~~~i~~l~~~l~ 168 (488)
.+..+. -....+.++. .+.+... ++...++.++.++.. +.+..-..-+ ...++.+.+.+.
T Consensus 163 ~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~ 241 (960)
T 1wa5_C 163 LFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNI-QVGMGIFHKYLS 241 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTH-HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH-HHHHHHHHHHHc
Confidence 222110 0122333333 2443211 233346666666543 2232111000 012233344442
Q ss_pred cc-----cc---------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----cCChhHHHHHHHHHHHhcc
Q 011316 169 EH-----AK---------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-----SNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 169 ~~-----~~---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-----~~~~~v~~~al~~L~~l~~ 229 (488)
.. .+ ..++..++.++..+....+..-......+++.+...+. ..+..++..++..+..++.
T Consensus 242 ~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~ 321 (960)
T 1wa5_C 242 YSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTR 321 (960)
T ss_dssp CCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhC
Confidence 10 11 24677888888887754422111234456666666664 2357888999999988875
Q ss_pred CCchh--HH--HHHHhCCH-HHHHHhcC-----------------------CCCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011316 230 GTNDK--IQ--AVIEAGVC-PRLVELLR-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQCII 281 (488)
Q Consensus 230 ~~~~~--~~--~~~~~~~l-~~L~~lL~-----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 281 (488)
..... .+ ..+. .++ +.++..+. +.....|..|..+|..++...+. .++
T Consensus 322 ~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v~ 397 (960)
T 1wa5_C 322 IPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LVT 397 (960)
T ss_dssp SHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HHH
T ss_pred cHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hHH
Confidence 43211 00 1111 122 22222221 11125677888888888775442 121
Q ss_pred hCCChHHHHHHhc------ccchhhHHHHHHHHHHHHhcCC---H---H------HHHHHHHcCChHHHHHHHhcC---C
Q 011316 282 NHQALPCLLDLLT------QNYKKSIKKEACWTISNITAGN---V---N------QIQAIIEAGIIGPLVNLLLNA---E 340 (488)
Q Consensus 282 ~~~~~~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~---~---~------~~~~l~~~~~l~~L~~ll~~~---~ 340 (488)
. .+++.+...+. +. ++..|..|+.+++.++.+. . . ....++..-++| .+.++ +
T Consensus 398 ~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~ 471 (960)
T 1wa5_C 398 N-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPH 471 (960)
T ss_dssp H-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSC
T ss_pred H-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCC
Confidence 1 23445555555 44 7789999999999997531 1 0 122222212333 34555 7
Q ss_pred hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 341 FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 341 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
+.+|..|+|+++.++..-.++.... +++.+++.+.++++.|+..|+.+|.+++..
T Consensus 472 p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 472 IILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred ceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 8899999999999987654443333 577888888888899999999999999864
No 81
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.53 E-value=4.9e-05 Score=81.76 Aligned_cols=396 Identities=10% Similarity=0.066 Sum_probs=206.2
Q ss_pred CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHh-------hcCCCC--hhHHHHHHHHHHHhcCCCchhh---
Q 011316 42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRDDF--PQLQFEAAWALTNIASGTSENT--- 109 (488)
Q Consensus 42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l-------L~~~~~--~~v~~~a~~~L~~l~~~~~~~~--- 109 (488)
++++.+..|+.++..++...........+. ..++.++.+ +.+.+. ++.....++.+..++......-
T Consensus 256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 334 (971)
T 2x1g_F 256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG 334 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999987532111111111 123333332 233331 2666667777777764222110
Q ss_pred ---------HHHHhCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCC---------CchhHHHHHh--cCChHHHH
Q 011316 110 ---------RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD---------SPKCRDLVLS--NGALMPLL 164 (488)
Q Consensus 110 ---------~~~~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~~l~~~---------~~~~~~~~~~--~~~i~~l~ 164 (488)
..+. ..++.++.+... .++++...+++.+..++.. .+........ ...++.++
T Consensus 335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 412 (971)
T 2x1g_F 335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV 412 (971)
T ss_dssp HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1111 345566665533 4788889999988887541 1111111111 12344444
Q ss_pred HHhccccc--------------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc-----CChhHHHHHHHHHH
Q 011316 165 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDDEVLTDACWALS 225 (488)
Q Consensus 165 ~~l~~~~~--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~v~~~al~~L~ 225 (488)
..+...++ ...|..+..++..++...+ ......+++.+...+.+ .++..++.++.+++
T Consensus 413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~ 489 (971)
T 2x1g_F 413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ 489 (971)
T ss_dssp HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 44421111 1355666777777765432 22333444555555544 57889999999999
Q ss_pred HhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHH
Q 011316 226 YLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 304 (488)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~ 304 (488)
.++..........+. .+++.+..+.. +.++.++..++++++.++..-....+ .+. .+++.++..|+ +.++..
T Consensus 490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~-~vl~~l~~~l~----~~v~~~ 562 (971)
T 2x1g_F 490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIP-PAINLLVRGLN----SSMSAQ 562 (971)
T ss_dssp HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHHH----SSCHHH
T ss_pred HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHhC----hHHHHH
Confidence 998765433221111 23332222221 34788999999999998863221111 111 34555666552 578999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCC-HHHHHHHHH--CCChHHHHhhc
Q 011316 305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVS--QGCIKPLCDLL 379 (488)
Q Consensus 305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~--~~~~~~L~~ll 379 (488)
|++++.+++..........++ +++..+..++..+ +.+.+..+..+++.++.... .+...++.. ..++..+.+++
T Consensus 563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~ 641 (971)
T 2x1g_F 563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC 641 (971)
T ss_dssp HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999755554444443 4777788888874 57888999999999876432 233333222 12333333444
Q ss_pred CCC--CHHHHHH---HHHHHHHHHHhhhhh-hccCCCC-ccchHHHHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHH
Q 011316 380 NCP--DPRIVTV---CLEGLENILKAGEAE-KNMGNTG-GVNLFAQAIDDAEGLEKIENLQSH--DNTEIYEKAVKILET 450 (488)
Q Consensus 380 ~~~--~~~v~~~---al~~L~~l~~~~~~~-~~~~~~~-~~~~~~~~l~~~g~~~~l~~l~~~--~~~~v~~~a~~~l~~ 450 (488)
+.. +++.+.. ++..|..++..-... ....+.. ....+...+ ...++.+..++.. .+.++.+.+..++.+
T Consensus 642 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~ 719 (971)
T 2x1g_F 642 QADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSAMKH 719 (971)
T ss_dssp TC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 433 3323333 444444444321110 0000000 001122322 2346666666432 467898998888887
Q ss_pred hcC
Q 011316 451 YWV 453 (488)
Q Consensus 451 ~~~ 453 (488)
+..
T Consensus 720 ~~~ 722 (971)
T 2x1g_F 720 AIT 722 (971)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.53 E-value=1.6e-05 Score=85.37 Aligned_cols=389 Identities=10% Similarity=0.052 Sum_probs=218.9
Q ss_pred ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCC---------CccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHH
Q 011316 30 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIER---------SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWAL 98 (488)
Q Consensus 30 ~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L 98 (488)
+....++..+.+ .+..+|..|+..|.+.+...- ++..+..++. .++..+.++. +.+|..++.++
T Consensus 35 ~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~i 109 (960)
T 1wa5_C 35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEAI 109 (960)
T ss_dssp THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHHH
Confidence 455567777754 467999999999999876421 1122333343 3444444456 79999999999
Q ss_pred HHhcCC-CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc------hhHHHHH--hcCChHHHHHH---
Q 011316 99 TNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------KCRDLVL--SNGALMPLLAQ--- 166 (488)
Q Consensus 99 ~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~--~~~~i~~l~~~--- 166 (488)
+.++.. .|+.. .++++.|+..+.++++..+..++.++..++.... +.+..+. -....++++.+
T Consensus 110 a~ia~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~ 184 (960)
T 1wa5_C 110 SSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKT 184 (960)
T ss_dssp HHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999872 12111 3578999999988888899999999999986321 1111110 01123333332
Q ss_pred ----hcccc-c-------HhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccC------C---------hhHHH
Q 011316 167 ----FNEHA-K-------LSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN------D---------DEVLT 218 (488)
Q Consensus 167 ----l~~~~-~-------~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~------~---------~~v~~ 218 (488)
+.... + ..+...++.++..+.... +..........++.+..++... + ..++.
T Consensus 185 ~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~ 264 (960)
T 1wa5_C 185 VDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKS 264 (960)
T ss_dssp HHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHH
Confidence 32211 1 123334566666655432 2111112244555556665421 1 24677
Q ss_pred HHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-----CCCcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHH----
Q 011316 219 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPC---- 288 (488)
Q Consensus 219 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~---- 288 (488)
.++.++..+....++.....+. .+++.....+. ..++.++..++..+..++.... .. .++. ...++.
T Consensus 265 ~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~-~~~~~~~~l~~li~~ 341 (960)
T 1wa5_C 265 SIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YF-EIFNNESAMNNITEQ 341 (960)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HH-GGGCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HH-HHHcCchHHHHHHHH
Confidence 8888888887655443332222 34555555553 2456788888888888775322 11 1111 122222
Q ss_pred -HHHHhcc----------------------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------cC
Q 011316 289 -LLDLLTQ----------------------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------NA 339 (488)
Q Consensus 289 -L~~lL~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~------~~ 339 (488)
++..+.- ......|..|..+|..++...++.. +. .+++.+.+.+. +.
T Consensus 342 ~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~~~ 417 (960)
T 1wa5_C 342 IILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDPSK 417 (960)
T ss_dssp THHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC----
T ss_pred HhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCcch
Confidence 2233210 1022567788888888877544322 11 13444445555 45
Q ss_pred ChhHHHHHHHHHHHhccCCC-HH----------HHHHHHHCCChHHHHhhcCCC---CHHHHHHHHHHHHHHHHhhhhhh
Q 011316 340 EFEIKKEAAWAISNATSGGS-NE----------QIKFLVSQGCIKPLCDLLNCP---DPRIVTVCLEGLENILKAGEAEK 405 (488)
Q Consensus 340 ~~~v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~ 405 (488)
++..|+.|+.+++.++.++. .+ ....+...-+++ .+.++ ++.+|..++++++.+...-.
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~--- 490 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT--- 490 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC---
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC---
Confidence 77899999999999975421 00 111111111222 23444 78999999999998865421
Q ss_pred ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011316 406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
.+.+. ..++.+...+.++++.|+..|...+.++.+..
T Consensus 491 -----------~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 491 -----------KAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp -----------HHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred -----------HHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence 11122 12455666667778999999999999988753
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.52 E-value=1e-05 Score=84.26 Aligned_cols=304 Identities=13% Similarity=0.144 Sum_probs=210.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc--h
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS--E 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~--~ 107 (488)
..+..+++.+...+..-+..++..+..+..+...... +..+++..+.+.+.+.. .. +.|+.++..++.... .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHD---VPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSS---CCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccccc---cchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence 4455677777765566667888888887765411111 11267888888888876 23 899999999996331 1
Q ss_pred hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011316 108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~ 187 (488)
..+.++ -+.++.++..+.+....+|..|-.++..++..-+...- ...++.++..+.....-..+..|+.++..++
T Consensus 88 ~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~ 162 (986)
T 2iw3_A 88 SVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMV 162 (986)
T ss_dssp TTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred Ccccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 222222 25789999998888899999988888877644332211 2357888888854556788999999999999
Q ss_pred cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCch-hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011316 188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND-KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L 266 (488)
...+.........++|.+...+.+..++|...+..++..+|..-++ .+. ..+|.|++.+.+++. .-.++..|
T Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~l 235 (986)
T 2iw3_A 163 DAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHLL 235 (986)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHHH
T ss_pred HHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHHh
Confidence 7654444445678889999999999999999999999888853221 112 678999999988743 44455555
Q ss_pred hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcC-ChhH
Q 011316 267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFEI 343 (488)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v 343 (488)
+.-+.-.....- .+ .=.+|.|.+-|... ...+++.++-++.|++. .++.....++- ..+|.+-+....- +|++
T Consensus 236 ~~~tfv~~v~~~-~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 236 GATTFVAEVTPA-TL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEA 311 (986)
T ss_dssp TTCCCCSCCCHH-HH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred hcCeeEeeecch-hH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence 554432211110 00 11356666677777 78899999999999998 66766666654 5888888877664 8999
Q ss_pred HHHHHHHHHHhc
Q 011316 344 KKEAAWAISNAT 355 (488)
Q Consensus 344 ~~~a~~aL~~l~ 355 (488)
|+.|..|+..|.
T Consensus 312 r~~~~~a~~~l~ 323 (986)
T 2iw3_A 312 REVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888888773
No 84
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.52 E-value=5e-05 Score=71.76 Aligned_cols=322 Identities=12% Similarity=0.087 Sum_probs=194.4
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCC--ccHHHHHHcCCH-HHHHHhhcCCCChhHHHHHHHHHHHhcCCC
Q 011316 30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERS--PPINEVIQSGVV-PRFIEFLSRDDFPQLQFEAAWALTNIASGT 105 (488)
Q Consensus 30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~~i-~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~ 105 (488)
.....++++|+ ..+.++....+..+..++...+. .....+.+.... ..+.......++.-....+..++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 34567888887 47788888999999998886520 223333333222 223332223342555566666666665423
Q ss_pred ch---hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcC--ChHHHHHHhccc---------
Q 011316 106 SE---NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEH--------- 170 (488)
Q Consensus 106 ~~---~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~--------- 170 (488)
+. ....+.... -++..|.+ .+...+..++.+|..+.... ..|..+.+.+ .+++++..+...
T Consensus 157 ~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 157 LHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred CccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 22 112222111 34444544 34555677888888887654 4677766543 355565443211
Q ss_pred -------ccHhHHHHHHHHHHHhhcCCCCCChhhhhch--HHHHHHhhcc-CChhHHHHHHHHHHHhccCCch----hHH
Q 011316 171 -------AKLSMLRNATWTLSNFCRGKPQPLFEQTRPA--LPALERLIHS-NDDEVLTDACWALSYLSDGTND----KIQ 236 (488)
Q Consensus 171 -------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~----~~~ 236 (488)
...+++..++.+++-++...+........++ ++.++..++. ..+++..-++.++.|+.....+ ...
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1356788999999999877532222222222 3566666764 5799999999999999976531 112
Q ss_pred -HHHHhCCHHHHHHhcCC---CCcchHhHHHHHHhH-------hh--------------cCCchhhH---------HHh-
Q 011316 237 -AVIEAGVCPRLVELLRH---PSPSVLIPALRTVGN-------IV--------------TGDDMQTQ---------CII- 281 (488)
Q Consensus 237 -~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~~-------l~--------------~~~~~~~~---------~~~- 281 (488)
.++..++++ ++..|.. .++++....-..... ++ .-+|.... .+.
T Consensus 313 ~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e 391 (480)
T 1ho8_A 313 QLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK 391 (480)
T ss_dssp HHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred HHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence 233334544 4444433 344444332111111 11 01121111 111
Q ss_pred -hCCChHHHHHHhcc---------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHH
Q 011316 282 -NHQALPCLLDLLTQ---------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 351 (488)
Q Consensus 282 -~~~~~~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL 351 (488)
+..++..|.++|.+ +.++.+..-||.-++.+++..|..+..+-+.|+=..+++++.++|++||.+|+.|+
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT 471 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 22467889999974 23788888999999999997788887777889999999999999999999999999
Q ss_pred HHhcc
Q 011316 352 SNATS 356 (488)
Q Consensus 352 ~~l~~ 356 (488)
..+..
T Consensus 472 Qklm~ 476 (480)
T 1ho8_A 472 QAIIG 476 (480)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 85
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.52 E-value=3.3e-08 Score=78.52 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=93.7
Q ss_pred cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011316 72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151 (488)
Q Consensus 72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 151 (488)
...++.+..+|++++ +.+|..|+++|+.+.. ..++.|+..++++++.+|..++++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 457888999999988 8999999999887643 126899999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011316 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 227 (488)
Q Consensus 152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l 227 (488)
..++.++..+ ++.++.++..++++|..+.. ...++.|..+++++++.++..+..+|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 2477888888 78899999999999999863 35789999999999999999999988753
No 86
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.46 E-value=3.8e-08 Score=78.17 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=91.6
Q ss_pred hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHH
Q 011316 241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320 (488)
Q Consensus 241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~ 320 (488)
...++.+...|+++++.+|..|+++|+.+.. + .++.|+..|+++ ++.+|..|+++|+++.. +.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~-- 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER-- 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence 3567889999999999999999998887642 1 258899999988 99999999999998853 22
Q ss_pred HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011316 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 396 (488)
Q Consensus 321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~ 396 (488)
.++.|...+.++++.||..|+++|+++.. ++ .++.|..+++++++.++..+..+|.+
T Consensus 74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 47888999999999999999999999852 22 46778888899999999999988764
No 87
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.32 E-value=4e-05 Score=82.41 Aligned_cols=332 Identities=11% Similarity=0.005 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHHhcc-CCCccHHHHHHcCCHHHHHHhhc---------------C-CCChhHHHHHHHHHHHhcCCCc-
Q 011316 45 NIQLDATTQFRKLLSI-ERSPPINEVIQSGVVPRFIEFLS---------------R-DDFPQLQFEAAWALTNIASGTS- 106 (488)
Q Consensus 45 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~~i~~L~~lL~---------------~-~~~~~v~~~a~~~L~~l~~~~~- 106 (488)
.++..++.++...+.. . -+.. .....++.++. |. + ++ ++++..|+.++..+....+
T Consensus 204 ~~~~~al~~l~~~~~~~~-ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~ 277 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIG-YTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC 277 (971)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred hHHHHHHHHHHHHHhhCC-cCcc---ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence 6788888888876652 1 1111 33456666666 41 1 33 7899999999999987322
Q ss_pred hhhHHHHhCCCHHHHHH-------hhCCCC---HHHHHHHHHHHhhhhCCCchh-HHHHH-----hc----CChHHHHHH
Q 011316 107 ENTRVVIDHGAVPIFVR-------LLSSPT---DDVREQAVWALGNVAGDSPKC-RDLVL-----SN----GALMPLLAQ 166 (488)
Q Consensus 107 ~~~~~~~~~g~i~~L~~-------lL~~~~---~~~~~~a~~~L~~l~~~~~~~-~~~~~-----~~----~~i~~l~~~ 166 (488)
..+...+. .+++.++. .+..++ .+.....++.+..++...+.. .+.+. .. ..++.++..
T Consensus 278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~ 356 (971)
T 2x1g_F 278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHC 356 (971)
T ss_dssp GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHH
Confidence 11111111 12233332 123334 367777777777776432211 10000 01 123334443
Q ss_pred hcc----cccHhHHHHHHHHHHHhhcCC--------CCCCh----hhhhchHHHHHHhhccCCh---------------h
Q 011316 167 FNE----HAKLSMLRNATWTLSNFCRGK--------PQPLF----EQTRPALPALERLIHSNDD---------------E 215 (488)
Q Consensus 167 l~~----~~~~~v~~~a~~~L~~l~~~~--------~~~~~----~~~~~~~~~L~~ll~~~~~---------------~ 215 (488)
... ..++.+...+++.+..++... ..... .....+++.++..+.-++. .
T Consensus 357 ~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~ 436 (971)
T 2x1g_F 357 TDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRC 436 (971)
T ss_dssp HHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHH
T ss_pred HcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHH
Confidence 311 246778889998888876511 01111 1223444444444432211 3
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-----CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHH
Q 011316 216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 290 (488)
Q Consensus 216 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~ 290 (488)
.|..+..++..++...++. +.. -+++.+...+.+ .++..++.++.+++.++.+...... ..++.++
T Consensus 437 ~R~~~~~~l~~~~~~~~~~---~l~-~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~ 507 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDY---ILE-ILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLM 507 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTH---HHH-HHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHH---HHH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHH
Confidence 4556666776666543311 111 122233333322 5778999999999999876543221 2233333
Q ss_pred HHh---c--ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011316 291 DLL---T--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 365 (488)
Q Consensus 291 ~lL---~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 365 (488)
.++ . ++ ++.+|..++|+++.++..-....+.+- .+++.++..+. +.|+..|++++.+++.........+
T Consensus 508 ~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~ 581 (971)
T 2x1g_F 508 RVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPY 581 (971)
T ss_dssp HHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333 2 23 788999999999998862011111111 25667777772 7899999999999997665444444
Q ss_pred HHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHh
Q 011316 366 LVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 366 l~~~~~~~~L~~ll~~--~~~~v~~~al~~L~~l~~~ 400 (488)
+- .++..|.+++.. -+.+.+..+++++..++..
T Consensus 582 ~~--~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 582 AD--PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HH--HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HH--HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 32 366677777776 3568888999999998864
No 88
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.31 E-value=0.00011 Score=76.79 Aligned_cols=299 Identities=15% Similarity=0.154 Sum_probs=203.6
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC---chhHHHH
Q 011316 78 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS---PKCRDLV 154 (488)
Q Consensus 78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~ 154 (488)
+.+-+...+ ..-+..++..+..+..+..... ....+++..+.+.+.+.... +.|+.++..++... +.....+
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 444455544 3445667777777765332111 11226778888888774333 89999999998543 2232333
Q ss_pred HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCch
Q 011316 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTND 233 (488)
Q Consensus 155 ~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~ 233 (488)
+ +.++.++... .+....|+..|..++..+...-+ ......++|.++..+.+. .+..+..++.++..++...++
T Consensus 94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVN---PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 3 4677888877 56667899888888888776532 122377899999998765 799999999999999976654
Q ss_pred hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC--CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316 234 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 234 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
....-+ ..++|.+...+.+..+++...|..++..+|.. |.+. ...++.|++.+.++ +. ..+++..|+.
T Consensus 168 ~~~~~~-~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p-~~--~~~~~~~l~~ 237 (986)
T 2iw3_A 168 QVALRM-PELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADP-TE--VPETVHLLGA 237 (986)
T ss_dssp HHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCT-TH--HHHHHHHHTT
T ss_pred HHHHhc-cchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcCh-hh--hHHHHHHhhc
Confidence 433222 37899999999999999999999999888862 2211 15688899999877 33 3344444443
Q ss_pred HhcC---CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC-CCHHHHHHHHHCCChHHHHhhcC-CCCHHH
Q 011316 312 ITAG---NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG-GSNEQIKFLVSQGCIKPLCDLLN-CPDPRI 386 (488)
Q Consensus 312 l~~~---~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~l~~~~~~~~L~~ll~-~~~~~v 386 (488)
-..- ...... =++|.|.+-|......++++++..+.||+.- .++.....++. .+++.+....+ ..+|++
T Consensus 238 ~tfv~~v~~~~l~-----~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 238 TTFVAEVTPATLS-----IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEA 311 (986)
T ss_dssp CCCCSCCCHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred CeeEeeecchhHH-----HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence 2221 122111 1578888888888899999999999999863 34554444443 67777777666 478999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 011316 387 VTVCLEGLENILKAGEA 403 (488)
Q Consensus 387 ~~~al~~L~~l~~~~~~ 403 (488)
|+.+..++..+...+..
T Consensus 312 r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 312 REVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999888766543
No 89
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.27 E-value=0.00028 Score=75.77 Aligned_cols=401 Identities=13% Similarity=0.096 Sum_probs=208.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH----H--cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI----Q--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~--~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
..++.+++.+. +++.+..|+.++..++...........+ . -+..+.+...+...+ .+.....++.+..++.
T Consensus 241 ~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~ 317 (963)
T 2x19_B 241 ALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGE 317 (963)
T ss_dssp HHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Confidence 45666777764 5678889999999998754211111111 1 112222222334445 4555566667766654
Q ss_pred CCchh-------hHHHHhCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCCC--------chhHHHHHh--cCChH
Q 011316 104 GTSEN-------TRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS--------PKCRDLVLS--NGALM 161 (488)
Q Consensus 104 ~~~~~-------~~~~~~~g~i~~L~~lL~~-----~~~~~~~~a~~~L~~l~~~~--------~~~~~~~~~--~~~i~ 161 (488)
..+.. ...+ ..+++.++.+... .++.+...++..+..++... +.....+.. ...++
T Consensus 318 ~~~~~l~~~~~~~~~~--~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 318 NHSRALLDQVEHWQSF--LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp HHHHHHHHCGGGHHHH--HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHcCccchHHH--HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 21111 1111 1345566665553 34556666666666665411 111111110 01233
Q ss_pred HHHHHhccccc--------------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----ccCChhHHHHHHHH
Q 011316 162 PLLAQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWA 223 (488)
Q Consensus 162 ~l~~~l~~~~~--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~v~~~al~~ 223 (488)
.++..+....+ .+.+..+..+|..++...+ ......+.+.+...+ .+.++..++.++.+
T Consensus 396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~a 472 (963)
T 2x19_B 396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYG 472 (963)
T ss_dssp HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34443421111 1224455556655553221 112233444454555 45678899999999
Q ss_pred HHHhccCCchhHHHHHHhCCHHHHHHhc---CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011316 224 LSYLSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS 300 (488)
Q Consensus 224 L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~ 300 (488)
++.++........ ..++.++..+ .++++.++..++++++.++..-.... ..+ ..+++.++..|++ +.
T Consensus 473 l~~i~~~~~~~~~-----~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~ 542 (963)
T 2x19_B 473 FQSIAETIDVNYS-----DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PE 542 (963)
T ss_dssp HHHHTTSCCSSCC-----SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GG
T ss_pred HHHHHhhcCchhh-----HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---ch
Confidence 9999976443211 2233333332 33577899999999999886322211 222 3688888888854 67
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHh
Q 011316 301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCD 377 (488)
Q Consensus 301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~~~~L~~ 377 (488)
++..|++++.+++....+.....+ ..++..|..++..+ +.+.+..+..+++.++...+ .+..+++. .+++.+..
T Consensus 543 V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~--~l~~~l~~ 619 (963)
T 2x19_B 543 LSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH--SLISPYIQ 619 (963)
T ss_dssp GHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHH
Confidence 999999999999864332221111 12455566666653 56788999999999986554 33333322 24444444
Q ss_pred hcC----C-CCHHHHH---HHHHHHHHHHHhhhhhhccC-C----------CCccchHHHHHHhhccHHHHHHhh--cCC
Q 011316 378 LLN----C-PDPRIVT---VCLEGLENILKAGEAEKNMG-N----------TGGVNLFAQAIDDAEGLEKIENLQ--SHD 436 (488)
Q Consensus 378 ll~----~-~~~~v~~---~al~~L~~l~~~~~~~~~~~-~----------~~~~~~~~~~l~~~g~~~~l~~l~--~~~ 436 (488)
.++ . .+++.+. ..+++|..++..-....... . .....++...+.+ .++.+..++ ...
T Consensus 620 ~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 697 (963)
T 2x19_B 620 QLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQ--VFQLIQKVLSKWLN 697 (963)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHH--HHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHH--HHHHHHHHHHhccC
Confidence 332 2 2444443 45556655554422100000 0 0011223333322 244444443 234
Q ss_pred CHHHHHHHHHHHHHhcC
Q 011316 437 NTEIYEKAVKILETYWV 453 (488)
Q Consensus 437 ~~~v~~~a~~~l~~~~~ 453 (488)
+.++.+.+..++.++..
T Consensus 698 ~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 67888888888887654
No 90
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.20 E-value=3e-05 Score=69.57 Aligned_cols=187 Identities=16% Similarity=0.105 Sum_probs=138.2
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011316 202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 281 (488)
Q Consensus 202 ~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 281 (488)
+..+++-|.+.+.+....++.-|..+...+.+....+++.+++..|+......+..++..++.++.++..+....-..+-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 44566667778888899999999996666777888899999999999999999999999999999999885433222223
Q ss_pred hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH----------cCChHHHHHHHh---cCChhHHHHHH
Q 011316 282 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE----------AGIIGPLVNLLL---NAEFEIKKEAA 348 (488)
Q Consensus 282 ~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~----------~~~l~~L~~ll~---~~~~~v~~~a~ 348 (488)
...++..+..++.+. +..|.+.|+..|..++..++.....+.+ ...+..|+.+|+ +.|.+++.+|.
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 567889999999987 8999999999999998744322222221 124889999998 56899999999
Q ss_pred HHHHHhccCCC-HH----HHHHHHHCCChHHHHhhcCCC--CHHHHHH
Q 011316 349 WAISNATSGGS-NE----QIKFLVSQGCIKPLCDLLNCP--DPRIVTV 389 (488)
Q Consensus 349 ~aL~~l~~~~~-~~----~~~~l~~~~~~~~L~~ll~~~--~~~v~~~ 389 (488)
..+..+....+ .+ ....+-+.|.-..+.+.++.. +++++.+
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 88888776543 22 334444556556666666654 5565544
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.19 E-value=0.0005 Score=73.32 Aligned_cols=338 Identities=12% Similarity=0.085 Sum_probs=184.6
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCC-C--c--hhhHHHHh
Q 011316 41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASG-T--S--ENTRVVID 114 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~-~--~--~~~~~~~~ 114 (488)
+.++++...++.++...++ .-....+++.+.++.++ .+|. + ++++..|+.||..+... . + +..+.+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 4567777788888888775 23466778889999999 8885 3 78999999999999872 2 2 12211110
Q ss_pred --CCCHHHH--------------HHhhCCCCHHHHHHHHHHHhhhhC-------CCchhHHHHHhcCChHHHHHHhcccc
Q 011316 115 --HGAVPIF--------------VRLLSSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHA 171 (488)
Q Consensus 115 --~g~i~~L--------------~~lL~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~ 171 (488)
.+.++.+ ...-...+.+..+..++.+..+.. ..+..+..+. .++..++..- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 111122346666666666655532 1122122211 1223344433 445
Q ss_pred cHhHHHHHHHHHHHhhcCCC--CCChhhhh----chHHHHHHhhccCC--------------------hh-HH----HHH
Q 011316 172 KLSMLRNATWTLSNFCRGKP--QPLFEQTR----PALPALERLIHSND--------------------DE-VL----TDA 220 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~~~~--~~~~~~~~----~~~~~L~~ll~~~~--------------------~~-v~----~~a 220 (488)
+.++...++..-..++.... ........ .+++.++.-+.-+. .+ .. ..+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 67777777766555554221 11122223 33444444443222 00 01 122
Q ss_pred HHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc---
Q 011316 221 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--- 295 (488)
Q Consensus 221 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--- 295 (488)
+..+.++.. ++..+ -+++.+.+.+.+ .++..+++++++++.++.+.......-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 437 LVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 222222211 01111 123334444443 578899999999999998655432222222567778887763
Q ss_pred --cchhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHH------
Q 011316 296 --NYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK------ 364 (488)
Q Consensus 296 --~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~------ 364 (488)
+ ...++..++|+++.++. .+++... .++..|++.+..+++.++..|++++.+++..+......
T Consensus 510 ~d~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~ 583 (1023)
T 4hat_C 510 KDN-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1023)
T ss_dssp HHH-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 3 45677788999998876 2343322 25666777777777899999999999999755332210
Q ss_pred --HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 365 --FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 365 --~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
++- .++..+......-+++-+..+.+++..++...+
T Consensus 584 ~p~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 584 EPFIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp SCHHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred chhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 111 123333344444455666677777777776543
No 92
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.19 E-value=0.0025 Score=68.98 Aligned_cols=314 Identities=10% Similarity=0.129 Sum_probs=171.6
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCC--ch--
Q 011316 75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS--PK-- 149 (488)
Q Consensus 75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~~l~~~~--~~-- 149 (488)
++.+.+.+.+..++.++..++.++.+.....+ ...+.+..+++.+. .++ .+++++..|+.+|..+.... +.
T Consensus 196 ~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~ 271 (1049)
T 3m1i_C 196 FKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDND 271 (1049)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchh
Confidence 44445555544447899999999988776333 23355567777777 344 37899999999999998542 21
Q ss_pred -hHHHHHh--cCChHHHHH-----------Hh--cccccHhHHHHHHHHHHHhhcCC------CCCChhhhhchHHHHHH
Q 011316 150 -CRDLVLS--NGALMPLLA-----------QF--NEHAKLSMLRNATWTLSNFCRGK------PQPLFEQTRPALPALER 207 (488)
Q Consensus 150 -~~~~~~~--~~~i~~l~~-----------~l--~~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~L~~ 207 (488)
....+.. .+.+..+.. .. ..+.+.+.....+..+..+.... +.........+++.++.
T Consensus 272 ~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~ 351 (1049)
T 3m1i_C 272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQ 351 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Confidence 1111111 011111111 11 01224444455555554433211 11112233456777777
Q ss_pred hhccCChhHHHHHHHHHHHhcc----CC--chhHHHHHHhCCHHHHHHhcCCCCc----------------------chH
Q 011316 208 LIHSNDDEVLTDACWALSYLSD----GT--NDKIQAVIEAGVCPRLVELLRHPSP----------------------SVL 259 (488)
Q Consensus 208 ll~~~~~~v~~~al~~L~~l~~----~~--~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~v~ 259 (488)
....++..+...++..+..++. .. ......++. .+++.++..+..+++ ..+
T Consensus 352 ~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~ 430 (1049)
T 3m1i_C 352 LSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLY 430 (1049)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHH
Confidence 7777788888888888877765 21 112222222 344555555533210 112
Q ss_pred hHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011316 260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 338 (488)
Q Consensus 260 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~ 338 (488)
..+..+|..++...+..... -+.+.+...+.+ ..++..+..++++++.++....+....-.-..+++.+..+...
T Consensus 431 ~~~~~~L~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~ 506 (1049)
T 3m1i_C 431 KSEREVLVYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVK 506 (1049)
T ss_dssp HHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhh
Confidence 23455555555322211111 123344444442 2278889999999999986422221111111245555554321
Q ss_pred -----CChhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011316 339 -----AEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 339 -----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~ 402 (488)
+++.++..++++++.++..- .++... .+++.+...+.++++.++..|+.++.+++....
T Consensus 507 ~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 507 KRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 23445556889999776431 222222 357778888888899999999999999998654
No 93
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.17 E-value=3.5e-05 Score=69.18 Aligned_cols=188 Identities=13% Similarity=0.142 Sum_probs=141.3
Q ss_pred HHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH-H
Q 011316 247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII-E 325 (488)
Q Consensus 247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~ 325 (488)
++..|.+.+...+..++..|..+..........++..+++..|+++..+. +..++..++.++.++..+ ......++ .
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs~ 200 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHHC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhCC
Confidence 34445556677888999999996666777889999999999999999998 999999999999999886 44454554 3
Q ss_pred cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH----------CCChHHHHhhcC---CCCHHHHHHHHH
Q 011316 326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS----------QGCIKPLCDLLN---CPDPRIVTVCLE 392 (488)
Q Consensus 326 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~----------~~~~~~L~~ll~---~~~~~v~~~al~ 392 (488)
..++..+..++.+.+..|.+.|+..|..++...+. ....+.+ ...++.|+.+|. ..|.+++..++.
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~-~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amt 279 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN-NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVT 279 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc-cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHH
Confidence 45788888999888889999999999999876521 1111111 134888999997 678999999999
Q ss_pred HHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHH
Q 011316 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEK 443 (488)
Q Consensus 393 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~--~~~v~~~ 443 (488)
.+..++...+.... ...+...+++.|.-..+...+.+. +++++++
T Consensus 280 LIN~lL~~apd~d~------~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 280 LINKTLAALPDQDS------FYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHCSSHHH------HHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHhcCCChhH------HHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 99988876553221 112577788888777788877665 6676654
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.08 E-value=0.00053 Score=73.65 Aligned_cols=344 Identities=13% Similarity=0.105 Sum_probs=188.7
Q ss_pred cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhh---CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011316 83 SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL---SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 159 (488)
Q Consensus 83 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 159 (488)
.+.+ ...++.++++++.++.+..+.. ...++.++..+ .++++.++..++++++.++..-....+ . -..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~-l~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-M-INSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-H-HTTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-H-HHHH
Confidence 3445 6789999999999998543311 12344444433 335788999999999999753211111 1 2357
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCc-hhHH
Q 011316 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ 236 (488)
Q Consensus 160 i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~-~~~~ 236 (488)
++.++..+ .+ +.++..|++++.+++......-......++..+..++..+ +...+..++.+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77888887 33 7899999999999997543222234456666777777653 57888999999999886543 3333
Q ss_pred HHHHhCCHHHHHHhc----CCC-CcchHh---HHHHHHhHhhcCCch---------------------hhHHHhhCCChH
Q 011316 237 AVIEAGVCPRLVELL----RHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCIINHQALP 287 (488)
Q Consensus 237 ~~~~~~~l~~L~~lL----~~~-~~~v~~---~a~~~L~~l~~~~~~---------------------~~~~~~~~~~~~ 287 (488)
..++ .+++.+...+ ... +++.+. ..+.+|+.+...-.. ..-..+...+++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 3332 3444443333 222 333333 345555554432110 000111223455
Q ss_pred HHHHHhccc-chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhcc--CCCH---
Q 011316 288 CLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATS--GGSN--- 360 (488)
Q Consensus 288 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~--~~~~--- 360 (488)
.+..++... .+..+.+.++.++..++..-.+....++. .+++.++..+... .+ ..++.+..++. ..+.
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~-~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~~~~~ 761 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVP-QLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHEPAHF 761 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHH-HHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTCTTTC
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHH-HHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCCcchH
Confidence 555555431 15678888888888876421111111111 1222333333332 22 23334444432 1111
Q ss_pred HHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccch-HHHHHHhhccHHHHHHhhcCC
Q 011316 361 EQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL-FAQAIDDAEGLEKIENLQSHD 436 (488)
Q Consensus 361 ~~~~~l~~~~~~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~l~~l~~~~ 436 (488)
.....+.+ ..+.....++. ..+++++......+..++......-.. ... +.. .++.+...+.++
T Consensus 762 ~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~------i~~~~~~~l~~~ 829 (963)
T 2x19_B 762 PPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKA------VFQCAVLALKFP 829 (963)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHH------HHHHHHHHTTCS
T ss_pred HHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHH------HHHHHHHHcCCC
Confidence 11222111 12333333333 246899999999999998776643210 000 122 234455556788
Q ss_pred CHHHHHHHHHHHHHhcCCC
Q 011316 437 NTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 437 ~~~v~~~a~~~l~~~~~~~ 455 (488)
+..+...+...+.++...-
T Consensus 830 ~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 830 EAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp CHHHHHHHHHHHHHHGGGT
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 9999999999999988653
No 95
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.02 E-value=0.0017 Score=69.22 Aligned_cols=315 Identities=10% Similarity=0.122 Sum_probs=176.5
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCC---c-
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS---P- 148 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~~l~~~~---~- 148 (488)
+++.+.++|.++.++++...++.++.....--+ ...+++.+.++.+. .++. +++++..|+.+|..+.... +
T Consensus 195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~ 270 (1023)
T 4hat_C 195 IFKLCFQVLEQGASSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN 270 (1023)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence 444555556554447888899999999887322 45567788999999 8884 5889999999999998632 2
Q ss_pred -hhHHHHHhc--CChHHH-----------HHHh--cccccHhHHHHHHHHHHHhhcCCCC----C-C-hhhhhchHHHHH
Q 011316 149 -KCRDLVLSN--GALMPL-----------LAQF--NEHAKLSMLRNATWTLSNFCRGKPQ----P-L-FEQTRPALPALE 206 (488)
Q Consensus 149 -~~~~~~~~~--~~i~~l-----------~~~l--~~~~~~~v~~~a~~~L~~l~~~~~~----~-~-~~~~~~~~~~L~ 206 (488)
...+.+... +.+..+ -..+ ....|.+.....+..+..+...... . . ......++..++
T Consensus 271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll 350 (1023)
T 4hat_C 271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI 350 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence 122111110 011111 1111 1233566666777777666554311 0 0 111122333555
Q ss_pred HhhccCChhHHHHHHHHHHHhccC---C---chhHHHHHHhCCHHHHHHhcCCCC---------cch------------H
Q 011316 207 RLIHSNDDEVLTDACWALSYLSDG---T---NDKIQAVIEAGVCPRLVELLRHPS---------PSV------------L 259 (488)
Q Consensus 207 ~ll~~~~~~v~~~al~~L~~l~~~---~---~~~~~~~~~~~~l~~L~~lL~~~~---------~~v------------~ 259 (488)
.+-..++.++...++..-..++.. . ......+.. .+++.++..+..+. .+. .
T Consensus 351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~ 429 (1023)
T 4hat_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1023)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence 555567788877777766655531 0 111122222 35555665555433 000 0
Q ss_pred hHHH-HHHhHhhcCCchhhHHHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHH
Q 011316 260 IPAL-RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLL 336 (488)
Q Consensus 260 ~~a~-~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ll 336 (488)
.... .+|..++.-..... ++ -+++.+...+.+ ..++..+..++|+++.++.+- ++....++. .+++.|+.++
T Consensus 430 f~~~Rd~L~~l~~l~~~~~---~~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~ 504 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVIDT---EE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHH---HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhh
Confidence 0011 22222221111100 00 122333333333 237899999999999999853 332333332 3788888888
Q ss_pred hc-----CChhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011316 337 LN-----AEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA 403 (488)
Q Consensus 337 ~~-----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~ 403 (488)
.. +...++..++|+++..+..- .++..+ .++..|.+.+.++++.+...|++++.+++..+..
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 74 23446677889998876532 223222 3577788888778899999999999999986553
No 96
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.01 E-value=0.0016 Score=70.49 Aligned_cols=341 Identities=11% Similarity=0.094 Sum_probs=181.7
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chh----hHHHHh-
Q 011316 41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SEN----TRVVID- 114 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~----~~~~~~- 114 (488)
.+++.++..++.++...++-- ....+.+...++.+.+.+.. + ++++..|+.+|..+.... +.. ...+..
T Consensus 206 ~~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l 280 (1049)
T 3m1i_C 206 GSSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1049)
T ss_dssp CCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence 356788888999988876532 23445567778877743322 4 899999999999998642 111 111110
Q ss_pred -CCCHHHHHH-hh-------------CCCCHHHHHHHHHHHhhhhC-------CCchhHHHHHhcCChHHHHHHhccccc
Q 011316 115 -HGAVPIFVR-LL-------------SSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHAK 172 (488)
Q Consensus 115 -~g~i~~L~~-lL-------------~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~l~~~l~~~~~ 172 (488)
.+++..+.. ++ .+.+.+.....+..+..+.. ..+..+..+ ...++.++... ...+
T Consensus 281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d 357 (1049)
T 3m1i_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE 357 (1049)
T ss_dssp HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence 122222222 11 12344555555555544432 111111111 12344455544 4457
Q ss_pred HhHHHHHHHHHHHhhc----CCCCC--ChhhhhchHHHHHHhhccCC-------------------h---hHHHHHHHHH
Q 011316 173 LSMLRNATWTLSNFCR----GKPQP--LFEQTRPALPALERLIHSND-------------------D---EVLTDACWAL 224 (488)
Q Consensus 173 ~~v~~~a~~~L~~l~~----~~~~~--~~~~~~~~~~~L~~ll~~~~-------------------~---~v~~~al~~L 224 (488)
.++...++..+..++. ..... .......+++.++..+.-++ . ..+..+..+|
T Consensus 358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence 7788888877777776 32111 11233445555555443210 0 1233445555
Q ss_pred HHhccCCchhHHHHHHhCCHHHHHHhcC--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-----ccc
Q 011316 225 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-----QNY 297 (488)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-----~~~ 297 (488)
..++...+.. +.. -+.+.+...+. ..++..++.++++++.++.........-.-..+++.+..+.. .+
T Consensus 438 ~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~- 512 (1049)
T 3m1i_C 438 VYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN- 512 (1049)
T ss_dssp HHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH-
T ss_pred HHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc-
Confidence 5555322211 111 12344444444 356788999999999998654322111111124444444332 13
Q ss_pred hhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH--------HHH
Q 011316 298 KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI--------KFL 366 (488)
Q Consensus 298 ~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l 366 (488)
.+.++..++|+++.++. .+++. +. .+++.++..+.++++.|+..|++++.+++..+..... .++
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~~~~----l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~ 587 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAHWNF----LR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHH----HH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHH----HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 55566679999998875 22222 22 3677788888888899999999999999975433221 111
Q ss_pred HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 367 VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 367 ~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
- .++..+..++..-+.+-.....+++..++...
T Consensus 588 ~--~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 588 Q--TIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp H--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred H--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 1 23344444455445544556667777776543
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.89 E-value=0.00062 Score=72.49 Aligned_cols=417 Identities=12% Similarity=0.113 Sum_probs=207.0
Q ss_pred hhHHHHhhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHH--HHHHcCCHHHHHHhhc
Q 011316 6 IDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN--EVIQSGVVPRFIEFLS 83 (488)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~i~~L~~lL~ 83 (488)
++|+..|---.|...++.. +.++.+.+.|.+ +.++..|+.+|..+++... +... .++..=.+...+..+.
T Consensus 214 L~~l~s~i~wi~~~~i~~~-----~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~-~~~~k~~li~~l~L~~~~~~l~ 285 (980)
T 3ibv_A 214 LQVYAQWVSWININLIVNE-----PCMNLLYSFLQI--EELRCAACETMTEIVNKKM-KPLEKLNLLNILNLNLFFSKSQ 285 (980)
T ss_dssp HHHHHHHTTTSCHHHHHCH-----HHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhhcCHHhhhcc-----hHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCC-ChhhHHHHHHHHhHHHHHHHHh
Confidence 4455544444444444444 677778888765 7999999999999998763 2211 1221101112222222
Q ss_pred --CCCChhHHHHHHHHHHHhcC------CCc-----hhhHHHH--hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC--
Q 011316 84 --RDDFPQLQFEAAWALTNIAS------GTS-----ENTRVVI--DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-- 146 (488)
Q Consensus 84 --~~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~~~--~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~-- 146 (488)
..+ .+.....++.+..++. ..+ +.+.... -.++++.++.++.+++.++...++..+..+...
T Consensus 286 ~~~~D-~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~ 364 (980)
T 3ibv_A 286 EQSTD-PNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLR 364 (980)
T ss_dssp ---CC-HHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHH
T ss_pred ccccc-HHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHH
Confidence 234 6665544444433321 111 1111111 125789999999998888888887777665421
Q ss_pred --------CchhHHHHHhcCChHHHHHHhcccc-----------c----HhHHHHHHHHHHHhhcC-CCCCChhhhh-ch
Q 011316 147 --------SPKCRDLVLSNGALMPLLAQFNEHA-----------K----LSMLRNATWTLSNFCRG-KPQPLFEQTR-PA 201 (488)
Q Consensus 147 --------~~~~~~~~~~~~~i~~l~~~l~~~~-----------~----~~v~~~a~~~L~~l~~~-~~~~~~~~~~-~~ 201 (488)
.+..+..+. ..+..+++.+...+ + .+.|.... .+...+.. .+........ .+
T Consensus 365 ~~~~~~~~~~~~~~~l~--~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i 441 (980)
T 3ibv_A 365 KESSSKELSASLKEFLK--SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAI 441 (980)
T ss_dssp HHTTSCCCCHHHHHHHH--HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHH
T ss_pred hccccccccHHHHHHHH--HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHH
Confidence 111111111 13333444442111 0 12333333 33222211 1111111001 12
Q ss_pred HHHHHHhhc---cCChhHHHHHHHHHHHhccCCchhHHHHH-Hh----CCHHHHHHhcC-----CCCcchHhHHHHHHhH
Q 011316 202 LPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVI-EA----GVCPRLVELLR-----HPSPSVLIPALRTVGN 268 (488)
Q Consensus 202 ~~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~----~~l~~L~~lL~-----~~~~~v~~~a~~~L~~ 268 (488)
.+.+...+. +.++..++.++.+++.+++.-......+. .. .+++.+..++. .+.+.++..++++++.
T Consensus 442 ~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~r 521 (980)
T 3ibv_A 442 TSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVR 521 (980)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 222223332 34688899999999999876432111000 00 13344555544 5678999999999999
Q ss_pred hhcCCchhhHHHhhCCChHHHHHHhc------ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH----Hhc
Q 011316 269 IVTGDDMQTQCIINHQALPCLLDLLT------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL----LLN 338 (488)
Q Consensus 269 l~~~~~~~~~~~~~~~~~~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~l----l~~ 338 (488)
.+..-.. ....++.++..+- ++ +..++..|+.++.+++....... .+.++.++.. +..
T Consensus 522 ys~~~~~------~~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~~~~~~L-----~~~~~~il~~l~~lL~~ 589 (980)
T 3ibv_A 522 YASFFDY------ESAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFVKSIKKQV-----VNYTESSLAMLGDLLNI 589 (980)
T ss_dssp TGGGGGT------CCTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHHHTTTTC-----SSSHHHHHHHTTGGGCC
T ss_pred HHHHHhc------CchhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHHHhhHHh-----hhHHHHHHHHHHHhhcC
Confidence 8874332 2244555555443 45 67899999999999987322211 1223333333 331
Q ss_pred C-----C----------------hhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHH----HHhhcCCC----CHHH-
Q 011316 339 A-----E----------------FEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKP----LCDLLNCP----DPRI- 386 (488)
Q Consensus 339 ~-----~----------------~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~~~~----L~~ll~~~----~~~v- 386 (488)
. + .+-+.....+++.++... +.+......+ .++.+ +...+... +...
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~ 668 (980)
T 3ibv_A 590 SVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIIS 668 (980)
T ss_dssp CCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHH
T ss_pred cCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHH
Confidence 1 0 123455666677666432 2332222222 23333 33333321 2222
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc--CCCHHHHHHHHHHHHHhcCC
Q 011316 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS--HDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 387 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~~ 454 (488)
....+.++.++.+.-.... .+..++...|.+. ++.+...+. ..+..|++++...+.++...
T Consensus 669 i~~~i~al~~lakgf~~~~-----~~~~p~~~~f~~~--~~~il~~l~~~~~~~~irea~~~~~~r~i~~ 731 (980)
T 3ibv_A 669 VYCSLMAIGNFAKGFPARG-----SEEVAWLASFNKA--SDEIFLILDRMGFNEDIRGAVRFTSGRIINV 731 (980)
T ss_dssp HHHHHHHHHHHHHTSCSCC------CCCSHHHHHHHH--HHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhccCCccc-----CCCCcHHHHHHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 2244555666655332111 1112244555433 444544443 45789999999999988764
No 98
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.75 E-value=0.00011 Score=78.19 Aligned_cols=305 Identities=10% Similarity=0.020 Sum_probs=165.7
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC--chhhHHHHhCCCH
Q 011316 41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SENTRVVIDHGAV 118 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i 118 (488)
+.++.++..++.++...++ .-....+++.+.++.+.++|.+ ++++..|+.||..+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 4778888899999999876 3446777778899999999875 789999999999998743 3333333322011
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHhhhhC------CCc-----hhHHH--HHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011316 119 PIFVRLLS--SPTDDVREQAVWALGNVAG------DSP-----KCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWTL 183 (488)
Q Consensus 119 ~~L~~lL~--~~~~~~~~~a~~~L~~l~~------~~~-----~~~~~--~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L 183 (488)
...+..+. .++.++.+..++.+..++. ..+ +.+.. -.-.+.++.++... .+++.++...++..+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 12222222 3677776655555544321 111 10000 01124677777777 455667766666666
Q ss_pred HHhhcCC---CC--CChh----hhhchHHHHHHhhccCC-----h-----------hHHHHHHHHHHHhccCCchhHHHH
Q 011316 184 SNFCRGK---PQ--PLFE----QTRPALPALERLIHSND-----D-----------EVLTDACWALSYLSDGTNDKIQAV 238 (488)
Q Consensus 184 ~~l~~~~---~~--~~~~----~~~~~~~~L~~ll~~~~-----~-----------~v~~~al~~L~~l~~~~~~~~~~~ 238 (488)
..+.... +. .... ....+++.++.-++-++ . +.|......+..++.-.++..-..
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5554321 11 1111 22334444444443210 0 233333322222221121111110
Q ss_pred HHhCCHHHHHHhcC---CCCcchHhHHHHHHhHhhcCCchhhHHHh-h----CCChHHHHHHhc-----ccchhhHHHHH
Q 011316 239 IEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCII-N----HQALPCLLDLLT-----QNYKKSIKKEA 305 (488)
Q Consensus 239 ~~~~~l~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~----~~~~~~L~~lL~-----~~~~~~v~~~a 305 (488)
.-.-+.+.+.+.+. +.++..++.++.+++.++.+-........ . ..+++.+..+++ .+ .+.++..+
T Consensus 437 ~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~~ 515 (980)
T 3ibv_A 437 MYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLLY 515 (980)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHHH
Confidence 00011122223332 23578889999999999876443221110 1 124455555554 44 78999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc------CChhHHHHHHHHHHHhccCCC
Q 011316 306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------AEFEIKKEAAWAISNATSGGS 359 (488)
Q Consensus 306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~ 359 (488)
+++++..+.--.. ....++.++..+-+ ++..|+..|+.++.+++..+.
T Consensus 516 ~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 516 MEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp HHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence 9999998872111 12355555555544 467899999999999987654
No 99
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.63 E-value=0.00075 Score=64.40 Aligned_cols=244 Identities=12% Similarity=0.114 Sum_probs=158.4
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--hhHHHHhCCCHHHHHHhh--CC--------CCHHHHHHHHHHHh
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--NTRVVIDHGAVPIFVRLL--SS--------PTDDVREQAVWALG 141 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~lL--~~--------~~~~~~~~a~~~L~ 141 (488)
+.+.|+.-|-++.| ++|..|+.+|..+...... .+..-.+....-.++..+ .. --..+|+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~W-EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEW-YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcch-hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 45667677778885 9999999999998762221 111001112233333322 11 23689999999999
Q ss_pred hhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHH
Q 011316 142 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC 221 (488)
Q Consensus 142 ~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al 221 (488)
.+ .+-+.- ..++..++..+ ....-+++..++-.|..+ .+--. ...++++.++..|.+.|++|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~DLL~----~Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KEFVE----DKDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GGGCC----CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HHHHH----HHHHHHHHHHhhcCCcccHHHHHHH
Confidence 99 655542 23444555444 555678999999999988 11111 1678899999999999999999999
Q ss_pred HHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchh
Q 011316 222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK 299 (488)
Q Consensus 222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~ 299 (488)
.+|..++ .++... .++..+...|.+-+ ..-....+..|+.++..... .......+|.|.+++.+. -.
T Consensus 321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCC-cH
Confidence 9999999 233333 33444555554422 22344556777777775532 112347899999999999 99
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 011316 300 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 352 (488)
Q Consensus 300 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~ 352 (488)
.||..++.++..+. .....+.+. ..++-..+.+++..+..+..
T Consensus 390 SVR~AVL~TL~tfL--~~~~LRLIF--------QNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EESIDFLVA--------EVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC--CHHHHHHHH--------HHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhhHHHHHH--------HHHHhCCcHHHHHHHHHHHH
Confidence 99999999998887 233222222 24555667888887777774
No 100
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.50 E-value=0.021 Score=51.33 Aligned_cols=243 Identities=9% Similarity=0.085 Sum_probs=169.5
Q ss_pred hchHHHHHHhhccCChhHHHHHHHHHHHhccCCch----hHHHHHH-hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011316 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTND----KIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 273 (488)
Q Consensus 199 ~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 273 (488)
.+.+..++..+..-+-+.+..+..+..++.....+ ..+.+.+ ..++..|+..-. ++++...+-..|..++. .
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir-~ 153 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIR-H 153 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHT-S
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHH-h
Confidence 56788888888888999999999999998865432 2233332 134444444443 45566666666766666 5
Q ss_pred chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc---CChHHHHHHHhcCChhHHHHHHHH
Q 011316 274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWA 350 (488)
Q Consensus 274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~~a~~a 350 (488)
+...+.++....+..+.+.++.+ +.++-..|..++..+..........++.. .++.....++.+++.-+|..++..
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 56777788888888999999999 99999999999998887656666666653 357777888999999999999999
Q ss_pred HHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh--ccH
Q 011316 351 ISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA--EGL 426 (488)
Q Consensus 351 L~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~ 426 (488)
|+.+.... ..-..+++.+..-+..++.+|+++...++..|...+.-++....+.. ++...+... ..+
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~---------~I~~IL~~Nr~kLl 303 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ---------PILDILLKNQAKLI 303 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH---------HHHHHHHHTHHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCCh---------HHHHHHHHHHHHHH
Confidence 99998753 22344555556779999999999999999999988876665433322 256666533 345
Q ss_pred HHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011316 427 EKIENLQSHD--NTEIYEKAVKILETYWVE 454 (488)
Q Consensus 427 ~~l~~l~~~~--~~~v~~~a~~~l~~~~~~ 454 (488)
+-+.++..+. ++...+.-..++..+-.-
T Consensus 304 ~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 304 EFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp HHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence 6666665543 444444444455554443
No 101
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.50 E-value=0.00029 Score=67.16 Aligned_cols=244 Identities=16% Similarity=0.136 Sum_probs=155.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHH-HHHcCCHHHHHHhh---------cCCCChhHHHHHHHHHHH
Q 011316 31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINE-VIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTN 100 (488)
Q Consensus 31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~i~~L~~lL---------~~~~~~~v~~~a~~~L~~ 100 (488)
....|+..|-++.-++|.-|+-.|+.++.......... -.+.+..-.++-+| .+.--..||+.|+++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45678889999999999999999999987542100000 00002222222222 122224699999999999
Q ss_pred hcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011316 101 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180 (488)
Q Consensus 101 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~ 180 (488)
+ ..-++. ..++..++..+..+..++|..++-.|..+. +-... -.++++.++..| .+.|.+|+..|+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL-~D~DDDVRAVAA 320 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLL-SSPDEDIKLLSA 320 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHT-TCSSHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhc-CCcccHHHHHHH
Confidence 9 634433 355666666667889999999999999881 11111 123566777777 777889999999
Q ss_pred HHHHHhhcCCCCCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcch
Q 011316 181 WTLSNFCRGKPQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 258 (488)
Q Consensus 181 ~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v 258 (488)
.+|.-++ .......++..+...|.+.| .......+..|..++..+... ......+|.|..++.+.-++|
T Consensus 321 etLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 321 ELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHH
T ss_pred HHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHH
Confidence 9999888 11335566777777776532 222344455555555433211 111378999999999999999
Q ss_pred HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-HhcccchhhHHHHHHHHH
Q 011316 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~~~~~~~v~~~a~~~L 309 (488)
|.+++.++..+.. . .++..+.+ +|-.+ +++++..+..+-
T Consensus 392 R~AVL~TL~tfL~--~---------~~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 392 RTSILNMVKNLSE--E---------SIDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHHTTTCCC--H---------HHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--h---------hHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 9999999988871 1 12333333 33344 666766655544
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0022 Score=57.73 Aligned_cols=192 Identities=13% Similarity=0.116 Sum_probs=127.6
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHH-HHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN-EVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 106 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~--~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~ 106 (488)
..+| +-+.|.|.+-..|..|+..+.+++......... ... -....+.+.+.+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 3455 668899999999999999999988754222111 111 1234566777888888 8999999999998876221
Q ss_pred -----hhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011316 107 -----ENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180 (488)
Q Consensus 107 -----~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~ 180 (488)
.......-..+++.|+. .+.+..+.++..+..++..++...... .. .++.++..+ .+.++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence 11111122345777775 477888999999998888776432211 11 234455555 677899999999
Q ss_pred HHHHHhhcCC--CCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011316 181 WTLSNFCRGK--PQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG 230 (488)
Q Consensus 181 ~~L~~l~~~~--~~~-~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 230 (488)
..|..+.... ... .......+++.+..++.+.|+.||..+..++..+-..
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 8888876542 111 1223345667788889999999999999999887644
No 103
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.43 E-value=0.0027 Score=55.74 Aligned_cols=177 Identities=15% Similarity=0.099 Sum_probs=119.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHH----HhcccccHhHHHHHHHHHHHhh----cCC
Q 011316 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA----QFNEHAKLSMLRNATWTLSNFC----RGK 190 (488)
Q Consensus 119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~----~l~~~~~~~v~~~a~~~L~~l~----~~~ 190 (488)
+.+...+-+.+..-+..++..|.......+. .+.. .+..+++ .+ .+++..+...++.+|..+. ...
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~-~d~N~~v~~~~L~~L~~l~~~l~~~~ 122 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRF-FETNPAALIKVLELCKVIVELIRDTE 122 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHT-TSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555555666666666666665433321 2211 2222233 22 3567888888887777663 222
Q ss_pred CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011316 191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270 (488)
Q Consensus 191 ~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~ 270 (488)
..........++|.++.-+-++...++..+-.++..+..-.+. ..+++.+...+.+.++.+|..++..++.+.
T Consensus 123 y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 123 TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 2223333467899999999888999999988888776542221 145677888889999999999999999987
Q ss_pred cCCchhhHHHhhCCCh---HHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011316 271 TGDDMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITA 314 (488)
Q Consensus 271 ~~~~~~~~~~~~~~~~---~~L~~lL~~~~~~~v~~~a~~~L~nl~~ 314 (488)
...... ....+ +.+..++.++ +..||..|..++..+-.
T Consensus 196 ~~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 196 TNAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred HhcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 643322 23467 8999999998 99999999999997765
No 104
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0054 Score=55.10 Aligned_cols=189 Identities=11% Similarity=0.107 Sum_probs=126.8
Q ss_pred HHHhcCCCCcchHhHHHHHHhHhhcCCchhhH--HHh--hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC------
Q 011316 247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ--CII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------ 316 (488)
Q Consensus 247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~--~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------ 316 (488)
+-.-|.+.++..|..|+..+..+....+.... ... -....+.+...+.+. +..+...++.++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 56778899999999999999887764332111 111 123456677788888 9999999999999887621
Q ss_pred HHHHHHHHHcCChHHHHHH-HhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011316 317 VNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE 395 (488)
Q Consensus 317 ~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~ 395 (488)
....... -..+++.|+.- +.+....++..+..++..++...... . .+++.+...+++.++.++..++..|.
T Consensus 93 ~~~~~~~-~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~-----~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITL-ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--T-----QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--H-----HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--H-----HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1111122 22367777754 66777889999998888876543211 1 13566777889999999999999999
Q ss_pred HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011316 396 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
.++....... .+ ....+. ..++.+..++++.+++||..|..++-.+|.-
T Consensus 165 ~~l~~fg~~~-------~~-~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 165 ELMAAFGLTN-------VN-VQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHTTTT-------CC-HHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCc-------CC-chhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 9886432111 00 122221 2356678889999999999999999887763
No 105
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.38 E-value=0.045 Score=58.43 Aligned_cols=314 Identities=12% Similarity=0.129 Sum_probs=166.9
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH-HHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHH
Q 011316 76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGDS-PKCRDL 153 (488)
Q Consensus 76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~ 153 (488)
+.+...|+.+.++++...++.++.....--+ ...+++.+.++.+ ..++ .+++++..|+.+|..+.... ++..+.
T Consensus 209 ~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~ 284 (1073)
T 3gjx_A 209 QLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQ 284 (1073)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHH
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHH
Confidence 3334445444448888889999999987432 3567788888888 4666 46889999999999987542 222222
Q ss_pred HHh--cCChHHHHHHh------------cccccHhHHHHHHHHHHHhhcCCC-----C-CChhhhhchHHHHHHhhccCC
Q 011316 154 VLS--NGALMPLLAQF------------NEHAKLSMLRNATWTLSNFCRGKP-----Q-PLFEQTRPALPALERLIHSND 213 (488)
Q Consensus 154 ~~~--~~~i~~l~~~l------------~~~~~~~v~~~a~~~L~~l~~~~~-----~-~~~~~~~~~~~~L~~ll~~~~ 213 (488)
+.. ...+..+-..+ ..+.+++.....+..+..+..... . ........++..++.+-..++
T Consensus 285 ~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d 364 (1073)
T 3gjx_A 285 FETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEE 364 (1073)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCc
Confidence 211 01111111111 122344555556666665544320 0 011122334445555556778
Q ss_pred hhHHHHHHHHHHHhccC----C-----ch------------hHHHHHH---hCCHHHHHHhcCCCCc----------chH
Q 011316 214 DEVLTDACWALSYLSDG----T-----ND------------KIQAVIE---AGVCPRLVELLRHPSP----------SVL 259 (488)
Q Consensus 214 ~~v~~~al~~L~~l~~~----~-----~~------------~~~~~~~---~~~l~~L~~lL~~~~~----------~v~ 259 (488)
.++...++..-..+... . .. ....+.. ..+...++..+..+.+ .+|
T Consensus 365 ~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~r 444 (1073)
T 3gjx_A 365 TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVR 444 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHH
Confidence 88877777665544321 0 00 0111111 0233334444443321 011
Q ss_pred h------------HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcC-CHH-HHHHHH
Q 011316 260 I------------PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAG-NVN-QIQAII 324 (488)
Q Consensus 260 ~------------~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~-~~~-~~~~l~ 324 (488)
+ ..-.++..++.-....... -..+.+.+.+.. ..++.....++|+++.++.. .++ ....+.
T Consensus 445 e~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 445 EFMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp EECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 1 0111222222111111111 122333333332 22688899999999999763 222 222233
Q ss_pred HcCChHHHHHHHhcC---C--hhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011316 325 EAGIIGPLVNLLLNA---E--FEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 325 ~~~~l~~L~~ll~~~---~--~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l 397 (488)
.+++.|+.+...+ + ..++...+++++.....- .++..+ .++..|.+.+.++++.++..|+.++..+
T Consensus 521 --~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i 593 (1073)
T 3gjx_A 521 --TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKI 593 (1073)
T ss_dssp --HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHH
T ss_pred --HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3778888777654 2 234555667887765431 223322 2677888888888999999999999999
Q ss_pred HHhhhhh
Q 011316 398 LKAGEAE 404 (488)
Q Consensus 398 ~~~~~~~ 404 (488)
+..+...
T Consensus 594 ~~~C~~~ 600 (1073)
T 3gjx_A 594 AQKCRRH 600 (1073)
T ss_dssp HHHTGGG
T ss_pred HHHHHHH
Confidence 8877654
No 106
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.33 E-value=0.015 Score=62.11 Aligned_cols=297 Identities=12% Similarity=0.116 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHH-HHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHh--CC
Q 011316 41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF-IEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVID--HG 116 (488)
Q Consensus 41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L-~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~--~g 116 (488)
+.++++...++.++...++ .-....+++.+.++.+ ..+|. + ++++..|+.||..+.... ++..+.+.. ..
T Consensus 218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 4677877788888888765 3346778888899988 47664 3 789999999999988632 332222211 11
Q ss_pred CHHHHHHhh-------------CCCCHHHHHHHHHHHhhhhCCC-------chhHHHHHhcCChHHHHHHhcccccHhHH
Q 011316 117 AVPIFVRLL-------------SSPTDDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHAKLSML 176 (488)
Q Consensus 117 ~i~~L~~lL-------------~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~~~i~~l~~~l~~~~~~~v~ 176 (488)
++..+..++ ...+.+.....++.+..+.... |+.+..+.. ++..++.+- ..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence 122222222 1123455555666666554321 111111111 222333333 45577777
Q ss_pred HHHHHHHHHhhcC----CCC----C-------------ChhhhhchHHHHHH----hhccCCh-----------------
Q 011316 177 RNATWTLSNFCRG----KPQ----P-------------LFEQTRPALPALER----LIHSNDD----------------- 214 (488)
Q Consensus 177 ~~a~~~L~~l~~~----~~~----~-------------~~~~~~~~~~~L~~----ll~~~~~----------------- 214 (488)
..+...-..+... .+. . ......+++..+.. -+..++.
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~ 448 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK 448 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence 7766554444321 110 0 01112233333333 3332210
Q ss_pred --------hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhH-HHhhC
Q 011316 215 --------EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQ-CIINH 283 (488)
Q Consensus 215 --------~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~ 283 (488)
++...++..+.++.. .+... -+.+.+.+.+.. .++...++++++++.++..-..... .++.
T Consensus 449 d~~~~~ly~~mrd~L~~lt~l~~--~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp- 520 (1073)
T 3gjx_A 449 DTDSINLYKNMRETLVYLTHLDY--VDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV- 520 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCH--HHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-
T ss_pred hcchHHHHHHHHHHHHHHhcCCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-
Confidence 112223222222221 11111 123444444443 3578889999999999854432211 2221
Q ss_pred CChHHHHHHhcccc----hhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 284 QALPCLLDLLTQNY----KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 284 ~~~~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.+++.|+.+..++. ...++...+|+++.... .+++.. + .++..|++.+.++++.|+..|+.++..++.
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L----~-~vl~~L~~~m~~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFL----K-TVVNKLFEFMHETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH----H-HHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHH----H-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 45666666664431 23355566789988765 233322 2 257778888888899999999999999987
Q ss_pred CCC
Q 011316 357 GGS 359 (488)
Q Consensus 357 ~~~ 359 (488)
.+.
T Consensus 596 ~C~ 598 (1073)
T 3gjx_A 596 KCR 598 (1073)
T ss_dssp HTG
T ss_pred HHH
Confidence 663
No 107
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.32 E-value=0.001 Score=58.48 Aligned_cols=181 Identities=13% Similarity=0.056 Sum_probs=118.9
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh---hHHH
Q 011316 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ---TQCI 280 (488)
Q Consensus 204 ~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~ 280 (488)
.+...+-+.|.+-+..++..|.......+......++ .+++.+.-.+.+.++.+...++.+|..+...-... ....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 3455555667777777777777655433321111111 12232222334678888888888888875321110 0000
Q ss_pred hhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC
Q 011316 281 INHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS 359 (488)
Q Consensus 281 ~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 359 (488)
-..-++|.|+.-+.++ ...+|..+-.++..+.. .++. .+++.++.-+.+.+..+|..++..+..+.....
T Consensus 129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 0124688999999888 78899888877776654 2222 257778888888999999999999999975322
Q ss_pred HHHHHHHHHCCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 360 NEQIKFLVSQGCI---KPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 360 ~~~~~~l~~~~~~---~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
.. ....+ +.+..++.++|..||..|+.++..+...
T Consensus 200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 22 23468 9999999999999999999999888654
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.32 E-value=0.023 Score=51.05 Aligned_cols=202 Identities=15% Similarity=0.095 Sum_probs=145.1
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch----hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
+.+...+.+..|+..|..-+.+.|..+..+..++.+.... ....+.. -.+.+..++..-.++++-..+...|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 4466678899999999888888999999999999885442 2223332 233333333333345666667777777
Q ss_pred HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC--CChHHHHhhcCCCCHHHHHH
Q 011316 312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ--GCIKPLCDLLNCPDPRIVTV 389 (488)
Q Consensus 312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~~~~L~~ll~~~~~~v~~~ 389 (488)
++.+ ......++..+.+..+.+.++.++.++...|..++..+......-...++... ........++.+++.-.+.+
T Consensus 150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 7765 67777788888899999999999999999999999998776433333333321 34667778999999999999
Q ss_pred HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 011316 390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449 (488)
Q Consensus 390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~ 449 (488)
++..|+.++..-..... ....+.+..-++.+..++.+++..++..|-.+..
T Consensus 229 SlKLLgelLldr~N~~v---------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK 279 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTI---------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK 279 (341)
T ss_dssp HHHHHHHHHHSGGGHHH---------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHH---------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee
Confidence 99999999866444332 3555555666888888889999888877776643
No 109
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=97.12 E-value=0.026 Score=48.36 Aligned_cols=186 Identities=11% Similarity=0.133 Sum_probs=125.0
Q ss_pred ChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHh-------cCCCCc-----chHhHHHHHHhHhhcCCchhhHH
Q 011316 213 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPSP-----SVLIPALRTVGNIVTGDDMQTQC 279 (488)
Q Consensus 213 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------L~~~~~-----~v~~~a~~~L~~l~~~~~~~~~~ 279 (488)
+++.++.|+.-|+.--+..++....+..+ |.+..|++= +..+.- .-...|+..+..++. .++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 45568888777766544444554445544 555555332 222211 112345555566665 5667778
Q ss_pred HhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011316 280 IINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA 354 (488)
Q Consensus 280 ~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l 354 (488)
+++.++.-.+..+|+.. ..+.+|-.+.++++.++. ++++.+..+.+.+++|..++.++.++.-.|.-|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 88989888888888553 146789999999999998 6788999999999999999999999999999999999998
Q ss_pred ccCCCHHHHHHHHHC--------CChHHHH-hhcCCCCHHHHHHHHHHHHHHHHhh
Q 011316 355 TSGGSNEQIKFLVSQ--------GCIKPLC-DLLNCPDPRIVTVCLEGLENILKAG 401 (488)
Q Consensus 355 ~~~~~~~~~~~l~~~--------~~~~~L~-~ll~~~~~~v~~~al~~L~~l~~~~ 401 (488)
.... ....++... .++..++ .+.+++++.+.++++.+..++....
T Consensus 173 L~dd--~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 173 LLDD--TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred hccc--hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 8642 444443321 1222222 3445777888888887777775443
No 110
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.96 E-value=0.00088 Score=58.46 Aligned_cols=90 Identities=20% Similarity=0.159 Sum_probs=53.5
Q ss_pred HHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCC
Q 011316 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA 285 (488)
Q Consensus 206 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 285 (488)
..+++++++.|+..++.. + ..+.+..++.++++.||..+...+ .
T Consensus 152 ~~l~~D~d~~VR~~aa~~---l---------------~~~ll~~ll~D~d~~VR~aaa~~l------------------~ 195 (244)
T 1lrv_A 152 FRFMRDEDRQVRKLVAKR---L---------------PEESLGLMTQDPEPEVRRIVASRL------------------R 195 (244)
T ss_dssp GGTTTCSCHHHHHHHHHH---S---------------CGGGGGGSTTCSSHHHHHHHHHHC------------------C
T ss_pred HHHHcCCCHHHHHHHHHc---C---------------CHHHHHHHHcCCCHHHHHHHHHhC------------------C
Confidence 345556666666666553 1 013344556667777777666542 1
Q ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHH
Q 011316 286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 351 (488)
Q Consensus 286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL 351 (488)
.+.+..++.++ ++.||..++..+. .+.|..+ .++++.|+..+...|
T Consensus 196 ~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 196 GDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 23466667777 7788877776643 2444444 777888888776554
No 111
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.95 E-value=0.00041 Score=60.59 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=62.3
Q ss_pred HhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011316 166 QFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 245 (488)
Q Consensus 166 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~ 245 (488)
.+.+++++.|+..++.. +. .+.+..+++++++.|+..+...+ ..+
T Consensus 153 ~l~~D~d~~VR~~aa~~---l~--------------~~ll~~ll~D~d~~VR~aaa~~l------------------~~~ 197 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR---LP--------------EESLGLMTQDPEPEVRRIVASRL------------------RGD 197 (244)
T ss_dssp GTTTCSCHHHHHHHHHH---SC--------------GGGGGGSTTCSSHHHHHHHHHHC------------------CGG
T ss_pred HHHcCCCHHHHHHHHHc---CC--------------HHHHHHHHcCCCHHHHHHHHHhC------------------CHH
Confidence 33377888888888764 11 12344677888999999888652 125
Q ss_pred HHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011316 246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI 309 (488)
Q Consensus 246 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L 309 (488)
.+..++.++++.||..+...++ .+.+..+ +++ ++.||..+...|
T Consensus 198 ~L~~Ll~D~d~~VR~~aa~~l~------------------~~~L~~L-~D~-~~~VR~aa~~~L 241 (244)
T 1lrv_A 198 DLLELLHDPDWTVRLAAVEHAS------------------LEALREL-DEP-DPEVRLAIAGRL 241 (244)
T ss_dssp GGGGGGGCSSHHHHHHHHHHSC------------------HHHHHHC-CCC-CHHHHHHHHCCC
T ss_pred HHHHHHcCCCHHHHHHHHHcCC------------------HHHHHHc-cCC-CHHHHHHHHHHh
Confidence 6778889999999999988753 2344445 666 899998886544
No 112
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.69 E-value=0.2 Score=44.95 Aligned_cols=292 Identities=14% Similarity=0.126 Sum_probs=169.7
Q ss_pred hhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHH
Q 011316 141 GNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTD 219 (488)
Q Consensus 141 ~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~ 219 (488)
.++..++....+-++..+++..+...+ +-.+.++.+..+..|...+... .-...-....+|.++..+. +++.++...
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDak-sL~~t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAK-ALAKTPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCG-GGGTSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchH-HHhhccccccchHHHHHhccCCCcceEEe
Confidence 344455555677788888999888888 7788899999999998887654 1122233677888888886 678999999
Q ss_pred HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-------CCcchHhHHHHHHhHhhcC------------C-------
Q 011316 220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-------PSPSVLIPALRTVGNIVTG------------D------- 273 (488)
Q Consensus 220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~------------~------- 273 (488)
....|+|+..+.....+..+..+.+..|...... .+..-+..+|.+++|-.+. +
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G 424 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG 424 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence 9999999999887777777888999988877533 1233445566666654421 0
Q ss_pred ---chhhHHHhhCCChHHHHHHhcccc-----hhhHHHHHHHHHHHHhcCC---HHHH----HHHHHcCChHHHHHHHh-
Q 011316 274 ---DMQTQCIINHQALPCLLDLLTQNY-----KKSIKKEACWTISNITAGN---VNQI----QAIIEAGIIGPLVNLLL- 337 (488)
Q Consensus 274 ---~~~~~~~~~~~~~~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~~~---~~~~----~~l~~~~~l~~L~~ll~- 337 (488)
..+...+++..++..++..|+-.. -.++|...++.+.-+.+.. .+.. +...+.+.+..++-.+.
T Consensus 425 ~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRTP~~Pkd~~l~VtDd~rk~NLvGHIciA~sW 504 (619)
T 3c2g_A 425 PNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDENRKENLIGHICAAYSW 504 (619)
T ss_dssp HHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTCTTSCCTTGGGCCCTTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcCCCCchhhhccccchhhhhhhHHHHHHHHHH
Confidence 123334556677778887775431 2345555554444443321 0100 00111223333333222
Q ss_pred ---cC-C-------hhHHHHHHHHHHHhccCC-CHHH-HHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhh
Q 011316 338 ---NA-E-------FEIKKEAAWAISNATSGG-SNEQ-IKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGE 402 (488)
Q Consensus 338 ---~~-~-------~~v~~~a~~aL~~l~~~~-~~~~-~~~l~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~ 402 (488)
.+ + ..+.+.+...|..+...+ +..+ ...+ -.+..=.++|+.. .+.....++..=.++++.++
T Consensus 505 a~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~---YsIsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP 581 (619)
T 3c2g_A 505 VFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYS---YSIDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCP 581 (619)
T ss_dssp HHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTT---TTSCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCT
T ss_pred hhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhhe---eeccCchhhhcccccChHHHHHHHHHHHHHHHhCc
Confidence 11 1 123455555565555433 2221 1111 2233444555543 35555555555555655544
Q ss_pred hhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011316 403 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 451 (488)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~ 451 (488)
..... - .-.-..++-+.+|.|+++.+.|..++.++
T Consensus 582 ~~Ad~------------W--~i~r~tle~l~NHsNsDIa~aasSLL~rf 616 (619)
T 3c2g_A 582 TRADI------------W--TIDRPMLEGLTNHRNSDIAKAANSLLSRF 616 (619)
T ss_dssp THHHH------------S--CCCHHHHHHHHTCSSHHHHHHHHHHHTTS
T ss_pred chhcc------------c--eechHHHHHHhcCCCchHHHHHHHHHHhC
Confidence 32110 0 00123456678999999999999988876
No 113
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.57 E-value=0.058 Score=50.87 Aligned_cols=149 Identities=17% Similarity=0.119 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 011316 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207 (488)
Q Consensus 128 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ 207 (488)
+++..++.|+..+.....+-|+.++. ++..++.++ .+.|..+|..|+..|..+|.+ .....+...|.+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence 57999999999999999888877655 567889998 888999999999999999987 336788899999
Q ss_pred hhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-CchhhHHHhhCCCh
Q 011316 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQAL 286 (488)
Q Consensus 208 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~ 286 (488)
+|.++++.-...+-.+|..+...++. +.+..+...+..+++.+|+.++..|..=... ..+....-.+.-+.
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~ 179 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL 179 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence 99998887777777777777655532 2334444444445778898888877554432 11111122233345
Q ss_pred HHHHHHhccc
Q 011316 287 PCLLDLLTQN 296 (488)
Q Consensus 287 ~~L~~lL~~~ 296 (488)
..+.++|++-
T Consensus 180 ~~ikK~L~DV 189 (507)
T 3u0r_A 180 TESKKVLEDV 189 (507)
T ss_dssp HHHHHHTTSC
T ss_pred HHHHHHhccc
Confidence 5566666544
No 114
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.56 E-value=0.18 Score=43.33 Aligned_cols=194 Identities=14% Similarity=0.068 Sum_probs=120.9
Q ss_pred CcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHh-------cccc---hhhHH-HHHHHHHHHHhcCCHHHHHH
Q 011316 255 SPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLL-------TQNY---KKSIK-KEACWTISNITAGNVNQIQA 322 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL-------~~~~---~~~v~-~~a~~~L~nl~~~~~~~~~~ 322 (488)
+++.|+.|+.-|+.=-...+...-.+. ..|.+..+++=+ ..+. ...-| ..|...+..++++ ++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence 344577777666553333333333333 234444443322 1110 11122 2333444455554 888889
Q ss_pred HHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011316 323 IIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397 (488)
Q Consensus 323 l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l 397 (488)
+++..+.-.|..+++.. -+.+|..++.+++.++...+++...++.+.+.++...+.++.+++-.+..|..++.++
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 99988888888888765 2568999999999999999999999999999999999999999998888999999999
Q ss_pred HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
+..+......... .++|.....-.| .-+..+..++++++-+...++.-++.+
T Consensus 173 L~dd~GL~YiC~t--~eRF~av~~vL~--~mV~~l~~~ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 173 LLDDTGLAYICQT--YERFSHVAMILG--KMVLQLSKEPSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp HHSHHHHHHHTSS--HHHHHHHHHHHH--HHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hccchhHHHHHcc--HHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 8765543322110 111222211111 123345577788876665555555443
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.53 E-value=0.56 Score=44.34 Aligned_cols=291 Identities=12% Similarity=0.050 Sum_probs=167.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHH
Q 011316 85 DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 164 (488)
Q Consensus 85 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 164 (488)
++ +..+..|+..+......-|+..+.- +..++.++++++..+|..|++.|..+|.+ . .... +...|.
T Consensus 40 g~-~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~ 106 (507)
T 3u0r_A 40 GG-TKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILT 106 (507)
T ss_dssp SC-HHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHH
Confidence 34 7999999999999999888887754 78999999999999999999999999987 3 2222 356788
Q ss_pred HHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-CchhHHHHHHhCC
Q 011316 165 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGV 243 (488)
Q Consensus 165 ~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~ 243 (488)
++| +..++.-...+-.+|..+...+ -.+.+..+...+.++++.+++.++..|..-... ..+....-.+.-+
T Consensus 107 QlL-qtdd~~E~~~V~~sL~sllk~D-------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i 178 (507)
T 3u0r_A 107 QLL-QTDDSAEFNLVNNALLSIFKMD-------AKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI 178 (507)
T ss_dssp HHT-TCCCHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred HHH-hccchHHHHHHHHHHHHHHhcC-------hHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence 888 6666666666667777666543 135566666666667899999998888653321 1111111222234
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhcCCc-hhhHHHhhCCChHHHHHHh------cccchhhHHHHHHHHHH----HH
Q 011316 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTIS----NI 312 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL------~~~~~~~v~~~a~~~L~----nl 312 (488)
+..+.+.|.+....--...+.+|..+-.... ...+. +++.+.... ... +.+.-...+.++. -+
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~F 252 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLF 252 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHh
Confidence 4556666655443333444555544443222 11111 222333321 112 2222222222222 22
Q ss_pred hc--CCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCC-----
Q 011316 313 TA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPD----- 383 (488)
Q Consensus 313 ~~--~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~~~~L~~ll~~~~----- 383 (488)
+. ++......+.+. ++|.+-.+-... .++.+...+.+++.++..+. .+....++. -+...|..++-.+.
T Consensus 253 S~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ymP~~p~~~~~ 330 (507)
T 3u0r_A 253 SKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYMPLPPEEAEN 330 (507)
T ss_dssp BTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTSCCCC-----
T ss_pred ccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHCCCCcccccc
Confidence 22 344555555554 777554332221 23478888999999987765 222222211 13444444443221
Q ss_pred --------H----HHHHHHHHHHHHHHHhhhhh
Q 011316 384 --------P----RIVTVCLEGLENILKAGEAE 404 (488)
Q Consensus 384 --------~----~v~~~al~~L~~l~~~~~~~ 404 (488)
+ .-++..+.+++.+....+..
T Consensus 331 ~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~ 363 (507)
T 3u0r_A 331 GENAGNEEPKLQFSYVECLLYSFHQLGRKLPDF 363 (507)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHTTCTHH
T ss_pred cccccccCcccchhHHHHHHHHHHHHhhhChhh
Confidence 1 23566777888887655443
No 116
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.42 E-value=0.023 Score=49.23 Aligned_cols=141 Identities=15% Similarity=0.094 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC----HH-HHH------H
Q 011316 298 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS----NE-QIK------F 365 (488)
Q Consensus 298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----~~-~~~------~ 365 (488)
+......++.+|..+... ......++. .+.+..+...+.++++.++..++..|..++...+ .+ ... .
T Consensus 67 ~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 446677888888888754 555666654 5578888888888899999999988888776543 11 111 1
Q ss_pred HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 011316 366 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444 (488)
Q Consensus 366 l~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a 444 (488)
..+..-...+++.++ ..+.+.+..++..+..++...+.... .-..+..|...|..+.+..+....++++..+-
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~------R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi 219 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQL 219 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence 123345667888777 45567888888888888776543321 12257788899999999999888888886554
Q ss_pred H
Q 011316 445 V 445 (488)
Q Consensus 445 ~ 445 (488)
.
T Consensus 220 ~ 220 (233)
T 2f31_A 220 C 220 (233)
T ss_dssp H
T ss_pred H
Confidence 3
No 117
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.33 E-value=0.12 Score=44.06 Aligned_cols=145 Identities=17% Similarity=0.082 Sum_probs=104.2
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhC-CCchhH
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCR 151 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~~l~~-~~~~~~ 151 (488)
.++....+.+++. .++|..|+..|+.. ... ...++.+.. +-..++..+++.+..++..++. ..++
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3445556667777 89999999998887 311 123666666 5556889999999999999874 3333
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011316 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~ 231 (488)
..++.+.... .+++..+++.|+..+.--+.. + ........+++.+-.+..+++.-|+..+.+.|..++..+
T Consensus 139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 1455566666 888999999999887654432 1 122233457777777788889999999999999999998
Q ss_pred chhHHHHHH
Q 011316 232 NDKIQAVIE 240 (488)
Q Consensus 232 ~~~~~~~~~ 240 (488)
++....+++
T Consensus 210 Pd~V~~~~~ 218 (240)
T 3l9t_A 210 PDLVKIELK 218 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665555
No 118
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.21 E-value=0.072 Score=45.33 Aligned_cols=143 Identities=10% Similarity=0.053 Sum_probs=101.0
Q ss_pred HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhcc-CCchhHHHHH
Q 011316 162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI 239 (488)
Q Consensus 162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~ 239 (488)
.+...|.++...++|..|+.+|..+ . .....++.+.. +..+++..|++.+..++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------ 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------ 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence 4555555677779999999988877 2 12457777776 5556789999999999998874 3332
Q ss_pred HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHH
Q 011316 240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 319 (488)
Q Consensus 240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 319 (488)
..++.+.....++++.+|+.|...+.-.+.. +.... -...+++.+-.+..++ +.-||+...|.|..++..+|+-
T Consensus 139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~ 212 (240)
T 3l9t_A 139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL 212 (240)
T ss_dssp --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence 2567788899999999999998877554432 11100 0112345555555666 8999999999999999988987
Q ss_pred HHHHHH
Q 011316 320 IQAIIE 325 (488)
Q Consensus 320 ~~~l~~ 325 (488)
...+++
T Consensus 213 V~~~~~ 218 (240)
T 3l9t_A 213 VKIELK 218 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 119
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.98 E-value=2.4 Score=46.37 Aligned_cols=299 Identities=8% Similarity=0.043 Sum_probs=166.9
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCC----
Q 011316 32 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASG---- 104 (488)
Q Consensus 32 i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~---- 104 (488)
+..+++.+.++ +...|.+|-..|.++-... .....+...|. .+.++.+|..|+..|.+....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 44455444444 6778888888888754321 23344444443 333389999999999887642
Q ss_pred -CchhhHHHHhCCCHHHHHHhhCC---CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHH
Q 011316 105 -TSENTRVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA 179 (488)
Q Consensus 105 -~~~~~~~~~~~g~i~~L~~lL~~---~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a 179 (488)
.++.+..+ +..+++.+...... .+..++...+.++..++... |... .+.++.++..+ .. ++.....+
T Consensus 82 l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~-~~-~~~~~e~~ 153 (1204)
T 3a6p_A 82 MSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLS-KQ-GETQTELV 153 (1204)
T ss_dssp SCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHH-HT-CHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHh-cC-CHHHHHHH
Confidence 23333333 33445554443221 46889999999999887432 1100 13466677776 32 44556778
Q ss_pred HHHHHHhhcCC---CCCChhh-----------hhchHHHHHHhhcc-------------------CChhHHHHHHHHHHH
Q 011316 180 TWTLSNFCRGK---PQPLFEQ-----------TRPALPALERLIHS-------------------NDDEVLTDACWALSY 226 (488)
Q Consensus 180 ~~~L~~l~~~~---~~~~~~~-----------~~~~~~~L~~ll~~-------------------~~~~v~~~al~~L~~ 226 (488)
+.+|..++... ....... ...+++.+..++++ ++..+...++.++.+
T Consensus 154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 88888876542 1111100 01333444444432 123466777777776
Q ss_pred hccCCchhHHHHHHhC--CHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc--hhhHHHhhC---CChHHHHHHhc-----
Q 011316 227 LSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQTQCIINH---QALPCLLDLLT----- 294 (488)
Q Consensus 227 l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~---~~~~~L~~lL~----- 294 (488)
...--+ ...+.+.. +++.+..++. ++.++..|+.+|..++.... .....++.. ..+..++..+.
T Consensus 234 ~l~Wi~--~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~ 309 (1204)
T 3a6p_A 234 YIDWVS--MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG 309 (1204)
T ss_dssp TTTTSC--HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred HHhccC--HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 654332 12233332 6677776665 46799999999999997542 222222221 11234444431
Q ss_pred --ccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011316 295 --QNYKKSIKKEACWTISNITAGNVNQIQAIIE-----------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 295 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 357 (488)
+..+.++.+..+..+..+... ...++. .++++.++.+..+++..+-..++.....+...
T Consensus 310 ~~~e~d~e~~k~l~~ll~~lg~~----l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 310 GLVEKHYVFLKRLCQVLCALGNQ----LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH----HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCccHHHHHHHHHHHHHHHHHHH----HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 121456666777777766521 222221 13588888888888877777777766656543
No 120
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.73 E-value=0.056 Score=50.61 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=109.8
Q ss_pred hhhHHHhhCCChHHHHHHhcc----------cchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhH
Q 011316 275 MQTQCIINHQALPCLLDLLTQ----------NYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEI 343 (488)
Q Consensus 275 ~~~~~~~~~~~~~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v 343 (488)
...+.+. .+++..|+.+|.. ..+......++.+|..+... ......++. ...+..|...+.+..+.+
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence 3444444 4566667766632 11346677888888888765 555565554 567889999998889999
Q ss_pred HHHHHHHHHHhccCCCHHH-HHH----------HHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011316 344 KKEAAWAISNATSGGSNEQ-IKF----------LVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTG 411 (488)
Q Consensus 344 ~~~a~~aL~~l~~~~~~~~-~~~----------l~~~~~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 411 (488)
+..++..|..++....++. ... ..+..-...+++.++. .+.+....++..+..++...+....
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~----- 253 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF----- 253 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----
Confidence 9999999988886543111 111 1234557788888886 5678888888888888776543321
Q ss_pred ccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011316 412 GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443 (488)
Q Consensus 412 ~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 443 (488)
.-..+..|...|..+.+..+...+++++..+
T Consensus 254 -R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 254 -RVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp -HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred -HHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 1125777889999999999887778877544
No 121
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.54 E-value=0.64 Score=40.08 Aligned_cols=139 Identities=12% Similarity=0.133 Sum_probs=88.1
Q ss_pred HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----C------CChhHHHHHHHHHHHhcCCCchhhHHHH-hCCCH
Q 011316 50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVI-DHGAV 118 (488)
Q Consensus 50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i 118 (488)
.+..|...+.+.+...++.+ ..+++..|++.|.. + ...+.+..++.||..+.. +....+.+. ..+.+
T Consensus 21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i 98 (233)
T 2f31_A 21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI 98 (233)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHH
T ss_pred HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHH
Confidence 34444444444434445666 45777777777642 1 125678889999999998 555555555 55788
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHHH----------hcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l 186 (488)
..+...+.++++.++..++..|+.+|..+. .. ...++ +..-..+++..+..+.+.+.+..++..+-.+
T Consensus 99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l 178 (233)
T 2f31_A 99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 178 (233)
T ss_dssp HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999998886553 12 22221 2223555666664444555555555555555
Q ss_pred hcCC
Q 011316 187 CRGK 190 (488)
Q Consensus 187 ~~~~ 190 (488)
....
T Consensus 179 i~~~ 182 (233)
T 2f31_A 179 ITPA 182 (233)
T ss_dssp HTTC
T ss_pred HCCC
Confidence 5554
No 122
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.44 E-value=0.65 Score=41.75 Aligned_cols=173 Identities=12% Similarity=0.065 Sum_probs=103.9
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHH----HHHHhhCC-CCHHHHHHHHHHHhhhhCCCc
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP----IFVRLLSS-PTDDVREQAVWALGNVAGDSP 148 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~----~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~ 148 (488)
.+..+.+++ +-. .+.+.-++..+.-.+. ++.....+.+...-. .+...+.+ ..+.-+-.++++++|+.....
T Consensus 104 ~l~~l~kil-~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~ 180 (304)
T 3ebb_A 104 QLQILWKAI-NCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA 180 (304)
T ss_dssp HHHHHHHHH-TSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred HHHHHHHHH-cCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence 345666766 323 4567777888877776 666666665443222 33344433 456678999999999987655
Q ss_pred hhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc-CChhHHHHHHHH
Q 011316 149 KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWA 223 (488)
Q Consensus 149 ~~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~-~~~~v~~~al~~ 223 (488)
.+..+.. ....++..+. .+.+..++..++..+.|++-.. ..........++..+..+++. .+.+....++-+
T Consensus 181 -g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA 257 (304)
T 3ebb_A 181 -GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA 257 (304)
T ss_dssp -HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred -hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 4555543 2233444332 3457788888888888887643 111222233455555566653 588999999999
Q ss_pred HHHhccCCchhHHHHHHh-CCHHHHHHhcCC
Q 011316 224 LSYLSDGTNDKIQAVIEA-GVCPRLVELLRH 253 (488)
Q Consensus 224 L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~ 253 (488)
|+++...+.+..+ +.+. ++-..+-.....
T Consensus 258 LGtL~~~~~~~~~-lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 258 LGTLISDDSNAVQ-LAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHHTTCHHHHH-HHHHTTHHHHGGGGGGC
T ss_pred HHHHHhCChhHHH-HHHHcCHHHHHHHHHhC
Confidence 9999987654433 4433 443434344433
No 123
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.34 E-value=1.9 Score=46.41 Aligned_cols=160 Identities=13% Similarity=0.114 Sum_probs=105.3
Q ss_pred cHhHHHHHHHHHHHhhc----CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011316 172 KLSMLRNATWTLSNFCR----GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 247 (488)
Q Consensus 172 ~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L 247 (488)
++.++..+..+++.+.. ..+.........+...+.+.+...+..-+..++.+|+|+... ..++.+
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l 476 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKI 476 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHH
Confidence 55666767777666643 333333334556666677777778888889999999998652 235566
Q ss_pred HHhcCC-----C--CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHH
Q 011316 248 VELLRH-----P--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQ 319 (488)
Q Consensus 248 ~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~ 319 (488)
.+++.. . ...++..|+++|..++...+... -+.++++.. ...+.++|..|+..|.... .+..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t~-P~~~- 546 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFESK-PSVA- 546 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCHH-
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHHC-cCHH-
Confidence 666632 1 23577889999999987544333 345777763 2337889999988886432 2233
Q ss_pred HHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhccCCCH
Q 011316 320 IQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN 360 (488)
Q Consensus 320 ~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~ 360 (488)
.+..+...+.. ++.+|.......|.+++....+
T Consensus 547 --------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 547 --------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp --------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred --------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 34445555655 4788888888899999877655
No 124
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.22 E-value=1 Score=41.97 Aligned_cols=156 Identities=12% Similarity=0.108 Sum_probs=102.3
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----------CCChhHHHHHHHHHHHh
Q 011316 33 PAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----------DDFPQLQFEAAWALTNI 101 (488)
Q Consensus 33 ~~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----------~~~~~v~~~a~~~L~~l 101 (488)
...++.|++.. ..-....+..|..-+.+.+...++.++ .+++..|++.|.. ......+..++.||..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34566666543 222234556666555555445567776 6678888888741 11147888999999999
Q ss_pred cCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHHH----------hcCChHHHHHHhc
Q 011316 102 ASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFN 168 (488)
Q Consensus 102 ~~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~ 168 (488)
.. +......++ ....+..+...+.+.++.++..++.+|+.+|..+. .. ...++ +..-...++..+.
T Consensus 148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 98 555555554 55789999999999999999999999999987653 21 22222 2234666777774
Q ss_pred ccccHhHHHHHHHHHHHhhcCC
Q 011316 169 EHAKLSMLRNATWTLSNFCRGK 190 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~ 190 (488)
...+.+.+..+...+-.+....
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~ 248 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPA 248 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTC
T ss_pred ccCcHHHHHHHHHHHHHHHcCC
Confidence 4456666666666666666654
No 125
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=95.19 E-value=0.92 Score=49.61 Aligned_cols=283 Identities=11% Similarity=0.085 Sum_probs=156.9
Q ss_pred hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHhhhhCC-----CchhHHHHHhcCCh
Q 011316 88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNGAL 160 (488)
Q Consensus 88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL--~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i 160 (488)
+..|..|-..|..+-. ++ .....+...| .+.+..+|..|+..|.+.... +++.+..+ +
T Consensus 27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r---- 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-K---- 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-H----
T ss_pred hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-H----
Confidence 6778888888877644 22 1233444333 346789999999999987633 22222222 2
Q ss_pred HHHHHHhccc------ccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---
Q 011316 161 MPLLAQFNEH------AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG--- 230 (488)
Q Consensus 161 ~~l~~~l~~~------~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~--- 230 (488)
..++..+... .+..++...+.++..++... +... ..+++.++.++.+ +......++.+|..+++.
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 2344444222 35778888999999988764 4333 4677788888765 556677788888877642
Q ss_pred C----chhHHH---HHHh---CCHHHHHHhcCC-------------------CCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011316 231 T----NDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCII 281 (488)
Q Consensus 231 ~----~~~~~~---~~~~---~~l~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 281 (488)
. ..+... .+.. .++..+..++.+ .+..++..++.++.+...--+ ...+.
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~ 244 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHIT 244 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHH
Confidence 1 111111 1111 222333333322 123456677777776654222 12233
Q ss_pred hCC--ChHHHHHHhcccchhhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CChHHHHHHHh--------cCChhHHHH
Q 011316 282 NHQ--ALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEA---GIIGPLVNLLL--------NAEFEIKKE 346 (488)
Q Consensus 282 ~~~--~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~l~~L~~ll~--------~~~~~v~~~ 346 (488)
+.. +++.+...+. ++.++..|+.+|..++... ++....++.. ..+..++.... +.+.++.+.
T Consensus 245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~ 321 (1204)
T 3a6p_A 245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR 321 (1204)
T ss_dssp TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence 332 6666776654 4578999999999999832 4433333321 01234444432 114566666
Q ss_pred HHHHHHHhccCCCHHHHHHHHHC-----------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011316 347 AAWAISNATSGGSNEQIKFLVSQ-----------GCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 347 a~~aL~~l~~~~~~~~~~~l~~~-----------~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~ 400 (488)
.+..+..+.. . ...+++. ++++.+..+..+++..+...++.....+++.
T Consensus 322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 7777766652 1 1112211 3466777777777777766666655545443
No 126
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.15 E-value=0.17 Score=45.50 Aligned_cols=109 Identities=11% Similarity=0.046 Sum_probs=73.0
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC--CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC---chhH
Q 011316 77 RFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS---PKCR 151 (488)
Q Consensus 77 ~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~---~~~~ 151 (488)
.+...+.++..+..+..++++++|+.. ++..+..+... .+++.+...+.+.+..++..++.++.|++... ...
T Consensus 151 ~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~- 228 (304)
T 3ebb_A 151 HLINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI- 228 (304)
T ss_dssp HHHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-
Confidence 344555544447789999999999998 77777777643 34455555555678999999999999997421 111
Q ss_pred HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011316 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 152 ~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~ 189 (488)
+.. ...+..+...+....|.+....++.+|+++...
T Consensus 229 ~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~ 264 (304)
T 3ebb_A 229 EGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISD 264 (304)
T ss_dssp HHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred hHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence 111 113344445554556888888899999998865
No 127
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=94.99 E-value=0.39 Score=43.10 Aligned_cols=161 Identities=14% Similarity=0.181 Sum_probs=112.2
Q ss_pred HHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc
Q 011316 218 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 297 (488)
Q Consensus 218 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~ 297 (488)
..+...| ++.-++++.+.-+++.+++..+......++.++.++.+..|...+.... ....-+ .+.++.++..+.-..
T Consensus 261 tR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks-L~~t~L-~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 261 IRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA-LAKTPL-ENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG-GGTSCC-TTHHHHHHHHHHHCC
T ss_pred HHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH-Hhhccc-cccchHHHHHhccCC
Confidence 3344433 4445566788889999999999999999999999999999988876322 211111 256788888775444
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-------ChhHHH-------HHHHHHHHhcc------C
Q 011316 298 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-------EFEIKK-------EAAWAISNATS------G 357 (488)
Q Consensus 298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-------~~~v~~-------~a~~aL~~l~~------~ 357 (488)
+.++.....+.|+|...+.....+.-+.+|.++.|...+... +..-++ +++.++.|+.- +
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N 417 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN 417 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence 888999999999999998888777788899999999987653 222333 44444555431 1
Q ss_pred C--------CHHHHHHHHHCCChHHHHhhcCC
Q 011316 358 G--------SNEQIKFLVSQGCIKPLCDLLNC 381 (488)
Q Consensus 358 ~--------~~~~~~~l~~~~~~~~L~~ll~~ 381 (488)
+ +..+.-.+++.++++.|+.+|+-
T Consensus 418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~ 449 (619)
T 3c2g_A 418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSC 449 (619)
T ss_dssp SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHC
T ss_pred CccccCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 22344445666778888888764
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.67 E-value=0.37 Score=45.11 Aligned_cols=139 Identities=14% Similarity=0.081 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH-HHH----------
Q 011316 298 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-IKF---------- 365 (488)
Q Consensus 298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~---------- 365 (488)
+......++.+|..+... ......++. .+.+..+...+.++.+.++..++..|..++....++. ...
T Consensus 71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 456677888888888765 445555554 5678888888888889999999988888776543111 111
Q ss_pred HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011316 366 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443 (488)
Q Consensus 366 l~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~ 443 (488)
..+..-+..+++.++ +.+.+....++..+..++...+.... ....+..|...|..+.+..+....++++..+
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~------R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 123345667777776 45677888888888888776554321 1225788899999999999988888887655
No 129
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.51 E-value=3 Score=38.66 Aligned_cols=89 Identities=10% Similarity=0.115 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh
Q 011316 45 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 124 (488)
Q Consensus 45 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l 124 (488)
..++..+..+.+++-..+.. .-.++++.++.+-.+++ .++|...+..|...+....+... ..++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46888888888875543222 22468999999988888 89999999999988875555433 346788888
Q ss_pred hCCCCHHHHHHHHHHHhhhh
Q 011316 125 LSSPTDDVREQAVWALGNVA 144 (488)
Q Consensus 125 L~~~~~~~~~~a~~~L~~l~ 144 (488)
++++++.+...++.+.+++.
T Consensus 109 L~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH
Confidence 88889999998888887763
No 130
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.39 E-value=2.3 Score=36.96 Aligned_cols=101 Identities=6% Similarity=0.060 Sum_probs=72.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011316 32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV 111 (488)
Q Consensus 32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 111 (488)
+-.+++..+....+.+...+....+++-..+.... ..+++.++.+..+++ .++|...+..+...+...++....
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~ 90 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH 90 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443347899999999997665422222 246777888776766 899999999999888655544333
Q ss_pred HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 011316 112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143 (488)
Q Consensus 112 ~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l 143 (488)
.++.|..+++++++.+.+.++.+..++
T Consensus 91 -----~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 91 -----VINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp -----HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 468888889888999999888877776
No 131
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.95 E-value=3 Score=44.86 Aligned_cols=166 Identities=15% Similarity=0.176 Sum_probs=109.5
Q ss_pred HHHHHHhhCC----CCHHHHHHHHHHHhhhh----CCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHh
Q 011316 118 VPIFVRLLSS----PTDDVREQAVWALGNVA----GDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 118 i~~L~~lL~~----~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~v~~~a~~~L~~l 186 (488)
+..+..++.+ .++.+++.++-+++.++ ...+.|.. ..++.+.+.+. ...+..-+..++.+|+|+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 5666667765 56788888888887775 23222211 12444444432 334566778899999998
Q ss_pred hcCCCCCChhhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc--CCCCcc
Q 011316 187 CRGKPQPLFEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSPS 257 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~L~~ll~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~~ 257 (488)
... ..++.+.+++.. ....++..|+++|..+....+...+ +.++++. ...+++
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE 529 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence 763 466777777642 1356888999999999876543333 4566666 346788
Q ss_pred hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011316 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN 316 (488)
Q Consensus 258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~ 316 (488)
+|..|+..|... +|.. ..+..+...+....+..|+......|.+++...
T Consensus 530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 999888877432 2322 235667777777558899999999999998843
No 132
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=93.62 E-value=4.1 Score=37.99 Aligned_cols=140 Identities=11% Similarity=0.136 Sum_probs=89.8
Q ss_pred HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----CC------ChhHHHHHHHHHHHhcCCCchhhHHHH-hCCCH
Q 011316 50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----DD------FPQLQFEAAWALTNIASGTSENTRVVI-DHGAV 118 (488)
Q Consensus 50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i 118 (488)
.+..|...+.+.+...++.+. .+++..|+..|.. .. ....+..++.||..+.. +....+.+. ..+.+
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHH
T ss_pred HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHH
Confidence 344444444444344455564 5677777777641 11 25678899999999998 554555444 55789
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHHH----------hcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011316 119 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186 (488)
Q Consensus 119 ~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l 186 (488)
..+...+.++++.++..++..|..+|..+. .. ...++ +..-...++..+..+.+.+.+..++..+-.+
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l 182 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 182 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999999998886553 21 22221 2234556777775455666666666666666
Q ss_pred hcCCC
Q 011316 187 CRGKP 191 (488)
Q Consensus 187 ~~~~~ 191 (488)
....+
T Consensus 183 v~~~~ 187 (386)
T 2bnx_A 183 ITPAE 187 (386)
T ss_dssp HTTCS
T ss_pred HCCCC
Confidence 66543
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=93.12 E-value=0.14 Score=41.24 Aligned_cols=76 Identities=13% Similarity=0.194 Sum_probs=58.6
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~ 449 (488)
++..|..-|.+.++.++..|+..|..+++.+... |...+.....++.+..+... .+++|++++..++.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~-----------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~ 121 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI-----------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMV 121 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH-----------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH-----------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 4666777788899999999999999998876532 56566666667777777654 67899999999999
Q ss_pred HhcCCCCC
Q 011316 450 TYWVEEDE 457 (488)
Q Consensus 450 ~~~~~~~~ 457 (488)
.+...-..
T Consensus 122 ~W~~~f~~ 129 (163)
T 1x5b_A 122 EWSEEFQK 129 (163)
T ss_dssp HHHHHTTT
T ss_pred HHHHHhcC
Confidence 88776554
No 134
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=92.38 E-value=0.93 Score=40.05 Aligned_cols=136 Identities=14% Similarity=0.084 Sum_probs=91.1
Q ss_pred cchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHH
Q 011316 256 PSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--AGIIGPL 332 (488)
Q Consensus 256 ~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~l~~L 332 (488)
......|+..|.-++.......+.+- +...+..|+ +.... .+.++..|+.+++...+.+|+....+.+ ..++..+
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l 119 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI 119 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence 33566788888888875544443332 323333333 22333 6679999999999999999999988876 3456666
Q ss_pred HHHHhc-------CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHH
Q 011316 333 VNLLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILK 399 (488)
Q Consensus 333 ~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~--~~~v~~~al~~L~~l~~ 399 (488)
+.-|.. ....+++.-+.+|.-|+.... .. ....+..|.+++... ++.++..++..+..++.
T Consensus 120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~-~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTSE-DL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST-TC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH-hh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 655443 234566777888888877531 11 135677777777766 88999999999988875
No 135
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=92.02 E-value=0.48 Score=36.76 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=57.5
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh-ccHHHHHHhhcCCC--------HHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA-EGLEKIENLQSHDN--------TEIY 441 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~l~~l~~~~~--------~~v~ 441 (488)
+++.|.+-|+.+++.++..+|.+|..++..+... |...+.+. ..++.+.++...++ ..|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~-----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR 118 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE-----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVR 118 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH-----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH-----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHH
Confidence 5778888888889999999999999998765432 55555433 34555555544433 7799
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 011316 442 EKAVKILETYWVEEDEDE 459 (488)
Q Consensus 442 ~~a~~~l~~~~~~~~~~~ 459 (488)
.+|..+++-+|+++..+.
T Consensus 119 ~~AkEl~~ll~d~~~~~~ 136 (140)
T 1vdy_A 119 ETAHETISAIFSEENGSG 136 (140)
T ss_dssp HHHHHHHHHHTCCSSCCC
T ss_pred HHHHHHHHHHhCcCCCCC
Confidence 999999999999887743
No 136
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=90.75 E-value=6 Score=36.75 Aligned_cols=259 Identities=13% Similarity=0.066 Sum_probs=121.0
Q ss_pred CChhHHHHHHHHHHHhcCC---CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHH
Q 011316 86 DFPQLQFEAAWALTNIASG---TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMP 162 (488)
Q Consensus 86 ~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 162 (488)
.+|.++. +-..+..+... ++......++...+..|+.++.++|+.=|...-.+|.++-..-...|..+.. ..-..
T Consensus 97 sWpHLql-VYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~inni 174 (403)
T 3fga_B 97 AWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNI 174 (403)
T ss_dssp THHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHH
T ss_pred CcHHHHH-HHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHH
Confidence 3455543 23344444331 2333344455567888999999999999999888888875433333333221 11123
Q ss_pred HHHHhcccccHhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhccCChhH-HHHHHHHHHHhccCCchhHHHHHH
Q 011316 163 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIE 240 (488)
Q Consensus 163 l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v-~~~al~~L~~l~~~~~~~~~~~~~ 240 (488)
+.+.+.......=....+.+++.+..+-... ......-....|+.+-+...-.. -.....++......++.....++
T Consensus 175 f~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi- 253 (403)
T 3fga_B 175 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV- 253 (403)
T ss_dssp HHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred HHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-
Confidence 3333322221122234555555555544211 12222333445555555443222 23344444444444443333222
Q ss_pred hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH-----HHHhc
Q 011316 241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI-----SNITA 314 (488)
Q Consensus 241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L-----~nl~~ 314 (488)
..+++.=-..++.-...-+.-+..+...- +.....+. ..++..+...+.++ +..|-..|+... .++..
T Consensus 254 ----~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~ 327 (403)
T 3fga_B 254 ----MALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLIS 327 (403)
T ss_dssp ----HHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHH
T ss_pred ----HHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHH
Confidence 11221111122222222233344444322 22222221 23566677777777 777877776543 22222
Q ss_pred CCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccC
Q 011316 315 GNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSG 357 (488)
Q Consensus 315 ~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 357 (488)
.+...+-.+ +++.|.+..... +..++..+..++.-+...
T Consensus 328 ~n~~~IlPi----i~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 328 DNAAKILPI----MFPSLYRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp TTHHHHHHH----HHHHHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHH----HHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 222221111 233343333333 778888888888887653
No 137
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=90.55 E-value=3.1 Score=36.81 Aligned_cols=148 Identities=11% Similarity=0.091 Sum_probs=97.0
Q ss_pred chHHHHHHhhccC------ChhHHHHHHHHHHHhccCCchhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 200 PALPALERLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 200 ~~~~~L~~ll~~~------~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
.-+..+..+++++ +......++..|..++.....-.+ +++ ...+..|+ +.....+.+++.|.++|+...+
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~K-I~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR 99 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYK-IITHEFALLANLS-LNENLPLTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHH-HHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhH-HHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence 3444555666665 455678888888888866543333 443 34444444 3344566799999999999999
Q ss_pred CCchhhHHHhh--CCChHHHHHHhcc-------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--C
Q 011316 272 GDDMQTQCIIN--HQALPCLLDLLTQ-------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--E 340 (488)
Q Consensus 272 ~~~~~~~~~~~--~~~~~~L~~lL~~-------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~ 340 (488)
.+|.....+.+ ..++..+..-|.. . ...+.+.-+.+|.-|...+.. + ....+..|.+++... +
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d 173 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-SNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKD 173 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCC
Confidence 99988877764 3444444444422 2 335666777778777775321 1 234678888888777 8
Q ss_pred hhHHHHHHHHHHHhc
Q 011316 341 FEIKKEAAWAISNAT 355 (488)
Q Consensus 341 ~~v~~~a~~aL~~l~ 355 (488)
+.+|..++..+..+.
T Consensus 174 ~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 174 KQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 899999999888876
No 138
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=88.37 E-value=15 Score=34.83 Aligned_cols=236 Identities=13% Similarity=0.055 Sum_probs=119.7
Q ss_pred chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011316 106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185 (488)
Q Consensus 106 ~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~ 185 (488)
+......++...+..|+.++.++++.-|...-.+|..+-..-...|..+.. ..-..+.+.+.......=....+..++.
T Consensus 152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgS 230 (449)
T 2npp_B 152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGS 230 (449)
T ss_dssp STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 334455556678899999999999999999888887775433333333322 1222344444222222223456677777
Q ss_pred hhcCCCCC-ChhhhhchHHHHHHhhccCChhH-HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHH
Q 011316 186 FCRGKPQP-LFEQTRPALPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263 (488)
Q Consensus 186 l~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~v-~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 263 (488)
+..+-... ......-....|+.+.+...-.. -.....++......++.....++ ..|++.=-..++.-...-+
T Consensus 231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL 305 (449)
T 2npp_B 231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFL 305 (449)
T ss_dssp HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHH-----HHHHHhCCCCCchHHHHHH
Confidence 77665222 22233334455556655443222 22334444444444443333222 2222211112221122233
Q ss_pred HHHhHhhcCC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH-----HHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011316 264 RTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-----NITAGNVNQIQAIIEAGIIGPLVNLLL 337 (488)
Q Consensus 264 ~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~-----nl~~~~~~~~~~l~~~~~l~~L~~ll~ 337 (488)
.-+..+.... +.....+. ..++..+-..+.++ +..|-..|+.... ++...+.. .++|.+...+.
T Consensus 306 ~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~li~~n~~--------~IlPii~p~L~ 375 (449)
T 2npp_B 306 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAA--------KILPIMFPSLY 375 (449)
T ss_dssp HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHH--------HHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHHHHhchh--------hhHHhhHHHHH
Confidence 3344444322 22222222 23566677777887 7778777764432 22222222 24566666553
Q ss_pred c----C-ChhHHHHHHHHHHHhccC
Q 011316 338 N----A-EFEIKKEAAWAISNATSG 357 (488)
Q Consensus 338 ~----~-~~~v~~~a~~aL~~l~~~ 357 (488)
. . +..++..+..++.-+...
T Consensus 376 ~~s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 376 RNSKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp SCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 2 2 677888888888877654
No 139
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=88.28 E-value=1.5 Score=34.54 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=59.4
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC------CCHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKA 444 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~------~~~~v~~~a 444 (488)
++..|..-+.++++.++..|+..|..+++.+... |...+.+...++.|..+... .+++|+++.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 107 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK-----------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRV 107 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHH
Confidence 4667777778999999999999999998876533 66777777778888888653 478999999
Q ss_pred HHHHHHhcCCCC
Q 011316 445 VKILETYWVEED 456 (488)
Q Consensus 445 ~~~l~~~~~~~~ 456 (488)
..++..+...-.
T Consensus 108 l~li~~W~~~f~ 119 (148)
T 1mhq_A 108 IEILFSWTVWFP 119 (148)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHHcC
Confidence 999988776543
No 140
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=88.10 E-value=1.3 Score=34.45 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=57.4
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~ 450 (488)
++..|..-+.+.++.++..|+..|..+++.+... |...+.+...++.+..+....+++|+++...++..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~-----------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~ 111 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI-----------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVE 111 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 4667777788889999999999999888776432 45555555566667777667789999999999998
Q ss_pred hcCCCCC
Q 011316 451 YWVEEDE 457 (488)
Q Consensus 451 ~~~~~~~ 457 (488)
+...-..
T Consensus 112 W~~~f~~ 118 (140)
T 3ldz_A 112 WTDEFKN 118 (140)
T ss_dssp HHHHHTT
T ss_pred HHHHhCC
Confidence 7765443
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=87.80 E-value=2.2 Score=34.51 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=57.3
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA 444 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~a 444 (488)
++..|..-+.+.++.++..|+..|..+++.+... |...+.+...++.|..+.. ..+.+|++++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~-----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 119 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR-----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV 119 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence 4667777788899999999999999999886533 5666777777777888764 2468999999
Q ss_pred HHHHHHhcCCC
Q 011316 445 VKILETYWVEE 455 (488)
Q Consensus 445 ~~~l~~~~~~~ 455 (488)
..++..+...-
T Consensus 120 l~li~~W~~~f 130 (171)
T 1juq_A 120 IELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHc
Confidence 99998766543
No 142
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=87.28 E-value=1.2 Score=34.65 Aligned_cols=72 Identities=8% Similarity=0.048 Sum_probs=58.1
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 399 (488)
++..+.+-+.++++.++..|+..|-.++.++.......+.+..++..|..+++..++.|+..++..+..-..
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 466677778888999999999999999999888777676666777778888777788999998888876543
No 143
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=87.02 E-value=2.6 Score=33.15 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=58.8
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA 444 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~------~~~~~v~~~a 444 (488)
++..|..-+.++++.++..|+..|..+++.+... |...+.....++.|..+.. ..+++|+++.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~-----------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki 117 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR-----------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKI 117 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH-----------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHH
Confidence 4667777778899999999999999998876643 5666777777888888864 3579999999
Q ss_pred HHHHHHhcCCC
Q 011316 445 VKILETYWVEE 455 (488)
Q Consensus 445 ~~~l~~~~~~~ 455 (488)
..++..+...-
T Consensus 118 l~li~~W~~~f 128 (149)
T 3g2s_A 118 LELLYSWTVGL 128 (149)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99998876654
No 144
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=86.98 E-value=0.88 Score=36.56 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=57.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
+.+..|.+.|++.++.+++.|+..|-.+..+-.......+....++..|++++.....+.|+..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 56777888889999999999999999988875444455666677888888888764448899998887766654
No 145
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=85.63 E-value=1.6 Score=34.42 Aligned_cols=71 Identities=8% Similarity=-0.072 Sum_probs=58.3
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHH
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENIL 398 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~ 398 (488)
++..|.+-++++++.++..|+..|-.++.++.......+.+..++..|..++.. .++.|+..++..+..-.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 466677778889999999999999999999988888888888889999988864 36788888877766543
No 146
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=84.13 E-value=1.6 Score=34.34 Aligned_cols=73 Identities=8% Similarity=-0.047 Sum_probs=60.4
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA 400 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~~~ 400 (488)
++..|.+-+++.++.++..|+..|-.++.++.......+....++..|+.++.. .++.|+..++..+..-...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 466677778888999999999999999999998888888777888889988863 5678999988888766543
No 147
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=83.26 E-value=19 Score=34.04 Aligned_cols=228 Identities=11% Similarity=0.069 Sum_probs=123.4
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC----
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---- 105 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---- 105 (488)
.-+..|+..+.|+|+..|..--..|..+-.+- ...+..+...+-..+.+.+.......-....+++++.+..+-
T Consensus 162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PL 239 (449)
T 2npp_B 162 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 239 (449)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSC--TTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCC
Confidence 56778999999999999999888888875543 223333333344455555543332344456788888887643
Q ss_pred -chhhHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011316 106 -SENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 183 (488)
Q Consensus 106 -~~~~~~~~~~g~i~~L~~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~~L 183 (488)
++.+..+ ...|+.+.+... ......-..++..+...++..... ++..+++.- ..+++.-...-+.-+
T Consensus 240 Keehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-----vi~~LLk~W-P~tns~KevlFL~el 308 (449)
T 2npp_B 240 KEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-----VVMALLKYW-PKTHSPKEVMFLNEL 308 (449)
T ss_dssp CHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHTC-CSSCHHHHHHHHHHH
T ss_pred cHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-----HHHHHHHhC-CCCCchHHHHHHHHH
Confidence 2333222 234444444432 222233445555555444443222 233344333 233333223333334
Q ss_pred HHhhcCCCCCCh-hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhcCC-----C
Q 011316 184 SNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRH-----P 254 (488)
Q Consensus 184 ~~l~~~~~~~~~-~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~-----~ 254 (488)
..+...-+.... .....+...+...+.+++-.|.+.|+....| +.. ..++.. .+++.+...|.. =
T Consensus 309 eeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i-~~li~~n~~~IlPii~p~L~~~s~~HW 382 (449)
T 2npp_B 309 EEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYI-MSLISDNAAKILPIMFPSLYRNSKTHW 382 (449)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHH-HHHHHTTHHHHHHHHHHHHTSCTTCCS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHH-HHHHHhchhhhHHhhHHHHHHHHHHhc
Confidence 444433222222 2335677778888889999998888755433 111 112221 345666665522 1
Q ss_pred CcchHhHHHHHHhHhhcCCchh
Q 011316 255 SPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 255 ~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
+..++..+..++..+...++..
T Consensus 383 n~~V~~la~~vlk~l~e~d~~l 404 (449)
T 2npp_B 383 NKTIHGLIYNALKLFMEMNQKL 404 (449)
T ss_dssp STTHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHHCHHH
Confidence 4678888988888887766543
No 148
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=82.53 E-value=23 Score=30.63 Aligned_cols=131 Identities=16% Similarity=0.139 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC
Q 011316 174 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253 (488)
Q Consensus 174 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 253 (488)
+.+...+.-...++... .......+++.++.+..+.+.+++......+...+....+... ..++.|..++.+
T Consensus 30 ~~kl~~L~qa~el~~~~---dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll~d 101 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS---CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLLRD 101 (257)
T ss_dssp HHHHHHHHHHHHHHTTT---TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcc---CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcC
Confidence 35555555555655443 1235577888888887778899999999999888855443322 567788888888
Q ss_pred CCcchHhHHHHHHhHhhcC-------Cch---hhHHHhh--CCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316 254 PSPSVLIPALRTVGNIVTG-------DDM---QTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 254 ~~~~v~~~a~~~L~~l~~~-------~~~---~~~~~~~--~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
+++.+...++.+.+++-.. ++. ......+ ..+-..++.++++. +..+|..+...+..+.
T Consensus 102 ~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~-n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 102 NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE-NDGIRTNAIKFLEGVV 172 (257)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC-CcchHHHHHHHHHHHH
Confidence 8888888888777766421 111 0111111 12334555666666 7777777776666654
No 149
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=81.49 E-value=1.9 Score=34.96 Aligned_cols=71 Identities=8% Similarity=-0.030 Sum_probs=57.1
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHH
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENIL 398 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~------~~~~v~~~al~~L~~l~ 398 (488)
++..|.+-++++++.++..|+..|-.++.++.......+.+..++..|+.++.. .+..|+..++..+..-.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456677788889999999999999999999877777777777888888888862 35788888887776543
No 150
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=81.42 E-value=1.1 Score=38.35 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=57.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
+.+..|.+-|++.++.+++.|+..|-.++.+-+......+....++..|.++++....+.++..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 56777888899999999999999999988765444455566667777888888654447899988888877654
No 151
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=78.09 E-value=5.5 Score=42.24 Aligned_cols=221 Identities=14% Similarity=0.133 Sum_probs=119.1
Q ss_pred hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH-----hccCCchh
Q 011316 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY-----LSDGTNDK 234 (488)
Q Consensus 160 i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~-----l~~~~~~~ 234 (488)
+.-|+++. -+.-.+|+..|-.+|......-+.........++..|-.-+...+.+-.+.|+.+|.. .+..+-..
T Consensus 135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~~ 213 (997)
T 1vsy_5 135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYKD 213 (997)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHHH
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChHH
Confidence 44566655 6667889999999999988765444444444444444443344567777777776651 11111111
Q ss_pred HHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011316 235 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313 (488)
Q Consensus 235 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~ 313 (488)
-..+++.+++....+.++++..+-.+...+...... ..-.+++...+ .-+..+ +..+- .+........
T Consensus 214 -----~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~-d~~i~-~~~~~~~~~~ 282 (997)
T 1vsy_5 214 -----IGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPP-DGTIN-LQVEAVKLAK 282 (997)
T ss_dssp -----HHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCS-CSSTT-SHHHHHHHHT
T ss_pred -----HHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCC-cHHHH-HHHHHHHHHH
Confidence 114667777777777888887766665555442211 00001111111 122222 22211 1122222111
Q ss_pred cCCHHHHHHHHH--cCChHHHHHHHhc-CC--hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHH
Q 011316 314 AGNVNQIQAIIE--AGIIGPLVNLLLN-AE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 388 (488)
Q Consensus 314 ~~~~~~~~~l~~--~~~l~~L~~ll~~-~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~ 388 (488)
...+....+ .++...|+++.++ .+ +.....++..|.++...-+... ...+++.+.+.+.++++.++.
T Consensus 283 ---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~-----~~~~v~~~~~~l~~dhp~~R~ 354 (997)
T 1vsy_5 283 ---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKP-----DKRAVFSIISQISTKHPEIIH 354 (997)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCC-----CHHHHHHHHGGGGGCCHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHhhcCCCHHHHH
Confidence 111211111 2355556676633 36 8888888888777764331110 112466677888889999999
Q ss_pred HHHHHHHHHHHh
Q 011316 389 VCLEGLENILKA 400 (488)
Q Consensus 389 ~al~~L~~l~~~ 400 (488)
.++.++..++..
T Consensus 355 ~a~~~l~~il~~ 366 (997)
T 1vsy_5 355 LVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877754
No 152
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=77.86 E-value=20 Score=33.22 Aligned_cols=118 Identities=17% Similarity=0.139 Sum_probs=78.2
Q ss_pred CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh-h
Q 011316 327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE-K 405 (488)
Q Consensus 327 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~-~ 405 (488)
++++.++.+-.+.+.++|+..+..|...+... .+... .+++.|..+++++++.+...++.+..++....-.. .
T Consensus 63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-IELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58888998888889999999999998887532 23322 25778888888889999988888877775422111 0
Q ss_pred ccCCCC--ccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 406 NMGNTG--GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 406 ~~~~~~--~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
...+.. ....|.. +. ...+.+..+..+.+..++-.+.+.+++...
T Consensus 137 ~~~~~~~~~e~~W~~-m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 137 KSRVISELQEACWDM-VS--AMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HC-CCCHHHHHHHHH-HH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHH-HH--HHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 000000 0011211 11 124556667788999999999999999653
No 153
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=76.97 E-value=7.7 Score=32.99 Aligned_cols=74 Identities=12% Similarity=0.278 Sum_probs=54.0
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~ 449 (488)
++..|..-+.+.++.++..|+..|..+++..... |...+.....++.|..+. ...+++|+++...++.
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~-----------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~ 114 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT-----------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQ 114 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH-----------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH-----------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4666777778899999999999999998776542 455555555566666654 4467899999999998
Q ss_pred HhcCCC
Q 011316 450 TYWVEE 455 (488)
Q Consensus 450 ~~~~~~ 455 (488)
.+...-
T Consensus 115 ~W~~~f 120 (226)
T 3zyq_A 115 AWAHAF 120 (226)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776543
No 154
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.73 E-value=1.8 Score=36.86 Aligned_cols=74 Identities=12% Similarity=0.089 Sum_probs=55.3
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
+.+..|.+-|++.++.+++.|+..|-.++.+-+......+....++..|++++.+..++.++..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 56677888889999999999999999988765333445555666788888887654447888888877766553
No 155
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.56 E-value=8.3 Score=32.65 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=53.3
Q ss_pred ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHH
Q 011316 371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILE 449 (488)
Q Consensus 371 ~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~-~~~~~~v~~~a~~~l~ 449 (488)
++..|..-|.++++.++..|+..|..+++..... |...+.+...++.+..+. +..+.+|++++..+++
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~-----------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~ 111 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP-----------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ 111 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH-----------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 4556667778899999999999999998876532 445555555566666664 3467899999998888
Q ss_pred HhcCCC
Q 011316 450 TYWVEE 455 (488)
Q Consensus 450 ~~~~~~ 455 (488)
.+...-
T Consensus 112 ~W~~~f 117 (220)
T 1dvp_A 112 TWAYAF 117 (220)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 766543
No 156
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=75.60 E-value=7.9 Score=30.72 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=54.4
Q ss_pred ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH-HHHhhc---CCCHHHHHHHH
Q 011316 371 CIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQS---HDNTEIYEKAV 445 (488)
Q Consensus 371 ~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~l~~---~~~~~v~~~a~ 445 (488)
++..|..-++ .+++.++..|+..|..+++.+... |...+.+...++. +..+.. .+..+|++++.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~-----------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil 122 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR-----------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVL 122 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH-----------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHH
Confidence 4566667776 478899999999999998876432 5666666666666 566552 34579999999
Q ss_pred HHHHHhcCCCC
Q 011316 446 KILETYWVEED 456 (488)
Q Consensus 446 ~~l~~~~~~~~ 456 (488)
.++..+...-.
T Consensus 123 ~li~~W~~~f~ 133 (157)
T 1elk_A 123 NLIQSWADAFR 133 (157)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHcC
Confidence 99988776543
No 157
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=71.51 E-value=13 Score=39.35 Aligned_cols=187 Identities=12% Similarity=0.079 Sum_probs=109.2
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc---cccHhHHHHHHHHHH--HhhcCCC
Q 011316 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLS--NFCRGKP 191 (488)
Q Consensus 117 ~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~v~~~a~~~L~--~l~~~~~ 191 (488)
++.-|+++--+..+++|..|-.+|......-+..+.. +++.+++.|.. +.+.+-..-|+++|. .+... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 4677788888899999999999999988766655544 36778887754 445555666666554 11111 1
Q ss_pred CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc------------------------hhHHH----------
Q 011316 192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN------------------------DKIQA---------- 237 (488)
Q Consensus 192 ~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~------------------------~~~~~---------- 237 (488)
.........+++.+++....++++++..+-.+...+..... ...+.
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 12333445666777777666666665554444333322100 00000
Q ss_pred -HHH--hCCHHHHHHhc-CCCC--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011316 238 -VIE--AGVCPRLVELL-RHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN 311 (488)
Q Consensus 238 -~~~--~~~l~~L~~lL-~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n 311 (488)
..+ .++...++... .+.. +.....++..+.++....+ ......++..+++.+.++ .+.+|..|..++..
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQISTK-HPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence 000 12333344554 2344 6677777777555554222 112334667788888888 89999999988866
Q ss_pred Hhc
Q 011316 312 ITA 314 (488)
Q Consensus 312 l~~ 314 (488)
+..
T Consensus 363 il~ 365 (997)
T 1vsy_5 363 TCN 365 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 158
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=65.67 E-value=9.3 Score=30.31 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=54.7
Q ss_pred ChHHHHHHHh-cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHH-HHhhcC---CCCHHHHHHHHHHHHHHHH
Q 011316 328 IIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP-LCDLLN---CPDPRIVTVCLEGLENILK 399 (488)
Q Consensus 328 ~l~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~-L~~ll~---~~~~~v~~~al~~L~~l~~ 399 (488)
++..|.+-++ ++++.++..|+..|-.++.++.......+.+..++.. |+.++. .++..|+..++..+..-..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4556777776 4688999999999999999998888777777777877 777774 2345788888877765543
No 159
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=65.66 E-value=32 Score=31.84 Aligned_cols=191 Identities=9% Similarity=0.028 Sum_probs=100.2
Q ss_pred hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCch
Q 011316 197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM 275 (488)
Q Consensus 197 ~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 275 (488)
....++..|+.++.++|+.-|...-.+|..+-..-..... .+...+-..+.+.... ....-....+.+++.+..+...
T Consensus 171 id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~-~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~ 249 (392)
T 2jak_A 171 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFAL 249 (392)
T ss_dssp SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCC
Confidence 3467888999999999999999988888776544333333 3333333445555533 3344556778888888776431
Q ss_pred hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011316 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355 (488)
Q Consensus 276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~ 355 (488)
-.+.-...=....++.+.+.+.-......-..++..+...++.....+ +..|++.--..+..=...-+.-|..+.
T Consensus 250 PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~eleeiL 324 (392)
T 2jak_A 250 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEEIL 324 (392)
T ss_dssp SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 100000001123445555544222233344455555555434322222 222222211122221222333344444
Q ss_pred cCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 011316 356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 394 (488)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L 394 (488)
...+++....+.. .+...+.+++.+++-.|.+.|+...
T Consensus 325 e~~~~~~f~~i~~-~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 325 DVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HTCCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HhCCHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 4445554444322 4677788888888888888877443
No 160
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=65.51 E-value=17 Score=28.10 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=50.6
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC---CCC--------HHHHHHHHHHHHH
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN---CPD--------PRIVTVCLEGLEN 396 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~---~~~--------~~v~~~al~~L~~ 396 (488)
+++.|.+-|+++++.++.+|+.+|..++.++++.....+.+.- ..+-.+.+ .++ ..||..|-+++..
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~--~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~l 127 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS--VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISA 127 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT--HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH--HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHH
Confidence 6778888899999999999999999999999888877776632 22322322 122 3577777777766
Q ss_pred HHHh
Q 011316 397 ILKA 400 (488)
Q Consensus 397 l~~~ 400 (488)
|+..
T Consensus 128 l~d~ 131 (140)
T 1vdy_A 128 IFSE 131 (140)
T ss_dssp HTCC
T ss_pred HhCc
Confidence 5543
No 161
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=61.67 E-value=1e+02 Score=28.51 Aligned_cols=126 Identities=16% Similarity=0.070 Sum_probs=64.8
Q ss_pred CCCChhHHHHHHHHHHHhcC---CCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh
Q 011316 84 RDDFPQLQFEAAWALTNIAS---GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 160 (488)
Q Consensus 84 ~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i 160 (488)
++.|+.++. +-..+..+.. -++......++...+..|+.++.++|+.=|.....+|..+-..-...|..+.. ..-
T Consensus 140 e~sWpHLql-VYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~ 217 (392)
T 2jak_A 140 EAAWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QIN 217 (392)
T ss_dssp CTTHHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHH
T ss_pred ccCChhHHH-HHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 334555443 2333444433 12333344555667889999999999999998888887775433333333322 122
Q ss_pred HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhcc
Q 011316 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHS 211 (488)
Q Consensus 161 ~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~L~~ll~~ 211 (488)
..+.+.+.......=....+..++.+..+.... ......-....++.+.+.
T Consensus 218 nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~ 269 (392)
T 2jak_A 218 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKV 269 (392)
T ss_dssp HHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTS
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccC
Confidence 334444433222222345566666666654222 222222234444555443
No 162
>3btp_B Protein VIRE1; TIM barrel, unique topology, novel fold, structural genomics structural proteomics center, ISPC, crown GALL tumor; 2.30A {Agrobacterium tumefaciens str}
Probab=61.61 E-value=2.7 Score=25.73 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=7.2
Q ss_pred CCCCCCCCC--ccccCCCCCCCCCCCCc
Q 011316 461 LPPGDATQA--GFGFAGNGLPVPSGGFN 486 (488)
Q Consensus 461 ~~~~~~~~~--~~~~~~~~~~~~~~~~~ 486 (488)
-.++++||+ .=.|.++| ||+||.
T Consensus 14 v~~~E~P~~~h~Ee~S~~h---~~nGFT 38 (63)
T 3btp_B 14 VLAVEKPQEIHKEELSDHH---QSNGFT 38 (63)
T ss_dssp -----------------CT---TTTTSC
T ss_pred ccCccchhhhhHHHhcccC---CCCCcc
Confidence 346677777 55789999 999994
No 163
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=57.37 E-value=1.2e+02 Score=28.09 Aligned_cols=235 Identities=10% Similarity=0.047 Sum_probs=123.8
Q ss_pred hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchh
Q 011316 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQ 276 (488)
Q Consensus 198 ~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~ 276 (488)
...++..|+.++.++|+.-|...-.+|..+-..-..... ++...+-..+...... ....-....+.+++.+..+...-
T Consensus 127 d~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~-~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~P 205 (403)
T 3fga_B 127 DQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALP 205 (403)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSS
T ss_pred CHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCC
Confidence 356788899999999999999888888877644433322 2322222334443322 22334456777777777653211
Q ss_pred hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
.+.--..-....|+.+.+.+.-.........++..+...++.....+ +..|++.--..++.-...-+.-+..+..
T Consensus 206 Lkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~Ele~iLe 280 (403)
T 3fga_B 206 LKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELEEILD 280 (403)
T ss_dssp CCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 00000000123344444444223333455555665655444432222 2222222112233322333444555666
Q ss_pred CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH-----HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHH
Q 011316 357 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE-----NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEN 431 (488)
Q Consensus 357 ~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~-----~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~ 431 (488)
..++.....+.. .+...+..++.+++-.|.+.|+.... +++...... .... .+..|.+
T Consensus 281 ~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~-----------IlPi-----i~p~L~~ 343 (403)
T 3fga_B 281 VIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAK-----------ILPI-----MFPSLYR 343 (403)
T ss_dssp TCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHH-----------HHHH-----HHHHHHH
T ss_pred hCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHH-----------HHHH-----HHHHHHH
Confidence 555555444332 46778888889999999988885542 222111100 1111 1444555
Q ss_pred h-hcCCCHHHHHHHHHHHHHhcCCC
Q 011316 432 L-QSHDNTEIYEKAVKILETYWVEE 455 (488)
Q Consensus 432 l-~~~~~~~v~~~a~~~l~~~~~~~ 455 (488)
. .+|=|+.|+..+..++.-+-+.+
T Consensus 344 ~~~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 344 NSKTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp TTSCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHccCHHHHHHHHHHHHHHHHhC
Confidence 4 45669999999999998776543
No 164
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=54.74 E-value=65 Score=24.96 Aligned_cols=77 Identities=12% Similarity=0.143 Sum_probs=57.7
Q ss_pred HHHHHHHHCCChHHHHhhcC------CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc
Q 011316 361 EQIKFLVSQGCIKPLCDLLN------CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS 434 (488)
Q Consensus 361 ~~~~~l~~~~~~~~L~~ll~------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~ 434 (488)
.....+++.|++..+-.-|+ -++..++...+.+|.++ + . -.+.+.++|.-+.+..+..
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----P-I-----------~~e~Lk~SglGkvv~~l~k 115 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----K-I-----------HKEHLVTSGVGKIVYFYSI 115 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----C-C-----------CHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----C-C-----------CHHHhhcCCCCcchhhhhc
Confidence 34567778888888888876 24568888888888776 1 1 1566888888888888865
Q ss_pred CC--CHHHHHHHHHHHHHhcC
Q 011316 435 HD--NTEIYEKAVKILETYWV 453 (488)
Q Consensus 435 ~~--~~~v~~~a~~~l~~~~~ 453 (488)
++ .++.+..|..+++++.+
T Consensus 116 ~~~et~~nk~la~~Li~~WsR 136 (145)
T 2xpp_A 116 NPKESKEVRASAKALVQKWTN 136 (145)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHH
Confidence 54 67899999999998654
No 165
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=54.46 E-value=52 Score=28.35 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc
Q 011316 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE 169 (488)
Q Consensus 91 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~ 169 (488)
+.-++..+.-++.+. ... +.+..++. .+.+.++..+-.++++++|+..+....+..+........++..+..
T Consensus 71 ~fP~lDllRl~~~~~-~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKL-PYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGC-SCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCC-chH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 455777777666622 221 23333333 3345678899999999999987766334444433224444544311
Q ss_pred -------cccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHHHHHhccCC
Q 011316 170 -------HAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 170 -------~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll~---------~~~~~v~~~al~~L~~l~~~~ 231 (488)
..+..++..++..+.|++-.. ..... .....+.+.+. ..+.+....++-+++++...+
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~----e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL----ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCT----THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccchH----HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 235667888888888887542 11111 22233334333 137788888888998887543
No 166
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=54.00 E-value=30 Score=27.15 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=51.3
Q ss_pred ChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH-HHHhhc---CCCHHHHHHHH
Q 011316 371 CIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQS---HDNTEIYEKAV 445 (488)
Q Consensus 371 ~~~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-l~~l~~---~~~~~v~~~a~ 445 (488)
++..|..-+.. +++.++..|+..|..+++.+... |...+.+...++. |..+.. +...+|+++..
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~-----------fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil 122 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPS-----------FQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRIL 122 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHH-----------HHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHH-----------HHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 45566666664 57778888999998888776543 4555554444543 555543 23568999999
Q ss_pred HHHHHhcCCCCC
Q 011316 446 KILETYWVEEDE 457 (488)
Q Consensus 446 ~~l~~~~~~~~~ 457 (488)
.++..+...-..
T Consensus 123 ~li~~Wa~~F~~ 134 (152)
T 3rru_A 123 NFIKTWSQGFPG 134 (152)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhCC
Confidence 999998876554
No 167
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=53.50 E-value=28 Score=26.51 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=60.2
Q ss_pred ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011316 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM 407 (488)
Q Consensus 328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 407 (488)
++|.|+..+++.+..+...++..|...- .. +++.+.+++.+.|..=.. ++|..++..-+..
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~----~~---------l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ----SI---------AMPHILTILQGNDIMWKY---WVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH----HH---------HHHHHHHHHHSSCHHHHH---HHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc----Hh---------hHHHHHHHHHcCChHHHH---HHHHHHHHcCCHH---
Confidence 5788999999999999888888887652 12 345555666766655333 3444444332211
Q ss_pred CCCCccchHHHHHHhhccHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCC
Q 011316 408 GNTGGVNLFAQAIDDAEGLEKIENLQSH-----DNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 408 ~~~~~~~~~~~~l~~~g~~~~l~~l~~~-----~~~~v~~~a~~~l~~~~~~ 454 (488)
....+. ..|..+..+ ...++.+.|..+|++||++
T Consensus 93 --------~~~~l~-----~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 93 --------NKQLVK-----SELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp --------HHHHHH-----HHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred --------HHHHHH-----HHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 123332 345666555 3678999999999999874
No 168
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=52.55 E-value=2.1e+02 Score=29.43 Aligned_cols=111 Identities=10% Similarity=0.068 Sum_probs=64.5
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--cccHhHHHHHHHHHHHhhcCC--CCC
Q 011316 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGK--PQP 193 (488)
Q Consensus 118 i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~v~~~a~~~L~~l~~~~--~~~ 193 (488)
.|.+...+.+.+..+...+..++.+|+.-.|.+.+.++. +++..+..-|.. -..+.-...++.++..++..- ...
T Consensus 341 ~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP-~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~ 419 (799)
T 1vsy_4 341 LNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYD-KILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKL 419 (799)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHH-HHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTT
T ss_pred HHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehH-HHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcc
Confidence 455555667789999999999999999877744444322 233444444422 133444455666666555422 111
Q ss_pred ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011316 194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229 (488)
Q Consensus 194 ~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~ 229 (488)
-......++..++.-+..+|+.--..++..+..++.
T Consensus 420 yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 420 YRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp GGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 122444555555566667777777777777776653
No 169
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=51.76 E-value=39 Score=31.60 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-
Q 011316 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN- 168 (488)
Q Consensus 91 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~- 168 (488)
+.-++..+.-++...+ .. +.+..++ ..+.+..+..+-.++++++|+.......+..+........++..+.
T Consensus 243 ~FPaLDLLRl~v~~p~-~~------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLP-YS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCS-CG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCc-hH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 5557777777666322 11 2233333 3344567889999999999998776532333322222445555542
Q ss_pred ------ccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHHHHHhccCC
Q 011316 169 ------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 169 ------~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll~---------~~~~~v~~~al~~L~~l~~~~ 231 (488)
...+..++..++..+.|++... .... ......+.+++. ..+.+....++-+|+++....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~----~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1235567778888888887542 1111 123344444444 257889999999999998543
No 170
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=51.29 E-value=2.8e+02 Score=30.40 Aligned_cols=264 Identities=12% Similarity=0.117 Sum_probs=122.7
Q ss_pred CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH----H------hCCCHHHHHHhhC-C-CCHHHHHHHHHHHh
Q 011316 74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV----I------DHGAVPIFVRLLS-S-PTDDVREQAVWALG 141 (488)
Q Consensus 74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~----~------~~g~i~~L~~lL~-~-~~~~~~~~a~~~L~ 141 (488)
++..|.++|..+ +.+....+.+|+++.- +++....+ + +...+|.+++++- + ...++++ ++..|.
T Consensus 193 v~~~L~~lL~~~--~~L~~~iLdaLs~L~L-s~~~l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~e-vI~~LR 268 (1323)
T 3s4w_B 193 VGKELGELLVQN--TSLTVPILDVFSSLRL-DPNFLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLE-VIAELR 268 (1323)
T ss_dssp HHHHHHHHHHHC--STTHHHHHHHHHHSCC-CHHHHHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHH-HHHHHH
T ss_pred HHHHHHHHHhcC--cchHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHH-HHHHHH
Confidence 455677777664 4678888889999887 55443333 2 2245788888653 3 2222222 222222
Q ss_pred h-hhCCC---ch----hHHHHHhcC--------------ChHHHHHHhcc--cccHhHHHHHHHHHHHhhcCCCCCChhh
Q 011316 142 N-VAGDS---PK----CRDLVLSNG--------------ALMPLLAQFNE--HAKLSMLRNATWTLSNFCRGKPQPLFEQ 197 (488)
Q Consensus 142 ~-l~~~~---~~----~~~~~~~~~--------------~i~~l~~~l~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 197 (488)
. +-... |. ....+...| ...-++..+.. ..+..+...-+..+.+......
T Consensus 269 ~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~------ 342 (1323)
T 3s4w_B 269 ENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE------ 342 (1323)
T ss_dssp HHHHCC----------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTT------
T ss_pred HHcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccc------
Confidence 1 11000 00 000000000 01112333311 1133444444555555544321
Q ss_pred hhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCCchhHH----------HHHHhCCHHHHHHh----cCCCCcchHhHH
Q 011316 198 TRPALPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQ----------AVIEAGVCPRLVEL----LRHPSPSVLIPA 262 (488)
Q Consensus 198 ~~~~~~~L~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~----------~~~~~~~l~~L~~l----L~~~~~~v~~~a 262 (488)
...+..++-++ .+.+...+..+-.++.+-.....-..+ .+++ ..++.++.+ +.+.++.++..+
T Consensus 343 -hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL~-~~f~siL~La~~Ll~S~~~~v~~Fg 420 (1323)
T 3s4w_B 343 -HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLK-DICPSILLLAQTLFHSQDQRIILFG 420 (1323)
T ss_dssp -CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHT-TSHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred -cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 13333333322 333444556666666655543221111 1121 445555543 567778888777
Q ss_pred HHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011316 263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE 342 (488)
Q Consensus 263 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 342 (488)
...-..+....+...+ ..++..|+..+.++ +..-...|+.+|..++..++........ .+..+++.+.+-+..
T Consensus 421 ~~lY~~lF~~fd~~~q----qeVl~~Lv~hi~sg-~~~eVd~ALdvL~~L~~~~~~~l~~~a~--~l~giLD~l~~l~~~ 493 (1323)
T 3s4w_B 421 SLLYKYAFKFFDTYCQ----QEVVGALVTHVCSG-TEAEVDTALDVLLELIVLNASAMRLNAA--FVKGILDYLENMSPQ 493 (1323)
T ss_dssp HHHHHHHHHSSCHHHH----HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHCHHHHHHTHH--HHHGGGGGGGGCCHH
T ss_pred HHHHHHHHHhccchhH----HHHHHHHHhhhcCC-CcHHHHHHHHHHHHHHhcCHHHHhHHHH--HHHHHHHhhcCCCHH
Confidence 6665555554443211 23456666666555 3333455888888888755654443222 233344444444433
Q ss_pred HHHHHHHHHHHhcc
Q 011316 343 IKKEAAWAISNATS 356 (488)
Q Consensus 343 v~~~a~~aL~~l~~ 356 (488)
-.......|+.++.
T Consensus 494 QiRklf~iL~~laf 507 (1323)
T 3s4w_B 494 QIRKIFCILSTLAF 507 (1323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 33445666666553
No 171
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=51.05 E-value=1.7e+02 Score=27.86 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=91.3
Q ss_pred ccHHHHHHHhc-C-----CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011316 30 ESLPAMVAGVW-S-----DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103 (488)
Q Consensus 30 ~~i~~l~~~L~-s-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~ 103 (488)
..++.+-+.|. + -|++. .+..+.++++.. ..+.+.+-=-++.+.+.|+++. +.+...|+.++.
T Consensus 73 ~ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~---~Fd~VLevysve~i~~aL~S~~-~~l~~~~ckVI~---- 141 (500)
T 3vld_A 73 PLLATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMA---DFDDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE---- 141 (500)
T ss_dssp HHHHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHS---CHHHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCccccccCHHH---HHHHHHHHHhcC---CHHHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc----
Confidence 34555566662 2 23443 445555555433 2455566667888999999987 899999998887
Q ss_pred CCchhhHHHHhCCCHHHHHHhhCCCCH--H-HHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011316 104 GTSENTRVVIDHGAVPIFVRLLSSPTD--D-VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180 (488)
Q Consensus 104 ~~~~~~~~~~~~g~i~~L~~lL~~~~~--~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~ 180 (488)
.+..+..+...+++..++.++-.++. . +....=.++..++.+ .-++..+.+. .. +++..+++..++.+....+
T Consensus 142 -~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd-eLirrril~n-nl-~lL~~vK~~~~~i~~sRLL 217 (500)
T 3vld_A 142 -NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTD-ELIRRRLFDN-NL-PYLVSVKGRMETVSFVRLI 217 (500)
T ss_dssp -TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTT-TH-HHHHHHHHHCCHHHHHHHH
T ss_pred -ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch-HHHHHHHHHH-hH-HHHHHHhcCCCceeHHHHH
Confidence 34566778888999999998766432 3 666566667777533 3245566653 33 5555554556666666666
Q ss_pred HHHHHhhcC
Q 011316 181 WTLSNFCRG 189 (488)
Q Consensus 181 ~~L~~l~~~ 189 (488)
..+.-+...
T Consensus 218 dll~il~~~ 226 (500)
T 3vld_A 218 DFLTIEFQF 226 (500)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 666655444
No 172
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=50.53 E-value=35 Score=31.22 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-
Q 011316 91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN- 168 (488)
Q Consensus 91 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~- 168 (488)
+.-++..+.-++...+ .. +.+..++ ..+.+..+..+-.++++++|+..+....+..+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~-~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLP-YS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCS-CG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCC-hH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 5557777776665322 11 2333333 3344567889999999999998776532333322111334444441
Q ss_pred ------ccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHHHHHhccCC
Q 011316 169 ------EHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH---------SNDDEVLTDACWALSYLSDGT 231 (488)
Q Consensus 169 ------~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~L~~ll~---------~~~~~v~~~al~~L~~l~~~~ 231 (488)
...+..++..++..+.|++... .... ......+.+++. ..+.+....++-+++++....
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~ 328 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 328 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC----TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccch----HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1235567778888888887542 1111 223344555554 358889999999999998543
No 173
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=50.04 E-value=1.1e+02 Score=25.49 Aligned_cols=134 Identities=7% Similarity=-0.077 Sum_probs=78.6
Q ss_pred ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011316 169 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 247 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L 247 (488)
.+...+.+..++..+....... ....++.+-.++. .++..+....+.+++.+....+.. ..+.+
T Consensus 65 ~s~~~E~r~la~~~l~~~~~~~-------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~--------~~~~i 129 (220)
T 2b6c_A 65 QKTEREYQYVAIDLALQNVQRF-------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE--------LPTIF 129 (220)
T ss_dssp TSSSHHHHHHHHHHHHHTGGGC-------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG--------HHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhhC-------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH--------HHHHH
Confidence 4455666666766666543211 1122333334443 356777766666666655433321 33567
Q ss_pred HHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011316 248 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325 (488)
Q Consensus 248 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 325 (488)
.....+++.-+++.|+..+..... ...... .++.+-..+.++ +.-|++...|+|..++..+++....++.
T Consensus 130 ~~W~~s~~~w~rR~ai~~~l~~~~--~~~~~~-----~~~i~~~~~~d~-~~yV~kavgW~Lr~~~k~~~~~v~~fl~ 199 (220)
T 2b6c_A 130 ALFYGAENFWNRRVALNLQLMLKE--KTNQDL-----LKKAIIYDRTTE-EFFIQKAIGWSLRQYSKTNPQWVEELMK 199 (220)
T ss_dssp HHHTTCSSHHHHHHHHHTTTTCGG--GCCHHH-----HHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHH--CCCHHH-----HHHHHHHhCCCh-HHHHHHHHHHHHHHHHhhCHHHHHHHHh
Confidence 788888888888888664422211 111111 234444466777 8899999999999999987886655553
No 174
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=45.26 E-value=29 Score=32.41 Aligned_cols=131 Identities=10% Similarity=0.044 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHhCCHHHHH-HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc
Q 011316 217 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLV-ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 295 (488)
Q Consensus 217 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~ 295 (488)
+-.++..++-+....... +.+..++ ..+.+..+..+..++++++|+..+.......+........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 555666666666443321 1222222 23344567788899999999988543233333222234455554421
Q ss_pred -------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---------cCChhHHHHHHHHHHHhccC
Q 011316 296 -------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL---------NAEFEIKKEAAWAISNATSG 357 (488)
Q Consensus 296 -------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~---------~~~~~v~~~a~~aL~~l~~~ 357 (488)
..+..++..++..+-|++........ +......+..++. ..+.+....++.||++++..
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 11567888888888899863111000 1123455666665 24788889999999999853
No 175
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=44.46 E-value=25 Score=32.15 Aligned_cols=130 Identities=10% Similarity=0.052 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhccCCchhHHHHHHhCCHHHHH-HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-
Q 011316 217 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLV-ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT- 294 (488)
Q Consensus 217 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~- 294 (488)
+-.++..++-+....... +.+..++ ..+.+..+..+..++++++|+..+.......+.+......+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 455666666655443311 1222222 2233456778889999999998854423333322112233343331
Q ss_pred ------ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---------cCChhHHHHHHHHHHHhcc
Q 011316 295 ------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL---------NAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 295 ------~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~---------~~~~~v~~~a~~aL~~l~~ 356 (488)
...+..++..++..+-|++........ +......+.+++. ..+++....++.||++++.
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 111567888888888899863111000 0223455666665 3478889999999999985
No 176
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=43.69 E-value=27 Score=30.16 Aligned_cols=99 Identities=10% Similarity=0.000 Sum_probs=61.0
Q ss_pred ChhHHHHHHHHHHHhcCCCch-hhHHHHhCCCHHHHHHhh----CC----CCHHHHHHHHHHHhhhhCCCchhHHHHHhc
Q 011316 87 FPQLQFEAAWALTNIASGTSE-NTRVVIDHGAVPIFVRLL----SS----PTDDVREQAVWALGNVAGDSPKCRDLVLSN 157 (488)
Q Consensus 87 ~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~lL----~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 157 (488)
.+..+..++++++|+.. ++. .+..+........++..+ .+ .+..++-.++..+.|++...-..+. +.
T Consensus 103 ~~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~ 178 (253)
T 3gae_A 103 NITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DL 178 (253)
T ss_dssp SHHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CT
T ss_pred chhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hH
Confidence 38899999999999998 555 566554432334444433 21 3567888899999998732100000 11
Q ss_pred CChHHHHHHhcc--------cccHhHHHHHHHHHHHhhcC
Q 011316 158 GALMPLLAQFNE--------HAKLSMLRNATWTLSNFCRG 189 (488)
Q Consensus 158 ~~i~~l~~~l~~--------~~~~~v~~~a~~~L~~l~~~ 189 (488)
.....++..+.. ..|++....++.+++++...
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 223445555531 24778888888888888754
No 177
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=42.78 E-value=33 Score=24.83 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=32.4
Q ss_pred HHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhcCC
Q 011316 417 AQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 417 ~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~ 454 (488)
.+.|.+.+.=..+..|..+ ++++|+..|..++..+-..
T Consensus 47 ~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 47 IQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHHH
Confidence 6778889988999999876 8999999999999876553
No 178
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=42.68 E-value=80 Score=25.16 Aligned_cols=76 Identities=8% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHCCChHHHHhhcC------CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC
Q 011316 363 IKFLVSQGCIKPLCDLLN------CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD 436 (488)
Q Consensus 363 ~~~l~~~~~~~~L~~ll~------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~ 436 (488)
...+++.|++..+-..|. -++..++...+.+|..+=-. .+.+.++|.=+.+..+..++
T Consensus 69 ~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~----------------~e~Lk~SglGkvV~~l~k~~ 132 (170)
T 3nfq_A 69 ADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPVK----------------TEHLKESGLGRVVIFYTKSK 132 (170)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC----------------HHHHHHHSHHHHHHHHHHCT
T ss_pred HHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCCC----------------HHHHhhCCCCceeeehhcCC
Q ss_pred --CHHHHHHHHHHHHHhcCC
Q 011316 437 --NTEIYEKAVKILETYWVE 454 (488)
Q Consensus 437 --~~~v~~~a~~~l~~~~~~ 454 (488)
.++++..|..+++++...
T Consensus 133 ~et~~nkrla~~Li~~WsRp 152 (170)
T 3nfq_A 133 RVEAQLARLAEKLIAEWTRP 152 (170)
T ss_dssp TSCHHHHHHHHHHHHHHTCC
T ss_pred cccHHHHHHHHHHHHHHHHH
No 179
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=39.53 E-value=2.1e+02 Score=25.58 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=100.1
Q ss_pred chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH-Hhc----c---cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 011316 257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD-LLT----Q---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328 (488)
Q Consensus 257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~-lL~----~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 328 (488)
.+++..+..+.......+.. +.+ ....++.+++ +|. + ..++++-.....++..+...-.+....+.+. +
T Consensus 44 ~vKkeiLkLiet~i~~~~d~-~~v-~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~-V 120 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDP-QMV-AENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDA-V 120 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCH-HHH-HHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHH-HHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHH-H
Confidence 35666777777666544332 222 2345666654 331 1 1134555555555555544333334444442 5
Q ss_pred hHHHHHHHhcC---ChhHHHHHHHHHHHhccCC-------CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011316 329 IGPLVNLLLNA---EFEIKKEAAWAISNATSGG-------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 398 (488)
Q Consensus 329 l~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~ 398 (488)
+..=+++++.+ -|+.|.+=...|.++..++ ++++.+. +++.++-..+++++++.+.++.++..++
T Consensus 121 Fe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll 195 (321)
T 1w9c_A 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLL 195 (321)
T ss_dssp HHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 55566677753 6778877777777776544 3333333 4677777889999999999999998887
Q ss_pred HhhhhhhccCCCCccchHHHHHHhhccHHHHHHh----hcCCCHHHHHHHHHHHHHhcCC
Q 011316 399 KAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL----QSHDNTEIYEKAVKILETYWVE 454 (488)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~~ 454 (488)
..-.+... +...|-+.-.++.+.+. .++.+.-....-..+|.++|.-
T Consensus 196 ~n~~~~~~---------~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~~iL~~lf~~ 246 (321)
T 1w9c_A 196 QNVAQEEA---------AAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASILAYMFNL 246 (321)
T ss_dssp HHHHHCHH---------HHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcChH---------HHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHHHHHHHHHHH
Confidence 66543111 23333333334444443 3333333344446666677643
No 180
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=36.85 E-value=43 Score=26.23 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=51.4
Q ss_pred ChHHHHHHHhc-CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChH-HHHhhcCC---CCHHHHHHHHHHHHHHHH
Q 011316 328 IIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK-PLCDLLNC---PDPRIVTVCLEGLENILK 399 (488)
Q Consensus 328 ~l~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~~~-~L~~ll~~---~~~~v~~~al~~L~~l~~ 399 (488)
++..|.+-+.. .++.++..|+..|-.++.++.......+....++. .|..++.. .+..|+..++..+..-..
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 45566666664 47778888999999999999887777766655665 36666653 234788888888776654
No 181
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=34.30 E-value=2e+02 Score=23.88 Aligned_cols=141 Identities=9% Similarity=-0.044 Sum_probs=86.9
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011316 76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLV 154 (488)
Q Consensus 76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~ 154 (488)
..+..+.+++. .+.+..|+..+........+ .-++.+-.++.. ++..+....+.+++.+....+..
T Consensus 58 ~~~~~L~~s~~-~E~r~la~~~l~~~~~~~~~--------~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 58 QEIEAYYQKTE-REYQYVAIDLALQNVQRFSL--------EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHHTSSS-HHHHHHHHHHHHHTGGGCCH--------HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHHcCch-hHHHHHHHHHHHHHHhhCCH--------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 44556667666 78899999888876532111 112333344443 67788777666677665433321
Q ss_pred HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh
Q 011316 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK 234 (488)
Q Consensus 155 ~~~~~i~~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 234 (488)
..+.+.... .+++.-+++.++..+..... .......++.+-.++.+++.-|+..+.|+|..++..+++.
T Consensus 125 ----~~~~i~~W~-~s~~~w~rR~ai~~~l~~~~------~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~ 193 (220)
T 2b6c_A 125 ----LPTIFALFY-GAENFWNRRVALNLQLMLKE------KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQW 193 (220)
T ss_dssp ----HHHHHHHHT-TCSSHHHHHHHHHTTTTCGG------GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ----HHHHHHHHH-cCCCHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHH
Confidence 123344445 77788888877764422111 1112334555555778889999999999999999888776
Q ss_pred HHHHHH
Q 011316 235 IQAVIE 240 (488)
Q Consensus 235 ~~~~~~ 240 (488)
...++.
T Consensus 194 v~~fl~ 199 (220)
T 2b6c_A 194 VEELMK 199 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 665554
No 182
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=33.16 E-value=2.2e+02 Score=23.92 Aligned_cols=149 Identities=7% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHH-HHHHHhccCCchhHHHHHH
Q 011316 162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC-WALSYLSDGTNDKIQAVIE 240 (488)
Q Consensus 162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al-~~L~~l~~~~~~~~~~~~~ 240 (488)
.++..|-.+...+.+..|+..+..................++ ..++..+....+ .+++.+....+
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~------~~~nWd~~D~~a~~~~g~~~~~~p-------- 129 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELIV------TKSWWDSVDSIVPTFLGDIFLKHP-------- 129 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHT------SSCCHHHHHHHTTTHHHHHHHHCG--------
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc------cCCChHHHHHhhHHHHHHHHHHCH--------
Q ss_pred hC-CHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHH
Q 011316 241 AG-VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 319 (488)
Q Consensus 241 ~~-~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~ 319 (488)
. ..+.+...+.++++-+++.|+..+.......+.... ...+...+.++ +.-|++...|+|..++..+++.
T Consensus 130 -~~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~~~-------~~~i~~~~~d~-~~yV~kAvgW~Lr~~~k~~p~~ 200 (232)
T 3jxy_A 130 -ELISAYIPKWIASDNIWLQRAAILFQLKYKQKMDEELL-------FWIIGQLHSSK-EFFIQKAIGWVLREYAKTNPDV 200 (232)
T ss_dssp -GGGGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCCHHHH-------HHHHHHHTTCC-CHHHHHHHHHHHHHHTTTCHHH
T ss_pred -HHHHHHHHHHhcCCchHHHHHHHHHHHHHHhCCCHHHH-------HHHHHHhcCCH-HHHHHHHHHHHHHHHHhhCHHH
Q ss_pred HHHHHHcCChHHHH
Q 011316 320 IQAIIEAGIIGPLV 333 (488)
Q Consensus 320 ~~~l~~~~~l~~L~ 333 (488)
...+++..-++.+.
T Consensus 201 v~~fl~~~~l~~~~ 214 (232)
T 3jxy_A 201 VWEYVQNNELAPLS 214 (232)
T ss_dssp HHHHHHHSCCCHHH
T ss_pred HHHHHHHCCCCHHH
No 183
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=31.61 E-value=3.5e+02 Score=25.79 Aligned_cols=189 Identities=14% Similarity=0.132 Sum_probs=105.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCCh-h-HHHHHHHHHHHhcCCCch
Q 011316 30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFP-Q-LQFEAAWALTNIASGTSE 107 (488)
Q Consensus 30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-~-v~~~a~~~L~~l~~~~~~ 107 (488)
=.++.+++.|+|+++.+...|+..+.. ..+...+..++++..+++++-+.+.+ . +....=.++..++. +.=
T Consensus 116 ysve~i~~aL~S~~~~l~~~~ckVI~~------s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss-deL 188 (500)
T 3vld_A 116 YSAEDLVKALRSEIDPLKVAACRVIEN------SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST-DEL 188 (500)
T ss_dssp SCHHHHHHHHTSSCHHHHHHHHHHHHT------CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT-SHH
T ss_pred CCHHHHHHHHhcCChHHHHHHHHHhcc------cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc-hHH
Confidence 457788999999999999999888872 45566777889999999998776533 2 44444456666654 443
Q ss_pred hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC--chhHHHHHhcCChHHHHHHhcccccHhHHHHHHH----
Q 011316 108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS--PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW---- 181 (488)
Q Consensus 108 ~~~~~~~~g~i~~L~~lL~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~~v~~~a~~---- 181 (488)
.|..+.+. ..+.+...=++.++.+....+..+.-+...- +++.+.+.--+ -..+.+.+ + |+-+....+.
T Consensus 189 irrril~n-nl~lL~~vK~~~~~i~~sRLLdll~il~~~i~~~eF~~~Lfi~~-~~Ei~k~~-d--Dil~fI~ii~yYtk 263 (500)
T 3vld_A 189 IRRRLFDN-NLPYLVSVKGRMETVSFVRLIDFLTIEFQFISGPEFKDIIFCFT-KEEILKSV-E--DILVFIELVNYYTK 263 (500)
T ss_dssp HHHHHHTT-THHHHHHHHHHCCHHHHHHHHHHHHHHHTTCCTTTCCHHHHCCC-HHHHHHHT-T--SHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hHHHHHHHhcCCCceeHHHHHHHHHHHhcccCcccCCcceeecc-HHHHHhhh-c--chHHHHHHHHHHHH
Confidence 56666654 4566655554566666665666555554332 33333322111 11122222 1 3222222222
Q ss_pred HHHHhhcCCCCCC-hhhhhchHHHHHHhhccC--ChhHH----HHHHHHHHHhccCC
Q 011316 182 TLSNFCRGKPQPL-FEQTRPALPALERLIHSN--DDEVL----TDACWALSYLSDGT 231 (488)
Q Consensus 182 ~L~~l~~~~~~~~-~~~~~~~~~~L~~ll~~~--~~~v~----~~al~~L~~l~~~~ 231 (488)
.+..+.. ....+ .....+.++.+.++..+. .++++ ......++.++..+
T Consensus 264 Ll~~~~~-~~~~w~l~~i~p~l~~~~~ly~~~d~~~dv~~f~~s~l~~lfa~lSyl~ 319 (500)
T 3vld_A 264 FLLEIRN-QDKYWALRHVKKILPVFAQLFEDTENYPDVRAFSTNCLLQLFAEVSRIE 319 (500)
T ss_dssp HHHHHHH-TTCGGGHHHHGGGHHHHHHHHHCTTTCHHHHHHSHHHHHHHHHHHTTSS
T ss_pred HHHHhcc-cchHHHHHHhHHHHHHHHHHhcCchhhhHHHHHhHHHHHHHHHHHhhcc
Confidence 2222211 11122 224577888888888653 45554 44555566666544
No 184
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=30.03 E-value=2.5e+02 Score=25.06 Aligned_cols=162 Identities=11% Similarity=0.098 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh-cC---CCCcchH-----hHHHHHHhHhhcCCchhhHHHhhCCC
Q 011316 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LR---HPSPSVL-----IPALRTVGNIVTGDDMQTQCIINHQA 285 (488)
Q Consensus 215 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~---~~~~~v~-----~~a~~~L~~l~~~~~~~~~~~~~~~~ 285 (488)
.++...+..+.......++. +.+.+ ..++.|+.. |. +..|..| .....++..+-..-......+++ .+
T Consensus 44 ~vKkeiLkLiet~i~~~~d~-~~v~~-~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~-~V 120 (321)
T 1w9c_A 44 TVKRETLKLISGWVSRSNDP-QMVAE-NFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD-AV 120 (321)
T ss_dssp HHHHHHHHHHHHHHTTCSCH-HHHHH-HTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHcCCCH-HHHHH-HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH-HH
Confidence 35556666666555544332 33333 566766653 32 2223333 33333333332222222222333 34
Q ss_pred hHHHHHHhccc--chhhHHHHHHHHHHHHhcCCHHHHHHHH---HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC--
Q 011316 286 LPCLLDLLTQN--YKKSIKKEACWTISNITAGNVNQIQAII---EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG-- 358 (488)
Q Consensus 286 ~~~L~~lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~---~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-- 358 (488)
++.=+.+++.. +-|+.|..-...|..+..+.-...-.+- -..+++.++...++...++...++.++..+..+-
T Consensus 121 Fe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~ 200 (321)
T 1w9c_A 121 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 200 (321)
T ss_dssp HHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhc
Confidence 45555566531 2678888777777777653211111100 0125667888888889999999988887776543
Q ss_pred CHHHHHHHHHCCChHHHHhhc
Q 011316 359 SNEQIKFLVSQGCIKPLCDLL 379 (488)
Q Consensus 359 ~~~~~~~l~~~~~~~~L~~ll 379 (488)
.++....+.++-....|.+++
T Consensus 201 ~~~~~~~Fy~~fy~~il~~if 221 (321)
T 1w9c_A 201 EEAAAQSFYQTYFCDILQHIF 221 (321)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 234555555554555554443
No 185
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=29.80 E-value=1.3e+02 Score=23.16 Aligned_cols=71 Identities=6% Similarity=-0.027 Sum_probs=50.0
Q ss_pred ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011316 285 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356 (488)
Q Consensus 285 ~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~ 356 (488)
++..+.+.+... .+.-|..+++.+-.++..........+..++.+.+...+...++.+|......+...-.
T Consensus 44 Iv~~i~~~i~k~-~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 44 FVDAIESRIEKC-MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccC-CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 455566666666 77888889999888887322224456667777888787777788888888777776653
No 186
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=29.06 E-value=1.4e+02 Score=25.25 Aligned_cols=76 Identities=7% Similarity=-0.099 Sum_probs=49.9
Q ss_pred HHHHHHhcCCCHHHHHHHHH----HHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011316 33 PAMVAGVWSDDRNIQLDATT----QFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN 108 (488)
Q Consensus 33 ~~l~~~L~s~~~~~~~~a~~----~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~ 108 (488)
+.+.+.+.|++.=.+..|.. .+..+..+. ..... ....++.+...+.++. ..++....|+|..+...+++.
T Consensus 111 ~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~--~~~~~--~~~~l~~i~~~l~~~~-~~v~kAi~W~Lr~~gk~~~~~ 185 (235)
T 1t06_A 111 DVADKWIASGDELKMSAGWSCYCWLLGNRKDNA--FSESK--ISDMLEMVKDTIHHSP-ERTKSAMNNFLNTVAISYVPL 185 (235)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGG--SCHHH--HHHHHHHHHHHGGGSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHhhccccC--cChhh--HHHHHHHHHHHccCCh-HHHHHHHHHHHHHHHhhCHHH
Confidence 35677778898888877777 444421111 01111 1224555666788888 899999999999999877776
Q ss_pred hHHHH
Q 011316 109 TRVVI 113 (488)
Q Consensus 109 ~~~~~ 113 (488)
....+
T Consensus 186 ~~~al 190 (235)
T 1t06_A 186 HEKAV 190 (235)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 187
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=28.75 E-value=2e+02 Score=22.17 Aligned_cols=82 Identities=11% Similarity=0.197 Sum_probs=54.8
Q ss_pred HHHhcCCCchhhHHHHhCCCHHHHHHhhCC------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-
Q 011316 98 LTNIASGTSENTRVVIDHGAVPIFVRLLSS------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH- 170 (488)
Q Consensus 98 L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~- 170 (488)
+..... .......+++.|++..+-..|+. ++..+|+..+.+|.++-.+ ++.+.+.|. ...+-.+.++
T Consensus 44 V~~~l~-k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~----~e~Lk~Sgl-Gkvv~~l~k~~ 117 (145)
T 2xpp_A 44 ISDILM-SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH----KEHLVTSGV-GKIVYFYSINP 117 (145)
T ss_dssp HHHHHT-CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC----HHHHHHHCH-HHHHHHHHHCT
T ss_pred HHHHHh-hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC----HHHhhcCCC-CcchhhhhcCC
Confidence 333333 45667888899999999999875 6789999999999998422 455666554 4444444343
Q ss_pred -ccHhHHHHHHHHHHH
Q 011316 171 -AKLSMLRNATWTLSN 185 (488)
Q Consensus 171 -~~~~v~~~a~~~L~~ 185 (488)
+.++.++.|-..+..
T Consensus 118 ~et~~nk~la~~Li~~ 133 (145)
T 2xpp_A 118 KESKEVRASAKALVQK 133 (145)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 345666666655544
No 188
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=27.75 E-value=3.7e+02 Score=27.65 Aligned_cols=108 Identities=8% Similarity=0.016 Sum_probs=70.6
Q ss_pred HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc---CChhHHHHHHHHHHHhcc---CCchhH
Q 011316 162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS---NDDEVLTDACWALSYLSD---GTNDKI 235 (488)
Q Consensus 162 ~l~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~---~~~~v~~~al~~L~~l~~---~~~~~~ 235 (488)
+++..-..+.+..+...+..++.+|+.-.|........+++..+...|.. ..+--...++.++..++. ..+...
T Consensus 342 p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr 421 (799)
T 1vsy_4 342 NIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYR 421 (799)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGG
T ss_pred HHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccH
Confidence 33333337778888999999999999877666677778888888888876 445555666777766652 111122
Q ss_pred HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011316 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271 (488)
Q Consensus 236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~ 271 (488)
.++. .++..++.-++.+++.-...++..+..++.
T Consensus 422 ~hl~--~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 422 VHIT--NVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp GHHH--HHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 2222 345555555677777766777777777764
No 189
>1f59_C NSP1P, FXFG nucleoporin repeats; protein-protein complex, transport protein receptor; 2.80A {Saccharomyces cerevisiae} SCOP: j.70.1.1
Probab=24.72 E-value=73 Score=15.74 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=9.8
Q ss_pred ccccCCCCCCCCCCCCcCC
Q 011316 470 GFGFAGNGLPVPSGGFNFG 488 (488)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~ 488 (488)
.||............|.||
T Consensus 9 sfg~~~~~~~~~~~afsfg 27 (28)
T 1f59_C 9 SFGXXXXXXXXXXXAFSFG 27 (28)
T ss_dssp CSSSCCCCCCC---CCCC-
T ss_pred cccccccccccceeeeecc
Confidence 5666666655666778886
No 190
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=23.12 E-value=2.2e+02 Score=31.10 Aligned_cols=129 Identities=10% Similarity=-0.004 Sum_probs=72.4
Q ss_pred ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011316 169 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248 (488)
Q Consensus 169 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~ 248 (488)
.+.++.++..+......+.... .......++..|+..+-+++..-...|+.+|..++...+....... -.+..++
T Consensus 410 ~S~~~~v~~Fg~~lY~~lF~~f---d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a--~~l~giL 484 (1323)
T 3s4w_B 410 HSQDQRIILFGSLLYKYAFKFF---DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNA--AFVKGIL 484 (1323)
T ss_dssp TSSSHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTH--HHHHGGG
T ss_pred hCCCHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHH--HHHHHHH
Confidence 5667777777766665555543 1233467778888877777666677799999988876544322211 1234444
Q ss_pred HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH
Q 011316 249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303 (488)
Q Consensus 249 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~ 303 (488)
..+.+-+..-.+....+++.++..........+.....-.+-+.|.++ +...|+
T Consensus 485 D~l~~l~~~QiRklf~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~-~~~~Kr 538 (1323)
T 3s4w_B 485 DYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSST-VFKYKL 538 (1323)
T ss_dssp GGGGGCCHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCS-SHHHHH
T ss_pred HhhcCCCHHHHHHHHHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCC-chhhhh
Confidence 455554444455667888888763321111012222333444556666 555554
No 191
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=22.40 E-value=1.6e+02 Score=26.26 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=32.4
Q ss_pred HHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011316 417 AQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV 453 (488)
Q Consensus 417 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 453 (488)
.+.|.+.++-..+..|..|++++|+..|..++..+-.
T Consensus 38 ~~~L~~T~IG~~Vn~lrkh~~~~v~~~Ak~Li~~WK~ 74 (309)
T 1pqv_S 38 EKLLRETKVGVEVNKFKKSTNVEISKLVKKMISSWKD 74 (309)
T ss_pred HHHHHhCChhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 6778889988999999999999999999999987654
No 192
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=21.23 E-value=1.6e+02 Score=22.61 Aligned_cols=66 Identities=5% Similarity=-0.014 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011316 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310 (488)
Q Consensus 244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~ 310 (488)
+..+.+.+....+.-+..++..+-.++..........+..++.+.+....... ++.+|......+.
T Consensus 45 v~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~-d~~~r~k~~rL~~ 110 (144)
T 1sz9_A 45 VDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLV-DNTTRTKLINMFK 110 (144)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTS-CHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 34455555556678888889888888875544445556667777777766655 5666665555444
No 193
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=20.22 E-value=3.6e+02 Score=22.02 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=70.4
Q ss_pred ChHHHHHHhcc-----cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccC
Q 011316 159 ALMPLLAQFNE-----HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDG 230 (488)
Q Consensus 159 ~i~~l~~~l~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~v~~~al~~L~~l~~~ 230 (488)
.+|.++..+.+ -.|.............+..++.-........++|.++.++-.. ...+|..|...+..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 35555555421 1256677777888888888876666667788888888876432 237999999999999854
Q ss_pred CchhHHHHHHhCCHHHHHHhcCCCC--cchHhHHHHHHhHhh
Q 011316 231 TNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIV 270 (488)
Q Consensus 231 ~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~ 270 (488)
..+... -++..+...+.+.+.+++ .....-|+..|..+.
T Consensus 121 ~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 121 YSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred hCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 332212 223356667777766543 344555666555553
Done!