Query 011317
Match_columns 488
No_of_seqs 322 out of 3556
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 00:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2.4E-29 5.2E-34 225.8 8.3 378 27-435 74-460 (483)
2 KOG4341 F-box protein containi 100.0 3.2E-28 6.9E-33 218.6 9.8 318 67-413 137-462 (483)
3 KOG4194 Membrane glycoprotein 99.8 4.6E-22 9.9E-27 186.2 2.5 298 67-414 124-427 (873)
4 PLN00113 leucine-rich repeat r 99.8 7.7E-20 1.7E-24 198.5 13.9 306 66-414 138-463 (968)
5 PLN00113 leucine-rich repeat r 99.8 4.5E-19 9.6E-24 192.6 13.6 364 1-414 92-486 (968)
6 cd00116 LRR_RI Leucine-rich re 99.7 3.5E-16 7.7E-21 148.2 23.7 145 260-413 163-317 (319)
7 KOG4194 Membrane glycoprotein 99.7 1.3E-19 2.9E-24 169.8 -1.1 276 160-465 173-465 (873)
8 KOG2120 SCF ubiquitin ligase, 99.7 1.2E-17 2.7E-22 144.3 10.1 255 161-435 137-395 (419)
9 PLN03210 Resistant to P. syrin 99.7 3.6E-16 7.8E-21 170.4 13.2 125 67-221 610-734 (1153)
10 cd00116 LRR_RI Leucine-rich re 99.7 2.1E-14 4.5E-19 136.1 23.1 257 147-414 10-289 (319)
11 KOG2120 SCF ubiquitin ligase, 99.6 4.3E-16 9.2E-21 134.9 8.2 185 70-272 187-373 (419)
12 KOG1909 Ran GTPase-activating 99.6 1.3E-14 2.8E-19 128.8 13.0 205 159-387 91-309 (382)
13 KOG1947 Leucine rich repeat pr 99.5 7.8E-14 1.7E-18 140.2 13.6 252 124-397 186-448 (482)
14 KOG1909 Ran GTPase-activating 99.5 3.5E-13 7.6E-18 119.8 14.9 262 153-427 23-325 (382)
15 KOG0444 Cytoskeletal regulator 99.5 2.2E-16 4.8E-21 149.7 -5.8 297 66-416 53-375 (1255)
16 KOG1947 Leucine rich repeat pr 99.4 5.3E-13 1.2E-17 134.2 11.7 201 159-362 160-371 (482)
17 PLN03210 Resistant to P. syrin 99.4 5.2E-13 1.1E-17 145.9 11.7 289 69-417 590-907 (1153)
18 KOG0444 Cytoskeletal regulator 99.4 2.3E-14 5.1E-19 136.2 -3.7 270 67-391 102-377 (1255)
19 COG5238 RNA1 Ran GTPase-activa 99.2 2.7E-10 5.8E-15 98.1 10.6 169 234-414 89-283 (388)
20 KOG3207 Beta-tubulin folding c 99.1 1.6E-11 3.5E-16 112.4 2.1 208 67-297 120-335 (505)
21 KOG0618 Serine/threonine phosp 99.1 9E-12 2E-16 124.1 -1.8 127 262-414 359-487 (1081)
22 KOG3207 Beta-tubulin folding c 99.1 6.8E-11 1.5E-15 108.4 3.5 218 157-414 118-337 (505)
23 KOG0618 Serine/threonine phosp 98.9 1.3E-10 2.7E-15 116.1 -2.1 128 237-388 359-488 (1081)
24 COG5238 RNA1 Ran GTPase-activa 98.9 1.1E-07 2.5E-12 82.2 15.3 158 256-422 86-262 (388)
25 PRK15387 E3 ubiquitin-protein 98.8 8.7E-09 1.9E-13 105.5 8.7 13 402-414 444-456 (788)
26 KOG3665 ZYG-1-like serine/thre 98.8 1.4E-08 3E-13 103.6 9.9 160 236-411 121-283 (699)
27 PRK15387 E3 ubiquitin-protein 98.8 3.7E-09 8.1E-14 108.2 5.0 245 67-397 221-465 (788)
28 KOG3665 ZYG-1-like serine/thre 98.8 2.2E-08 4.7E-13 102.2 10.4 213 68-296 60-283 (699)
29 KOG4237 Extracellular matrix p 98.6 3.5E-09 7.5E-14 96.2 -1.5 259 66-357 89-361 (498)
30 KOG2982 Uncharacterized conser 98.5 1.8E-07 3.9E-12 82.1 5.2 228 162-411 47-287 (418)
31 KOG4237 Extracellular matrix p 98.5 1.3E-08 2.8E-13 92.5 -2.2 84 316-414 274-357 (498)
32 PRK15370 E3 ubiquitin-protein 98.5 5.6E-07 1.2E-11 93.0 9.0 151 212-397 283-435 (754)
33 KOG2982 Uncharacterized conser 98.4 1.5E-07 3.3E-12 82.5 4.0 191 152-353 63-260 (418)
34 KOG0472 Leucine-rich repeat pr 98.4 2E-08 4.4E-13 91.5 -2.3 37 374-414 503-539 (565)
35 PF14580 LRR_9: Leucine-rich r 98.4 3.1E-08 6.7E-13 82.9 -1.5 127 263-412 20-149 (175)
36 KOG0472 Leucine-rich repeat pr 98.4 7.6E-08 1.6E-12 87.9 0.6 109 255-390 428-541 (565)
37 KOG3864 Uncharacterized conser 98.4 5.6E-07 1.2E-11 74.7 5.2 104 317-432 102-209 (221)
38 PRK15370 E3 ubiquitin-protein 98.4 1.3E-06 2.7E-11 90.4 8.7 247 93-414 178-426 (754)
39 KOG1259 Nischarin, modulator o 98.3 3.1E-07 6.7E-12 80.8 3.0 142 261-430 283-433 (490)
40 PF14580 LRR_9: Leucine-rich r 98.2 1.2E-06 2.5E-11 73.5 3.3 128 160-297 19-149 (175)
41 KOG3864 Uncharacterized conser 98.2 2E-06 4.3E-11 71.5 4.2 90 263-357 102-191 (221)
42 KOG4658 Apoptotic ATPase [Sign 98.1 1.7E-06 3.6E-11 91.0 3.6 107 67-196 544-652 (889)
43 KOG1259 Nischarin, modulator o 97.9 1.9E-06 4.2E-11 75.9 0.1 128 236-390 283-412 (490)
44 KOG4658 Apoptotic ATPase [Sign 97.9 8.6E-06 1.9E-10 85.8 3.1 232 158-414 543-781 (889)
45 PF13855 LRR_8: Leucine rich r 97.5 3.1E-05 6.7E-10 52.9 1.0 59 237-298 1-59 (61)
46 KOG0617 Ras suppressor protein 97.5 1.1E-06 2.4E-11 70.8 -7.4 33 161-196 34-66 (264)
47 PF13855 LRR_8: Leucine rich r 97.5 3.1E-05 6.6E-10 52.9 0.3 61 212-274 1-61 (61)
48 KOG1859 Leucine-rich repeat pr 97.5 1.7E-05 3.6E-10 78.4 -1.6 104 159-273 186-290 (1096)
49 KOG4308 LRR-containing protein 97.4 0.00013 2.7E-09 71.8 3.8 314 70-414 89-443 (478)
50 KOG1859 Leucine-rich repeat pr 97.2 2.7E-05 5.9E-10 76.9 -3.6 23 159-181 108-130 (1096)
51 KOG0617 Ras suppressor protein 97.0 1.5E-05 3.2E-10 64.5 -5.7 149 185-352 32-183 (264)
52 PRK15386 type III secretion pr 96.9 0.0017 3.6E-08 61.8 6.0 71 159-246 51-121 (426)
53 KOG4308 LRR-containing protein 96.9 0.00016 3.4E-09 71.1 -0.9 218 162-391 89-333 (478)
54 KOG2739 Leucine-rich acidic nu 96.8 0.00037 8E-09 60.8 0.5 62 316-387 65-127 (260)
55 smart00367 LRR_CC Leucine-rich 96.7 0.002 4.4E-08 35.0 3.0 22 342-363 2-23 (26)
56 KOG2739 Leucine-rich acidic nu 96.6 0.00016 3.4E-09 63.1 -3.5 63 341-414 64-127 (260)
57 PLN03150 hypothetical protein; 96.5 0.0067 1.5E-07 62.6 7.1 106 264-389 420-528 (623)
58 smart00367 LRR_CC Leucine-rich 96.5 0.0036 7.7E-08 34.0 2.8 25 375-399 1-25 (26)
59 KOG2123 Uncharacterized conser 96.3 0.00096 2.1E-08 58.7 -0.4 113 67-205 18-133 (388)
60 PLN03150 hypothetical protein; 96.2 0.0083 1.8E-07 61.9 6.3 106 95-222 420-525 (623)
61 PRK15386 type III secretion pr 96.2 0.014 3E-07 55.7 6.9 139 209-387 49-188 (426)
62 PF12799 LRR_4: Leucine Rich r 96.0 0.015 3.2E-07 36.3 4.1 37 237-275 1-37 (44)
63 PF12799 LRR_4: Leucine Rich r 95.7 0.0089 1.9E-07 37.3 2.2 14 374-387 22-35 (44)
64 KOG2123 Uncharacterized conser 95.6 0.0027 5.9E-08 56.0 -0.4 113 236-362 18-134 (388)
65 COG4886 Leucine-rich repeat (L 95.5 0.014 3E-07 57.0 4.2 170 185-387 115-288 (394)
66 COG4886 Leucine-rich repeat (L 95.4 0.015 3.2E-07 56.8 3.8 12 210-221 161-172 (394)
67 KOG1644 U2-associated snRNP A' 95.2 0.01 2.3E-07 49.9 1.8 84 316-414 64-151 (233)
68 PF13516 LRR_6: Leucine Rich r 94.3 0.032 7E-07 29.5 1.6 21 342-363 2-22 (24)
69 KOG4579 Leucine-rich repeat (L 93.7 0.02 4.3E-07 45.1 0.2 62 233-298 49-110 (177)
70 PF13516 LRR_6: Leucine Rich r 93.7 0.078 1.7E-06 28.0 2.5 22 262-283 2-23 (24)
71 KOG1644 U2-associated snRNP A' 93.4 0.067 1.5E-06 45.2 2.8 81 316-414 42-124 (233)
72 KOG0531 Protein phosphatase 1, 93.0 0.014 3E-07 57.4 -2.1 79 210-298 93-172 (414)
73 KOG0531 Protein phosphatase 1, 91.6 0.035 7.5E-07 54.5 -1.3 125 236-387 71-197 (414)
74 KOG4579 Leucine-rich repeat (L 91.5 0.096 2.1E-06 41.4 1.4 83 289-387 28-111 (177)
75 smart00368 LRR_RI Leucine rich 88.6 0.67 1.5E-05 25.5 2.9 23 342-365 2-24 (28)
76 KOG0532 Leucine-rich repeat (L 86.2 0.077 1.7E-06 52.0 -3.1 153 233-413 117-270 (722)
77 smart00368 LRR_RI Leucine rich 85.7 1.3 2.8E-05 24.3 2.9 23 262-284 2-24 (28)
78 KOG3763 mRNA export factor TAP 84.2 2.1 4.5E-05 42.3 5.4 89 336-433 212-307 (585)
79 KOG0532 Leucine-rich repeat (L 82.5 0.25 5.5E-06 48.6 -1.4 149 210-387 119-271 (722)
80 PF13306 LRR_5: Leucine rich r 81.4 0.32 6.8E-06 38.7 -1.0 10 159-168 11-20 (129)
81 PF13504 LRR_7: Leucine rich r 80.0 1.5 3.2E-05 20.8 1.5 11 263-273 2-12 (17)
82 KOG3763 mRNA export factor TAP 73.7 4.8 0.00011 39.8 4.4 64 286-353 216-281 (585)
83 PF00560 LRR_1: Leucine Rich R 58.1 6.4 0.00014 20.0 1.1 13 263-275 1-13 (22)
84 PF07723 LRR_2: Leucine Rich R 51.9 11 0.00025 20.2 1.5 8 318-325 2-9 (26)
85 KOG1832 HIV-1 Vpr-binding prot 49.4 6.5 0.00014 41.1 0.4 8 403-410 1300-1307(1516)
86 KOG3735 Tropomodulin and leiom 48.2 25 0.00055 32.6 3.9 77 287-365 197-277 (353)
87 smart00369 LRR_TYP Leucine-ric 46.3 18 0.00038 19.1 1.7 14 262-275 2-15 (26)
88 smart00370 LRR Leucine-rich re 46.3 18 0.00038 19.1 1.7 14 262-275 2-15 (26)
89 KOG3735 Tropomodulin and leiom 41.3 73 0.0016 29.8 5.7 89 316-411 198-291 (353)
90 KOG4242 Predicted myosin-I-bin 36.5 64 0.0014 31.7 4.8 39 374-413 438-478 (553)
91 smart00365 LRR_SD22 Leucine-ri 31.1 45 0.00097 17.9 1.7 14 262-275 2-15 (26)
92 PHA02608 67 prohead core prote 29.3 42 0.0009 23.5 1.7 10 460-469 40-49 (80)
93 COG5129 MAK16 Nuclear protein 28.7 29 0.00063 29.8 1.1 12 456-467 227-238 (303)
94 KOG4032 Uncharacterized conser 27.3 25 0.00053 29.4 0.4 13 415-427 105-117 (184)
95 PF05086 Dicty_REP: Dictyostel 21.7 35 0.00076 35.4 0.4 6 459-464 876-881 (911)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=2.4e-29 Score=225.81 Aligned_cols=378 Identities=21% Similarity=0.273 Sum_probs=295.5
Q ss_pred HhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEee--cCccChhHHHHHHhcC-CCccEEeccCC
Q 011317 27 LASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLS--VDYITDAMVGTISQGL-VSLTHLDLRDA 103 (488)
Q Consensus 27 ~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~~~~~~~~~~~~~-~~L~~L~L~~~ 103 (488)
.+|+++....++++..|.+.+-..++.. |+-...- ..+-++.++. ...+...++..+.+.+ ..|+.|.++||
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~----~n~~AlD-~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~ 148 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTM----WNKLALD-GSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGC 148 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHH----hhhhhhc-cccceeeehhcchhcCCCcceehHhhhhcccccccccccc
Confidence 4677888888888877766555443321 1110000 2233444444 1334445566666655 46889999988
Q ss_pred CCCCCccccccChHHHHhhh-cCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHH
Q 011317 104 PLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTIL 182 (488)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 182 (488)
. .+.+..+..+. .||++++|.+. ++..+++..+..+...|++|++|++..|..+++..++.+.
T Consensus 149 r--------~v~~sslrt~~~~CpnIehL~l~--------gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 149 R--------AVGDSSLRTFASNCPNIEHLALY--------GCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred c--------cCCcchhhHHhhhCCchhhhhhh--------cceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 4 45555666554 78999999884 4668888888888899999999999999899988888888
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhc-C
Q 011317 183 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-S 260 (488)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~ 260 (488)
+.|++|++|++++|+.+...++..+.+.+..++.+...+|...+...+.... .++-+..+++..|..+++..+..+. .
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 8999999999999988888888888888888888888888887777666554 5677778888888888888866665 6
Q ss_pred CCCccEEEeCCC-ccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHh
Q 011317 261 LPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 339 (488)
Q Consensus 261 ~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 339 (488)
+..|+.|..++| .+++..+..+.+ ++++|+.|.+.+|..+++.++..+.++| +.|+.+++.+|-.+++..+..++.
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~-~~~~L~~l~l~~c~~fsd~~ft~l~rn~--~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQ-HCHNLQVLELSGCQQFSDRGFTMLGRNC--PHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhc-CCCceEEEeccccchhhhhhhhhhhcCC--hhhhhhcccccceehhhhHhhhcc
Confidence 788999999887 788888888888 8899999999999999999999998888 899999999988888888888888
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC--CHH
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV--NRD 417 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~--~~~ 417 (488)
+|+.|+.|.+++|..++|.|+..+..... ....|+.+.+++|+.+++..+.++.. |++|+.+++.+|. ...
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c-----~~~~l~~lEL~n~p~i~d~~Le~l~~--c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSC-----SLEGLEVLELDNCPLITDATLEHLSI--CRNLERIELIDCQDVTKE 442 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccc-----cccccceeeecCCCCchHHHHHHHhh--Ccccceeeeechhhhhhh
Confidence 99999999999998899998888765332 56789999999999999999988876 9999999999885 577
Q ss_pred HHHHHHhhCCCceeeccc
Q 011317 418 ILDALARSRPFLNVACRG 435 (488)
Q Consensus 418 ~~~~~~~~~~~l~~~~~~ 435 (488)
.+..+....|.+++--..
T Consensus 443 ~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 443 AISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhHHHHhhCccceehhhc
Confidence 888888999988775443
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=3.2e-28 Score=218.65 Aligned_cols=318 Identities=24% Similarity=0.386 Sum_probs=287.1
Q ss_pred CCCCcEEEeec-CccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhh-cCCCccEEEcccccccccccc
Q 011317 67 LPGIQKLCLSV-DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 67 l~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..-|+.|.+++ ..+++..+..+...||++++|.+.+|. .+++..+..++ .|++|++|++. .|
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--------~iTd~s~~sla~~C~~l~~l~L~--------~c 200 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--------KITDSSLLSLARYCRKLRHLNLH--------SC 200 (483)
T ss_pred ccccccccccccccCCcchhhHHhhhCCchhhhhhhcce--------eccHHHHHHHHHhcchhhhhhhc--------cc
Confidence 45789999996 678888999999999999999999994 68988888887 89999999994 46
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..+++..++.++..|++|+.|++++|+.+...++..+.+++..++.+...+|...+...+..+...++-+..+++..|..
T Consensus 201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 78999999999999999999999999999998899999999999999889999999999988888999999999999998
Q ss_pred CCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeCCC-ccchhHHHHHHhhcCCCccEEecCCCCCC
Q 011317 225 LTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRL 301 (488)
Q Consensus 225 ~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~~~~l 301 (488)
+++.....+. .+..|+.|..++|..+++..+.+++ ++++|+.|.+.+| .+++.++..++. +++.|+.+++..|..+
T Consensus 281 lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r-n~~~Le~l~~e~~~~~ 359 (483)
T KOG4341|consen 281 LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR-NCPHLERLDLEECGLI 359 (483)
T ss_pred ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-CChhhhhhccccccee
Confidence 9988876665 7899999999999999999988887 7899999999999 799999999988 9999999999999888
Q ss_pred CHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCc
Q 011317 302 TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSI 378 (488)
Q Consensus 302 ~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L 378 (488)
++..+..++.+| +.|+.|.+++|..++++++..+.. ....|..+.+++|+.+++..++.+. .|++|
T Consensus 360 ~d~tL~sls~~C--~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~---------~c~~L 428 (483)
T KOG4341|consen 360 TDGTLASLSRNC--PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS---------ICRNL 428 (483)
T ss_pred hhhhHhhhccCC--chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh---------hCccc
Confidence 888899999988 999999999999999998887753 4467999999999999999999988 79999
Q ss_pred cEEeccCCCCCCHHHHHHhhccCCCCccEEEecCC
Q 011317 379 RLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 379 ~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
+.+++.+|+.++..++..+.. .+|+++......-
T Consensus 429 eri~l~~~q~vtk~~i~~~~~-~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 429 ERIELIDCQDVTKEAISRFAT-HLPNIKVHAYFAP 462 (483)
T ss_pred ceeeeechhhhhhhhhHHHHh-hCccceehhhccC
Confidence 999999999999999999988 7999998876654
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=4.6e-22 Score=186.16 Aligned_cols=298 Identities=19% Similarity=0.187 Sum_probs=213.3
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
..+|+.|+|..|.|+.-.-+.+. .+|.|++|||+.|. ++....+.+..-.++++|+|++ ++
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~-~l~alrslDLSrN~---------is~i~~~sfp~~~ni~~L~La~---------N~ 184 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELS-ALPALRSLDLSRNL---------ISEIPKPSFPAKVNIKKLNLAS---------NR 184 (873)
T ss_pred ccceeEEeeeccccccccHHHHH-hHhhhhhhhhhhch---------hhcccCCCCCCCCCceEEeecc---------cc
Confidence 56799999998887776656654 68999999999873 5554555566667899999973 44
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+++.....+ ..+.+|.+|.|+. +.++.. ....++.+++|+.|++..+.. .... ...++.+++|+.|.+.. +.+.
T Consensus 185 It~l~~~~F-~~lnsL~tlkLsr-NrittL-p~r~Fk~L~~L~~LdLnrN~i-rive-~ltFqgL~Sl~nlklqr-N~I~ 258 (873)
T KOG4194|consen 185 ITTLETGHF-DSLNSLLTLKLSR-NRITTL-PQRSFKRLPKLESLDLNRNRI-RIVE-GLTFQGLPSLQNLKLQR-NDIS 258 (873)
T ss_pred ccccccccc-cccchheeeeccc-Cccccc-CHHHhhhcchhhhhhccccce-eeeh-hhhhcCchhhhhhhhhh-cCcc
Confidence 544332222 3466899999998 577665 334457799999999987642 2111 11245778899998887 4554
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC---H
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---D 303 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~---~ 303 (488)
...-..+..+.++++|++..+ .+....-..+-+++.|+.|+++.|.|.......+.. +++|+.|+++++. ++ .
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf--tqkL~~LdLs~N~-i~~l~~ 334 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF--TQKLKELDLSSNR-ITRLDE 334 (873)
T ss_pred cccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhh--cccceeEeccccc-cccCCh
Confidence 333334557899999999874 666666566778999999999999877766666666 8999999999853 44 5
Q ss_pred HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCC---CCCHHHHHHHHcccccCCCCCCCCccE
Q 011317 304 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP---LIGDTSVIALASMLVDDDRWYGSSIRL 380 (488)
Q Consensus 304 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~---~l~~~~~~~l~~~~~~~~~~~~~~L~~ 380 (488)
..+..+ .+|++|.|++ +.++.-.-.++ ..+.+|+.|++++|. .+.| +...+. .++.|++
T Consensus 335 ~sf~~L------~~Le~LnLs~-Nsi~~l~e~af-~~lssL~~LdLr~N~ls~~IED-aa~~f~---------gl~~Lrk 396 (873)
T KOG4194|consen 335 GSFRVL------SQLEELNLSH-NSIDHLAEGAF-VGLSSLHKLDLRSNELSWCIED-AAVAFN---------GLPSLRK 396 (873)
T ss_pred hHHHHH------HHhhhhcccc-cchHHHHhhHH-HHhhhhhhhcCcCCeEEEEEec-chhhhc---------cchhhhh
Confidence 667777 7899999998 66663322222 257899999999883 1223 112222 6889999
Q ss_pred EeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 381 LDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 381 L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
|.+.+|+ +....-+++.. +++|++|++.+|.
T Consensus 397 L~l~gNq-lk~I~krAfsg--l~~LE~LdL~~Na 427 (873)
T KOG4194|consen 397 LRLTGNQ-LKSIPKRAFSG--LEALEHLDLGDNA 427 (873)
T ss_pred eeecCce-eeecchhhhcc--CcccceecCCCCc
Confidence 9999998 88877778876 9999999999986
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=7.7e-20 Score=198.52 Aligned_cols=306 Identities=19% Similarity=0.125 Sum_probs=133.2
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
.+++|++|+++++.+.......+. .+++|++|++++|. ++......++.+++|++|+++++.
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~---------l~~~~p~~~~~l~~L~~L~L~~n~-------- 199 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNV---------LVGKIPNSLTNLTSLEFLTLASNQ-------- 199 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHh-cCCCCCEEECccCc---------ccccCChhhhhCcCCCeeeccCCC--------
Confidence 366777777776665544333333 57777777777763 222222345566666666665332
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
+... +......+++|+.|+++++ .+....... +..+++|++|+++++..... +......+++|++|+++++. +
T Consensus 200 -l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~-l 272 (968)
T PLN00113 200 -LVGQ-IPRELGQMKSLKWIYLGYN-NLSGEIPYE-IGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQNK-L 272 (968)
T ss_pred -CcCc-CChHHcCcCCccEEECcCC-ccCCcCChh-HhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCCe-e
Confidence 1100 0111123555555555553 332221111 23455555555554432111 11122344455555555432 2
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--H
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--D 303 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~ 303 (488)
.......+..+++|+.|++++| .+.......+..+++|+.|++++|.+.......+.. +++|+.|++++|.... +
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS--LPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred eccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc--CCCCCEEECcCCCCcCcCC
Confidence 1111112334455555555543 222222233344455555555554443322222222 4445555554432110 1
Q ss_pred HHHHHHh------------------ccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHc
Q 011317 304 KCISALF------------------DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 304 ~~~~~l~------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
..+..+. ..+.+++|+.|+++++ .++......+. .+++|+.|++++| .++......+.
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n-~l~~~~p~~~~-~~~~L~~L~L~~n-~l~~~~p~~~~- 425 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN-SLEGEIPKSLG-ACRSLRRVRLQDN-SFSGELPSEFT- 425 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC-EecccCCHHHh-CCCCCCEEECcCC-EeeeECChhHh-
Confidence 1111110 0001134444444442 22211111122 3566666666666 33322222222
Q ss_pred ccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 366 MLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++......+. .+++|+.|++++|.
T Consensus 426 --------~l~~L~~L~Ls~N~-l~~~~~~~~~--~l~~L~~L~L~~n~ 463 (968)
T PLN00113 426 --------KLPLVYFLDISNNN-LQGRINSRKW--DMPSLQMLSLARNK 463 (968)
T ss_pred --------cCCCCCEEECcCCc-ccCccChhhc--cCCCCcEEECcCce
Confidence 45667777777665 4443322232 26777777777765
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=4.5e-19 Score=192.61 Aligned_cols=364 Identities=15% Similarity=0.066 Sum_probs=180.2
Q ss_pred CCccceeeeeecccccchhhHHHHHHHhhhccceeeeccc------cccccceecCCCCCCCCCCCccc--CCCCCCCcE
Q 011317 1 MQGSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYI------SSVMVTELLSPNVEPHQSPNQIR--PSILPGIQK 72 (488)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~~~lp~~l~~L~l~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~L~~ 72 (488)
|.+|+.|.|+.+.- ...-...++..+. +|+.|++++. |......+....+.....-.... ...+++|++
T Consensus 92 l~~L~~L~Ls~n~~--~~~ip~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNNQL--SGPIPDDIFTTSS-SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCCcc--CCcCChHHhccCC-CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 45788888875432 2222233445566 8888888732 21111111111111111111111 123788889
Q ss_pred EEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHH
Q 011317 73 LCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGI 152 (488)
Q Consensus 73 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 152 (488)
|+++++.+.......+. .+++|++|++++|. ++......++.+++|++|+++.+. +... +
T Consensus 169 L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~---------l~~~~p~~l~~l~~L~~L~L~~n~---------l~~~-~ 228 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQ---------LVGQIPRELGQMKSLKWIYLGYNN---------LSGE-I 228 (968)
T ss_pred EECccCcccccCChhhh-hCcCCCeeeccCCC---------CcCcCChHHcCcCCccEEECcCCc---------cCCc-C
Confidence 99887766554444444 68888888888874 333233345566677777765332 1110 0
Q ss_pred HHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC---------
Q 011317 153 LLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN--------- 223 (488)
Q Consensus 153 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--------- 223 (488)
......+++|++|+++++ .+... ++..+..+++|+.|+++++..... +......+++|++|+++++.
T Consensus 229 p~~l~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYN-NLTGP-IPSSLGNLKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred ChhHhcCCCCCEEECcCc-eeccc-cChhHhCCCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCeeccCCChhH
Confidence 111133555666666553 33222 112223455555555554432110 01111233455555555431
Q ss_pred --------------CCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 224 --------------LLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 224 --------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.......+.. +++
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~--~~~ 381 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN-KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS--SGN 381 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC-CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC--cCC
Confidence 111111122334444444444443 222222223344455555555555443322222222 445
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHccccc
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 369 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 369 (488)
|+.|++.++. +.......+ .. +++|+.|++++| .++......+. .+++|+.|++++| .++......+.
T Consensus 382 L~~L~l~~n~-l~~~~p~~~-~~--~~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~----- 449 (968)
T PLN00113 382 LFKLILFSNS-LEGEIPKSL-GA--CRSLRRVRLQDN-SFSGELPSEFT-KLPLVYFLDISNN-NLQGRINSRKW----- 449 (968)
T ss_pred CCEEECcCCE-ecccCCHHH-hC--CCCCCEEECcCC-EeeeECChhHh-cCCCCCEEECcCC-cccCccChhhc-----
Confidence 5555555543 221100111 11 289999999995 55532222232 6899999999998 55543222222
Q ss_pred CCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 370 DDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 370 ~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. +.......+ ..++|+.|++++|.
T Consensus 450 ----~l~~L~~L~L~~n~-~~~~~p~~~---~~~~L~~L~ls~n~ 486 (968)
T PLN00113 450 ----DMPSLQMLSLARNK-FFGGLPDSF---GSKRLENLDLSRNQ 486 (968)
T ss_pred ----cCCCCcEEECcCce-eeeecCccc---ccccceEEECcCCc
Confidence 68899999999998 443222222 25799999999886
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=3.5e-16 Score=148.21 Aligned_cols=145 Identities=28% Similarity=0.250 Sum_probs=70.2
Q ss_pred CCCCccEEEeCCCccchhHHHHHHh--hcCCCccEEecCCCCCCCHHHHHHHhcc-CCCCCeeEEecCCCCCCCHHHHHH
Q 011317 260 SLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILT 336 (488)
Q Consensus 260 ~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~ 336 (488)
.+++|++|++++|.+++.++..+.. ..+++|+.|++++|. +++.+...+... ..+++|++|++++| .+++.++..
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~ 240 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAA 240 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHH
Confidence 4455555555555555444333221 013456666665542 443333222111 11256666666663 455555544
Q ss_pred HHhcC----CCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhcc--CC-CCccEEE
Q 011317 337 LATCR----VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKP--YF-PRLRWLG 409 (488)
Q Consensus 337 l~~~~----~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~--~~-~~L~~L~ 409 (488)
+...+ +.|+.|++++| .+++.+...+..... .+++|+.+++++|. +++.+...+... .. +.|+.++
T Consensus 241 l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~-----~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 241 LASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLA-----EKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred HHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHh-----cCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcc
Confidence 44332 56666666666 565555544443222 44566666666665 665543333220 12 4566666
Q ss_pred ecCC
Q 011317 410 VTGS 413 (488)
Q Consensus 410 l~~~ 413 (488)
+.++
T Consensus 314 ~~~~ 317 (319)
T cd00116 314 VKDD 317 (319)
T ss_pred cCCC
Confidence 5544
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.3e-19 Score=169.81 Aligned_cols=276 Identities=20% Similarity=0.171 Sum_probs=161.8
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCc
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 239 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 239 (488)
.++++|+|++ +.|+...... +..+.+|..|.++++. ++..+.. .++.+|+|+.|++.. +.+.......+.++++|
T Consensus 173 ~ni~~L~La~-N~It~l~~~~-F~~lnsL~tlkLsrNr-ittLp~r-~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl 247 (873)
T KOG4194|consen 173 VNIKKLNLAS-NRITTLETGH-FDSLNSLLTLKLSRNR-ITTLPQR-SFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSL 247 (873)
T ss_pred CCceEEeecc-cccccccccc-ccccchheeeecccCc-ccccCHH-Hhhhcchhhhhhccc-cceeeehhhhhcCchhh
Confidence 4577777776 4565443333 2345567777777654 3333322 344567777777776 34433323345577777
Q ss_pred CEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCCCC
Q 011317 240 KVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSKL 316 (488)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~~ 316 (488)
+.|.+..+ .+....-.+|..+.++++|+|..|++....-..+. +++.|+.|+++++. +. .++...- +
T Consensus 248 ~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L~~L~lS~Na-I~rih~d~Wsft------q 317 (873)
T KOG4194|consen 248 QNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTSLEQLDLSYNA-IQRIHIDSWSFT------Q 317 (873)
T ss_pred hhhhhhhc-CcccccCcceeeecccceeecccchhhhhhccccc--ccchhhhhccchhh-hheeecchhhhc------c
Confidence 77777653 34333334455678888888888866654333333 48889999988743 33 2222222 8
Q ss_pred CeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCH---HH
Q 011317 317 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ---LA 393 (488)
Q Consensus 317 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~---~~ 393 (488)
+|+.|+|++ +.++.-.-.++. .+..|++|++++| .++...-..+. .+.+|++|+++.|. ++. .+
T Consensus 318 kL~~LdLs~-N~i~~l~~~sf~-~L~~Le~LnLs~N-si~~l~e~af~---------~lssL~~LdLr~N~-ls~~IEDa 384 (873)
T KOG4194|consen 318 KLKELDLSS-NRITRLDEGSFR-VLSQLEELNLSHN-SIDHLAEGAFV---------GLSSLHKLDLRSNE-LSWCIEDA 384 (873)
T ss_pred cceeEeccc-cccccCChhHHH-HHHHhhhhccccc-chHHHHhhHHH---------HhhhhhhhcCcCCe-EEEEEecc
Confidence 899999998 666632222222 3667999999988 55443322222 56789999999887 543 23
Q ss_pred HHHhhccCCCCccEEEecCCCCHHHHHHHHhhCCCce-eecccccccCCccCCCCCe-----e-----eecCcchHHHHH
Q 011317 394 FRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLN-VACRGEELGVDQWDNSDGM-----Y-----MHDYDEVDELEQ 462 (488)
Q Consensus 394 ~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~ 462 (488)
...+.. +++|+.|.+.||....+...-....+.++ +...++.+.....+..... . ..=+-+++++.+
T Consensus 385 a~~f~g--l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 385 AVAFNG--LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred hhhhcc--chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccHHHHHH
Confidence 334443 89999999999975444444444555554 4444444443333322211 0 011245778899
Q ss_pred HHh
Q 011317 463 WLM 465 (488)
Q Consensus 463 ~~~ 465 (488)
|+.
T Consensus 463 Wl~ 465 (873)
T KOG4194|consen 463 WLY 465 (873)
T ss_pred HHH
Confidence 984
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.2e-17 Score=144.34 Aligned_cols=255 Identities=19% Similarity=0.254 Sum_probs=196.1
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHH-HHhcCCCCCEEEecCCCCCCHHHHHH-hhCCCC
Q 011317 161 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD-ISATSLSLTHVCLRWCNLLTNHAIKS-LASNTG 238 (488)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~ 238 (488)
.-+.+|+.+ ..+.......+.+ .....+.+.... ..+..+.. ..-.-..|+++++++ ..++...+.. +.+|.+
T Consensus 137 lW~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar~~-~~~prlae~~~~frsRlq~lDLS~-s~it~stl~~iLs~C~k 211 (419)
T KOG2120|consen 137 LWQTLDLTG-RNIHPDVLGRLLS--RGVIVFRLARSF-MDQPRLAEHFSPFRSRLQHLDLSN-SVITVSTLHGILSQCSK 211 (419)
T ss_pred ceeeeccCC-CccChhHHHHHHh--CCeEEEEcchhh-hcCchhhhhhhhhhhhhHHhhcch-hheeHHHHHHHHHHHHh
Confidence 356778877 5666655555543 566667666432 22221221 112334799999998 4666555544 458999
Q ss_pred cCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC-ccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 011317 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 317 (488)
Q Consensus 239 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 317 (488)
|+.|.+.|. .+.|.....++...+|+.|+|+.| +++..++..+.. .|+.|.+|+++-|...++. +..+..+ ..++
T Consensus 212 Lk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~-scs~L~~LNlsWc~l~~~~-Vtv~V~h-ise~ 287 (419)
T KOG2120|consen 212 LKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS-SCSRLDELNLSWCFLFTEK-VTVAVAH-ISET 287 (419)
T ss_pred hhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHH-hhhhHhhcCchHhhccchh-hhHHHhh-hchh
Confidence 999999984 777877888888999999999997 889888888777 7999999999999755554 3333222 2289
Q ss_pred eeEEecCCCC-CCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHH
Q 011317 318 LQELDLSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 396 (488)
Q Consensus 318 L~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 396 (488)
|+.|+++||. ++....+..+.+.||+|..|+++.|..+++..+..+. .++.|++|.++.|+.|....+-+
T Consensus 288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~---------kf~~L~~lSlsRCY~i~p~~~~~ 358 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------KFNYLQHLSLSRCYDIIPETLLE 358 (419)
T ss_pred hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH---------hcchheeeehhhhcCCChHHeee
Confidence 9999999984 4567788999999999999999999889997777766 68999999999999888887777
Q ss_pred hhccCCCCccEEEecCCCCHHHHHHHHhhCCCceeeccc
Q 011317 397 LKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRG 435 (488)
Q Consensus 397 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~ 435 (488)
+.. -|+|.+|++.||..+..++.+....|++++.+..
T Consensus 359 l~s--~psl~yLdv~g~vsdt~mel~~e~~~~lkin~q~ 395 (419)
T KOG2120|consen 359 LNS--KPSLVYLDVFGCVSDTTMELLKEMLSHLKINCQH 395 (419)
T ss_pred ecc--CcceEEEEeccccCchHHHHHHHhCcccccccee
Confidence 765 8999999999999999999999999999887653
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.67 E-value=3.6e-16 Score=170.42 Aligned_cols=125 Identities=14% Similarity=0.182 Sum_probs=64.9
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
..+|+.|++..+.+..- ...+ ..+++|+.|+|+++..+ . .++.++.+++|++|++++|... ..
T Consensus 610 ~~~L~~L~L~~s~l~~L-~~~~-~~l~~Lk~L~Ls~~~~l--------~--~ip~ls~l~~Le~L~L~~c~~L-----~~ 672 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKL-WDGV-HSLTGLRNIDLRGSKNL--------K--EIPDLSMATNLETLKLSDCSSL-----VE 672 (1153)
T ss_pred ccCCcEEECcCcccccc-cccc-ccCCCCCEEECCCCCCc--------C--cCCccccCCcccEEEecCCCCc-----cc
Confidence 45677777776555431 1122 35677777777766422 1 1123455677777777544211 11
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 221 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 221 (488)
+......+++|+.|++++|..+.... .. ..+++|+.|++++|..+...+ ...++|+.|++++
T Consensus 673 -----lp~si~~L~~L~~L~L~~c~~L~~Lp-~~--i~l~sL~~L~Lsgc~~L~~~p-----~~~~nL~~L~L~~ 734 (1153)
T PLN03210 673 -----LPSSIQYLNKLEDLDMSRCENLEILP-TG--INLKSLYRLNLSGCSRLKSFP-----DISTNISWLDLDE 734 (1153)
T ss_pred -----cchhhhccCCCCEEeCCCCCCcCccC-Cc--CCCCCCCEEeCCCCCCccccc-----cccCCcCeeecCC
Confidence 11222446677777777765544321 11 145677777777665433211 1234566666655
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=2.1e-14 Score=136.09 Aligned_cols=257 Identities=23% Similarity=0.218 Sum_probs=171.4
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHH---HHHHHhCCCCceEEecCCCCCC-HHHH---HHHHhcCCCCCEEEe
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGF---KTILHSCSNLYKLRVSHGTQLT-DLVF---HDISATSLSLTHVCL 219 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~-~~~~---~~~~~~~~~L~~L~l 219 (488)
+.+.....++..+++|+.|+++++ .++..+. .......++|++|+++++..-. ...+ ......+++|++|++
T Consensus 10 l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 88 (319)
T cd00116 10 LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL 88 (319)
T ss_pred ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc
Confidence 333334445555777999999985 6655443 3344456779999998765321 2222 223345789999999
Q ss_pred cCCCCCCHHHHHHhhCC---CCcCEEeccCCCCCChHHHH----hhcCC-CCccEEEeCCCccchhHHHHHHh--hcCCC
Q 011317 220 RWCNLLTNHAIKSLASN---TGIKVLDLRDCKNLGDEALR----AISSL-PQLKILLLDGSDISDVGVSYLRL--TVITS 289 (488)
Q Consensus 220 ~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~i~~~~~~~l~~--~~~~~ 289 (488)
+++. +.......+..+ ++|++|++++| .+.+.+.. .+..+ ++|+.|++++|.++..+...+.. ..+++
T Consensus 89 ~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 166 (319)
T cd00116 89 SDNA-LGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD 166 (319)
T ss_pred cCCC-CChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC
Confidence 9864 332222233322 56999999986 45544433 33466 89999999999888554433322 14679
Q ss_pred ccEEecCCCCCCCHHHHHHHhccC-CCCCeeEEecCCCCCCCHHHHHHH---HhcCCCCCeEeecCCCCCCHHHHHHHHc
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGT-SKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
|++|++++|. +++.++..+.... ..++|++|++++| .+++.+...+ ...+++|+.|++++| .+++.++..++.
T Consensus 167 L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~ 243 (319)
T cd00116 167 LKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALAS 243 (319)
T ss_pred cCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHH
Confidence 9999999964 7766555443211 1269999999996 7776665544 335789999999999 899888888776
Q ss_pred ccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011317 366 MLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 414 (488)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 414 (488)
.... ..+.|++|++++|. +++.+...+.. +.+++|+++++++|.
T Consensus 244 ~~~~----~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 244 ALLS----PNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHhc----cCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 3211 24799999999997 87655544432 236899999999986
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.3e-16 Score=134.93 Aligned_cols=185 Identities=21% Similarity=0.255 Sum_probs=88.9
Q ss_pred CcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccCh
Q 011317 70 IQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVND 149 (488)
Q Consensus 70 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 149 (488)
|++|||+...++...+..+.+.|..|+.|.|.|. .+.+.....++.-.+|+.|+++ .+..++.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~---------~LdD~I~~~iAkN~~L~~lnls--------m~sG~t~ 249 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL---------RLDDPIVNTIAKNSNLVRLNLS--------MCSGFTE 249 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhcccccc---------ccCcHHHHHHhccccceeeccc--------cccccch
Confidence 5555555555555555555555555555555554 2444444445555555555552 2444555
Q ss_pred HHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHh-CCCCceEEecCCCC-CCHHHHHHHHhcCCCCCEEEecCCCCCCH
Q 011317 150 LGILLMADKCASMESICLGGFCRVTDTGFKTILHS-CSNLYKLRVSHGTQ-LTDLVFHDISATSLSLTHVCLRWCNLLTN 227 (488)
Q Consensus 150 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 227 (488)
.++..+...|+.|..|+|++|...++. +..++.+ -++|+.|+++|+.. +....+..+.+.||+|.+|+++.|..+.+
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence 555555555555555555554333332 2222222 23455555554432 23333444444555555555555544544
Q ss_pred HHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC
Q 011317 228 HAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 272 (488)
Q Consensus 228 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 272 (488)
.-+..+.+++.|++|.++.|..+....+-.+...|.|.+|++.+|
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 444444455555555555554444444333444445555554443
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-14 Score=128.80 Aligned_cols=205 Identities=22% Similarity=0.271 Sum_probs=100.5
Q ss_pred CCCCCEEEEcCCCCCCH---HHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhC
Q 011317 159 CASMESICLGGFCRVTD---TGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLAS 235 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 235 (488)
+|+|++|+||+ +.+.. .++..+++++..|++|.+.+|. +...+-..+.+. |.+|. .....+.
T Consensus 91 ~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~a---l~~l~----------~~kk~~~ 155 (382)
T KOG1909|consen 91 CPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRA---LFELA----------VNKKAAS 155 (382)
T ss_pred CCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHH---HHHHH----------HHhccCC
Confidence 56677777766 34433 2344555666777777777665 333333333221 11111 0112234
Q ss_pred CCCcCEEeccCCCCCChHHHH----hhcCCCCccEEEeCCCccchhHHHHHHh--hcCCCccEEecCCCCCCCHHHHHHH
Q 011317 236 NTGIKVLDLRDCKNLGDEALR----AISSLPQLKILLLDGSDISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISAL 309 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l 309 (488)
.++|+++....+ .+.+.+.. .+...+.|+.+.+..|.|...+...+.. ..|++|+.|++..+ .++..+-..+
T Consensus 156 ~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~L 233 (382)
T KOG1909|consen 156 KPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVAL 233 (382)
T ss_pred CcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHH
Confidence 556666666553 34333322 2335567777777776665555432221 25777777777763 2443333332
Q ss_pred hcc-CCCCCeeEEecCCCCCCCHHHHHH----HHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 310 FDG-TSKLQLQELDLSNLPHLSDNGILT----LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 310 ~~~-~~~~~L~~L~l~~~~~l~~~~~~~----l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
+.. +.+++|+.|++++| .+...|..+ +....|+|+.|.+.+| .++..+...++.... ..|.|+.|+++
T Consensus 234 akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~-----ek~dL~kLnLn 306 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMA-----EKPDLEKLNLN 306 (382)
T ss_pred HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHh-----cchhhHHhcCC
Confidence 211 12255666666665 344333332 2334456666666666 555444444332221 34555555555
Q ss_pred CCC
Q 011317 385 NCG 387 (488)
Q Consensus 385 ~~~ 387 (488)
+|.
T Consensus 307 gN~ 309 (382)
T KOG1909|consen 307 GNR 309 (382)
T ss_pred ccc
Confidence 555
No 13
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.53 E-value=7.8e-14 Score=140.24 Aligned_cols=252 Identities=28% Similarity=0.383 Sum_probs=124.7
Q ss_pred cCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcC-CCCCC--HHHHHHHHHhCCCCceEEecCCCCCC
Q 011317 124 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGG-FCRVT--DTGFKTILHSCSNLYKLRVSHGTQLT 200 (488)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~ 200 (488)
.++.|+.|.+.+ +..+++.++..+...+++|+.|++++ |..+. ......+...+++|+.|+++.+..++
T Consensus 186 ~~~~L~~l~l~~--------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSG--------CSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hCchhhHhhhcc--------cccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 456666666632 34444444555555566666666655 22221 11122344455666666666655566
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeCCCc----c
Q 011317 201 DLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSD----I 274 (488)
Q Consensus 201 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~----i 274 (488)
+.++..+...|++|+.|.+.+|..+++.++..+. .+++|++|++++|..+++.++..+. ++++|+.|.+.... +
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l 337 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSL 337 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccH
Confidence 6666666666666666666666555566555554 4566666666666655555444332 45555554443321 2
Q ss_pred chhHHHHHHhhcC-CCccEEecCCCCCCCHHHHHHHhccCCCCCee-EEecCCCCCCCHHHHHHHHhcCCCCCeEeecCC
Q 011317 275 SDVGVSYLRLTVI-TSLVKLSLRGCKRLTDKCISALFDGTSKLQLQ-ELDLSNLPHLSDNGILTLATCRVPISELRVRQC 352 (488)
Q Consensus 275 ~~~~~~~l~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 352 (488)
++..+..+.. .. ..+..+.+.+|.++++..+.... . .... .+.+.+|+.++ .++......+..++.|++..|
T Consensus 338 ~~~~l~~~~~-~~~d~~~~~~~~~~~~l~~~~l~~~~-~---~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~ 411 (482)
T KOG1947|consen 338 TDLSLSGLLT-LTSDDLAELILRSCPKLTDLSLSYCG-I---SDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDC 411 (482)
T ss_pred HHHHHHHhhc-cCchhHhHHHHhcCCCcchhhhhhhh-c---cCcchHHHhcCCcccc-hHHHHHhccCCccceEecccC
Confidence 2222222222 11 12333333333333333322221 0 1111 34444555554 444444433444666666666
Q ss_pred CCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHh
Q 011317 353 PLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 397 (488)
Q Consensus 353 ~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 397 (488)
..+++..+..... .+.+++.+++.+|..++......+
T Consensus 412 ~~~t~~~l~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~ 448 (482)
T KOG1947|consen 412 RLVTDKGLRCLAD--------SCSNLKDLDLSGCRVITLKSLEGF 448 (482)
T ss_pred ccccccchHHHhh--------hhhccccCCccCcccccchhhhhh
Confidence 5566666655553 355566666666665555554443
No 14
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.52 E-value=3.5e-13 Score=119.77 Aligned_cols=262 Identities=23% Similarity=0.295 Sum_probs=174.9
Q ss_pred HHHHHhCCCCCEEEEcCCCCCCHHHHHHHHH---hCCCCceEEecCCCC--CCHHH------HHHHHhcCCCCCEEEecC
Q 011317 153 LLMADKCASMESICLGGFCRVTDTGFKTILH---SCSNLYKLRVSHGTQ--LTDLV------FHDISATSLSLTHVCLRW 221 (488)
Q Consensus 153 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~--~~~~~------~~~~~~~~~~L~~L~l~~ 221 (488)
.........++.+++++ +.+.....+.+.. ..++|+..+++.... +.+.. +......+|+|+.|+++.
T Consensus 23 ~~~~~~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 33444578899999999 5666555554444 445677777664321 11111 122233678999999998
Q ss_pred CCCCCHHHHHHh----hCCCCcCEEeccCCCCCChHHHHhh-------------cCCCCccEEEeCCCccchhHHHHHHh
Q 011317 222 CNLLTNHAIKSL----ASNTGIKVLDLRDCKNLGDEALRAI-------------SSLPQLKILLLDGSDISDVGVSYLRL 284 (488)
Q Consensus 222 ~~~~~~~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~l-------------~~~~~L~~L~l~~~~i~~~~~~~l~~ 284 (488)
+.++..+...+ ..+..|++|.+.+| .+...+-..+ ..-+.|+.+....|++.+.+...++.
T Consensus 102 -NA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~ 179 (382)
T KOG1909|consen 102 -NAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAE 179 (382)
T ss_pred -cccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHH
Confidence 56666655544 37899999999987 4554433332 24578999999888877766544332
Q ss_pred --hcCCCccEEecCCCCCCCHHHHHHH---hccCCCCCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCC
Q 011317 285 --TVITSLVKLSLRGCKRLTDKCISAL---FDGTSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIG 356 (488)
Q Consensus 285 --~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~ 356 (488)
..++.|+.+.+..+ .+.+.++..+ +.+| ++|+.|+|.. +.++..+-.++++ .+++|+.|++++| .+.
T Consensus 180 ~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~--~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dc-ll~ 254 (382)
T KOG1909|consen 180 AFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHC--PHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDC-LLE 254 (382)
T ss_pred HHHhccccceEEEecc-cccCchhHHHHHHHHhC--Ccceeeeccc-chhhhHHHHHHHHHhcccchheeeccccc-ccc
Confidence 14688999998874 4666655333 2335 8999999988 6777666555544 4567889999999 888
Q ss_pred HHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC---CHHHHHHHHhhCC
Q 011317 357 DTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV---NRDILDALARSRP 427 (488)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~---~~~~~~~~~~~~~ 427 (488)
+.|..++..++.. ..|+|+.|.+.+|. |+..+...+.. +.-|.|+.|++++|. ....+..+...++
T Consensus 255 ~~Ga~a~~~al~~----~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 255 NEGAIAFVDALKE----SAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFD 325 (382)
T ss_pred cccHHHHHHHHhc----cCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcc
Confidence 8887777765544 67899999999998 77766554443 236889999999885 3456666665554
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=2.2e-16 Score=149.71 Aligned_cols=297 Identities=20% Similarity=0.220 Sum_probs=147.6
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHH-hhhcCCCccEEEcccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQ-QINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
.+.+|++|.+..|.+.. ..+.+ +.+|.|+.+.++.|. +.+.+++ .+..+..|+.|+|+.++-
T Consensus 53 ~lqkLEHLs~~HN~L~~-vhGEL-s~Lp~LRsv~~R~N~---------LKnsGiP~diF~l~dLt~lDLShNqL------ 115 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLIS-VHGEL-SDLPRLRSVIVRDNN---------LKNSGIPTDIFRLKDLTILDLSHNQL------ 115 (1255)
T ss_pred HHhhhhhhhhhhhhhHh-hhhhh-ccchhhHHHhhhccc---------cccCCCCchhcccccceeeecchhhh------
Confidence 35677777776555443 23333 367777777777763 3333333 355677777777764331
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..++ .-....+++-.|+|++ ++|... +..++.++..|-.|+++++. +.. +..-.+.+.+|+.|.+++ +.
T Consensus 116 ~EvP-----~~LE~AKn~iVLNLS~-N~IetI-Pn~lfinLtDLLfLDLS~Nr-Le~--LPPQ~RRL~~LqtL~Ls~-NP 184 (1255)
T KOG0444|consen 116 REVP-----TNLEYAKNSIVLNLSY-NNIETI-PNSLFINLTDLLFLDLSNNR-LEM--LPPQIRRLSMLQTLKLSN-NP 184 (1255)
T ss_pred hhcc-----hhhhhhcCcEEEEccc-CccccC-CchHHHhhHhHhhhccccch-hhh--cCHHHHHHhhhhhhhcCC-Ch
Confidence 1111 1112345666777776 344433 33444556666666776543 211 111233445667777766 34
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-- 302 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-- 302 (488)
+....+..+..+++|+.|++++....-+.....+..+.+|..++++.|++... ...+.. +++|+.|+++++ .++
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecly~--l~~LrrLNLS~N-~iteL 260 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECLYK--LRNLRRLNLSGN-KITEL 260 (1255)
T ss_pred hhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc-hHHHhh--hhhhheeccCcC-ceeee
Confidence 44444444445555566666654433332223333444555555555443321 111222 445555555542 232
Q ss_pred -----------------------HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHH
Q 011317 303 -----------------------DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS 359 (488)
Q Consensus 303 -----------------------~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 359 (488)
++.+..+ ++|+.|.+.+ ++++-+|+..-...+.+|+.+...+| .+. ..
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL------~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN-~LE-lV 331 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLTVLPDAVCKL------TKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANN-KLE-LV 331 (1255)
T ss_pred eccHHHHhhhhhhccccchhccchHHHhhh------HHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhcc-ccc-cC
Confidence 2222222 4444444444 33432222111112334444444443 211 01
Q ss_pred HHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCCCH
Q 011317 360 VIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNR 416 (488)
Q Consensus 360 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~~ 416 (488)
.+.++ .|+.|+.|.++.|.-|+-...-++ ++.|+.|+++.++..
T Consensus 332 PEglc---------RC~kL~kL~L~~NrLiTLPeaIHl----L~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 332 PEGLC---------RCVKLQKLKLDHNRLITLPEAIHL----LPDLKVLDLRENPNL 375 (1255)
T ss_pred chhhh---------hhHHHHHhcccccceeechhhhhh----cCCcceeeccCCcCc
Confidence 11222 688999999999886664322233 789999999999843
No 16
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.44 E-value=5.3e-13 Score=134.19 Aligned_cols=201 Identities=30% Similarity=0.422 Sum_probs=108.7
Q ss_pred CCCCCEEEEcCCCC-CCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCCHHH---HHHh
Q 011317 159 CASMESICLGGFCR-VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW-CNLLTNHA---IKSL 233 (488)
Q Consensus 159 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~---~~~l 233 (488)
+..++.+.+..+.. ........+...++.|+.|.+.++..+.+..+..+...++.|+.|++++ +......+ ....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 239 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL 239 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh
Confidence 34445554444322 2333344444456667777776666666655555666666777777665 22221111 1122
Q ss_pred hCCCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeCCCc-cchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhc
Q 011317 234 ASNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSD-ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFD 311 (488)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 311 (488)
..+++|+.|+++++..+++.++..++ .|++|+.|.+.+|. +++.++..+.. .++.|++|++++|..+++.++..+..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~-~~~~L~~L~l~~c~~~~d~~l~~~~~ 318 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE-RCPSLRELDLSGCHGLTDSGLEALLK 318 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH-hcCcccEEeeecCccchHHHHHHHHH
Confidence 25566777777766556666666665 36677777766664 66667666666 66667777777776666666666655
Q ss_pred cCCCCCeeEEecCC---CCCCCHHHHHHHHhcCC-CCCeEeecCCCCCCHHHHHH
Q 011317 312 GTSKLQLQELDLSN---LPHLSDNGILTLATCRV-PISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 312 ~~~~~~L~~L~l~~---~~~l~~~~~~~l~~~~~-~L~~L~l~~~~~l~~~~~~~ 362 (488)
.| ++|+.|.+.. |..++..++..+..... .+..+.+.+|+.+++..+..
T Consensus 319 ~c--~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~ 371 (482)
T KOG1947|consen 319 NC--PNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSY 371 (482)
T ss_pred hC--cchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhh
Confidence 54 5555544333 23344444443332221 34444444444444444433
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.43 E-value=5.2e-13 Score=145.90 Aligned_cols=289 Identities=18% Similarity=0.205 Sum_probs=159.9
Q ss_pred CCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccC
Q 011317 69 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 148 (488)
Q Consensus 69 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 148 (488)
+|+.|.+.++.+..- ...+ .+.+|++|++.++. +.. ....+..+++|+.|+++.+.. ...++
T Consensus 590 ~Lr~L~~~~~~l~~l-P~~f--~~~~L~~L~L~~s~---------l~~-L~~~~~~l~~Lk~L~Ls~~~~-----l~~ip 651 (1153)
T PLN03210 590 KLRLLRWDKYPLRCM-PSNF--RPENLVKLQMQGSK---------LEK-LWDGVHSLTGLRNIDLRGSKN-----LKEIP 651 (1153)
T ss_pred ccEEEEecCCCCCCC-CCcC--CccCCcEEECcCcc---------ccc-cccccccCCCCCEEECCCCCC-----cCcCC
Confidence 466666654332221 0011 34567777777653 211 111234678889998865432 12222
Q ss_pred hHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHH
Q 011317 149 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 228 (488)
Q Consensus 149 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 228 (488)
+ ...+++|+.|++++|..+... +..+..+++|+.|++++|..+...+.. ..+++|+.|++++|..+...
T Consensus 652 ~------ls~l~~Le~L~L~~c~~L~~l--p~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL~~L~Lsgc~~L~~~ 720 (1153)
T PLN03210 652 D------LSMATNLETLKLSDCSSLVEL--PSSIQYLNKLEDLDMSRCENLEILPTG---INLKSLYRLNLSGCSRLKSF 720 (1153)
T ss_pred c------cccCCcccEEEecCCCCcccc--chhhhccCCCCEEeCCCCCCcCccCCc---CCCCCCCEEeCCCCCCcccc
Confidence 2 134788999999988665432 233466889999999988765543321 15678999999988655332
Q ss_pred HHHHhhCCCCcCEEeccCCCCCChHHHH-----------------------------hhcCCCCccEEEeCCCccchhHH
Q 011317 229 AIKSLASNTGIKVLDLRDCKNLGDEALR-----------------------------AISSLPQLKILLLDGSDISDVGV 279 (488)
Q Consensus 229 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----------------------------~l~~~~~L~~L~l~~~~i~~~~~ 279 (488)
+. ..++|+.|+++++. +...... .....++|+.|++++|.......
T Consensus 721 p~----~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP 795 (1153)
T PLN03210 721 PD----ISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP 795 (1153)
T ss_pred cc----ccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC
Confidence 11 23566777776542 2111000 00123456666666653222222
Q ss_pred HHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHH
Q 011317 280 SYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTS 359 (488)
Q Consensus 280 ~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 359 (488)
..+.. +++|+.|++++|..++. +.....+++|++|++++|..+... ....++|+.|+++++ .++...
T Consensus 796 ~si~~--L~~L~~L~Ls~C~~L~~-----LP~~~~L~sL~~L~Ls~c~~L~~~-----p~~~~nL~~L~Ls~n-~i~~iP 862 (1153)
T PLN03210 796 SSIQN--LHKLEHLEIENCINLET-----LPTGINLESLESLDLSGCSRLRTF-----PDISTNISDLNLSRT-GIEEVP 862 (1153)
T ss_pred hhhhC--CCCCCEEECCCCCCcCe-----eCCCCCccccCEEECCCCCccccc-----cccccccCEeECCCC-CCccCh
Confidence 22333 66777777777665442 111112366777777777554321 112356777777776 444211
Q ss_pred HHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCCCHH
Q 011317 360 VIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRD 417 (488)
Q Consensus 360 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~~~ 417 (488)
..+. .+++|+.|++++|.++..... ... .+++|+.+++++|....
T Consensus 863 -~si~---------~l~~L~~L~L~~C~~L~~l~~-~~~--~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 863 -WWIE---------KFSNLSFLDMNGCNNLQRVSL-NIS--KLKHLETVDFSDCGALT 907 (1153)
T ss_pred -HHHh---------cCCCCCEEECCCCCCcCccCc-ccc--cccCCCeeecCCCcccc
Confidence 1122 678899999999887776332 122 47888888888887543
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.36 E-value=2.3e-14 Score=136.21 Aligned_cols=270 Identities=18% Similarity=0.169 Sum_probs=148.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+..|+.|+|+.|.+.. ....+ .+.+++-+|+|++|. |....-+.+.++..|-.|+|+.+ +
T Consensus 102 l~dLt~lDLShNqL~E-vP~~L-E~AKn~iVLNLS~N~---------IetIPn~lfinLtDLLfLDLS~N---------r 161 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLRE-VPTNL-EYAKNSIVLNLSYNN---------IETIPNSLFINLTDLLFLDLSNN---------R 161 (1255)
T ss_pred cccceeeecchhhhhh-cchhh-hhhcCcEEEEcccCc---------cccCCchHHHhhHhHhhhccccc---------h
Confidence 4455555555544432 11111 245555566666552 32222223334455555555422 1
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+. .++.-...+..|++|+|++ +.+....+..+ -.+++|+.|.+++... +-..+......+.+|..++++. ++++
T Consensus 162 Le--~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQL-PsmtsL~vLhms~TqR-Tl~N~Ptsld~l~NL~dvDlS~-N~Lp 235 (1255)
T KOG0444|consen 162 LE--MLPPQIRRLSMLQTLKLSN-NPLNHFQLRQL-PSMTSLSVLHMSNTQR-TLDNIPTSLDDLHNLRDVDLSE-NNLP 235 (1255)
T ss_pred hh--hcCHHHHHHhhhhhhhcCC-ChhhHHHHhcC-ccchhhhhhhcccccc-hhhcCCCchhhhhhhhhccccc-cCCC
Confidence 11 1111223455677777776 34433333332 1244556666665332 1111222233445777777775 4444
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC----
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---- 302 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~---- 302 (488)
..+ ..+..+++|+.|+++++ .++...+ ....-.+|++|+++.|.++. -...+.. ++.|+.|.+.++ .++
T Consensus 236 ~vP-ecly~l~~LrrLNLS~N-~iteL~~-~~~~W~~lEtLNlSrNQLt~-LP~avcK--L~kL~kLy~n~N-kL~FeGi 308 (1255)
T KOG0444|consen 236 IVP-ECLYKLRNLRRLNLSGN-KITELNM-TEGEWENLETLNLSRNQLTV-LPDAVCK--LTKLTKLYANNN-KLTFEGI 308 (1255)
T ss_pred cch-HHHhhhhhhheeccCcC-ceeeeec-cHHHHhhhhhhccccchhcc-chHHHhh--hHHHHHHHhccC-cccccCC
Confidence 322 24557778888888774 4433221 12234567778888776653 2233444 778888888763 465
Q ss_pred HHHHHHHhccCCCCCeeEEecCCCCCCC--HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccE
Q 011317 303 DKCISALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRL 380 (488)
Q Consensus 303 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~ 380 (488)
+.++..+ .+|+.+..++ +.+. ++++. .|+.|+.|.++.|.-++-..... -++.|+.
T Consensus 309 PSGIGKL------~~Levf~aan-N~LElVPEglc----RC~kL~kL~L~~NrLiTLPeaIH-----------lL~~l~v 366 (1255)
T KOG0444|consen 309 PSGIGKL------IQLEVFHAAN-NKLELVPEGLC----RCVKLQKLKLDHNRLITLPEAIH-----------LLPDLKV 366 (1255)
T ss_pred ccchhhh------hhhHHHHhhc-cccccCchhhh----hhHHHHHhcccccceeechhhhh-----------hcCCcce
Confidence 3445555 6788888887 4544 77766 69999999999986565332222 4678999
Q ss_pred EeccCCCCCCH
Q 011317 381 LDLYNCGGITQ 391 (488)
Q Consensus 381 L~l~~~~~i~~ 391 (488)
|++..|+++-.
T Consensus 367 LDlreNpnLVM 377 (1255)
T KOG0444|consen 367 LDLRENPNLVM 377 (1255)
T ss_pred eeccCCcCccC
Confidence 99999997654
No 19
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.16 E-value=2.7e-10 Score=98.14 Aligned_cols=169 Identities=19% Similarity=0.190 Sum_probs=90.4
Q ss_pred hCCCCcCEEeccCCCCCChHHH----HhhcCCCCccEEEeCCCccchhHH-------HHHHh----hcCCCccEEecCCC
Q 011317 234 ASNTGIKVLDLRDCKNLGDEAL----RAISSLPQLKILLLDGSDISDVGV-------SYLRL----TVITSLVKLSLRGC 298 (488)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~i~~~~~-------~~l~~----~~~~~L~~L~l~~~ 298 (488)
.+||.|+..+++++ .+..... ..++..+.|.+|.+++|.+...+- .+++. +.-|.|++.....+
T Consensus 89 lkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 35666666666552 2222211 223355566666666664433211 11111 13456666666553
Q ss_pred CCCC---HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHH----hcCCCCCeEeecCCCCCCHHHHHHHHcccccCC
Q 011317 299 KRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA----TCRVPISELRVRQCPLIGDTSVIALASMLVDDD 371 (488)
Q Consensus 299 ~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 371 (488)
. +. ..-........ .+|+.+.+.+ +.|.+.|+..+. ..|.+|+.|++..| .++-.+-..++.++.
T Consensus 168 R-lengs~~~~a~~l~sh--~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~--- 239 (388)
T COG5238 168 R-LENGSKELSAALLESH--ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALC--- 239 (388)
T ss_pred h-hccCcHHHHHHHHHhh--cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhc---
Confidence 2 22 12222222222 5677777777 567766655441 24677888888777 666666666655444
Q ss_pred CCCCCCccEEeccCCCCCCHHHHHHhhc----cCCCCccEEEecCCC
Q 011317 372 RWYGSSIRLLDLYNCGGITQLAFRWLKK----PYFPRLRWLGVTGSV 414 (488)
Q Consensus 372 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~----~~~~~L~~L~l~~~~ 414 (488)
..+.|+.|.+.+|- ++..+...+.. ...|+|+.|...++.
T Consensus 240 --~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 240 --EWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred --ccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchhh
Confidence 56667888887776 66554443332 346777777766654
No 20
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.6e-11 Score=112.40 Aligned_cols=208 Identities=17% Similarity=0.165 Sum_probs=115.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhh-cCCCccEEEccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
+.+|+.+.|..+.+.........+.||+++.|+|+.|- -.....+..|. ++|+|+.|+++.+. +.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL--------~~nw~~v~~i~eqLp~Le~LNls~Nr------l~ 185 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL--------FHNWFPVLKIAEQLPSLENLNLSSNR------LS 185 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhh--------HHhHHHHHHHHHhcccchhccccccc------cc
Confidence 66777777776666665554555677788888877762 12223333333 77777777776432 11
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
...+.... ..+++|+.|.|+.| +++...+..+...+|+|+.|.+..+..+...... ......|++|++++.+.+
T Consensus 186 ~~~~s~~~---~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 186 NFISSNTT---LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLI 259 (505)
T ss_pred CCccccch---hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccc
Confidence 11111111 13566777777776 6666667777777777777777765322111111 112346777777775555
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHH------hhcCCCCccEEEeCCCccchh-HHHHHHhhcCCCccEEecCC
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALR------AISSLPQLKILLLDGSDISDV-GVSYLRLTVITSLVKLSLRG 297 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------~l~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~~L~~L~l~~ 297 (488)
........+.+|.|+.|.++.| .+.+.... ....+|+|+.|++..|++.+- .+..+-. +++|+.|.+..
T Consensus 260 ~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~--l~nlk~l~~~~ 335 (505)
T KOG3207|consen 260 DFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT--LENLKHLRITL 335 (505)
T ss_pred ccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhc--cchhhhhhccc
Confidence 4444445556777777777664 33322111 123566777777777666432 2222222 45555555543
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.08 E-value=9e-12 Score=124.07 Aligned_cols=127 Identities=22% Similarity=0.251 Sum_probs=66.6
Q ss_pred CCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC--CCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHh
Q 011317 262 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC--KRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 339 (488)
Q Consensus 262 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~--~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 339 (488)
+.|+.|.+.+|.+++..+..+.. .++|+.|+++++ +.+.+..+..+ +.|++|+++| +.++.-. ..++
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~--~~hLKVLhLsyNrL~~fpas~~~kl------e~LeeL~LSG-NkL~~Lp-~tva- 427 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVN--FKHLKVLHLSYNRLNSFPASKLRKL------EELEELNLSG-NKLTTLP-DTVA- 427 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhcc--ccceeeeeecccccccCCHHHHhch------HHhHHHhccc-chhhhhh-HHHH-
Confidence 44556666666666665555544 666666666664 22334444444 5666666666 4554222 1111
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.|+.|+.|...+| .+.- +..++ .++.|+.+|++.|. ++...+..... .|+||+|+++||.
T Consensus 428 ~~~~L~tL~ahsN-~l~~--fPe~~---------~l~qL~~lDlS~N~-L~~~~l~~~~p--~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSN-QLLS--FPELA---------QLPQLKVLDLSCNN-LSEVTLPEALP--SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhHHHhhcCC-ceee--chhhh---------hcCcceEEecccch-hhhhhhhhhCC--CcccceeeccCCc
Confidence 3555666655555 2221 22333 45666666666655 55544443332 3566666666665
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6.8e-11 Score=108.40 Aligned_cols=218 Identities=21% Similarity=0.201 Sum_probs=112.7
Q ss_pred HhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCH-HHHHHhhC
Q 011317 157 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTN-HAIKSLAS 235 (488)
Q Consensus 157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~ 235 (488)
+++.+|+.+.|.++ .+...+.....+.|++++.|+++++-.....++..++..+|+|+.|+++.. .+.. .....
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~--- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNT--- 192 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccc---
Confidence 45667777777774 555554444556778888888877655555666667777777777777663 2210 00000
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 315 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 315 (488)
-..+++|+.|.|+.|+++......+.. .+|+|+.|.+.++..+.......- .+
T Consensus 193 ----------------------~~~l~~lK~L~l~~CGls~k~V~~~~~-~fPsl~~L~L~~N~~~~~~~~~~~----i~ 245 (505)
T KOG3207|consen 193 ----------------------TLLLSHLKQLVLNSCGLSWKDVQWILL-TFPSLEVLYLEANEIILIKATSTK----IL 245 (505)
T ss_pred ----------------------hhhhhhhheEEeccCCCCHHHHHHHHH-hCCcHHHhhhhcccccceecchhh----hh
Confidence 003345566666666666555555544 566666666666432221111110 11
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCH-HHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAF 394 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~ 394 (488)
..|++|+|++.+.++-......+ .+|.|+.|+++.| .+.+............ ..+++|++|++..|+ |.+ ..+
T Consensus 246 ~~L~~LdLs~N~li~~~~~~~~~-~l~~L~~Lnls~t-gi~si~~~d~~s~~kt---~~f~kL~~L~i~~N~-I~~w~sl 319 (505)
T KOG3207|consen 246 QTLQELDLSNNNLIDFDQGYKVG-TLPGLNQLNLSST-GIASIAEPDVESLDKT---HTFPKLEYLNISENN-IRDWRSL 319 (505)
T ss_pred hHHhhccccCCcccccccccccc-cccchhhhhcccc-CcchhcCCCccchhhh---cccccceeeecccCc-ccccccc
Confidence 45666677664444322222222 4666666666666 3333222111000000 056677777777766 322 334
Q ss_pred HHhhccCCCCccEEEecCCC
Q 011317 395 RWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 395 ~~l~~~~~~~L~~L~l~~~~ 414 (488)
.++.. .++|++|.+..+.
T Consensus 320 ~~l~~--l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 320 NHLRT--LENLKHLRITLNY 337 (505)
T ss_pred chhhc--cchhhhhhccccc
Confidence 44432 5566666655443
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.89 E-value=1.3e-10 Score=116.10 Aligned_cols=128 Identities=21% Similarity=0.272 Sum_probs=85.9
Q ss_pred CCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHhccCC
Q 011317 237 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGTS 314 (488)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~ 314 (488)
+.|+.|.+.+ +.+++..+..+.++++|+.|+|++|.+....-..+.. +..|+.|.++|+ .++ ++.+...
T Consensus 359 ~~Lq~Lylan-N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k--le~LeeL~LSGN-kL~~Lp~tva~~----- 429 (1081)
T KOG0618|consen 359 AALQELYLAN-NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK--LEELEELNLSGN-KLTTLPDTVANL----- 429 (1081)
T ss_pred HHHHHHHHhc-CcccccchhhhccccceeeeeecccccccCCHHHHhc--hHHhHHHhcccc-hhhhhhHHHHhh-----
Confidence 4455566666 4677777777778889999999988766544444444 777888999884 455 3333333
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCC
Q 011317 315 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 388 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 388 (488)
++|++|...+ +.+.... .++ .++.|+.++++.| .++...+.... ..|+|++|+++||..
T Consensus 430 -~~L~tL~ahs-N~l~~fP--e~~-~l~qL~~lDlS~N-~L~~~~l~~~~---------p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 430 -GRLHTLRAHS-NQLLSFP--ELA-QLPQLKVLDLSCN-NLSEVTLPEAL---------PSPNLKYLDLSGNTR 488 (1081)
T ss_pred -hhhHHHhhcC-Cceeech--hhh-hcCcceEEecccc-hhhhhhhhhhC---------CCcccceeeccCCcc
Confidence 7788887776 4443111 222 4788999999877 77766665544 347899999998873
No 24
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.87 E-value=1.1e-07 Score=82.22 Aligned_cols=158 Identities=21% Similarity=0.197 Sum_probs=105.6
Q ss_pred HhhcCCCCccEEEeCCCccchhHH---HHHHhhcCCCccEEecCCCCCCCHHH-------HHHHhc---cCCCCCeeEEe
Q 011317 256 RAISSLPQLKILLLDGSDISDVGV---SYLRLTVITSLVKLSLRGCKRLTDKC-------ISALFD---GTSKLQLQELD 322 (488)
Q Consensus 256 ~~l~~~~~L~~L~l~~~~i~~~~~---~~l~~~~~~~L~~L~l~~~~~l~~~~-------~~~l~~---~~~~~~L~~L~ 322 (488)
.++..||.|+..++++|.+..... ..+.. ..+.|.+|.+.+|. +.+.+ +..++. ...-|.|+++.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is-~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLIS-SSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHh-cCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 455689999999999996665433 33333 57899999999874 55322 222221 12228899999
Q ss_pred cCCCCCCC---HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc
Q 011317 323 LSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK 399 (488)
Q Consensus 323 l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~ 399 (488)
... +.+. ..-.....+.-.+|+.+.+..| .|...|+..++..-.. ++++|+.|++.+|. ++..+-..+..
T Consensus 164 cgr-NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~----y~~~LevLDlqDNt-ft~~gS~~La~ 236 (388)
T COG5238 164 CGR-NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLF----YSHSLEVLDLQDNT-FTLEGSRYLAD 236 (388)
T ss_pred ecc-chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHH----HhCcceeeeccccc-hhhhhHHHHHH
Confidence 887 4443 2223333333368999999999 8888877665432111 79999999999998 88776665554
Q ss_pred c--CCCCccEEEecCCC-CHHHHHHH
Q 011317 400 P--YFPRLRWLGVTGSV-NRDILDAL 422 (488)
Q Consensus 400 ~--~~~~L~~L~l~~~~-~~~~~~~~ 422 (488)
+ .++.|+.|.+..|. +...+.++
T Consensus 237 al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred HhcccchhhhccccchhhccccHHHH
Confidence 2 36789999999995 33344443
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.84 E-value=8.7e-09 Score=105.54 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=6.8
Q ss_pred CCCccEEEecCCC
Q 011317 402 FPRLRWLGVTGSV 414 (488)
Q Consensus 402 ~~~L~~L~l~~~~ 414 (488)
+++|+.|++++|+
T Consensus 444 L~~L~~LdLs~N~ 456 (788)
T PRK15387 444 LSSETTVNLEGNP 456 (788)
T ss_pred ccCCCeEECCCCC
Confidence 4455555555554
No 26
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.83 E-value=1.4e-08 Score=103.56 Aligned_cols=160 Identities=21% Similarity=0.245 Sum_probs=84.0
Q ss_pred CCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhccC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGT 313 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~ 313 (488)
-.+|++|+++|...+.......++ .+|+|++|.+++-.+....+..+.. ++|+|..|++++++ ++ -.|+..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~-sFpNL~sLDIS~Tn-I~nl~GIS~L---- 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCA-SFPNLRSLDISGTN-ISNLSGISRL---- 194 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhh-ccCccceeecCCCC-ccCcHHHhcc----
Confidence 345666666654444333344444 4566666666665555555555555 56666666666643 33 2444444
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
++|+.|.+.+..-.+...+..+. ++++|+.|||+.-....+. .+........ .+|+|+.||.++.. ++..
T Consensus 195 --knLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~-----~LpeLrfLDcSgTd-i~~~ 265 (699)
T KOG3665|consen 195 --KNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGM-----VLPELRFLDCSGTD-INEE 265 (699)
T ss_pred --ccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcc-----cCccccEEecCCcc-hhHH
Confidence 66666666664333334455555 3666666666655433332 1221111111 56666666666665 6666
Q ss_pred HHHHhhccCCCCccEEEec
Q 011317 393 AFRWLKKPYFPRLRWLGVT 411 (488)
Q Consensus 393 ~~~~l~~~~~~~L~~L~l~ 411 (488)
.+..+.. ..|+|+.+.+-
T Consensus 266 ~le~ll~-sH~~L~~i~~~ 283 (699)
T KOG3665|consen 266 ILEELLN-SHPNLQQIAAL 283 (699)
T ss_pred HHHHHHH-hCccHhhhhhh
Confidence 6655555 45555555544
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.81 E-value=3.7e-09 Score=108.19 Aligned_cols=245 Identities=19% Similarity=0.179 Sum_probs=145.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|+.|.+..|.++.. ....++|++|++++|. ++. ++. ..++|+.|+++.+ .
T Consensus 221 ~~~L~~L~L~~N~Lt~L-----P~lp~~Lk~LdLs~N~---------Lts--LP~--lp~sL~~L~Ls~N---------~ 273 (788)
T PRK15387 221 PAHITTLVIPDNNLTSL-----PALPPELRTLEVSGNQ---------LTS--LPV--LPPGLLELSIFSN---------P 273 (788)
T ss_pred hcCCCEEEccCCcCCCC-----CCCCCCCcEEEecCCc---------cCc--ccC--cccccceeeccCC---------c
Confidence 45788888887766641 1245788888888873 332 111 2357788887532 1
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
++ .+....++|+.|+++++ .+... + ...++|+.|+++++. +...+ ....+|+.|.++++ .+.
T Consensus 274 L~-----~Lp~lp~~L~~L~Ls~N-~Lt~L--P---~~p~~L~~LdLS~N~-L~~Lp-----~lp~~L~~L~Ls~N-~L~ 335 (788)
T PRK15387 274 LT-----HLPALPSGLCKLWIFGN-QLTSL--P---VLPPGLQELSVSDNQ-LASLP-----ALPSELCKLWAYNN-QLT 335 (788)
T ss_pred hh-----hhhhchhhcCEEECcCC-ccccc--c---ccccccceeECCCCc-cccCC-----CCcccccccccccC-ccc
Confidence 21 11122356888888873 55432 1 234678888888764 32211 12246777877774 443
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
..+ . ...+|+.|+++++ .+.... . ..++|+.|++++|.+... . . ..++|+.|+++++. ++. +
T Consensus 336 ~LP--~--lp~~Lq~LdLS~N-~Ls~LP--~--lp~~L~~L~Ls~N~L~~L--P---~-l~~~L~~LdLs~N~-Lt~--L 397 (788)
T PRK15387 336 SLP--T--LPSGLQELSVSDN-QLASLP--T--LPSELYKLWAYNNRLTSL--P---A-LPSGLKELIVSGNR-LTS--L 397 (788)
T ss_pred ccc--c--cccccceEecCCC-ccCCCC--C--CCcccceehhhccccccC--c---c-cccccceEEecCCc-ccC--C
Confidence 211 1 2247889999884 444321 1 235788888888876631 1 1 24578999998853 441 1
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
... .++|+.|+++++ .++. +. ....+|+.|++++| .++... ..+. .+++|+.|++++|
T Consensus 398 P~l-----~s~L~~LdLS~N-~Lss--IP---~l~~~L~~L~Ls~N-qLt~LP-~sl~---------~L~~L~~LdLs~N 455 (788)
T PRK15387 398 PVL-----PSELKELMVSGN-RLTS--LP---MLPSGLLSLSVYRN-QLTRLP-ESLI---------HLSSETTVNLEGN 455 (788)
T ss_pred CCc-----ccCCCEEEccCC-cCCC--CC---cchhhhhhhhhccC-cccccC-hHHh---------hccCCCeEECCCC
Confidence 111 168999999984 5552 11 11346888999888 565211 1222 6788999999999
Q ss_pred CCCCHHHHHHh
Q 011317 387 GGITQLAFRWL 397 (488)
Q Consensus 387 ~~i~~~~~~~l 397 (488)
+ ++...+..+
T Consensus 456 ~-Ls~~~~~~L 465 (788)
T PRK15387 456 P-LSERTLQAL 465 (788)
T ss_pred C-CCchHHHHH
Confidence 8 887666555
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.81 E-value=2.2e-08 Score=102.15 Aligned_cols=213 Identities=19% Similarity=0.212 Sum_probs=142.6
Q ss_pred CCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccc--cChH-HHHh-hh--cCCCccEEEccccccccc
Q 011317 68 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFD--LTNS-GLQQ-IN--QHGKLKHLSLIRSQEFLI 141 (488)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~-~l~~-l~--~~~~L~~L~l~~~~~~~~ 141 (488)
-++...++.........++.+.+ ..|+++.+.+......+.... +... -+.. +. .-.+|++|++++
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G------ 131 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRK--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISG------ 131 (699)
T ss_pred heeEEeeccceecchhHHHHHhh--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccc------
Confidence 36777788777777777776653 339999988754332221111 1100 1111 11 346899999964
Q ss_pred ccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecC
Q 011317 142 TYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRW 221 (488)
Q Consensus 142 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 221 (488)
...+...+...++..+|+|++|.+++ ..+....+..++.++|+|..|+++++. +++. .-.+.+++|+.|.+.+
T Consensus 132 --~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 132 --SELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNLQVLSMRN 204 (699)
T ss_pred --cchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc---HHHhccccHHHHhccC
Confidence 44556667777888899999999998 566666688888899999999999854 4433 2344677888888887
Q ss_pred CCCCCHHHHHHhhCCCCcCEEeccCCCCCChH-----HHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecC
Q 011317 222 CNLLTNHAIKSLASNTGIKVLDLRDCKNLGDE-----ALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR 296 (488)
Q Consensus 222 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~ 296 (488)
-.......+..+..+++|+.||+|........ .++.-..+|+|+.|+.+++.+....+..+.. .-|+|+.+.+-
T Consensus 205 Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~-sH~~L~~i~~~ 283 (699)
T KOG3665|consen 205 LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN-SHPNLQQIAAL 283 (699)
T ss_pred CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH-hCccHhhhhhh
Confidence 54444456667778999999999875443333 1122236889999999998888887777766 56666666544
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.63 E-value=3.5e-09 Score=96.15 Aligned_cols=259 Identities=15% Similarity=0.151 Sum_probs=129.5
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
.+++|+.|+|+.|.|......++. .+++|..|-+.++. .|++..-..|+.+..|+.|.+..++ +.
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~-GL~~l~~Lvlyg~N--------kI~~l~k~~F~gL~slqrLllNan~------i~ 153 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFK-GLASLLSLVLYGNN--------KITDLPKGAFGGLSSLQRLLLNANH------IN 153 (498)
T ss_pred chhhhceecccccchhhcChHhhh-hhHhhhHHHhhcCC--------chhhhhhhHhhhHHHHHHHhcChhh------hc
Confidence 367888888887777766555553 67777777777642 3666555566677777777775432 33
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
.+-.. ....+++|..|.+.+ +.+... ....+..+..++.+.+..+..+.+=.+....... .-.....++..-.
T Consensus 154 Cir~~----al~dL~~l~lLslyD-n~~q~i-~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~-a~~~ietsgarc~ 226 (498)
T KOG4237|consen 154 CIRQD----ALRDLPSLSLLSLYD-NKIQSI-CKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL-AMNPIETSGARCV 226 (498)
T ss_pred chhHH----HHHHhhhcchhcccc-hhhhhh-ccccccchhccchHhhhcCccccccccchhhhHH-hhchhhcccceec
Confidence 33222 234466777777766 232211 1212344566777766655422211111000000 0000001110000
Q ss_pred CHHHHHH--hh------CCCCcCEE--ec-cCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEe
Q 011317 226 TNHAIKS--LA------SNTGIKVL--DL-RDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLS 294 (488)
Q Consensus 226 ~~~~~~~--l~------~~~~L~~L--~l-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~ 294 (488)
....+.. +. ...+++.+ .+ +.|.-...-....+..+++|++|++++|.++...-..+.. ...++.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~--~a~l~eL~ 304 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG--AAELQELY 304 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc--hhhhhhhh
Confidence 0000000 00 01112222 11 1221222223345667888888888888776655554444 67788888
Q ss_pred cCCCCCCC---HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCH
Q 011317 295 LRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD 357 (488)
Q Consensus 295 l~~~~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 357 (488)
+..+. +. ...+..+ ..|++|+|++ ++|+--...++. .+.+|.+|++-+|+.--+
T Consensus 305 L~~N~-l~~v~~~~f~~l------s~L~tL~L~~-N~it~~~~~aF~-~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 305 LTRNK-LEFVSSGMFQGL------SGLKTLSLYD-NQITTVAPGAFQ-TLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred cCcch-HHHHHHHhhhcc------ccceeeeecC-CeeEEEeccccc-ccceeeeeehccCcccCc
Confidence 87642 33 2222222 6788888888 566633222222 466788888876654333
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=1.8e-07 Score=82.11 Aligned_cols=228 Identities=18% Similarity=0.109 Sum_probs=138.7
Q ss_pred CCEEEEcCCCCCC-HHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHh-hCCCCc
Q 011317 162 MESICLGGFCRVT-DTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL-ASNTGI 239 (488)
Q Consensus 162 L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L 239 (488)
++-|.+.+| .+. ......+...++.++.+++.++..-....+..+..++|.|+.|+++. +.+... +..+ .+..+|
T Consensus 47 ~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~-I~~lp~p~~nl 123 (418)
T KOG2982|consen 47 LELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSSD-IKSLPLPLKNL 123 (418)
T ss_pred hhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCCc-cccCcccccce
Confidence 455666665 343 33355566678899999999887666778888999999999999987 444322 3333 367799
Q ss_pred CEEeccCCCCCChHHHHh-hcCCCCccEEEeCCCcc-----chhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC
Q 011317 240 KVLDLRDCKNLGDEALRA-ISSLPQLKILLLDGSDI-----SDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 313 (488)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~i-----~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 313 (488)
+.|.+.|. .+....... +..+|.++.|.++.|++ .+..... ..+.+++|++.+|....-.....+.+..
T Consensus 124 ~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~----~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 124 RVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED----WSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred EEEEEcCC-CCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc----cchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 99999884 555554443 34788888888887732 2222221 2346777777776533333333333323
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
|++..+.+..|+ +.+..-..-....|.+-.|+++.+ ++++. ++.++. .++.|.-|.+++++ +.+.
T Consensus 199 --pnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln---------~f~~l~dlRv~~~P-l~d~ 264 (418)
T KOG2982|consen 199 --PNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALN---------GFPQLVDLRVSENP-LSDP 264 (418)
T ss_pred --ccchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHc---------CCchhheeeccCCc-cccc
Confidence 788888887764 222222222224666777777776 55443 444554 67888888888877 4442
Q ss_pred HH----HHhhccCCCCccEEEec
Q 011317 393 AF----RWLKKPYFPRLRWLGVT 411 (488)
Q Consensus 393 ~~----~~l~~~~~~~L~~L~l~ 411 (488)
-- .++.-+.+++++.|+=+
T Consensus 265 l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 265 LRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred ccCCcceEEEEeeccceEEecCc
Confidence 11 12222346666666544
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.47 E-value=1.3e-08 Score=92.50 Aligned_cols=84 Identities=20% Similarity=0.154 Sum_probs=42.0
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 395 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 395 (488)
++|++|++++ +.++...-.++. ....+++|.+..| ++....-. +.. .+.+|+.|++++|+ |+-....
T Consensus 274 ~~L~~lnlsn-N~i~~i~~~aFe-~~a~l~eL~L~~N-~l~~v~~~-~f~--------~ls~L~tL~L~~N~-it~~~~~ 340 (498)
T KOG4237|consen 274 PNLRKLNLSN-NKITRIEDGAFE-GAAELQELYLTRN-KLEFVSSG-MFQ--------GLSGLKTLSLYDNQ-ITTVAPG 340 (498)
T ss_pred ccceEeccCC-Cccchhhhhhhc-chhhhhhhhcCcc-hHHHHHHH-hhh--------ccccceeeeecCCe-eEEEecc
Confidence 6666666666 455422222221 3455666666665 33221111 111 45566666666666 5554444
Q ss_pred HhhccCCCCccEEEecCCC
Q 011317 396 WLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 396 ~l~~~~~~~L~~L~l~~~~ 414 (488)
.|.. ..+|..|.+-+++
T Consensus 341 aF~~--~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 341 AFQT--LFSLSTLNLLSNP 357 (498)
T ss_pred cccc--cceeeeeehccCc
Confidence 4443 4566666665554
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.46 E-value=5.6e-07 Score=92.95 Aligned_cols=151 Identities=13% Similarity=0.082 Sum_probs=71.1
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCcc
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 291 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~ 291 (488)
++|+.|+++++ .+...+. . ..++|+.|+++++ .+..... .-.++|+.|++++|.++.... . -+++|+
T Consensus 283 ~sL~~L~Ls~N-~Lt~LP~-~--lp~sL~~L~Ls~N-~Lt~LP~---~l~~sL~~L~Ls~N~Lt~LP~-~----l~~sL~ 349 (754)
T PRK15370 283 EELRYLSVYDN-SIRTLPA-H--LPSGITHLNVQSN-SLTALPE---TLPPGLKTLEAGENALTSLPA-S----LPPELQ 349 (754)
T ss_pred CCCcEEECCCC-ccccCcc-c--chhhHHHHHhcCC-ccccCCc---cccccceeccccCCccccCCh-h----hcCccc
Confidence 35666666653 3322110 0 1234566666653 2322111 012466677776665543211 0 135677
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHH--HHHHHHccccc
Q 011317 292 KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDT--SVIALASMLVD 369 (488)
Q Consensus 292 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~ 369 (488)
.|++++|. ++.-. ..+. ++|++|++++| .++.-. ..+. ++|+.|++++| .++.. .+..+..
T Consensus 350 ~L~Ls~N~-L~~LP-~~lp-----~~L~~LdLs~N-~Lt~LP-~~l~---~sL~~LdLs~N-~L~~LP~sl~~~~~---- 412 (754)
T PRK15370 350 VLDVSKNQ-ITVLP-ETLP-----PTITTLDVSRN-ALTNLP-ENLP---AALQIMQASRN-NLVRLPESLPHFRG---- 412 (754)
T ss_pred EEECCCCC-CCcCC-hhhc-----CCcCEEECCCC-cCCCCC-HhHH---HHHHHHhhccC-CcccCchhHHHHhh----
Confidence 77777653 33100 0111 56777777774 443110 0111 24666777766 44321 2233332
Q ss_pred CCCCCCCCccEEeccCCCCCCHHHHHHh
Q 011317 370 DDRWYGSSIRLLDLYNCGGITQLAFRWL 397 (488)
Q Consensus 370 ~~~~~~~~L~~L~l~~~~~i~~~~~~~l 397 (488)
.++++..|++.+|+ ++...+..+
T Consensus 413 ----~~~~l~~L~L~~Np-ls~~tl~~L 435 (754)
T PRK15370 413 ----EGPQPTRIIVEYNP-FSERTIQNM 435 (754)
T ss_pred ----cCCCccEEEeeCCC-ccHHHHHHH
Confidence 45667777777776 665555544
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=1.5e-07 Score=82.53 Aligned_cols=191 Identities=16% Similarity=0.126 Sum_probs=110.7
Q ss_pred HHHHHHhCCCCCEEEEcCCCCCCH-HHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHH
Q 011317 152 ILLMADKCASMESICLGGFCRVTD-TGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAI 230 (488)
Q Consensus 152 l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 230 (488)
+..+...++.++.|+|.+ +.+++ ..+..+++++|.|+.|+++.+.--+ .+..+.....+|+.|-+.+. .++-...
T Consensus 63 ~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s--~I~~lp~p~~nl~~lVLNgT-~L~w~~~ 138 (418)
T KOG2982|consen 63 VMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSS--DIKSLPLPLKNLRVLVLNGT-GLSWTQS 138 (418)
T ss_pred HHHHHHHhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCC--ccccCcccccceEEEEEcCC-CCChhhh
Confidence 445666788888888888 56664 3467778888999999988665321 12222223458888888874 4432222
Q ss_pred -HHhhCCCCcCEEeccCCCCCChHHHH--hhc-CCCCccEEEeCCCccch-hHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011317 231 -KSLASNTGIKVLDLRDCKNLGDEALR--AIS-SLPQLKILLLDGSDISD-VGVSYLRLTVITSLVKLSLRGCKRLTDKC 305 (488)
Q Consensus 231 -~~l~~~~~L~~L~l~~~~~~~~~~~~--~l~-~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 305 (488)
..+..+|.++.|+++.+ +....... ... --+.+++|...+|.... .....+.. .+|++..+.+..|+ +.+..
T Consensus 139 ~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-~Fpnv~sv~v~e~P-lK~~s 215 (418)
T KOG2982|consen 139 TSSLDDLPKVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-IFPNVNSVFVCEGP-LKTES 215 (418)
T ss_pred hhhhhcchhhhhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-hcccchheeeecCc-ccchh
Confidence 22446788888888764 11111110 011 22456666666663321 11222333 57888888887775 33222
Q ss_pred HHHHhccCCCCCeeEEecCCCCCCC-HHHHHHHHhcCCCCCeEeecCCC
Q 011317 306 ISALFDGTSKLQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQCP 353 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~ 353 (488)
-..-. -++|.+..|.++. +++. ..++.++. .++.|+.|.+..++
T Consensus 216 ~ek~s--e~~p~~~~LnL~~-~~idswasvD~Ln-~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 216 SEKGS--EPFPSLSCLNLGA-NNIDSWASVDALN-GFPQLVDLRVSENP 260 (418)
T ss_pred hcccC--CCCCcchhhhhcc-cccccHHHHHHHc-CCchhheeeccCCc
Confidence 11111 1226777778877 4555 55666666 48888888888885
No 34
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.41 E-value=2e-08 Score=91.46 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=26.3
Q ss_pred CCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 374 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 374 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+.+|..|++.+|. +... ...+. .|.+|++|.++|++
T Consensus 503 nm~nL~tLDL~nNd-lq~I-Pp~Lg--nmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 503 NMRNLTTLDLQNND-LQQI-PPILG--NMTNLRHLELDGNP 539 (565)
T ss_pred hhhhcceeccCCCc-hhhC-Chhhc--cccceeEEEecCCc
Confidence 45678899998887 3321 22333 48999999999997
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.40 E-value=3.1e-08 Score=82.87 Aligned_cols=127 Identities=25% Similarity=0.296 Sum_probs=31.9
Q ss_pred CccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC
Q 011317 263 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR 341 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 341 (488)
.+++|+|.++.|+.. ..+.. .+.+|+.|++++|. ++ -+++..+ ++|++|++++ +.++.-+- .+...+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~-~l~~L~~L~Ls~N~-I~~l~~l~~L------~~L~~L~L~~-N~I~~i~~-~l~~~l 87 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGA-TLDKLEVLDLSNNQ-ITKLEGLPGL------PRLKTLDLSN-NRISSISE-GLDKNL 87 (175)
T ss_dssp ------------------S--T-T-TT--EEE-TTS---S--TT----------TT--EEE--S-S---S-CH-HHHHH-
T ss_pred ccccccccccccccc--cchhh-hhcCCCEEECCCCC-CccccCccCh------hhhhhcccCC-CCCCcccc-chHHhC
Confidence 345555555544321 11221 24455555555543 22 2223333 5566666665 44443211 111235
Q ss_pred CCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCCH-HHHHHhhccCCCCccEEEecC
Q 011317 342 VPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTG 412 (488)
Q Consensus 342 ~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~ 412 (488)
|+|+.|.+++| ++.+. .+..+. .+|+|+.|++.+|+ ++. ...+.+.-..+|+|+.|+-..
T Consensus 88 p~L~~L~L~~N-~I~~l~~l~~L~---------~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 88 PNLQELYLSNN-KISDLNELEPLS---------SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TT--EEE-TTS----SCCCCGGGG---------G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCEEECcCC-cCCChHHhHHHH---------cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEE
Confidence 66666666665 33321 112222 45666666666666 332 112221111366666665443
No 36
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.38 E-value=7.6e-08 Score=87.85 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=64.5
Q ss_pred HHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHhccCCCCCeeEEecCCCCCCC--
Q 011317 255 LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGTSKLQLQELDLSNLPHLS-- 330 (488)
Q Consensus 255 ~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~~~L~~L~l~~~~~l~-- 330 (488)
...++.+++|..|++++|-+.+-... ++. +..|+.|+++.+. .. +..+..+ ..++.+-.++ +++.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~--lv~Lq~LnlS~Nr-Fr~lP~~~y~l------q~lEtllas~-nqi~~v 496 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLNDLPEE-MGS--LVRLQTLNLSFNR-FRMLPECLYEL------QTLETLLASN-NQIGSV 496 (565)
T ss_pred hHHHHhhhcceeeecccchhhhcchh-hhh--hhhhheecccccc-cccchHHHhhH------HHHHHHHhcc-cccccc
Confidence 34566788888888888755543333 222 5668888888752 22 3333333 3344444443 3433
Q ss_pred -HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCC
Q 011317 331 -DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 390 (488)
Q Consensus 331 -~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 390 (488)
+.++. ++.+|..|++.+| .+. .+.-... ++.+|++|.+++|+ +.
T Consensus 497 d~~~l~----nm~nL~tLDL~nN-dlq--~IPp~Lg--------nmtnL~hLeL~gNp-fr 541 (565)
T KOG0472|consen 497 DPSGLK----NMRNLTTLDLQNN-DLQ--QIPPILG--------NMTNLRHLELDGNP-FR 541 (565)
T ss_pred ChHHhh----hhhhcceeccCCC-chh--hCChhhc--------cccceeEEEecCCc-cC
Confidence 44444 5778888888877 322 1222222 78889999999888 54
No 37
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=5.6e-07 Score=74.75 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=80.8
Q ss_pred CeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHH
Q 011317 317 QLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRW 396 (488)
Q Consensus 317 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 396 (488)
.++.++-+++ .|..+|+..+. .++.++.|.+.+|..+.|.++..+.. ..++|+.|+|++|+.||+.++..
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~--------~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGG--------LAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcc--------cccchheeeccCCCeechhHHHH
Confidence 5677787774 77778887776 48888888898998899999988887 67889999999999999998888
Q ss_pred hhccCCCCccEEEecCCC---CHH-HHHHHHhhCCCceee
Q 011317 397 LKKPYFPRLRWLGVTGSV---NRD-ILDALARSRPFLNVA 432 (488)
Q Consensus 397 l~~~~~~~L~~L~l~~~~---~~~-~~~~~~~~~~~l~~~ 432 (488)
+.. +++|+.|.+.+-+ ..+ ....+....|+..+-
T Consensus 172 L~~--lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 172 LLK--LKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHH--hhhhHHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 876 8899998888765 222 334456677866654
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.36 E-value=1.3e-06 Score=90.40 Aligned_cols=247 Identities=15% Similarity=0.151 Sum_probs=141.3
Q ss_pred CCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCC
Q 011317 93 VSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCR 172 (488)
Q Consensus 93 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 172 (488)
.+...|+++++. ++... ..+ .++|+.|+++++. ...+... .+++|+.|+++++ .
T Consensus 178 ~~~~~L~L~~~~---------LtsLP-~~I--p~~L~~L~Ls~N~------LtsLP~~-------l~~nL~~L~Ls~N-~ 231 (754)
T PRK15370 178 NNKTELRLKILG---------LTTIP-ACI--PEQITTLILDNNE------LKSLPEN-------LQGNIKTLYANSN-Q 231 (754)
T ss_pred cCceEEEeCCCC---------cCcCC-ccc--ccCCcEEEecCCC------CCcCChh-------hccCCCEEECCCC-c
Confidence 457778887752 33210 011 2468888886432 2222211 1357888888874 5
Q ss_pred CCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCCh
Q 011317 173 VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGD 252 (488)
Q Consensus 173 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 252 (488)
++.. ...+ .++|+.|++++|. +...+.. + ..+|+.|++++ +.+...+- . -+++|+.|+++++ .++.
T Consensus 232 LtsL-P~~l---~~~L~~L~Ls~N~-L~~LP~~-l---~s~L~~L~Ls~-N~L~~LP~-~--l~~sL~~L~Ls~N-~Lt~ 297 (754)
T PRK15370 232 LTSI-PATL---PDTIQEMELSINR-ITELPER-L---PSALQSLDLFH-NKISCLPE-N--LPEELRYLSVYDN-SIRT 297 (754)
T ss_pred cccC-Chhh---hccccEEECcCCc-cCcCChh-H---hCCCCEEECcC-CccCcccc-c--cCCCCcEEECCCC-cccc
Confidence 5422 1111 2478888888765 3322111 1 24788999886 45543211 1 2358999999885 4442
Q ss_pred HHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHH
Q 011317 253 EALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDN 332 (488)
Q Consensus 253 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~ 332 (488)
... .+ .++|+.|++++|.++..... ..++|+.|.+++|. ++.-. ..+ .++|+.|+++++ +++..
T Consensus 298 LP~-~l--p~sL~~L~Ls~N~Lt~LP~~-----l~~sL~~L~Ls~N~-Lt~LP-~~l-----~~sL~~L~Ls~N-~L~~L 361 (754)
T PRK15370 298 LPA-HL--PSGITHLNVQSNSLTALPET-----LPPGLKTLEAGENA-LTSLP-ASL-----PPELQVLDVSKN-QITVL 361 (754)
T ss_pred Ccc-cc--hhhHHHHHhcCCccccCCcc-----ccccceeccccCCc-cccCC-hhh-----cCcccEEECCCC-CCCcC
Confidence 211 11 24688888888877632211 24678999998864 43210 011 168999999985 55521
Q ss_pred HHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH--HHHHhhccCCCCccEEEe
Q 011317 333 GILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL--AFRWLKKPYFPRLRWLGV 410 (488)
Q Consensus 333 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~--~~~~l~~~~~~~L~~L~l 410 (488)
. .. -.++|+.|+|++| .++... ..+. ++|+.|++++|. ++.. .+..+.. .+|++..|++
T Consensus 362 P-~~---lp~~L~~LdLs~N-~Lt~LP-~~l~-----------~sL~~LdLs~N~-L~~LP~sl~~~~~-~~~~l~~L~L 422 (754)
T PRK15370 362 P-ET---LPPTITTLDVSRN-ALTNLP-ENLP-----------AALQIMQASRNN-LVRLPESLPHFRG-EGPQPTRIIV 422 (754)
T ss_pred C-hh---hcCCcCEEECCCC-cCCCCC-HhHH-----------HHHHHHhhccCC-cccCchhHHHHhh-cCCCccEEEe
Confidence 1 11 1368999999998 555211 1111 258888999887 6542 2334433 4688999999
Q ss_pred cCCC
Q 011317 411 TGSV 414 (488)
Q Consensus 411 ~~~~ 414 (488)
.+|+
T Consensus 423 ~~Np 426 (754)
T PRK15370 423 EYNP 426 (754)
T ss_pred eCCC
Confidence 9887
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.33 E-value=3.1e-07 Score=80.76 Aligned_cols=142 Identities=24% Similarity=0.225 Sum_probs=89.8
Q ss_pred CCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhc
Q 011317 261 LPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATC 340 (488)
Q Consensus 261 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 340 (488)
...|+++++++|.|+...-. +- -.|.++.|+++++.-..-..+..+ ++|+.|++++ +.++. +..+-..
T Consensus 283 Wq~LtelDLS~N~I~~iDES-vK--L~Pkir~L~lS~N~i~~v~nLa~L------~~L~~LDLS~-N~Ls~--~~Gwh~K 350 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDES-VK--LAPKLRRLILSQNRIRTVQNLAEL------PQLQLLDLSG-NLLAE--CVGWHLK 350 (490)
T ss_pred Hhhhhhccccccchhhhhhh-hh--hccceeEEeccccceeeehhhhhc------ccceEeeccc-chhHh--hhhhHhh
Confidence 45688889998876643221 11 267899999988543334445555 8899999998 45542 1112225
Q ss_pred CCCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCCH-HHHHHhhccCCCCccEEEecCCCC---
Q 011317 341 RVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTGSVN--- 415 (488)
Q Consensus 341 ~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~~~~--- 415 (488)
+.+++.|.+++| .+.+. |+. .+-+|..|++++|+ |.. ..+..+.+ +|.|+++.+.+||.
T Consensus 351 LGNIKtL~La~N-~iE~LSGL~------------KLYSLvnLDl~~N~-Ie~ldeV~~IG~--LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 351 LGNIKTLKLAQN-KIETLSGLR------------KLYSLVNLDLSSNQ-IEELDEVNHIGN--LPCLETLRLTGNPLAGS 414 (490)
T ss_pred hcCEeeeehhhh-hHhhhhhhH------------hhhhheeccccccc-hhhHHHhccccc--ccHHHHHhhcCCCcccc
Confidence 778999999888 43322 233 34458899999988 443 44555554 89999999999973
Q ss_pred ----HHHHHHHHhhCCCce
Q 011317 416 ----RDILDALARSRPFLN 430 (488)
Q Consensus 416 ----~~~~~~~~~~~~~l~ 430 (488)
.+.+..+..+..-+.
T Consensus 415 vdYRTKVLa~FGERaSE~~ 433 (490)
T KOG1259|consen 415 VDYRTKVLARFGERASEIS 433 (490)
T ss_pred chHHHHHHHHHhhhhhhee
Confidence 334444554444333
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.18 E-value=1.2e-06 Score=73.47 Aligned_cols=128 Identities=18% Similarity=0.218 Sum_probs=38.6
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCc
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 239 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 239 (488)
.++++|+|+++ .++. +..+...+.+|+.|+++++....-.+ ...+++|+.|++++ +.+...+......+|+|
T Consensus 19 ~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 19 VKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSN-NRISSISEGLDKNLPNL 90 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--S-S---S-CHHHHHH-TT-
T ss_pred ccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCC-CCCCccccchHHhCCcC
Confidence 34555555552 3332 12222234556666666543211111 12345666666666 34433211111246777
Q ss_pred CEEeccCCCCCCh-HHHHhhcCCCCccEEEeCCCccchhH-HH-HHHhhcCCCccEEecCC
Q 011317 240 KVLDLRDCKNLGD-EALRAISSLPQLKILLLDGSDISDVG-VS-YLRLTVITSLVKLSLRG 297 (488)
Q Consensus 240 ~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~-~~-~l~~~~~~~L~~L~l~~ 297 (488)
++|.++++ .+.+ ..+..+..+|+|+.|++.+|.+.+.. .. .+.. .+|+|+.|+-..
T Consensus 91 ~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~-~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIY-KLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHH-H-TT-SEETTEE
T ss_pred CEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHH-HcChhheeCCEE
Confidence 77777764 3332 23455667788888888887665432 12 2222 478888887654
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=2e-06 Score=71.54 Aligned_cols=90 Identities=29% Similarity=0.449 Sum_probs=73.2
Q ss_pred CccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCC
Q 011317 263 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 342 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 342 (488)
.++.++-+++.|...++..+.. ++.++.|.+.+|..+.+.++..+.. ..++|+.|++++|+.||+.++..+.+ ++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~--l~~i~~l~l~~ck~~dD~~L~~l~~--~~~~L~~L~lsgC~rIT~~GL~~L~~-lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD--LRSIKSLSLANCKYFDDWCLERLGG--LAPSLQDLDLSGCPRITDGGLACLLK-LK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc--cchhhhheeccccchhhHHHHHhcc--cccchheeeccCCCeechhHHHHHHH-hh
Confidence 4577777788888888888877 8899999999999898888888866 33889999999999999988888875 88
Q ss_pred CCCeEeecCCCCCCH
Q 011317 343 PISELRVRQCPLIGD 357 (488)
Q Consensus 343 ~L~~L~l~~~~~l~~ 357 (488)
+|+.|.+.+-+.+..
T Consensus 177 nLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 177 NLRRLHLYDLPYVAN 191 (221)
T ss_pred hhHHHHhcCchhhhc
Confidence 888888877654443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.12 E-value=1.7e-06 Score=91.02 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=54.5
Q ss_pred CCCCcEEEeecCc--cChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 67 LPGIQKLCLSVDY--ITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 67 l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
+++|++|-+..+. +.. ....+...+|.|++|+|++|... .. -...++.+-+||+|+++.+
T Consensus 544 ~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l--------~~-LP~~I~~Li~LryL~L~~t-------- 605 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSL--------SK-LPSSIGELVHLRYLDLSDT-------- 605 (889)
T ss_pred CCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCcc--------Cc-CChHHhhhhhhhcccccCC--------
Confidence 4567777766543 222 12222346777777777776321 11 1223556667777777532
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 196 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 196 (488)
.+. .++.-..+++.|.+|++........ +..+...+++|++|.+...
T Consensus 606 -~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 606 -GIS--HLPSGLGNLKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRS 652 (889)
T ss_pred -Ccc--ccchHHHHHHhhheecccccccccc--ccchhhhcccccEEEeecc
Confidence 222 1222234456677777765332221 1333444677777777654
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=1.9e-06 Score=75.88 Aligned_cols=128 Identities=17% Similarity=0.149 Sum_probs=86.9
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 315 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 315 (488)
.+.|+.++++++ .++. .-....-.|.++.|+++.|++...+- +.. +++|+.|+++++.--..+++..- +
T Consensus 283 Wq~LtelDLS~N-~I~~-iDESvKL~Pkir~L~lS~N~i~~v~n--La~--L~~L~~LDLS~N~Ls~~~Gwh~K-----L 351 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQ-IDESVKLAPKLRRLILSQNRIRTVQN--LAE--LPQLQLLDLSGNLLAECVGWHLK-----L 351 (490)
T ss_pred Hhhhhhcccccc-chhh-hhhhhhhccceeEEeccccceeeehh--hhh--cccceEeecccchhHhhhhhHhh-----h
Confidence 567888999884 3332 22233457899999999998775443 333 88999999998542223444332 2
Q ss_pred CCeeEEecCCCCCCC-HHHHHHHHhcCCCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCC
Q 011317 316 LQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 390 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 390 (488)
.++++|.+++ +.+. -.|+. .+-+|..|++++| ++... .+..+. ++|.|+.+.+.+|+ +.
T Consensus 352 GNIKtL~La~-N~iE~LSGL~----KLYSLvnLDl~~N-~Ie~ldeV~~IG---------~LPCLE~l~L~~NP-l~ 412 (490)
T KOG1259|consen 352 GNIKTLKLAQ-NKIETLSGLR----KLYSLVNLDLSSN-QIEELDEVNHIG---------NLPCLETLRLTGNP-LA 412 (490)
T ss_pred cCEeeeehhh-hhHhhhhhhH----hhhhheecccccc-chhhHHHhcccc---------cccHHHHHhhcCCC-cc
Confidence 7899999998 4443 23444 3567999999998 55432 333444 78999999999998 54
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.85 E-value=8.6e-06 Score=85.76 Aligned_cols=232 Identities=16% Similarity=0.152 Sum_probs=120.7
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
.+++|++|-+......-......++..+|.|+.|++++|...... +.....+-+|++|+++++ .+...+. .+..+.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L--P~~I~~Li~LryL~L~~t-~I~~LP~-~l~~Lk 618 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL--PSSIGELVHLRYLDLSDT-GISHLPS-GLGNLK 618 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC--ChHHhhhhhhhcccccCC-Cccccch-HHHHHH
Confidence 467788887776322111113334567889999999876654332 233445568888888884 5553332 455777
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCc--cchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD--ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 315 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 315 (488)
.|.+|++..+...... ......+++|++|.+.... .+...+..+. .+.+|+.+.+..+.. ..+..+. ..
T Consensus 619 ~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~--~Le~L~~ls~~~~s~---~~~e~l~---~~ 689 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELE--NLEHLENLSITISSV---LLLEDLL---GM 689 (889)
T ss_pred hhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhh--cccchhhheeecchh---HhHhhhh---hh
Confidence 8888888765433222 2233358888888887653 2222223332 255566555544321 1111110 00
Q ss_pred CCee----EEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCC-CCCccEEeccCCCCCC
Q 011317 316 LQLQ----ELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY-GSSIRLLDLYNCGGIT 390 (488)
Q Consensus 316 ~~L~----~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~-~~~L~~L~l~~~~~i~ 390 (488)
++|. .+.+.+|...+ .... ...+.+|+.|.|.+| .+.+..+........ .. ++++..+.+.+|....
T Consensus 690 ~~L~~~~~~l~~~~~~~~~--~~~~-~~~l~~L~~L~i~~~-~~~e~~~~~~~~~~~----~~~f~~l~~~~~~~~~~~r 761 (889)
T KOG4658|consen 690 TRLRSLLQSLSIEGCSKRT--LISS-LGSLGNLEELSILDC-GISEIVIEWEESLIV----LLCFPNLSKVSILNCHMLR 761 (889)
T ss_pred HHHHHHhHhhhhcccccce--eecc-cccccCcceEEEEcC-CCchhhcccccccch----hhhHHHHHHHHhhcccccc
Confidence 2222 33332221111 1111 124678888888888 443322211110000 01 4566677777776544
Q ss_pred HHHHHHhhccCCCCccEEEecCCC
Q 011317 391 QLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 391 ~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+..... ..|+|+.|.+.+|.
T Consensus 762 ~l~~~~----f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 762 DLTWLL----FAPHLTSLSLVSCR 781 (889)
T ss_pred ccchhh----ccCcccEEEEeccc
Confidence 433322 36788888888886
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.53 E-value=3.1e-05 Score=52.86 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=29.7
Q ss_pred CCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 237 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
|+|++|+++++ .+.......+..+++|++|++++|.+.......+.. +++|+.|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~--l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN--LPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTT--STTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC--CCCCCEEeCcCC
Confidence 34555555553 444444445555566666666655544333322222 555555555553
No 46
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.49 E-value=1.1e-06 Score=70.84 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCC
Q 011317 161 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 196 (488)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 196 (488)
+++.|.+++ ++++.. .+.+ ..+.+|+.|++.++
T Consensus 34 ~ITrLtLSH-NKl~~v-ppni-a~l~nlevln~~nn 66 (264)
T KOG0617|consen 34 NITRLTLSH-NKLTVV-PPNI-AELKNLEVLNLSNN 66 (264)
T ss_pred hhhhhhccc-Cceeec-CCcH-HHhhhhhhhhcccc
Confidence 344455555 344332 1221 23455666665543
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.46 E-value=3.1e-05 Score=52.88 Aligned_cols=61 Identities=28% Similarity=0.324 Sum_probs=46.9
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCcc
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 274 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 274 (488)
|+|++|+++++ .+...+...+..+++|++|+++++ .+.......+..+++|++|++++|.+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57788888875 555444445668899999999974 67777777788999999999998864
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.45 E-value=1.7e-05 Score=78.41 Aligned_cols=104 Identities=24% Similarity=0.266 Sum_probs=47.4
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHh-cCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 159 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISA-TSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
++.|+.|+|+. +++.+.. .+..|++|++|+|+.+.- .. +..+.. .| +|+.|.+.+ +.+. .+..+.++.
T Consensus 186 l~ale~LnLsh-Nk~~~v~---~Lr~l~~LkhLDlsyN~L-~~--vp~l~~~gc-~L~~L~lrn-N~l~--tL~gie~Lk 254 (1096)
T KOG1859|consen 186 LPALESLNLSH-NKFTKVD---NLRRLPKLKHLDLSYNCL-RH--VPQLSMVGC-KLQLLNLRN-NALT--TLRGIENLK 254 (1096)
T ss_pred HHHhhhhccch-hhhhhhH---HHHhcccccccccccchh-cc--ccccchhhh-hheeeeecc-cHHH--hhhhHHhhh
Confidence 45566666666 3544332 234566666666665431 10 001111 22 355666655 2221 233344556
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCc
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD 273 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 273 (488)
+|+.|+++++--.....+..+..+..|+.|.|.||.
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 666666655311112223333344455555665553
No 49
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.40 E-value=0.00013 Score=71.76 Aligned_cols=314 Identities=22% Similarity=0.262 Sum_probs=157.9
Q ss_pred CcEEEeecCccChhHHHHHHh---cCCCccEEeccCCCCCCCccccccChHHHHhhh----cC-CCccEEEccccccccc
Q 011317 70 IQKLCLSVDYITDAMVGTISQ---GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN----QH-GKLKHLSLIRSQEFLI 141 (488)
Q Consensus 70 L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~----~~-~~L~~L~l~~~~~~~~ 141 (488)
+..|.|..+.+.+.....+.+ ..+.|..|++++|. +.+.+...+. .. ..|+.|.+..|
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~---------l~~~g~~~l~~~l~~~~~~l~~L~l~~c----- 154 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN---------LGDEGARLLCEGLRLPQCLLQTLELVSC----- 154 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC---------CccHhHHHHHhhcccchHHHHHHHhhcc-----
Confidence 777777777777766666655 56788888888874 6666666554 11 34555665422
Q ss_pred ccccccChHHH---HHHHHhCCCCCEEEEcCCCCCCHHHHHHHH---H----hCCCCceEEecCCCCCCHHHHHH---HH
Q 011317 142 TYFRRVNDLGI---LLMADKCASMESICLGGFCRVTDTGFKTIL---H----SCSNLYKLRVSHGTQLTDLVFHD---IS 208 (488)
Q Consensus 142 ~~~~~~~~~~l---~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~---~----~~~~L~~L~l~~~~~~~~~~~~~---~~ 208 (488)
.+++.+. .........++.++++.+ .+...+...+. . ...++++|++++|.. +...... ..
T Consensus 155 ----~l~~~g~~~l~~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~-t~~~c~~l~~~l 228 (478)
T KOG4308|consen 155 ----SLTSEGAAPLAAVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRCGV-TSSSCALLDEVL 228 (478)
T ss_pred ----cccccchHHHHHHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhcCc-ChHHHHHHHHHH
Confidence 2222222 222223666777777764 33222222221 2 244677788777653 3322222 22
Q ss_pred hcCCC-CCEEEecCCCCCCHHHHHHhh----CC-CCcCEEeccCCCCCChHHHHhh----cCCCCccEEEeCCCccchhH
Q 011317 209 ATSLS-LTHVCLRWCNLLTNHAIKSLA----SN-TGIKVLDLRDCKNLGDEALRAI----SSLPQLKILLLDGSDISDVG 278 (488)
Q Consensus 209 ~~~~~-L~~L~l~~~~~~~~~~~~~l~----~~-~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~~~~i~~~~ 278 (488)
...+. +.++++.. +.+.+.++..+. .+ +.+++++++.+ .+++.+...+ ..++.++++.++.+.+.+.+
T Consensus 229 ~~~~~~~~el~l~~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 229 ASGESLLRELDLAS-NKLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred hccchhhHHHHHHh-cCcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 23333 55566666 466666555443 23 56677777775 4544444333 35667788888877776655
Q ss_pred HHHHHh--hcCCCccEEecCCCCCCCHHHHHHHhccCCCCC-eeEEecCCCCCCCHHHHHHHHh----cCCCCCeEeecC
Q 011317 279 VSYLRL--TVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ-LQELDLSNLPHLSDNGILTLAT----CRVPISELRVRQ 351 (488)
Q Consensus 279 ~~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~ 351 (488)
...+.. .....+..+.+.++...+......+...-.... +....+++ ....+++...+.. .-+.+..+.+..
T Consensus 307 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 385 (478)
T KOG4308|consen 307 VELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISG-NRVGEEGLALLVLAKSNPKSELLRLSLNS 385 (478)
T ss_pred HHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhh-ccchHHHHHHHhhhhcccCcccchhhhhc
Confidence 543332 123445555555444333221111110000011 22222333 3344433332211 122355566655
Q ss_pred CCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc---cCCCCccEEEecCCC
Q 011317 352 CPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV 414 (488)
Q Consensus 352 ~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~ 414 (488)
+ .+.+.+...++.... .++.++.++++.+. ..+.+...+.. ... .++.+.++.++
T Consensus 386 ~-~~~~~~~~~l~~~~~-----~~~~l~~~~l~~n~-~~~~~~~~l~~~~~~~~-~~~~~~l~~~~ 443 (478)
T KOG4308|consen 386 Q-VIEGRGALRLAAQLA-----SNEKLEILDLSLNS-LHDEGAEVLTEQLSRNG-SLKALRLSRNP 443 (478)
T ss_pred c-ccccHHHHHhhhhhh-----hcchhhhhhhhcCc-cchhhHHHHHHhhhhcc-cchhhhhccCh
Confidence 5 344444444433222 67778888888776 33332222211 134 77777777665
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.17 E-value=2.7e-05 Score=76.95 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=14.7
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHH
Q 011317 159 CASMESICLGGFCRVTDTGFKTI 181 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~ 181 (488)
+.+|+.|.+.+|+--+..++..+
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHH
Confidence 67888888888743334444443
No 51
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.03 E-value=1.5e-05 Score=64.54 Aligned_cols=149 Identities=23% Similarity=0.235 Sum_probs=74.4
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCc
Q 011317 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 264 (488)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 264 (488)
+.+++.|.++.+.. +..+ .. ...+.+|+.|++.+ +.+.+.+. .++.+++|+.|.+.-+ .+ ......++.+|.|
T Consensus 32 ~s~ITrLtLSHNKl-~~vp-pn-ia~l~nlevln~~n-nqie~lp~-~issl~klr~lnvgmn-rl-~~lprgfgs~p~l 104 (264)
T KOG0617|consen 32 MSNITRLTLSHNKL-TVVP-PN-IAELKNLEVLNLSN-NQIEELPT-SISSLPKLRILNVGMN-RL-NILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhhcccCce-eecC-Cc-HHHhhhhhhhhccc-chhhhcCh-hhhhchhhhheecchh-hh-hcCccccCCCchh
Confidence 34555666665432 1110 01 12334777777776 44444332 4557778888877642 22 1233456677788
Q ss_pred cEEEeCCCccchhHHHH-HHhhcCCCccEEecCCCCC-CCHHHHHHHhccCCCCCeeEEecCCCCCCC-HHHHHHHHhcC
Q 011317 265 KILLLDGSDISDVGVSY-LRLTVITSLVKLSLRGCKR-LTDKCISALFDGTSKLQLQELDLSNLPHLS-DNGILTLATCR 341 (488)
Q Consensus 265 ~~L~l~~~~i~~~~~~~-l~~~~~~~L~~L~l~~~~~-l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~ 341 (488)
+.|+++++++.+..+.. +.. +..|+.|+++.+.. +-+..+..+ ++|+.|.+....-++ +..+. .+
T Consensus 105 evldltynnl~e~~lpgnff~--m~tlralyl~dndfe~lp~dvg~l------t~lqil~lrdndll~lpkeig----~l 172 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFY--MTTLRALYLGDNDFEILPPDVGKL------TNLQILSLRDNDLLSLPKEIG----DL 172 (264)
T ss_pred hhhhccccccccccCCcchhH--HHHHHHHHhcCCCcccCChhhhhh------cceeEEeeccCchhhCcHHHH----HH
Confidence 88888777666554421 111 34555566655321 112333333 556666665522222 22222 24
Q ss_pred CCCCeEeecCC
Q 011317 342 VPISELRVRQC 352 (488)
Q Consensus 342 ~~L~~L~l~~~ 352 (488)
+.|++|+|.++
T Consensus 173 t~lrelhiqgn 183 (264)
T KOG0617|consen 173 TRLRELHIQGN 183 (264)
T ss_pred HHHHHHhcccc
Confidence 45666666555
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.94 E-value=0.0017 Score=61.79 Aligned_cols=71 Identities=10% Similarity=0.191 Sum_probs=40.5
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCC
Q 011317 159 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 238 (488)
|++++.|++++| .+... + ...++|++|.+++|..++..+- . ..++|++|.+++|..+.. -.++
T Consensus 51 ~~~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLtsLP~-~---LP~nLe~L~Ls~Cs~L~s-------LP~s 113 (426)
T PRK15386 51 ARASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTTLPG-S---IPEGLEKLTVCHCPEISG-------LPES 113 (426)
T ss_pred hcCCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCcccCCc-h---hhhhhhheEccCcccccc-------cccc
Confidence 678888888886 44332 1 1223688888877765432221 0 124677777777654431 1345
Q ss_pred cCEEeccC
Q 011317 239 IKVLDLRD 246 (488)
Q Consensus 239 L~~L~l~~ 246 (488)
|+.|++.+
T Consensus 114 Le~L~L~~ 121 (426)
T PRK15386 114 VRSLEIKG 121 (426)
T ss_pred cceEEeCC
Confidence 66666653
No 53
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.92 E-value=0.00016 Score=71.12 Aligned_cols=218 Identities=22% Similarity=0.230 Sum_probs=114.5
Q ss_pred CCEEEEcCCCCCCHHHHHHHHH---hCCCCceEEecCCCCCCHHHHHHHHhcC----CCCCEEEecCCCCCCHHHHHH--
Q 011317 162 MESICLGGFCRVTDTGFKTILH---SCSNLYKLRVSHGTQLTDLVFHDISATS----LSLTHVCLRWCNLLTNHAIKS-- 232 (488)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~-- 232 (488)
+..|.+.+| .+.+.+...+.+ ..+.|..|+++++. +.+.+...+.... ..|+.|.+..| .+...+...
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHH
Confidence 667777775 555444444444 34678888888765 4466655554432 34566666665 233333222
Q ss_pred --hhCCCCcCEEeccCCCCCChHHHHh----hc----CCCCccEEEeCCCccchhHHHHHHh--hcCCC-ccEEecCCCC
Q 011317 233 --LASNTGIKVLDLRDCKNLGDEALRA----IS----SLPQLKILLLDGSDISDVGVSYLRL--TVITS-LVKLSLRGCK 299 (488)
Q Consensus 233 --l~~~~~L~~L~l~~~~~~~~~~~~~----l~----~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~-L~~L~l~~~~ 299 (488)
+...+.++.++++.+... ..+... +. ...++++|++.+|.++......+.. ...+. +..|++.. +
T Consensus 166 ~~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-n 243 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-N 243 (478)
T ss_pred HHHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-c
Confidence 335667777777764322 222211 11 2456777777777666555543322 12233 45566655 3
Q ss_pred CCCHHHHHHHhccCCC--CCeeEEecCCCCCCCHHHHHH---HHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCC
Q 011317 300 RLTDKCISALFDGTSK--LQLQELDLSNLPHLSDNGILT---LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY 374 (488)
Q Consensus 300 ~l~~~~~~~l~~~~~~--~~L~~L~l~~~~~l~~~~~~~---l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~ 374 (488)
.+.+.++..+...... +.++.+++..| .+++.+... ....|+.++.+.+..+ .+++.+...+..... .
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~-----~ 316 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALE-----R 316 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhh-----h
Confidence 4666655554432211 35567777764 455433332 2334566777777666 666666555544333 3
Q ss_pred CCCccEEeccCCCCCCH
Q 011317 375 GSSIRLLDLYNCGGITQ 391 (488)
Q Consensus 375 ~~~L~~L~l~~~~~i~~ 391 (488)
...+..+-+.++...+.
T Consensus 317 ~~~~~~~~l~~~~~~~~ 333 (478)
T KOG4308|consen 317 KTPLLHLVLGGTGKGTR 333 (478)
T ss_pred cccchhhhccccCccch
Confidence 44455555555554444
No 54
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00037 Score=60.84 Aligned_cols=62 Identities=26% Similarity=0.360 Sum_probs=34.5
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCH-HHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD-TSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
|+|++|.++........++..++..+|+|++|++++| ++.+ ..+..+. .+++|..|++.+|.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~---------~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK---------ELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh---------hhcchhhhhcccCC
Confidence 6777777765322223445555556677777777776 4443 1222222 45566666666665
No 55
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.75 E-value=0.002 Score=34.99 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=10.1
Q ss_pred CCCCeEeecCCCCCCHHHHHHH
Q 011317 342 VPISELRVRQCPLIGDTSVIAL 363 (488)
Q Consensus 342 ~~L~~L~l~~~~~l~~~~~~~l 363 (488)
++|+.|+|++|..++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444444444444444444443
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.55 E-value=0.00016 Score=63.08 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=32.0
Q ss_pred CCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCH-HHHHHhhccCCCCccEEEecCCC
Q 011317 341 RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 341 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+|+|+.|.++.|..-...++..++. .+|+|++|++++|+ |.+ ..+..+.. +++|+.|++.+|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e--------~~P~l~~l~ls~Nk-i~~lstl~pl~~--l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAE--------KAPNLKVLNLSGNK-IKDLSTLRPLKE--LENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhh--------hCCceeEEeecCCc-cccccccchhhh--hcchhhhhcccCC
Confidence 4566666665552222233444444 55666666666665 443 22333332 5556666666664
No 57
>PLN03150 hypothetical protein; Provisional
Probab=96.47 E-value=0.0067 Score=62.63 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=60.6
Q ss_pred ccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhc
Q 011317 264 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATC 340 (488)
Q Consensus 264 L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 340 (488)
++.|+|+++.+.......+.. +++|+.|+++++. +. +..+..+ ++|+.|+|++ +.++......+. .
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~-l~g~iP~~~~~l------~~L~~LdLs~-N~lsg~iP~~l~-~ 488 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNS-IRGNIPPSLGSI------TSLEVLDLSY-NSFNGSIPESLG-Q 488 (623)
T ss_pred EEEEECCCCCccccCCHHHhC--CCCCCEEECCCCc-ccCcCChHHhCC------CCCCEEECCC-CCCCCCCchHHh-c
Confidence 667777777665443344444 7778888887754 32 2222222 7788888877 355533223333 5
Q ss_pred CCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCC
Q 011317 341 RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGI 389 (488)
Q Consensus 341 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i 389 (488)
+++|+.|++++| .++......+.. ...++..+++.+|..+
T Consensus 489 L~~L~~L~Ls~N-~l~g~iP~~l~~--------~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 489 LTSLRILNLNGN-SLSGRVPAALGG--------RLLHRASFNFTDNAGL 528 (623)
T ss_pred CCCCCEEECcCC-cccccCChHHhh--------ccccCceEEecCCccc
Confidence 778888888877 444333333332 2335666777766543
No 58
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.47 E-value=0.0036 Score=34.00 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.1
Q ss_pred CCCccEEeccCCCCCCHHHHHHhhc
Q 011317 375 GSSIRLLDLYNCGGITQLAFRWLKK 399 (488)
Q Consensus 375 ~~~L~~L~l~~~~~i~~~~~~~l~~ 399 (488)
|++|+.|+|++|..|++.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5789999999999999999988753
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.00096 Score=58.71 Aligned_cols=113 Identities=20% Similarity=0.208 Sum_probs=69.3
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+.+.+.|++-++.++|.. ++..+|.|++|.|+-|. |+ .+..+..|.+|++|.|.. +.
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNk---------Is--sL~pl~rCtrLkElYLRk---------N~ 74 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNK---------IS--SLAPLQRCTRLKELYLRK---------NC 74 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccc---------cc--cchhHHHHHHHHHHHHHh---------cc
Confidence 456677777777777743 34578888888888774 33 344567788888888863 23
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHH---HHHHHHHhCCCCceEEecCCCCCCHHHHH
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDT---GFKTILHSCSNLYKLRVSHGTQLTDLVFH 205 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 205 (488)
+.+..-.....++|+|+.|.|...+..... .-..++..+|+|++|+ +..++.....
T Consensus 75 I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle 133 (388)
T KOG2123|consen 75 IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELE 133 (388)
T ss_pred cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHH
Confidence 333322233456888888888754333222 1234556688888886 2334444444
No 60
>PLN03150 hypothetical protein; Provisional
Probab=96.24 E-value=0.0083 Score=61.93 Aligned_cols=106 Identities=13% Similarity=0.080 Sum_probs=50.7
Q ss_pred ccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCC
Q 011317 95 LTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVT 174 (488)
Q Consensus 95 L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 174 (488)
++.|+|+++. ++......++.+++|+.|+|+++. +... +......+++|+.|+|+++ .+.
T Consensus 420 v~~L~L~~n~---------L~g~ip~~i~~L~~L~~L~Ls~N~---------l~g~-iP~~~~~l~~L~~LdLs~N-~ls 479 (623)
T PLN03150 420 IDGLGLDNQG---------LRGFIPNDISKLRHLQSINLSGNS---------IRGN-IPPSLGSITSLEVLDLSYN-SFN 479 (623)
T ss_pred EEEEECCCCC---------ccccCCHHHhCCCCCCEEECCCCc---------ccCc-CChHHhCCCCCCEEECCCC-CCC
Confidence 5566666652 333233345566666666665321 1110 1112244667777777763 444
Q ss_pred HHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 011317 175 DTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWC 222 (488)
Q Consensus 175 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 222 (488)
.. ++..+..+++|+.|+++++......+ ..+.....++..+++.++
T Consensus 480 g~-iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 480 GS-IPESLGQLTSLRILNLNGNSLSGRVP-AALGGRLLHRASFNFTDN 525 (623)
T ss_pred CC-CchHHhcCCCCCEEECcCCcccccCC-hHHhhccccCceEEecCC
Confidence 33 22223456777777777654221111 112222335556666653
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.18 E-value=0.014 Score=55.66 Aligned_cols=139 Identities=16% Similarity=0.198 Sum_probs=83.2
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC-ccchhHHHHHHhhcC
Q 011317 209 ATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVI 287 (488)
Q Consensus 209 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~ 287 (488)
..+++++.|++++| .+...+ .-.++|+.|.+++|..+.... ..+ .++|++|.+++| .+.. -.
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP----~LP~sLtsL~Lsnc~nLtsLP-~~L--P~nLe~L~Ls~Cs~L~s---------LP 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP----VLPNELTEITIENCNNLTTLP-GSI--PEGLEKLTVCHCPEISG---------LP 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC----CCCCCCcEEEccCCCCcccCC-chh--hhhhhheEccCcccccc---------cc
Confidence 34689999999998 554333 124579999999987753322 112 358999999988 4431 13
Q ss_pred CCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHccc
Q 011317 288 TSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASML 367 (488)
Q Consensus 288 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 367 (488)
++|+.|.+... ... .+..+. ++|+.|.+.+.+......+.. .-.++|+.|.+++|..+. +...
T Consensus 112 ~sLe~L~L~~n-~~~--~L~~LP-----ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~------LP~~- 174 (426)
T PRK15386 112 ESVRSLEIKGS-ATD--SIKNVP-----NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII------LPEK- 174 (426)
T ss_pred cccceEEeCCC-CCc--ccccCc-----chHhheecccccccccccccc--ccCCcccEEEecCCCccc------Cccc-
Confidence 57888888642 222 122332 678888886532221111111 013689999999995432 1110
Q ss_pred ccCCCCCCCCccEEeccCCC
Q 011317 368 VDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~~~ 387 (488)
-..+|+.|.++.+.
T Consensus 175 ------LP~SLk~L~ls~n~ 188 (426)
T PRK15386 175 ------LPESLQSITLHIEQ 188 (426)
T ss_pred ------ccccCcEEEecccc
Confidence 12479999998753
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.98 E-value=0.015 Score=36.30 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=18.7
Q ss_pred CCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 237 TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
++|++|+++++ .+.+... .++++++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSS-S-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCC-CCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 35566666653 4443221 2556666666666666554
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.69 E-value=0.0089 Score=37.29 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=6.3
Q ss_pred CCCCccEEeccCCC
Q 011317 374 YGSSIRLLDLYNCG 387 (488)
Q Consensus 374 ~~~~L~~L~l~~~~ 387 (488)
.+++|+.|++++|+
T Consensus 22 ~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 22 NLPNLETLNLSNNP 35 (44)
T ss_dssp TCTTSSEEEETSSC
T ss_pred CCCCCCEEEecCCC
Confidence 34444444444443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.0027 Score=55.96 Aligned_cols=113 Identities=20% Similarity=0.230 Sum_probs=71.8
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH-HHHHHHhccCC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KCISALFDGTS 314 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~ 314 (488)
+.+.++|+..|| .+.+..+ ...+|.|+.|.|+-|.|+. +..+.. |+.|++|++..+ .+.+ +.+..+ ..
T Consensus 18 l~~vkKLNcwg~-~L~DIsi--c~kMp~lEVLsLSvNkIss--L~pl~r--CtrLkElYLRkN-~I~sldEL~YL---kn 86 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI--CEKMPLLEVLSLSVNKISS--LAPLQR--CTRLKELYLRKN-CIESLDELEYL---KN 86 (388)
T ss_pred HHHhhhhcccCC-CccHHHH--HHhcccceeEEeecccccc--chhHHH--HHHHHHHHHHhc-ccccHHHHHHH---hc
Confidence 456778888887 5555433 3478899999999887764 444444 888999998874 3543 333333 23
Q ss_pred CCCeeEEecCCCCCCCHH---HHHHHHhcCCCCCeEeecCCCCCCHHHHHH
Q 011317 315 KLQLQELDLSNLPHLSDN---GILTLATCRVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~~---~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
+|+|+.|.|...+..... --..+.+.+|+|+.|+ |..++...+..
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~ 134 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEE 134 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHH
Confidence 388899888875443322 2233455688888885 33566555544
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.52 E-value=0.014 Score=56.99 Aligned_cols=170 Identities=26% Similarity=0.285 Sum_probs=78.7
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcC-CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCC
Q 011317 185 CSNLYKLRVSHGTQLTDLVFHDISATS-LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQ 263 (488)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 263 (488)
.+.++.|.+.++.. ++ +....... ++|+.|++++ +.+.... ..+..+++|+.|+++++ .+.+... ..+..++
T Consensus 115 ~~~l~~L~l~~n~i-~~--i~~~~~~~~~nL~~L~l~~-N~i~~l~-~~~~~l~~L~~L~l~~N-~l~~l~~-~~~~~~~ 187 (394)
T COG4886 115 LTNLTSLDLDNNNI-TD--IPPLIGLLKSNLKELDLSD-NKIESLP-SPLRNLPNLKNLDLSFN-DLSDLPK-LLSNLSN 187 (394)
T ss_pred ccceeEEecCCccc-cc--Cccccccchhhcccccccc-cchhhhh-hhhhccccccccccCCc-hhhhhhh-hhhhhhh
Confidence 35677777665432 11 11112223 2677777766 3443321 23446677777777664 3322221 1114566
Q ss_pred ccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhccCCCCCeeEEecCCCCCCCH--HHHHHHHhc
Q 011317 264 LKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLSD--NGILTLATC 340 (488)
Q Consensus 264 L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~~--~~~~~l~~~ 340 (488)
|+.|.++++.+.+..... . ....|++|.+.+...+. ...+..+ .++..+.+.+ +.+.. ..+. .
T Consensus 188 L~~L~ls~N~i~~l~~~~-~--~~~~L~~l~~~~N~~~~~~~~~~~~------~~l~~l~l~~-n~~~~~~~~~~----~ 253 (394)
T COG4886 188 LNNLDLSGNKISDLPPEI-E--LLSALEELDLSNNSIIELLSSLSNL------KNLSGLELSN-NKLEDLPESIG----N 253 (394)
T ss_pred hhheeccCCccccCchhh-h--hhhhhhhhhhcCCcceecchhhhhc------ccccccccCC-ceeeeccchhc----c
Confidence 666777766555433221 1 13346666666542121 1222222 4444444443 23222 2222 4
Q ss_pred CCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 341 RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 341 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
+++++.|++++| .+++... +. ...+++.|+++++.
T Consensus 254 l~~l~~L~~s~n-~i~~i~~--~~---------~~~~l~~L~~s~n~ 288 (394)
T COG4886 254 LSNLETLDLSNN-QISSISS--LG---------SLTNLRELDLSGNS 288 (394)
T ss_pred ccccceeccccc-ccccccc--cc---------ccCccCEEeccCcc
Confidence 555666666666 4433322 11 44566666666655
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.36 E-value=0.015 Score=56.80 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=6.2
Q ss_pred cCCCCCEEEecC
Q 011317 210 TSLSLTHVCLRW 221 (488)
Q Consensus 210 ~~~~L~~L~l~~ 221 (488)
.+++|+.|+++.
T Consensus 161 ~l~~L~~L~l~~ 172 (394)
T COG4886 161 NLPNLKNLDLSF 172 (394)
T ss_pred ccccccccccCC
Confidence 445555555554
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.22 E-value=0.01 Score=49.89 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=48.7
Q ss_pred CCeeEEecCCCCCCCH--HHHHHHHhcCCCCCeEeecCCCCCCHH-HHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 316 LQLQELDLSNLPHLSD--NGILTLATCRVPISELRVRQCPLIGDT-SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
++|.+|.+++ +.|+. ..+.. .+|+|+.|.+.+| .+... .+..++ .||+|++|.+-+|+ ++..
T Consensus 64 ~rL~tLll~n-NrIt~I~p~L~~---~~p~l~~L~LtnN-si~~l~dl~pLa---------~~p~L~~Ltll~Np-v~~k 128 (233)
T KOG1644|consen 64 PRLHTLLLNN-NRITRIDPDLDT---FLPNLKTLILTNN-SIQELGDLDPLA---------SCPKLEYLTLLGNP-VEHK 128 (233)
T ss_pred cccceEEecC-Ccceeeccchhh---hccccceEEecCc-chhhhhhcchhc---------cCCccceeeecCCc-hhcc
Confidence 6777777777 56652 22322 3567777777777 33222 233333 67788888888877 4432
Q ss_pred -HHHHhhccCCCCccEEEecCCC
Q 011317 393 -AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 393 -~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
......-..+|+|+.|++.+..
T Consensus 129 ~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 129 KNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCceeEEEEecCcceEeehhhhh
Confidence 2222111236788888887664
No 68
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.26 E-value=0.032 Score=29.46 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=8.3
Q ss_pred CCCCeEeecCCCCCCHHHHHHH
Q 011317 342 VPISELRVRQCPLIGDTSVIAL 363 (488)
Q Consensus 342 ~~L~~L~l~~~~~l~~~~~~~l 363 (488)
++|+.|+|++| .+++.++..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 34444444444 3444444443
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.74 E-value=0.02 Score=45.13 Aligned_cols=62 Identities=24% Similarity=0.273 Sum_probs=29.8
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
+.....|+..+++++ .+.+........+|.++.|++..|.+.+.... ++. ++.|+.|+++.+
T Consensus 49 l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aa--m~aLr~lNl~~N 110 (177)
T KOG4579|consen 49 LSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAA--MPALRSLNLRFN 110 (177)
T ss_pred HhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHH-Hhh--hHHhhhcccccC
Confidence 334445555555552 33333222223445555566665555544433 333 555666666553
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.71 E-value=0.078 Score=27.95 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=12.1
Q ss_pred CCccEEEeCCCccchhHHHHHH
Q 011317 262 PQLKILLLDGSDISDVGVSYLR 283 (488)
Q Consensus 262 ~~L~~L~l~~~~i~~~~~~~l~ 283 (488)
++|++|+|++|.+++.++..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5566666666666666655543
No 71
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.40 E-value=0.067 Score=45.21 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=54.4
Q ss_pred CCeeEEecCCCCCCC-HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCH-HH
Q 011317 316 LQLQELDLSNLPHLS-DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ-LA 393 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~-~~ 393 (488)
.+...++++.. .+. ...+. .+++|..|.+++| .|+...- .+.. .+|+|..|.+.+|. |.. ..
T Consensus 42 d~~d~iDLtdN-dl~~l~~lp----~l~rL~tLll~nN-rIt~I~p-~L~~--------~~p~l~~L~LtnNs-i~~l~d 105 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKLDNLP----HLPRLHTLLLNNN-RITRIDP-DLDT--------FLPNLKTLILTNNS-IQELGD 105 (233)
T ss_pred cccceeccccc-chhhcccCC----CccccceEEecCC-cceeecc-chhh--------hccccceEEecCcc-hhhhhh
Confidence 45666777763 332 22222 5788999999888 6664321 1222 56889999999987 444 33
Q ss_pred HHHhhccCCCCccEEEecCCC
Q 011317 394 FRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 394 ~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+..+.. ||+|++|.+-+++
T Consensus 106 l~pLa~--~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 106 LDPLAS--CPKLEYLTLLGNP 124 (233)
T ss_pred cchhcc--CCccceeeecCCc
Confidence 555554 9999999999987
No 72
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.04 E-value=0.014 Score=57.35 Aligned_cols=79 Identities=33% Similarity=0.311 Sum_probs=38.8
Q ss_pred cCCCCCEEEecCCCCCCHHHHHH-hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKS-LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVIT 288 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 288 (488)
.+.+|+.|++.+ +.+.. +.. +..+++|++|+++++ .++. +..+..++.|+.|++.+|.+....-. . .++
T Consensus 93 ~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~~l~~L~~L~l~~N~i~~~~~~--~--~l~ 162 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLSTLTLLKELNLSGNLISDISGL--E--SLK 162 (414)
T ss_pred cccceeeeeccc-cchhh--cccchhhhhcchheecccc-cccc--ccchhhccchhhheeccCcchhccCC--c--cch
Confidence 345666666665 23321 222 345666666666663 3322 22333445566666666655432211 1 145
Q ss_pred CccEEecCCC
Q 011317 289 SLVKLSLRGC 298 (488)
Q Consensus 289 ~L~~L~l~~~ 298 (488)
.|+.++++++
T Consensus 163 ~L~~l~l~~n 172 (414)
T KOG0531|consen 163 SLKLLDLSYN 172 (414)
T ss_pred hhhcccCCcc
Confidence 5566666554
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.56 E-value=0.035 Score=54.53 Aligned_cols=125 Identities=30% Similarity=0.264 Sum_probs=79.5
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhccCC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFDGTS 314 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~ 314 (488)
+..++.+.+... .+.. ....+..+.+|+.|++.++.+....-. +. .+++|+.|+++++. ++ -.++..+
T Consensus 71 l~~l~~l~l~~n-~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~--~~~~L~~L~ls~N~-I~~i~~l~~l----- 139 (414)
T KOG0531|consen 71 LTSLKELNLRQN-LIAK-ILNHLSKLKSLEALDLYDNKIEKIENL-LS--SLVNLQVLDLSFNK-ITKLEGLSTL----- 139 (414)
T ss_pred hHhHHhhccchh-hhhh-hhcccccccceeeeeccccchhhcccc-hh--hhhcchheeccccc-cccccchhhc-----
Confidence 444455554442 2221 233366788999999999876543221 22 48899999999854 54 4555555
Q ss_pred CCCeeEEecCCCCCCCH-HHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 315 KLQLQELDLSNLPHLSD-NGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
+.|+.|++.+ +.++. .++. .+++|+.+++++| .+++..-..+ . .+.+++.+.+.++.
T Consensus 140 -~~L~~L~l~~-N~i~~~~~~~----~l~~L~~l~l~~n-~i~~ie~~~~-~--------~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 140 -TLLKELNLSG-NLISDISGLE----SLKSLKLLDLSYN-RIVDIENDEL-S--------ELISLEELDLGGNS 197 (414)
T ss_pred -cchhhheecc-CcchhccCCc----cchhhhcccCCcc-hhhhhhhhhh-h--------hccchHHHhccCCc
Confidence 6699999998 45542 2333 3788999999888 5544333101 2 67789999999887
No 74
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.54 E-value=0.096 Score=41.43 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=49.9
Q ss_pred CccEEecCCCCCC-CHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHccc
Q 011317 289 SLVKLSLRGCKRL-TDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASML 367 (488)
Q Consensus 289 ~L~~L~l~~~~~l-~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 367 (488)
.+..++++.|+-. -.+.+..+..+ ..|+..+|++ +.+.+-. ..+....|.++.|++.++ .+.+...+ ++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~---~el~~i~ls~-N~fk~fp-~kft~kf~t~t~lNl~~n-eisdvPeE-~A--- 97 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKG---YELTKISLSD-NGFKKFP-KKFTIKFPTATTLNLANN-EISDVPEE-LA--- 97 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCC---ceEEEEeccc-chhhhCC-HHHhhccchhhhhhcchh-hhhhchHH-Hh---
Confidence 3556677777533 13444444432 5677778877 4444221 123334667788888777 66666555 55
Q ss_pred ccCCCCCCCCccEEeccCCC
Q 011317 368 VDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~~~ 387 (488)
..|.|+.|+++.|+
T Consensus 98 ------am~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 98 ------AMPALRSLNLRFNP 111 (177)
T ss_pred ------hhHHhhhcccccCc
Confidence 46778888888877
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.65 E-value=0.67 Score=25.47 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=13.9
Q ss_pred CCCCeEeecCCCCCCHHHHHHHHc
Q 011317 342 VPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 342 ~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
++|+.|+|++| .+++.|...++.
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHH
Confidence 35666666666 566666666554
No 76
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=86.15 E-value=0.077 Score=51.99 Aligned_cols=153 Identities=18% Similarity=0.264 Sum_probs=82.6
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHhc
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALFD 311 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~ 311 (488)
++.+..|+.|+++.+ .+.... ..++.+| |+.|-+++|+++..... +. ..++|..|+.+.|.-.+ ...+..+
T Consensus 117 i~~L~~lt~l~ls~N-qlS~lp-~~lC~lp-Lkvli~sNNkl~~lp~~-ig--~~~tl~~ld~s~nei~slpsql~~l-- 188 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSN-QLSHLP-DGLCDLP-LKVLIVSNNKLTSLPEE-IG--LLPTLAHLDVSKNEIQSLPSQLGYL-- 188 (722)
T ss_pred hhhhhHHHHhhhccc-hhhcCC-hhhhcCc-ceeEEEecCccccCCcc-cc--cchhHHHhhhhhhhhhhchHHhhhH--
Confidence 445667777777763 222211 1233333 77788888766532221 11 25677778887765332 2333333
Q ss_pred cCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCH
Q 011317 312 GTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 391 (488)
Q Consensus 312 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~ 391 (488)
.+|+.|.+.. +++.+- ...+. +-.|..|+++.| ++....+.. . .+..|++|-+.+|+ +..
T Consensus 189 ----~slr~l~vrR-n~l~~l-p~El~--~LpLi~lDfScN-kis~iPv~f-r---------~m~~Lq~l~LenNP-LqS 248 (722)
T KOG0532|consen 189 ----TSLRDLNVRR-NHLEDL-PEELC--SLPLIRLDFSCN-KISYLPVDF-R---------KMRHLQVLQLENNP-LQS 248 (722)
T ss_pred ----HHHHHHHHhh-hhhhhC-CHHHh--CCceeeeecccC-ceeecchhh-h---------hhhhheeeeeccCC-CCC
Confidence 5677777766 333211 11122 335888888777 555332221 1 45668888888888 665
Q ss_pred HHHHHhhccCCCCccEEEecCC
Q 011317 392 LAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 392 ~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
....--..+...=.|+|++.-|
T Consensus 249 PPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 249 PPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ChHHHHhccceeeeeeecchhc
Confidence 4433322223445677777766
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.67 E-value=1.3 Score=24.33 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=16.1
Q ss_pred CCccEEEeCCCccchhHHHHHHh
Q 011317 262 PQLKILLLDGSDISDVGVSYLRL 284 (488)
Q Consensus 262 ~~L~~L~l~~~~i~~~~~~~l~~ 284 (488)
++|++|+|++|.+.+.+...+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777777777777777766654
No 78
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.25 E-value=2.1 Score=42.27 Aligned_cols=89 Identities=17% Similarity=0.062 Sum_probs=50.9
Q ss_pred HHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC-
Q 011317 336 TLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV- 414 (488)
Q Consensus 336 ~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~- 414 (488)
....+.|.+..+++++|.-..-.++..+++ ..|+|+.|+|++|..... ...++.+-....|++|-+.||+
T Consensus 212 ~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq--------~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 212 HIEENFPEILSLSLSNNRLYHLDALSSLSQ--------IAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred HhhcCCcceeeeecccchhhchhhhhHHHH--------hcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCcc
Confidence 334456667777777764334445555666 667777777777731111 1112222135677777777776
Q ss_pred ------CHHHHHHHHhhCCCceeec
Q 011317 415 ------NRDILDALARSRPFLNVAC 433 (488)
Q Consensus 415 ------~~~~~~~~~~~~~~l~~~~ 433 (488)
...-+.++...+|++....
T Consensus 283 c~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 283 CTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred ccchhhhHHHHHHHHHhcchheeec
Confidence 2344566777888776553
No 79
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=82.45 E-value=0.25 Score=48.56 Aligned_cols=149 Identities=23% Similarity=0.225 Sum_probs=89.8
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+..|++|+++. +.+...+. .++.|| |+.|.++++ +++.. ...++..+.|..|+.+.|.+... ...+.. +.+
T Consensus 119 ~L~~lt~l~ls~-NqlS~lp~-~lC~lp-Lkvli~sNN-kl~~l-p~~ig~~~tl~~ld~s~nei~sl-psql~~--l~s 190 (722)
T KOG0532|consen 119 NLEALTFLDLSS-NQLSHLPD-GLCDLP-LKVLIVSNN-KLTSL-PEEIGLLPTLAHLDVSKNEIQSL-PSQLGY--LTS 190 (722)
T ss_pred hhhHHHHhhhcc-chhhcCCh-hhhcCc-ceeEEEecC-ccccC-CcccccchhHHHhhhhhhhhhhc-hHHhhh--HHH
Confidence 345677777776 34433322 344444 889998884 44332 23455678889999998866532 223333 677
Q ss_pred ccEEecCCCCCCC-HHHHHHHhccCCCCCeeEEecCCCCCCC--HHHHHHHHhcCCCCCeEeecCCCCCCHH-HHHHHHc
Q 011317 290 LVKLSLRGCKRLT-DKCISALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDT-SVIALAS 365 (488)
Q Consensus 290 L~~L~l~~~~~l~-~~~~~~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~~~~l~~ 365 (488)
|+.|.+..+.-+. ++.+.. -.|.+|+++. +++. +..+. .+..|++|-|.+|+--+.. .+...+
T Consensus 191 lr~l~vrRn~l~~lp~El~~-------LpLi~lDfSc-Nkis~iPv~fr----~m~~Lq~l~LenNPLqSPPAqIC~kG- 257 (722)
T KOG0532|consen 191 LRDLNVRRNHLEDLPEELCS-------LPLIRLDFSC-NKISYLPVDFR----KMRHLQVLQLENNPLQSPPAQICEKG- 257 (722)
T ss_pred HHHHHHhhhhhhhCCHHHhC-------Cceeeeeccc-Cceeecchhhh----hhhhheeeeeccCCCCCChHHHHhcc-
Confidence 8888887743221 222222 3588999986 7776 33333 6789999999998533322 121111
Q ss_pred ccccCCCCCCCCccEEeccCCC
Q 011317 366 MLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
...-.++|++.-|+
T Consensus 258 --------kVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 258 --------KVHIFKYLSTQACQ 271 (722)
T ss_pred --------ceeeeeeecchhcc
Confidence 33457788888884
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=81.43 E-value=0.32 Score=38.67 Aligned_cols=10 Identities=40% Similarity=0.866 Sum_probs=3.3
Q ss_pred CCCCCEEEEc
Q 011317 159 CASMESICLG 168 (488)
Q Consensus 159 ~~~L~~L~l~ 168 (488)
|++|+.+.+.
T Consensus 11 ~~~l~~i~~~ 20 (129)
T PF13306_consen 11 CSNLESITFP 20 (129)
T ss_dssp -TT--EEEET
T ss_pred CCCCCEEEEC
Confidence 4445555444
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=80.03 E-value=1.5 Score=20.83 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.2
Q ss_pred CccEEEeCCCc
Q 011317 263 QLKILLLDGSD 273 (488)
Q Consensus 263 ~L~~L~l~~~~ 273 (488)
+|+.|+|++|.
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 34444444443
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.75 E-value=4.8 Score=39.81 Aligned_cols=64 Identities=25% Similarity=0.330 Sum_probs=34.8
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCC-CCC-HHHHHHHHhcCCCCCeEeecCCC
Q 011317 286 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP-HLS-DNGILTLATCRVPISELRVRQCP 353 (488)
Q Consensus 286 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~-~l~-~~~~~~l~~~~~~L~~L~l~~~~ 353 (488)
..+.+..+.++++.-..-+.+..++... |+|+.|+|++.. .+. ...+..+ ....|++|-+.||+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~a--pklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIA--PKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhc--chhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCc
Confidence 5667777777765433345555555544 777777777631 222 2222222 23456777777765
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=58.14 E-value=6.4 Score=20.00 Aligned_cols=13 Identities=31% Similarity=0.608 Sum_probs=7.3
Q ss_pred CccEEEeCCCccc
Q 011317 263 QLKILLLDGSDIS 275 (488)
Q Consensus 263 ~L~~L~l~~~~i~ 275 (488)
+|++|+|++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3556666666544
No 84
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=51.89 E-value=11 Score=20.18 Aligned_cols=8 Identities=38% Similarity=0.634 Sum_probs=3.4
Q ss_pred eeEEecCC
Q 011317 318 LQELDLSN 325 (488)
Q Consensus 318 L~~L~l~~ 325 (488)
||+|+|..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 34444443
No 85
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=49.40 E-value=6.5 Score=41.14 Aligned_cols=8 Identities=38% Similarity=0.451 Sum_probs=2.9
Q ss_pred CCccEEEe
Q 011317 403 PRLRWLGV 410 (488)
Q Consensus 403 ~~L~~L~l 410 (488)
|.|-.=.+
T Consensus 1300 P~Ldqc~V 1307 (1516)
T KOG1832|consen 1300 PSLDQCAV 1307 (1516)
T ss_pred ccccceEE
Confidence 33333333
No 86
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=48.16 E-value=25 Score=32.65 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=33.2
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhcc-CCCCCeeEEecCCCCCCC---HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHH
Q 011317 287 ITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLS---DNGILTLATCRVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 287 ~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
=+.++...+.+..+++...+..+..+ +.....+...+.+. ... ...+..+.+.++.|+.|++.++ .|+..++.+
T Consensus 197 d~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~~n~sl~slnvesn-FItg~gi~a 274 (353)
T KOG3735|consen 197 DTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLKENKSLTSLNVESN-FITGLGIMA 274 (353)
T ss_pred CCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHhhcchhhheecccc-ccccHHHHH
Confidence 34555555554444444333333211 11133344444432 222 2223333444555666666555 555555555
Q ss_pred HHc
Q 011317 363 LAS 365 (488)
Q Consensus 363 l~~ 365 (488)
+..
T Consensus 275 ~~~ 277 (353)
T KOG3735|consen 275 LLR 277 (353)
T ss_pred HHH
Confidence 444
No 87
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=46.31 E-value=18 Score=19.08 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=7.1
Q ss_pred CCccEEEeCCCccc
Q 011317 262 PQLKILLLDGSDIS 275 (488)
Q Consensus 262 ~~L~~L~l~~~~i~ 275 (488)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555443
No 88
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=46.31 E-value=18 Score=19.08 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=7.1
Q ss_pred CCccEEEeCCCccc
Q 011317 262 PQLKILLLDGSDIS 275 (488)
Q Consensus 262 ~~L~~L~l~~~~i~ 275 (488)
++|+.|++++|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555443
No 89
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=41.35 E-value=73 Score=29.76 Aligned_cols=89 Identities=19% Similarity=0.184 Sum_probs=57.9
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcC---CCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCR---VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
+.++.+++.+..+++...+..+...+ ...+...+.+- ..++....+++.++. .++.|++|+++++. |++.
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~t-r~~d~vA~a~a~ml~-----~n~sl~slnvesnF-Itg~ 270 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANT-RSSDPVAFAIAEMLK-----ENKSLTSLNVESNF-ITGL 270 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcc-cCCchhHHHHHHHHh-----hcchhhheeccccc-cccH
Confidence 88999999988888866666554433 33444455443 445554445554444 78999999999998 9998
Q ss_pred HHHHhhcc--CCCCccEEEec
Q 011317 393 AFRWLKKP--YFPRLRWLGVT 411 (488)
Q Consensus 393 ~~~~l~~~--~~~~L~~L~l~ 411 (488)
++-.+..+ .-.+|..+.+.
T Consensus 271 gi~a~~~al~~n~tl~el~~d 291 (353)
T KOG3735|consen 271 GIMALLRALQSNKSLTELKND 291 (353)
T ss_pred HHHHHHHHHhccchhhHhhhh
Confidence 87666541 12355555444
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=36.47 E-value=64 Score=31.72 Aligned_cols=39 Identities=21% Similarity=0.060 Sum_probs=19.6
Q ss_pred CCCCccEEeccCCCCCCHHHHHHhhc--cCCCCccEEEecCC
Q 011317 374 YGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGS 413 (488)
Q Consensus 374 ~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~ 413 (488)
.-+.+.+|+|+++. ..+.+-.-+.. ..-.+++.+..+.+
T Consensus 438 stqtl~kldisgn~-mgd~gap~lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 438 STQTLAKLDISGNG-MGDGGAPPLPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred cCcccccccccCCC-cccCCCCcCccccCCCCccCCCCCCCC
Confidence 45677777777776 44433322222 01235555555544
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=31.09 E-value=45 Score=17.95 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=8.1
Q ss_pred CCccEEEeCCCccc
Q 011317 262 PQLKILLLDGSDIS 275 (488)
Q Consensus 262 ~~L~~L~l~~~~i~ 275 (488)
++|+.|+++.|.|.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666543
No 92
>PHA02608 67 prohead core protein; Provisional
Probab=29.32 E-value=42 Score=23.48 Aligned_cols=10 Identities=30% Similarity=0.621 Sum_probs=6.0
Q ss_pred HHHHHhcCCC
Q 011317 460 LEQWLMEGED 469 (488)
Q Consensus 460 ~~~~~~~~~~ 469 (488)
-+.++.+|+.
T Consensus 40 A~sv~iEGEe 49 (80)
T PHA02608 40 ARSVMIEGEE 49 (80)
T ss_pred HHHHhhcCCC
Confidence 3566666654
No 93
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=28.73 E-value=29 Score=29.76 Aligned_cols=12 Identities=33% Similarity=0.745 Sum_probs=8.4
Q ss_pred chHHHHHHHhcC
Q 011317 456 EVDELEQWLMEG 467 (488)
Q Consensus 456 ~~~~~~~~~~~~ 467 (488)
+.+.+..|+-++
T Consensus 227 ~~~dlekWl~~~ 238 (303)
T COG5129 227 KKKDLEKWLGSD 238 (303)
T ss_pred hHHHHHHHhccc
Confidence 456789999444
No 94
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.35 E-value=25 Score=29.41 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=6.6
Q ss_pred CHHHHHHHHhhCC
Q 011317 415 NRDILDALARSRP 427 (488)
Q Consensus 415 ~~~~~~~~~~~~~ 427 (488)
+...++.+....|
T Consensus 105 N~~~ieells~l~ 117 (184)
T KOG4032|consen 105 NYAIIEELLSKLP 117 (184)
T ss_pred cHHHHHHHHHHcc
Confidence 3455555555444
No 95
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=21.72 E-value=35 Score=35.35 Aligned_cols=6 Identities=50% Similarity=1.032 Sum_probs=2.3
Q ss_pred HHHHHH
Q 011317 459 ELEQWL 464 (488)
Q Consensus 459 ~~~~~~ 464 (488)
++++++
T Consensus 876 ~le~~l 881 (911)
T PF05086_consen 876 KLEEYL 881 (911)
T ss_pred HHHHHH
Confidence 344433
Done!