BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011317
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 309 LFDGTSKLQLQELDLSNLPHLSD---NGILTLATCRVPISELRVRQCPLIGDTSVIALAS 365
L DG + EL LS + H++ +G++ LA+ +L R C L+G ++ +
Sbjct: 118 LVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNC-LVGANLLVKIGD 176
Query: 366 MLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 397
+ D + D Y GG T L RW+
Sbjct: 177 FGMSRD------VYSTDYYRVGGHTMLPIRWM 202
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 103/242 (42%), Gaps = 27/242 (11%)
Query: 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDG 271
L ++ VC RW L ++ ++ ++ +DL + +S +L+ L L+G
Sbjct: 30 LKVSGVCKRWYRLASDESLWQTLDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 89
Query: 272 SDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSD 331
+SD V+ L ++LV+L+L GC ++ + L S+ L EL+LS ++
Sbjct: 90 LRLSDPIVNTLAKN--SNLVRLNLSGCSGFSEFALQTLLSSCSR--LDELNLSWCFDFTE 145
Query: 332 NGI-LTLATCRVPISELR----------------VRQCPLIGDTSVIALASMLVDD---D 371
+ + +A I++L VR+CP + ++ + ML +D +
Sbjct: 146 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD-LSDSVMLKNDCFQE 204
Query: 372 RWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNV 431
+ + ++ L L C I L+ P L+ L V G V L L + P L +
Sbjct: 205 FFQLNYLQHLSLSRCYDIIPETL--LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI 262
Query: 432 AC 433
C
Sbjct: 263 NC 264
>pdb|1OVA|A Chain A, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 2 QGSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPN 52
Q SK + +M+ I LF RV ++ASEK+ LE+ + S M +L P+
Sbjct: 204 QESKPVQMMYQIGLF------RVASMASEKMKILELPFASGTMSMLVLLPD 248
>pdb|1OVA|B Chain B, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 2 QGSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPN 52
Q SK + +M+ I LF RV ++ASEK+ LE+ + S M +L P+
Sbjct: 204 QESKPVQMMYQIGLF------RVASMASEKMKILELPFASGTMSMLVLLPD 248
>pdb|1OVA|C Chain C, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
pdb|1OVA|D Chain D, Crystal Structure Of Uncleaved Ovalbumin At 1.95 Angstroms
Resolution
Length = 386
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 2 QGSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPN 52
Q SK + +M+ I LF RV ++ASEK+ LE+ + S M +L P+
Sbjct: 204 QESKPVQMMYQIGLF------RVASMASEKMKILELPFASGTMSMLVLLPD 248
>pdb|1JTI|A Chain A, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
pdb|1JTI|B Chain B, Loop-Inserted Structure Of P1-P1' Cleaved Ovalbumin Mutant
R339t
Length = 385
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 2 QGSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPN 52
Q SK + +M+ I LF RV ++ASEK+ LE+ + S M +L P+
Sbjct: 203 QESKPVQMMYQIGLF------RVASMASEKMKILELPFASGTMSMLVLLPD 247
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 182 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKV 241
L + +NL +L +S T DISA S + L + N +T+ +K LA+ T ++
Sbjct: 125 LKNLTNLNRLELSSNT------ISDISALSGLTSLQQLNFGNQVTD--LKPLANLTTLER 176
Query: 242 LDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL 301
LD+ K + D + ++ L L+ L+ + ISD+ L ++T+L +LSL G +L
Sbjct: 177 LDISSNK-VSD--ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNG-NQL 228
Query: 302 TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVI 361
D A + L L +SNL LS G+ L ++ +++ PL G T++
Sbjct: 229 KDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS-NISPLAGLTALT 285
Query: 362 AL 363
L
Sbjct: 286 NL 287
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 22/184 (11%)
Query: 182 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHA--IKSLASNTGI 239
L + +NL +L +S T DISA S LT L+ N +N +K LA+ T +
Sbjct: 125 LKNLTNLNRLELSSNT------ISDISALS-GLT--SLQQLNFSSNQVTDLKPLANLTTL 175
Query: 240 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCK 299
+ LD+ K + D + ++ L L+ L+ + ISD+ L ++T+L +LSL G
Sbjct: 176 ERLDISSNK-VSD--ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNG-N 227
Query: 300 RLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS 359
+L D A + L L +SNL LS G+ L ++ +++ PL G T+
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS-NISPLAGLTA 284
Query: 360 VIAL 363
+ L
Sbjct: 285 LTNL 288
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 182 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKV 241
L + +NL +L +S T DISA S + L + N +T+ +K LA+ T ++
Sbjct: 125 LKNLTNLNRLELSSNT------ISDISALSGLTSLQQLNFGNQVTD--LKPLANLTTLER 176
Query: 242 LDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL 301
LD+ K + D + ++ L L+ L+ + ISD+ L ++T+L +LSL G +L
Sbjct: 177 LDISSNK-VSD--ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNG-NQL 228
Query: 302 TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVI 361
D A + L L +SNL LS G+ L ++ +++ PL G T++
Sbjct: 229 KDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS-NISPLAGLTALT 285
Query: 362 AL 363
L
Sbjct: 286 NL 287
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 182 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKV 241
L + +NL +L +S T DISA S + L + N +T+ +K LA+ T ++
Sbjct: 130 LKNLTNLNRLELSSNT------ISDISALSGLTSLQQLSFGNQVTD--LKPLANLTTLER 181
Query: 242 LDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL 301
LD+ K + D + ++ L L+ L+ + ISD+ L ++T+L +LSL G +L
Sbjct: 182 LDISSNK-VSD--ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNG-NQL 233
Query: 302 TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVI 361
D A + L L +SNL LS G+ L ++ +++ PL G T++
Sbjct: 234 KDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS-NISPLAGLTALT 290
Query: 362 AL 363
L
Sbjct: 291 NL 292
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 19/182 (10%)
Query: 182 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKV 241
L + +NL +L +S T DISA S + L + N +T+ +K LA+ T ++
Sbjct: 129 LKNLTNLNRLELSSNT------ISDISALSGLTSLQQLSFGNQVTD--LKPLANLTTLER 180
Query: 242 LDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL 301
LD+ K + D + ++ L L+ L+ + ISD+ L ++T+L +LSL G +L
Sbjct: 181 LDISSNK-VSD--ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNG-NQL 232
Query: 302 TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVI 361
D A + L L +SNL LS G+ L ++ +++ PL G T++
Sbjct: 233 KDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS-NISPLAGLTALT 289
Query: 362 AL 363
L
Sbjct: 290 NL 291
>pdb|1UHG|A Chain A, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|B Chain B, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|C Chain C, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
pdb|1UHG|D Chain D, Crystal Structure Of S-ovalbumin At 1.9 Angstrom
Resolution
Length = 385
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 2 QGSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPN 52
Q SK + +M+ I LF RV ++ASEK+ LE+ + M +L P+
Sbjct: 203 QESKPVQMMYQIGLF------RVASMASEKMKILELPFAXGTMSMLVLLPD 247
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 320 ELDLSNLPHLSDN---GILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGS 376
EL S + H++ G++ LA+ +L R C L+G+ ++ + + D
Sbjct: 124 ELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNC-LVGENLLVKIGDFGMSRD----- 177
Query: 377 SIRLLDLYNCGGITQLAFRWL 397
+ D Y GG T L RW+
Sbjct: 178 -VYSTDYYRVGGHTMLPIRWM 197
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 22/184 (11%)
Query: 182 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHA--IKSLASNTGI 239
L + +NL +L +S T DISA S LT L+ + +N +K LA+ T +
Sbjct: 125 LKNLTNLNRLELSSNT------ISDISALS-GLT--SLQQLSFSSNQVTDLKPLANLTTL 175
Query: 240 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCK 299
+ LD+ K + D + ++ L L+ L+ + ISD+ L ++T+L +LSL G
Sbjct: 176 ERLDISSNK-VSD--ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNG-N 227
Query: 300 RLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS 359
+L D A + L L +SNL LS G+ L ++ +++ PL G T+
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS-NISPLAGLTA 284
Query: 360 VIAL 363
+ L
Sbjct: 285 LTNL 288
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 22/184 (11%)
Query: 182 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHA--IKSLASNTGI 239
L + +NL +L +S T DISA S LT L+ + +N +K LA+ T +
Sbjct: 125 LKNLTNLNRLELSSNT------ISDISALS-GLT--SLQQLSFSSNQVTDLKPLANLTTL 175
Query: 240 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCK 299
+ LD+ K + D + ++ L L+ L+ + ISD+ L ++T+L +LSL G
Sbjct: 176 ERLDISSNK-VSD--ISVLAKLTNLESLIATNNQISDIT----PLGILTNLDELSLNG-N 227
Query: 300 RLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS 359
+L D A + L L +SNL LS G+ L ++ +++ PL G T+
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQIS-NISPLAGLTA 284
Query: 360 VIAL 363
+ L
Sbjct: 285 LTNL 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,838,148
Number of Sequences: 62578
Number of extensions: 557880
Number of successful extensions: 1251
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1236
Number of HSP's gapped (non-prelim): 48
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)