Query 011317
Match_columns 488
No_of_seqs 322 out of 3556
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 05:37:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 6.4E-28 2.2E-32 247.4 33.0 233 184-435 287-539 (594)
2 3ogk_B Coronatine-insensitive 100.0 4.2E-28 1.4E-32 248.6 27.6 214 207-437 288-524 (592)
3 3ogk_B Coronatine-insensitive 100.0 4.3E-26 1.5E-30 233.6 33.5 380 21-433 65-544 (592)
4 2p1m_B Transport inhibitor res 100.0 1E-25 3.5E-30 231.0 32.6 319 66-414 182-542 (594)
5 1z7x_W Ribonuclease inhibitor; 99.9 1.8E-25 6.1E-30 221.8 30.5 378 3-425 4-421 (461)
6 1z7x_W Ribonuclease inhibitor; 99.9 1.4E-24 4.7E-29 215.5 32.5 387 2-432 28-460 (461)
7 2ca6_A RAN GTPase-activating p 99.9 2.1E-21 7.1E-26 187.7 23.7 247 158-414 30-314 (386)
8 2ca6_A RAN GTPase-activating p 99.9 5.2E-21 1.8E-25 184.9 25.4 245 182-439 28-316 (386)
9 4fmz_A Internalin; leucine ric 99.9 9.4E-22 3.2E-26 187.4 18.3 282 65-414 63-344 (347)
10 2ast_B S-phase kinase-associat 99.8 6.5E-20 2.2E-24 173.8 19.2 251 162-434 49-303 (336)
11 2ast_B S-phase kinase-associat 99.8 4.2E-19 1.4E-23 168.3 24.7 198 67-282 92-291 (336)
12 4fmz_A Internalin; leucine ric 99.8 2.8E-20 9.7E-25 177.2 15.1 295 66-430 42-336 (347)
13 1o6v_A Internalin A; bacterial 99.8 6.4E-20 2.2E-24 181.8 14.2 212 158-414 175-386 (466)
14 3v47_A TOLL-like receptor 5B a 99.8 1.5E-21 5E-26 193.3 2.4 182 211-414 211-406 (455)
15 3t6q_A CD180 antigen; protein- 99.8 5.5E-22 1.9E-26 203.7 -3.7 231 158-414 276-511 (606)
16 2id5_A Lingo-1, leucine rich r 99.8 2.7E-21 9.2E-26 192.5 0.8 301 67-414 31-331 (477)
17 1o6v_A Internalin A; bacterial 99.8 6.6E-19 2.3E-23 174.5 17.0 298 66-437 88-386 (466)
18 3t6q_A CD180 antigen; protein- 99.8 1E-21 3.6E-26 201.6 -3.5 207 184-414 276-487 (606)
19 3rgz_A Protein brassinosteroid 99.8 3.9E-22 1.3E-26 209.7 -7.4 155 236-414 393-549 (768)
20 3v47_A TOLL-like receptor 5B a 99.8 3.5E-20 1.2E-24 183.4 4.3 307 66-414 28-382 (455)
21 3rgz_A Protein brassinosteroid 99.8 2.9E-21 1E-25 203.0 -6.4 359 1-430 177-541 (768)
22 2z81_A CD282 antigen, TOLL-lik 99.8 1.7E-18 5.7E-23 175.6 12.7 173 210-414 308-484 (549)
23 2z7x_B TOLL-like receptor 1, v 99.8 1.3E-18 4.4E-23 175.1 10.9 133 259-414 321-455 (520)
24 3vq2_A TLR4, TOLL-like recepto 99.8 3.4E-20 1.2E-24 190.3 -0.9 302 68-414 204-532 (606)
25 2z63_A TOLL-like receptor 4, v 99.8 2.5E-20 8.4E-25 190.0 -3.3 182 235-437 345-529 (570)
26 2id5_A Lingo-1, leucine rich r 99.7 1.3E-19 4.6E-24 180.2 1.1 304 26-387 28-331 (477)
27 3vq2_A TLR4, TOLL-like recepto 99.7 2.9E-20 9.8E-25 190.9 -4.0 86 316-415 424-509 (606)
28 2z81_A CD282 antigen, TOLL-lik 99.7 3.4E-18 1.2E-22 173.3 10.8 85 316-414 334-421 (549)
29 3o6n_A APL1; leucine-rich repe 99.7 4E-18 1.4E-22 165.0 10.0 298 67-429 68-366 (390)
30 1ziw_A TOLL-like receptor 3; i 99.7 8.9E-19 3.1E-23 182.2 3.2 309 67-414 96-441 (680)
31 4eco_A Uncharacterized protein 99.7 6.5E-20 2.2E-24 188.4 -5.8 157 238-414 403-577 (636)
32 3goz_A Leucine-rich repeat-con 99.7 2.2E-16 7.4E-21 150.9 18.0 145 237-391 138-298 (362)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.1E-17 7E-22 167.8 10.7 103 67-196 75-179 (562)
34 1ziw_A TOLL-like receptor 3; i 99.7 1.8E-18 6.1E-23 179.9 2.4 161 236-414 221-392 (680)
35 3o6n_A APL1; leucine-rich repe 99.7 2.1E-18 7.2E-23 166.9 2.5 287 67-415 44-330 (390)
36 2z63_A TOLL-like receptor 4, v 99.7 2.3E-19 7.7E-24 182.9 -4.8 332 65-438 49-506 (570)
37 3oja_B Anopheles plasmodium-re 99.7 2.1E-17 7.2E-22 168.7 9.1 191 67-298 74-264 (597)
38 3oja_B Anopheles plasmodium-re 99.7 6.2E-18 2.1E-22 172.6 2.4 241 67-356 50-291 (597)
39 3goz_A Leucine-rich repeat-con 99.7 1E-15 3.5E-20 146.3 17.6 264 73-360 3-301 (362)
40 3bz5_A Internalin-J, INLJ; leu 99.7 1.6E-17 5.6E-22 163.3 5.1 280 65-414 61-350 (457)
41 2z80_A TOLL-like receptor 2, v 99.7 1.4E-17 4.9E-22 158.7 4.1 66 340-414 247-312 (353)
42 4ecn_A Leucine-rich repeat pro 99.7 1.1E-18 3.6E-23 182.8 -4.3 297 67-414 514-838 (876)
43 4ecn_A Leucine-rich repeat pro 99.7 3.4E-18 1.2E-22 179.0 -0.7 302 66-415 489-818 (876)
44 1xku_A Decorin; proteoglycan, 99.7 9.6E-18 3.3E-22 158.4 2.1 275 67-413 51-329 (330)
45 2z7x_B TOLL-like receptor 1, v 99.7 2.9E-16 9.8E-21 158.0 12.5 174 212-414 302-479 (520)
46 3j0a_A TOLL-like receptor 5; m 99.7 4.9E-19 1.7E-23 188.0 -8.9 328 22-414 17-392 (844)
47 3j0a_A TOLL-like receptor 5; m 99.7 1.1E-18 3.7E-23 185.4 -6.6 340 2-414 24-412 (844)
48 3bz5_A Internalin-J, INLJ; leu 99.6 1.8E-17 6E-22 163.0 1.9 257 64-391 81-353 (457)
49 4eco_A Uncharacterized protein 99.6 4.4E-18 1.5E-22 174.8 -3.5 299 66-413 204-546 (636)
50 2z80_A TOLL-like receptor 2, v 99.6 1E-16 3.5E-21 152.8 5.0 280 67-387 30-312 (353)
51 2ft3_A Biglycan; proteoglycan, 99.6 8.7E-18 3E-22 158.8 -5.8 134 262-414 193-331 (332)
52 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.7E-15 6E-20 153.6 10.4 175 212-414 331-508 (562)
53 4g8a_A TOLL-like receptor 4; l 99.6 3.4E-17 1.1E-21 169.0 -2.8 85 316-414 494-578 (635)
54 1xku_A Decorin; proteoglycan, 99.6 3E-16 1E-20 148.1 3.5 179 212-415 121-305 (330)
55 3o53_A Protein LRIM1, AGAP0063 99.6 4.9E-16 1.7E-20 145.6 1.8 260 70-413 12-272 (317)
56 2ft3_A Biglycan; proteoglycan, 99.5 1E-16 3.5E-21 151.4 -4.7 270 67-387 53-331 (332)
57 3un9_A NLR family member X1; l 99.5 5.1E-13 1.7E-17 127.2 17.9 192 212-414 72-281 (372)
58 3zyj_A Leucine-rich repeat-con 99.5 3.1E-15 1.1E-19 146.9 2.3 133 210-353 158-290 (440)
59 3zyi_A Leucine-rich repeat-con 99.5 4.7E-15 1.6E-19 146.2 3.0 133 210-353 169-301 (452)
60 2z66_A Variable lymphocyte rec 99.5 1.3E-16 4.4E-21 148.9 -8.1 159 235-414 99-259 (306)
61 3zyi_A Leucine-rich repeat-con 99.5 5.9E-15 2E-19 145.5 3.3 229 66-327 73-301 (452)
62 1ozn_A Reticulon 4 receptor; N 99.5 1.8E-14 6.3E-19 132.8 6.1 204 67-297 31-234 (285)
63 3zyj_A Leucine-rich repeat-con 99.5 6.3E-15 2.2E-19 144.7 3.1 229 66-327 62-290 (440)
64 4g8a_A TOLL-like receptor 4; l 99.5 1.1E-15 3.7E-20 157.7 -3.2 112 65-197 73-184 (635)
65 3un9_A NLR family member X1; l 99.5 5.6E-13 1.9E-17 126.9 15.2 178 236-424 71-261 (372)
66 1ozn_A Reticulon 4 receptor; N 99.5 3.8E-15 1.3E-19 137.4 0.0 161 233-414 76-236 (285)
67 1ogq_A PGIP-2, polygalacturona 99.5 5.9E-16 2E-20 144.7 -6.4 107 68-196 50-159 (313)
68 1ogq_A PGIP-2, polygalacturona 99.5 2.7E-16 9.3E-21 147.0 -8.8 253 93-390 50-305 (313)
69 2z66_A Variable lymphocyte rec 99.4 1.2E-15 4.2E-20 142.3 -5.1 229 67-353 27-259 (306)
70 3g06_A SSPH2 (leucine-rich rep 99.4 1.1E-13 3.6E-18 140.4 7.4 244 67-396 60-303 (622)
71 4fcg_A Uncharacterized protein 99.4 5.1E-15 1.7E-19 139.2 -2.2 126 211-352 182-311 (328)
72 3e4g_A ATP synthase subunit S, 99.4 4.4E-13 1.5E-17 111.1 9.2 108 316-432 61-172 (176)
73 3e4g_A ATP synthase subunit S, 99.4 1.9E-13 6.5E-18 113.2 7.0 92 263-359 62-156 (176)
74 3o53_A Protein LRIM1, AGAP0063 99.4 1E-14 3.5E-19 136.6 -0.9 237 154-430 28-265 (317)
75 3g06_A SSPH2 (leucine-rich rep 99.4 1.5E-12 5E-17 132.1 14.3 255 69-414 41-295 (622)
76 4fcg_A Uncharacterized protein 99.4 6E-15 2.1E-19 138.7 -3.1 222 160-414 81-312 (328)
77 1jl5_A Outer protein YOPM; leu 99.4 3.4E-13 1.2E-17 132.4 9.1 259 67-414 110-368 (454)
78 3oja_A Leucine-rich immune mol 99.4 1.9E-14 6.5E-19 142.7 0.1 36 92-136 33-68 (487)
79 1wwl_A Monocyte differentiatio 99.4 7.2E-14 2.4E-18 130.5 3.2 208 124-356 93-309 (312)
80 1h6u_A Internalin H; cell adhe 99.4 4.8E-13 1.6E-17 124.5 7.0 103 159-275 40-142 (308)
81 4glp_A Monocyte differentiatio 99.4 1.5E-13 5.1E-18 128.2 2.9 160 69-247 65-234 (310)
82 3oja_A Leucine-rich immune mol 99.4 3.2E-14 1.1E-18 141.1 -2.3 191 67-298 33-224 (487)
83 1jl5_A Outer protein YOPM; leu 99.3 5E-12 1.7E-16 124.1 11.3 259 66-414 89-348 (454)
84 1h6u_A Internalin H; cell adhe 99.3 1.9E-12 6.5E-17 120.4 7.3 189 185-414 40-228 (308)
85 1wwl_A Monocyte differentiatio 99.3 1.1E-12 3.7E-17 122.5 3.8 208 91-330 93-309 (312)
86 2o6q_A Variable lymphocyte rec 99.3 3E-13 1E-17 123.5 -0.3 158 235-414 59-216 (270)
87 4glp_A Monocyte differentiatio 99.3 1.1E-12 3.6E-17 122.5 2.7 229 159-414 63-305 (310)
88 2z62_A TOLL-like receptor 4, v 99.3 5.5E-13 1.9E-17 122.2 -0.1 108 67-196 27-134 (276)
89 2z62_A TOLL-like receptor 4, v 99.2 2.3E-13 7.8E-18 124.8 -3.4 154 235-414 74-235 (276)
90 2o6q_A Variable lymphocyte rec 99.2 2.3E-12 7.9E-17 117.6 3.1 103 69-196 17-119 (270)
91 3rfs_A Internalin B, repeat mo 99.2 9.3E-13 3.2E-17 120.3 0.5 156 210-387 61-216 (272)
92 3rfs_A Internalin B, repeat mo 99.2 4.2E-12 1.4E-16 115.9 2.4 177 211-414 40-216 (272)
93 4ezg_A Putative uncharacterize 99.2 7.4E-12 2.5E-16 108.3 3.4 104 185-298 43-146 (197)
94 2xwt_C Thyrotropin receptor; s 99.2 3.4E-12 1.2E-16 114.2 0.5 184 67-275 30-218 (239)
95 1h6t_A Internalin B; cell adhe 99.2 4.2E-11 1.4E-15 110.3 7.7 100 185-298 45-144 (291)
96 4ezg_A Putative uncharacterize 99.2 3.4E-11 1.2E-15 104.1 6.6 149 212-387 44-192 (197)
97 2ra8_A Uncharacterized protein 99.1 1.7E-10 5.9E-15 108.8 11.3 60 233-296 168-227 (362)
98 1h6t_A Internalin B; cell adhe 99.1 6.2E-11 2.1E-15 109.2 6.0 103 159-275 45-147 (291)
99 1m9s_A Internalin B; cell inva 99.1 5.2E-11 1.8E-15 120.5 5.6 169 183-387 40-208 (605)
100 2xwt_C Thyrotropin receptor; s 99.1 3.9E-12 1.3E-16 113.8 -2.4 201 93-352 31-236 (239)
101 1p9a_G Platelet glycoprotein I 99.1 1.8E-11 6.3E-16 112.6 1.8 196 67-327 9-206 (290)
102 1p9a_G Platelet glycoprotein I 99.1 1.3E-11 4.6E-16 113.5 -0.2 197 183-414 7-206 (290)
103 2ra8_A Uncharacterized protein 99.1 3.5E-10 1.2E-14 106.7 9.4 48 316-365 279-329 (362)
104 3m19_A Variable lymphocyte rec 99.0 4.2E-11 1.4E-15 107.9 0.8 84 316-414 107-190 (251)
105 1io0_A Tropomodulin; LRR prote 99.0 6E-09 2E-13 88.7 14.0 120 287-414 35-162 (185)
106 1m9s_A Internalin B; cell inva 99.0 1.8E-10 6E-15 116.7 5.2 167 158-352 41-207 (605)
107 1io0_A Tropomodulin; LRR prote 99.0 4.5E-09 1.5E-13 89.5 12.9 126 259-393 33-167 (185)
108 3m19_A Variable lymphocyte rec 99.0 9.5E-11 3.2E-15 105.5 0.8 136 233-387 55-190 (251)
109 1xeu_A Internalin C; cellular 98.9 9.5E-10 3.3E-14 99.5 4.4 58 212-275 41-98 (263)
110 2je0_A Acidic leucine-rich nuc 98.8 6.5E-10 2.2E-14 91.2 1.3 82 316-411 64-148 (149)
111 4ay9_X Follicle-stimulating ho 98.8 1.7E-10 5.9E-15 109.3 -3.0 207 67-300 29-235 (350)
112 2je0_A Acidic leucine-rich nuc 98.8 2.7E-09 9.1E-14 87.5 4.4 128 160-296 17-148 (149)
113 1xeu_A Internalin C; cellular 98.8 3.7E-09 1.3E-13 95.6 3.9 35 210-247 61-95 (263)
114 3sb4_A Hypothetical leucine ri 98.7 2E-09 7E-14 101.0 1.7 126 211-349 201-328 (329)
115 3sb4_A Hypothetical leucine ri 98.7 3.8E-09 1.3E-13 99.1 3.2 225 67-323 100-328 (329)
116 2ell_A Acidic leucine-rich nuc 98.7 2.6E-09 9E-14 89.6 1.8 131 160-299 24-158 (168)
117 1dce_A Protein (RAB geranylger 98.7 5.1E-10 1.8E-14 112.5 -4.3 35 67-103 348-382 (567)
118 2xot_A Amphoterin-induced prot 98.7 2.4E-09 8.2E-14 101.9 0.0 133 212-357 39-177 (361)
119 2ell_A Acidic leucine-rich nuc 98.7 1.4E-08 4.8E-13 85.0 4.4 14 260-273 47-60 (168)
120 2o6s_A Variable lymphocyte rec 98.6 2.2E-09 7.4E-14 93.6 -1.2 40 235-275 50-89 (208)
121 4ay9_X Follicle-stimulating ho 98.6 2.9E-10 9.8E-15 107.8 -7.7 227 159-413 29-256 (350)
122 2xot_A Amphoterin-induced prot 98.6 3.6E-09 1.2E-13 100.6 -0.2 167 186-360 39-207 (361)
123 2v9t_B SLIT homolog 2 protein 98.6 7.4E-09 2.5E-13 90.9 0.9 38 374-414 126-163 (220)
124 3e6j_A Variable lymphocyte rec 98.6 2.3E-08 8E-13 88.4 3.0 38 374-414 133-170 (229)
125 2v9t_B SLIT homolog 2 protein 98.5 1.4E-08 4.7E-13 89.2 1.0 60 316-387 104-163 (220)
126 3e6j_A Variable lymphocyte rec 98.5 2E-08 6.7E-13 88.8 1.8 38 340-387 133-170 (229)
127 2o6s_A Variable lymphocyte rec 98.5 1.9E-08 6.5E-13 87.5 1.6 133 236-387 27-159 (208)
128 1pgv_A TMD-1, tropomodulin TMD 98.5 1.2E-06 4E-11 73.9 12.2 122 286-414 39-168 (197)
129 3cvr_A Invasion plasmid antige 98.5 3.3E-08 1.1E-12 99.0 3.0 20 374-394 228-247 (571)
130 1a9n_A U2A', U2A'; complex (nu 98.5 4.7E-08 1.6E-12 82.5 3.2 85 210-298 62-150 (176)
131 2v70_A SLIT-2, SLIT homolog 2 98.5 2.3E-08 7.9E-13 87.8 0.7 62 340-414 103-164 (220)
132 2v70_A SLIT-2, SLIT homolog 2 98.5 1.5E-08 5.3E-13 88.9 -0.5 11 159-169 56-66 (220)
133 1ds9_A Outer arm dynein; leuci 98.5 8.2E-09 2.8E-13 89.1 -2.2 105 258-387 44-151 (198)
134 3cvr_A Invasion plasmid antige 98.4 2.9E-07 9.9E-12 92.1 7.5 167 67-282 79-250 (571)
135 1a9n_A U2A', U2A'; complex (nu 98.4 2E-07 6.7E-12 78.6 4.7 56 238-298 43-98 (176)
136 1dce_A Protein (RAB geranylger 98.4 2.4E-09 8.1E-14 107.7 -8.7 102 288-414 441-544 (567)
137 1pgv_A TMD-1, tropomodulin TMD 98.4 3.8E-06 1.3E-10 70.8 11.8 102 303-413 30-136 (197)
138 4fdw_A Leucine rich hypothetic 98.3 3E-08 1E-12 95.2 -3.9 259 91-412 111-379 (401)
139 1ds9_A Outer arm dynein; leuci 98.3 7.8E-08 2.7E-12 82.9 -0.9 106 232-352 43-150 (198)
140 2wfh_A SLIT homolog 2 protein 98.0 1.5E-06 5E-11 74.4 2.6 40 235-275 76-115 (193)
141 4fs7_A Uncharacterized protein 98.0 1.7E-07 5.9E-12 90.1 -4.1 284 67-413 70-376 (394)
142 1w8a_A SLIT protein; signaling 98.0 1.6E-06 5.5E-11 74.1 1.9 110 67-197 28-137 (192)
143 1w8a_A SLIT protein; signaling 98.0 7.3E-07 2.5E-11 76.3 -0.6 40 235-275 76-115 (192)
144 2wfh_A SLIT homolog 2 protein 97.9 3.7E-06 1.2E-10 71.9 3.1 62 233-297 50-111 (193)
145 2o6r_A Variable lymphocyte rec 97.9 5.2E-06 1.8E-10 69.8 3.8 109 67-197 27-135 (177)
146 4fdw_A Leucine rich hypothetic 97.9 9.3E-07 3.2E-11 84.8 -1.9 215 69-325 158-379 (401)
147 2o6r_A Variable lymphocyte rec 97.8 5.4E-06 1.8E-10 69.7 2.4 12 341-352 123-134 (177)
148 4gt6_A Cell surface protein; l 97.8 6E-06 2E-10 79.3 1.8 101 69-195 65-169 (394)
149 4fs7_A Uncharacterized protein 97.6 1.1E-06 3.7E-11 84.5 -5.8 150 90-271 68-217 (394)
150 4b8c_D Glucose-repressible alc 97.5 1.3E-05 4.4E-10 83.2 0.4 109 233-357 220-330 (727)
151 4gt6_A Cell surface protein; l 97.5 3.5E-05 1.2E-09 73.9 3.0 281 66-413 85-388 (394)
152 4b8c_D Glucose-repressible alc 97.5 4.3E-05 1.5E-09 79.3 3.6 155 160-332 173-331 (727)
153 3g39_A Variable lymphocyte rec 97.5 4.1E-05 1.4E-09 63.8 2.5 11 186-196 30-40 (170)
154 2r9u_A Variable lymphocyte rec 97.5 4.2E-05 1.4E-09 64.0 2.4 11 186-196 33-43 (174)
155 3g39_A Variable lymphocyte rec 97.3 0.00022 7.4E-09 59.3 4.7 35 68-103 30-64 (170)
156 2r9u_A Variable lymphocyte rec 97.3 0.00023 7.9E-09 59.4 4.8 38 158-197 79-116 (174)
157 2ifg_A High affinity nerve gro 96.7 0.00047 1.6E-08 64.7 2.1 36 210-246 54-89 (347)
158 2ifg_A High affinity nerve gro 96.7 0.00071 2.4E-08 63.5 3.1 65 210-275 29-93 (347)
159 3rw6_A Nuclear RNA export fact 96.7 0.0057 2E-07 54.4 8.4 83 209-295 167-258 (267)
160 3rw6_A Nuclear RNA export fact 96.2 0.0052 1.8E-07 54.7 5.3 44 153-197 163-207 (267)
161 4h09_A Hypothetical leucine ri 93.1 0.016 5.5E-07 54.8 -0.1 131 121-272 212-343 (379)
162 4h09_A Hypothetical leucine ri 92.5 0.039 1.3E-06 52.1 1.7 182 90-297 155-342 (379)
163 3rfe_A Platelet glycoprotein I 71.5 1.3 4.4E-05 34.2 1.2 35 377-414 32-66 (130)
164 3rfe_A Platelet glycoprotein I 70.6 3.3 0.00011 31.8 3.4 34 238-272 32-65 (130)
165 2iu1_A EIF5, eukaryotic transl 59.0 2.6 9E-05 35.4 0.8 16 457-472 144-159 (208)
166 2lz0_A Uncharacterized protein 38.8 13 0.00044 26.9 1.6 37 233-271 16-52 (100)
167 3bbo_G Ribosomal protein L4; l 29.3 18 0.00062 31.9 1.2 12 453-464 248-259 (293)
168 2ful_A EIF-5, eukaryotic trans 24.9 26 0.00089 28.5 1.4 15 457-471 150-164 (177)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.97 E-value=6.4e-28 Score=247.35 Aligned_cols=233 Identities=19% Similarity=0.213 Sum_probs=186.7
Q ss_pred hCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhh-CCCCcCEEec--------cCCCCCChHH
Q 011317 184 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDL--------RDCKNLGDEA 254 (488)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l--------~~~~~~~~~~ 254 (488)
.+++|++|++++|. +++..+..+...+++|++|++.+| +.+.++..+. .+++|+.|++ .++..+++.+
T Consensus 287 ~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~ 363 (594)
T 2p1m_B 287 VCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363 (594)
T ss_dssp HHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred hhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence 45677777777766 677666767777888888888875 4555555554 5888888888 3445677777
Q ss_pred HHhhc-CCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecC-----CCCCCC----HHHHHHHhccCCCCCeeEEecC
Q 011317 255 LRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR-----GCKRLT----DKCISALFDGTSKLQLQELDLS 324 (488)
Q Consensus 255 ~~~l~-~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~-----~~~~l~----~~~~~~l~~~~~~~~L~~L~l~ 324 (488)
+..+. .+++|++|.+..+.+++.++..+.. .+++|+.|++. +|..++ +.++..+...+ ++|++|+++
T Consensus 364 l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~--~~L~~L~L~ 440 (594)
T 2p1m_B 364 LVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHC--KDLRRLSLS 440 (594)
T ss_dssp HHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHC--TTCCEEECC
T ss_pred HHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhC--CCccEEeec
Confidence 76665 4889999988778888888887775 68999999998 677888 77887777666 899999997
Q ss_pred CCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCC
Q 011317 325 NLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPR 404 (488)
Q Consensus 325 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~ 404 (488)
+ .+++.++..+...+++|+.|++++| .+++.++..++. .+++|++|++++|. +++.++..+.. .+++
T Consensus 441 ~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~--------~~~~L~~L~L~~n~-~~~~~~~~~~~-~l~~ 507 (594)
T 2p1m_B 441 G--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLS--------GCDSLRKLEIRDCP-FGDKALLANAS-KLET 507 (594)
T ss_dssp S--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHH--------HCTTCCEEEEESCS-CCHHHHHHTGG-GGGG
T ss_pred C--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHh--------cCCCcCEEECcCCC-CcHHHHHHHHH-hCCC
Confidence 6 7899998888877999999999999 799999988876 79999999999999 68888876665 5899
Q ss_pred ccEEEecCCC-CHHHHHHHHhhCCCceeeccc
Q 011317 405 LRWLGVTGSV-NRDILDALARSRPFLNVACRG 435 (488)
Q Consensus 405 L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~~~ 435 (488)
|+.|++++|. ....+..+....|.+++....
T Consensus 508 L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 508 MRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp SSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred CCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 9999999997 466777788889999876544
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4.2e-28 Score=248.60 Aligned_cols=214 Identities=17% Similarity=0.218 Sum_probs=131.6
Q ss_pred HHhcCCCCCEEEecCCCCCCHHHHHH-hhCCCCcCEEeccCCCCCChHHHHhh-cCCCCccEEEeCC-----------Cc
Q 011317 207 ISATSLSLTHVCLRWCNLLTNHAIKS-LASNTGIKVLDLRDCKNLGDEALRAI-SSLPQLKILLLDG-----------SD 273 (488)
Q Consensus 207 ~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~-----------~~ 273 (488)
+...+++|++|++++|. +....+.. +..+++|+.|++++ .+.+.++..+ ..+++|++|++++ +.
T Consensus 288 ~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 34456677777777764 55555432 45677777777763 3444444444 3567777777773 36
Q ss_pred cchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecC---CCCCCCH----HHHHHHHhcCCCCCe
Q 011317 274 ISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLS---NLPHLSD----NGILTLATCRVPISE 346 (488)
Q Consensus 274 i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~---~~~~l~~----~~~~~l~~~~~~L~~ 346 (488)
+++.++..+.. .+++|++|++ +|+.+++.++..+...+ ++|++|+++ .|+.+++ .++..+...|++|+.
T Consensus 365 ~~~~~~~~l~~-~~~~L~~L~l-~~~~l~~~~~~~l~~~~--~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 365 VSQRGLIALAQ-GCQELEYMAV-YVSDITNESLESIGTYL--KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp CCHHHHHHHHH-HCTTCSEEEE-EESCCCHHHHHHHHHHC--CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred cCHHHHHHHHh-hCccCeEEEe-ecCCccHHHHHHHHhhC--CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 66666665555 5777777777 44567766666665544 677777775 2445553 456555556777777
Q ss_pred EeecCCC-CCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC-CHHHHHHHHh
Q 011317 347 LRVRQCP-LIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV-NRDILDALAR 424 (488)
Q Consensus 347 L~l~~~~-~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 424 (488)
|++++|. .+++.++..++. .+++|++|++++|. +++.++..+.. .|++|++|++++|. ....+..+..
T Consensus 441 L~L~~~~~~l~~~~~~~~~~--------~~~~L~~L~L~~n~-l~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~ 510 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIGQ--------YSPNVRWMLLGYVG-ESDEGLMEFSR-GCPNLQKLEMRGCCFSERAIAAAVT 510 (592)
T ss_dssp EEEECCGGGCCHHHHHHHHH--------SCTTCCEEEECSCC-SSHHHHHHHHT-CCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred EEEecCCCCccHHHHHHHHH--------hCccceEeeccCCC-CCHHHHHHHHh-cCcccCeeeccCCCCcHHHHHHHHH
Confidence 7776653 266666666665 66777777777766 67666665544 46777777777775 4444555555
Q ss_pred hCCCce-eeccccc
Q 011317 425 SRPFLN-VACRGEE 437 (488)
Q Consensus 425 ~~~~l~-~~~~~~~ 437 (488)
..|.++ +...+|.
T Consensus 511 ~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 511 KLPSLRYLWVQGYR 524 (592)
T ss_dssp HCSSCCEEEEESCB
T ss_pred hcCccCeeECcCCc
Confidence 566554 3344443
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.3e-26 Score=233.65 Aligned_cols=380 Identities=17% Similarity=0.217 Sum_probs=253.3
Q ss_pred HHHHHHHhhhccceeeeccccccccceecCCCCCCCCCCCcc-------cCCCCCCCcEEEeecCccChhHHHHHHhcCC
Q 011317 21 FARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQI-------RPSILPGIQKLCLSVDYITDAMVGTISQGLV 93 (488)
Q Consensus 21 ~~~~~~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 93 (488)
...++..+| +++.|+++..+.......... .|... ....+++|++|+|+++.+++..+..+...++
T Consensus 65 ~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~------~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 137 (592)
T 3ogk_B 65 PDRLSRRFP-NLRSLKLKGKPRAAMFNLIPE------NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137 (592)
T ss_dssp HHHHHHHCT-TCSEEEEECSCGGGGGTCSCT------TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHG
T ss_pred hHHHHHhCC-CCeEEEecCCcchhhcccccc------cccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhcc
Confidence 345667788 799999976543221111100 11110 0113677888888877777777776665555
Q ss_pred C-ccEEeccCCCCCCCccccccChHHHHhhh-cCCCccEEEccccccccc----------------------ccccccCh
Q 011317 94 S-LTHLDLRDAPLIEPRITFDLTNSGLQQIN-QHGKLKHLSLIRSQEFLI----------------------TYFRRVND 149 (488)
Q Consensus 94 ~-L~~L~L~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~~----------------------~~~~~~~~ 149 (488)
+ |++|++++|. .++..++..+. .|++|++|+++.+.-... ..+..++.
T Consensus 138 ~~L~~L~L~~~~--------~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~ 209 (592)
T 3ogk_B 138 DDLETLKLDKCS--------GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209 (592)
T ss_dssp GGCCEEEEESCE--------EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH
T ss_pred ccCcEEECcCCC--------CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH
Confidence 5 8888887773 34454555443 677777777765431000 01122334
Q ss_pred HHHHHHHHhCCCCCEEEEcCCCCCCH------------------------------------------------HHHHHH
Q 011317 150 LGILLMADKCASMESICLGGFCRVTD------------------------------------------------TGFKTI 181 (488)
Q Consensus 150 ~~l~~l~~~~~~L~~L~l~~~~~~~~------------------------------------------------~~~~~~ 181 (488)
..+..+...+++|+.|++++|. +.. ..++.+
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~ 288 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPIL 288 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGG
T ss_pred HHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHH
Confidence 5566666677778877777642 111 112222
Q ss_pred HHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHh-hCCCCcCEEeccC----------CCCC
Q 011317 182 LHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL-ASNTGIKVLDLRD----------CKNL 250 (488)
Q Consensus 182 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~----------~~~~ 250 (488)
...+++|++|++++|. +++..+..+...+++|++|++.+ .+.+.++..+ ..+++|++|++++ |+.+
T Consensus 289 ~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred HhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 3345667777777766 66666666677888888888883 4555555554 3688888888884 7777
Q ss_pred ChHHHHhhc-CCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCC---CCCCCH----HHHHHHhccCCCCCeeEEe
Q 011317 251 GDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG---CKRLTD----KCISALFDGTSKLQLQELD 322 (488)
Q Consensus 251 ~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~---~~~l~~----~~~~~l~~~~~~~~L~~L~ 322 (488)
++.++..+. .+++|++|+++.+.+++.++..+.. .+++|+.|++.+ |+.+++ .++..+..++ ++|++|+
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~--~~L~~L~ 442 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC--KKLRRFA 442 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC--TTCCEEE
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC--CCCCEEE
Confidence 777666543 6888888888777888888877776 688888888873 556664 4666666655 7888888
Q ss_pred cCCCC-CCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccC
Q 011317 323 LSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPY 401 (488)
Q Consensus 323 l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 401 (488)
+++|. .+++.++..+...+++|+.|++++| .+++.++..+.. .+++|++|++++|. +++.++..+.. .
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~--------~~~~L~~L~l~~n~-l~~~~~~~~~~-~ 511 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSR--------GCPNLQKLEMRGCC-FSERAIAAAVT-K 511 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHT--------CCTTCCEEEEESCC-CBHHHHHHHHH-H
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHh--------cCcccCeeeccCCC-CcHHHHHHHHH-h
Confidence 87764 3778888888877888888888888 788888887776 78888888888888 88877776654 4
Q ss_pred CCCccEEEecCCC-CHHHHHHHHhhCCCceeec
Q 011317 402 FPRLRWLGVTGSV-NRDILDALARSRPFLNVAC 433 (488)
Q Consensus 402 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~l~~~~ 433 (488)
+++|++|++++|. ....+..+....|.+.+..
T Consensus 512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~ 544 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544 (592)
T ss_dssp CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEE
T ss_pred cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEE
Confidence 8888888888885 3445556666777776653
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1e-25 Score=230.95 Aligned_cols=319 Identities=18% Similarity=0.206 Sum_probs=249.5
Q ss_pred CCCCCcEEEeecCc--cChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccc-----
Q 011317 66 ILPGIQKLCLSVDY--ITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQE----- 138 (488)
Q Consensus 66 ~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~----- 138 (488)
.+++|++|+++++. ++...+..+...+++|++|++++|. .++. ....+..+++|++|.+..+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--------~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV--------PLEK-LATLLQRAPQLEELGTGGYTAEVRPD 252 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS--------CHHH-HHHHHHHCTTCSEEECSBCCCCCCHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC--------cHHH-HHHHHhcCCcceEcccccccCccchh
Confidence 47899999999764 7777788887789999999999883 1222 222345777777777543211
Q ss_pred --------------cccc-cccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHH
Q 011317 139 --------------FLIT-YFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLV 203 (488)
Q Consensus 139 --------------~~~~-~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 203 (488)
.... ++.......+..+...+++|++|++++|. +++..+..+...+++|++|+++++ +.+..
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~ 329 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAG 329 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHH
T ss_pred hHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHH
Confidence 0000 12233334444455568999999999975 888888888889999999999987 56777
Q ss_pred HHHHHhcCCCCCEEEe--------cCCCCCCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeC--C
Q 011317 204 FHDISATSLSLTHVCL--------RWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLD--G 271 (488)
Q Consensus 204 ~~~~~~~~~~L~~L~l--------~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~--~ 271 (488)
+..+...+++|++|++ ..+..+++.++..+. .+++|+.|.+.. ..+++..+..+. .+++|+.|+++ +
T Consensus 330 l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 330 LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 7778888999999999 445678888887776 599999996654 678888887776 68999999999 3
Q ss_pred ----Cccc----hhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCC
Q 011317 272 ----SDIS----DVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVP 343 (488)
Q Consensus 272 ----~~i~----~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 343 (488)
+.++ +.++..+.. .+++|+.|++++ .+++.++..+...+ ++|++|++++| .+++.++..+...+++
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~-~~~~L~~L~L~~--~l~~~~~~~l~~~~--~~L~~L~L~~~-~i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVE-HCKDLRRLSLSG--LLTDKVFEYIGTYA--KKMEMLSVAFA-GDSDLGMHHVLSGCDS 482 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHH-HCTTCCEEECCS--SCCHHHHHHHHHHC--TTCCEEEEESC-CSSHHHHHHHHHHCTT
T ss_pred CCCcccccCCchhhHHHHHHh-hCCCccEEeecC--cccHHHHHHHHHhc--hhccEeeccCC-CCcHHHHHHHHhcCCC
Confidence 4677 667776666 699999999976 68998888876645 89999999996 6899999888778999
Q ss_pred CCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 344 ISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 344 L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
|+.|++++| .+++.++..+.. .+++|+.|++++|+ ++..++..+.. .+|+|+...+....
T Consensus 483 L~~L~L~~n-~~~~~~~~~~~~--------~l~~L~~L~l~~~~-~~~~~~~~l~~-~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 483 LRKLEIRDC-PFGDKALLANAS--------KLETMRSLWMSSCS-VSFGACKLLGQ-KMPKLNVEVIDERG 542 (594)
T ss_dssp CCEEEEESC-SCCHHHHHHTGG--------GGGGSSEEEEESSC-CBHHHHHHHHH-HCTTEEEEEECSSS
T ss_pred cCEEECcCC-CCcHHHHHHHHH--------hCCCCCEEeeeCCC-CCHHHHHHHHH-hCCCCEEEEecCCC
Confidence 999999999 669999888776 78999999999998 69999988855 58999877776554
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.8e-25 Score=221.85 Aligned_cols=378 Identities=20% Similarity=0.243 Sum_probs=248.4
Q ss_pred ccceeeeeecccccchhhHHHHHHHhhhccceeeecccccccc--ceecCCCCCCCCCCCcccCCCCCCCcEEEeecCcc
Q 011317 3 GSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMV--TELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYI 80 (488)
Q Consensus 3 ~l~~l~l~~~~~~~~~~~~~~~~~~lp~~l~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 80 (488)
.|+.|.++. ..+.......++..+| +++.|++++..-... ..+. .....+++|++|+++++.+
T Consensus 4 ~l~~L~Ls~--~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~~~~~~~l~------------~~l~~~~~L~~L~Ls~n~l 68 (461)
T 1z7x_W 4 DIQSLDIQC--EELSDARWAELLPLLQ-QCQVVRLDDCGLTEARCKDIS------------SALRVNPALAELNLRSNEL 68 (461)
T ss_dssp EEEEEEEES--CCCCHHHHHHHHHHHT-TCSEEEEESSCCCHHHHHHHH------------HHHHTCTTCCEEECTTCCC
T ss_pred cceehhhhh--cccCchhHHHHHhhcC-CccEEEccCCCCCHHHHHHHH------------HHHHhCCCcCEEeCCCCcC
Confidence 466677754 4456666777788888 999999985432110 0110 0023368899999998888
Q ss_pred ChhHHHHHHhcCC----CccEEeccCCCCCCCccccccChHH----HHhhhcCCCccEEEcccccccccccccccChHHH
Q 011317 81 TDAMVGTISQGLV----SLTHLDLRDAPLIEPRITFDLTNSG----LQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGI 152 (488)
Q Consensus 81 ~~~~~~~~~~~~~----~L~~L~L~~~~~~~~~~~~~~~~~~----l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l 152 (488)
++..+..+...++ +|++|++++|. +++.+ ...+..+++|++|++++ +.+++.++
T Consensus 69 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~---------i~~~~~~~l~~~l~~~~~L~~L~Ls~---------n~i~~~~~ 130 (461)
T 1z7x_W 69 GDVGVHCVLQGLQTPSCKIQKLSLQNCC---------LTGAGCGVLSSTLRTLPTLQELHLSD---------NLLGDAGL 130 (461)
T ss_dssp HHHHHHHHHHTTCSTTCCCCEEECTTSC---------CBGGGHHHHHHHTTSCTTCCEEECCS---------SBCHHHHH
T ss_pred ChHHHHHHHHHHhhCCCceeEEEccCCC---------CCHHHHHHHHHHHccCCceeEEECCC---------CcCchHHH
Confidence 8887877777676 69999999884 55433 34566888999999963 33555555
Q ss_pred HHHHHh----CCCCCEEEEcCCCCCCHHH---HHHHHHhCCCCceEEecCCCCCCHHHHHHHHh----cCCCCCEEEecC
Q 011317 153 LLMADK----CASMESICLGGFCRVTDTG---FKTILHSCSNLYKLRVSHGTQLTDLVFHDISA----TSLSLTHVCLRW 221 (488)
Q Consensus 153 ~~l~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~ 221 (488)
..+... .++|++|++++| .++..+ +...+..+++|++|+++++. +++.+...+.. ..++|++|++++
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccC
Confidence 554442 457889998885 666533 34445567888999888765 55555554443 356888888888
Q ss_pred CCCCCHHHH----HHhhCCCCcCEEeccCCCCCChHHHHhhc-----CCCCccEEEeCCCccchhHHHHHHh--hcCCCc
Q 011317 222 CNLLTNHAI----KSLASNTGIKVLDLRDCKNLGDEALRAIS-----SLPQLKILLLDGSDISDVGVSYLRL--TVITSL 290 (488)
Q Consensus 222 ~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~~L 290 (488)
| .+...+. ..+..+++|++|+++++ .+.+.+...+. .+++|++|++++|.+++.+...+.. ..+++|
T Consensus 209 n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 286 (461)
T 1z7x_W 209 C-GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286 (461)
T ss_dssp S-CCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC
T ss_pred C-CCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc
Confidence 6 4554332 23446788888888886 56665544332 4788888888888888776433322 137888
Q ss_pred cEEecCCCCCCCHHHHHHHhcc--CCCCCeeEEecCCCCCCCHHHHHHH---HhcCCCCCeEeecCCCCCCHHHHHHHHc
Q 011317 291 VKLSLRGCKRLTDKCISALFDG--TSKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 291 ~~L~l~~~~~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
++|+++++ .+++.+...+... ...++|++|++++| .+++.+...+ ...+++|+.|++++| .+++.++..++.
T Consensus 287 ~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 363 (461)
T 1z7x_W 287 KELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQ 363 (461)
T ss_dssp CEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHH
T ss_pred ceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHH
Confidence 88888886 4766655544332 11258888888885 5765543332 335788888888888 788877776665
Q ss_pred ccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc--cCCCCccEEEecCCC-CHHHHHHHHhh
Q 011317 366 MLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV-NRDILDALARS 425 (488)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~-~~~~~~~~~~~ 425 (488)
.+.. .+++|++|++++|. +++.+...+.. ..+++|++|++++|. ....+..+...
T Consensus 364 ~l~~----~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~ 421 (461)
T 1z7x_W 364 GLGQ----PGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421 (461)
T ss_dssp HHTS----TTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHH
T ss_pred HHcC----CCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHH
Confidence 3321 26788888888886 88754443322 127888888888885 44555555543
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=1.4e-24 Score=215.49 Aligned_cols=387 Identities=23% Similarity=0.255 Sum_probs=259.9
Q ss_pred Cccceeeeeecccccchh---hHHHHHHHhhhccceeeeccccccc--cceecCCCCCCCCCCCcccCCCCCCCcEEEee
Q 011317 2 QGSKALILMFDISLFLRH---NFARVWALASEKLTSLEIGYISSVM--VTELLSPNVEPHQSPNQIRPSILPGIQKLCLS 76 (488)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~---~~~~~~~~lp~~l~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 76 (488)
++|+.|.++.+. +... .+...+..+| +|+.|++++..-.. ...+.... ....++|++|+++
T Consensus 28 ~~L~~L~L~~~~--l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l-----------~~~~~~L~~L~L~ 93 (461)
T 1z7x_W 28 QQCQVVRLDDCG--LTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGL-----------QTPSCKIQKLSLQ 93 (461)
T ss_dssp TTCSEEEEESSC--CCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTT-----------CSTTCCCCEEECT
T ss_pred CCccEEEccCCC--CCHHHHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHH-----------hhCCCceeEEEcc
Confidence 567888886543 3433 3344455556 89999988543211 11110000 1112279999999
Q ss_pred cCccChhHHHHHH---hcCCCccEEeccCCCCCCCccccccChHHHHhhh-----cCCCccEEEcccccccccccccccC
Q 011317 77 VDYITDAMVGTIS---QGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQIN-----QHGKLKHLSLIRSQEFLITYFRRVN 148 (488)
Q Consensus 77 ~~~~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~-----~~~~L~~L~l~~~~~~~~~~~~~~~ 148 (488)
++.+++.....+. ..+++|++|++++|. +++.++..+. ..++|++|+++.+. .....
T Consensus 94 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~---------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~------l~~~~ 158 (461)
T 1z7x_W 94 NCCLTGAGCGVLSSTLRTLPTLQELHLSDNL---------LGDAGLQLLCEGLLDPQCRLEKLQLEYCS------LSAAS 158 (461)
T ss_dssp TSCCBGGGHHHHHHHTTSCTTCCEEECCSSB---------CHHHHHHHHHHHHTSTTCCCCEEECTTSC------CBGGG
T ss_pred CCCCCHHHHHHHHHHHccCCceeEEECCCCc---------CchHHHHHHHHHHhcCCCcceEEECCCCC------CCHHH
Confidence 8888875433333 478899999999983 6666666554 25679999997542 11222
Q ss_pred hHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHH----hCCCCceEEecCCCCCCHHH---HHHHHhcCCCCCEEEecC
Q 011317 149 DLGILLMADKCASMESICLGGFCRVTDTGFKTILH----SCSNLYKLRVSHGTQLTDLV---FHDISATSLSLTHVCLRW 221 (488)
Q Consensus 149 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~ 221 (488)
...+......+++|++|+++++ .+.+.++..+.. ..++|++|++++|. ++..+ +......+++|++|++++
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccC
Confidence 2233444456899999999985 677666655544 35689999999875 44333 334455788999999998
Q ss_pred CCCCCHHHHHHhh-----CCCCcCEEeccCCCCCChHHHH----hhcCCCCccEEEeCCCccchhHHHHHHhh---cCCC
Q 011317 222 CNLLTNHAIKSLA-----SNTGIKVLDLRDCKNLGDEALR----AISSLPQLKILLLDGSDISDVGVSYLRLT---VITS 289 (488)
Q Consensus 222 ~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~i~~~~~~~l~~~---~~~~ 289 (488)
+ .+.+.+...+. .+++|++|++++| .+++.+.. .+..+++|++|++++|.+++.+...+... ..++
T Consensus 237 n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 237 N-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp S-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred C-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 5 67666655443 4789999999986 67776533 34468999999999998888777666551 2368
Q ss_pred ccEEecCCCCCCCHHHHH---HHhccCCCCCeeEEecCCCCCCCHHHHHHHHhc----CCCCCeEeecCCCCCCHHHHHH
Q 011317 290 LVKLSLRGCKRLTDKCIS---ALFDGTSKLQLQELDLSNLPHLSDNGILTLATC----RVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~---~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
|+.|++++|. +++.+.. .....+ ++|++|+++++ .+++.++..+... .++|+.|++++| .+++.++..
T Consensus 315 L~~L~L~~n~-l~~~~~~~l~~~l~~~--~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~ 389 (461)
T 1z7x_W 315 LESLWVKSCS-FTAACCSHFSSVLAQN--RFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSS 389 (461)
T ss_dssp CCEEECTTSC-CBGGGHHHHHHHHHHC--SSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHH
T ss_pred ceeeEcCCCC-CchHHHHHHHHHHhhC--CCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHH
Confidence 9999999875 6654332 222233 78999999985 7887777666542 568999999999 889877777
Q ss_pred HHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc---cCCCCccEEEecCCCC----HHHHHHHHhhCCCceee
Q 011317 363 LASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSVN----RDILDALARSRPFLNVA 432 (488)
Q Consensus 363 l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~l~~~ 432 (488)
++..+. .+++|++|++++|+ +++.++..+.. ...++|+.|.+.++.. .+.+..+....|.+++.
T Consensus 390 l~~~l~-----~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 390 LAATLL-----ANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHHHHH-----HCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHHH-----hCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 665433 68899999999997 88887776654 1234788888887753 34556677788887763
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.1e-21 Score=187.72 Aligned_cols=247 Identities=19% Similarity=0.185 Sum_probs=157.4
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHH---HhCCCCceEEecCCC--CCC---HHHHH---HHHhcCCCCCEEEecCCCCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTIL---HSCSNLYKLRVSHGT--QLT---DLVFH---DISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~--~~~---~~~~~---~~~~~~~~L~~L~l~~~~~~~ 226 (488)
.+++|++|+++++ .++..+...+. ..+++|++|+++++. .++ ...+. .....+++|++|+++++ .+.
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFG 107 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCC
Confidence 4566666666663 55554444332 245666666666542 111 11222 22345677777777774 444
Q ss_pred HH----HHHHhhCCCCcCEEeccCCCCCChHHHHhhc----CC---------CCccEEEeCCCccchhHHHHHHh--hcC
Q 011317 227 NH----AIKSLASNTGIKVLDLRDCKNLGDEALRAIS----SL---------PQLKILLLDGSDISDVGVSYLRL--TVI 287 (488)
Q Consensus 227 ~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~----~~---------~~L~~L~l~~~~i~~~~~~~l~~--~~~ 287 (488)
.. ....+..+++|++|++++| .+++.+...+. .+ ++|++|++++|.+++.++..+.. ..+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 42 2224456778888888775 45444433333 23 88899999988887665553221 148
Q ss_pred CCccEEecCCCCCCCHHHHHHHhc--cCCCCCeeEEecCCCCCCCHHHHHHH---HhcCCCCCeEeecCCCCCCHHHHHH
Q 011317 288 TSLVKLSLRGCKRLTDKCISALFD--GTSKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 288 ~~L~~L~l~~~~~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
++|++|++++| .+++.++..++. -..+++|++|+|+++ .+++.+...+ ...+++|+.|++++| .+++.+...
T Consensus 187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~ 263 (386)
T 2ca6_A 187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDC-LLSARGAAA 263 (386)
T ss_dssp TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTC-CCCHHHHHH
T ss_pred CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCC-CCchhhHHH
Confidence 89999999987 588776554432 112388999999984 6876555444 346789999999999 799887777
Q ss_pred HHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhc---cCCCCccEEEecCCC
Q 011317 363 LASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV 414 (488)
Q Consensus 363 l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~---~~~~~L~~L~l~~~~ 414 (488)
++..+.. +.+++|++|++++|. ++..++..+.. ..+++|++|++++|.
T Consensus 264 l~~~l~~---~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 264 VVDAFSK---LENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHT---CSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHhh---ccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 6653310 038899999999998 88854433322 137999999999986
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5.2e-21 Score=184.90 Aligned_cols=245 Identities=15% Similarity=0.126 Sum_probs=177.8
Q ss_pred HHhCCCCceEEecCCCCCCHHHHHHH---HhcCCCCCEEEecCC--CCCC---HHHHH----HhhCCCCcCEEeccCCCC
Q 011317 182 LHSCSNLYKLRVSHGTQLTDLVFHDI---SATSLSLTHVCLRWC--NLLT---NHAIK----SLASNTGIKVLDLRDCKN 249 (488)
Q Consensus 182 ~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~--~~~~---~~~~~----~l~~~~~L~~L~l~~~~~ 249 (488)
+..+++|++|+++++. ++......+ ...+++|++|+++++ +.+. ..++. .+..+++|++|+++++ .
T Consensus 28 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 105 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-A 105 (386)
T ss_dssp HHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-C
T ss_pred HhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-c
Confidence 4568999999999875 666655544 347899999999986 2222 22332 2458999999999996 5
Q ss_pred CChHH----HHhhcCCCCccEEEeCCCccchhHHHHHHh--hcC---------CCccEEecCCCCCCCHHHHHHH---hc
Q 011317 250 LGDEA----LRAISSLPQLKILLLDGSDISDVGVSYLRL--TVI---------TSLVKLSLRGCKRLTDKCISAL---FD 311 (488)
Q Consensus 250 ~~~~~----~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~---------~~L~~L~l~~~~~l~~~~~~~l---~~ 311 (488)
+...+ ...+..+++|++|++++|.++..+...+.. ..+ ++|++|++++|. +++.++..+ ..
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQ 184 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHH
Confidence 66643 345678999999999999998766655544 013 899999999974 775555432 22
Q ss_pred cCCCCCeeEEecCCCCCCCHHHHHHHHh----cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 312 GTSKLQLQELDLSNLPHLSDNGILTLAT----CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 312 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
.+ ++|++|++++| .+++.++..+.. .+++|+.|++++| .+++.+...++..+. .+++|++|++++|.
T Consensus 185 ~~--~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~-----~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 185 SH--RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALK-----SWPNLRELGLNDCL 255 (386)
T ss_dssp HC--TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGG-----GCTTCCEEECTTCC
T ss_pred hC--CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHc-----cCCCcCEEECCCCC
Confidence 33 79999999995 888877655543 7899999999999 798887777765443 78999999999998
Q ss_pred CCCHHHHHHhhc----cCCCCccEEEecCCCCHH-----HHHHHHhhCCCce-eeccccccc
Q 011317 388 GITQLAFRWLKK----PYFPRLRWLGVTGSVNRD-----ILDALARSRPFLN-VACRGEELG 439 (488)
Q Consensus 388 ~i~~~~~~~l~~----~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~l~-~~~~~~~~~ 439 (488)
+++.+...+.. ..+++|++|++++|.... ....+....|.++ +...++.+.
T Consensus 256 -i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 256 -LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp -CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred -CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 99876554433 238999999999997543 3344445567765 445555443
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=9.4e-22 Score=187.44 Aligned_cols=282 Identities=19% Similarity=0.234 Sum_probs=171.8
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..+++|++|+++++.+.+... ...+++|++|++++|. ++. ++.+..+++|++|+++++. .
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~---------i~~--~~~~~~l~~L~~L~l~~n~------i 122 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK---------ITD--ISALQNLTNLRELYLNEDN------I 122 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC---------CCC--CGGGTTCTTCSEEECTTSC------C
T ss_pred hhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCc---------ccC--chHHcCCCcCCEEECcCCc------c
Confidence 336778888887766665322 3467788888888773 332 2346677788888886442 1
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..+.. ...+++|+.|++++|..+.... . +..+++|++|+++++....... ...+++|++|+++++ .
T Consensus 123 ~~~~~------~~~l~~L~~L~l~~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n-~ 188 (347)
T 4fmz_A 123 SDISP------LANLTKMYSLNLGANHNLSDLS--P-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYN-Q 188 (347)
T ss_dssp CCCGG------GTTCTTCCEEECTTCTTCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTS-C
T ss_pred cCchh------hccCCceeEEECCCCCCccccc--c-hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCC-c
Confidence 12211 2457778888887764443221 1 3567778888887765322211 446678888888775 3
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 304 (488)
+.... .+..+++|+.|+++++ .+..... +..+++|++|++++|.++.... +. .+++|+.|++++|. ++..
T Consensus 189 l~~~~--~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~-l~~~ 258 (347)
T 4fmz_A 189 IEDIS--PLASLTSLHYFTAYVN-QITDITP--VANMTRLNSLKIGNNKITDLSP--LA--NLSQLTWLEIGTNQ-ISDI 258 (347)
T ss_dssp CCCCG--GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSC-CCCC
T ss_pred ccccc--cccCCCccceeecccC-CCCCCch--hhcCCcCCEEEccCCccCCCcc--hh--cCCCCCEEECCCCc-cCCC
Confidence 33221 2557778888888775 3333222 5677788888888876665433 22 47788888887764 4321
Q ss_pred HHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 305 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
..+ ..+++|++|++++| .++... . ...+++|+.|++++| .+++.....+. .+++|++|+++
T Consensus 259 --~~~---~~l~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~L~~n-~l~~~~~~~l~---------~l~~L~~L~L~ 319 (347)
T 4fmz_A 259 --NAV---KDLTKLKMLNVGSN-QISDIS--V-LNNLSQLNSLFLNNN-QLGNEDMEVIG---------GLTNLTTLFLS 319 (347)
T ss_dssp --GGG---TTCTTCCEEECCSS-CCCCCG--G-GGGCTTCSEEECCSS-CCCGGGHHHHH---------TCTTCSEEECC
T ss_pred --hhH---hcCCCcCEEEccCC-ccCCCh--h-hcCCCCCCEEECcCC-cCCCcChhHhh---------ccccCCEEEcc
Confidence 111 12277888888875 454321 1 235778888888887 66665555555 57778888888
Q ss_pred CCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 385 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 385 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+|+ ++.... +. .+++|++|++++|.
T Consensus 320 ~n~-l~~~~~--~~--~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 320 QNH-ITDIRP--LA--SLSKMDSADFANQV 344 (347)
T ss_dssp SSS-CCCCGG--GG--GCTTCSEESSSCC-
T ss_pred CCc-cccccC--hh--hhhccceeehhhhc
Confidence 887 554322 33 37788888887775
No 10
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=6.5e-20 Score=173.84 Aligned_cols=251 Identities=18% Similarity=0.247 Sum_probs=171.7
Q ss_pred CCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHH-HHHHhhCCCCcC
Q 011317 162 MESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH-AIKSLASNTGIK 240 (488)
Q Consensus 162 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~ 240 (488)
++.+++++ ..+....+..+. .++++.|+++++.. ...... ...+++|++|+++++ .+... ....+..+++|+
T Consensus 49 ~~~l~l~~-~~~~~~~~~~~~--~~~l~~L~l~~n~l-~~~~~~--~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 49 WQTLDLTG-KNLHPDVTGRLL--SQGVIAFRCPRSFM-DQPLAE--HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp SSEEECTT-CBCCHHHHHHHH--HTTCSEEECTTCEE-CSCCCS--CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCS
T ss_pred heeecccc-ccCCHHHHHhhh--hccceEEEcCCccc-cccchh--hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCC
Confidence 55666655 244433222211 15666666665431 100000 124567777777775 35544 233455778888
Q ss_pred EEeccCCCCCChHHHHhhcCCCCccEEEeCCC-ccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCC-Ce
Q 011317 241 VLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKL-QL 318 (488)
Q Consensus 241 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~-~L 318 (488)
+|++++| .+.+.....++.+++|++|++++| .+++.++..+.. .+++|++|++++|..+++.++......+ + +|
T Consensus 122 ~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l--~~~L 197 (336)
T 2ast_B 122 NLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHV--SETI 197 (336)
T ss_dssp EEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHS--CTTC
T ss_pred EEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhc--ccCC
Confidence 8888876 466666667777888888888888 677766665444 5888888888887668776665555444 7 88
Q ss_pred eEEecCCCC-CCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHh
Q 011317 319 QELDLSNLP-HLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 397 (488)
Q Consensus 319 ~~L~l~~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 397 (488)
++|++++|. .+++.++......+++|+.|++++|..+++.++..+. .+++|++|++++|..+++.++..+
T Consensus 198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---------~l~~L~~L~l~~~~~~~~~~~~~l 268 (336)
T 2ast_B 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------QLNYLQHLSLSRCYDIIPETLLEL 268 (336)
T ss_dssp CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG---------GCTTCCEEECTTCTTCCGGGGGGG
T ss_pred CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh---------CCCCCCEeeCCCCCCCCHHHHHHH
Confidence 888888865 6777777766667889999999888557777666655 578899999999877777777666
Q ss_pred hccCCCCccEEEecCCCCHHHHHHHHhhCCCceeecc
Q 011317 398 KKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACR 434 (488)
Q Consensus 398 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~ 434 (488)
.. +++|+.|++++|.....+..+....|.+++.+.
T Consensus 269 ~~--~~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 269 GE--IPTLKTLQVFGIVPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp GG--CTTCCEEECTTSSCTTCHHHHHHHSTTSEESCC
T ss_pred hc--CCCCCEEeccCccCHHHHHHHHhhCcceEEecc
Confidence 65 889999999998767677778778888887644
No 11
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.2e-19 Score=168.29 Aligned_cols=198 Identities=18% Similarity=0.251 Sum_probs=97.8
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+++++.+.+..+..+...+++|++|++++| .+++.....++.+++|++|++++ +..
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~---------~l~~~~~~~l~~~~~L~~L~L~~--------~~~ 154 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL---------RLSDPIVNTLAKNSNLVRLNLSG--------CSG 154 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC---------BCCHHHHHHHTTCTTCSEEECTT--------CBS
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc---------ccCHHHHHHHhcCCCCCEEECCC--------CCC
Confidence 4555566665555555444444445556666666555 24444444555555555555532 223
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCC-CCceEEecCCC-CCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCS-NLYKLRVSHGT-QLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
+++..+......+++|++|++++|..+++.++..++..++ +|++|++++|. .+++..+......+++|++|++++|..
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 4444444444445555555555543555444444445555 55555555543 344444444444455555555555433
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHH
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYL 282 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l 282 (488)
+++.....+..+++|++|++++|..+.+.++..+..+++|+.|++++| +++.++..+
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH
Confidence 433333344445555555555544444444444444555555555554 444444333
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=2.8e-20 Score=177.15 Aligned_cols=295 Identities=19% Similarity=0.205 Sum_probs=211.4
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
.+++|++|+++++.+... ..+ ..+++|++|++++|. +++. ..+..+++|++|+++++. ..
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~-~~~~~L~~L~l~~n~---------i~~~--~~~~~l~~L~~L~L~~n~------i~ 101 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGI-EYLTNLEYLNLNGNQ---------ITDI--SPLSNLVKLTNLYIGTNK------IT 101 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTG-GGCTTCCEEECCSSC---------CCCC--GGGTTCTTCCEEECCSSC------CC
T ss_pred hcccccEEEEeCCccccc--hhh-hhcCCccEEEccCCc---------cccc--hhhhcCCcCCEEEccCCc------cc
Confidence 478999999998776652 223 479999999999984 4432 227889999999997653 22
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
.+. ....+++|++|+++++ .+..... +..+++|+.|+++++........ ...+++|++|+++++. +
T Consensus 102 ~~~------~~~~l~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~-~ 167 (347)
T 4fmz_A 102 DIS------ALQNLTNLRELYLNED-NISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESK-V 167 (347)
T ss_dssp CCG------GGTTCTTCSEEECTTS-CCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSC-C
T ss_pred Cch------HHcCCCcCCEEECcCC-cccCchh---hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCC-c
Confidence 221 1356899999999995 5554322 46799999999999865543221 5678999999999964 3
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 305 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 305 (488)
.... .+..+++|+.|+++++ .+.... .+..+++|+.|++++|.+..... +. .+++|+.|++++|. ++...
T Consensus 168 ~~~~--~~~~l~~L~~L~l~~n-~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~--~~~~L~~L~l~~n~-l~~~~ 237 (347)
T 4fmz_A 168 KDVT--PIANLTDLYSLSLNYN-QIEDIS--PLASLTSLHYFTAYVNQITDITP--VA--NMTRLNSLKIGNNK-ITDLS 237 (347)
T ss_dssp CCCG--GGGGCTTCSEEECTTS-CCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GG--GCTTCCEEECCSSC-CCCCG
T ss_pred CCch--hhccCCCCCEEEccCC-cccccc--cccCCCccceeecccCCCCCCch--hh--cCCcCCEEEccCCc-cCCCc
Confidence 3222 2678999999999996 444332 36789999999999998776543 33 48999999999975 44221
Q ss_pred HHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccC
Q 011317 306 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 385 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 385 (488)
. .. .+++|++|+++++ .++.. .. ...+++|+.|++++| .+++. ..+. .+++|+.|++++
T Consensus 238 ~---~~--~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~l~~n-~l~~~--~~~~---------~l~~L~~L~L~~ 296 (347)
T 4fmz_A 238 P---LA--NLSQLTWLEIGTN-QISDI--NA-VKDLTKLKMLNVGSN-QISDI--SVLN---------NLSQLNSLFLNN 296 (347)
T ss_dssp G---GT--TCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCCC--GGGG---------GCTTCSEEECCS
T ss_pred c---hh--cCCCCCEEECCCC-ccCCC--hh-HhcCCCcCEEEccCC-ccCCC--hhhc---------CCCCCCEEECcC
Confidence 1 22 2389999999996 55532 11 236899999999999 66653 2222 789999999999
Q ss_pred CCCCCHHHHHHhhccCCCCccEEEecCCCCHHHHHHHHhhCCCce
Q 011317 386 CGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLN 430 (488)
Q Consensus 386 ~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 430 (488)
|. ++......+.. +++|++|++++|....... ....+.++
T Consensus 297 n~-l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 297 NQ-LGNEDMEVIGG--LTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp SC-CCGGGHHHHHT--CTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred Cc-CCCcChhHhhc--cccCCEEEccCCccccccC--hhhhhccc
Confidence 98 88777777775 9999999999997432222 33455553
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=6.4e-20 Score=181.76 Aligned_cols=212 Identities=23% Similarity=0.248 Sum_probs=98.3
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
.+++|+.|+++++ .+.... . +..+++|++|+++++......+ ...+++|++|+++++ .+... ..+..++
T Consensus 175 ~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~--~~l~~l~ 243 (466)
T 1o6v_A 175 NLTTLERLDISSN-KVSDIS--V-LAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGN-QLKDI--GTLASLT 243 (466)
T ss_dssp TCTTCCEEECCSS-CCCCCG--G-GGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSS-CCCCC--GGGGGCT
T ss_pred cCCCCCEEECcCC-cCCCCh--h-hccCCCCCEEEecCCccccccc----ccccCCCCEEECCCC-Ccccc--hhhhcCC
Confidence 3555555555553 233211 1 2345555666555543211111 234555666666553 22221 2344555
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 317 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 317 (488)
+|+.|+++++. +.... .+..+++|+.|++++|.+..... +. .+++|+.|++++|. ++... .+ . .+++
T Consensus 244 ~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~L~~n~-l~~~~--~~-~--~l~~ 310 (466)
T 1o6v_A 244 NLTDLDLANNQ-ISNLA--PLSGLTKLTELKLGANQISNISP--LA--GLTALTNLELNENQ-LEDIS--PI-S--NLKN 310 (466)
T ss_dssp TCSEEECCSSC-CCCCG--GGTTCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSC-CSCCG--GG-G--GCTT
T ss_pred CCCEEECCCCc-cccch--hhhcCCCCCEEECCCCccCcccc--cc--CCCccCeEEcCCCc-ccCch--hh-c--CCCC
Confidence 66666665542 22211 14455666666666655443222 22 35666666666543 22110 01 1 1156
Q ss_pred eeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHh
Q 011317 318 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 397 (488)
Q Consensus 318 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 397 (488)
|++|++++| .+++... ...+++|+.|++++| .+++. ..+. .+++|+.|++++|. +++... +
T Consensus 311 L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~l~---------~l~~L~~L~l~~n~-l~~~~~--~ 371 (466)
T 1o6v_A 311 LTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDV--SSLA---------NLTNINWLSAGHNQ-ISDLTP--L 371 (466)
T ss_dssp CSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCC--GGGT---------TCTTCCEEECCSSC-CCBCGG--G
T ss_pred CCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCc--hhhc---------cCCCCCEEeCCCCc-cCccch--h
Confidence 666666664 3332211 124566666666666 44432 1111 55666666666665 443221 2
Q ss_pred hccCCCCccEEEecCCC
Q 011317 398 KKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 398 ~~~~~~~L~~L~l~~~~ 414 (488)
. .+++|+.|++++|.
T Consensus 372 ~--~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 372 A--NLTRITQLGLNDQA 386 (466)
T ss_dssp T--TCTTCCEEECCCEE
T ss_pred h--cCCCCCEEeccCCc
Confidence 2 36666666666653
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=1.5e-21 Score=193.28 Aligned_cols=182 Identities=16% Similarity=0.072 Sum_probs=117.3
Q ss_pred CCCCCEEEecCCCCCCHHHHHHhh---CCCCcCEEeccCCCCCCh---------HHHHhhc--CCCCccEEEeCCCccch
Q 011317 211 SLSLTHVCLRWCNLLTNHAIKSLA---SNTGIKVLDLRDCKNLGD---------EALRAIS--SLPQLKILLLDGSDISD 276 (488)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~---------~~~~~l~--~~~~L~~L~l~~~~i~~ 276 (488)
+++|++|+++++ .+.......+. ..++|+.|+++++..... .....+. ..++|+.|++++|.+..
T Consensus 211 ~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 211 NTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp TCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred cceeeeEecCCC-cccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence 357888888874 45444433333 347888888876532211 0001111 34689999999998876
Q ss_pred hHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCC
Q 011317 277 VGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIG 356 (488)
Q Consensus 277 ~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~ 356 (488)
.....+.. +++|+.|++++|. ++......+ ..+++|++|+++++ .++......+ ..+++|+.|++++| .++
T Consensus 290 ~~~~~~~~--l~~L~~L~Ls~n~-l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~ 360 (455)
T 3v47_A 290 LLKSVFSH--FTDLEQLTLAQNE-INKIDDNAF---WGLTHLLKLNLSQN-FLGSIDSRMF-ENLDKLEVLDLSYN-HIR 360 (455)
T ss_dssp ECTTTTTT--CTTCCEEECTTSC-CCEECTTTT---TTCTTCCEEECCSS-CCCEECGGGG-TTCTTCCEEECCSS-CCC
T ss_pred cchhhccc--CCCCCEEECCCCc-ccccChhHh---cCcccCCEEECCCC-ccCCcChhHh-cCcccCCEEECCCC-ccc
Confidence 54444444 8999999999864 542211111 12289999999995 6653322222 26899999999999 665
Q ss_pred HHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 357 DTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
......+. .+++|++|++++|. ++......+. .+++|++|++++|+
T Consensus 361 ~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 361 ALGDQSFL---------GLPNLKELALDTNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 406 (455)
T ss_dssp EECTTTTT---------TCTTCCEEECCSSC-CSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ccChhhcc---------ccccccEEECCCCc-cccCCHhHhc--cCCcccEEEccCCC
Confidence 43332332 78999999999997 7754433344 48999999999876
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.81 E-value=5.5e-22 Score=203.68 Aligned_cols=231 Identities=16% Similarity=0.147 Sum_probs=103.9
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
.+++|+.|+++++ .+.. ++..+..+++|++|+++++.. .... ......+++|++|+++++......+...+..++
T Consensus 276 ~l~~L~~L~l~~n-~l~~--lp~~l~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 276 CFSGLQELDLTAT-HLSE--LPSGLVGLSTLKKLVLSANKF-ENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TCTTCSEEECTTS-CCSC--CCSSCCSCTTCCEEECTTCCC-SBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred cccCCCEEeccCC-ccCC--CChhhcccccCCEEECccCCc-CcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 3566666666663 3331 111123456666666665542 1110 112334566666666664222111111234566
Q ss_pred CcCEEeccCCCCCChHH--HHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011317 238 GIKVLDLRDCKNLGDEA--LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 315 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 315 (488)
+|++|+++++ .+.... ...+..+++|++|++++|.+.......+.. +++|+.|++++|. ++......... .+
T Consensus 351 ~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~~~~~~~~--~l 424 (606)
T 3t6q_A 351 NLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE--CPQLELLDLAFTR-LKVKDAQSPFQ--NL 424 (606)
T ss_dssp TCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT--CTTCSEEECTTCC-EECCTTCCTTT--TC
T ss_pred cCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC--CccCCeEECCCCc-CCCcccchhhh--Cc
Confidence 6666666654 333322 233455666666666666554333222323 5666666666543 21100000001 12
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHH---HHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSV---IALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~---~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
++|++|+++++ .++......+. .+++|+.|++++| .+++..+ ..+. .+++|++|++++|. ++..
T Consensus 425 ~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~~~---------~l~~L~~L~Ls~n~-l~~~ 491 (606)
T 3t6q_A 425 HLLKVLNLSHS-LLDISSEQLFD-GLPALQHLNLQGN-HFPKGNIQKTNSLQ---------TLGRLEILVLSFCD-LSSI 491 (606)
T ss_dssp TTCCEEECTTC-CCBTTCTTTTT-TCTTCCEEECTTC-BCGGGEECSSCGGG---------GCTTCCEEECTTSC-CCEE
T ss_pred ccCCEEECCCC-ccCCcCHHHHh-CCCCCCEEECCCC-CCCccccccchhhc---------cCCCccEEECCCCc-cCcc
Confidence 56666666663 33321111111 3566666666666 3332111 0011 45556666666654 4433
Q ss_pred HHHHhhccCCCCccEEEecCCC
Q 011317 393 AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 393 ~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
....+.. +++|+.|++++|.
T Consensus 492 ~~~~~~~--l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 492 DQHAFTS--LKMMNHVDLSHNR 511 (606)
T ss_dssp CTTTTTT--CTTCCEEECCSSC
T ss_pred Chhhhcc--ccCCCEEECCCCc
Confidence 2223332 5566666666554
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=2.7e-21 Score=192.52 Aligned_cols=301 Identities=18% Similarity=0.136 Sum_probs=186.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++++.|+|+++.+.......+ ..+++|++|+|++|. ++......+..+++|++|+++.+. ...
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~~ 94 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENI---------VSAVEPGAFNNLFNLRTLGLRSNR------LKL 94 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECCSSC------CCS
T ss_pred CCCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCc---------cCEeChhhhhCCccCCEEECCCCc------CCc
Confidence 4678888888777765433333 368888888888873 444344557788888888886542 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... .+..+++|++|+++++ .+... ....+..+++|++|+++++.. ..... .....+++|++|+++++ .+.
T Consensus 95 ~~~~----~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n-~l~ 165 (477)
T 2id5_A 95 IPLG----VFTGLSNLTKLDISEN-KIVIL-LDYMFQDLYNLKSLEVGDNDL-VYISH-RAFSGLNSLEQLTLEKC-NLT 165 (477)
T ss_dssp CCTT----SSTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEEECCTTC-CEECT-TSSTTCTTCCEEEEESC-CCS
T ss_pred cCcc----cccCCCCCCEEECCCC-ccccC-ChhHccccccCCEEECCCCcc-ceeCh-hhccCCCCCCEEECCCC-cCc
Confidence 2221 1235788888888884 55433 122235678888888887642 21110 12345678888888885 444
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
......+..+++|+.|+++++ .+.......+..+++|+.|++++|............ ..+|+.|++++|. ++....
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n~-l~~~~~ 241 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY--GLNLTSLSITHCN-LTAVPY 241 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--TCCCSEEEEESSC-CCSCCH
T ss_pred ccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCccccc--CccccEEECcCCc-ccccCH
Confidence 444445667888888888885 455554556677888888888887443322222222 4578888888864 442221
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
..+ . .+++|++|+++++ .++......+ ..+++|+.|++++| .++......+. .+++|+.|++++|
T Consensus 242 ~~~-~--~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~---------~l~~L~~L~L~~N 306 (477)
T 2id5_A 242 LAV-R--HLVYLRFLNLSYN-PISTIEGSML-HELLRLQEIQLVGG-QLAVVEPYAFR---------GLNYLRVLNVSGN 306 (477)
T ss_dssp HHH-T--TCTTCCEEECCSS-CCCEECTTSC-TTCTTCCEEECCSS-CCSEECTTTBT---------TCTTCCEEECCSS
T ss_pred HHh-c--CccccCeeECCCC-cCCccChhhc-cccccCCEEECCCC-ccceECHHHhc---------CcccCCEEECCCC
Confidence 122 1 1278888888884 5553222222 25788888888888 55543222222 6788888888888
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 387 GGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 387 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
. ++......+. .+++|+.|++++|+
T Consensus 307 ~-l~~~~~~~~~--~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 307 Q-LTTLEESVFH--SVGNLETLILDSNP 331 (477)
T ss_dssp C-CSCCCGGGBS--CGGGCCEEECCSSC
T ss_pred c-CceeCHhHcC--CCcccCEEEccCCC
Confidence 6 6654433343 37888888888876
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.80 E-value=6.6e-19 Score=174.47 Aligned_cols=298 Identities=20% Similarity=0.268 Sum_probs=188.8
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
.+++|++|+++.+.+..... ...+++|++|++++|. ++.. ..+..+++|++|+++++. ..
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~---------l~~~--~~~~~l~~L~~L~l~~n~------l~ 147 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQ---------ITDI--DPLKNLTNLNRLELSSNT------IS 147 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC---------CCCC--GGGTTCTTCSEEEEEEEE------EC
T ss_pred ccccCCEEECCCCccccChh---hcCCCCCCEEECCCCC---------CCCC--hHHcCCCCCCEEECCCCc------cC
Confidence 36677777777665554322 2367777777777763 3221 226677777777776542 11
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
.+.. ...+++|+.|++++ .+... .. +..+++|+.|+++++.. .... ....+++|++|+++++. +
T Consensus 148 ~~~~------~~~l~~L~~L~l~~--~~~~~--~~-~~~l~~L~~L~l~~n~l-~~~~---~l~~l~~L~~L~l~~n~-l 211 (466)
T 1o6v_A 148 DISA------LSGLTSLQQLSFGN--QVTDL--KP-LANLTTLERLDISSNKV-SDIS---VLAKLTNLESLIATNNQ-I 211 (466)
T ss_dssp CCGG------GTTCTTCSEEEEEE--SCCCC--GG-GTTCTTCCEEECCSSCC-CCCG---GGGGCTTCSEEECCSSC-C
T ss_pred CChh------hccCCcccEeecCC--cccCc--hh-hccCCCCCEEECcCCcC-CCCh---hhccCCCCCEEEecCCc-c
Confidence 1211 24577788888764 22211 11 35678889998887753 2211 24577899999998863 3
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 305 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 305 (488)
.... .+..+++|+.|+++++ .+... ..+..+++|+.|++++|.+..... +. .+++|+.|++++|. ++...
T Consensus 212 ~~~~--~~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~-l~~~~ 281 (466)
T 1o6v_A 212 SDIT--PLGILTNLDELSLNGN-QLKDI--GTLASLTNLTDLDLANNQISNLAP--LS--GLTKLTELKLGANQ-ISNIS 281 (466)
T ss_dssp CCCG--GGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSC-CCCCG
T ss_pred cccc--cccccCCCCEEECCCC-Ccccc--hhhhcCCCCCEEECCCCccccchh--hh--cCCCCCEEECCCCc-cCccc
Confidence 3221 2567889999999886 34432 356788999999999987765432 33 48899999999875 43211
Q ss_pred HHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccC
Q 011317 306 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 385 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 385 (488)
.+ . .+++|++|+++++ .++.... ...+++|+.|++++| .+++... + . .+++|+.|++++
T Consensus 282 --~~-~--~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~--~-~--------~l~~L~~L~l~~ 340 (466)
T 1o6v_A 282 --PL-A--GLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN-NISDISP--V-S--------SLTKLQRLFFYN 340 (466)
T ss_dssp --GG-T--TCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCGG--G-G--------GCTTCCEEECCS
T ss_pred --cc-c--CCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCC-cCCCchh--h-c--------cCccCCEeECCC
Confidence 12 1 2389999999985 5553221 236899999999999 5554322 2 2 789999999999
Q ss_pred CCCCCHHHHHHhhccCCCCccEEEecCCCCHHHHHHHHhhCCCce-eeccccc
Q 011317 386 CGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLN-VACRGEE 437 (488)
Q Consensus 386 ~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 437 (488)
|. +++. ..+. .+++|+.|++++|....... ....+.++ +...++.
T Consensus 341 n~-l~~~--~~l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 341 NK-VSDV--SSLA--NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp SC-CCCC--GGGT--TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred Cc-cCCc--hhhc--cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 97 6653 3454 48999999999996432222 34445553 4444443
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=1e-21 Score=201.57 Aligned_cols=207 Identities=17% Similarity=0.102 Sum_probs=113.1
Q ss_pred hCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCC
Q 011317 184 SCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQ 263 (488)
Q Consensus 184 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 263 (488)
.+++|++|+++++. ++. +......+++|++|+++++ .+.......+..+++|+.|+++++..........+..+++
T Consensus 276 ~l~~L~~L~l~~n~-l~~--lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 276 CFSGLQELDLTATH-LSE--LPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TCTTCSEEECTTSC-CSC--CCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred cccCCCEEeccCCc-cCC--CChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 35566666666543 221 1111234556666666664 3332222334466667777766653222223334556777
Q ss_pred ccEEEeCCCccchhH--HHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC
Q 011317 264 LKILLLDGSDISDVG--VSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR 341 (488)
Q Consensus 264 L~~L~l~~~~i~~~~--~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 341 (488)
|++|++++|.+.... ...+. .+++|+.|++++|. ++......+ . .+++|++|+++++ .++..........+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~~~~~-~--~l~~L~~L~l~~n-~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLR--NLSHLQSLNLSYNE-PLSLKTEAF-K--ECPQLELLDLAFT-RLKVKDAQSPFQNL 424 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTT--TCTTCCEEECCSCS-CEEECTTTT-T--TCTTCSEEECTTC-CEECCTTCCTTTTC
T ss_pred CCEEECCCCccccccCcchhcc--cCCCCCEEECCCCc-CCcCCHHHh-c--CCccCCeEECCCC-cCCCcccchhhhCc
Confidence 777777777665433 12222 36777777777753 321100111 1 1277888888874 33322111112257
Q ss_pred CCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH---HHhhccCCCCccEEEecCCC
Q 011317 342 VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF---RWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 342 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~---~~l~~~~~~~L~~L~l~~~~ 414 (488)
++|+.|++++| .++......+. .+++|++|++++|. +++..+ ..+. .+++|+.|++++|.
T Consensus 425 ~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~L~~n~-l~~~~~~~~~~~~--~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 425 HLLKVLNLSHS-LLDISSEQLFD---------GLPALQHLNLQGNH-FPKGNIQKTNSLQ--TLGRLEILVLSFCD 487 (606)
T ss_dssp TTCCEEECTTC-CCBTTCTTTTT---------TCTTCCEEECTTCB-CGGGEECSSCGGG--GCTTCCEEECTTSC
T ss_pred ccCCEEECCCC-ccCCcCHHHHh---------CCCCCCEEECCCCC-CCccccccchhhc--cCCCccEEECCCCc
Confidence 88888888888 44432222222 68899999999997 554221 2233 38899999999986
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=3.9e-22 Score=209.67 Aligned_cols=155 Identities=15% Similarity=0.071 Sum_probs=70.5
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHhccC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGT 313 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~ 313 (488)
+++|+.|++++| .+.......+..+++|+.|++++|.++......+.. +++|+.|++++|.... +..+..+
T Consensus 393 ~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l---- 465 (768)
T 3rgz_A 393 KNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS--LSKLRDLKLWLNMLEGEIPQELMYV---- 465 (768)
T ss_dssp TCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGC----
T ss_pred cCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc--CCCCCEEECCCCcccCcCCHHHcCC----
Confidence 344555555443 222222333445555666666655444322222333 5566666665543111 1111111
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHH
Q 011317 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 393 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 393 (488)
++|++|+++++ .++......+. .+++|+.|++++| .+++.....+. .+++|++|++++|. ++...
T Consensus 466 --~~L~~L~L~~N-~l~~~~p~~l~-~l~~L~~L~L~~N-~l~~~~p~~~~---------~l~~L~~L~L~~N~-l~~~~ 530 (768)
T 3rgz_A 466 --KTLETLILDFN-DLTGEIPSGLS-NCTNLNWISLSNN-RLTGEIPKWIG---------RLENLAILKLSNNS-FSGNI 530 (768)
T ss_dssp --TTCCEEECCSS-CCCSCCCGGGG-GCTTCCEEECCSS-CCCSCCCGGGG---------GCTTCCEEECCSSC-CEEEC
T ss_pred --CCceEEEecCC-cccCcCCHHHh-cCCCCCEEEccCC-ccCCcCChHHh---------cCCCCCEEECCCCc-ccCcC
Confidence 55666666663 33311111111 4566666666666 33322111122 45566666666665 44322
Q ss_pred HHHhhccCCCCccEEEecCCC
Q 011317 394 FRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 394 ~~~l~~~~~~~L~~L~l~~~~ 414 (488)
...+.. +++|+.|++++|.
T Consensus 531 p~~l~~--l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 531 PAELGD--CRSLIWLDLNTNL 549 (768)
T ss_dssp CGGGGG--CTTCCEEECCSSE
T ss_pred CHHHcC--CCCCCEEECCCCc
Confidence 233333 6666666666653
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.78 E-value=3.5e-20 Score=183.39 Aligned_cols=307 Identities=14% Similarity=0.111 Sum_probs=177.3
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccC-hHHHHhhhcCCCccEEEcccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLT-NSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..++|++|+++++.+.......+ ..+++|++|++++|. +. ......+..+++|++|+++++. .
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------~~~~i~~~~~~~l~~L~~L~Ls~n~------l 91 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQT---------PGLVIRNNTFRGLSSLIILKLDYNQ------F 91 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCS---------TTCEECTTTTTTCTTCCEEECTTCT------T
T ss_pred CCCccCEEEecCCccCcCChhHh-ccCccccEEECcCCc---------ccceECcccccccccCCEEeCCCCc------c
Confidence 34789999999988876434334 479999999999984 32 2123457789999999997653 2
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHH-HHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFK-TILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 223 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 223 (488)
..+.... ...+++|++|+++++ .+....+. ..+..+++|++|+++++.. .......+...+++|++|+++++
T Consensus 92 ~~~~~~~----~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n- 164 (455)
T 3v47_A 92 LQLETGA----FNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLDLTFN- 164 (455)
T ss_dssp CEECTTT----TTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBC-CSCCCCGGGGGCTTCCEEECTTC-
T ss_pred CccChhh----ccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCcc-CccCcccccCCCCcccEEeCCCC-
Confidence 2221111 245899999999995 66643232 2245689999999998763 22211223567899999999985
Q ss_pred CCCHHHHHHhh--CCCCcCEEeccCCCCCChHHH--------HhhcCCCCccEEEeCCCccchhHHHHHHhh-cCCCccE
Q 011317 224 LLTNHAIKSLA--SNTGIKVLDLRDCKNLGDEAL--------RAISSLPQLKILLLDGSDISDVGVSYLRLT-VITSLVK 292 (488)
Q Consensus 224 ~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~-~~~~L~~ 292 (488)
.+.......+. ..++|+.|+++++. +..... ..+..+++|++|++++|.+.......+... ..++|+.
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred cccccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceee
Confidence 33322222232 23678888888753 322211 122356788888888888776655544430 1245555
Q ss_pred EecCCCCC-----------------------------------CCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHH
Q 011317 293 LSLRGCKR-----------------------------------LTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTL 337 (488)
Q Consensus 293 L~l~~~~~-----------------------------------l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l 337 (488)
|+++++.. ++...... . ..+++|++|+++++ .++......+
T Consensus 244 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~--~~l~~L~~L~Ls~n-~l~~~~~~~~ 319 (455)
T 3v47_A 244 LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV-F--SHFTDLEQLTLAQN-EINKIDDNAF 319 (455)
T ss_dssp EECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT-T--TTCTTCCEEECTTS-CCCEECTTTT
T ss_pred EeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh-c--ccCCCCCEEECCCC-cccccChhHh
Confidence 55544321 22100000 0 11256666666663 4442211111
Q ss_pred HhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 338 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 338 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
. .+++|+.|++++| .++......+. .+++|++|++++|. ++......+.. +++|++|++++|.
T Consensus 320 ~-~l~~L~~L~Ls~N-~l~~~~~~~~~---------~l~~L~~L~Ls~N~-l~~~~~~~~~~--l~~L~~L~L~~N~ 382 (455)
T 3v47_A 320 W-GLTHLLKLNLSQN-FLGSIDSRMFE---------NLDKLEVLDLSYNH-IRALGDQSFLG--LPNLKELALDTNQ 382 (455)
T ss_dssp T-TCTTCCEEECCSS-CCCEECGGGGT---------TCTTCCEEECCSSC-CCEECTTTTTT--CTTCCEEECCSSC
T ss_pred c-CcccCCEEECCCC-ccCCcChhHhc---------CcccCCEEECCCCc-ccccChhhccc--cccccEEECCCCc
Confidence 1 4566666666666 44332211121 56667777777765 55433333433 6677777777664
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=2.9e-21 Score=203.00 Aligned_cols=359 Identities=17% Similarity=0.146 Sum_probs=225.2
Q ss_pred CCccceeeeeecccccchhhHHHHHHHhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCcc
Q 011317 1 MQGSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYI 80 (488)
Q Consensus 1 ~~~l~~l~l~~~~~~~~~~~~~~~~~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 80 (488)
+.+|+.|.+..+...-..+. ..++ +|+.|++++......... ...+++|++|+++++.+
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~-----~~l~-~L~~L~Ls~n~l~~~~~~---------------l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDV-----SRCV-NLEFLDVSSNNFSTGIPF---------------LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CTTCCEEECCSSEEESCCBC-----TTCT-TCCEEECCSSCCCSCCCB---------------CTTCCSCCEEECCSSCC
T ss_pred CCCCCEEECCCCcccccCCc-----ccCC-cCCEEECcCCcCCCCCcc---------------cccCCCCCEEECcCCcC
Confidence 35688888876433211111 3445 888888875432111111 24478999999999888
Q ss_pred ChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCC
Q 011317 81 TDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCA 160 (488)
Q Consensus 81 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~ 160 (488)
.......+ ..+++|++|++++|. ++.. ++.. .+++|++|+++.+.-.. .+.. .+...++
T Consensus 236 ~~~~~~~l-~~l~~L~~L~Ls~n~---------l~~~-~~~~-~l~~L~~L~L~~n~l~~-----~ip~----~~~~~~~ 294 (768)
T 3rgz_A 236 SGDFSRAI-STCTELKLLNISSNQ---------FVGP-IPPL-PLKSLQYLSLAENKFTG-----EIPD----FLSGACD 294 (768)
T ss_dssp CSCHHHHT-TTCSSCCEEECCSSC---------CEES-CCCC-CCTTCCEEECCSSEEEE-----SCCC----CSCTTCT
T ss_pred CCcccHHH-hcCCCCCEEECCCCc---------ccCc-cCcc-ccCCCCEEECcCCccCC-----ccCH----HHHhhcC
Confidence 86655555 479999999999985 2221 1111 68899999997653210 1111 1123368
Q ss_pred CCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC-Cc
Q 011317 161 SMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GI 239 (488)
Q Consensus 161 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L 239 (488)
+|++|+++++ .+... ++..+..+++|++|+++++......+. .....+++|++|+++++. +.......+..++ +|
T Consensus 295 ~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~~L 370 (768)
T 3rgz_A 295 TLTGLDLSGN-HFYGA-VPPFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNE-FSGELPESLTNLSASL 370 (768)
T ss_dssp TCSEEECCSS-EEEEC-CCGGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSE-EEECCCTTHHHHTTTC
T ss_pred cCCEEECcCC-cCCCc-cchHHhcCCCccEEECCCCcccCcCCH-HHHhcCCCCCEEeCcCCc-cCccccHHHHhhhcCC
Confidence 9999999985 44322 122246789999999998753211111 124577899999999863 2211111233444 89
Q ss_pred CEEeccCCCCCChHHHHhhcC--CCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC---HHHHHHHhccCC
Q 011317 240 KVLDLRDCKNLGDEALRAISS--LPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT---DKCISALFDGTS 314 (488)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~ 314 (488)
+.|+++++ .+.......+.. +++|++|++++|.++......+.. +++|+.|++++|. ++ +..+..+
T Consensus 371 ~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~N~-l~~~~p~~l~~l----- 441 (768)
T 3rgz_A 371 LTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN--CSELVSLHLSFNY-LSGTIPSSLGSL----- 441 (768)
T ss_dssp SEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG--CTTCCEEECCSSE-EESCCCGGGGGC-----
T ss_pred cEEEccCC-CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc--CCCCCEEECcCCc-ccCcccHHHhcC-----
Confidence 99999986 343333334443 788999999999777544444444 8999999999875 32 2333222
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH
Q 011317 315 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 394 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 394 (488)
++|+.|+++++ .++......+. .+++|+.|++++| .++......+. .+++|++|++++|. ++....
T Consensus 442 -~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~~p~~l~---------~l~~L~~L~L~~N~-l~~~~p 507 (768)
T 3rgz_A 442 -SKLRDLKLWLN-MLEGEIPQELM-YVKTLETLILDFN-DLTGEIPSGLS---------NCTNLNWISLSNNR-LTGEIP 507 (768)
T ss_dssp -TTCCEEECCSS-CCCSCCCGGGG-GCTTCCEEECCSS-CCCSCCCGGGG---------GCTTCCEEECCSSC-CCSCCC
T ss_pred -CCCCEEECCCC-cccCcCCHHHc-CCCCceEEEecCC-cccCcCCHHHh---------cCCCCCEEEccCCc-cCCcCC
Confidence 89999999995 55432222222 5899999999999 55532222222 78999999999998 665444
Q ss_pred HHhhccCCCCccEEEecCCCCHHHHHHHHhhCCCce
Q 011317 395 RWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLN 430 (488)
Q Consensus 395 ~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 430 (488)
..+.. +++|+.|++++|.....+.......+.++
T Consensus 508 ~~~~~--l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 508 KWIGR--LENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp GGGGG--CTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred hHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 55554 89999999999974322222233445544
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=1.7e-18 Score=175.61 Aligned_cols=173 Identities=12% Similarity=0.119 Sum_probs=89.5
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHH---HhhcCCCCccEEEeCCCccchhHH-HHHHhh
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEAL---RAISSLPQLKILLLDGSDISDVGV-SYLRLT 285 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~~~-~~l~~~ 285 (488)
..++|+.|+++++ .+...+...+..+++|+.|+++++ .+..... ..+..+++|++|++++|.++.... .....
T Consensus 308 ~~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~- 384 (549)
T 2z81_A 308 LLEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL- 384 (549)
T ss_dssp HSTTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG-
T ss_pred hcccceEEEeccC-ccccCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhh-
Confidence 3456777777764 333322222335777777777775 4444332 224567777777777776665432 11122
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHc
Q 011317 286 VITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 286 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
.+++|+.|++++|. ++. +.... ..+++|++|+++++ .++.-.. ...++|+.|++++| .++.. ..
T Consensus 385 ~l~~L~~L~Ls~N~-l~~--lp~~~--~~~~~L~~L~Ls~N-~l~~l~~----~~~~~L~~L~Ls~N-~l~~~-----~~ 448 (549)
T 2z81_A 385 TLKNLTSLDISRNT-FHP--MPDSC--QWPEKMRFLNLSST-GIRVVKT----CIPQTLEVLDVSNN-NLDSF-----SL 448 (549)
T ss_dssp GCTTCCEEECTTCC-CCC--CCSCC--CCCTTCCEEECTTS-CCSCCCT----TSCTTCSEEECCSS-CCSCC-----CC
T ss_pred cCCCCCEEECCCCC-Ccc--CChhh--cccccccEEECCCC-Ccccccc----hhcCCceEEECCCC-Chhhh-----cc
Confidence 37777777777753 431 11111 11256777777764 3431100 01245666666666 44321 11
Q ss_pred ccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 366 MLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|++|++++|. ++. +.... .+++|+.|++++|.
T Consensus 449 --------~l~~L~~L~Ls~N~-l~~--ip~~~--~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 449 --------FLPRLQELYISRNK-LKT--LPDAS--LFPVLLVMKISRNQ 484 (549)
T ss_dssp --------CCTTCCEEECCSSC-CSS--CCCGG--GCTTCCEEECCSSC
T ss_pred --------cCChhcEEECCCCc-cCc--CCCcc--cCccCCEEecCCCc
Confidence 55666666666665 442 22221 25666666666664
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=175.15 Aligned_cols=133 Identities=20% Similarity=0.184 Sum_probs=67.6
Q ss_pred cCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH-HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHH
Q 011317 259 SSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTL 337 (488)
Q Consensus 259 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l 337 (488)
..+++|++|++++|.++......+. .+++|+.|++++|. ++. ..+...... +++|++|+++++ .++.......
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~-l~~l~~~~~~~~~--l~~L~~L~Ls~N-~l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQ-LKELSKIAEMTTQ--MKSLQQLDISQN-SVSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSC-CCBHHHHHHHHTT--CTTCCEEECCSS-CCBCCGGGCS
T ss_pred hhCCcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCc-cCccccchHHHhh--CCCCCEEECCCC-cCCcccccch
Confidence 3566777777777766653333333 36677777777654 442 122221222 267777777763 4432111111
Q ss_pred HhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCC-CCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 338 ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYG-SSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 338 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
...+++|+.|++++| .+++.. .. .+ ++|+.|++++|. ++... ..+. .+++|++|++++|.
T Consensus 395 ~~~l~~L~~L~Ls~N-~l~~~~----~~--------~l~~~L~~L~Ls~N~-l~~ip-~~~~--~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSN-ILTDTI----FR--------CLPPRIKVLDLHSNK-IKSIP-KQVV--KLEALQELNVASNQ 455 (520)
T ss_dssp CCCCTTCCEEECCSS-CCCGGG----GG--------SCCTTCCEEECCSSC-CCCCC-GGGG--GCTTCCEEECCSSC
T ss_pred hccCccCCEEECcCC-CCCcch----hh--------hhcccCCEEECCCCc-ccccc-hhhh--cCCCCCEEECCCCc
Confidence 124566777777766 444211 11 22 466666666665 55211 1122 26666666666664
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=3.4e-20 Score=190.34 Aligned_cols=302 Identities=15% Similarity=0.117 Sum_probs=167.0
Q ss_pred CCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCC--c----------------------cccccChHHHHhhh
Q 011317 68 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEP--R----------------------ITFDLTNSGLQQIN 123 (488)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~----------------------~~~~~~~~~l~~l~ 123 (488)
.+|++|+++++.+...........+++|+.+.+........ . ....++. ..+.+.
T Consensus 204 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~-~~~~~~ 282 (606)
T 3vq2_A 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD-DIVKFH 282 (606)
T ss_dssp CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCG-GGGSCG
T ss_pred ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccc-cccccc
Confidence 47999999998887666666666888888877742210000 0 0001122 122255
Q ss_pred cCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHH
Q 011317 124 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLV 203 (488)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 203 (488)
.+++|+.|+++++. ...+. ....+++|+.|++++| .+.. ++.+ .+++|++|+++++......
T Consensus 283 ~l~~L~~L~l~~~~------~~~l~------~l~~~~~L~~L~l~~n-~l~~--lp~~--~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 283 CLANVSAMSLAGVS------IKYLE------DVPKHFKWQSLSIIRC-QLKQ--FPTL--DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp GGTTCSEEEEESCC------CCCCC------CCCTTCCCSEEEEESC-CCSS--CCCC--CCSSCCEEEEESCSSCEEC-
T ss_pred cCCCCCEEEecCcc------chhhh------hccccccCCEEEcccc-cCcc--cccC--CCCccceeeccCCcCccch-
Confidence 67788888886543 12222 1134677888888875 3322 2232 5778888888776433321
Q ss_pred HHHHHhcCCCCCEEEecCCCCCCHHH--HHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHH-H
Q 011317 204 FHDISATSLSLTHVCLRWCNLLTNHA--IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGV-S 280 (488)
Q Consensus 204 ~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~ 280 (488)
....+++|++|+++++ .+.... ...+..+++|+.|+++++. +.... ..+..+++|+.|++++|.+..... .
T Consensus 345 ---~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 345 ---KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS-ANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp ---CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC-CCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred ---hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEeECCCCc-cccch-hhccCCCCCCeeECCCCccCCccChh
Confidence 1235677888888774 332110 1234567778888887753 33222 345567777777777776554332 2
Q ss_pred HHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHH
Q 011317 281 YLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSV 360 (488)
Q Consensus 281 ~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~ 360 (488)
.+. .+++|+.|++++|. ++......+ . .+++|++|+++++ .+++..+......+++|+.|++++| .++....
T Consensus 419 ~~~--~l~~L~~L~l~~n~-l~~~~~~~~-~--~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 490 (606)
T 3vq2_A 419 AFL--SLEKLLYLDISYTN-TKIDFDGIF-L--GLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISW 490 (606)
T ss_dssp TTT--TCTTCCEEECTTSC-CEECCTTTT-T--TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECT
T ss_pred hhh--ccccCCEEECcCCC-CCccchhhh-c--CCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccCh
Confidence 222 36777777777764 221100011 1 1267777777774 4433211111224677777777777 5543222
Q ss_pred HHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 361 IALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 361 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
..+. .+++|++|++++|. ++......+.. +++|+.|++++|.
T Consensus 491 ~~~~---------~l~~L~~L~Ls~N~-l~~~~~~~~~~--l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 491 GVFD---------TLHRLQLLNMSHNN-LLFLDSSHYNQ--LYSLSTLDCSFNR 532 (606)
T ss_dssp TTTT---------TCTTCCEEECCSSC-CSCEEGGGTTT--CTTCCEEECTTSC
T ss_pred hhhc---------ccccCCEEECCCCc-CCCcCHHHccC--CCcCCEEECCCCc
Confidence 2222 56777777777776 55543334433 6777777777775
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=2.5e-20 Score=190.00 Aligned_cols=182 Identities=16% Similarity=0.133 Sum_probs=102.7
Q ss_pred CCCCcCEEeccCCCCCChHH--HHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc
Q 011317 235 SNTGIKVLDLRDCKNLGDEA--LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 312 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 312 (488)
.+++|+.|+++++ .+.... ...+..+++|++|++++|.+...... +. .+++|+.|++++|. ++.........
T Consensus 345 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~~~- 418 (570)
T 2z63_A 345 DLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL--GLEQLEHLDFQHSN-LKQMSEFSVFL- 418 (570)
T ss_dssp BCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE--TCTTCCEEECTTSE-EESCTTSCTTT-
T ss_pred cCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCcccccccc-cc--ccCCCCEEEccCCc-cccccchhhhh-
Confidence 4677888888775 343322 34456788899999988866543322 22 47888888888764 22110000111
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 313 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 313 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
.+++|++|++++| .++...... ...+++|+.|++++| .+++..+..... .+++|++|++++|. ++..
T Consensus 419 -~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~p~~~~--------~l~~L~~L~l~~n~-l~~~ 485 (570)
T 2z63_A 419 -SLRNLIYLDISHT-HTRVAFNGI-FNGLSSLEVLKMAGN-SFQENFLPDIFT--------ELRNLTFLDLSQCQ-LEQL 485 (570)
T ss_dssp -TCTTCCEEECTTS-CCEECCTTT-TTTCTTCCEEECTTC-EEGGGEECSCCT--------TCTTCCEEECTTSC-CCEE
T ss_pred -cCCCCCEEeCcCC-cccccchhh-hhcCCcCcEEECcCC-cCccccchhhhh--------cccCCCEEECCCCc-cccC
Confidence 2278888888885 443221111 125788888888888 443211111111 67788888888886 6654
Q ss_pred HHHHhhccCCCCccEEEecCCCCHHHHHHHHhhCCCce-eeccccc
Q 011317 393 AFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLN-VACRGEE 437 (488)
Q Consensus 393 ~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~ 437 (488)
....+.. +++|++|++++|.-...........+.++ +...+++
T Consensus 486 ~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 486 SPTAFNS--LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTTTTT--CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Chhhhhc--ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 3344443 78888888888753222222223344443 4444443
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.75 E-value=1.3e-19 Score=180.25 Aligned_cols=304 Identities=16% Similarity=0.115 Sum_probs=200.9
Q ss_pred HHhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCC
Q 011317 26 ALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPL 105 (488)
Q Consensus 26 ~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 105 (488)
..+|..++.|++++..-..... .....+++|++|+|+.+.+.......+ ..+++|++|+|++|.
T Consensus 28 ~~~~~~l~~L~L~~n~l~~~~~--------------~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~- 91 (477)
T 2id5_A 28 EGIPTETRLLDLGKNRIKTLNQ--------------DEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNR- 91 (477)
T ss_dssp SCCCTTCSEEECCSSCCCEECT--------------TTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC-
T ss_pred CCCCCCCcEEECCCCccceECH--------------hHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCc-
Confidence 3456678888877432111100 013447899999999887776433333 378999999999984
Q ss_pred CCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhC
Q 011317 106 IEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSC 185 (488)
Q Consensus 106 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 185 (488)
++......+..+++|++|+++.+. ...+... ....+++|+.|+++++ .+....... +..+
T Consensus 92 --------l~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l 151 (477)
T 2id5_A 92 --------LKLIPLGVFTGLSNLTKLDISENK------IVILLDY----MFQDLYNLKSLEVGDN-DLVYISHRA-FSGL 151 (477)
T ss_dssp --------CCSCCTTSSTTCTTCCEEECTTSC------CCEECTT----TTTTCTTCCEEEECCT-TCCEECTTS-STTC
T ss_pred --------CCccCcccccCCCCCCEEECCCCc------cccCChh----HccccccCCEEECCCC-ccceeChhh-ccCC
Confidence 444333446789999999997643 2222111 1246899999999984 555432222 3568
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCcc
Q 011317 186 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 265 (488)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 265 (488)
++|++|+++++.. +... ......+++|+.|+++++ .+.......+..+++|+.|+++++........ ......+|+
T Consensus 152 ~~L~~L~l~~n~l-~~~~-~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~ 227 (477)
T 2id5_A 152 NSLEQLTLEKCNL-TSIP-TEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-NCLYGLNLT 227 (477)
T ss_dssp TTCCEEEEESCCC-SSCC-HHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECT-TTTTTCCCS
T ss_pred CCCCEEECCCCcC-cccC-hhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCc-ccccCcccc
Confidence 9999999998753 2222 123457889999999985 44333333456889999999998755443332 223455999
Q ss_pred EEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCC
Q 011317 266 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPIS 345 (488)
Q Consensus 266 ~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 345 (488)
+|++++|.++......+.. +++|+.|+++++. ++......+ ..+++|++|+++++ .++......+. .+++|+
T Consensus 228 ~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~-l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~ 299 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVRH--LVYLRFLNLSYNP-ISTIEGSML---HELLRLQEIQLVGG-QLAVVEPYAFR-GLNYLR 299 (477)
T ss_dssp EEEEESSCCCSCCHHHHTT--CTTCCEEECCSSC-CCEECTTSC---TTCTTCCEEECCSS-CCSEECTTTBT-TCTTCC
T ss_pred EEECcCCcccccCHHHhcC--ccccCeeECCCCc-CCccChhhc---cccccCCEEECCCC-ccceECHHHhc-CcccCC
Confidence 9999999888666555555 9999999999864 542111111 12389999999994 66643222222 689999
Q ss_pred eEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 346 ELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 346 ~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
.|++++| .++......+. .+++|+.|++++|+
T Consensus 300 ~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 300 VLNVSGN-QLTTLEESVFH---------SVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSS-CCSCCCGGGBS---------CGGGCCEEECCSSC
T ss_pred EEECCCC-cCceeCHhHcC---------CCcccCEEEccCCC
Confidence 9999999 66542221111 67899999999988
No 27
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.74 E-value=2.9e-20 Score=190.86 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=52.6
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 395 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 395 (488)
++|++|++++| .++......+ ..+++|+.|++++| .+++..+.... ..+++|++|++++|. ++.....
T Consensus 424 ~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~--------~~l~~L~~L~Ls~n~-l~~~~~~ 491 (606)
T 3vq2_A 424 EKLLYLDISYT-NTKIDFDGIF-LGLTSLNTLKMAGN-SFKDNTLSNVF--------ANTTNLTFLDLSKCQ-LEQISWG 491 (606)
T ss_dssp TTCCEEECTTS-CCEECCTTTT-TTCTTCCEEECTTC-EEGGGEECSCC--------TTCTTCCEEECTTSC-CCEECTT
T ss_pred ccCCEEECcCC-CCCccchhhh-cCCCCCCEEECCCC-cCCCcchHHhh--------ccCCCCCEEECCCCc-CCccChh
Confidence 66777777764 3332111111 24677777777777 44331111111 178899999999997 7654444
Q ss_pred HhhccCCCCccEEEecCCCC
Q 011317 396 WLKKPYFPRLRWLGVTGSVN 415 (488)
Q Consensus 396 ~l~~~~~~~L~~L~l~~~~~ 415 (488)
.+.. +++|++|++++|..
T Consensus 492 ~~~~--l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 492 VFDT--LHRLQLLNMSHNNL 509 (606)
T ss_dssp TTTT--CTTCCEEECCSSCC
T ss_pred hhcc--cccCCEEECCCCcC
Confidence 4543 89999999999964
No 28
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=3.4e-18 Score=173.30 Aligned_cols=85 Identities=13% Similarity=0.100 Sum_probs=51.2
Q ss_pred CCeeEEecCCCCCCCHHHHHHH--HhcCCCCCeEeecCCCCCCHHHH-HHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTL--ATCRVPISELRVRQCPLIGDTSV-IALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~l~~~~~-~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
++|++|++++ +.++....... ...+++|+.|++++| .++.... ..... .+++|++|++++|. ++.
T Consensus 334 ~~L~~L~Ls~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~--------~l~~L~~L~Ls~N~-l~~- 401 (549)
T 2z81_A 334 KSLEFLDLSE-NLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILL--------TLKNLTSLDISRNT-FHP- 401 (549)
T ss_dssp TTCCEEECCS-SCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGG--------GCTTCCEEECTTCC-CCC-
T ss_pred ccccEEEccC-CccccccccchhhhhccccCcEEEccCC-cccccccchhhhh--------cCCCCCEEECCCCC-Ccc-
Confidence 7788888877 35665433221 225677888888877 5554332 12222 67788888888886 552
Q ss_pred HHHHhhccCCCCccEEEecCCC
Q 011317 393 AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 393 ~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+..... .+++|++|++++|.
T Consensus 402 -lp~~~~-~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 402 -MPDSCQ-WPEKMRFLNLSSTG 421 (549)
T ss_dssp -CCSCCC-CCTTCCEEECTTSC
T ss_pred -CChhhc-ccccccEEECCCCC
Confidence 111111 36788888888775
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=4e-18 Score=164.96 Aligned_cols=298 Identities=16% Similarity=0.117 Sum_probs=188.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 131 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNA---------IRYLPPHVFQNVPLLTVLVLERND------LSS 131 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------CCC
T ss_pred cccCcEEECCCCcccccChhhc-cCCCCcCEEECCCCC---------CCcCCHHHhcCCCCCCEEECCCCc------cCc
Confidence 6788888888777665333333 368888899988874 444333456778888888887543 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... ++..+++|++|+++++ .+..... ..+..+++|++|+++++.. +..+ ...+++|+.|+++++ .+.
T Consensus 132 l~~~----~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~----~~~l~~L~~L~l~~n-~l~ 199 (390)
T 3o6n_A 132 LPRG----IFHNTPKLTTLSMSNN-NLERIED-DTFQATTSLQNLQLSSNRL-THVD----LSLIPSLFHANVSYN-LLS 199 (390)
T ss_dssp CCTT----TTTTCTTCCEEECCSS-CCCBCCT-TTTSSCTTCCEEECCSSCC-SBCC----GGGCTTCSEEECCSS-CCS
T ss_pred CCHH----HhcCCCCCcEEECCCC-ccCccCh-hhccCCCCCCEEECCCCcC-Cccc----cccccccceeecccc-ccc
Confidence 2221 1245788899998884 5543311 2235678899999887653 2221 345678899988874 333
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
.+...++|+.|+++++ .+..... ...++|+.|++++|.+++.. .+. .+++|+.|+++++. ++....
T Consensus 200 -----~~~~~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~Ls~n~-l~~~~~ 265 (390)
T 3o6n_A 200 -----TLAIPIAVEELDASHN-SINVVRG---PVNVELTILKLQHNNLTDTA--WLL--NYPGLVEVDLSYNE-LEKIMY 265 (390)
T ss_dssp -----EEECCSSCSEEECCSS-CCCEEEC---CCCSSCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSSC-CCEEES
T ss_pred -----ccCCCCcceEEECCCC-eeeeccc---cccccccEEECCCCCCcccH--HHc--CCCCccEEECCCCc-CCCcCh
Confidence 2345678899999885 3433211 24578999999998777642 233 48899999998864 442211
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
..+ ..+++|++|+++++ .++.... ....+++|+.|++++| .++... ..+. .+++|++|++++|
T Consensus 266 ~~~---~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~~~-~~~~---------~l~~L~~L~L~~N 328 (390)
T 3o6n_A 266 HPF---VKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLHVE-RNQP---------QFDRLENLYLDHN 328 (390)
T ss_dssp GGG---TTCSSCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCCCG-GGHH---------HHTTCSEEECCSS
T ss_pred hHc---cccccCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCC-cceecC-cccc---------ccCcCCEEECCCC
Confidence 111 12288999999984 5553211 1135789999999998 554221 1122 4678999999999
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCCC-HHHHHHHHhhCCCc
Q 011317 387 GGITQLAFRWLKKPYFPRLRWLGVTGSVN-RDILDALARSRPFL 429 (488)
Q Consensus 387 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~l 429 (488)
. ++... +. .+++|+.|++++|+- -.....+....+..
T Consensus 329 ~-i~~~~---~~--~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~ 366 (390)
T 3o6n_A 329 S-IVTLK---LS--THHTLKNLTLSHNDWDCNSLRALFRNVARP 366 (390)
T ss_dssp C-CCCCC---CC--TTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred c-cceeC---ch--hhccCCEEEcCCCCccchhHHHHHHHHHhh
Confidence 8 65432 22 488999999999873 34444454444443
No 30
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.72 E-value=8.9e-19 Score=182.23 Aligned_cols=309 Identities=16% Similarity=0.125 Sum_probs=140.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+++.+.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 159 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNG---------LSSTKLGTQVQLENLQELLLSNNK------IQA 159 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTT-TTCTTCCEEECCSSC---------CSCCCCCSSSCCTTCCEEECCSSC------CCC
T ss_pred CCCCCEEECCCCccCccChhHc-cccCCCCEEECCCCc---------ccccCchhhcccccCCEEEccCCc------ccc
Confidence 5666666666554443211112 246666666666653 222222334556666666665331 112
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHh--cCCCCCEEEecCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISA--TSLSLTHVCLRWCNL 224 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 224 (488)
+....+. ...+++|+.|+++++ .+..... ..+..+++|+.|.+.++. +.......+.. ..++|++|+++++ .
T Consensus 160 ~~~~~~~--~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~l~~~~L~~L~L~~n-~ 233 (680)
T 1ziw_A 160 LKSEELD--IFANSSLKKLELSSN-QIKEFSP-GCFHAIGRLFGLFLNNVQ-LGPSLTEKLCLELANTSIRNLSLSNS-Q 233 (680)
T ss_dssp BCHHHHG--GGTTCEESEEECTTC-CCCCBCT-TGGGGSSEECEEECTTCC-CHHHHHHHHHHHHTTSCCCEEECTTS-C
T ss_pred cCHHHhh--ccccccccEEECCCC-cccccCh-hhhhhhhhhhhhhccccc-cChhhHHHHHHHhhhccccEEEccCC-c
Confidence 2111110 012456666666663 3332211 112345555555555443 22222222211 2356677776664 2
Q ss_pred CCHHHHHHhhCC--CCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC
Q 011317 225 LTNHAIKSLASN--TGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT 302 (488)
Q Consensus 225 ~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~ 302 (488)
+.......+..+ ++|+.|+++++ .+.......+..+++|++|++++|.+.......+.. +++|+.|+++++..-.
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG--LFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT--CTTCCEEECTTCBCCC
T ss_pred ccccChhHhhccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhhhcC--CCCccEEeccchhhhc
Confidence 222111122222 34777777664 344444445566677777777776555433222322 5666666665532111
Q ss_pred HHHHHHHh-----ccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCC------------------------
Q 011317 303 DKCISALF-----DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP------------------------ 353 (488)
Q Consensus 303 ~~~~~~l~-----~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~------------------------ 353 (488)
......+. .-..+++|++|+++++ .++......+ ..+++|+.|++++|.
T Consensus 311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 311 SISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp ------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred ccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHh-ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 11111110 0011255666666553 3332111111 135555555555441
Q ss_pred ---CCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH-HHHHhhccCCCCccEEEecCCC
Q 011317 354 ---LIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL-AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 354 ---~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~-~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.++......+ ..+++|+.|++++|. ++.. ....+. .+++|+.|++++|.
T Consensus 389 ~~n~l~~~~~~~~---------~~l~~L~~L~L~~N~-l~~~~~~~~~~--~l~~L~~L~Ls~n~ 441 (680)
T 1ziw_A 389 TKNKISKIESDAF---------SWLGHLEVLDLGLNE-IGQELTGQEWR--GLENIFEIYLSYNK 441 (680)
T ss_dssp TTSCCCEECTTTT---------TTCTTCCEEECCSSC-CEEECCSGGGT--TCTTCCEEECCSCS
T ss_pred CCCCCCeEChhhh---------hCCCCCCEEeCCCCc-CccccCccccc--CcccccEEecCCCC
Confidence 2221111111 157788888888876 4321 112333 37788888888775
No 31
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.72 E-value=6.5e-20 Score=188.39 Aligned_cols=157 Identities=13% Similarity=0.077 Sum_probs=70.5
Q ss_pred CcCEEeccCCCCCChHHHHhhc-------CCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHh
Q 011317 238 GIKVLDLRDCKNLGDEALRAIS-------SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALF 310 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 310 (488)
+|+.|+++++ .+.......+. .+++|++|++++|.++......+. .+++|+.|+++++. ++.-... ..
T Consensus 403 ~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~--~l~~L~~L~Ls~N~-l~~i~~~-~~ 477 (636)
T 4eco_A 403 VMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS--TGSPLSSINLMGNM-LTEIPKN-SL 477 (636)
T ss_dssp CEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH--TTCCCSEEECCSSC-CSBCCSS-SS
T ss_pred ccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc--cCCCCCEEECCCCC-CCCcCHH-Hh
Confidence 5666666553 33332222333 445666666666655532222222 26666667666643 3310000 00
Q ss_pred ccC-----CCCCeeEEecCCCCCCCHHHHHHHH-hcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 311 DGT-----SKLQLQELDLSNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 311 ~~~-----~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
... .+++|++|+++++ .++.- ...+. ..+++|+.|++++| .++. +..-.. .+++|+.|+++
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~~~l~~L~~L~Ls~N-~l~~--ip~~~~--------~l~~L~~L~Ls 544 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFN-KLTKL-SDDFRATTLPYLVGIDLSYN-SFSK--FPTQPL--------NSSTLKGFGIR 544 (636)
T ss_dssp EETTEECTTGGGCCEEECCSS-CCCBC-CGGGSTTTCTTCCEEECCSS-CCSS--CCCGGG--------GCSSCCEEECC
T ss_pred ccccccccccCCccEEECcCC-cCCcc-ChhhhhccCCCcCEEECCCC-CCCC--cChhhh--------cCCCCCEEECC
Confidence 000 0016666777663 44411 11111 14666777777666 4442 111111 45666666664
Q ss_pred CCCC-----CCHHHHHHhhccCCCCccEEEecCCC
Q 011317 385 NCGG-----ITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 385 ~~~~-----i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+|+. +.......+.. +++|+.|++++|.
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITL--CPSLTQLQIGSND 577 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSC
T ss_pred CCcccccCcccccChHHHhc--CCCCCEEECCCCc
Confidence 3221 22222223332 5666666666664
No 32
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=2.2e-16 Score=150.93 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=69.7
Q ss_pred CCcCEEeccCCCCCChHHHHh----hcCCC-CccEEEeCCCccchhHHHHHHh--hcC-CCccEEecCCCCCCCHHHHHH
Q 011317 237 TGIKVLDLRDCKNLGDEALRA----ISSLP-QLKILLLDGSDISDVGVSYLRL--TVI-TSLVKLSLRGCKRLTDKCISA 308 (488)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~~----l~~~~-~L~~L~l~~~~i~~~~~~~l~~--~~~-~~L~~L~l~~~~~l~~~~~~~ 308 (488)
++|++|+++++ .+++.+... +..++ +|++|++++|.+++.+...+.. ..+ ++|+.|++++|. +++.+...
T Consensus 138 ~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~ 215 (362)
T 3goz_A 138 ASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAE 215 (362)
T ss_dssp TTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHH
T ss_pred CceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHH
Confidence 45555555553 333322222 22333 5666666666555444332222 013 356666666543 44322221
Q ss_pred Hhc---cCCCCCeeEEecCCCCCCCHHHH---HHHHhcCCCCCeEeecCCC--CCCHHHHHHHHcccccCCCCCCCCccE
Q 011317 309 LFD---GTSKLQLQELDLSNLPHLSDNGI---LTLATCRVPISELRVRQCP--LIGDTSVIALASMLVDDDRWYGSSIRL 380 (488)
Q Consensus 309 l~~---~~~~~~L~~L~l~~~~~l~~~~~---~~l~~~~~~L~~L~l~~~~--~l~~~~~~~l~~~~~~~~~~~~~~L~~ 380 (488)
+.. .. .++|++|++++ +.+++.+. ..+...+++|+.|++++|. .+++.++..+..... .+++|+.
T Consensus 216 l~~~l~~~-~~~L~~L~Ls~-N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~-----~l~~L~~ 288 (362)
T 3goz_A 216 LAYIFSSI-PNHVVSLNLCL-NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP-----NIQKIIL 288 (362)
T ss_dssp HHHHHHHS-CTTCCEEECCS-SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST-----TCCEEEE
T ss_pred HHHHHhcC-CCCceEEECcC-CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc-----cCCceEE
Confidence 111 10 04666666666 35554333 2223345667777776662 255666666554333 5566666
Q ss_pred EeccCCCCCCH
Q 011317 381 LDLYNCGGITQ 391 (488)
Q Consensus 381 L~l~~~~~i~~ 391 (488)
|++++|. +.+
T Consensus 289 LdL~~N~-l~~ 298 (362)
T 3goz_A 289 VDKNGKE-IHP 298 (362)
T ss_dssp ECTTSCB-CCG
T ss_pred EecCCCc-CCC
Confidence 6776666 544
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=2.1e-17 Score=167.82 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=53.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+++++.+.......+ ..+++|++|++++|. ++. ++.. .+++|++|+++++. ...
T Consensus 75 l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~---------l~~--lp~~-~l~~L~~L~Ls~N~------l~~ 135 (562)
T 3a79_B 75 LSELRVLRLSHNRIRSLDFHVF-LFNQDLEYLDVSHNR---------LQN--ISCC-PMASLRHLDLSFND------FDV 135 (562)
T ss_dssp CTTCCEEECCSCCCCEECTTTT-TTCTTCCEEECTTSC---------CCE--ECSC-CCTTCSEEECCSSC------CSB
T ss_pred CCCccEEECCCCCCCcCCHHHh-CCCCCCCEEECCCCc---------CCc--cCcc-ccccCCEEECCCCC------ccc
Confidence 5667777776665554322222 256667777776663 221 1111 56677777776432 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCC--ceEEecCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNL--YKLRVSHG 196 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~ 196 (488)
+. .......+++|++|++++ +.+....+ ..+++| +.|+++++
T Consensus 136 l~---~p~~~~~l~~L~~L~L~~-n~l~~~~~----~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 136 LP---VCKEFGNLTKLTFLGLSA-AKFRQLDL----LPVAHLHLSCILLDLV 179 (562)
T ss_dssp CC---CCGGGGGCTTCCEEEEEC-SBCCTTTT----GGGTTSCEEEEEEEES
T ss_pred cC---chHhhcccCcccEEecCC-CccccCch----hhhhhceeeEEEeecc
Confidence 11 101124577788888877 45554322 234444 77766654
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=1.8e-18 Score=179.95 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=78.7
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCC--CCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSL--PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 313 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 313 (488)
.++|+.|+++++ .+.......+..+ ++|++|++++|.+.......+.. +++|+.|+++++. ++......+ .
T Consensus 221 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~n~-l~~~~~~~~-~-- 293 (680)
T 1ziw_A 221 NTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW--LPQLEYFFLEYNN-IQHLFSHSL-H-- 293 (680)
T ss_dssp TSCCCEEECTTS-CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSCC-BSEECTTTT-T--
T ss_pred hccccEEEccCC-cccccChhHhhccCcCCCCEEECCCCCcCccCcccccC--cccccEeeCCCCc-cCccChhhh-c--
Confidence 356666666664 3433333334433 34777777777665443333333 6777777777653 331110011 1
Q ss_pred CCCCeeEEecCCCCCCCHHHHHH-------HHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 314 SKLQLQELDLSNLPHLSDNGILT-------LATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~-------l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
.+++|++|+++++.......... ....+++|+.|++++| .++......+. .+++|++|++++|
T Consensus 294 ~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFT---------GLINLKYLSLSNS 363 (680)
T ss_dssp TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTT---------TCTTCCEEECTTC
T ss_pred CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChhHhc---------cccCCcEEECCCC
Confidence 12677777776532111000000 0124677777777777 44432111111 5677888887776
Q ss_pred CCCCHH--HHHHhhccCCCCccEEEecCCC
Q 011317 387 GGITQL--AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 387 ~~i~~~--~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
. ++.. ....+.....++|+.|++++|.
T Consensus 364 ~-~~~~~l~~~~f~~~~~~~L~~L~L~~n~ 392 (680)
T 1ziw_A 364 F-TSLRTLTNETFVSLAHSPLHILNLTKNK 392 (680)
T ss_dssp B-SCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred c-hhhhhcchhhhcccccCcCceEECCCCC
Confidence 4 2111 0111111113578888887775
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.70 E-value=2.1e-18 Score=166.87 Aligned_cols=287 Identities=16% Similarity=0.115 Sum_probs=196.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++++.|++..+.++..... +...+++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 44 l~~l~~l~l~~~~l~~l~~~-~~~~l~~L~~L~L~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~~ 107 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDLQ---------IEEIDTYAFAYAHTIQKLYMGFNA------IRY 107 (390)
T ss_dssp GCCCSEEEEESCEESEECTH-HHHHCCCCSEEECTTSC---------CCEECTTTTTTCTTCCEEECCSSC------CCC
T ss_pred cCCceEEEecCCchhhCChh-HhcccccCcEEECCCCc---------ccccChhhccCCCCcCEEECCCCC------CCc
Confidence 68999999998766653322 23479999999999984 554444467889999999997643 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... ....+++|++|+++++ .+... ...++..+++|++|+++++.. .... ......+++|++|+++++ .+.
T Consensus 108 ~~~~----~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~~L~l~~n-~l~ 178 (390)
T 3o6n_A 108 LPPH----VFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNNL-ERIE-DDTFQATTSLQNLQLSSN-RLT 178 (390)
T ss_dssp CCTT----TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCC-CBCC-TTTTSSCTTCCEEECCSS-CCS
T ss_pred CCHH----HhcCCCCCCEEECCCC-ccCcC-CHHHhcCCCCCcEEECCCCcc-CccC-hhhccCCCCCCEEECCCC-cCC
Confidence 2221 1245899999999994 66533 223345689999999998753 2111 112356789999999985 444
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
.. .+..+++|+.|+++++ .+. .+...++|++|++++|.+..... ...++|+.|+++++. ++..
T Consensus 179 ~~---~~~~l~~L~~L~l~~n-~l~-----~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~-l~~~-- 241 (390)
T 3o6n_A 179 HV---DLSLIPSLFHANVSYN-LLS-----TLAIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNN-LTDT-- 241 (390)
T ss_dssp BC---CGGGCTTCSEEECCSS-CCS-----EEECCSSCSEEECCSSCCCEEEC-----CCCSSCCEEECCSSC-CCCC--
T ss_pred cc---ccccccccceeecccc-ccc-----ccCCCCcceEEECCCCeeeeccc-----cccccccEEECCCCC-Cccc--
Confidence 32 2457899999999985 333 23456789999999997765422 136789999999975 4432
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
..+ . .+++|++|+++++ .++......+. .+++|+.|++++| .++... .... .+++|++|++++|
T Consensus 242 ~~l-~--~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~--~~~~--------~l~~L~~L~L~~n 305 (390)
T 3o6n_A 242 AWL-L--NYPGLVEVDLSYN-ELEKIMYHPFV-KMQRLERLYISNN-RLVALN--LYGQ--------PIPTLKVLDLSHN 305 (390)
T ss_dssp GGG-G--GCTTCSEEECCSS-CCCEEESGGGT-TCSSCCEEECCSS-CCCEEE--CSSS--------CCTTCCEEECCSS
T ss_pred HHH-c--CCCCccEEECCCC-cCCCcChhHcc-ccccCCEEECCCC-cCcccC--cccC--------CCCCCCEEECCCC
Confidence 111 2 2289999999994 66643222222 5899999999999 655421 1111 6899999999999
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCCC
Q 011317 387 GGITQLAFRWLKKPYFPRLRWLGVTGSVN 415 (488)
Q Consensus 387 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~~ 415 (488)
. ++... ..+. .+++|+.|++++|..
T Consensus 306 ~-l~~~~-~~~~--~l~~L~~L~L~~N~i 330 (390)
T 3o6n_A 306 H-LLHVE-RNQP--QFDRLENLYLDHNSI 330 (390)
T ss_dssp C-CCCCG-GGHH--HHTTCSEEECCSSCC
T ss_pred c-ceecC-cccc--ccCcCCEEECCCCcc
Confidence 7 66422 1233 378999999999963
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.70 E-value=2.3e-19 Score=182.87 Aligned_cols=332 Identities=16% Similarity=0.122 Sum_probs=187.4
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..+++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++.+. .
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l 112 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNP---------IQSLALGAFSGLSSLQKLVAVETN------L 112 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCC---------CCEECTTTTTTCTTCCEEECTTSC------C
T ss_pred hCCCCceEEECCCCcCCccCcccc-cCchhCCEEeCcCCc---------CCccCHhhhcCccccccccccccc------c
Confidence 447899999999877665333333 368999999999984 444344567889999999997543 2
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCC--CHHHHHHHHhc------------
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQL--TDLVFHDISAT------------ 210 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~------------ 210 (488)
..+.... ...+++|++|+++++ .+....++..+..+++|++|+++++... ....+..+...
T Consensus 113 ~~l~~~~----~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 113 ASLENFP----IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp CCSTTCS----CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred ccCCCcc----ccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 2222211 246899999999985 5443212222467899999999986421 11111111110
Q ss_pred -----------CCCCCEEEecCCCCCC-HH--------------------------------------------------
Q 011317 211 -----------SLSLTHVCLRWCNLLT-NH-------------------------------------------------- 228 (488)
Q Consensus 211 -----------~~~L~~L~l~~~~~~~-~~-------------------------------------------------- 228 (488)
..+|++|+++++..-. ..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 0023333333210000 00
Q ss_pred ------HHHHhhCCCCcCEEeccCCC---------------------CCChHHHH-------------------hhcCCC
Q 011317 229 ------AIKSLASNTGIKVLDLRDCK---------------------NLGDEALR-------------------AISSLP 262 (488)
Q Consensus 229 ------~~~~l~~~~~L~~L~l~~~~---------------------~~~~~~~~-------------------~l~~~~ 262 (488)
....+..+++|+.|+++++. .+...... ....++
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 00011123444444444321 01000000 003578
Q ss_pred CccEEEeCCCccchhH--HHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhc
Q 011317 263 QLKILLLDGSDISDVG--VSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATC 340 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~--~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 340 (488)
+|++|++++|.++... ...+.. +++|+.|++++|. ++..... .. .+++|++|+++++ .++..........
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~--~~~L~~L~l~~n~-l~~~~~~--~~--~l~~L~~L~l~~n-~l~~~~~~~~~~~ 419 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFNG-VITMSSN--FL--GLEQLEHLDFQHS-NLKQMSEFSVFLS 419 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHT--CSCCCEEECCSCS-EEEEEEE--EE--TCTTCCEEECTTS-EEESCTTSCTTTT
T ss_pred CCCEEeCcCCccCccccccccccc--cCccCEEECCCCc-ccccccc--cc--ccCCCCEEEccCC-ccccccchhhhhc
Confidence 8999999999877543 233444 8999999999975 3311000 12 2389999999985 4432211111236
Q ss_pred CCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH-HHhhccCCCCccEEEecCCCCHHHH
Q 011317 341 RVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF-RWLKKPYFPRLRWLGVTGSVNRDIL 419 (488)
Q Consensus 341 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~-~~l~~~~~~~L~~L~l~~~~~~~~~ 419 (488)
+++|+.|++++| .++......+. .+++|++|++++|. +++..+ ..+. .+++|+.|++++|......
T Consensus 420 l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~p~~~~--~l~~L~~L~l~~n~l~~~~ 486 (570)
T 2z63_A 420 LRNLIYLDISHT-HTRVAFNGIFN---------GLSSLEVLKMAGNS-FQENFLPDIFT--ELRNLTFLDLSQCQLEQLS 486 (570)
T ss_dssp CTTCCEEECTTS-CCEECCTTTTT---------TCTTCCEEECTTCE-EGGGEECSCCT--TCTTCCEEECTTSCCCEEC
T ss_pred CCCCCEEeCcCC-cccccchhhhh---------cCCcCcEEECcCCc-Cccccchhhhh--cccCCCEEECCCCccccCC
Confidence 899999999999 44432211121 68999999999997 543212 2233 4899999999999643332
Q ss_pred HHHHhhCCCce-eecccccc
Q 011317 420 DALARSRPFLN-VACRGEEL 438 (488)
Q Consensus 420 ~~~~~~~~~l~-~~~~~~~~ 438 (488)
.......+.++ +...++.+
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCC
T ss_pred hhhhhcccCCCEEeCCCCcC
Confidence 22223445554 44444433
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.1e-17 Score=168.74 Aligned_cols=191 Identities=16% Similarity=0.153 Sum_probs=79.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+++++.+.......+ ..+++|++|+|++|. ++......++.+++|++|+++++. ...
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 137 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNA---------IRYLPPHVFQNVPLLTVLVLERND------LSS 137 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------CCC
T ss_pred CCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCCc---------CCCCCHHHHcCCCCCCEEEeeCCC------CCC
Confidence 4555555555544443222222 245555555555552 332222234455555555554332 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... ++..+++|+.|+++++ .+.... ...+..+++|++|+++++.. ...+ ...+++|+.|+++++ .+.
T Consensus 138 l~~~----~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l-~~~~----~~~l~~L~~L~l~~n-~l~ 205 (597)
T 3oja_B 138 LPRG----IFHNTPKLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNRL-THVD----LSLIPSLFHANVSYN-LLS 205 (597)
T ss_dssp CCTT----TTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECTTSCC-SBCC----GGGCTTCSEEECCSS-CCS
T ss_pred CCHH----HhccCCCCCEEEeeCC-cCCCCC-hhhhhcCCcCcEEECcCCCC-CCcC----hhhhhhhhhhhcccC-ccc
Confidence 1111 1123555555555553 333221 11123455555555555431 1111 223455555555553 222
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
.+...++|+.|+++++ .+..... ...++|+.|++++|.++.. ..+. .+++|+.|++++|
T Consensus 206 -----~l~~~~~L~~L~ls~n-~l~~~~~---~~~~~L~~L~L~~n~l~~~--~~l~--~l~~L~~L~Ls~N 264 (597)
T 3oja_B 206 -----TLAIPIAVEELDASHN-SINVVRG---PVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSYN 264 (597)
T ss_dssp -----EEECCTTCSEEECCSS-CCCEEEC---SCCSCCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSS
T ss_pred -----cccCCchhheeeccCC-ccccccc---ccCCCCCEEECCCCCCCCC--hhhc--cCCCCCEEECCCC
Confidence 1223445555555553 2221110 0123455555555544432 1122 2555555555553
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=6.2e-18 Score=172.63 Aligned_cols=241 Identities=15% Similarity=0.111 Sum_probs=161.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++++.|+++++.++..... +...+++|++|+|++|. ++......++.+++|++|+++.+. ...
T Consensus 50 l~~l~~l~l~~~~l~~lp~~-~~~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 113 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDLQ---------IEEIDTYAFAYAHTIQKLYMGFNA------IRY 113 (597)
T ss_dssp GCCCSEEEESSCEESEECTH-HHHHCCCCSEEECTTSC---------CCEECTTTTTTCTTCCEEECCSSC------CCC
T ss_pred CCCceEEEeeCCCCCCcCHH-HHccCCCCcEEECCCCC---------CCCCChHHhcCCCCCCEEECCCCc------CCC
Confidence 67899999997766653322 33479999999999984 555444467889999999997643 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... .+..+++|+.|+++++ .+... ...++..+++|++|+++++.. .... ......+++|++|+++++ .+.
T Consensus 114 ~~~~----~~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~Ls~N~l-~~~~-~~~~~~l~~L~~L~L~~N-~l~ 184 (597)
T 3oja_B 114 LPPH----VFQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNNL-ERIE-DDTFQATTSLQNLQLSSN-RLT 184 (597)
T ss_dssp CCTT----TTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCC-CBCC-TTTTTTCTTCCEEECTTS-CCS
T ss_pred CCHH----HHcCCCCCCEEEeeCC-CCCCC-CHHHhccCCCCCEEEeeCCcC-CCCC-hhhhhcCCcCcEEECcCC-CCC
Confidence 2221 2246899999999995 66533 233346789999999998753 2211 112456789999999985 444
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH-HH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD-KC 305 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-~~ 305 (488)
.. .+..+++|+.|+++++ .+. .+...++|+.|++++|.+...... ..++|+.|++++|. ++. ..
T Consensus 185 ~~---~~~~l~~L~~L~l~~n-~l~-----~l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~-l~~~~~ 249 (597)
T 3oja_B 185 HV---DLSLIPSLFHANVSYN-LLS-----TLAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNN-LTDTAW 249 (597)
T ss_dssp BC---CGGGCTTCSEEECCSS-CCS-----EEECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSC-CCCCGG
T ss_pred Cc---ChhhhhhhhhhhcccC-ccc-----cccCCchhheeeccCCcccccccc-----cCCCCCEEECCCCC-CCCChh
Confidence 32 2557899999999985 333 345667899999999977643321 35789999999975 443 22
Q ss_pred HHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCC
Q 011317 306 ISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIG 356 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~ 356 (488)
+. .+++|++|+++++ .++......+. .+++|+.|++++| .++
T Consensus 250 l~------~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~ 291 (597)
T 3oja_B 250 LL------NYPGLVEVDLSYN-ELEKIMYHPFV-KMQRLERLYISNN-RLV 291 (597)
T ss_dssp GG------GCTTCSEEECCSS-CCCEEESGGGT-TCSSCCEEECTTS-CCC
T ss_pred hc------cCCCCCEEECCCC-ccCCCCHHHhc-CccCCCEEECCCC-CCC
Confidence 22 2278888888884 55533222222 4677777777776 443
No 39
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=1e-15 Score=146.27 Aligned_cols=264 Identities=18% Similarity=0.126 Sum_probs=158.5
Q ss_pred EEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHH----HhhhcCC-CccEEEccccccccccccccc
Q 011317 73 LCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGL----QQINQHG-KLKHLSLIRSQEFLITYFRRV 147 (488)
Q Consensus 73 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~ 147 (488)
+.++.+.+... +..+....++|++|+|++|. +++.+. ..+..++ +|++|+++++. ....
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~---------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------l~~~ 66 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNN---------LYSISTVELIQAFANTPASVTSLNLSGNS------LGFK 66 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTSC---------GGGSCHHHHHHHHHTCCTTCCEEECCSSC------GGGS
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCCC---------CChHHHHHHHHHHHhCCCceeEEECcCCC------CCHH
Confidence 34445555543 33334345558888888874 444443 4455677 78888886432 2222
Q ss_pred ChHHHHHHHHh-CCCCCEEEEcCCCCCCHHH---HHHHHHhC-CCCceEEecCCCCCCHH---HHHHHHhc-CCCCCEEE
Q 011317 148 NDLGILLMADK-CASMESICLGGFCRVTDTG---FKTILHSC-SNLYKLRVSHGTQLTDL---VFHDISAT-SLSLTHVC 218 (488)
Q Consensus 148 ~~~~l~~l~~~-~~~L~~L~l~~~~~~~~~~---~~~~~~~~-~~L~~L~l~~~~~~~~~---~~~~~~~~-~~~L~~L~ 218 (488)
....+...... +++|++|+++++ .++... +...+..+ ++|++|+++++. ++.. .+...... +++|++|+
T Consensus 67 ~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 67 NSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEE
T ss_pred HHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEE
Confidence 22333333233 378888888885 454332 33333444 788888888765 3332 23333333 46888888
Q ss_pred ecCCCCCCHHHHH----HhhCCC-CcCEEeccCCCCCChHHHH----hhcCC-CCccEEEeCCCccchhHHHHHHh---h
Q 011317 219 LRWCNLLTNHAIK----SLASNT-GIKVLDLRDCKNLGDEALR----AISSL-PQLKILLLDGSDISDVGVSYLRL---T 285 (488)
Q Consensus 219 l~~~~~~~~~~~~----~l~~~~-~L~~L~l~~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~i~~~~~~~l~~---~ 285 (488)
++++ .+++.+.. .+...+ +|++|++++| .+++.+.. .+..+ ++|++|++++|.+++.+...+.. .
T Consensus 145 Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 145 LRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp CTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 8884 55533322 234554 8999999886 55554443 33455 48999999999888765543332 1
Q ss_pred cCCCccEEecCCCCCCCHH---HHHHHhccCCCCCeeEEecCCCC--CCCHHHHHHHHhc---CCCCCeEeecCCCCCCH
Q 011317 286 VITSLVKLSLRGCKRLTDK---CISALFDGTSKLQLQELDLSNLP--HLSDNGILTLATC---RVPISELRVRQCPLIGD 357 (488)
Q Consensus 286 ~~~~L~~L~l~~~~~l~~~---~~~~l~~~~~~~~L~~L~l~~~~--~l~~~~~~~l~~~---~~~L~~L~l~~~~~l~~ 357 (488)
..++|+.|++++| .+++. .+..+.... ++|++|++++|. .+++.++..+... +++|+.|++++| .+.+
T Consensus 223 ~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l--~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~ 298 (362)
T 3goz_A 223 IPNHVVSLNLCLN-CLHGPSLENLKLLKDSL--KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHP 298 (362)
T ss_dssp SCTTCCEEECCSS-CCCCCCHHHHHHTTTTT--TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCG
T ss_pred CCCCceEEECcCC-CCCcHHHHHHHHHHhcC--CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCC
Confidence 2458999999986 46653 334333333 789999999863 3777777766543 456778889888 6666
Q ss_pred HHH
Q 011317 358 TSV 360 (488)
Q Consensus 358 ~~~ 360 (488)
...
T Consensus 299 ~~~ 301 (362)
T 3goz_A 299 SHS 301 (362)
T ss_dssp GGC
T ss_pred cch
Confidence 533
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=1.6e-17 Score=163.27 Aligned_cols=280 Identities=19% Similarity=0.167 Sum_probs=172.1
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..+++|++|+++++.+.... ...+++|++|++++|. ++.. .++.+++|++|+++.+. .
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~---------l~~~---~~~~l~~L~~L~L~~N~------l 118 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK---------LTNL---DVTPLTKLTYLNCDTNK------L 118 (457)
T ss_dssp GGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC---------CSCC---CCTTCTTCCEEECCSSC------C
T ss_pred cccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC---------Ccee---ecCCCCcCCEEECCCCc------C
Confidence 34678888888877766532 2367888888888874 3332 16678888888886542 2
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..+. ...+++|+.|+++++ .++... +..+++|++|+++++..+...+ ...+++|++|+++++ .
T Consensus 119 ~~l~-------~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~ 181 (457)
T 3bz5_A 119 TKLD-------VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-K 181 (457)
T ss_dssp SCCC-------CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-C
T ss_pred Ceec-------CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-c
Confidence 2221 245788888888874 554431 3457888888888775443321 335678888888875 4
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 304 (488)
+...+ +..+++|+.|+++++ .+... .+..+++|+.|++++|.++... +. .+++|+.|+++++. ++..
T Consensus 182 l~~l~---l~~l~~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~--~l~~L~~L~l~~N~-l~~~ 248 (457)
T 3bz5_A 182 ITELD---VSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSNKLTEID---VT--PLTQLTYFDCSVNP-LTEL 248 (457)
T ss_dssp CCCCC---CTTCTTCCEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSC-CSCC
T ss_pred cceec---cccCCCCCEEECcCC-cCCee---ccccCCCCCEEECcCCcccccC---cc--ccCCCCEEEeeCCc-CCCc
Confidence 44322 567788888888875 44433 3667788888888888777633 22 47888888888764 4322
Q ss_pred HHHHHhccCCCCCee----------EEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCC
Q 011317 305 CISALFDGTSKLQLQ----------ELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWY 374 (488)
Q Consensus 305 ~~~~l~~~~~~~~L~----------~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~ 374 (488)
... .+++|+ .|++++|..+.... ...|++|+.|++++|..+..... .. ..+...+...
T Consensus 249 ~~~------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~-~~-~~L~~L~l~~ 316 (457)
T 3bz5_A 249 DVS------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDC-QA-AGITELDLSQ 316 (457)
T ss_dssp CCT------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEEC-TT-CCCSCCCCTT
T ss_pred CHH------HCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceecc-CC-CcceEechhh
Confidence 111 114444 44444443222111 12578899999988853321110 00 0000001116
Q ss_pred CCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 375 GSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 375 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+++|+.|++++|. ++.. .+. .|++|+.|++++|.
T Consensus 317 ~~~L~~L~L~~N~-l~~l---~l~--~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 317 NPKLVYLYLNNTE-LTEL---DVS--HNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCCEEECTTCC-CSCC---CCT--TCTTCSEEECCSSC
T ss_pred cccCCEEECCCCc-cccc---ccc--cCCcCcEEECCCCC
Confidence 7889999999887 6663 243 48999999998885
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.4e-17 Score=158.69 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=42.9
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.++.++.++++++ .+++.++..+..... .+++|+.|++++|. ++......+. .+++|++|++++|+
T Consensus 247 ~~~~l~~l~L~~~-~l~~~~l~~l~~~l~-----~l~~L~~L~Ls~N~-l~~i~~~~~~--~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 247 TNSLIKKFTFRNV-KITDESLFQVMKLLN-----QISGLLELEFSRNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCCEEEEESC-BCCHHHHHHHHHHHH-----TCTTCCEEECCSSC-CCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ccchhhccccccc-cccCcchhhhHHHHh-----cccCCCEEECCCCC-CCccCHHHHh--cCCCCCEEEeeCCC
Confidence 3566777777777 677766655543322 67788888888886 6632222223 37888888888876
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.1e-18 Score=182.84 Aligned_cols=297 Identities=14% Similarity=0.142 Sum_probs=139.8
Q ss_pred CCCCcEEEeecCc-cCh-hHHHHHH------hcCCCccEEeccCCCCCCCccccccChHHHH--hhhcCCCccEEEcccc
Q 011317 67 LPGIQKLCLSVDY-ITD-AMVGTIS------QGLVSLTHLDLRDAPLIEPRITFDLTNSGLQ--QINQHGKLKHLSLIRS 136 (488)
Q Consensus 67 l~~L~~L~l~~~~-~~~-~~~~~~~------~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~--~l~~~~~L~~L~l~~~ 136 (488)
+++|+.|+++.|. +.. .....+. ..+++|++|++++|. ++. ... .++.+++|+.|+++.+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~---------L~~-ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN---------LEE-FPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC---------CCB-CCCHHHHTTCTTCCEEECTTS
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc---------CCc-cCChhhhhcCCCCCEEECCCC
Confidence 5667777776665 544 2222222 134467777776663 331 111 3556667777776543
Q ss_pred cccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCC-CceEEecCCCCCCHHHHHHHHhcC--CC
Q 011317 137 QEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSN-LYKLRVSHGTQLTDLVFHDISATS--LS 213 (488)
Q Consensus 137 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~ 213 (488)
. ...++ ....+++|+.|+++++ .+. . ++..+..+++ |+.|+++++. +.. +....... ++
T Consensus 584 ~------l~~lp------~~~~L~~L~~L~Ls~N-~l~-~-lp~~l~~l~~~L~~L~Ls~N~-L~~--lp~~~~~~~~~~ 645 (876)
T 4ecn_A 584 K------VRHLE------AFGTNVKLTDLKLDYN-QIE-E-IPEDFCAFTDQVEGLGFSHNK-LKY--IPNIFNAKSVYV 645 (876)
T ss_dssp C------CCBCC------CCCTTSEESEEECCSS-CCS-C-CCTTSCEECTTCCEEECCSSC-CCS--CCSCCCTTCSSC
T ss_pred C------cccch------hhcCCCcceEEECcCC-ccc-c-chHHHhhccccCCEEECcCCC-CCc--CchhhhccccCC
Confidence 2 11111 1134566667777663 443 1 2211234555 7777776654 221 11111111 23
Q ss_pred CCEEEecCCCCCCHHHH---HHhh--CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHh----
Q 011317 214 LTHVCLRWCNLLTNHAI---KSLA--SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRL---- 284 (488)
Q Consensus 214 L~~L~l~~~~~~~~~~~---~~l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~---- 284 (488)
|+.|+++++ .+..... ..+. .+++|+.|+++++ .+.......+..+++|+.|+|++|.+.......+..
T Consensus 646 L~~L~Ls~N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 646 MGSVDFSYN-KIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp EEEEECCSS-CTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred CCEEECcCC-cCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 667777664 2221100 0011 2346777777664 344333333346667777777776555211111100
Q ss_pred -hcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCC-----CCCHH
Q 011317 285 -TVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP-----LIGDT 358 (488)
Q Consensus 285 -~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~-----~l~~~ 358 (488)
..+++|+.|++++|. ++. +........+++|+.|+|+++ .++.- ...+. .+++|+.|++++|+ .+...
T Consensus 724 l~nl~~L~~L~Ls~N~-L~~--lp~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~l~-~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFNK-LTS--LSDDFRATTLPYLSNMDVSYN-CFSSF-PTQPL-NSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp CTTGGGCCEEECCSSC-CCC--CCGGGSTTTCTTCCEEECCSS-CCSSC-CCGGG-GCTTCCEEECCCCBCTTCCBCCCC
T ss_pred ccccCCccEEECCCCC-Ccc--chHHhhhccCCCcCEEEeCCC-CCCcc-chhhh-cCCCCCEEECCCCCCccccccccc
Confidence 012267777777653 431 111111012267777777763 44421 11112 46777777776532 11111
Q ss_pred HHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 359 SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 359 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
....+. .+++|+.|++++|. ++. +....+++|+.|++++|+
T Consensus 798 ip~~l~---------~L~~L~~L~Ls~N~-L~~-----Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 798 WPTGIT---------TCPSLIQLQIGSND-IRK-----VDEKLTPQLYILDIADNP 838 (876)
T ss_dssp CCTTGG---------GCSSCCEEECCSSC-CCB-----CCSCCCSSSCEEECCSCT
T ss_pred ChHHHh---------cCCCCCEEECCCCC-CCc-----cCHhhcCCCCEEECCCCC
Confidence 111111 56777777777776 421 211124677777777775
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=3.4e-18 Score=179.05 Aligned_cols=302 Identities=11% Similarity=0.043 Sum_probs=181.8
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccCh-HHHHhhh-------cCCCccEEEccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTN-SGLQQIN-------QHGKLKHLSLIRSQ 137 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~-~~l~~l~-------~~~~L~~L~l~~~~ 137 (488)
.+++|++|+|+.|.+.......+ ..+++|+.|+|++|.. ++. .....++ .+++|++|+++++.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~--------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRG--------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTT--------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCC--------cccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 47889999998776544433333 3688999999988731 343 2222232 45689999987543
Q ss_pred ccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCC-CCE
Q 011317 138 EFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLS-LTH 216 (488)
Q Consensus 138 ~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~ 216 (488)
...++.. .....+++|+.|+++++ .+.. ++ .+..+++|+.|+++++.. . .+......+++ |+.
T Consensus 560 ------L~~ip~~---~~l~~L~~L~~L~Ls~N-~l~~--lp-~~~~L~~L~~L~Ls~N~l-~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 560 ------LEEFPAS---ASLQKMVKLGLLDCVHN-KVRH--LE-AFGTNVKLTDLKLDYNQI-E--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp ------CCBCCCH---HHHTTCTTCCEEECTTS-CCCB--CC-CCCTTSEESEEECCSSCC-S--CCCTTSCEECTTCCE
T ss_pred ------CCccCCh---hhhhcCCCCCEEECCCC-Cccc--ch-hhcCCCcceEEECcCCcc-c--cchHHHhhccccCCE
Confidence 2223220 12356888999999884 5552 23 345678889999987653 2 12222345667 999
Q ss_pred EEecCCCCCCHHHHHHhhC--CCCcCEEeccCCCCCChHHH---Hhhc--CCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 217 VCLRWCNLLTNHAIKSLAS--NTGIKVLDLRDCKNLGDEAL---RAIS--SLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 217 L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~---~~l~--~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
|+++++ .+...+ ..+.. .++|+.|+++++. +..... ..+. .+++|+.|++++|.+.......+. .+++
T Consensus 624 L~Ls~N-~L~~lp-~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~--~l~~ 698 (876)
T 4ecn_A 624 LGFSHN-KLKYIP-NIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA--TGSP 698 (876)
T ss_dssp EECCSS-CCCSCC-SCCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHH--TTCC
T ss_pred EECcCC-CCCcCc-hhhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHc--cCCC
Confidence 999885 343211 11222 3458899998863 332111 1112 345899999999988744333333 4889
Q ss_pred ccEEecCCCCCCCHHHHHH-HhccC-----CCCCeeEEecCCCCCCCHHHHHHHH-hcCCCCCeEeecCCCCCCHHHHHH
Q 011317 290 LVKLSLRGCKRLTDKCISA-LFDGT-----SKLQLQELDLSNLPHLSDNGILTLA-TCRVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~-l~~~~-----~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
|+.|++++|. ++. +.. +.... .+++|++|+|++| .++.- ...+. ..+++|+.|++++| .++. +
T Consensus 699 L~~L~Ls~N~-L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l-p~~l~~~~l~~L~~L~Ls~N-~L~~--l-- 768 (876)
T 4ecn_A 699 ISTIILSNNL-MTS--IPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL-SDDFRATTLPYLSNMDVSYN-CFSS--F-- 768 (876)
T ss_dssp CSEEECCSCC-CSC--CCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC-CGGGSTTTCTTCCEEECCSS-CCSS--C--
T ss_pred CCEEECCCCc-CCc--cChHHhccccccccccCCccEEECCCC-CCccc-hHHhhhccCCCcCEEEeCCC-CCCc--c--
Confidence 9999999864 441 111 10000 1138999999985 66511 11121 25889999999998 6654 2
Q ss_pred HHcccccCCCCCCCCccEEeccCCCC-----CCHHHHHHhhccCCCCccEEEecCCCC
Q 011317 363 LASMLVDDDRWYGSSIRLLDLYNCGG-----ITQLAFRWLKKPYFPRLRWLGVTGSVN 415 (488)
Q Consensus 363 l~~~~~~~~~~~~~~L~~L~l~~~~~-----i~~~~~~~l~~~~~~~L~~L~l~~~~~ 415 (488)
..... .+++|+.|++++|+. +.......+.. +++|+.|++++|..
T Consensus 769 -p~~l~-----~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~--L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 769 -PTQPL-----NSSQLKAFGIRHQRDAEGNRILRQWPTGITT--CPSLIQLQIGSNDI 818 (876)
T ss_dssp -CCGGG-----GCTTCCEEECCCCBCTTCCBCCCCCCTTGGG--CSSCCEEECCSSCC
T ss_pred -chhhh-----cCCCCCEEECCCCCCcccccccccChHHHhc--CCCCCEEECCCCCC
Confidence 11111 788999999987431 33322334443 89999999999864
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=9.6e-18 Score=158.38 Aligned_cols=275 Identities=15% Similarity=0.111 Sum_probs=118.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++++.|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++.+. ...
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~------l~~ 114 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDF-KNLKNLHTLILINNK---------ISKISPGAFAPLVKLERLYLSKNQ------LKE 114 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSSC------CSB
T ss_pred CCCCeEEECCCCcCCEeChhhh-ccCCCCCEEECCCCc---------CCeeCHHHhcCCCCCCEEECCCCc------CCc
Confidence 3566666666655554322222 256666666666653 333223345566666666665432 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.. ...++|++|+++++ .+.... ...+..+++|+.|+++++..............+++|++|+++++ .+.
T Consensus 115 l~~-------~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~ 184 (330)
T 1xku_A 115 LPE-------KMPKTLQELRVHEN-EITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NIT 184 (330)
T ss_dssp CCS-------SCCTTCCEEECCSS-CCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCC
T ss_pred cCh-------hhcccccEEECCCC-cccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccc
Confidence 111 11245666666653 443321 22234456666666655432100000111233445555555543 221
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
..+. ...++|+.|+++++ .+.......+..+++|++|++++|.++......+.. +
T Consensus 185 ~l~~---~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l------------------- 239 (330)
T 1xku_A 185 TIPQ---GLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN--T------------------- 239 (330)
T ss_dssp SCCS---SCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG--S-------------------
T ss_pred cCCc---cccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC--C-------------------
Confidence 1000 01244555555443 233333333444444555555444443322211222 3
Q ss_pred HHHhccCCCCCeeEEecCCCCCCC--HHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
++|++|+++++ .++ +.++ ..+++|+.|++++| .++..+...+..... ....+.|+.|+++
T Consensus 240 ---------~~L~~L~L~~N-~l~~lp~~l----~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~---~~~~~~l~~l~l~ 301 (330)
T 1xku_A 240 ---------PHLRELHLNNN-KLVKVPGGL----ADHKYIQVVYLHNN-NISAIGSNDFCPPGY---NTKKASYSGVSLF 301 (330)
T ss_dssp ---------TTCCEEECCSS-CCSSCCTTT----TTCSSCCEEECCSS-CCCCCCTTSSSCSSC---CTTSCCCSEEECC
T ss_pred ---------CCCCEEECCCC-cCccCChhh----ccCCCcCEEECCCC-cCCccChhhcCCccc---ccccccccceEee
Confidence 45555555553 333 1111 14566666666666 444322222211000 0023567777777
Q ss_pred CCCCCCHHHH--HHhhccCCCCccEEEecCC
Q 011317 385 NCGGITQLAF--RWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 385 ~~~~i~~~~~--~~l~~~~~~~L~~L~l~~~ 413 (488)
+|+ +....+ ..+. .+++++.+++++|
T Consensus 302 ~N~-~~~~~i~~~~f~--~~~~l~~l~L~~N 329 (330)
T 1xku_A 302 SNP-VQYWEIQPSTFR--CVYVRAAVQLGNY 329 (330)
T ss_dssp SSS-SCGGGSCGGGGT--TCCCGGGEEC---
T ss_pred cCc-ccccccCccccc--cccceeEEEeccc
Confidence 776 433211 2232 3667777777665
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=157.95 Aligned_cols=174 Identities=13% Similarity=0.135 Sum_probs=120.6
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHH--HHHHhhcCCC
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGV--SYLRLTVITS 289 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~--~~l~~~~~~~ 289 (488)
++|+.|+++++. +.... ....+++|++|+++++ .+.......+..+++|++|++++|.++.... ..+. .+++
T Consensus 302 ~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~--~l~~ 375 (520)
T 2z7x_B 302 MNIKNFTVSGTR-MVHML--CPSKISPFLHLDFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT--QMKS 375 (520)
T ss_dssp CCCSEEEEESSC-CCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT--TCTT
T ss_pred CceeEEEcCCCc-ccccc--chhhCCcccEEEeECC-ccChhhhhhhccCCCCCEEEccCCccCccccchHHHh--hCCC
Confidence 357777777643 22211 0147899999999996 5666556677899999999999999886322 3344 4999
Q ss_pred ccEEecCCCCCCCH-HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC-CCCCeEeecCCCCCCHHHHHHHHccc
Q 011317 290 LVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR-VPISELRVRQCPLIGDTSVIALASML 367 (488)
Q Consensus 290 L~~L~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~ 367 (488)
|+.|++++|. ++. .... .. ..+++|++|+++++ .++..... .+ ++|+.|++++| .++. +..-..
T Consensus 376 L~~L~Ls~N~-l~~~l~~~-~~--~~l~~L~~L~Ls~N-~l~~~~~~----~l~~~L~~L~Ls~N-~l~~--ip~~~~-- 441 (520)
T 2z7x_B 376 LQQLDISQNS-VSYDEKKG-DC--SWTKSLLSLNMSSN-ILTDTIFR----CLPPRIKVLDLHSN-KIKS--IPKQVV-- 441 (520)
T ss_dssp CCEEECCSSC-CBCCGGGC-SC--CCCTTCCEEECCSS-CCCGGGGG----SCCTTCCEEECCSS-CCCC--CCGGGG--
T ss_pred CCEEECCCCc-CCcccccc-hh--ccCccCCEEECcCC-CCCcchhh----hhcccCCEEECCCC-cccc--cchhhh--
Confidence 9999999975 432 1111 11 12389999999995 67654333 33 69999999999 6652 221111
Q ss_pred ccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 368 VDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|++|++++|. ++......+. .+++|++|++++|+
T Consensus 442 ------~l~~L~~L~L~~N~-l~~l~~~~~~--~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 442 ------KLEALQELNVASNQ-LKSVPDGIFD--RLTSLQKIWLHTNP 479 (520)
T ss_dssp ------GCTTCCEEECCSSC-CCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ------cCCCCCEEECCCCc-CCccCHHHhc--cCCcccEEECcCCC
Confidence 68999999999997 7753322243 48999999999987
No 46
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.66 E-value=4.9e-19 Score=188.03 Aligned_cols=328 Identities=14% Similarity=0.107 Sum_probs=183.6
Q ss_pred HHHHHHhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCccChhH-HHHHHhcCCCccEEec
Q 011317 22 ARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAM-VGTISQGLVSLTHLDL 100 (488)
Q Consensus 22 ~~~~~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~L 100 (488)
..+.. +|+.++.|++++........ . ....+++|++|+++++...... ...+ ..+++|++|+|
T Consensus 17 ~~vP~-lp~~l~~LdLs~N~i~~i~~---~-----------~~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~L 80 (844)
T 3j0a_A 17 TQVPQ-VLNTTERLLLSFNYIRTVTA---S-----------SFPFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDL 80 (844)
T ss_dssp SCCCS-SCTTCCEEEEESCCCCEECS---S-----------SCSSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEEC
T ss_pred CCCCC-CCCCcCEEECCCCcCCccCh---h-----------HCcccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEEC
Confidence 33444 66677777777543211110 0 1345889999999876332221 1222 47889999999
Q ss_pred cCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHH-HHHHhCCCCCEEEEcCCCCCCHHHHH
Q 011317 101 RDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGIL-LMADKCASMESICLGGFCRVTDTGFK 179 (488)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~~ 179 (488)
++|. ++......+..+++|++|+++.+. +.+.... .....+++|++|+++++ .+....+.
T Consensus 81 s~N~---------l~~~~p~~~~~l~~L~~L~Ls~n~---------l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~ 141 (844)
T 3j0a_A 81 GSSK---------IYFLHPDAFQGLFHLFELRLYFCG---------LSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLH 141 (844)
T ss_dssp TTCC---------CCEECTTSSCSCSSCCCEECTTCC---------CSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCC
T ss_pred CCCc---------CcccCHhHccCCcccCEeeCcCCC---------CCcccccCccccccCCCCEEECCCC-cccccccc
Confidence 9884 554444567788999999997543 1110000 01245889999999984 55433222
Q ss_pred HHHHhCCCCceEEecCCCCC--CHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC------CcCEEeccCCCCCC
Q 011317 180 TILHSCSNLYKLRVSHGTQL--TDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT------GIKVLDLRDCKNLG 251 (488)
Q Consensus 180 ~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~ 251 (488)
..+..+++|++|+++++... ....+..+.. ++|+.|+++++. +.......++.++ +|+.|+++++. +.
T Consensus 142 ~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~ 217 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WT 217 (844)
T ss_dssp GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCC-SS
T ss_pred hhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCc-Cc
Confidence 23467899999999986531 1122222222 689999998853 3221111122333 39999999862 22
Q ss_pred hHHHHh------------------------------------hcC--CCCccEEEeCCCccchhHHHHHHhhcCCCccEE
Q 011317 252 DEALRA------------------------------------ISS--LPQLKILLLDGSDISDVGVSYLRLTVITSLVKL 293 (488)
Q Consensus 252 ~~~~~~------------------------------------l~~--~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L 293 (488)
...... +.. .++|+.|++++|.+.......+. .+++|+.|
T Consensus 218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L 295 (844)
T 3j0a_A 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVL 295 (844)
T ss_dssp TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEE
T ss_pred hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEE
Confidence 211111 111 25677788877766543322222 37778888
Q ss_pred ecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCC
Q 011317 294 SLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRW 373 (488)
Q Consensus 294 ~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~ 373 (488)
+++++. ++...-..+ . .+++|++|+++++ .++......+ ..+++|+.|++++| .++......+.
T Consensus 296 ~L~~n~-i~~~~~~~~-~--~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~i~~~~~~~~~--------- 359 (844)
T 3j0a_A 296 NLAYNK-INKIADEAF-Y--GLDNLQVLNLSYN-LLGELYSSNF-YGLPKVAYIDLQKN-HIAIIQDQTFK--------- 359 (844)
T ss_dssp EEESCC-CCEECTTTT-T--TCSSCCEEEEESC-CCSCCCSCSC-SSCTTCCEEECCSC-CCCCCCSSCSC---------
T ss_pred ECCCCc-CCCCChHHh-c--CCCCCCEEECCCC-CCCccCHHHh-cCCCCCCEEECCCC-CCCccChhhhc---------
Confidence 887753 432111111 1 2277888888874 4432111111 15678888888877 44322111111
Q ss_pred CCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 374 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 374 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++. +. .+++|+.|.+++|.
T Consensus 360 ~l~~L~~L~Ls~N~-l~~-----i~--~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 360 FLEKLQTLDLRDNA-LTT-----IH--FIPSIPDIFLSGNK 392 (844)
T ss_dssp SCCCCCEEEEETCC-SCC-----CS--SCCSCSEEEEESCC
T ss_pred CCCCCCEEECCCCC-CCc-----cc--CCCCcchhccCCCC
Confidence 57888888888887 442 22 26677777777664
No 47
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=1.1e-18 Score=185.39 Aligned_cols=340 Identities=18% Similarity=0.139 Sum_probs=211.8
Q ss_pred CccceeeeeecccccchhhHHHHHHHhhhccceeeeccccccccceecCCCCCCCCCCCcccCCCCCCCcEEEeecCccC
Q 011317 2 QGSKALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYIT 81 (488)
Q Consensus 2 ~~l~~l~l~~~~~~~~~~~~~~~~~~lp~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 81 (488)
.++++|.|+++.-. .. ....|..++ +|+.|+++..... ..+.. .....+++|++|+|+++.+.
T Consensus 24 ~~l~~LdLs~N~i~--~i-~~~~~~~l~-~L~~LdLs~n~~~--~~i~~-----------~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 24 NTTERLLLSFNYIR--TV-TASSFPFLE-QLQLLELGSQYTP--LTIDK-----------EAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp TTCCEEEEESCCCC--EE-CSSSCSSCC-SCSEEEECTTCCC--CEECT-----------TTTSSCTTCCEEECTTCCCC
T ss_pred CCcCEEECCCCcCC--cc-ChhHCcccc-cCeEEeCCCCCCc--cccCH-----------HHhcCCCCCCEEECCCCcCc
Confidence 46788888765332 11 112356666 8888888754210 00100 01345789999999988777
Q ss_pred hhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHh--hhcCCCccEEEcccccccccccccccChHHHHHHHHhC
Q 011317 82 DAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQ--INQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKC 159 (488)
Q Consensus 82 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~ 159 (488)
......+ ..+++|++|+|++|. ++...+.. +..+++|++|+++.+.- ..+. .......+
T Consensus 87 ~~~p~~~-~~l~~L~~L~Ls~n~---------l~~~~~~~~~~~~L~~L~~L~Ls~N~l------~~~~---~~~~~~~L 147 (844)
T 3j0a_A 87 FLHPDAF-QGLFHLFELRLYFCG---------LSDAVLKDGYFRNLKALTRLDLSKNQI------RSLY---LHPSFGKL 147 (844)
T ss_dssp EECTTSS-CSCSSCCCEECTTCC---------CSSCCSTTCCCSSCSSCCEEEEESCCC------CCCC---CCGGGGTC
T ss_pred ccCHhHc-cCCcccCEeeCcCCC---------CCcccccCccccccCCCCEEECCCCcc------cccc---cchhHhhC
Confidence 5433333 378999999999984 44322222 67899999999976531 1111 11123568
Q ss_pred CCCCEEEEcCCCCCCH---HHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCC------CCCEEEecCCCCCCHHHH
Q 011317 160 ASMESICLGGFCRVTD---TGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSL------SLTHVCLRWCNLLTNHAI 230 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~ 230 (488)
++|+.|+++++ .+.. ..+..+. .++|+.|+++++......+. ....++ .|+.|+++++. +.....
T Consensus 148 ~~L~~L~Ls~N-~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~ 221 (844)
T 3j0a_A 148 NSLKSIDFSSN-QIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRVSV--DWGKCMNPFRNMVLEILDVSGNG-WTVDIT 221 (844)
T ss_dssp SSCCEEEEESS-CCCCCCSGGGHHHH--HCSSCCCEECCSBSCCCCCC--CCCSSSCTTTTCCBSEEBCSSCC-SSTTTT
T ss_pred CCCCEEECCCC-cCCeeCHHHccccc--CCccceEECCCCcccccccc--chhhcCCccccCceeEEecCCCc-CchhHH
Confidence 99999999984 4432 2233321 17999999998753221110 011122 49999999862 211110
Q ss_pred HH------------------------------------hh--CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC
Q 011317 231 KS------------------------------------LA--SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 272 (488)
Q Consensus 231 ~~------------------------------------l~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 272 (488)
.. +. ..++|+.|+++++ .+.......+..+++|+.|++++|
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYN 300 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESC
T ss_pred HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCC
Confidence 00 11 1368999999885 555555556778999999999999
Q ss_pred ccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCC
Q 011317 273 DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 352 (488)
Q Consensus 273 ~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 352 (488)
.+.......+.. +++|+.|+++++. ++......+ ..+++|++|+++++ .++......+ ..+++|+.|++++|
T Consensus 301 ~i~~~~~~~~~~--l~~L~~L~Ls~N~-l~~~~~~~~---~~l~~L~~L~L~~N-~i~~~~~~~~-~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 301 KINKIADEAFYG--LDNLQVLNLSYNL-LGELYSSNF---YGLPKVAYIDLQKN-HIAIIQDQTF-KFLEKLQTLDLRDN 372 (844)
T ss_dssp CCCEECTTTTTT--CSSCCEEEEESCC-CSCCCSCSC---SSCTTCCEEECCSC-CCCCCCSSCS-CSCCCCCEEEEETC
T ss_pred cCCCCChHHhcC--CCCCCEEECCCCC-CCccCHHHh---cCCCCCCEEECCCC-CCCccChhhh-cCCCCCCEEECCCC
Confidence 877654443444 8999999999874 431100011 12389999999985 5542221111 25899999999999
Q ss_pred CCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 353 PLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 353 ~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.++. +. .+++|+.|++++|. ++ .+.. ...+++.|++++|.
T Consensus 373 -~l~~-----i~---------~~~~L~~L~l~~N~-l~-----~l~~-~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 373 -ALTT-----IH---------FIPSIPDIFLSGNK-LV-----TLPK-INLTANLIHLSENR 412 (844)
T ss_dssp -CSCC-----CS---------SCCSCSEEEEESCC-CC-----CCCC-CCTTCCEEECCSCC
T ss_pred -CCCc-----cc---------CCCCcchhccCCCC-cc-----cccc-cccccceeecccCc
Confidence 5542 11 57889999999998 55 2222 36789999999885
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.65 E-value=1.8e-17 Score=163.04 Aligned_cols=257 Identities=17% Similarity=0.174 Sum_probs=173.8
Q ss_pred CCCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccc
Q 011317 64 PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITY 143 (488)
Q Consensus 64 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~ 143 (488)
...+++|++|+++.+.+.... + ..+++|++|++++|. ++.. .++.+++|++|+++.+.
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~~---~-~~l~~L~~L~L~~N~---------l~~l---~~~~l~~L~~L~l~~N~------ 138 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNLD---V-TPLTKLTYLNCDTNK---------LTKL---DVSQNPLLTYLNCARNT------ 138 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC---C-TTCTTCCEEECCSSC---------CSCC---CCTTCTTCCEEECTTSC------
T ss_pred cccCCCCCEEECcCCCCceee---c-CCCCcCCEEECCCCc---------CCee---cCCCCCcCCEEECCCCc------
Confidence 345789999999988877642 2 478999999999984 3332 26788999999997543
Q ss_pred ccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 011317 144 FRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 223 (488)
Q Consensus 144 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 223 (488)
...+. ...+++|+.|+++++..+.... +..+++|+.|+++++. ++..+ ...+++|+.|+++++
T Consensus 139 l~~l~-------l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N- 201 (457)
T 3bz5_A 139 LTEID-------VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTN- 201 (457)
T ss_dssp CSCCC-------CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSS-
T ss_pred cceec-------cccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCCc-cceec----cccCCCCCEEECcCC-
Confidence 22221 2458899999999865554332 3468899999999875 33322 456789999999985
Q ss_pred CCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEec--------
Q 011317 224 LLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSL-------- 295 (488)
Q Consensus 224 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l-------- 295 (488)
.+... .+..+++|+.|+++++ .+.... +..+++|+.|++++|.++..... .+++|+.|++
T Consensus 202 ~l~~~---~l~~l~~L~~L~Ls~N-~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~-----~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 202 NITKL---DLNQNIQLTFLDCSSN-KLTEID---VTPLTQLTYFDCSVNPLTELDVS-----TLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp CCSCC---CCTTCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSCCSCCCCT-----TCTTCCEEECTTCCCSCC
T ss_pred cCCee---ccccCCCCCEEECcCC-cccccC---ccccCCCCEEEeeCCcCCCcCHH-----HCCCCCEEeccCCCCCEE
Confidence 44433 3668899999999986 454432 67889999999999987764322 3555555544
Q ss_pred --CCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHH-----HHHH-HhcCCCCCeEeecCCCCCCHHHHHHHHccc
Q 011317 296 --RGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNG-----ILTL-ATCRVPISELRVRQCPLIGDTSVIALASML 367 (488)
Q Consensus 296 --~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~-----~~~l-~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 367 (488)
++|..+.... . ..+++|+.|++++|..+..-. +..+ ...+++|+.|++++| .++.. .+.
T Consensus 270 ~l~~n~~~~~~~----~--~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l---~l~--- 336 (457)
T 3bz5_A 270 DLTHNTQLIYFQ----A--EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTEL---DVS--- 336 (457)
T ss_dssp CCTTCTTCCEEE----C--TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCC---CCT---
T ss_pred ECCCCccCCccc----c--cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-ccccc---ccc---
Confidence 4443222111 1 123889999999875332100 0000 125688999999988 66552 122
Q ss_pred ccCCCCCCCCccEEeccCCCCCCH
Q 011317 368 VDDDRWYGSSIRLLDLYNCGGITQ 391 (488)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~~~~i~~ 391 (488)
.+++|+.|++++|. +++
T Consensus 337 ------~l~~L~~L~l~~N~-l~~ 353 (457)
T 3bz5_A 337 ------HNTKLKSLSCVNAH-IQD 353 (457)
T ss_dssp ------TCTTCSEEECCSSC-CCB
T ss_pred ------cCCcCcEEECCCCC-CCC
Confidence 78999999999998 664
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=4.4e-18 Score=174.78 Aligned_cols=299 Identities=11% Similarity=0.089 Sum_probs=194.7
Q ss_pred CCCCCcEEEeecCccChh-----------------HHHHHH-hcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCC
Q 011317 66 ILPGIQKLCLSVDYITDA-----------------MVGTIS-QGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGK 127 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~-----------------~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~ 127 (488)
.+++|++|+++++.+... ....+. ..+++|++|++++|. +.......++.+++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~---------l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP---------NLTKLPTFLKALPE 274 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT---------TCSSCCTTTTTCSS
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc---------CCccChHHHhcCCC
Confidence 388999999998887763 222221 168999999999985 33333356788999
Q ss_pred ccEEEcccccccccccccccChHHHHH-HHH-----hCCCCCEEEEcCCCCCCHHHHHH--HHHhCCCCceEEecCCCCC
Q 011317 128 LKHLSLIRSQEFLITYFRRVNDLGILL-MAD-----KCASMESICLGGFCRVTDTGFKT--ILHSCSNLYKLRVSHGTQL 199 (488)
Q Consensus 128 L~~L~l~~~~~~~~~~~~~~~~~~l~~-l~~-----~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 199 (488)
|++|+++.+. .++...++. +.. .+++|+.|+++++ .++. ++. .+..+++|++|+++++...
T Consensus 275 L~~L~Ls~n~--------~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~--ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 275 MQLINVACNR--------GISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKT--FPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp CCEEECTTCT--------TSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSS--CCCHHHHTTCTTCCEEECCSCCCE
T ss_pred CCEEECcCCC--------CCccccchHHHHhhhccccCCCCCEEECCCC-cCCc--cCchhhhccCCCCCEEeCcCCcCc
Confidence 9999997431 144412222 222 2489999999995 6652 332 4577999999999987532
Q ss_pred CHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCC-cCEEeccCCCCCChHHHHhhcC--CCCccEEEeCCCccch
Q 011317 200 TDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG-IKVLDLRDCKNLGDEALRAISS--LPQLKILLLDGSDISD 276 (488)
Q Consensus 200 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~i~~ 276 (488)
...+ ....+++|++|+++++ .+... ...+..+++ |+.|+++++ .+... ...+.. +++|+.|++++|.+..
T Consensus 344 g~ip---~~~~l~~L~~L~L~~N-~l~~l-p~~l~~l~~~L~~L~Ls~N-~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 344 GKLP---AFGSEIKLASLNLAYN-QITEI-PANFCGFTEQVENLSFAHN-KLKYI-PNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp EECC---CCEEEEEESEEECCSS-EEEEC-CTTSEEECTTCCEEECCSS-CCSSC-CSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cchh---hhCCCCCCCEEECCCC-ccccc-cHhhhhhcccCcEEEccCC-cCccc-chhhhhcccCccCEEECcCCcCCC
Confidence 1222 2346689999999985 44311 123557888 999999986 44422 223333 4589999999998875
Q ss_pred hHHHHHH-----hhcCCCccEEecCCCCCCC---HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHH------hcCC
Q 011317 277 VGVSYLR-----LTVITSLVKLSLRGCKRLT---DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA------TCRV 342 (488)
Q Consensus 277 ~~~~~l~-----~~~~~~L~~L~l~~~~~l~---~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~------~~~~ 342 (488)
.....+. ...+++|+.|++++|. ++ ...+..+ ++|++|+++++ .++.-....+. +.++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l------~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTG------SPLSSINLMGN-MLTEIPKNSLKDENENFKNTY 488 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTT------CCCSEEECCSS-CCSBCCSSSSEETTEECTTGG
T ss_pred cchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccC------CCCCEEECCCC-CCCCcCHHHhccccccccccC
Confidence 4333232 0025699999999975 44 2222223 89999999994 56511111000 1123
Q ss_pred CCCeEeecCCCCCCHHHHHHHH-cccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCC
Q 011317 343 PISELRVRQCPLIGDTSVIALA-SMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 343 ~L~~L~l~~~~~l~~~~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
+|+.|++++| .++... ..+. . .+++|+.|++++|. ++. ....+.. +++|+.|++++|
T Consensus 489 ~L~~L~Ls~N-~l~~lp-~~~~~~--------~l~~L~~L~Ls~N~-l~~-ip~~~~~--l~~L~~L~Ls~N 546 (636)
T 4eco_A 489 LLTSIDLRFN-KLTKLS-DDFRAT--------TLPYLVGIDLSYNS-FSK-FPTQPLN--SSTLKGFGIRNQ 546 (636)
T ss_dssp GCCEEECCSS-CCCBCC-GGGSTT--------TCTTCCEEECCSSC-CSS-CCCGGGG--CSSCCEEECCSC
T ss_pred CccEEECcCC-cCCccC-hhhhhc--------cCCCcCEEECCCCC-CCC-cChhhhc--CCCCCEEECCCC
Confidence 8999999999 666211 1111 1 67899999999998 765 2234443 899999999654
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=1e-16 Score=152.80 Aligned_cols=280 Identities=14% Similarity=0.104 Sum_probs=189.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
++.....+.+++.++.-- . ...++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 30 C~~~~~c~~~~~~l~~iP-~---~~~~~L~~L~l~~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~~ 90 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIP-S---GLTEAVKSLDLSNNR---------ITYISNSDLQRCVNLQALVLTSNG------INT 90 (353)
T ss_dssp ECTTSEEECCSTTCSSCC-T---TCCTTCCEEECTTSC---------CCEECTTTTTTCTTCCEEECTTSC------CCE
T ss_pred CCCCeEeeCCCCCccccc-c---cccccCcEEECCCCc---------CcccCHHHhccCCCCCEEECCCCc------cCc
Confidence 555566777777766521 1 135689999999984 554344457889999999997543 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.... ...+++|++|+++++ .++.. ....+..+++|++|+++++. +...+.......+++|++|+++++..+.
T Consensus 91 ~~~~~----~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 91 IEEDS----FSSLGSLEHLDLSYN-YLSNL-SSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp ECTTT----TTTCTTCCEEECCSS-CCSSC-CHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC
T ss_pred cCHhh----cCCCCCCCEEECCCC-cCCcC-CHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc
Confidence 22111 245899999999984 66543 23335679999999999875 3221110134578899999999864444
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
......+..+++|+.|+++++ .+.......+..+++|++|++++|.+.......+.. +++|+.|+++++. ++....
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~L~~L~L~~n~-l~~~~~ 239 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV--TSSVECLELRDTD-LDTFHF 239 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH--TTTEEEEEEESCB-CTTCCC
T ss_pred ccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhh--cccccEEECCCCc-cccccc
Confidence 433344668899999999986 566555667788999999999999887555444444 8999999999864 443211
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHH---HhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEec
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTL---ATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDL 383 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l 383 (488)
..+......+.++.+++.+ ..+++..+..+ ...+++|+.|++++| .++.... .+.. .+++|++|++
T Consensus 240 ~~l~~~~~~~~l~~l~L~~-~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~--------~l~~L~~L~L 308 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRN-VKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFD--------RLTSLQKIWL 308 (353)
T ss_dssp C------CCCCCCEEEEES-CBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTT--------TCTTCCEEEC
T ss_pred cccccccccchhhcccccc-ccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-HHHh--------cCCCCCEEEe
Confidence 1111111227799999998 47887665543 346899999999999 6652111 1111 7899999999
Q ss_pred cCCC
Q 011317 384 YNCG 387 (488)
Q Consensus 384 ~~~~ 387 (488)
++|+
T Consensus 309 ~~N~ 312 (353)
T 2z80_A 309 HTNP 312 (353)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 9998
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=8.7e-18 Score=158.76 Aligned_cols=134 Identities=16% Similarity=0.067 Sum_probs=66.7
Q ss_pred CCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH---HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHH
Q 011317 262 PQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD---KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLA 338 (488)
Q Consensus 262 ~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 338 (488)
++|++|++++|.++......+.. +++|+.|+++++. ++. ..+.. +++|++|+++++ .++.-. .. .
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~--l~~L~~L~L~~N~-l~~~~~~~~~~------l~~L~~L~L~~N-~l~~lp-~~-l 260 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLR--YSKLYRLGLGHNQ-IRMIENGSLSF------LPTLRELHLDNN-KLSRVP-AG-L 260 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTT--CTTCSCCBCCSSC-CCCCCTTGGGG------CTTCCEEECCSS-CCCBCC-TT-G
T ss_pred CCCCEEECCCCcCCccCHHHhcC--CCCCCEEECCCCc-CCcCChhHhhC------CCCCCEEECCCC-cCeecC-hh-h
Confidence 45666666666554433222333 5666666666543 321 11111 166777777663 444110 01 1
Q ss_pred hcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH--HHHHhhccCCCCccEEEecCCC
Q 011317 339 TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL--AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 339 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~--~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
..+++|+.|++++| .++..+...+...... ...++|+.|++++|+ +... ....+. .+++|+.+++++|.
T Consensus 261 ~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~---~~~~~l~~L~l~~N~-~~~~~~~~~~~~--~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTN-NITKVGVNDFCPVGFG---VKRAYYNGISLFNNP-VPYWEVQPATFR--CVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSS-CCCBCCTTSSSCSSCC---SSSCCBSEEECCSSS-SCGGGSCGGGGT--TBCCSTTEEC----
T ss_pred hcCccCCEEECCCC-CCCccChhHccccccc---cccccccceEeecCc-ccccccCccccc--ccchhhhhhccccc
Confidence 25777888888777 5554433333221000 024678888888887 5421 122333 37788888887763
No 52
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=1.7e-15 Score=153.61 Aligned_cols=175 Identities=12% Similarity=0.156 Sum_probs=119.5
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHH--HHHHhhcCCC
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGV--SYLRLTVITS 289 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~--~~l~~~~~~~ 289 (488)
++|++|+++++. +.... ....+++|++|+++++ .+.......+..+++|+.|++++|.++.... ..+. .+++
T Consensus 331 ~~L~~L~l~~n~-~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~--~l~~ 404 (562)
T 3a79_B 331 MNIKMLSISDTP-FIHMV--CPPSPSSFTFLNFTQN-VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK--NMSS 404 (562)
T ss_dssp CCCSEEEEESSC-CCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT--TCTT
T ss_pred CcceEEEccCCC-ccccc--CccCCCCceEEECCCC-ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhc--CCCC
Confidence 357777776643 22111 1147899999999996 5666556677899999999999998886322 2233 4899
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC-CCCCeEeecCCCCCCHHHHHHHHcccc
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR-VPISELRVRQCPLIGDTSVIALASMLV 368 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~ 368 (488)
|+.|+++++. ++...-.... ..+++|++|+++++ .++..... .+ ++|+.|++++| .++ .+....+
T Consensus 405 L~~L~l~~N~-l~~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~----~l~~~L~~L~L~~N-~l~-----~ip~~~~ 470 (562)
T 3a79_B 405 LETLDVSLNS-LNSHAYDRTC--AWAESILVLNLSSN-MLTGSVFR----CLPPKVKVLDLHNN-RIM-----SIPKDVT 470 (562)
T ss_dssp CCEEECTTSC-CBSCCSSCCC--CCCTTCCEEECCSS-CCCGGGGS----SCCTTCSEEECCSS-CCC-----CCCTTTT
T ss_pred CCEEECCCCc-CCCccChhhh--cCcccCCEEECCCC-CCCcchhh----hhcCcCCEEECCCC-cCc-----ccChhhc
Confidence 9999999975 3320000011 12389999999994 67654333 34 69999999999 666 1221111
Q ss_pred cCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 369 DDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 369 ~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|++|++++|. ++......+. .+++|+.|++++|+
T Consensus 471 -----~l~~L~~L~L~~N~-l~~l~~~~~~--~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 471 -----HLQALQELNVASNQ-LKSVPDGVFD--RLTSLQYIWLHDNP 508 (562)
T ss_dssp -----SSCCCSEEECCSSC-CCCCCTTSTT--TCTTCCCEECCSCC
T ss_pred -----CCCCCCEEECCCCC-CCCCCHHHHh--cCCCCCEEEecCCC
Confidence 68899999999998 7743322243 48999999999987
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=3.4e-17 Score=169.01 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=39.1
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 395 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 395 (488)
++|++|+++++ .++......+ ..+++|+.|++++| +++......+. .+++|++|++++|. ++.....
T Consensus 494 ~~L~~L~Ls~N-~L~~l~~~~f-~~l~~L~~L~Ls~N-~l~~l~~~~~~---------~l~~L~~L~Ls~N~-l~~~~~~ 560 (635)
T 4g8a_A 494 RNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHN-NFFSLDTFPYK---------CLNSLQVLDYSLNH-IMTSKKQ 560 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTS-CCCBCCCGGGT---------TCTTCCEEECTTSC-CCBCCSS
T ss_pred cccCEEECCCC-ccCCcChHHH-cCCCCCCEEECCCC-cCCCCChhHHh---------CCCCCCEEECCCCc-CCCCCHH
Confidence 55666666663 4432111111 14566666666665 33322111111 45566666666665 4443333
Q ss_pred HhhccCCCCccEEEecCCC
Q 011317 396 WLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 396 ~l~~~~~~~L~~L~l~~~~ 414 (488)
.+.. ..++|+.|++++|+
T Consensus 561 ~l~~-l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 561 ELQH-FPSSLAFLNLTQND 578 (635)
T ss_dssp CTTC-CCTTCCEEECTTCC
T ss_pred HHHh-hhCcCCEEEeeCCC
Confidence 3322 11456666666554
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.59 E-value=3e-16 Score=148.11 Aligned_cols=179 Identities=17% Similarity=0.126 Sum_probs=110.3
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCCh--HHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGD--EALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
++|++|+++++ .+.......+..+++|+.|+++++ .+.. .....+..+++|++|++++|.++.... ...++
T Consensus 121 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-----~~~~~ 193 (330)
T 1xku_A 121 KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-----GLPPS 193 (330)
T ss_dssp TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-----SCCTT
T ss_pred ccccEEECCCC-cccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCCc-----ccccc
Confidence 46666666653 333333334556777777777774 3332 223345677888888888876653211 12467
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHccccc
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 369 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 369 (488)
|+.|+++++. ++......+. .+++|++|+++++ .++......+. .+++|+.|++++| .++. +.....
T Consensus 194 L~~L~l~~n~-l~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~-----lp~~l~- 260 (330)
T 1xku_A 194 LTELHLDGNK-ITKVDAASLK---GLNNLAKLGLSFN-SISAVDNGSLA-NTPHLRELHLNNN-KLVK-----VPGGLA- 260 (330)
T ss_dssp CSEEECTTSC-CCEECTGGGT---TCTTCCEEECCSS-CCCEECTTTGG-GSTTCCEEECCSS-CCSS-----CCTTTT-
T ss_pred CCEEECCCCc-CCccCHHHhc---CCCCCCEEECCCC-cCceeChhhcc-CCCCCCEEECCCC-cCcc-----CChhhc-
Confidence 8888888764 4422111121 2278999999884 56533222222 5899999999999 5552 111111
Q ss_pred CCCCCCCCccEEeccCCCCCCHHHHHHhhcc----CCCCccEEEecCCCC
Q 011317 370 DDRWYGSSIRLLDLYNCGGITQLAFRWLKKP----YFPRLRWLGVTGSVN 415 (488)
Q Consensus 370 ~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~----~~~~L~~L~l~~~~~ 415 (488)
.+++|++|++++|. ++..+...+... ..++|+.|++.+++.
T Consensus 261 ----~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 261 ----DHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp ----TCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ----cCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence 78999999999998 776544444321 247899999999974
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=4.9e-16 Score=145.61 Aligned_cols=260 Identities=15% Similarity=0.132 Sum_probs=146.9
Q ss_pred CcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccCh
Q 011317 70 IQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVND 149 (488)
Q Consensus 70 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 149 (488)
++.++++.+.+.. .+..+...+++|++|++++|. ++......+..+++|++|+++.+.- .....
T Consensus 12 l~i~~ls~~~l~~-~~~~~~~~~~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~l------~~~~~ 75 (317)
T 3o53_A 12 YKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSNVL------YETLD 75 (317)
T ss_dssp EEEESCCTTTHHH-HHHHHHTTGGGCSEEECTTSC---------CCCCCHHHHTTCTTCCEEECTTSCC------EEEEE
T ss_pred eeEeeccccchhh-hHHHHhccCCCCCEEECcCCc---------cCcCCHHHhhCCCcCCEEECCCCcC------Ccchh
Confidence 3344444444432 344445567788888888874 4443444567778888888865431 11111
Q ss_pred HHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHH
Q 011317 150 LGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHA 229 (488)
Q Consensus 150 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 229 (488)
...+++|++|+++++ .+... ...++|++|+++++. +....
T Consensus 76 ------~~~l~~L~~L~Ls~n-~l~~l------~~~~~L~~L~l~~n~---------------------------l~~~~ 115 (317)
T 3o53_A 76 ------LESLSTLRTLDLNNN-YVQEL------LVGPSIETLHAANNN---------------------------ISRVS 115 (317)
T ss_dssp ------ETTCTTCCEEECCSS-EEEEE------EECTTCCEEECCSSC---------------------------CSEEE
T ss_pred ------hhhcCCCCEEECcCC-ccccc------cCCCCcCEEECCCCc---------------------------cCCcC
Confidence 234667777777763 33321 123455555555432 21110
Q ss_pred HHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHH
Q 011317 230 IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISAL 309 (488)
Q Consensus 230 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l 309 (488)
...+++|+.|+++++ .+.......+..+++|++|++++|.++......+.. .+++|+.|++++|. ++..
T Consensus 116 ---~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~-l~~~----- 184 (317)
T 3o53_A 116 ---CSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-SSDTLEHLNLQYNF-IYDV----- 184 (317)
T ss_dssp ---ECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG-GTTTCCEEECTTSC-CCEE-----
T ss_pred ---ccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh-ccCcCCEEECCCCc-Cccc-----
Confidence 113466777777764 444444445556777777777777666544444433 36777777777754 4321
Q ss_pred hccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCC
Q 011317 310 FDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGI 389 (488)
Q Consensus 310 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i 389 (488)
.....+++|++|+++++ .++..... ...+++|+.|++++| .++. +..... .+++|+.|++++|+ +
T Consensus 185 ~~~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~--l~~~~~--------~l~~L~~L~l~~N~-~ 249 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVL--IEKALR--------FSQNLEHFDLRGNG-F 249 (317)
T ss_dssp ECCCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCE--ECTTCC--------CCTTCCEEECTTCC-C
T ss_pred ccccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccc--hhhHhh--------cCCCCCEEEccCCC-c
Confidence 11112378888888884 55522111 225788999999888 5553 111111 67889999999988 7
Q ss_pred C-HHHHHHhhccCCCCccEEEecCC
Q 011317 390 T-QLAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 390 ~-~~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
+ +.....+. .+++|+.+++.++
T Consensus 250 ~~~~~~~~~~--~~~~L~~l~l~~~ 272 (317)
T 3o53_A 250 HCGTLRDFFS--KNQRVQTVAKQTV 272 (317)
T ss_dssp BHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred cCcCHHHHHh--ccccceEEECCCc
Confidence 7 43334444 3777877777544
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.54 E-value=1e-16 Score=151.40 Aligned_cols=270 Identities=16% Similarity=0.133 Sum_probs=142.0
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|+.|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++.+. ...
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 116 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNK---------ISKIHEKAFSPLRKLQKLYISKNH------LVE 116 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECGGGSTTCTTCCEEECCSSC------CCS
T ss_pred CCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCc---------cCccCHhHhhCcCCCCEEECCCCc------CCc
Confidence 4677777777666654322222 367777777777763 444334456677777777776432 112
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHH-HHHHhcCCCCCEEEecCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVF-HDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 225 (488)
+... ..++|++|+++++ .+... ....+..+++|++|+++++.. ...+. ......+ +|++|+++++ .+
T Consensus 117 l~~~-------~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l-~L~~L~l~~n-~l 184 (332)
T 2ft3_A 117 IPPN-------LPSSLVELRIHDN-RIRKV-PKGVFSGLRNMNCIEMGGNPL-ENSGFEPGAFDGL-KLNYLRISEA-KL 184 (332)
T ss_dssp CCSS-------CCTTCCEEECCSS-CCCCC-CSGGGSSCSSCCEEECCSCCC-BGGGSCTTSSCSC-CCSCCBCCSS-BC
T ss_pred cCcc-------ccccCCEEECCCC-ccCcc-CHhHhCCCccCCEEECCCCcc-ccCCCCcccccCC-ccCEEECcCC-CC
Confidence 2111 1256777777773 44432 112234567777777776542 11000 0111223 6777777764 33
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--H
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--D 303 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~ 303 (488)
...+. ...++|+.|+++++ .+.......+..+++|+.|++++|.+.......+.. +++|+.|++++|. ++ +
T Consensus 185 ~~l~~---~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~lp 257 (332)
T 2ft3_A 185 TGIPK---DLPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF--LPTLRELHLDNNK-LSRVP 257 (332)
T ss_dssp SSCCS---SSCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG--CTTCCEEECCSSC-CCBCC
T ss_pred CccCc---cccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC--CCCCCEEECCCCc-CeecC
Confidence 22110 12357777777774 454444455667777777777777665543333333 6777777777753 43 1
Q ss_pred HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHh-----cCCCCCeEeecCCCCCCHHHHH-HHHcccccCCCCCCCC
Q 011317 304 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT-----CRVPISELRVRQCPLIGDTSVI-ALASMLVDDDRWYGSS 377 (488)
Q Consensus 304 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-----~~~~L~~L~l~~~~~l~~~~~~-~l~~~~~~~~~~~~~~ 377 (488)
.++. .+++|++|++++ +.++..+...+.. ..+.|+.|++.+|+ +....+. .... .+++
T Consensus 258 ~~l~------~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~--------~l~~ 321 (332)
T 2ft3_A 258 AGLP------DLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFR--------CVTD 321 (332)
T ss_dssp TTGG------GCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGT--------TBCC
T ss_pred hhhh------cCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCc-ccccccCccccc--------ccch
Confidence 1111 126777777777 3555332222211 13567777777773 3311111 1111 5677
Q ss_pred ccEEeccCCC
Q 011317 378 IRLLDLYNCG 387 (488)
Q Consensus 378 L~~L~l~~~~ 387 (488)
|+.|++++|.
T Consensus 322 L~~l~l~~n~ 331 (332)
T 2ft3_A 322 RLAIQFGNYK 331 (332)
T ss_dssp STTEEC----
T ss_pred hhhhhccccc
Confidence 7777777664
No 57
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.51 E-value=5.1e-13 Score=127.21 Aligned_cols=192 Identities=23% Similarity=0.252 Sum_probs=111.0
Q ss_pred CCCCEEEecCCCCCCHHHHHHhh-----CCCCcCEEeccCCCCCChHHHHhhc-CCCCccEEEeCCCccchhHHHHHHh-
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLA-----SNTGIKVLDLRDCKNLGDEALRAIS-SLPQLKILLLDGSDISDVGVSYLRL- 284 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~l~~- 284 (488)
++|++|++++| .++......+. .+++|+.|++++| .+++.+...+. .+++|++|+|++|.+++.+...+..
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 45666666663 45544444333 2256666776664 45555554443 3456777777777777666655533
Q ss_pred --hcCCCccEEecCCCCCCCHHHHHHHhcc-CCCCCeeEEecCCCCCCCHHHHHHHH---hcCCCCCeEeecCCCCCCHH
Q 011317 285 --TVITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDT 358 (488)
Q Consensus 285 --~~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~ 358 (488)
...++|++|++++| .+++.+...++.. ...++|++|+|++ +.+++.++..+. ..+++|+.|++++| .+++.
T Consensus 150 L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~ 226 (372)
T 3un9_A 150 LLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDT 226 (372)
T ss_dssp HHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHH
T ss_pred HHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHH
Confidence 13466777777775 3665555444321 0116677777777 357766655443 24567778888777 77777
Q ss_pred HHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCC---ccEEE--ecCCC
Q 011317 359 SVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPR---LRWLG--VTGSV 414 (488)
Q Consensus 359 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~---L~~L~--l~~~~ 414 (488)
+...++.++. .+++|++|++++|. |++.+...+.....+. |+.+. +.++.
T Consensus 227 g~~~l~~~L~-----~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~ 281 (372)
T 3un9_A 227 AALALARAAR-----EHPSLELLHLYFNE-LSSEGRQVLRDLGGAAEGGARVVVSLTEGTA 281 (372)
T ss_dssp HHHHHHHHHH-----HCSSCCEEECTTSS-CCHHHHHHHHHCC------CEEECCCC----
T ss_pred HHHHHHHHHH-----hCCCCCEEeccCCC-CCHHHHHHHHHHhcCCCccchhhHhhhcCCc
Confidence 7766665433 46778888887776 7777776665522222 66665 55444
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.50 E-value=3.1e-15 Score=146.91 Aligned_cols=133 Identities=19% Similarity=0.178 Sum_probs=60.9
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+++|++|+++++..+.......+..+++|+.|+++++ .+... ..+..+++|+.|++++|.++......+.. +++
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~ 232 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQG--LMH 232 (440)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSC--CCCTTCSSCCEEECTTSCCCEECTTTTTT--CTT
T ss_pred hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccc--cccCCCcccCEEECCCCccCccChhhhcc--Ccc
Confidence 34445555554433332222222334555666665554 22211 13445556666666666554433322322 556
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCC
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 353 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 353 (488)
|+.|+++++. ++......+ ..+++|++|+|++ +.++...... ...+++|+.|++++|+
T Consensus 233 L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 233 LQKLWMIQSQ-IQVIERNAF---DNLQSLVEINLAH-NNLTLLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEEECTTCC-CCEECTTSS---TTCTTCCEEECTT-SCCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred CCEEECCCCc-eeEEChhhh---cCCCCCCEEECCC-CCCCccChhH-hccccCCCEEEcCCCC
Confidence 6666666542 331111111 0125666666666 3444221111 1246677777777664
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.50 E-value=4.7e-15 Score=146.20 Aligned_cols=133 Identities=23% Similarity=0.201 Sum_probs=59.4
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+++|++|++++++.+.......+..+++|+.|+++++ .+... ..+..+++|+.|++++|.++......+.. +++
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~ 243 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHG--LSS 243 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTT--CTT
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccc--ccccccccccEEECcCCcCcccCcccccC--ccC
Confidence 34445555554433333222222334555555655553 22221 23445556666666665554433332323 556
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCC
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCP 353 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 353 (488)
|+.|+++++. ++......+ . .+++|++|+++++ .++...... ...+++|+.|++++|+
T Consensus 244 L~~L~L~~n~-l~~~~~~~~-~--~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 244 LKKLWVMNSQ-VSLIERNAF-D--GLASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEEECTTSC-CCEECTTTT-T--TCTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred CCEEEeCCCc-CceECHHHh-c--CCCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence 6666665542 321110011 0 1156666666663 443211111 1145667777776664
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=1.3e-16 Score=148.92 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=86.0
Q ss_pred CCCCcCEEeccCCCCCChHH-HHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC
Q 011317 235 SNTGIKVLDLRDCKNLGDEA-LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 313 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 313 (488)
.+++|++|+++++ .+.... ...+..+++|++|++++|.+.......+.. +++|+.|+++++. ++...+.... .
T Consensus 99 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~~~~~~~--~ 172 (306)
T 2z66_A 99 GLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG--LSSLEVLKMAGNS-FQENFLPDIF--T 172 (306)
T ss_dssp TCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT--CTTCCEEECTTCE-EGGGEECSCC--T
T ss_pred CCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhccc--CcCCCEEECCCCc-cccccchhHH--h
Confidence 4556666666553 222221 134455666666666666554332222222 5666666666643 2211000111 1
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHH
Q 011317 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 393 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 393 (488)
.+++|++|+++++ .++......+. .+++|+.|++++| .++......+. .+++|+.|++++|. ++...
T Consensus 173 ~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~ 239 (306)
T 2z66_A 173 ELRNLTFLDLSQC-QLEQLSPTAFN-SLSSLQVLNMSHN-NFFSLDTFPYK---------CLNSLQVLDYSLNH-IMTSK 239 (306)
T ss_dssp TCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECTTS-CCSBCCSGGGT---------TCTTCCEEECTTSC-CCBCS
T ss_pred hCcCCCEEECCCC-CcCCcCHHHhc-CCCCCCEEECCCC-ccCccChhhcc---------CcccCCEeECCCCC-CcccC
Confidence 2267777777774 45432222222 5788888888888 45432221222 67889999998887 66544
Q ss_pred HHHhhccCC-CCccEEEecCCC
Q 011317 394 FRWLKKPYF-PRLRWLGVTGSV 414 (488)
Q Consensus 394 ~~~l~~~~~-~~L~~L~l~~~~ 414 (488)
...+.. + ++|++|++++|+
T Consensus 240 ~~~~~~--~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 240 KQELQH--FPSSLAFLNLTQND 259 (306)
T ss_dssp SSSCCC--CCTTCCEEECTTCC
T ss_pred HHHHHh--hhccCCEEEccCCC
Confidence 444433 5 489999998886
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.49 E-value=5.9e-15 Score=145.46 Aligned_cols=229 Identities=18% Similarity=0.184 Sum_probs=160.9
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
..++++.|+|+++.+.......+ ..+++|++|+|++|. ++......+..+++|++|+|+++. ..
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~---------i~~~~~~~~~~l~~L~~L~L~~n~------l~ 136 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNS---------IRQIEVGAFNGLASLNTLELFDNW------LT 136 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSSC------CS
T ss_pred CCCCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCc---------cCCcChhhccCcccCCEEECCCCc------CC
Confidence 35789999999888776433333 378999999999984 554444567789999999997643 22
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
.+.... +..+++|+.|+++++ .+... ....+..+++|+.|+++++..+...... ....+++|++|+++++ .+
T Consensus 137 ~~~~~~----~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l 208 (452)
T 3zyi_A 137 VIPSGA----FEYLSKLRELWLRNN-PIESI-PSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMC-NI 208 (452)
T ss_dssp BCCTTT----SSSCTTCCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTS-CC
T ss_pred ccChhh----hcccCCCCEEECCCC-Cccee-CHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCC-cc
Confidence 232221 245889999999984 56533 2223456899999999986654432211 2346789999999985 44
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 305 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 305 (488)
... ..+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.......+.. +++|+.|+++++. ++...
T Consensus 209 ~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~ 282 (452)
T 3zyi_A 209 KDM--PNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG--LASLVELNLAHNN-LSSLP 282 (452)
T ss_dssp SSC--CCCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSC-CSCCC
T ss_pred ccc--ccccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCcCceECHHHhcC--CCCCCEEECCCCc-CCccC
Confidence 432 24668899999999995 666666677889999999999999887655444444 8999999999864 54211
Q ss_pred HHHHhccCCCCCeeEEecCCCC
Q 011317 306 ISALFDGTSKLQLQELDLSNLP 327 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~ 327 (488)
...+ ..+++|++|++++++
T Consensus 283 ~~~~---~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 HDLF---TPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSS---TTCTTCCEEECCSSC
T ss_pred hHHh---ccccCCCEEEccCCC
Confidence 1111 123899999999854
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.49 E-value=1.8e-14 Score=132.79 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=89.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++.+.. ...
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~n~~-----l~~ 95 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNV---------LARIDAAAFTGLALLEQLDLSDNAQ-----LRS 95 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC---------CCEECTTTTTTCTTCCEEECCSCTT-----CCC
T ss_pred CCCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCCc---------cceeCHhhcCCccCCCEEeCCCCCC-----ccc
Confidence 4567777777666554332222 356777777777763 3332333455666777777754321 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.... ...+++|++|+++++ .+.... ...+..+++|++|+++++.. .... ......+++|++|+++++ .+.
T Consensus 96 ~~~~~----~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n-~l~ 166 (285)
T 1ozn_A 96 VDPAT----FHGLGRLHTLHLDRC-GLQELG-PGLFRGLAALQYLYLQDNAL-QALP-DDTFRDLGNLTHLFLHGN-RIS 166 (285)
T ss_dssp CCTTT----TTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSCC-CCCC-TTTTTTCTTCCEEECCSS-CCC
T ss_pred cCHHH----hcCCcCCCEEECCCC-cCCEEC-HhHhhCCcCCCEEECCCCcc-cccC-HhHhccCCCccEEECCCC-ccc
Confidence 11111 123566666666663 333221 11123455566666655431 1100 001123444555555442 222
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCC
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 297 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 297 (488)
..+...+..+++|+.|+++++ .+.......+..+++|+.|++++|.++......+.. +++|+.|++++
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~ 234 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP--LRALQYLRLND 234 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT--CTTCCEEECCS
T ss_pred ccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCCHHHccc--CcccCEEeccC
Confidence 211112334444444444443 233333333444444444444444444333222222 44444444444
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.49 E-value=6.3e-15 Score=144.72 Aligned_cols=229 Identities=17% Similarity=0.166 Sum_probs=159.8
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
..++++.|+|+.+.+.......+ ..+++|++|+|++|. ++......+..+++|++|+|+++. ..
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~---------i~~i~~~~~~~l~~L~~L~L~~n~------l~ 125 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNH---------IRTIEIGAFNGLANLNTLELFDNR------LT 125 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSC---------CCEECGGGGTTCSSCCEEECCSSC------CS
T ss_pred CCCCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCc---------CCccChhhccCCccCCEEECCCCc------CC
Confidence 35789999999887776443333 378999999999984 555445567889999999997643 22
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 146 RVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
.+.... +..+++|+.|+++++ .+... ....+..+++|++|+++++..+..... .....+++|++|+++++ .+
T Consensus 126 ~~~~~~----~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n-~l 197 (440)
T 3zyj_A 126 TIPNGA----FVYLSKLKELWLRNN-PIESI-PSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMC-NL 197 (440)
T ss_dssp SCCTTT----SCSCSSCCEEECCSC-CCCEE-CTTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTS-CC
T ss_pred eeCHhH----hhccccCceeeCCCC-ccccc-CHHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCC-cC
Confidence 232211 245789999999984 55543 122245689999999998655443221 12446789999999985 44
Q ss_pred CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHH
Q 011317 226 TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKC 305 (488)
Q Consensus 226 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~ 305 (488)
... ..+..+++|+.|+++++ .+.......+..+++|++|++++|.++......+.. +++|+.|+++++. ++...
T Consensus 198 ~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~ 271 (440)
T 3zyj_A 198 REI--PNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN--LQSLVEINLAHNN-LTLLP 271 (440)
T ss_dssp SSC--CCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT--CTTCCEEECTTSC-CCCCC
T ss_pred ccc--cccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhcC--CCCCCEEECCCCC-CCccC
Confidence 422 23568899999999996 676666677889999999999999887655544444 8999999999964 54211
Q ss_pred HHHHhccCCCCCeeEEecCCCC
Q 011317 306 ISALFDGTSKLQLQELDLSNLP 327 (488)
Q Consensus 306 ~~~l~~~~~~~~L~~L~l~~~~ 327 (488)
...+ . .+++|+.|++++++
T Consensus 272 ~~~~-~--~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 272 HDLF-T--PLHHLERIHLHHNP 290 (440)
T ss_dssp TTTT-S--SCTTCCEEECCSSC
T ss_pred hhHh-c--cccCCCEEEcCCCC
Confidence 1111 1 23899999999854
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.48 E-value=1.1e-15 Score=157.73 Aligned_cols=112 Identities=18% Similarity=0.229 Sum_probs=73.0
Q ss_pred CCCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 65 SILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 65 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
..+++|++|+|+.|.+..-....+ ..+++|++|+|++|. ++......|..+++|++|+++.+. .
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~L~~L~Ls~N~---------l~~l~~~~f~~L~~L~~L~Ls~N~------l 136 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNP---------IQSLALGAFSGLSSLQKLVAVETN------L 136 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCC---------CCEECGGGGTTCTTCCEEECTTSC------C
T ss_pred hCCCCCCEEECCCCcCCCcChhHh-cCCCCCCEEEccCCc---------CCCCCHHHhcCCCCCCEEECCCCc------C
Confidence 347888888888776654322222 368888888888884 444344457788899999987543 2
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 197 (488)
..+.... +..+++|++|+++++ .+........+..+++|++|+++++.
T Consensus 137 ~~l~~~~----~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 137 ASLENFP----IGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCSTTCC----CTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCChhh----hhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc
Confidence 2222211 245788999999884 55432233334668899999998764
No 65
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=5.6e-13 Score=126.95 Aligned_cols=178 Identities=20% Similarity=0.198 Sum_probs=141.9
Q ss_pred CCCcCEEeccCCCCCChHHHHhhc-----CCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHh
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAIS-----SLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALF 310 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 310 (488)
.++|+.|++++| .++......+. ..++|++|+|++|.+++.++..+.. .+++|+.|++++| .+++.+...++
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~-~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP-VFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH-HHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH-HHHhccHhhcCCC-CCCHHHHHHHH
Confidence 578999999996 57777665554 3379999999999999988887776 6789999999997 58888777665
Q ss_pred cc--CCCCCeeEEecCCCCCCCHHHHHHHH---hcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccC
Q 011317 311 DG--TSKLQLQELDLSNLPHLSDNGILTLA---TCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYN 385 (488)
Q Consensus 311 ~~--~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 385 (488)
.. ...++|++|++++| .+++.+...++ ..+++|++|++++| .+++.++..++..+. .+++|++|++++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~-----~~~~L~~L~Ls~ 220 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLD-----RNRQLQELNVAY 220 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGG-----GCSCCCEEECCS
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHh-----cCCCcCeEECCC
Confidence 32 12278999999995 78887766654 46789999999999 799999888876554 678999999999
Q ss_pred CCCCCHHHHHHhhcc--CCCCccEEEecCCC-CHHHHHHHHh
Q 011317 386 CGGITQLAFRWLKKP--YFPRLRWLGVTGSV-NRDILDALAR 424 (488)
Q Consensus 386 ~~~i~~~~~~~l~~~--~~~~L~~L~l~~~~-~~~~~~~~~~ 424 (488)
|. +++.+...+..+ .+++|++|++++|. ....+..+..
T Consensus 221 N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 221 NG-AGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp SC-CCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 98 999877665431 37899999999996 4566666655
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=3.8e-15 Score=137.41 Aligned_cols=161 Identities=18% Similarity=0.170 Sum_probs=88.1
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 312 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 312 (488)
+..+++|++|+++++..+.......+..+++|++|++++|.++......+.. +++|+.|+++++. ++......+
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~~~~~~--- 149 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG--LAALQYLYLQDNA-LQALPDDTF--- 149 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECCSSC-CCCCCTTTT---
T ss_pred cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhC--CcCCCEEECCCCc-ccccCHhHh---
Confidence 3345566666665543244433444555666666666666554332222222 5666666666543 221100001
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHH
Q 011317 313 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL 392 (488)
Q Consensus 313 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~ 392 (488)
..+++|++|+++++ .++......+. .+++|+.|++++| .++......+. .+++|+.|++++|. ++..
T Consensus 150 ~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~---------~l~~L~~L~l~~n~-l~~~ 216 (285)
T 1ozn_A 150 RDLGNLTHLFLHGN-RISSVPERAFR-GLHSLDRLLLHQN-RVAHVHPHAFR---------DLGRLMTLYLFANN-LSAL 216 (285)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSS-CCCEECTTTTT---------TCTTCCEEECCSSC-CSCC
T ss_pred ccCCCccEEECCCC-cccccCHHHhc-CccccCEEECCCC-cccccCHhHcc---------CcccccEeeCCCCc-CCcC
Confidence 11266777777763 45422111111 4778888888887 55543222222 67788888888886 6665
Q ss_pred HHHHhhccCCCCccEEEecCCC
Q 011317 393 AFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 393 ~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
....+.. +++|+.|++++|+
T Consensus 217 ~~~~~~~--l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 217 PTEALAP--LRALQYLRLNDNP 236 (285)
T ss_dssp CHHHHTT--CTTCCEEECCSSC
T ss_pred CHHHccc--CcccCEEeccCCC
Confidence 4445544 7888888888876
No 67
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.46 E-value=5.9e-16 Score=144.66 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=55.2
Q ss_pred CCCcEEEeecCccCh--hHHHHHHhcCCCccEEeccC-CCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 68 PGIQKLCLSVDYITD--AMVGTISQGLVSLTHLDLRD-APLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 68 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
.+++.|+++++.+.. .....+ ..+++|++|++++ +. ++......++.+++|++|+++.+.-.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~---------l~~~~p~~l~~l~~L~~L~Ls~n~l~----- 114 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINN---------LVGPIPPAIAKLTQLHYLYITHTNVS----- 114 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETT---------EESCCCGGGGGCTTCSEEEEEEECCE-----
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCc---------ccccCChhHhcCCCCCEEECcCCeeC-----
Confidence 578888888776654 333333 3678888888874 42 33323344666777777777643211
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 196 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 196 (488)
..+.. ....+++|++|+++++ .+... ++..+..+++|++|+++++
T Consensus 115 ~~~p~-----~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 115 GAIPD-----FLSQIKTLVTLDFSYN-ALSGT-LPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EECCG-----GGGGCTTCCEEECCSS-EEESC-CCGGGGGCTTCCEEECCSS
T ss_pred CcCCH-----HHhCCCCCCEEeCCCC-ccCCc-CChHHhcCCCCCeEECcCC
Confidence 01111 1134666666666663 33211 1111234555555555544
No 68
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.46 E-value=2.7e-16 Score=146.96 Aligned_cols=253 Identities=12% Similarity=0.040 Sum_probs=165.8
Q ss_pred CCccEEeccCCCCCCCccccccCh--HHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCC
Q 011317 93 VSLTHLDLRDAPLIEPRITFDLTN--SGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGF 170 (488)
Q Consensus 93 ~~L~~L~L~~~~~~~~~~~~~~~~--~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 170 (488)
.++++|+++++. ++. .....+..+++|++|+++++.... ..+.. ....+++|++|+++++
T Consensus 50 ~~l~~L~L~~~~---------l~~~~~~~~~l~~l~~L~~L~L~~~n~l~----~~~p~-----~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLN---------LPKPYPIPSSLANLPYLNFLYIGGINNLV----GPIPP-----AIAKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCC---------CSSCEECCGGGGGCTTCSEEEEEEETTEE----SCCCG-----GGGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCC---------ccCCcccChhHhCCCCCCeeeCCCCCccc----ccCCh-----hHhcCCCCCEEECcCC
Confidence 689999999984 443 334568889999999997421111 01111 1246899999999984
Q ss_pred CCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC-CcCEEeccCCCC
Q 011317 171 CRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT-GIKVLDLRDCKN 249 (488)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~ 249 (488)
.+... ++..+..+++|++|+++++..... +......+++|++|+++++ .+.......+..++ +|+.|+++++ .
T Consensus 112 -~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N-~ 185 (313)
T 1ogq_A 112 -NVSGA-IPDFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRN-R 185 (313)
T ss_dssp -CCEEE-CCGGGGGCTTCCEEECCSSEEESC--CCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSS-E
T ss_pred -eeCCc-CCHHHhCCCCCCEEeCCCCccCCc--CChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCC-e
Confidence 55432 222246789999999998753211 1123457889999999985 44322223456777 9999999985 4
Q ss_pred CChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCC
Q 011317 250 LGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHL 329 (488)
Q Consensus 250 ~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l 329 (488)
+.......+..++ |+.|++++|.+.......+.. +++|+.|+++++. ++... ..+ ..+++|++|+++++ .+
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~-~~~---~~l~~L~~L~Ls~N-~l 256 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS--DKNTQKIHLAKNS-LAFDL-GKV---GLSKNLNGLDLRNN-RI 256 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT--TSCCSEEECCSSE-ECCBG-GGC---CCCTTCCEEECCSS-CC
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc--CCCCCEEECCCCc-eeeec-Ccc---cccCCCCEEECcCC-cc
Confidence 4444444566666 999999999877544443444 8999999999975 43110 011 22389999999995 56
Q ss_pred CHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCC
Q 011317 330 SDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGIT 390 (488)
Q Consensus 330 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 390 (488)
+......+. .+++|+.|++++| .++... ... . .+++|+.+++++|+.+.
T Consensus 257 ~~~~p~~l~-~l~~L~~L~Ls~N-~l~~~i-p~~-~--------~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 257 YGTLPQGLT-QLKFLHSLNVSFN-NLCGEI-PQG-G--------NLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EECCCGGGG-GCTTCCEEECCSS-EEEEEC-CCS-T--------TGGGSCGGGTCSSSEEE
T ss_pred cCcCChHHh-cCcCCCEEECcCC-cccccC-CCC-c--------cccccChHHhcCCCCcc
Confidence 522222222 6899999999999 554211 111 1 67889999999987543
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.45 E-value=1.2e-15 Score=142.27 Aligned_cols=229 Identities=17% Similarity=0.107 Sum_probs=101.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHH--HHhhhcCCCccEEEcccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSG--LQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~--l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
.++|++|+++++.+..... .....+++|++|++++|. ++..+ ...+..+++|++|+++.+.-
T Consensus 27 ~~~l~~L~L~~n~l~~i~~-~~~~~l~~L~~L~L~~n~---------l~~~~~~~~~~~~~~~L~~L~Ls~n~i------ 90 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNG---------LSFKGCCSQSDFGTTSLKYLDLSFNGV------ 90 (306)
T ss_dssp CTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSC---------CCEEEEEEHHHHSCSCCCEEECCSCSE------
T ss_pred CCCCCEEECCCCccCccCH-hHhhccccCCEEECCCCc---------cCcccCcccccccccccCEEECCCCcc------
Confidence 4577777777666553211 112356777777777763 33211 22344566777777754321
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..+... ...+++|++|+++++ .+........+..+++|++|+++++.
T Consensus 91 ~~l~~~-----~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~--------------------------- 137 (306)
T 2z66_A 91 ITMSSN-----FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH--------------------------- 137 (306)
T ss_dssp EEEEEE-----EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSC---------------------------
T ss_pred ccChhh-----cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCc---------------------------
Confidence 111110 123566666666663 33221110112344555555555443
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCCh-HHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGD-EALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD 303 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~ 303 (488)
+.......+..+++|+.|+++++ .+.. .....+..+++|++|++++|.++......+.. +++|+.|+++++. ++.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~ 213 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--LSSLQVLNMSHNN-FFS 213 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTSC-CSB
T ss_pred CCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC--CCCCCEEECCCCc-cCc
Confidence 11111112234455555555543 2221 11223344555555555555444332222222 5555555555543 221
Q ss_pred HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC-CCCCeEeecCCC
Q 011317 304 KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR-VPISELRVRQCP 353 (488)
Q Consensus 304 ~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~ 353 (488)
.....+ ..+++|++|+++++ .++......+. .+ ++|+.|++++|+
T Consensus 214 ~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~-~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 214 LDTFPY---KCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQND 259 (306)
T ss_dssp CCSGGG---TTCTTCCEEECTTS-CCCBCSSSSCC-CCCTTCCEEECTTCC
T ss_pred cChhhc---cCcccCCEeECCCC-CCcccCHHHHH-hhhccCCEEEccCCC
Confidence 100001 01256666666663 44322222122 23 367777776663
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.43 E-value=1.1e-13 Score=140.39 Aligned_cols=244 Identities=18% Similarity=0.129 Sum_probs=133.0
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|++++|.+..- ...+++|++|+|++|. ++. ++. .+++|++|+++.+. ...
T Consensus 60 ~~~L~~L~L~~N~l~~l-----p~~l~~L~~L~Ls~N~---------l~~--lp~--~l~~L~~L~Ls~N~------l~~ 115 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSL-----PALPPELRTLEVSGNQ---------LTS--LPV--LPPGLLELSIFSNP------LTH 115 (622)
T ss_dssp CTTCSEEEECSCCCSCC-----CCCCTTCCEEEECSCC---------CSC--CCC--CCTTCCEEEECSCC------CCC
T ss_pred CCCCcEEEecCCCCCCC-----CCcCCCCCEEEcCCCc---------CCc--CCC--CCCCCCEEECcCCc------CCC
Confidence 47888888887776631 1257888888888874 322 111 56788888886542 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.. .+++|+.|+++++ .++.. ...+++|++|++++|.. +. +....++|+.|+++++ .+.
T Consensus 116 l~~--------~l~~L~~L~L~~N-~l~~l-----p~~l~~L~~L~Ls~N~l-~~-----l~~~~~~L~~L~L~~N-~l~ 174 (622)
T 3g06_A 116 LPA--------LPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDNQL-AS-----LPALPSELCKLWAYNN-QLT 174 (622)
T ss_dssp CCC--------CCTTCCEEECCSS-CCSCC-----CCCCTTCCEEECCSSCC-SC-----CCCCCTTCCEEECCSS-CCS
T ss_pred CCC--------CCCCcCEEECCCC-CCCcC-----CCCCCCCCEEECcCCcC-CC-----cCCccCCCCEEECCCC-CCC
Confidence 221 3567888888774 44431 12347777777776642 21 1123457777777764 333
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
..+ ..+++|+.|+++++ .+.... ...++|+.|++++|.++... . .+++|+.|++++|. ++.
T Consensus 175 ~l~----~~~~~L~~L~Ls~N-~l~~l~----~~~~~L~~L~L~~N~l~~l~-----~-~~~~L~~L~Ls~N~-L~~--- 235 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDN-QLASLP----TLPSELYKLWAYNNRLTSLP-----A-LPSGLKELIVSGNR-LTS--- 235 (622)
T ss_dssp CCC----CCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSSCC-----C-CCTTCCEEECCSSC-CSC---
T ss_pred CCc----ccCCCCcEEECCCC-CCCCCC----CccchhhEEECcCCcccccC-----C-CCCCCCEEEccCCc-cCc---
Confidence 211 34567777777764 333211 12456777777776555321 1 24567777776653 332
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
+.. .+++|++|+++++ .++.-. ..+++|+.|++++| .++. +..-.. .+++|+.|++++|
T Consensus 236 --lp~--~l~~L~~L~Ls~N-~L~~lp-----~~~~~L~~L~Ls~N-~L~~--lp~~l~--------~l~~L~~L~L~~N 294 (622)
T 3g06_A 236 --LPV--LPSELKELMVSGN-RLTSLP-----MLPSGLLSLSVYRN-QLTR--LPESLI--------HLSSETTVNLEGN 294 (622)
T ss_dssp --CCC--CCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCCS--CCGGGG--------GSCTTCEEECCSC
T ss_pred --CCC--CCCcCcEEECCCC-CCCcCC-----cccccCcEEeCCCC-CCCc--CCHHHh--------hccccCEEEecCC
Confidence 111 1256667777663 444111 13566666666666 4441 111111 5566666666666
Q ss_pred CCCCHHHHHH
Q 011317 387 GGITQLAFRW 396 (488)
Q Consensus 387 ~~i~~~~~~~ 396 (488)
+ ++......
T Consensus 295 ~-l~~~~~~~ 303 (622)
T 3g06_A 295 P-LSERTLQA 303 (622)
T ss_dssp C-CCHHHHHH
T ss_pred C-CCCcCHHH
Confidence 6 66544443
No 71
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.43 E-value=5.1e-15 Score=139.17 Aligned_cols=126 Identities=26% Similarity=0.258 Sum_probs=73.1
Q ss_pred CCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCc
Q 011317 211 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 290 (488)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L 290 (488)
+++|++|+++++ .+... ...+..+++|++|+++++ .+... ...+..+++|++|++++|.+.......+. .+++|
T Consensus 182 l~~L~~L~L~~n-~l~~l-p~~l~~l~~L~~L~L~~N-~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L 255 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIRSL-PASIANLQNLKSLKIRNS-PLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPL 255 (328)
T ss_dssp STTCCEEEEEEE-CCCCC-CGGGGGCTTCCEEEEESS-CCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTT--CCCCC
T ss_pred CCCCCEEECcCC-CcCcc-hHhhcCCCCCCEEEccCC-CCCcC-chhhccCCCCCEEECcCCcchhhhHHHhc--CCCCC
Confidence 567777777664 33311 122556777777777775 33322 22456677777777777655433222222 37778
Q ss_pred cEEecCCCCCCC--HHHHHHHhccCCCCCeeEEecCCCCCCC--HHHHHHHHhcCCCCCeEeecCC
Q 011317 291 VKLSLRGCKRLT--DKCISALFDGTSKLQLQELDLSNLPHLS--DNGILTLATCRVPISELRVRQC 352 (488)
Q Consensus 291 ~~L~l~~~~~l~--~~~~~~l~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~L~~L~l~~~ 352 (488)
+.|++++|...+ +..+..+ ++|++|++++|+... +..+. .+++|+.+.+..+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l------~~L~~L~L~~n~~~~~iP~~l~----~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRL------TQLEKLDLRGCVNLSRLPSLIA----QLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGC------TTCCEEECTTCTTCCCCCGGGG----GSCTTCEEECCGG
T ss_pred CEEECCCCCchhhcchhhhcC------CCCCEEeCCCCCchhhccHHHh----hccCceEEeCCHH
Confidence 888887765443 2222222 778888888865443 23333 5788888887654
No 72
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.42 E-value=4.4e-13 Score=111.05 Aligned_cols=108 Identities=19% Similarity=0.339 Sum_probs=75.6
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 395 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 395 (488)
.+|++|++++|. +++.++..+. .|++|+.|++++|..++|.++..++.... .+++|++|+|++|.+||+.++.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~-----~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLEN-----LQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHH-----HHHHCCEEEEESCTTCCHHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhccc-----ccCCCCEEEcCCCCcCCHHHHH
Confidence 457778887764 7777777664 57788888888887788888777774100 1356888888888778888887
Q ss_pred HhhccCCCCccEEEecCCCC--H--HHHHHHHhhCCCceee
Q 011317 396 WLKKPYFPRLRWLGVTGSVN--R--DILDALARSRPFLNVA 432 (488)
Q Consensus 396 ~l~~~~~~~L~~L~l~~~~~--~--~~~~~~~~~~~~l~~~ 432 (488)
.+.. |++|++|++++|+. . ..+..+....|.+++.
T Consensus 134 ~L~~--~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~ 172 (176)
T 3e4g_A 134 ALHH--FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172 (176)
T ss_dssp HGGG--CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred HHhc--CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEE
Confidence 7765 78888888888762 2 2355666777777664
No 73
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.42 E-value=1.9e-13 Score=113.24 Aligned_cols=92 Identities=17% Similarity=0.307 Sum_probs=56.4
Q ss_pred CccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc---CCCCCeeEEecCCCCCCCHHHHHHHHh
Q 011317 263 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG---TSKLQLQELDLSNLPHLSDNGILTLAT 339 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~~l~~ 339 (488)
+|++|++++|.+++.++..+.. +++|++|++++|..+++.++..++.. + ++|++|+|++|.++|+.++..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~--~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~--~~L~~L~Ls~C~~ITD~Gl~~L~- 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEG--LQYVEKIRLCKCHYIEDGCLERLSQLENLQ--KSMLEMEIISCGNVTDKGIIALH- 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTT--CSCCCEEEEESCTTCCHHHHHHHHTCHHHH--HHCCEEEEESCTTCCHHHHHHGG-
T ss_pred eEeEEeCcCCCccHHHHHHhcC--CCCCCEEEeCCCCccCHHHHHHHHhccccc--CCCCEEEcCCCCcCCHHHHHHHh-
Confidence 4666666666666666655533 66666666666666666666666532 2 35666666666666666666655
Q ss_pred cCCCCCeEeecCCCCCCHHH
Q 011317 340 CRVPISELRVRQCPLIGDTS 359 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~ 359 (488)
.|++|+.|+|++|+.+++.+
T Consensus 137 ~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHH
T ss_pred cCCCCCEEECCCCCCCCchH
Confidence 35666666666666666554
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=1e-14 Score=136.56 Aligned_cols=237 Identities=13% Similarity=0.103 Sum_probs=155.8
Q ss_pred HHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHh
Q 011317 154 LMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSL 233 (488)
Q Consensus 154 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 233 (488)
.+...+++|+.|+++++ .+..... ..+..+++|++|+++++......+ ...+++|++|+++++ .+. .+
T Consensus 28 ~~~~~~~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n-~l~-----~l 95 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGN-PLSQISA-ADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNN-YVQ-----EL 95 (317)
T ss_dssp HHHTTGGGCSEEECTTS-CCCCCCH-HHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSS-EEE-----EE
T ss_pred HHhccCCCCCEEECcCC-ccCcCCH-HHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCC-ccc-----cc
Confidence 34455667888888874 5554322 234567888888888765311111 456788999999885 333 23
Q ss_pred hCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccC
Q 011317 234 ASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGT 313 (488)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 313 (488)
...++|+.|+++++ .+..... ..+++|++|++++|.++......+.. +++|+.|+++++. ++......+....
T Consensus 96 ~~~~~L~~L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~--l~~L~~L~Ls~N~-l~~~~~~~~~~~l 168 (317)
T 3o53_A 96 LVGPSIETLHAANN-NISRVSC---SRGQGKKNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNE-IDTVNFAELAASS 168 (317)
T ss_dssp EECTTCCEEECCSS-CCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGG--GSSEEEEECTTSC-CCEEEGGGGGGGT
T ss_pred cCCCCcCEEECCCC-ccCCcCc---cccCCCCEEECCCCCCCCccchhhhc--cCCCCEEECCCCC-CCcccHHHHhhcc
Confidence 35689999999986 4544332 25789999999999887654433434 8999999999964 5533222232222
Q ss_pred CCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHH
Q 011317 314 SKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 393 (488)
Q Consensus 314 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 393 (488)
++|++|+++++ .++... ... .+++|+.|++++| .++..... +. .+++|+.|++++|. ++...
T Consensus 169 --~~L~~L~L~~N-~l~~~~--~~~-~l~~L~~L~Ls~N-~l~~l~~~-~~---------~l~~L~~L~L~~N~-l~~l~ 230 (317)
T 3o53_A 169 --DTLEHLNLQYN-FIYDVK--GQV-VFAKLKTLDLSSN-KLAFMGPE-FQ---------SAAGVTWISLRNNK-LVLIE 230 (317)
T ss_dssp --TTCCEEECTTS-CCCEEE--CCC-CCTTCCEEECCSS-CCCEECGG-GG---------GGTTCSEEECTTSC-CCEEC
T ss_pred --CcCCEEECCCC-cCcccc--ccc-ccccCCEEECCCC-cCCcchhh-hc---------ccCcccEEECcCCc-ccchh
Confidence 89999999995 565321 111 4789999999999 66542211 22 67899999999997 76421
Q ss_pred HHHhhccCCCCccEEEecCCCCH-HHHHHHHhhCCCce
Q 011317 394 FRWLKKPYFPRLRWLGVTGSVNR-DILDALARSRPFLN 430 (488)
Q Consensus 394 ~~~l~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~l~ 430 (488)
..+. .+++|+.|++++|+.. ..+..+....|.++
T Consensus 231 -~~~~--~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 231 -KALR--FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp -TTCC--CCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred -hHhh--cCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 1232 4899999999999754 44444444444443
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.41 E-value=1.5e-12 Score=132.05 Aligned_cols=255 Identities=19% Similarity=0.116 Sum_probs=150.6
Q ss_pred CCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccC
Q 011317 69 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 148 (488)
Q Consensus 69 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 148 (488)
+++.|+++++.+..- .. ...++|++|++++|. ++. ++. .+++|++|+++++. ...+.
T Consensus 41 ~l~~L~ls~n~L~~l-p~---~l~~~L~~L~L~~N~---------l~~--lp~--~l~~L~~L~Ls~N~------l~~lp 97 (622)
T 3g06_A 41 GNAVLNVGESGLTTL-PD---CLPAHITTLVIPDNN---------LTS--LPA--LPPELRTLEVSGNQ------LTSLP 97 (622)
T ss_dssp CCCEEECCSSCCSCC-CS---CCCTTCSEEEECSCC---------CSC--CCC--CCTTCCEEEECSCC------CSCCC
T ss_pred CCcEEEecCCCcCcc-Ch---hhCCCCcEEEecCCC---------CCC--CCC--cCCCCCEEEcCCCc------CCcCC
Confidence 466777776555421 11 123678888888874 321 111 46788888886543 22222
Q ss_pred hHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHH
Q 011317 149 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNH 228 (488)
Q Consensus 149 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 228 (488)
. .+++|+.|+++++ .++... ..+++|+.|+++++. ++. +....++|++|+++++ .+...
T Consensus 98 ~--------~l~~L~~L~Ls~N-~l~~l~-----~~l~~L~~L~L~~N~-l~~-----lp~~l~~L~~L~Ls~N-~l~~l 156 (622)
T 3g06_A 98 V--------LPPGLLELSIFSN-PLTHLP-----ALPSGLCKLWIFGNQ-LTS-----LPVLPPGLQELSVSDN-QLASL 156 (622)
T ss_dssp C--------CCTTCCEEEECSC-CCCCCC-----CCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSS-CCSCC
T ss_pred C--------CCCCCCEEECcCC-cCCCCC-----CCCCCcCEEECCCCC-CCc-----CCCCCCCCCEEECcCC-cCCCc
Confidence 2 4677888888874 444321 146778888887764 221 1123478888888875 33321
Q ss_pred HHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHH
Q 011317 229 AIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISA 308 (488)
Q Consensus 229 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~ 308 (488)
+ ..+++|+.|+++++ .++... ..+++|+.|++++|.++... . ..++|+.|.+++|. ++.
T Consensus 157 ~----~~~~~L~~L~L~~N-~l~~l~----~~~~~L~~L~Ls~N~l~~l~-----~-~~~~L~~L~L~~N~-l~~----- 215 (622)
T 3g06_A 157 P----ALPSELCKLWAYNN-QLTSLP----MLPSGLQELSVSDNQLASLP-----T-LPSELYKLWAYNNR-LTS----- 215 (622)
T ss_dssp C----CCCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSSCCSCCC-----C-CCTTCCEEECCSSC-CSS-----
T ss_pred C----CccCCCCEEECCCC-CCCCCc----ccCCCCcEEECCCCCCCCCC-----C-ccchhhEEECcCCc-ccc-----
Confidence 1 14567888888775 343322 35677888888888766411 1 35678888887754 331
Q ss_pred HhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCC
Q 011317 309 LFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGG 388 (488)
Q Consensus 309 l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 388 (488)
+... +++|++|+++++ .++.-. ..+++|+.|++++| .++. +.. .+++|+.|++++|.
T Consensus 216 l~~~--~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~-----lp~--------~~~~L~~L~Ls~N~- 272 (622)
T 3g06_A 216 LPAL--PSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTS-----LPM--------LPSGLLSLSVYRNQ- 272 (622)
T ss_dssp CCCC--CTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSC-----CCC--------CCTTCCEEECCSSC-
T ss_pred cCCC--CCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCc-----CCc--------ccccCcEEeCCCCC-
Confidence 1111 267888888874 555311 35678888888887 5542 222 45678888888886
Q ss_pred CCHHHHHHhhccCCCCccEEEecCCC
Q 011317 389 ITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 389 i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
++.. ...+.. +++|+.|++++|+
T Consensus 273 L~~l-p~~l~~--l~~L~~L~L~~N~ 295 (622)
T 3g06_A 273 LTRL-PESLIH--LSSETTVNLEGNP 295 (622)
T ss_dssp CCSC-CGGGGG--SCTTCEEECCSCC
T ss_pred CCcC-CHHHhh--ccccCEEEecCCC
Confidence 6632 123433 7888888888886
No 76
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.41 E-value=6e-15 Score=138.67 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=110.1
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCc
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 239 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 239 (488)
++++.|+++++ .+... ... +..+++|++|+++++.. . .+......+++|++|+++++ .+... ...+..+++|
T Consensus 81 ~~l~~L~L~~n-~l~~l-p~~-l~~l~~L~~L~L~~n~l-~--~lp~~~~~l~~L~~L~Ls~n-~l~~l-p~~l~~l~~L 152 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQF-PDQ-AFRLSHLQHMTIDAAGL-M--ELPDTMQQFAGLETLTLARN-PLRAL-PASIASLNRL 152 (328)
T ss_dssp TTCCEEEEESS-CCSSC-CSC-GGGGTTCSEEEEESSCC-C--CCCSCGGGGTTCSEEEEESC-CCCCC-CGGGGGCTTC
T ss_pred cceeEEEccCC-Cchhc-Chh-hhhCCCCCEEECCCCCc-c--chhHHHhccCCCCEEECCCC-ccccC-cHHHhcCcCC
Confidence 45555555552 33311 111 12355555555555432 1 11111234456666666553 23211 1124456666
Q ss_pred CEEeccCCCCCChHHH--------HhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH--HHHHHH
Q 011317 240 KVLDLRDCKNLGDEAL--------RAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD--KCISAL 309 (488)
Q Consensus 240 ~~L~l~~~~~~~~~~~--------~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~--~~~~~l 309 (488)
++|++++|........ ..+..+++|++|++++|.++.. ...+. .+++|+.|++++|. ++. ..+.
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~l~--~l~~L~~L~L~~N~-l~~l~~~l~-- 226 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIA--NLQNLKSLKIRNSP-LSALGPAIH-- 226 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC-CGGGG--GCTTCCEEEEESSC-CCCCCGGGG--
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcc-hHhhc--CCCCCCEEEccCCC-CCcCchhhc--
Confidence 6666666433322111 0123467777777777765521 11233 36777777777754 331 1111
Q ss_pred hccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCC
Q 011317 310 FDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGI 389 (488)
Q Consensus 310 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i 389 (488)
.+++|++|++++|..... .... ...+++|+.|++++|...... ...+. .+++|++|++++|..
T Consensus 227 ----~l~~L~~L~Ls~n~~~~~-~p~~-~~~l~~L~~L~L~~n~~~~~~-p~~~~---------~l~~L~~L~L~~n~~- 289 (328)
T 4fcg_A 227 ----HLPKLEELDLRGCTALRN-YPPI-FGGRAPLKRLILKDCSNLLTL-PLDIH---------RLTQLEKLDLRGCVN- 289 (328)
T ss_dssp ----GCTTCCEEECTTCTTCCB-CCCC-TTCCCCCCEEECTTCTTCCBC-CTTGG---------GCTTCCEEECTTCTT-
T ss_pred ----cCCCCCEEECcCCcchhh-hHHH-hcCCCCCCEEECCCCCchhhc-chhhh---------cCCCCCEEeCCCCCc-
Confidence 126777777777543321 1111 125677888888877433211 11121 677888888888773
Q ss_pred CHHHHHHhhccCCCCccEEEecCCC
Q 011317 390 TQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 390 ~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.......+.. +++|+.+.+..+.
T Consensus 290 ~~~iP~~l~~--L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 290 LSRLPSLIAQ--LPANCIILVPPHL 312 (328)
T ss_dssp CCCCCGGGGG--SCTTCEEECCGGG
T ss_pred hhhccHHHhh--ccCceEEeCCHHH
Confidence 3333344443 7788888776553
No 77
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.41 E-value=3.4e-13 Score=132.39 Aligned_cols=259 Identities=15% Similarity=0.143 Sum_probs=140.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|+++.+.+..- ....++|++|++++|. ++. ++.++.+++|++|+++++. ...
T Consensus 110 ~~~L~~L~l~~n~l~~l-----~~~~~~L~~L~L~~n~---------l~~--lp~~~~l~~L~~L~l~~N~------l~~ 167 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKAL-----SDLPPLLEYLGVSNNQ---------LEK--LPELQNSSFLKIIDVDNNS------LKK 167 (454)
T ss_dssp CTTCCEEECCSSCCSCC-----CSCCTTCCEEECCSSC---------CSS--CCCCTTCTTCCEEECCSSC------CSC
T ss_pred cCCCcEEECCCCccCcc-----cCCCCCCCEEECcCCC---------CCC--CcccCCCCCCCEEECCCCc------Ccc
Confidence 46777777776665531 1122578888887773 332 2346778888888886542 112
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+.. ..++|++|+++++ .+... +. +..+++|++|+++++.. .. +....++|++|+++++ .+.
T Consensus 168 lp~--------~~~~L~~L~L~~n-~l~~l--~~-~~~l~~L~~L~l~~N~l-~~-----l~~~~~~L~~L~l~~n-~l~ 228 (454)
T 1jl5_A 168 LPD--------LPPSLEFIAAGNN-QLEEL--PE-LQNLPFLTAIYADNNSL-KK-----LPDLPLSLESIVAGNN-ILE 228 (454)
T ss_dssp CCC--------CCTTCCEEECCSS-CCSSC--CC-CTTCTTCCEEECCSSCC-SS-----CCCCCTTCCEEECCSS-CCS
T ss_pred cCC--------CcccccEEECcCC-cCCcC--cc-ccCCCCCCEEECCCCcC-Cc-----CCCCcCcccEEECcCC-cCC
Confidence 211 1347888888874 44432 22 35577888888877642 21 1122357888888775 333
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCI 306 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~ 306 (488)
.. ..+..+++|+.|+++++ .+.... ...++|+.|++++|.+... .. ..++|+.|++++|. ++.
T Consensus 229 ~l--p~~~~l~~L~~L~l~~N-~l~~l~----~~~~~L~~L~l~~N~l~~l-----~~-~~~~L~~L~ls~N~-l~~--- 291 (454)
T 1jl5_A 229 EL--PELQNLPFLTTIYADNN-LLKTLP----DLPPSLEALNVRDNYLTDL-----PE-LPQSLTFLDVSENI-FSG--- 291 (454)
T ss_dssp SC--CCCTTCTTCCEEECCSS-CCSSCC----SCCTTCCEEECCSSCCSCC-----CC-CCTTCCEEECCSSC-CSE---
T ss_pred cc--cccCCCCCCCEEECCCC-cCCccc----ccccccCEEECCCCccccc-----Cc-ccCcCCEEECcCCc-cCc---
Confidence 22 13557778888888775 333211 1236777777777765531 11 24567777777653 332
Q ss_pred HHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 307 SALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 307 ~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
+.. ..++|++|+++++ .++.- ....++|+.|++++| .++. +.. .+++|++|++++|
T Consensus 292 --l~~--~~~~L~~L~l~~N-~l~~i-----~~~~~~L~~L~Ls~N-~l~~-----lp~--------~~~~L~~L~L~~N 347 (454)
T 1jl5_A 292 --LSE--LPPNLYYLNASSN-EIRSL-----CDLPPSLEELNVSNN-KLIE-----LPA--------LPPRLERLIASFN 347 (454)
T ss_dssp --ESC--CCTTCCEEECCSS-CCSEE-----CCCCTTCCEEECCSS-CCSC-----CCC--------CCTTCCEEECCSS
T ss_pred --ccC--cCCcCCEEECcCC-cCCcc-----cCCcCcCCEEECCCC-cccc-----ccc--------cCCcCCEEECCCC
Confidence 000 1146666666663 44321 111136666666666 3432 111 3456666666666
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 387 GGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 387 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
. ++. +.. .+++|++|++++|.
T Consensus 348 ~-l~~-----lp~-~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 348 H-LAE-----VPE-LPQNLKQLHVEYNP 368 (454)
T ss_dssp C-CSC-----CCC-CCTTCCEEECCSSC
T ss_pred c-ccc-----ccc-hhhhccEEECCCCC
Confidence 5 442 111 25566666666553
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.41 E-value=1.9e-14 Score=142.70 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=20.2
Q ss_pred CCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccc
Q 011317 92 LVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRS 136 (488)
Q Consensus 92 ~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 136 (488)
+++|++|+|++|. ++......+..+++|++|+|+++
T Consensus 33 ~~~L~~L~Ls~n~---------l~~~~~~~~~~l~~L~~L~Ls~N 68 (487)
T 3oja_A 33 AWNVKELDLSGNP---------LSQISAADLAPFTKLELLNLSSN 68 (487)
T ss_dssp GGGCCEEECCSSC---------CCCCCGGGGTTCTTCCEEECTTS
T ss_pred CCCccEEEeeCCc---------CCCCCHHHHhCCCCCCEEEeeCC
Confidence 3467777776663 33333334556666666666543
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.40 E-value=7.2e-14 Score=130.50 Aligned_cols=208 Identities=16% Similarity=0.089 Sum_probs=113.6
Q ss_pred cCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHH--HHHHHHH-hCCCCceEEecCCCCCC
Q 011317 124 QHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDT--GFKTILH-SCSNLYKLRVSHGTQLT 200 (488)
Q Consensus 124 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~ 200 (488)
.+++|++|+++++.-.. .+.... +...+++|++|+++++ .+... .+..+.. .+++|++|+++++.. .
T Consensus 93 ~l~~L~~L~L~~n~l~~-----~~~~~~---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~ 162 (312)
T 1wwl_A 93 GISGLQELTLENLEVTG-----TAPPPL---LEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHS-L 162 (312)
T ss_dssp TTSCCCEEEEEEEBCBS-----CCCCCS---SSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSC-C
T ss_pred CcCCccEEEccCCcccc-----hhHHHH---HHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCC-c
Confidence 56777777776543110 011000 0134677788888773 44432 1211111 026788888876642 2
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHH-HHHh--hCCCCcCEEeccCCCCCCh---HHHHhhcCCCCccEEEeCCCcc
Q 011317 201 DLVFHDISATSLSLTHVCLRWCNLLTNHA-IKSL--ASNTGIKVLDLRDCKNLGD---EALRAISSLPQLKILLLDGSDI 274 (488)
Q Consensus 201 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l--~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~i 274 (488)
.... .....+++|++|+++++...+..+ ...+ ..+++|++|+++++ .+.. .....+..+++|++|++++|.+
T Consensus 163 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 163 NFSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred cchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 1110 123356788888888753222222 2233 57788888888875 4442 2223334677888888888876
Q ss_pred chhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCC
Q 011317 275 SDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPL 354 (488)
Q Consensus 275 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 354 (488)
+......... .+++|+.|+++++. ++ .+..... ++|++|++++ +.++... . ...+++|+.|++++| .
T Consensus 241 ~~~~~~~~~~-~l~~L~~L~Ls~N~-l~-----~ip~~~~-~~L~~L~Ls~-N~l~~~p--~-~~~l~~L~~L~L~~N-~ 307 (312)
T 1wwl_A 241 RDAAGAPSCD-WPSQLNSLNLSFTG-LK-----QVPKGLP-AKLSVLDLSY-NRLDRNP--S-PDELPQVGNLSLKGN-P 307 (312)
T ss_dssp CSSCCCSCCC-CCTTCCEEECTTSC-CS-----SCCSSCC-SEEEEEECCS-SCCCSCC--C-TTTSCEEEEEECTTC-T
T ss_pred Ccccchhhhh-hcCCCCEEECCCCc-cC-----hhhhhcc-CCceEEECCC-CCCCCCh--h-HhhCCCCCEEeccCC-C
Confidence 6533111111 35788888888754 44 1111111 6788888888 4665331 1 235788889999888 4
Q ss_pred CC
Q 011317 355 IG 356 (488)
Q Consensus 355 l~ 356 (488)
++
T Consensus 308 l~ 309 (312)
T 1wwl_A 308 FL 309 (312)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.37 E-value=4.8e-13 Score=124.50 Aligned_cols=103 Identities=25% Similarity=0.295 Sum_probs=45.1
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCC
Q 011317 159 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 238 (488)
+++|+.|+++++ .+... .. +..+++|++|+++++.. ..... ...+++|++|+++++ .+... ..+..+++
T Consensus 40 l~~L~~L~l~~~-~i~~l--~~-~~~l~~L~~L~L~~n~i-~~~~~---~~~l~~L~~L~L~~n-~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTI--EG-VQYLNNLIGLELKDNQI-TDLAP---LKNLTKITELELSGN-PLKNV--SAIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSCC-CCCGG---GTTCCSCCEEECCSC-CCSCC--GGGTTCTT
T ss_pred cCCcCEEEeeCC-CccCc--hh-hhccCCCCEEEccCCcC-CCChh---HccCCCCCEEEccCC-cCCCc--hhhcCCCC
Confidence 445666666663 33321 11 23456666666665432 11111 334455555555553 22221 12344555
Q ss_pred cCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 239 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
|+.|+++++ .+... ..+..+++|++|++++|.++
T Consensus 109 L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n~l~ 142 (308)
T 1h6u_A 109 IKTLDLTST-QITDV--TPLAGLSNLQVLYLDLNQIT 142 (308)
T ss_dssp CCEEECTTS-CCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CCEEECCCC-CCCCc--hhhcCCCCCCEEECCCCccC
Confidence 555555543 22221 12444455555555554443
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=1.5e-13 Score=128.21 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=78.0
Q ss_pred CCcEEEeecCccChhHHHHHHh--cCCCccEEeccCCCCCCCccccccChHHHHhh--hcCCCccEEEcccccccccccc
Q 011317 69 GIQKLCLSVDYITDAMVGTISQ--GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI--NQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 69 ~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l--~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
.++.+.+....+++..+..+.. .+++|++|++++|. ++......+ ..+++|++|+++++. .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~---------l~~~~~~~~~~~~~~~L~~L~Ls~n~------i 129 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK---------ITGTMPPLPLEATGLALSSLRLRNVS------W 129 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC---------CBSCCCCCSSSCCCBCCSSCEEESCC------C
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE---------eccchhhhhhhccCCCCCEEEeeccc------c
Confidence 4677777776666655544433 45678888888874 333222233 566777777776432 1
Q ss_pred cc-cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHH--HHhcCCCCCEEEecC
Q 011317 145 RR-VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHD--ISATSLSLTHVCLRW 221 (488)
Q Consensus 145 ~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~ 221 (488)
.. ........+ ..+++|++|+++++ .+... ....+..+++|++|+++++.......+.. ....+++|++|++++
T Consensus 130 ~~~~~~~~~~~~-~~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 130 ATGRSWLAELQQ-WLKPGLKVLSIAQA-HSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp SSTTSSHHHHHT-TBCSCCCEEEEECC-SSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred cchhhhhHHHHh-hhccCCCEEEeeCC-Ccchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC
Confidence 11 000111111 24667777777763 44322 11112345666666666654322222211 112445566666655
Q ss_pred CCCCCHHH---HHHhhCCCCcCEEeccCC
Q 011317 222 CNLLTNHA---IKSLASNTGIKVLDLRDC 247 (488)
Q Consensus 222 ~~~~~~~~---~~~l~~~~~L~~L~l~~~ 247 (488)
+ .+...+ ...+..+++|++|+++++
T Consensus 207 N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 207 T-GMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp S-CCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred C-CCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 3 332111 111234555555555553
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=3.2e-14 Score=141.10 Aligned_cols=191 Identities=15% Similarity=0.153 Sum_probs=101.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|+|+++.+.......+ ..+++|++|+|++|. ++... .+..+++|++|+++++. ...
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~---------l~~~~--~l~~l~~L~~L~Ls~N~------l~~ 94 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV---------LYETL--DLESLSTLRTLDLNNNY------VQE 94 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSC---------CEEEE--ECTTCTTCCEEECCSSE------EEE
T ss_pred CCCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCC---------CCCCc--ccccCCCCCEEEecCCc------CCC
Confidence 5688999999877776433333 378899999999884 33211 26778888888887542 122
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+. ..++|+.|+++++ .+..... ..+++|+.|+++++.. +... ......+++|+.|+++++ .+.
T Consensus 95 l~---------~~~~L~~L~L~~N-~l~~~~~----~~l~~L~~L~L~~N~l-~~~~-~~~~~~l~~L~~L~Ls~N-~l~ 157 (487)
T 3oja_A 95 LL---------VGPSIETLHAANN-NISRVSC----SRGQGKKNIYLANNKI-TMLR-DLDEGCRSRVQYLDLKLN-EID 157 (487)
T ss_dssp EE---------ECTTCCEEECCSS-CCCCEEE----CCCSSCEEEECCSSCC-CSGG-GBCGGGGSSEEEEECTTS-CCC
T ss_pred CC---------CCCCcCEEECcCC-cCCCCCc----cccCCCCEEECCCCCC-CCCC-chhhcCCCCCCEEECCCC-CCC
Confidence 21 2467888888874 4443211 2356677777766542 2110 001223455666666553 332
Q ss_pred HHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 227 NHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 227 ~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
......+. .+++|+.|+++++ .++.. .....+++|+.|++++|.++..... +.. +++|+.|+++++
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~--l~~L~~L~Ls~N 224 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYN-FIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQS--AAGVTWISLRNN 224 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTS-CCCEE--ECCCCCTTCCEEECCSSCCCEECGG-GGG--GTTCSEEECTTS
T ss_pred CcChHHHhhhCCcccEEecCCC-ccccc--cccccCCCCCEEECCCCCCCCCCHh-HcC--CCCccEEEecCC
Confidence 22222222 4556666666554 23222 1222455555666655554432211 222 455555555553
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.32 E-value=5e-12 Score=124.09 Aligned_cols=259 Identities=18% Similarity=0.157 Sum_probs=174.6
Q ss_pred CCCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcC-CCccEEEcccccccccccc
Q 011317 66 ILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQH-GKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 66 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~~~~~ 144 (488)
..++|++|+++++.+.. + ...+++|++|++++|. ++. +... ++|++|+++++. .
T Consensus 89 ~~~~L~~L~l~~n~l~~--l---p~~~~~L~~L~l~~n~---------l~~-----l~~~~~~L~~L~L~~n~------l 143 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTE--L---PELPQSLKSLLVDNNN---------LKA-----LSDLPPLLEYLGVSNNQ------L 143 (454)
T ss_dssp CCTTCSEEECCSSCCSS--C---CCCCTTCCEEECCSSC---------CSC-----CCSCCTTCCEEECCSSC------C
T ss_pred CcCCCCEEEccCCcCCc--c---ccccCCCcEEECCCCc---------cCc-----ccCCCCCCCEEECcCCC------C
Confidence 35789999999877665 1 1245889999999884 322 2222 689999997653 2
Q ss_pred cccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCC
Q 011317 145 RRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNL 224 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 224 (488)
..+.+ ...+++|++|+++++ .+... + ...++|++|+++++.. ... . -...+++|++|+++++ .
T Consensus 144 ~~lp~------~~~l~~L~~L~l~~N-~l~~l--p---~~~~~L~~L~L~~n~l-~~l--~-~~~~l~~L~~L~l~~N-~ 206 (454)
T 1jl5_A 144 EKLPE------LQNSSFLKIIDVDNN-SLKKL--P---DLPPSLEFIAAGNNQL-EEL--P-ELQNLPFLTAIYADNN-S 206 (454)
T ss_dssp SSCCC------CTTCTTCCEEECCSS-CCSCC--C---CCCTTCCEEECCSSCC-SSC--C-CCTTCTTCCEEECCSS-C
T ss_pred CCCcc------cCCCCCCCEEECCCC-cCccc--C---CCcccccEEECcCCcC-CcC--c-cccCCCCCCEEECCCC-c
Confidence 22321 246889999999985 55431 1 2346899999998753 221 1 1457889999999985 3
Q ss_pred CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHH
Q 011317 225 LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDK 304 (488)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~ 304 (488)
+...+ ...++|+.|+++++ .+.. +..+..+++|++|++++|.+.... . ..++|+.|++++|. ++.
T Consensus 207 l~~l~----~~~~~L~~L~l~~n-~l~~--lp~~~~l~~L~~L~l~~N~l~~l~-----~-~~~~L~~L~l~~N~-l~~- 271 (454)
T 1jl5_A 207 LKKLP----DLPLSLESIVAGNN-ILEE--LPELQNLPFLTTIYADNNLLKTLP-----D-LPPSLEALNVRDNY-LTD- 271 (454)
T ss_dssp CSSCC----CCCTTCCEEECCSS-CCSS--CCCCTTCTTCCEEECCSSCCSSCC-----S-CCTTCCEEECCSSC-CSC-
T ss_pred CCcCC----CCcCcccEEECcCC-cCCc--ccccCCCCCCCEEECCCCcCCccc-----c-cccccCEEECCCCc-ccc-
Confidence 33211 13468999999986 4443 224778999999999999776421 2 35789999999875 432
Q ss_pred HHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 305 CISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 305 ~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
+... .++|++|+++++ .++.-. ...++|+.|++++| .++. +.. ..++|++|+++
T Consensus 272 ----l~~~--~~~L~~L~ls~N-~l~~l~-----~~~~~L~~L~l~~N-~l~~-----i~~--------~~~~L~~L~Ls 325 (454)
T 1jl5_A 272 ----LPEL--PQSLTFLDVSEN-IFSGLS-----ELPPNLYYLNASSN-EIRS-----LCD--------LPPSLEELNVS 325 (454)
T ss_dssp ----CCCC--CTTCCEEECCSS-CCSEES-----CCCTTCCEEECCSS-CCSE-----ECC--------CCTTCCEEECC
T ss_pred ----cCcc--cCcCCEEECcCC-ccCccc-----CcCCcCCEEECcCC-cCCc-----ccC--------CcCcCCEEECC
Confidence 1111 278999999995 565311 12368999999999 5553 221 23589999999
Q ss_pred CCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 385 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 385 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+|. ++. +.. .+++|+.|++++|.
T Consensus 326 ~N~-l~~-----lp~-~~~~L~~L~L~~N~ 348 (454)
T 1jl5_A 326 NNK-LIE-----LPA-LPPRLERLIASFNH 348 (454)
T ss_dssp SSC-CSC-----CCC-CCTTCCEEECCSSC
T ss_pred CCc-ccc-----ccc-cCCcCCEEECCCCc
Confidence 997 653 222 47899999999985
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=1.9e-12 Score=120.43 Aligned_cols=189 Identities=24% Similarity=0.170 Sum_probs=93.7
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCc
Q 011317 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 264 (488)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 264 (488)
+++|++|+++++.. ...+ -...+++|++|+++++ .+..... +..+++|++|+++++. +... ..+..+++|
T Consensus 40 l~~L~~L~l~~~~i-~~l~---~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~-l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGV-TTIE---GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNP-LKNV--SAIAGLQSI 109 (308)
T ss_dssp HHTCCEEECTTSCC-CCCT---TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCC-CSCC--GGGTTCTTC
T ss_pred cCCcCEEEeeCCCc-cCch---hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCc-CCCc--hhhcCCCCC
Confidence 45666666665532 2111 1234566666666664 3322211 4566666666666642 3322 245556666
Q ss_pred cEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCC
Q 011317 265 KILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPI 344 (488)
Q Consensus 265 ~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 344 (488)
++|++++|.++... .+. .+++|+.|++++|. ++.... + . .+++|++|+++++ .+++... ...+++|
T Consensus 110 ~~L~l~~n~l~~~~--~l~--~l~~L~~L~l~~n~-l~~~~~--l-~--~l~~L~~L~l~~n-~l~~~~~---l~~l~~L 175 (308)
T 1h6u_A 110 KTLDLTSTQITDVT--PLA--GLSNLQVLYLDLNQ-ITNISP--L-A--GLTNLQYLSIGNA-QVSDLTP---LANLSKL 175 (308)
T ss_dssp CEEECTTSCCCCCG--GGT--TCTTCCEEECCSSC-CCCCGG--G-G--GCTTCCEEECCSS-CCCCCGG---GTTCTTC
T ss_pred CEEECCCCCCCCch--hhc--CCCCCCEEECCCCc-cCcCcc--c-c--CCCCccEEEccCC-cCCCChh---hcCCCCC
Confidence 66666666554422 122 36666666666643 321110 1 1 1156666666663 4432111 2245666
Q ss_pred CeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 345 SELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 345 ~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+.|++++| .+++... +. .+++|++|++++|. +++.. .+. .+++|+.|++++|.
T Consensus 176 ~~L~l~~n-~l~~~~~--l~---------~l~~L~~L~L~~N~-l~~~~--~l~--~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 176 TTLKADDN-KISDISP--LA---------SLPNLIEVHLKNNQ-ISDVS--PLA--NTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECCSS-CCCCCGG--GG---------GCTTCCEEECTTSC-CCBCG--GGT--TCTTCCEEEEEEEE
T ss_pred CEEECCCC-ccCcChh--hc---------CCCCCCEEEccCCc-cCccc--ccc--CCCCCCEEEccCCe
Confidence 66666666 4433221 11 55666666666665 44422 232 36666666666654
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.28 E-value=1.1e-12 Score=122.51 Aligned_cols=208 Identities=16% Similarity=0.140 Sum_probs=132.4
Q ss_pred cCCCccEEeccCCCCCCCccccccChHHHHhh--hcCCCccEEEcccccccccccccccChHHHHHHHH-hCCCCCEEEE
Q 011317 91 GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQI--NQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMAD-KCASMESICL 167 (488)
Q Consensus 91 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~-~~~~L~~L~l 167 (488)
.+++|++|++++|. ++......+ ..+++|++|+++++. ...+. ..+..+.. .+++|++|++
T Consensus 93 ~l~~L~~L~L~~n~---------l~~~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~-~~~~~l~~~~~~~L~~L~L 156 (312)
T 1wwl_A 93 GISGLQELTLENLE---------VTGTAPPPLLEATGPDLNILNLRNVS------WATRD-AWLAELQQWLKPGLKVLSI 156 (312)
T ss_dssp TTSCCCEEEEEEEB---------CBSCCCCCSSSCCSCCCSEEEEESCB------CSSSS-SHHHHHHTTCCTTCCEEEE
T ss_pred CcCCccEEEccCCc---------ccchhHHHHHHhcCCCccEEEccCCC------Ccchh-HHHHHHHHhhcCCCcEEEe
Confidence 58899999998874 443222333 678899999997543 22221 22222221 1388999999
Q ss_pred cCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHH--hcCCCCCEEEecCCCCCC---HHHHHHhhCCCCcCEE
Q 011317 168 GGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDIS--ATSLSLTHVCLRWCNLLT---NHAIKSLASNTGIKVL 242 (488)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L 242 (488)
+++ .+....... +..+++|++|+++++......++.... ..+++|++|+++++ .+. ......+..+++|+.|
T Consensus 157 ~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 157 AQA-HSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp ESC-SCCCCCTTT-CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEE
T ss_pred eCC-CCccchHHH-hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEE
Confidence 984 555432222 356889999999987644333332222 57789999999985 555 3333334578999999
Q ss_pred eccCCCCCChHH-HHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEE
Q 011317 243 DLRDCKNLGDEA-LRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQEL 321 (488)
Q Consensus 243 ~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L 321 (488)
+++++ .+.... ...+..+++|++|++++|.++... ..-.++|+.|+++++. ++... .+ ..+++|++|
T Consensus 234 ~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-----~~~~~~L~~L~Ls~N~-l~~~p--~~---~~l~~L~~L 301 (312)
T 1wwl_A 234 DLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP-----KGLPAKLSVLDLSYNR-LDRNP--SP---DELPQVGNL 301 (312)
T ss_dssp ECTTS-CCCSSCCCSCCCCCTTCCEEECTTSCCSSCC-----SSCCSEEEEEECCSSC-CCSCC--CT---TTSCEEEEE
T ss_pred ECCCC-cCCcccchhhhhhcCCCCEEECCCCccChhh-----hhccCCceEEECCCCC-CCCCh--hH---hhCCCCCEE
Confidence 99986 454433 334456789999999999877321 1012689999999864 55321 11 123899999
Q ss_pred ecCCCCCCC
Q 011317 322 DLSNLPHLS 330 (488)
Q Consensus 322 ~l~~~~~l~ 330 (488)
++++ +.++
T Consensus 302 ~L~~-N~l~ 309 (312)
T 1wwl_A 302 SLKG-NPFL 309 (312)
T ss_dssp ECTT-CTTT
T ss_pred eccC-CCCC
Confidence 9998 4555
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.28 E-value=3e-13 Score=123.46 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=79.8
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCC
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTS 314 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 314 (488)
.+++|++|+++++ .+.......+..+++|++|++++|.+.......+.. +++|+.|+++++. ++......+ ..
T Consensus 59 ~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~~~~~~---~~ 131 (270)
T 2o6q_A 59 RLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ--LVNLAELRLDRNQ-LKSLPPRVF---DS 131 (270)
T ss_dssp SCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT--CSSCCEEECCSSC-CCCCCTTTT---TT
T ss_pred CCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc--ccCCCEEECCCCc-cCeeCHHHh---Cc
Confidence 4555555555543 233322233345555555555555444322222222 5556666665542 221100000 11
Q ss_pred CCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH
Q 011317 315 KLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 394 (488)
Q Consensus 315 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 394 (488)
+++|++|+++++ .++......+ ..+++|+.|++++| .++......+. .+++|++|++++|. ++....
T Consensus 132 l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~ 198 (270)
T 2o6q_A 132 LTKLTYLSLGYN-ELQSLPKGVF-DKLTSLKELRLYNN-QLKRVPEGAFD---------KLTELKTLKLDNNQ-LKRVPE 198 (270)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSSC-CSCCCT
T ss_pred CcCCCEEECCCC-cCCccCHhHc-cCCcccceeEecCC-cCcEeChhHhc---------cCCCcCEEECCCCc-CCcCCH
Confidence 266777777663 4442111111 24678888888777 44432211111 56788888888886 654333
Q ss_pred HHhhccCCCCccEEEecCCC
Q 011317 395 RWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 395 ~~l~~~~~~~L~~L~l~~~~ 414 (488)
..+. .+++|+.|++++|+
T Consensus 199 ~~~~--~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 199 GAFD--SLEKLKMLQLQENP 216 (270)
T ss_dssp TTTT--TCTTCCEEECCSSC
T ss_pred HHhc--cccCCCEEEecCCC
Confidence 3333 37888888888775
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.27 E-value=1.1e-12 Score=122.46 Aligned_cols=229 Identities=18% Similarity=0.163 Sum_probs=150.8
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHH--hCCCCceEEecCCCCCCHHHHHHHH-hcCCCCCEEEecCCCCCCH----HHHH
Q 011317 159 CASMESICLGGFCRVTDTGFKTILH--SCSNLYKLRVSHGTQLTDLVFHDIS-ATSLSLTHVCLRWCNLLTN----HAIK 231 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~----~~~~ 231 (488)
...++.+.+.++ .++...+..+.. .+++|++|+++++..... ....+. ..+++|++|+++++ .+.. ....
T Consensus 63 ~~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNV-SWATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHH
T ss_pred hcceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecc-cccchhhhhHHH
Confidence 346889999985 666655554433 347799999998753211 111111 56789999999985 4432 2223
Q ss_pred HhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchh-HHHH-HHhhcCCCccEEecCCCCCCC--HHHHH
Q 011317 232 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDV-GVSY-LRLTVITSLVKLSLRGCKRLT--DKCIS 307 (488)
Q Consensus 232 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~-l~~~~~~~L~~L~l~~~~~l~--~~~~~ 307 (488)
.+..+++|++|+++++ .+.......+..+++|++|++++|.+... ++.. .....+++|++|++++|. ++ +....
T Consensus 140 ~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~ 217 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCA 217 (310)
T ss_dssp HTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHH
T ss_pred HhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHH
Confidence 4558999999999986 56655566777899999999999986543 2211 111158899999999975 55 22222
Q ss_pred HHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC---CCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEecc
Q 011317 308 ALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR---VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLY 384 (488)
Q Consensus 308 ~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~ 384 (488)
.+.... ++|++|+++++ .++......+. .+ ++|+.|++++| .++. +... -.++|+.|+++
T Consensus 218 ~l~~~l--~~L~~L~Ls~N-~l~~~~p~~~~-~~~~~~~L~~L~Ls~N-~l~~-----lp~~-------~~~~L~~L~Ls 280 (310)
T 4glp_A 218 ALAAAG--VQPHSLDLSHN-SLRATVNPSAP-RCMWSSALNSLNLSFA-GLEQ-----VPKG-------LPAKLRVLDLS 280 (310)
T ss_dssp HHHHHT--CCCSSEECTTS-CCCCCCCSCCS-SCCCCTTCCCEECCSS-CCCS-----CCSC-------CCSCCSCEECC
T ss_pred HHHhcC--CCCCEEECCCC-CCCccchhhHH-hccCcCcCCEEECCCC-CCCc-----hhhh-------hcCCCCEEECC
Confidence 222222 89999999994 66543211111 23 79999999999 6652 2221 34789999999
Q ss_pred CCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 385 NCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 385 ~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+|. ++.. ..+. .+++|+.|++++|+
T Consensus 281 ~N~-l~~~--~~~~--~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 281 SNR-LNRA--PQPD--ELPEVDNLTLDGNP 305 (310)
T ss_dssp SCC-CCSC--CCTT--SCCCCSCEECSSTT
T ss_pred CCc-CCCC--chhh--hCCCccEEECcCCC
Confidence 998 7643 2233 48999999999886
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=5.5e-13 Score=122.22 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=56.9
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 90 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCE---------IQTIEDGAYQSLSHLSTLILTGNP------IQS 90 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTCC---------CCEECTTTTTTCTTCCEEECTTCC------CCE
T ss_pred CCCccEEECCCCcccccCHhHh-ccccCCcEEECCCCc---------CCccCHHHccCCcCCCEEECCCCc------cCc
Confidence 3568888888776665332223 357888888888873 333233345667777777776432 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 196 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 196 (488)
+... ....+++|++|+++++ .+....... +..+++|++|+++++
T Consensus 91 ~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n 134 (276)
T 2z62_A 91 LALG----AFSGLSSLQKLVAVET-NLASLENFP-IGHLKTLKELNVAHN 134 (276)
T ss_dssp ECTT----TTTTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSS
T ss_pred cChh----hhcCCccccEEECCCC-CccccCchh-cccCCCCCEEECcCC
Confidence 1111 1134566777777663 332211100 233455555555544
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.24 E-value=2.3e-13 Score=124.76 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=72.8
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH----HHHHHHh
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD----KCISALF 310 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~----~~~~~l~ 310 (488)
.+++|++|+++++ .+.......+..+++|++|++++|.+.......+. .+++|+.|+++++. ++. ..+..+
T Consensus 74 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~-l~~~~l~~~~~~l- 148 (276)
T 2z62_A 74 SLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNL-IQSFKLPEYFSNL- 148 (276)
T ss_dssp TCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCT--TCTTCCEEECCSSC-CCCCCCCGGGGGC-
T ss_pred CCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCCccccCchhcc--cCCCCCEEECcCCc-cceecCchhhccC-
Confidence 4455555555543 33333333444555555555555544332211122 25555555555542 221 111111
Q ss_pred ccCCCCCeeEEecCCCCCCCH---HHHHHHHhcCCCCC-eEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCC
Q 011317 311 DGTSKLQLQELDLSNLPHLSD---NGILTLATCRVPIS-ELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNC 386 (488)
Q Consensus 311 ~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 386 (488)
++|++|+++++ .++. ..+..+. .++.|. .|++++| .++...... + ...+|+.|++++|
T Consensus 149 -----~~L~~L~Ls~N-~l~~~~~~~~~~l~-~L~~l~l~L~ls~n-~l~~~~~~~-----~-----~~~~L~~L~L~~n 210 (276)
T 2z62_A 149 -----TNLEHLDLSSN-KIQSIYCTDLRVLH-QMPLLNLSLDLSLN-PMNFIQPGA-----F-----KEIRLKELALDTN 210 (276)
T ss_dssp -----TTCCEEECCSS-CCCEECGGGGHHHH-TCTTCCEEEECCSS-CCCEECTTS-----S-----CSCCEEEEECCSS
T ss_pred -----CCCCEEECCCC-CCCcCCHHHhhhhh-hccccceeeecCCC-cccccCccc-----c-----CCCcccEEECCCC
Confidence 56666666663 4432 2233222 233333 6777776 444211100 0 3346788888877
Q ss_pred CCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 387 GGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 387 ~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
. ++......+. .+++|+.|++++|+
T Consensus 211 ~-l~~~~~~~~~--~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 211 Q-LKSVPDGIFD--RLTSLQKIWLHTNP 235 (276)
T ss_dssp C-CSCCCTTTTT--TCCSCCEEECCSSC
T ss_pred c-eeecCHhHhc--ccccccEEEccCCc
Confidence 6 5543322233 37788888887654
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.23 E-value=2.3e-12 Score=117.59 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=46.3
Q ss_pred CCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccC
Q 011317 69 GIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN 148 (488)
Q Consensus 69 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 148 (488)
..+.++++++.+..- .. ...++|++|++++|. ++......+..+++|++|+++++. ...+.
T Consensus 17 ~~~~l~~~~~~l~~i-p~---~~~~~l~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~n~------l~~i~ 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PS---NIPADTKKLDLQSNK---------LSSLPSKAFHRLTKLRLLYLNDNK------LQTLP 77 (270)
T ss_dssp TTTEEECTTSCCSSC-CS---CCCTTCSEEECCSSC---------CSCCCTTSSSSCTTCCEEECCSSC------CSCCC
T ss_pred CCCEEEccCCCCCcc-CC---CCCCCCCEEECcCCC---------CCeeCHHHhcCCCCCCEEECCCCc------cCeeC
Confidence 455566655444421 00 013456777776663 333222335556666666665432 11121
Q ss_pred hHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCC
Q 011317 149 DLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHG 196 (488)
Q Consensus 149 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 196 (488)
.. .+..+++|++|+++++ .+.... ...+..+++|++|+++++
T Consensus 78 ~~----~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 78 AG----IFKELKNLETLWVTDN-KLQALP-IGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp TT----TTSSCTTCCEEECCSS-CCCCCC-TTTTTTCSSCCEEECCSS
T ss_pred hh----hhcCCCCCCEEECCCC-cCCcCC-HhHcccccCCCEEECCCC
Confidence 11 1133556666666653 333221 111233555555555544
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.23 E-value=9.3e-13 Score=120.32 Aligned_cols=156 Identities=20% Similarity=0.131 Sum_probs=72.3
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
.+++|++|+++++ .+.. +..+..+++|++|+++++ .+.......+..+++|++|++++|.++......+.. +++
T Consensus 61 ~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~ 134 (272)
T 3rfs_A 61 YLPNVRYLALGGN-KLHD--ISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK--LTN 134 (272)
T ss_dssp GCTTCCEEECTTS-CCCC--CGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTT
T ss_pred cCCCCcEEECCCC-CCCC--chhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc--CCC
Confidence 3445555555443 2221 123445566666666654 344333334455666666666666554322222222 556
Q ss_pred ccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHccccc
Q 011317 290 LVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVD 369 (488)
Q Consensus 290 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 369 (488)
|+.|++++|. ++......+ . .+++|++|+++++ .++..... ....+++|+.|++++| .++......+.
T Consensus 135 L~~L~L~~n~-l~~~~~~~~-~--~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~----- 202 (272)
T 3rfs_A 135 LTYLNLAHNQ-LQSLPKGVF-D--KLTNLTELDLSYN-QLQSLPEG-VFDKLTQLKDLRLYQN-QLKSVPDGVFD----- 202 (272)
T ss_dssp CCEEECCSSC-CCCCCTTTT-T--TCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTT-----
T ss_pred CCEEECCCCc-cCccCHHHh-c--cCccCCEEECCCC-CcCccCHH-HhcCCccCCEEECCCC-cCCccCHHHHh-----
Confidence 6666666542 321000000 1 1256666666663 34321111 1114566777777666 44321111111
Q ss_pred CCCCCCCCccEEeccCCC
Q 011317 370 DDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 370 ~~~~~~~~L~~L~l~~~~ 387 (488)
.+++|+.|++++|+
T Consensus 203 ----~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 203 ----RLTSLQYIWLHDNP 216 (272)
T ss_dssp ----TCTTCCEEECCSSC
T ss_pred ----CCcCCCEEEccCCC
Confidence 56667777777665
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.19 E-value=4.2e-12 Score=115.93 Aligned_cols=177 Identities=15% Similarity=0.163 Sum_probs=121.2
Q ss_pred CCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCc
Q 011317 211 SLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 290 (488)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L 290 (488)
+++|+.|.+.++ .+.. +..+..+++|++|+++++ .+.. +..+..+++|++|++++|.++......+.. +++|
T Consensus 40 l~~L~~L~l~~~-~i~~--~~~l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L 111 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKS--VQGIQYLPNVRYLALGGN-KLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDK--LTNL 111 (272)
T ss_dssp HTTCCEEECTTS-CCCC--CTTGGGCTTCCEEECTTS-CCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTT--CTTC
T ss_pred ccceeeeeeCCC-Cccc--ccccccCCCCcEEECCCC-CCCC--chhhcCCCCCCEEECCCCccCccChhHhcC--CcCC
Confidence 357777777764 2322 223668999999999996 4544 346779999999999999887544333334 8999
Q ss_pred cEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccC
Q 011317 291 VKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDD 370 (488)
Q Consensus 291 ~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 370 (488)
+.|++++|. ++......+ ..+++|++|+++++ .++...... ...+++|+.|++++| .++......+.
T Consensus 112 ~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~------ 178 (272)
T 3rfs_A 112 KELVLVENQ-LQSLPDGVF---DKLTNLTYLNLAHN-QLQSLPKGV-FDKLTNLTELDLSYN-QLQSLPEGVFD------ 178 (272)
T ss_dssp CEEECTTSC-CCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT------
T ss_pred CEEECCCCc-CCccCHHHh---ccCCCCCEEECCCC-ccCccCHHH-hccCccCCEEECCCC-CcCccCHHHhc------
Confidence 999999975 442111011 12389999999995 565322111 226899999999999 66532221122
Q ss_pred CCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 371 DRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 371 ~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++......+. .+++|+.|++++|+
T Consensus 179 ---~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 179 ---KLTQLKDLRLYQNQ-LKSVPDGVFD--RLTSLQYIWLHDNP 216 (272)
T ss_dssp ---TCTTCCEEECCSSC-CSCCCTTTTT--TCTTCCEEECCSSC
T ss_pred ---CCccCCEEECCCCc-CCccCHHHHh--CCcCCCEEEccCCC
Confidence 68999999999998 7654333344 48999999999875
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=7.4e-12 Score=108.32 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=46.5
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCc
Q 011317 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 264 (488)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 264 (488)
+++|++|+++++. +...+ -...+++|++|+++++ .+... ..+..+++|++|+++++ .+.......+..+++|
T Consensus 43 l~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~l~~n-~~~~~--~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTDLT---GIEYAHNIKDLTINNI-HATNY--NPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSC-CSCCT---TGGGCTTCSEEEEESC-CCSCC--GGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred cCCccEEeccCCC-ccChH---HHhcCCCCCEEEccCC-CCCcc--hhhhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence 4556666666543 22111 1234455555555554 22211 12334555555555553 3333333344445555
Q ss_pred cEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 265 KILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 265 ~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
++|++++|.+++.....+.. +++|+.|++++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~--l~~L~~L~L~~n 146 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINT--LPKVNSIDLSYN 146 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTT--CSSCCEEECCSC
T ss_pred CEEEecCCccCcHhHHHHhh--CCCCCEEEccCC
Confidence 55555555554433333333 444444444443
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.16 E-value=3.4e-12 Score=114.23 Aligned_cols=184 Identities=11% Similarity=0.059 Sum_probs=90.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|+++.+.+.......+ ..+++|++|++++|.. ++......+..+++|++|+++++.. ...
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~n~~--------l~~i~~~~f~~l~~L~~L~l~~~n~-----l~~ 95 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDVT--------LQQLESHSFYNLSKVTHIEIRNTRN-----LTY 95 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTT-TTCTTCCEEEEECCSS--------CCEECTTTEESCTTCCEEEEEEETT-----CCE
T ss_pred CCcccEEEEeCCcceEECHHHc-cCCCCCcEEeCCCCCC--------cceeCHhHcCCCcCCcEEECCCCCC-----eeE
Confidence 4578888888777665332222 3688888888888731 3322223456778888888864211 112
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCc---eEEecCCCCCCHHHHHHHHhcCCCCC-EEEecCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLY---KLRVSHGTQLTDLVFHDISATSLSLT-HVCLRWC 222 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~ 222 (488)
+... .+..+++|+.|+++++ .+... +. +..+++|+ .|+++++..+...+. .....+++|+ +|+++++
T Consensus 96 i~~~----~f~~l~~L~~L~l~~n-~l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 96 IDPD----ALKELPLLKFLGIFNT-GLKMF--PD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp ECTT----SEECCTTCCEEEEEEE-CCCSC--CC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC
T ss_pred cCHH----HhCCCCCCCEEeCCCC-CCccc--cc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC
Confidence 2111 1134677888888773 44321 11 23455565 667666522221110 0122344555 5555542
Q ss_pred CCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCC-CCccEEEeCCCccc
Q 011317 223 NLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSL-PQLKILLLDGSDIS 275 (488)
Q Consensus 223 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~i~ 275 (488)
.+...+...+.. ++|+.|+++++..+.......+..+ ++|+.|++++|.++
T Consensus 167 -~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 167 -GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp -CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred -CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 222111111112 4555555555322333333334444 55555555555443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.16 E-value=4.2e-11 Score=110.34 Aligned_cols=100 Identities=22% Similarity=0.197 Sum_probs=51.3
Q ss_pred CCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCc
Q 011317 185 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQL 264 (488)
Q Consensus 185 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 264 (488)
+++|+.|+++++.. .... -...+++|++|+++++ .+..... +..+++|+.|+++++ .+.. +..+..+++|
T Consensus 45 l~~L~~L~l~~~~i-~~~~---~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDI-KSVQ---GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-KVKD--LSSLKDLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCC-CCCT---TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCC--GGGGTTCTTC
T ss_pred cCcccEEEccCCCc-ccCh---hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC-cCCC--ChhhccCCCC
Confidence 56677777776542 2111 1334566666666664 3322211 456666666666664 3332 2235556666
Q ss_pred cEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 265 KILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 265 ~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
++|++++|.+... ..+. .+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~--~l~~L~~L~l~~n 144 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLV--HLPQLESLYLGNN 144 (291)
T ss_dssp CEEECTTSCCCCC--GGGG--GCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhc--CCCCCCEEEccCC
Confidence 6666666655442 1122 2555555555554
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.16 E-value=3.4e-11 Score=104.13 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=89.9
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCcc
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLV 291 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~ 291 (488)
++|++|+++++ .+...+ .+..+++|++|+++++ .+.. +..+..+++|++|++++|.++......+.. +++|+
T Consensus 44 ~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~l~~n-~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~ 115 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT--GIEYAHNIKDLTINNI-HATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSG--LTSLT 115 (197)
T ss_dssp HTCCEEEEESS-CCSCCT--TGGGCTTCSEEEEESC-CCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTT--CTTCC
T ss_pred CCccEEeccCC-CccChH--HHhcCCCCCEEEccCC-CCCc--chhhhcCCCCCEEEeECCccCcccChhhcC--CCCCC
Confidence 47777777774 343222 3556777788887776 3332 235667777788888777776544444444 77778
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCC
Q 011317 292 KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDD 371 (488)
Q Consensus 292 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 371 (488)
.|++++|. ++......+. .+++|++|++++|..+++.. . ...+++|+.|++++| .+++.. .+.
T Consensus 116 ~L~Ls~n~-i~~~~~~~l~---~l~~L~~L~L~~n~~i~~~~--~-l~~l~~L~~L~l~~n-~i~~~~--~l~------- 178 (197)
T 4ezg_A 116 LLDISHSA-HDDSILTKIN---TLPKVNSIDLSYNGAITDIM--P-LKTLPELKSLNIQFD-GVHDYR--GIE------- 178 (197)
T ss_dssp EEECCSSB-CBGGGHHHHT---TCSSCCEEECCSCTBCCCCG--G-GGGCSSCCEEECTTB-CCCCCT--TGG-------
T ss_pred EEEecCCc-cCcHhHHHHh---hCCCCCEEEccCCCCccccH--h-hcCCCCCCEEECCCC-CCcChH--Hhc-------
Confidence 88877753 5543333332 22677788887754344321 1 225777888888777 555422 222
Q ss_pred CCCCCCccEEeccCCC
Q 011317 372 RWYGSSIRLLDLYNCG 387 (488)
Q Consensus 372 ~~~~~~L~~L~l~~~~ 387 (488)
.+++|+.|++++|+
T Consensus 179 --~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 179 --DFPKLNQLYAFSQT 192 (197)
T ss_dssp --GCSSCCEEEECBC-
T ss_pred --cCCCCCEEEeeCcc
Confidence 56778888887776
No 97
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.15 E-value=1.7e-10 Score=108.80 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=37.0
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecC
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLR 296 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~ 296 (488)
+..+|+|+.|.++++..+. +..+ .+++|++|.|..|.++...+..+....+|+|+.|+++
T Consensus 168 l~~~P~L~~L~L~g~~~l~---l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLS---IGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCB---CCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCce---eccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3456777777776642211 1112 3667777777777777777766664347777777764
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.10 E-value=6.2e-11 Score=109.19 Aligned_cols=103 Identities=22% Similarity=0.276 Sum_probs=44.6
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCC
Q 011317 159 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 238 (488)
+++|+.|+++++ .+... .. +..+++|++|+++++.. .... . ...+++|++|+++++ .+.. +..+..+++
T Consensus 45 l~~L~~L~l~~~-~i~~~--~~-~~~l~~L~~L~L~~n~l-~~~~--~-l~~l~~L~~L~l~~n-~l~~--~~~l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNKL-TDIK--P-LANLKNLGWLFLDEN-KVKD--LSSLKDLKK 113 (291)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSCC-CCCG--G-GTTCTTCCEEECCSS-CCCC--GGGGTTCTT
T ss_pred cCcccEEEccCC-CcccC--hh-HhcCCCCCEEEccCCcc-CCCc--c-cccCCCCCEEECCCC-cCCC--ChhhccCCC
Confidence 344555555553 33221 11 23355555555554432 1111 0 334455555555553 2222 112445555
Q ss_pred cCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 239 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
|++|+++++ .+... ..+..+++|+.|++++|.++
T Consensus 114 L~~L~L~~n-~i~~~--~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 114 LKSLSLEHN-GISDI--NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp CCEEECTTS-CCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred CCEEECCCC-cCCCC--hhhcCCCCCCEEEccCCcCC
Confidence 555555553 23221 23445555555555555444
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.09 E-value=5.2e-11 Score=120.52 Aligned_cols=169 Identities=22% Similarity=0.232 Sum_probs=114.7
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCC
Q 011317 183 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 262 (488)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 262 (488)
..+++|+.|+++++.. ...+ -...+++|+.|+++++ .+.... .+..+++|+.|+|+++ .+.. +..+..++
T Consensus 40 ~~L~~L~~L~l~~n~i-~~l~---~l~~l~~L~~L~Ls~N-~l~~~~--~l~~l~~L~~L~Ls~N-~l~~--l~~l~~l~ 109 (605)
T 1m9s_A 40 NELNSIDQIIANNSDI-KSVQ---GIQYLPNVTKLFLNGN-KLTDIK--PLTNLKNLGWLFLDEN-KIKD--LSSLKDLK 109 (605)
T ss_dssp HHHTTCCCCBCTTCCC-CCCT---TGGGCTTCCEEECTTS-CCCCCG--GGGGCTTCCEEECCSS-CCCC--CTTSTTCT
T ss_pred hcCCCCCEEECcCCCC-CCCh---HHccCCCCCEEEeeCC-CCCCCh--hhccCCCCCEEECcCC-CCCC--ChhhccCC
Confidence 3468899999987653 2211 1457889999999986 343322 2678999999999986 4443 33677889
Q ss_pred CccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCC
Q 011317 263 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRV 342 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 342 (488)
+|+.|+|++|.+... ..+. .+++|+.|++++|. ++.. ..+ . .+++|+.|+|++| .++.... ...++
T Consensus 110 ~L~~L~Ls~N~l~~l--~~l~--~l~~L~~L~Ls~N~-l~~l--~~l-~--~l~~L~~L~Ls~N-~l~~~~~---l~~l~ 175 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI--NGLV--HLPQLESLYLGNNK-ITDI--TVL-S--RLTKLDTLSLEDN-QISDIVP---LAGLT 175 (605)
T ss_dssp TCCEEECTTSCCCCC--GGGG--GCTTCSEEECCSSC-CCCC--GGG-G--SCTTCSEEECCSS-CCCCCGG---GTTCT
T ss_pred CCCEEEecCCCCCCC--cccc--CCCccCEEECCCCc-cCCc--hhh-c--ccCCCCEEECcCC-cCCCchh---hccCC
Confidence 999999999877753 2233 38889999998864 4432 112 1 2378888888885 5553221 33688
Q ss_pred CCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 343 PISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 343 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
+|+.|+|++| .+++. ..+. .+++|+.|++++|+
T Consensus 176 ~L~~L~Ls~N-~i~~l--~~l~---------~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 176 KLQNLYLSKN-HISDL--RALA---------GLKNLDVLELFSQE 208 (605)
T ss_dssp TCCEEECCSS-CCCBC--GGGT---------TCTTCSEEECCSEE
T ss_pred CCCEEECcCC-CCCCC--hHHc---------cCCCCCEEEccCCc
Confidence 8888888888 66653 2222 67888888888886
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.09 E-value=3.9e-12 Score=113.78 Aligned_cols=201 Identities=15% Similarity=0.053 Sum_probs=96.8
Q ss_pred CCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCC
Q 011317 93 VSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCR 172 (488)
Q Consensus 93 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 172 (488)
++|++|++++|. ++......+..+++|++|+++++.. ...+.... +..+++|++|++++|+.
T Consensus 31 ~~l~~L~l~~n~---------l~~i~~~~~~~l~~L~~L~l~~n~~-----l~~i~~~~----f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 31 PSTQTLKLIETH---------LRTIPSHAFSNLPNISRIYVSIDVT-----LQQLESHS----FYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp TTCCEEEEESCC---------CSEECTTTTTTCTTCCEEEEECCSS-----CCEECTTT----EESCTTCCEEEEEEETT
T ss_pred CcccEEEEeCCc---------ceEECHHHccCCCCCcEEeCCCCCC-----cceeCHhH----cCCCcCCcEEECCCCCC
Confidence 478889998874 4443333466777888888865421 11122111 13466777777776434
Q ss_pred CCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcC---EEeccCCCC
Q 011317 173 VTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIK---VLDLRDCKN 249 (488)
Q Consensus 173 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~ 249 (488)
+.... ...+..+++|++|+++++.. .. +. .+..+++|+ .|+++++..
T Consensus 93 l~~i~-~~~f~~l~~L~~L~l~~n~l-~~--lp--------------------------~~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 93 LTYID-PDALKELPLLKFLGIFNTGL-KM--FP--------------------------DLTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp CCEEC-TTSEECCTTCCEEEEEEECC-CS--CC--------------------------CCTTCCBCCSEEEEEEESCTT
T ss_pred eeEcC-HHHhCCCCCCCEEeCCCCCC-cc--cc--------------------------ccccccccccccEEECCCCcc
Confidence 44321 11123456666666665431 11 00 022334444 555555423
Q ss_pred CChHHHHhhcCCCCcc-EEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC-CCeeEEecCCCC
Q 011317 250 LGDEALRAISSLPQLK-ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK-LQLQELDLSNLP 327 (488)
Q Consensus 250 ~~~~~~~~l~~~~~L~-~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-~~L~~L~l~~~~ 327 (488)
+.......+..+++|+ .|++++|.++..... ... .++|+.|+++++..++......+. .+ ++|++|++++ +
T Consensus 143 l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~-~~~--~~~L~~L~L~~n~~l~~i~~~~~~---~l~~~L~~L~l~~-N 215 (239)
T 2xwt_C 143 MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY-AFN--GTKLDAVYLNKNKYLTVIDKDAFG---GVYSGPSLLDVSQ-T 215 (239)
T ss_dssp CCEECTTTTTTTBSSEEEEECCSCCCCEECTT-TTT--TCEEEEEECTTCTTCCEECTTTTT---TCSBCCSEEECTT-C
T ss_pred hhhcCcccccchhcceeEEEcCCCCCcccCHh-hcC--CCCCCEEEcCCCCCcccCCHHHhh---ccccCCcEEECCC-C
Confidence 4433333445556666 666666554422211 111 245666666665323311111111 12 4666666666 3
Q ss_pred CCCHHHHHHHHhcCCCCCeEeecCC
Q 011317 328 HLSDNGILTLATCRVPISELRVRQC 352 (488)
Q Consensus 328 ~l~~~~~~~l~~~~~~L~~L~l~~~ 352 (488)
.++..... .+++|+.|.++++
T Consensus 216 ~l~~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 216 SVTALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp CCCCCCCT----TCTTCSEEECTTC
T ss_pred ccccCChh----HhccCceeeccCc
Confidence 44421111 3566777777665
No 101
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.09 E-value=1.8e-11 Score=112.61 Aligned_cols=196 Identities=17% Similarity=0.153 Sum_probs=100.8
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
++++++++++++.+..-. . ...+++++|++++|. ++......+..+++|++|+++++. ...
T Consensus 9 l~~l~~l~~~~~~l~~ip-~---~~~~~l~~L~L~~N~---------l~~~~~~~~~~l~~L~~L~L~~n~------l~~ 69 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALP-P---DLPKDTTILHLSENL---------LYTFSLATLMPYTRLTQLNLDRAE------LTK 69 (290)
T ss_dssp STTCCEEECTTSCCSSCC-S---CCCTTCCEEECTTSC---------CSEEEGGGGTTCTTCCEEECTTSC------CCE
T ss_pred cCCccEEECCCCCCCcCC-C---CCCCCCCEEEcCCCc---------CCccCHHHhhcCCCCCEEECCCCc------cCc
Confidence 567777777765554311 0 124678888888774 444334456677777777776432 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... ..+++|+.|+++++ .+.. ++..+..+++|++|+++++. +.
T Consensus 70 ~~~~------~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~---------------------------l~ 113 (290)
T 1p9a_G 70 LQVD------GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNR---------------------------LT 113 (290)
T ss_dssp EECC------SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSC---------------------------CC
T ss_pred ccCC------CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCCc---------------------------Cc
Confidence 1111 23566666666663 3331 11112234444444444432 22
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HH
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DK 304 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~ 304 (488)
......+..+++|+.|+++++ .+.......+..+++|+.|++++|.++......+. .+++|+.|+++++. ++ +.
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~l~~L~~L~L~~N~-l~~ip~ 189 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLN--GLENLDTLLLQENS-LYTIPK 189 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTT--TCTTCCEEECCSSC-CCCCCT
T ss_pred ccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCHHHhc--CcCCCCEEECCCCc-CCccCh
Confidence 111122345666666666664 34443334455666777777777665533222222 26677777777643 33 11
Q ss_pred HHHHHhccCCCCCeeEEecCCCC
Q 011317 305 CISALFDGTSKLQLQELDLSNLP 327 (488)
Q Consensus 305 ~~~~l~~~~~~~~L~~L~l~~~~ 327 (488)
++. ..++|+.|++++.+
T Consensus 190 ~~~------~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 190 GFF------GSHLLPFAFLHGNP 206 (290)
T ss_dssp TTT------TTCCCSEEECCSCC
T ss_pred hhc------ccccCCeEEeCCCC
Confidence 111 11578888888743
No 102
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.06 E-value=1.3e-11 Score=113.53 Aligned_cols=197 Identities=17% Similarity=0.103 Sum_probs=131.5
Q ss_pred HhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCC
Q 011317 183 HSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLP 262 (488)
Q Consensus 183 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 262 (488)
..+++++.++++++. ++..+ ....++++.|+++++ .+.......+..+++|+.|+++++ .++... ....++
T Consensus 7 ~~l~~l~~l~~~~~~-l~~ip----~~~~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~--~~~~l~ 77 (290)
T 1p9a_G 7 SKVASHLEVNCDKRN-LTALP----PDLPKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQ--VDGTLP 77 (290)
T ss_dssp ECSTTCCEEECTTSC-CSSCC----SCCCTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEE--CCSCCT
T ss_pred cccCCccEEECCCCC-CCcCC----CCCCCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccCccc--CCCCCC
Confidence 346789999998754 32211 112368999999985 555444445678999999999985 454432 236889
Q ss_pred CccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCH---HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHh
Q 011317 263 QLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTD---KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLAT 339 (488)
Q Consensus 263 ~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~ 339 (488)
+|++|++++|.+..... .+ . .+++|+.|+++++. ++. ..+.. +++|++|+++++ .++...... ..
T Consensus 78 ~L~~L~Ls~N~l~~l~~-~~-~-~l~~L~~L~l~~N~-l~~l~~~~~~~------l~~L~~L~L~~N-~l~~~~~~~-~~ 145 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPL-LG-Q-TLPALTVLDVSFNR-LTSLPLGALRG------LGELQELYLKGN-ELKTLPPGL-LT 145 (290)
T ss_dssp TCCEEECCSSCCSSCCC-CT-T-TCTTCCEEECCSSC-CCCCCSSTTTT------CTTCCEEECTTS-CCCCCCTTT-TT
T ss_pred cCCEEECCCCcCCcCch-hh-c-cCCCCCEEECCCCc-CcccCHHHHcC------CCCCCEEECCCC-CCCccChhh-cc
Confidence 99999999997763221 12 2 48899999999864 442 22222 289999999994 565222111 22
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++| .++......+ . .+++|+.|++++|. ++.... .+. ..++|+.|.+++|+
T Consensus 146 ~l~~L~~L~L~~N-~l~~l~~~~~-~--------~l~~L~~L~L~~N~-l~~ip~-~~~--~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 146 PTPKLEKLSLANN-NLTELPAGLL-N--------GLENLDTLLLQENS-LYTIPK-GFF--GSHLLPFAFLHGNP 206 (290)
T ss_dssp TCTTCCEEECTTS-CCSCCCTTTT-T--------TCTTCCEEECCSSC-CCCCCT-TTT--TTCCCSEEECCSCC
T ss_pred cccCCCEEECCCC-cCCccCHHHh-c--------CcCCCCEEECCCCc-CCccCh-hhc--ccccCCeEEeCCCC
Confidence 5889999999999 5552211111 1 68899999999998 663221 222 36789999999886
No 103
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=3.5e-10 Score=106.66 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=25.3
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCCHHHHHHHHc
Q 011317 316 LQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALAS 365 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~ 365 (488)
++|++|+|+. +.+++.+...+.. .+++|+.|++++| .+++.++..+..
T Consensus 279 ~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~ 329 (362)
T 2ra8_A 279 PQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQK 329 (362)
T ss_dssp GGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHH
T ss_pred CCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHH
Confidence 4555555554 3555555444432 2455666666555 455555555554
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.01 E-value=4.2e-11 Score=107.91 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=45.6
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHH
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFR 395 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 395 (488)
++|++|+++++ .++...... ...+++|+.|++++| .++......+. .+++|++|++++|. ++.....
T Consensus 107 ~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~ 173 (251)
T 3m19_A 107 TQLDKLYLGGN-QLKSLPSGV-FDRLTKLKELRLNTN-QLQSIPAGAFD---------KLTNLQTLSLSTNQ-LQSVPHG 173 (251)
T ss_dssp TTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTT---------TCTTCCEEECCSSC-CSCCCTT
T ss_pred CCCCEEEcCCC-cCCCcChhH-hccCCcccEEECcCC-cCCccCHHHcC---------cCcCCCEEECCCCc-CCccCHH
Confidence 56666666652 443111111 114677777777777 44422111111 56777777777776 5543333
Q ss_pred HhhccCCCCccEEEecCCC
Q 011317 396 WLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 396 ~l~~~~~~~L~~L~l~~~~ 414 (488)
.+. .+++|+.|++++|+
T Consensus 174 ~~~--~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 174 AFD--RLGKLQTITLFGNQ 190 (251)
T ss_dssp TTT--TCTTCCEEECCSCC
T ss_pred HHh--CCCCCCEEEeeCCc
Confidence 333 36778888887765
No 105
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.01 E-value=6e-09 Score=88.70 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=60.4
Q ss_pred CCCccEEecCCCCCCCHHHHHHHhcc-CCCCCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCCHHHHHH
Q 011317 287 ITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 287 ~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
.++|++|++++|..+++.+...++.. ...++|++|+|++ +.+++.+...++. ..++|++|++++| .+++.+...
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHH
Confidence 44455555544423444444333221 0114566666665 3555555444332 2355666666666 566666666
Q ss_pred HHcccccCCCCCCCCccEEec--cCCCCCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011317 363 LASMLVDDDRWYGSSIRLLDL--YNCGGITQLAFRWLKK--PYFPRLRWLGVTGSV 414 (488)
Q Consensus 363 l~~~~~~~~~~~~~~L~~L~l--~~~~~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 414 (488)
++.++. .+++|++|++ ++|. +++.+...+.. ...++|++|++++|.
T Consensus 113 l~~~L~-----~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 113 LVEALQ-----SNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHGGG-----GCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHH-----hCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 555444 4556666666 4454 66655443332 124566666666654
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.01 E-value=1.8e-10 Score=116.65 Aligned_cols=167 Identities=23% Similarity=0.264 Sum_probs=120.1
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
.+++|+.|+++++ .+... +. +..+++|+.|+|+++......+ ...+++|+.|+++++ .+.. +..+..++
T Consensus 41 ~L~~L~~L~l~~n-~i~~l--~~-l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~--l~~l~~l~ 109 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDEN-KIKD--LSSLKDLK 109 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCC--TT-GGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSS-CCCC--CTTSTTCT
T ss_pred cCCCCCEEECcCC-CCCCC--hH-HccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCC-CCCC--ChhhccCC
Confidence 4678999999985 45432 12 3678999999999876322111 567899999999996 4443 22567899
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 317 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 317 (488)
+|+.|+++++ .+.. +..+..+++|+.|+|++|.+... ..+. .+++|+.|++++|. ++.... + . .+++
T Consensus 110 ~L~~L~Ls~N-~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~--~l~~L~~L~Ls~N~-l~~~~~--l-~--~l~~ 176 (605)
T 1m9s_A 110 KLKSLSLEHN-GISD--INGLVHLPQLESLYLGNNKITDI--TVLS--RLTKLDTLSLEDNQ-ISDIVP--L-A--GLTK 176 (605)
T ss_dssp TCCEEECTTS-CCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGG--SCTTCSEEECCSSC-CCCCGG--G-T--TCTT
T ss_pred CCCEEEecCC-CCCC--CccccCCCccCEEECCCCccCCc--hhhc--ccCCCCEEECcCCc-CCCchh--h-c--cCCC
Confidence 9999999986 4443 34577899999999999988764 2333 48999999999975 442111 2 2 2389
Q ss_pred eeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCC
Q 011317 318 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQC 352 (488)
Q Consensus 318 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 352 (488)
|+.|+|++| .+++. ..+ ..+++|+.|++++|
T Consensus 177 L~~L~Ls~N-~i~~l--~~l-~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 177 LQNLYLSKN-HISDL--RAL-AGLKNLDVLELFSQ 207 (605)
T ss_dssp CCEEECCSS-CCCBC--GGG-TTCTTCSEEECCSE
T ss_pred CCEEECcCC-CCCCC--hHH-ccCCCCCEEEccCC
Confidence 999999995 66642 222 36899999999998
No 107
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.00 E-value=4.5e-09 Score=89.46 Aligned_cols=126 Identities=21% Similarity=0.236 Sum_probs=70.6
Q ss_pred cCCCCccEEEeCCC-ccchhHHHHHHh--hcCCCccEEecCCCCCCCHHHHHHHhccC-CCCCeeEEecCCCCCCCHHHH
Q 011317 259 SSLPQLKILLLDGS-DISDVGVSYLRL--TVITSLVKLSLRGCKRLTDKCISALFDGT-SKLQLQELDLSNLPHLSDNGI 334 (488)
Q Consensus 259 ~~~~~L~~L~l~~~-~i~~~~~~~l~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~l~~~~~ 334 (488)
...++|++|+|++| .+.+.+...+.. ...++|++|++++| .+++++...++..- ..++|++|+|++ +.+++.+.
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHHH
Confidence 34555555555555 555554443332 12455666666554 25555443332210 015677777776 46676666
Q ss_pred HHHHh---cCCCCCeEee--cCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHH
Q 011317 335 LTLAT---CRVPISELRV--RQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLA 393 (488)
Q Consensus 335 ~~l~~---~~~~L~~L~l--~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 393 (488)
..++. ..++|+.|++ ++| .+++.+...++.++. .+++|++|++++|. +++.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~-----~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLE-----KNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHH-----HCSSCCEEECCCSS-HHHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHH-----hCCCcCEEeccCCC-CChHH
Confidence 55543 3456777777 556 677777666665444 56677777777776 55543
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.95 E-value=9.5e-11 Score=105.55 Aligned_cols=136 Identities=17% Similarity=0.164 Sum_probs=72.8
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhcc
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDG 312 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 312 (488)
+..+++|++|+++++ .+.......+..+++|++|++++|.++......+.. +++|+.|+++++. ++......+
T Consensus 55 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~~~~~--- 127 (251)
T 3m19_A 55 FRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDH--LTQLDKLYLGGNQ-LKSLPSGVF--- 127 (251)
T ss_dssp TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT--CTTCCEEECCSSC-CCCCCTTTT---
T ss_pred hcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhcc--cCCCCEEEcCCCc-CCCcChhHh---
Confidence 345566666666653 344433344556666666666666555333222222 5666666666642 331100001
Q ss_pred CCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 313 TSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 313 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
..+++|++|+++++ .++......+ ..+++|+.|++++| .++......+. .+++|+.|++++|+
T Consensus 128 ~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 128 DRLTKLKELRLNTN-QLQSIPAGAF-DKLTNLQTLSLSTN-QLQSVPHGAFD---------RLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSCC
T ss_pred ccCCcccEEECcCC-cCCccCHHHc-CcCcCCCEEECCCC-cCCccCHHHHh---------CCCCCCEEEeeCCc
Confidence 11267777777773 5542211111 25778888888888 55432221221 67788888888887
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.87 E-value=9.5e-10 Score=99.53 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=26.4
Q ss_pred CCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
++|+.|+++++ .+.... .+..+++|+.|+++++ .+..... +..+++|+.|++++|.++
T Consensus 41 ~~L~~L~l~~n-~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 41 SGVQNFNGDNS-NIQSLA--GMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp TTCSEEECTTS-CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSCCS
T ss_pred CcCcEEECcCC-Ccccch--HHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCccC
Confidence 45555555553 222211 2344555555555553 2332221 445555555555555443
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.82 E-value=6.5e-10 Score=91.23 Aligned_cols=82 Identities=28% Similarity=0.368 Sum_probs=37.2
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHH-
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF- 394 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~- 394 (488)
++|++|+++++ .++.. +......+++|+.|++++| .+++........ .+++|++|++++|. ++....
T Consensus 64 ~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~--------~l~~L~~L~l~~N~-l~~~~~~ 131 (149)
T 2je0_A 64 NKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLK--------KLENLKSLDLFNCE-VTNLNDY 131 (149)
T ss_dssp TTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTS-CCCSHHHHGGGG--------GCTTCCEEECTTCG-GGGSTTH
T ss_pred CCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCC-cCCChHHHHHHh--------hCCCCCEEeCcCCc-ccchHHH
Confidence 45555555552 33321 1112223556666666665 444432211111 45566666666664 443221
Q ss_pred --HHhhccCCCCccEEEec
Q 011317 395 --RWLKKPYFPRLRWLGVT 411 (488)
Q Consensus 395 --~~l~~~~~~~L~~L~l~ 411 (488)
..+.. +++|+.|+++
T Consensus 132 ~~~~~~~--l~~L~~L~l~ 148 (149)
T 2je0_A 132 RENVFKL--LPQLTYLDGY 148 (149)
T ss_dssp HHHHHHH--CTTCCEETTB
T ss_pred HHHHHHH--CCCcccccCC
Confidence 22332 5666666553
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.81 E-value=1.7e-10 Score=109.34 Aligned_cols=207 Identities=11% Similarity=0.096 Sum_probs=109.1
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.+++++|+|+.+.+..-....+ ..+++|++|+|++|... +......+..+++|+++.+..+.. ...
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f-~~l~~L~~L~Ls~N~i~--------~~i~~~~f~~L~~l~~~l~~~~N~-----l~~ 94 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAF-SGFGDLEKIEISQNDVL--------EVIEADVFSNLPKLHEIRIEKANN-----LLY 94 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSS-TTCTTCCEEEEECCTTC--------CEECTTSBCSCTTCCEEEEEEETT-----CCE
T ss_pred CCCCCEEEccCCcCCCcCHHHH-cCCCCCCEEECcCCCCC--------CccChhHhhcchhhhhhhcccCCc-----ccc
Confidence 4688999999887764222222 36889999999988521 111122355677777655433211 112
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
+... .+..+++|+.|+++++ .+....... .....++..|++.++..+.......+......++.|+++++ .+.
T Consensus 95 l~~~----~f~~l~~L~~L~l~~n-~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~ 167 (350)
T 4ay9_X 95 INPE----AFQNLPNLQYLLISNT-GIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQ 167 (350)
T ss_dssp ECTT----SBCCCTTCCEEEEEEE-CCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCC
T ss_pred cCch----hhhhcccccccccccc-ccccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-ccc
Confidence 2111 1245788888888873 443221101 11234566677765443332211112222345677777763 333
Q ss_pred HHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCC
Q 011317 227 NHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKR 300 (488)
Q Consensus 227 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~ 300 (488)
..... .....+|+.|.+.+++.++......+..+++|+.|++++|.++.... ..+.+|++|.+.++.+
T Consensus 168 ~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-----~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 168 EIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-----YGLENLKKLRARSTYN 235 (350)
T ss_dssp EECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-----SSCTTCCEEECTTCTT
T ss_pred CCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-----hhhccchHhhhccCCC
Confidence 21111 11345677777766555655555556667777777777776653221 1345566666655543
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.81 E-value=2.7e-09 Score=87.53 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=63.8
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCc
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 239 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 239 (488)
++|+.|+++++ .+.+..++..+..+++|+.|+++++. +... .....+++|++|+++++ .+.......+..+++|
T Consensus 17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTC
T ss_pred ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCC
Confidence 44555555553 33311112222345566666665543 2211 12234556666666663 3322111223346677
Q ss_pred CEEeccCCCCCChH-HHHhhcCCCCccEEEeCCCccchhHH---HHHHhhcCCCccEEecC
Q 011317 240 KVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDISDVGV---SYLRLTVITSLVKLSLR 296 (488)
Q Consensus 240 ~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~---~~l~~~~~~~L~~L~l~ 296 (488)
++|+++++ .++.. ....+..+++|++|++++|.++.... ..+.. +++|+.|+++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL--LPQLTYLDGY 148 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH--CTTCCEETTB
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH--CCCcccccCC
Confidence 77777764 34443 23556667777777777776654432 22333 6667766654
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.75 E-value=3.7e-09 Score=95.61 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=15.6
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDC 247 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 247 (488)
.+++|++|+++++ .+..... +..+++|+.|+++++
T Consensus 61 ~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 61 FFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp GCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSS
T ss_pred hCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCC
Confidence 3445555555543 2222111 444555555555553
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=2e-09 Score=100.98 Aligned_cols=126 Identities=16% Similarity=0.129 Sum_probs=79.1
Q ss_pred CCCCCEEEecCCCCCCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCC
Q 011317 211 SLSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITS 289 (488)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~ 289 (488)
..+++.+.+.+ .+.......+. .|++|+.++++++ .+...+..++..|++|+.|.+..+ +...+-..+. +|++
T Consensus 201 ~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~--~~~~ 274 (329)
T 3sb4_A 201 PRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS--NCGR 274 (329)
T ss_dssp GGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT--TCTT
T ss_pred ccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhh--CChh
Confidence 34666666665 24444444444 4899999999874 566666777888999999999886 4333333333 4888
Q ss_pred cc-EEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEee
Q 011317 290 LV-KLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRV 349 (488)
Q Consensus 290 L~-~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l 349 (488)
|+ .+.+.+ .++.-+-.. +.+| ++|++|++.+ +.++.-+-.++. .|++|+.+..
T Consensus 275 L~~~l~l~~--~l~~I~~~a-F~~c--~~L~~l~l~~-n~i~~I~~~aF~-~~~~L~~ly~ 328 (329)
T 3sb4_A 275 LAGTLELPA--SVTAIEFGA-FMGC--DNLRYVLATG-DKITTLGDELFG-NGVPSKLIYK 328 (329)
T ss_dssp CCEEEEECT--TCCEECTTT-TTTC--TTEEEEEECS-SCCCEECTTTTC-TTCCCCEEEC
T ss_pred ccEEEEEcc--cceEEchhh-hhCC--ccCCEEEeCC-CccCccchhhhc-CCcchhhhcc
Confidence 98 999976 343211111 2233 8899999966 455532222222 6889988753
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=3.8e-09 Score=99.13 Aligned_cols=225 Identities=15% Similarity=0.110 Sum_probs=121.8
Q ss_pred CCCCcEEEeec--CccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccc
Q 011317 67 LPGIQKLCLSV--DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYF 144 (488)
Q Consensus 67 l~~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~ 144 (488)
+++|++|.|.. ..+++..+ ..|++|+.|++..+. ++..+-..|..|.++..+.+....... ..
T Consensus 100 ~~~L~~l~L~~~i~~I~~~aF----~~~~~L~~l~l~~n~---------i~~i~~~aF~~~~~l~~l~~~~~~~~~--~~ 164 (329)
T 3sb4_A 100 KQTLEKVILSEKIKNIEDAAF----KGCDNLKICQIRKKT---------APNLLPEALADSVTAIFIPLGSSDAYR--FK 164 (329)
T ss_dssp CTTCCC-CBCTTCCEECTTTT----TTCTTCCEEEBCCSS---------CCEECTTSSCTTTCEEEECTTCTHHHH--TS
T ss_pred cCCCcEEECCccccchhHHHh----hcCcccceEEcCCCC---------ccccchhhhcCCCceEEecCcchhhhh--cc
Confidence 56666666664 22333222 356677777776653 222222334456666666553200000 00
Q ss_pred cccChHHHHHHHHhCCCCC-EEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCC
Q 011317 145 RRVNDLGILLMADKCASME-SICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCN 223 (488)
Q Consensus 145 ~~~~~~~l~~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 223 (488)
..+.+.. +..|.+|+ .+.+.....+... +........+++.+.+.+. +....+..+...|++|+.++++++
T Consensus 165 ~~i~~~~----f~~~~~L~~~i~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n- 236 (329)
T 3sb4_A 165 NRWEHFA----FIEGEPLETTIQVGAMGKLEDE-IMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT- 236 (329)
T ss_dssp TTTTTSC----EEESCCCEEEEEECTTCCHHHH-HHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-
T ss_pred ccccccc----cccccccceeEEecCCCcHHHH-HhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-
Confidence 0000000 12355566 4555543322221 1111112456777777653 555666666667889999999873
Q ss_pred CCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCcc-EEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC
Q 011317 224 LLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK-ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT 302 (488)
Q Consensus 224 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~ 302 (488)
.+...+..++..|++|+.|++.+. +...+..++..|++|+ .+.+.. .++..+-..+. +|++|+.|++.+. .++
T Consensus 237 ~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~--~c~~L~~l~l~~n-~i~ 310 (329)
T 3sb4_A 237 NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM--GCDNLRYVLATGD-KIT 310 (329)
T ss_dssp CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT--TCTTEEEEEECSS-CCC
T ss_pred CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhh--CCccCCEEEeCCC-ccC
Confidence 444444445668899999999873 6666667788899998 999987 44333333333 4889999998653 343
Q ss_pred HHHHHHHhccCCCCCeeEEec
Q 011317 303 DKCISALFDGTSKLQLQELDL 323 (488)
Q Consensus 303 ~~~~~~l~~~~~~~~L~~L~l 323 (488)
.-+-..+ .+| ++|++++.
T Consensus 311 ~I~~~aF-~~~--~~L~~ly~ 328 (329)
T 3sb4_A 311 TLGDELF-GNG--VPSKLIYK 328 (329)
T ss_dssp EECTTTT-CTT--CCCCEEEC
T ss_pred ccchhhh-cCC--cchhhhcc
Confidence 2111112 223 78888764
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.72 E-value=2.6e-09 Score=89.55 Aligned_cols=131 Identities=17% Similarity=0.134 Sum_probs=65.8
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCc
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGI 239 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L 239 (488)
++|+.|+++++ .+.+..++..+..+++|+.|+++++. +... .....+++|++|+++++ .+.......+..+++|
T Consensus 24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTC
T ss_pred ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCC
Confidence 44555555553 23211112222344555555555543 2211 12234556666666654 2222111122346777
Q ss_pred CEEeccCCCCCChH-HHHhhcCCCCccEEEeCCCccchhHH---HHHHhhcCCCccEEecCCCC
Q 011317 240 KVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDISDVGV---SYLRLTVITSLVKLSLRGCK 299 (488)
Q Consensus 240 ~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~---~~l~~~~~~~L~~L~l~~~~ 299 (488)
+.|+++++ .+... .+..+..+++|+.|++++|.++.... ..+. .+++|+.|++++|.
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK--LLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHT--TCSSCCEETTEETT
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHH--hCccCcEecCCCCC
Confidence 77777775 44443 33556677777777777776654432 2222 36777777776653
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.69 E-value=5.1e-10 Score=112.53 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=20.7
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCC
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 103 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 103 (488)
+++|+.|+|+.+.+. .....+ ..+++|+.|+++++
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i-~~l~~L~~L~l~~n 382 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSEL-ESCKELQELEPENK 382 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHH-HHHHHHHHHCTTCH
T ss_pred CccceeccCChhhHH-hhHHHH-HHHHHHHHhccccc
Confidence 566777777766554 223333 35677777777554
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.67 E-value=2.4e-09 Score=101.85 Aligned_cols=133 Identities=17% Similarity=0.099 Sum_probs=69.4
Q ss_pred CCCCEEEecCCCCCCHHHHHHhh-CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCc
Q 011317 212 LSLTHVCLRWCNLLTNHAIKSLA-SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSL 290 (488)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L 290 (488)
+.++.|+++++ .+.......+. .+++|+.|+++++ .+.......+..+++|++|+|++|.+.......+.. +++|
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD--LQAL 114 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTC
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC--CcCC
Confidence 35777777773 44433332333 6677777777764 455544455667777777777777665433222222 6677
Q ss_pred cEEecCCCCCCCH---HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHH--HhcCCCCCeEeecCCCCCCH
Q 011317 291 VKLSLRGCKRLTD---KCISALFDGTSKLQLQELDLSNLPHLSDNGILTL--ATCRVPISELRVRQCPLIGD 357 (488)
Q Consensus 291 ~~L~l~~~~~l~~---~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~l~~ 357 (488)
+.|+++++. ++. ..+.. +++|++|+|++ +.++......+ ...+++|+.|++++| .++.
T Consensus 115 ~~L~L~~N~-i~~~~~~~~~~------l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 177 (361)
T 2xot_A 115 EVLLLYNNH-IVVVDRNAFED------MAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSN-KLKK 177 (361)
T ss_dssp CEEECCSSC-CCEECTTTTTT------CTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSS-CCCC
T ss_pred CEEECCCCc-ccEECHHHhCC------cccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCC-CCCc
Confidence 777776643 331 11111 25666666666 34432111100 013556666666665 4443
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.66 E-value=1.4e-08 Score=85.04 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=5.8
Q ss_pred CCCCccEEEeCCCc
Q 011317 260 SLPQLKILLLDGSD 273 (488)
Q Consensus 260 ~~~~L~~L~l~~~~ 273 (488)
.+++|+.|++++|.
T Consensus 47 ~l~~L~~L~l~~n~ 60 (168)
T 2ell_A 47 EFVNLEFLSLINVG 60 (168)
T ss_dssp GGGGCCEEEEESSC
T ss_pred hCCCCCEEeCcCCC
Confidence 33444444444443
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.64 E-value=2.2e-09 Score=93.56 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=16.5
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
.+++|++|+++++ .+.......+..+++|++|++++|.++
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 89 (208)
T 2o6s_A 50 ELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQ 89 (208)
T ss_dssp TCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCC
Confidence 3444444444442 232222222334444444444444433
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.63 E-value=2.9e-10 Score=107.79 Aligned_cols=227 Identities=15% Similarity=0.054 Sum_probs=137.6
Q ss_pred CCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCC
Q 011317 159 CASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTG 238 (488)
Q Consensus 159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 238 (488)
.+++++|+|++ +.++.. ....+..+++|++|+++++......+. ..+..+++++++.+.+++.+.......+..+++
T Consensus 29 ~~~l~~L~Ls~-N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 29 PRNAIELRFVL-TKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp CTTCSEEEEES-CCCSEE-CTTSSTTCTTCCEEEEECCTTCCEECT-TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CCCCCEEEccC-CcCCCc-CHHHHcCCCCCCEEECcCCCCCCccCh-hHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 35799999998 566643 222346789999999998764321111 123456777776665545555433334568899
Q ss_pred cCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC-ccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCC
Q 011317 239 IKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS-DISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQ 317 (488)
Q Consensus 239 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 317 (488)
|++|+++++ .+.......+....++..|++.++ .+.......+.. ....++.|+++++. ++.-.-..+ ...+
T Consensus 106 L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~-~~~~l~~L~L~~N~-i~~i~~~~f----~~~~ 178 (350)
T 4ay9_X 106 LQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG-LSFESVILWLNKNG-IQEIHNSAF----NGTQ 178 (350)
T ss_dssp CCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT-SBSSCEEEECCSSC-CCEECTTSS----TTEE
T ss_pred ccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhh-cchhhhhhcccccc-ccCCChhhc----cccc
Confidence 999999985 444333223335566778888664 444322222222 23468889998853 542111111 1267
Q ss_pred eeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHh
Q 011317 318 LQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWL 397 (488)
Q Consensus 318 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l 397 (488)
|++|.+.+++.++.-...++ ..+++|+.|++++| .++. +... .+.+|+.|.+.++.+++.. ..+
T Consensus 179 L~~l~l~~~n~l~~i~~~~f-~~l~~L~~LdLs~N-~l~~-----lp~~-------~~~~L~~L~~l~~~~l~~l--P~l 242 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVF-HGASGPVILDISRT-RIHS-----LPSY-------GLENLKKLRARSTYNLKKL--PTL 242 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTT-TTEECCSEEECTTS-CCCC-----CCSS-------SCTTCCEEECTTCTTCCCC--CCT
T ss_pred hhHHhhccCCcccCCCHHHh-ccCcccchhhcCCC-CcCc-----cChh-------hhccchHhhhccCCCcCcC--CCc
Confidence 99999987666653221111 26889999999999 5552 2111 4677888888877765542 233
Q ss_pred hccCCCCccEEEecCC
Q 011317 398 KKPYFPRLRWLGVTGS 413 (488)
Q Consensus 398 ~~~~~~~L~~L~l~~~ 413 (488)
. .+++|+.+++.+.
T Consensus 243 ~--~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 E--KLVALMEASLTYP 256 (350)
T ss_dssp T--TCCSCCEEECSCH
T ss_pred h--hCcChhhCcCCCC
Confidence 3 3889999998653
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.62 E-value=3.6e-09 Score=100.62 Aligned_cols=167 Identities=23% Similarity=0.196 Sum_probs=109.4
Q ss_pred CCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCcc
Q 011317 186 SNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 265 (488)
Q Consensus 186 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 265 (488)
+.++.|+++++. ++......+...+++|+.|+++++ .+.......+..+++|++|+++++ .+.......+..+++|+
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALE 115 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCC
Confidence 468999999865 332221111126789999999984 555443345668999999999995 56665556678899999
Q ss_pred EEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCC--
Q 011317 266 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVP-- 343 (488)
Q Consensus 266 ~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-- 343 (488)
.|+|++|.+.......+.. +++|+.|+++++. ++......+.....+++|+.|+|++ +.++......+. .++.
T Consensus 116 ~L~L~~N~i~~~~~~~~~~--l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~-~l~~~~ 190 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFED--MAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQ-KLPAWV 190 (361)
T ss_dssp EEECCSSCCCEECTTTTTT--CTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHH-HSCHHH
T ss_pred EEECCCCcccEECHHHhCC--cccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhh-hccHhh
Confidence 9999999887654444444 8999999999864 4421111110001238999999998 566643333333 3565
Q ss_pred CCeEeecCCCCCCHHHH
Q 011317 344 ISELRVRQCPLIGDTSV 360 (488)
Q Consensus 344 L~~L~l~~~~~l~~~~~ 360 (488)
|+.|++.+|+-.-+-.+
T Consensus 191 l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 191 KNGLYLHNNPLECDCKL 207 (361)
T ss_dssp HTTEECCSSCEECCHHH
T ss_pred cceEEecCCCccCCcCc
Confidence 48899999864444443
No 123
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.59 E-value=7.4e-09 Score=90.95 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=20.1
Q ss_pred CCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 374 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 374 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++......+.. +++|+.|++++|+
T Consensus 126 ~l~~L~~L~L~~N~-l~~~~~~~~~~--l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 126 DLHNLNLLSLYDNK-LQTIAKGTFSP--LRAIQTMHLAQNP 163 (220)
T ss_dssp TCTTCCEEECCSSC-CSCCCTTTTTT--CTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc-CCEECHHHHhC--CCCCCEEEeCCCC
Confidence 45556666666655 44332222332 5666666666654
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.55 E-value=2.3e-08 Score=88.35 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=20.5
Q ss_pred CCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 374 YGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 374 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++......+. .+++|+.|++.+|+
T Consensus 133 ~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQNQ-LKSIPHGAFD--RLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSSC-CCCCCTTTTT--TCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCCc-CCccCHHHHh--CCCCCCEEEeeCCC
Confidence 45666666666665 4432222232 25666666666654
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.53 E-value=1.4e-08 Score=89.18 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=29.9
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
++|++|++++ +.++......+. .+++|+.|++++| .++......+. .+++|+.|++++|+
T Consensus 104 ~~L~~L~L~~-N~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 104 FSLQLLLLNA-NKINCLRVDAFQ-DLHNLNLLSLYDN-KLQTIAKGTFS---------PLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTT-TCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSSC
T ss_pred CCCCEEECCC-CCCCEeCHHHcC-CCCCCCEEECCCC-cCCEECHHHHh---------CCCCCCEEEeCCCC
Confidence 4555555555 233321111111 4566777777766 44322211111 56677777777776
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.53 E-value=2e-08 Score=88.84 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=20.8
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
.+++|+.|++++| .++......+. .+++|+.|++++|+
T Consensus 133 ~l~~L~~L~L~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 133 RLTHLTHLALDQN-QLKSIPHGAFD---------RLSSLTHAYLFGNP 170 (229)
T ss_dssp GCTTCSEEECCSS-CCCCCCTTTTT---------TCTTCCEEECTTSC
T ss_pred cCCCCCEEECCCC-cCCccCHHHHh---------CCCCCCEEEeeCCC
Confidence 4666667776666 44421111111 56667777777766
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.52 E-value=1.9e-08 Score=87.52 Aligned_cols=133 Identities=20% Similarity=0.149 Sum_probs=71.1
Q ss_pred CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 011317 236 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK 315 (488)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 315 (488)
.++|++|+++++ .+.......+..+++|++|++++|.++......+. .+++|++|+++++. ++......+ ..+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~-l~~~~~~~~---~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--KLTSLTYLNLSTNQ-LQSLPNGVF---DKL 99 (208)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSC-CCCCCTTTT---TTC
T ss_pred CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcC--CCCCcCEEECCCCc-CCccCHhHh---cCc
Confidence 457788888774 45544444566778888888888766643322222 36777777777753 331100000 112
Q ss_pred CCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCC
Q 011317 316 LQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
++|++|+++++ .++...... ...+++|+.|++++| .++......+. .+++|++|++++|+
T Consensus 100 ~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N-~l~~~~~~~~~---------~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 100 TQLKELALNTN-QLQSLPDGV-FDKLTQLKDLRLYQN-QLKSVPDGVFD---------RLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTT---------TCTTCCEEECCSCC
T ss_pred cCCCEEEcCCC-cCcccCHhH-hccCCcCCEEECCCC-ccceeCHHHhc---------cCCCccEEEecCCC
Confidence 66777777663 444211111 124566777777666 44321111111 45666777776664
No 128
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.51 E-value=1.2e-06 Score=73.95 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=78.4
Q ss_pred cCCCccEEecCCCCCCCHHHHHHHhcc-CCCCCeeEEecCCCCCCCHHHHHHHHh---cCCCCCeEeecCCCCCCHHHHH
Q 011317 286 VITSLVKLSLRGCKRLTDKCISALFDG-TSKLQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVI 361 (488)
Q Consensus 286 ~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~ 361 (488)
.-+.|++|++++++.+++++...++.. .....|++|+|++ +.+.+.+..+++. .-+.|+.|+|++| .+++.|..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence 356677777766445666665554432 1115788888887 4777777655543 3367888888888 78888888
Q ss_pred HHHcccccCCCCCCCCccEEeccCCC--CCCHHHHHHhhc--cCCCCccEEEecCCC
Q 011317 362 ALASMLVDDDRWYGSSIRLLDLYNCG--GITQLAFRWLKK--PYFPRLRWLGVTGSV 414 (488)
Q Consensus 362 ~l~~~~~~~~~~~~~~L~~L~l~~~~--~i~~~~~~~l~~--~~~~~L~~L~l~~~~ 414 (488)
.++.++. ..+.|++|+++++. .+.+.+...+.. ..-++|+.|+++.+.
T Consensus 117 ala~aL~-----~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTL-----VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTT-----TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHh-----hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 8877766 56678888887653 366655433322 025678888887654
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.51 E-value=3.3e-08 Score=99.00 Aligned_cols=20 Identities=5% Similarity=-0.199 Sum_probs=10.3
Q ss_pred CCCCccEEeccCCCCCCHHHH
Q 011317 374 YGSSIRLLDLYNCGGITQLAF 394 (488)
Q Consensus 374 ~~~~L~~L~l~~~~~i~~~~~ 394 (488)
.+++|+.|++++|+ ++....
T Consensus 228 ~l~~L~~L~L~~N~-l~~~~p 247 (571)
T 3cvr_A 228 SLDPTCTIILEDNP-LSSRIR 247 (571)
T ss_dssp GSCTTEEEECCSSS-CCHHHH
T ss_pred cCCCCCEEEeeCCc-CCCcCH
Confidence 34555555555555 554333
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.49 E-value=4.7e-08 Score=82.47 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=44.3
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHH-HHhhcCCCCccEEEeCCCccchhHHH---HHHhh
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEA-LRAISSLPQLKILLLDGSDISDVGVS---YLRLT 285 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~---~l~~~ 285 (488)
.+++|+.|+++++ .+...+...+..+++|+.|+++++ .+.... +..+..+++|+.|++++|.+...... .+..
T Consensus 62 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~- 138 (176)
T 1a9n_A 62 LLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYK- 138 (176)
T ss_dssp CCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHH-
T ss_pred cCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHH-
Confidence 3445555555553 232211111245667777777764 343322 23556677777777777765432211 2333
Q ss_pred cCCCccEEecCCC
Q 011317 286 VITSLVKLSLRGC 298 (488)
Q Consensus 286 ~~~~L~~L~l~~~ 298 (488)
+++|+.|+++++
T Consensus 139 -l~~L~~Ld~~~n 150 (176)
T 1a9n_A 139 -VPQVRVLDFQKV 150 (176)
T ss_dssp -CTTCSEETTEEC
T ss_pred -CCccceeCCCcC
Confidence 677777776654
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.47 E-value=2.3e-08 Score=87.76 Aligned_cols=62 Identities=24% Similarity=0.176 Sum_probs=33.4
Q ss_pred cCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 340 CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 340 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++| .++......+. .+++|++|++++|. ++......+.. +++|+.|++++|+
T Consensus 103 ~l~~L~~L~Ls~N-~l~~~~~~~~~---------~l~~L~~L~L~~N~-l~~~~~~~~~~--l~~L~~L~L~~N~ 164 (220)
T 2v70_A 103 GLESLKTLMLRSN-RITCVGNDSFI---------GLSSVRLLSLYDNQ-ITTVAPGAFDT--LHSLSTLNLLANP 164 (220)
T ss_dssp TCSSCCEEECTTS-CCCCBCTTSST---------TCTTCSEEECTTSC-CCCBCTTTTTT--CTTCCEEECCSCC
T ss_pred CCcCCCEEECCCC-cCCeECHhHcC---------CCccCCEEECCCCc-CCEECHHHhcC--CCCCCEEEecCcC
Confidence 4566666666666 33321111111 45667777777665 55433333433 6677777777665
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.47 E-value=1.5e-08 Score=88.87 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=5.0
Q ss_pred CCCCCEEEEcC
Q 011317 159 CASMESICLGG 169 (488)
Q Consensus 159 ~~~L~~L~l~~ 169 (488)
+++|+.|++++
T Consensus 56 l~~L~~L~L~~ 66 (220)
T 2v70_A 56 LPQLRKINFSN 66 (220)
T ss_dssp CTTCCEEECCS
T ss_pred CCCCCEEECCC
Confidence 44444444444
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.47 E-value=8.2e-09 Score=89.07 Aligned_cols=105 Identities=21% Similarity=0.106 Sum_probs=50.5
Q ss_pred hcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHH
Q 011317 258 ISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGTSKLQLQELDLSNLPHLSDNGIL 335 (488)
Q Consensus 258 l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~ 335 (488)
+..+++|++|++++|.+.... .+.. +++|+.|++++|. ++ +..+..+ ++|++|+++++ .++.. .
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~--l~~L~~L~l~~n~-l~~l~~~~~~~------~~L~~L~L~~N-~l~~l--~ 109 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSG--MENLRILSLGRNL-IKKIENLDAVA------DTLEELWISYN-QIASL--S 109 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHH--HTTCCEEEEEEEE-ECSCSSHHHHH------HHCSEEEEEEE-ECCCH--H
T ss_pred HhcCCCCCEEECCCCCCcccc--cccc--CCCCCEEECCCCC-cccccchhhcC------CcCCEEECcCC-cCCcC--C
Confidence 445556666666655444322 2222 5556666665542 22 1112222 45666666653 44321 1
Q ss_pred HHHhcCCCCCeEeecCCCCCCHHHH-HHHHcccccCCCCCCCCccEEeccCCC
Q 011317 336 TLATCRVPISELRVRQCPLIGDTSV-IALASMLVDDDRWYGSSIRLLDLYNCG 387 (488)
Q Consensus 336 ~l~~~~~~L~~L~l~~~~~l~~~~~-~~l~~~~~~~~~~~~~~L~~L~l~~~~ 387 (488)
.+. .+++|+.|++++| .+++... ..+. .+++|++|++++|+
T Consensus 110 ~~~-~l~~L~~L~l~~N-~i~~~~~~~~l~---------~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 110 GIE-KLVNLRVLYMSNN-KITNWGEIDKLA---------ALDKLEDLLLAGNP 151 (198)
T ss_dssp HHH-HHHHSSEEEESEE-ECCCHHHHHHHT---------TTTTCSEEEECSCH
T ss_pred ccc-cCCCCCEEECCCC-cCCchhHHHHHh---------cCCCCCEEEecCCc
Confidence 222 3556666666666 4444322 2222 45666666666665
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.43 E-value=2.9e-07 Score=92.15 Aligned_cols=167 Identities=21% Similarity=0.175 Sum_probs=93.4
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+++|++|++++|.+.. +. ..+++|++|++++|. ++. ++.+.. +|++|+++++. ...
T Consensus 79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~---------l~~--ip~l~~--~L~~L~Ls~N~------l~~ 134 (571)
T 3cvr_A 79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR---------LST--LPELPA--SLKHLDVDNNQ------LTM 134 (571)
T ss_dssp CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC---------CSC--CCCCCT--TCCEEECCSSC------CSC
T ss_pred cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC---------CCC--cchhhc--CCCEEECCCCc------CCC
Confidence 4678888888776663 21 356788888888774 332 111222 78888886542 222
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLT 226 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 226 (488)
++. .+++|+.|+++++ .++.. +. .+++|+.|++++|.. +..+ .+ .++|+.|+++++ .+.
T Consensus 135 lp~--------~l~~L~~L~Ls~N-~l~~l--p~---~l~~L~~L~Ls~N~L-~~lp--~l---~~~L~~L~Ls~N-~L~ 193 (571)
T 3cvr_A 135 LPE--------LPALLEYINADNN-QLTML--PE---LPTSLEVLSVRNNQL-TFLP--EL---PESLEALDVSTN-LLE 193 (571)
T ss_dssp CCC--------CCTTCCEEECCSS-CCSCC--CC---CCTTCCEEECCSSCC-SCCC--CC---CTTCCEEECCSS-CCS
T ss_pred CCC--------cCccccEEeCCCC-ccCcC--CC---cCCCcCEEECCCCCC-CCcc--hh---hCCCCEEECcCC-CCC
Confidence 322 3677888888773 44431 11 466788888877642 2211 11 167888888774 443
Q ss_pred HHHHHHhhC-----CCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHH
Q 011317 227 NHAIKSLAS-----NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYL 282 (488)
Q Consensus 227 ~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l 282 (488)
..+. +.. .+.|+.|+++++ .++... ..+..+++|+.|+|++|.++......+
T Consensus 194 ~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp-~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 194 SLPA--VPVRNHHSEETEIFFRCREN-RITHIP-ENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp SCCC--CC--------CCEEEECCSS-CCCCCC-GGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred chhh--HHHhhhcccccceEEecCCC-cceecC-HHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 2111 111 122277777774 444322 234457777888887777766554444
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.40 E-value=2e-07 Score=78.64 Aligned_cols=56 Identities=21% Similarity=0.349 Sum_probs=27.1
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCC
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGC 298 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 298 (488)
+|+.|+++++ .+... ..+..+++|+.|++++|.++......+.. +++|+.|+++++
T Consensus 43 ~L~~L~Ls~N-~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~--l~~L~~L~L~~N 98 (176)
T 1a9n_A 43 QFDAIDFSDN-EIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA--LPDLTELILTNN 98 (176)
T ss_dssp CCSEEECCSS-CCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH--CTTCCEEECCSC
T ss_pred CCCEEECCCC-CCCcc--cccccCCCCCEEECCCCcccccCcchhhc--CCCCCEEECCCC
Confidence 5666666553 33332 34445556666666665554322111222 555555555553
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.39 E-value=2.4e-09 Score=107.71 Aligned_cols=102 Identities=25% Similarity=0.197 Sum_probs=59.8
Q ss_pred CCccEEecCCCCCCCH-HHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcc
Q 011317 288 TSLVKLSLRGCKRLTD-KCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASM 366 (488)
Q Consensus 288 ~~L~~L~l~~~~~l~~-~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 366 (488)
..|+.|+++++. ++. ..+.. +++|+.|+++++ .++.- ...+ ..+++|+.|++++| .++. +..+.
T Consensus 441 ~~L~~L~Ls~n~-l~~lp~~~~------l~~L~~L~Ls~N-~l~~l-p~~~-~~l~~L~~L~Ls~N-~l~~--lp~l~-- 505 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTVLCHLEQ------LLLVTHLDLSHN-RLRAL-PPAL-AALRCLEVLQASDN-ALEN--VDGVA-- 505 (567)
T ss_dssp TTCSEEECTTSC-CSSCCCGGG------GTTCCEEECCSS-CCCCC-CGGG-GGCTTCCEEECCSS-CCCC--CGGGT--
T ss_pred cCceEEEecCCC-CCCCcCccc------cccCcEeecCcc-ccccc-chhh-hcCCCCCEEECCCC-CCCC--CcccC--
Confidence 357777777753 332 11222 267777777773 55411 0112 25777888888777 5553 22222
Q ss_pred cccCCCCCCCCccEEeccCCCCCCHHH-HHHhhccCCCCccEEEecCCC
Q 011317 367 LVDDDRWYGSSIRLLDLYNCGGITQLA-FRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 367 ~~~~~~~~~~~L~~L~l~~~~~i~~~~-~~~l~~~~~~~L~~L~l~~~~ 414 (488)
.+++|+.|++++|. ++... ...+.. +++|+.|++++|.
T Consensus 506 -------~l~~L~~L~Ls~N~-l~~~~~p~~l~~--l~~L~~L~L~~N~ 544 (567)
T 1dce_A 506 -------NLPRLQELLLCNNR-LQQSAAIQPLVS--CPRLVLLNLQGNS 544 (567)
T ss_dssp -------TCSSCCEEECCSSC-CCSSSTTGGGGG--CTTCCEEECTTSG
T ss_pred -------CCCCCcEEECCCCC-CCCCCCcHHHhc--CCCCCEEEecCCc
Confidence 67778888888776 66543 344443 7788888887775
No 137
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.37 E-value=3.8e-06 Score=70.83 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=83.4
Q ss_pred HHHHHHHhccCCCCCeeEEecCCCCCCCHHHHHHHHhcC---CCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCcc
Q 011317 303 DKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCR---VPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIR 379 (488)
Q Consensus 303 ~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~---~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~ 379 (488)
++.+..+.... +.|++|+|++++.+.+.+...++..+ +.|+.|+|++| .++|.+..+++.++. ..+.|+
T Consensus 30 ~~~l~~ll~~n--~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~-----~N~tL~ 101 (197)
T 1pgv_A 30 ESCINRLREDD--TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIE-----TSPSLR 101 (197)
T ss_dssp HHHHHHHHTTC--SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHH-----HCSSCC
T ss_pred HHHHHHHHhcC--CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHh-----cCCccC
Confidence 34556665554 78999999985689999888776543 67999999999 999999999988877 788999
Q ss_pred EEeccCCCCCCHHHHHHhhcc--CCCCccEEEecCC
Q 011317 380 LLDLYNCGGITQLAFRWLKKP--YFPRLRWLGVTGS 413 (488)
Q Consensus 380 ~L~l~~~~~i~~~~~~~l~~~--~~~~L~~L~l~~~ 413 (488)
+|+|++|. |++.+...+..+ .-..|+.|+++++
T Consensus 102 ~L~L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 102 VLNVESNF-LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp EEECCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred eEecCCCc-CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 99999998 999988876652 2458999999865
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.27 E-value=3e-08 Score=95.24 Aligned_cols=259 Identities=13% Similarity=0.207 Sum_probs=122.9
Q ss_pred cCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCC
Q 011317 91 GLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGF 170 (488)
Q Consensus 91 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 170 (488)
.+..++.+.+... ++..+-.+|..| +|+.+.+..+ ...+.+..+ ..+ +|+.+.+..
T Consensus 111 ~~~~l~~i~ip~~----------i~~I~~~aF~~~-~L~~i~l~~~-------i~~I~~~aF----~~~-~L~~i~lp~- 166 (401)
T 4fdw_A 111 ILKGYNEIILPNS----------VKSIPKDAFRNS-QIAKVVLNEG-------LKSIGDMAF----FNS-TVQEIVFPS- 166 (401)
T ss_dssp ECSSCSEEECCTT----------CCEECTTTTTTC-CCSEEECCTT-------CCEECTTTT----TTC-CCCEEECCT-
T ss_pred ecCCccEEEECCc----------cCEehHhhcccC-CccEEEeCCC-------ccEECHHhc----CCC-CceEEEeCC-
Confidence 4566666666653 333333344454 5777777422 233333222 222 577777754
Q ss_pred CCCCHHHHHHHHHhCCCCceEEecCCC--CCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCC
Q 011317 171 CRVTDTGFKTILHSCSNLYKLRVSHGT--QLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCK 248 (488)
Q Consensus 171 ~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 248 (488)
.+...+. ..+..|++|+.+++..+. .+....+ .+.+|+.+.+.. .+...+..++..|++|+.+.+..
T Consensus 167 -~l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~-- 235 (401)
T 4fdw_A 167 -TLEQLKE-DIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE-- 235 (401)
T ss_dssp -TCCEECS-STTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--
T ss_pred -CccEehH-HHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--
Confidence 2222111 113557777777776432 1222221 145777777754 23332333455677777777765
Q ss_pred CCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCC-------CCHHHHHHHhccCCCCCeeEE
Q 011317 249 NLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKR-------LTDKCISALFDGTSKLQLQEL 321 (488)
Q Consensus 249 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~-------l~~~~~~~l~~~~~~~~L~~L 321 (488)
.+...+..++.+ .+|+.+.+... +...+-..+. +|++|+.+.+.+... +... .+.+| ++|+.+
T Consensus 236 ~l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~--~c~~L~~l~l~~~~~~~~~~~~I~~~----aF~~c--~~L~~l 305 (401)
T 4fdw_A 236 NVSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFY--YCPELAEVTTYGSTFNDDPEAMIHPY----CLEGC--PKLARF 305 (401)
T ss_dssp TCCEECTTTTTT-CCCSEEEEETT-CCEECTTTTT--TCTTCCEEEEESSCCCCCTTCEECTT----TTTTC--TTCCEE
T ss_pred CccCcccccccc-CCccEEEeCCC-ccEEChhHhh--CCCCCCEEEeCCccccCCcccEECHH----HhhCC--ccCCeE
Confidence 344444444544 56777777443 2211112222 377777777765321 1111 11223 667777
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHHHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccC
Q 011317 322 DLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPY 401 (488)
Q Consensus 322 ~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~ 401 (488)
.+.+ .++.-+-.++. .|++|+.+.+..+ ++..+-.++. .| +|+.|.+.++. +....-..+..
T Consensus 306 ~l~~--~i~~I~~~aF~-~c~~L~~l~lp~~--l~~I~~~aF~---------~~-~L~~l~l~~n~-~~~l~~~~F~~-- 367 (401)
T 4fdw_A 306 EIPE--SIRILGQGLLG-GNRKVTQLTIPAN--VTQINFSAFN---------NT-GIKEVKVEGTT-PPQVFEKVWYG-- 367 (401)
T ss_dssp CCCT--TCCEECTTTTT-TCCSCCEEEECTT--CCEECTTSSS---------SS-CCCEEEECCSS-CCBCCCSSCCC--
T ss_pred EeCC--ceEEEhhhhhc-CCCCccEEEECcc--ccEEcHHhCC---------CC-CCCEEEEcCCC-CcccccccccC--
Confidence 7764 23321111111 5677777777443 2211111111 55 77777777664 22211112221
Q ss_pred CC-CccEEEecC
Q 011317 402 FP-RLRWLGVTG 412 (488)
Q Consensus 402 ~~-~L~~L~l~~ 412 (488)
++ +++.|.+..
T Consensus 368 ~~~~l~~l~vp~ 379 (401)
T 4fdw_A 368 FPDDITVIRVPA 379 (401)
T ss_dssp SCTTCCEEEECG
T ss_pred CCCCccEEEeCH
Confidence 32 566666654
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.27 E-value=7.8e-08 Score=82.86 Aligned_cols=106 Identities=24% Similarity=0.271 Sum_probs=64.6
Q ss_pred HhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC-HHHHHHHh
Q 011317 232 SLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT-DKCISALF 310 (488)
Q Consensus 232 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~~~~~~l~ 310 (488)
.+..+++|+.|+++++ .+.... .+..+++|+.|++++|.++... ..+. .+++|+.|++++|. ++ -..+..+
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n~l~~l~-~~~~--~~~~L~~L~L~~N~-l~~l~~~~~l- 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRNLIKKIE-NLDA--VADTLEELWISYNQ-IASLSGIEKL- 114 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEEEECSCS-SHHH--HHHHCSEEEEEEEE-CCCHHHHHHH-
T ss_pred HHhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCCCccccc-chhh--cCCcCCEEECcCCc-CCcCCccccC-
Confidence 3446777777777764 333322 5556777888888777655321 1112 25678888888764 44 2333333
Q ss_pred ccCCCCCeeEEecCCCCCCCHHH-HHHHHhcCCCCCeEeecCC
Q 011317 311 DGTSKLQLQELDLSNLPHLSDNG-ILTLATCRVPISELRVRQC 352 (488)
Q Consensus 311 ~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~L~~L~l~~~ 352 (488)
++|++|++++ +.++... +..+. .+++|+.|++++|
T Consensus 115 -----~~L~~L~l~~-N~i~~~~~~~~l~-~l~~L~~L~l~~N 150 (198)
T 1ds9_A 115 -----VNLRVLYMSN-NKITNWGEIDKLA-ALDKLEDLLLAGN 150 (198)
T ss_dssp -----HHSSEEEESE-EECCCHHHHHHHT-TTTTCSEEEECSC
T ss_pred -----CCCCEEECCC-CcCCchhHHHHHh-cCCCCCEEEecCC
Confidence 6788888888 4565422 23333 5788888888888
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.05 E-value=1.5e-06 Score=74.37 Aligned_cols=40 Identities=33% Similarity=0.341 Sum_probs=18.0
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
.+++|+.|+++++ .+.......+..+++|+.|++++|.++
T Consensus 76 ~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 76 NMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp TCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 4444555555442 333333333444455555555554443
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.03 E-value=1.7e-07 Score=90.13 Aligned_cols=284 Identities=12% Similarity=0.152 Sum_probs=134.4
Q ss_pred CCCCcEEEeec--CccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccccc---
Q 011317 67 LPGIQKLCLSV--DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLI--- 141 (488)
Q Consensus 67 l~~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~--- 141 (488)
+.+|+++.+.. ..+++..+ ..|++|+.++|..+ ++..+-.++..|.+|+.+.+........
T Consensus 70 c~~L~~i~lp~~i~~I~~~aF----~~c~~L~~i~lp~~----------l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~a 135 (394)
T 4fs7_A 70 CRKVTEIKIPSTVREIGEFAF----ENCSKLEIINIPDS----------VKMIGRCTFSGCYALKSILLPLMLKSIGVEA 135 (394)
T ss_dssp CTTEEEEECCTTCCEECTTTT----TTCTTCCEECCCTT----------CCEECTTTTTTCTTCCCCCCCTTCCEECTTT
T ss_pred CCCceEEEeCCCccCcchhHh----hCCCCCcEEEeCCC----------ceEccchhhcccccchhhcccCceeeeccee
Confidence 67788888763 34444333 36788888888653 2322333455666666655532110000
Q ss_pred ------------ccccccChHHHHHHHHhCCCCCEEEEcCC-CCCCHHHHHHHHHhCCCCceEEecCCC-CCCHHHHHHH
Q 011317 142 ------------TYFRRVNDLGILLMADKCASMESICLGGF-CRVTDTGFKTILHSCSNLYKLRVSHGT-QLTDLVFHDI 207 (488)
Q Consensus 142 ------------~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 207 (488)
.....+.+. .+..|++|+.+.+... ..+... .+..+++|+.+.+...- .+.+. .
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~----aF~~c~~L~~i~l~~~~~~I~~~----~F~~c~~L~~i~l~~~~~~I~~~----~ 203 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDE----AFATCESLEYVSLPDSMETLHNG----LFSGCGKLKSIKLPRNLKIIRDY----C 203 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCBCCCCTTCCEECTT----T
T ss_pred eecccccccccCccccccchh----hhcccCCCcEEecCCccceeccc----cccCCCCceEEEcCCCceEeCch----h
Confidence 000111111 1234566666666431 111111 12445666666654321 11111 1
Q ss_pred HhcCCCCCEEEecCCCC-CCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCc--cchhHHHHHHh
Q 011317 208 SATSLSLTHVCLRWCNL-LTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSD--ISDVGVSYLRL 284 (488)
Q Consensus 208 ~~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--i~~~~~~~l~~ 284 (488)
...|..|+.+.+..... +.+ ....+.+|+.+.+.. .+...+..++..++.|+.+.+..+. +....+ .
T Consensus 204 F~~~~~L~~i~~~~~~~~i~~----~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F---~- 273 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYYLGD----FALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLRIGGSLF---Y- 273 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEECT----TTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCEECSCTT---T-
T ss_pred hccccccceeecCCCceEeeh----hhcccCCCceEEECC--CceecccccccccccceeEEcCCCcceeecccc---c-
Confidence 22445555555443211 111 011345666666654 2333333445566777777776542 222111 1
Q ss_pred hcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCC-CCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHHH
Q 011317 285 TVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIAL 363 (488)
Q Consensus 285 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~l 363 (488)
.++.++.+..... .+.... +..| .+|+.+.+... ..+.+..+. .|.+|+.+.+... ++..+-.++
T Consensus 274 -~~~~l~~~~~~~~-~i~~~~----F~~~--~~L~~i~l~~~i~~I~~~aF~----~c~~L~~i~lp~~--v~~I~~~aF 339 (394)
T 4fs7_A 274 -NCSGLKKVIYGSV-IVPEKT----FYGC--SSLTEVKLLDSVKFIGEEAFE----SCTSLVSIDLPYL--VEEIGKRSF 339 (394)
T ss_dssp -TCTTCCEEEECSS-EECTTT----TTTC--TTCCEEEECTTCCEECTTTTT----TCTTCCEECCCTT--CCEECTTTT
T ss_pred -cccccceeccCce-eecccc----cccc--ccccccccccccceechhhhc----CCCCCCEEEeCCc--ccEEhHHhc
Confidence 3566666655432 122211 1223 67888777541 112222222 5788888888543 221111111
Q ss_pred HcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCC
Q 011317 364 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 364 ~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
. .|.+|+.+.+..+ ++..+-..+.. |++|+.+.+...
T Consensus 340 ~---------~c~~L~~i~lp~~--l~~I~~~aF~~--C~~L~~i~lp~~ 376 (394)
T 4fs7_A 340 R---------GCTSLSNINFPLS--LRKIGANAFQG--CINLKKVELPKR 376 (394)
T ss_dssp T---------TCTTCCEECCCTT--CCEECTTTBTT--CTTCCEEEEEGG
T ss_pred c---------CCCCCCEEEECcc--ccEehHHHhhC--CCCCCEEEECCC
Confidence 1 6788888888654 44433445544 888888888654
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.00 E-value=1.6e-06 Score=74.09 Aligned_cols=110 Identities=12% Similarity=0.111 Sum_probs=59.2
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.+++++|+++++.+...........+++|++|+|++|. ++......+..+++|++|+++++. ...
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~~~~~~~l~~L~~L~Ls~N~------l~~ 92 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ---------LTGIEPNAFEGASHIQELQLGENK------IKE 92 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC---------CCCBCTTTTTTCTTCCEEECCSCC------CCE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC---------CCCcCHhHcCCcccCCEEECCCCc------CCc
Confidence 44777888877666543221112367788888887774 443333446667777777776432 122
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 197 (488)
+.... +..+++|+.|++++ +.+.... ...+..+++|++|+++++.
T Consensus 93 ~~~~~----~~~l~~L~~L~L~~-N~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 93 ISNKM----FLGLHQLKTLNLYD-NQISCVM-PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECSSS----STTCTTCCEEECCS-SCCCEEC-TTSSTTCTTCCEEECTTCC
T ss_pred cCHHH----hcCCCCCCEEECCC-CcCCeeC-HHHhhcCCCCCEEEeCCCC
Confidence 21111 13356677777776 3444321 1112345666666666554
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.98 E-value=7.3e-07 Score=76.26 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=17.0
Q ss_pred CCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 235 SNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
.+++|+.|+++++ .+.......+..+++|++|++++|.++
T Consensus 76 ~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 76 GASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp TCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred CcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 3444444444442 333332233334444444444444443
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.94 E-value=3.7e-06 Score=71.87 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=32.5
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCC
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRG 297 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~ 297 (488)
+..+++|+.|+++++ .+.......+..+++|++|++++|.++......+.. +++|+.|++++
T Consensus 50 ~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~--l~~L~~L~L~~ 111 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG--LKSLRLLSLHG 111 (193)
T ss_dssp GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT--CTTCCEEECCS
T ss_pred hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCC--CCCCCEEECCC
Confidence 445666666666663 444444444556666666666666554332222222 44555555554
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.93 E-value=5.2e-06 Score=69.85 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=50.6
Q ss_pred CCCCcEEEeecCccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 67 LPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 67 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
.++|++|+++++.+.......+ ..+++|++|++++|. ++......+..+++|++|+++++. ...
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~---------l~~~~~~~~~~l~~L~~L~l~~N~------l~~ 90 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQNQ---------IQSLPDGVFDKLTKLTILYLHENK------LQS 90 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSC---------CCCCCTTTTTTCTTCCEEECCSSC------CCC
T ss_pred CCCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCCc---------ceEeChhHccCCCccCEEECCCCC------ccc
Confidence 4567777777655543221111 346677777777663 332222234456666666665432 111
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 197 (488)
+... ....+++|+.|+++++ .+... ...++..+++|++|+++++.
T Consensus 91 ~~~~----~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 91 LPNG----VFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCTT----TTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cCHH----HhhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecCCC
Confidence 1111 1123556666666652 33321 11112334555555555543
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.88 E-value=9.3e-07 Score=84.80 Aligned_cols=215 Identities=9% Similarity=0.151 Sum_probs=121.3
Q ss_pred CCcEEEeec--CccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccc
Q 011317 69 GIQKLCLSV--DYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRR 146 (488)
Q Consensus 69 ~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~ 146 (488)
+|+.+.+.. ..++...+ ..|++|+.+++..+. ++..+-..+. +.+|+.+.+..+ ...
T Consensus 158 ~L~~i~lp~~l~~I~~~aF----~~c~~L~~l~l~~n~---------l~~I~~~aF~-~~~L~~l~lp~~-------l~~ 216 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDIF----YYCYNLKKADLSKTK---------ITKLPASTFV-YAGIEEVLLPVT-------LKE 216 (401)
T ss_dssp CCCEEECCTTCCEECSSTT----TTCTTCCEEECTTSC---------CSEECTTTTT-TCCCSEEECCTT-------CCE
T ss_pred CceEEEeCCCccEehHHHh----hCcccCCeeecCCCc---------ceEechhhEe-ecccCEEEeCCc-------hhe
Confidence 588888863 23443332 478899999998763 3332222333 578888888522 333
Q ss_pred cChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC-CCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 011317 147 VNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT-QLTDLVFHDISATSLSLTHVCLRWCNLL 225 (488)
Q Consensus 147 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 225 (488)
+....+ ..|++|+.+.+.. ++...+... +.. .+|+.+.+...- .+... .+..|++|+.+.+.+....
T Consensus 217 I~~~aF----~~~~~L~~l~l~~--~l~~I~~~a-F~~-~~L~~i~lp~~i~~I~~~----aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 217 IGSQAF----LKTSQLKTIEIPE--NVSTIGQEA-FRE-SGITTVKLPNGVTNIASR----AFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp ECTTTT----TTCTTCCCEECCT--TCCEECTTT-TTT-CCCSEEEEETTCCEECTT----TTTTCTTCCEEEEESSCCC
T ss_pred ehhhHh----hCCCCCCEEecCC--CccCccccc-ccc-CCccEEEeCCCccEEChh----HhhCCCCCCEEEeCCcccc
Confidence 333322 4578888888865 222211111 122 578888885421 12222 2347788888888663210
Q ss_pred ----CHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCC
Q 011317 226 ----TNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRL 301 (488)
Q Consensus 226 ----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l 301 (488)
...+..++..|++|+.+.+.+ .+...+..++.+|++|+.+.|..+ +...+...+. +| +|+.+.+.++. +
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~--~~-~L~~l~l~~n~-~ 357 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN--NT-GIKEVKVEGTT-P 357 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS--SS-CCCEEEECCSS-C
T ss_pred CCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC--CC-CCCEEEEcCCC-C
Confidence 011223455788999998875 466666677788899999998664 3222222222 36 89999988743 2
Q ss_pred CHHHHHHHhccCCCCCeeEEecCC
Q 011317 302 TDKCISALFDGTSKLQLQELDLSN 325 (488)
Q Consensus 302 ~~~~~~~l~~~~~~~~L~~L~l~~ 325 (488)
..-. .....++. .+++.|.+..
T Consensus 358 ~~l~-~~~F~~~~-~~l~~l~vp~ 379 (401)
T 4fdw_A 358 PQVF-EKVWYGFP-DDITVIRVPA 379 (401)
T ss_dssp CBCC-CSSCCCSC-TTCCEEEECG
T ss_pred cccc-cccccCCC-CCccEEEeCH
Confidence 2100 00111121 4677887765
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.84 E-value=5.4e-06 Score=69.75 Aligned_cols=12 Identities=0% Similarity=0.119 Sum_probs=6.8
Q ss_pred CCCCCeEeecCC
Q 011317 341 RVPISELRVRQC 352 (488)
Q Consensus 341 ~~~L~~L~l~~~ 352 (488)
+++|+.|++++|
T Consensus 123 l~~L~~L~l~~N 134 (177)
T 2o6r_A 123 LTSLQKIWLHTN 134 (177)
T ss_dssp CTTCCEEECCSS
T ss_pred CcccCEEEecCC
Confidence 455555555555
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.77 E-value=6e-06 Score=79.32 Aligned_cols=101 Identities=14% Similarity=0.278 Sum_probs=53.8
Q ss_pred CCcEEEeec--CccChhHHHHHHhcCCCccEEeccCC-CCCCCccccccChHHHHhhhcCCCccEEEccccccccccccc
Q 011317 69 GIQKLCLSV--DYITDAMVGTISQGLVSLTHLDLRDA-PLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFR 145 (488)
Q Consensus 69 ~L~~L~l~~--~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~ 145 (488)
.|+++.+.. ..+++..+ ..|.+|+.+.+..+ +. .++..+-.+|..|.+|+.+.+... ..
T Consensus 65 ~L~sI~iP~svt~Ig~~AF----~~C~~L~~i~~~~n~p~-------~l~~Ig~~aF~~c~~L~~i~~~~~-------~~ 126 (394)
T 4gt6_A 65 VLTSVQIPDTVTEIGSNAF----YNCTSLKRVTIQDNKPS-------CVKKIGRQAFMFCSELTDIPILDS-------VT 126 (394)
T ss_dssp CCCEEEECTTCCEECTTTT----TTCTTCCEEEEGGGCCC-------CCCEECTTTTTTCTTCCBCGGGTT-------CS
T ss_pred cCEEEEECCCeeEEhHHHh----hCCccCceEeecCCCCC-------eeeEechhhchhcccceeeccCCc-------cc
Confidence 477777763 34555443 46888888888654 21 233333445666777777766321 22
Q ss_pred ccChHHHHHHHHhCCCCCEEEEcCC-CCCCHHHHHHHHHhCCCCceEEecC
Q 011317 146 RVNDLGILLMADKCASMESICLGGF-CRVTDTGFKTILHSCSNLYKLRVSH 195 (488)
Q Consensus 146 ~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~ 195 (488)
.+....+ ..|.+|+.+.+... ..+.+. .+..+..|+.+.+..
T Consensus 127 ~I~~~aF----~~c~~L~~i~lp~~~~~I~~~----~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 127 EIDSEAF----HHCEELDTVTIPEGVTSVADG----MFSYCYSLHTVTLPD 169 (394)
T ss_dssp EECTTTT----TTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCT
T ss_pred eehhhhh----hhhcccccccccceeeeeccc----ceecccccccccccc
Confidence 2222211 34677777777541 122221 124566777777653
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.64 E-value=1.1e-06 Score=84.51 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=72.2
Q ss_pred hcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcC
Q 011317 90 QGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGG 169 (488)
Q Consensus 90 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 169 (488)
..|.+|+++.|... ++..+-.+|..|.+|+.+++..+ ...+.+..+ ..|++|+.+.+..
T Consensus 68 ~~c~~L~~i~lp~~----------i~~I~~~aF~~c~~L~~i~lp~~-------l~~I~~~aF----~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 68 QGCRKVTEIKIPST----------VREIGEFAFENCSKLEIINIPDS-------VKMIGRCTF----SGCYALKSILLPL 126 (394)
T ss_dssp TTCTTEEEEECCTT----------CCEECTTTTTTCTTCCEECCCTT-------CCEECTTTT----TTCTTCCCCCCCT
T ss_pred hCCCCceEEEeCCC----------ccCcchhHhhCCCCCcEEEeCCC-------ceEccchhh----cccccchhhcccC
Confidence 46889999999753 44444456788999999998532 223332222 3466777665543
Q ss_pred CCCCCHHHHHHHHHhCCCCceEEecCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCC
Q 011317 170 FCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKN 249 (488)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 249 (488)
.+...+... +..+..+..........+... ....|++|+.+.+... +...+...+..|++|+.+.+.. .
T Consensus 127 --~l~~i~~~a-F~~~~~~~~~~~~~~~~i~~~----aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~--~ 195 (394)
T 4fs7_A 127 --MLKSIGVEA-FKGCDFKEITIPEGVTVIGDE----AFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR--N 195 (394)
T ss_dssp --TCCEECTTT-TTTCCCSEEECCTTCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT--T
T ss_pred --ceeeeccee-eecccccccccCccccccchh----hhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC--C
Confidence 111111111 122322222222222212211 2335666777766542 1111122344566666666654 2
Q ss_pred CChHHHHhhcCCCCccEEEeCC
Q 011317 250 LGDEALRAISSLPQLKILLLDG 271 (488)
Q Consensus 250 ~~~~~~~~l~~~~~L~~L~l~~ 271 (488)
+...+..++..++.|+.+.+..
T Consensus 196 ~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 196 LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CCEECTTTTTTCTTCCBCCCCT
T ss_pred ceEeCchhhccccccceeecCC
Confidence 3333333444555555554443
No 150
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.55 E-value=1.3e-05 Score=83.22 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=57.1
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHh
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALF 310 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~ 310 (488)
+..+++|+.|+|+++ .+.... ..+..+++|++|+|++|.++... ..+. .+++|+.|+|+++. ++ +..+..+
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~~l~-~~~~~l~~L~~L~Ls~N~l~~lp-~~~~--~l~~L~~L~Ls~N~-l~~lp~~~~~l- 292 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIFNIS-ANIFKYDFLTRLYLNGNSLTELP-AEIK--NLSNLRVLDLSHNR-LTSLPAELGSC- 292 (727)
T ss_dssp --CCCCCCEEECTTS-CCSCCC-GGGGGCCSCSCCBCTTSCCSCCC-GGGG--GGTTCCEEECTTSC-CSSCCSSGGGG-
T ss_pred hccCCCCcEEECCCC-CCCCCC-hhhcCCCCCCEEEeeCCcCcccC-hhhh--CCCCCCEEeCcCCc-CCccChhhcCC-
Confidence 446677777777775 333221 22336677777777777665211 2233 36777777777653 33 1112222
Q ss_pred ccCCCCCeeEEecCCCCCCCHHHHHHHHhcCCCCCeEeecCCCCCCH
Q 011317 311 DGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGD 357 (488)
Q Consensus 311 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 357 (488)
++|++|+|+++ .++.-. .. ...+++|+.|+|++| .++.
T Consensus 293 -----~~L~~L~L~~N-~l~~lp-~~-~~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 293 -----FQLKYFYFFDN-MVTTLP-WE-FGNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp -----TTCSEEECCSS-CCCCCC-SS-TTSCTTCCCEECTTS-CCCS
T ss_pred -----CCCCEEECCCC-CCCccC-hh-hhcCCCccEEeCCCC-ccCC
Confidence 66777777663 443110 01 124666777777666 4543
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.52 E-value=3.5e-05 Score=73.95 Aligned_cols=281 Identities=12% Similarity=0.166 Sum_probs=139.9
Q ss_pred CCCCCcEEEeecC------ccChhHHHHHHhcCCCccEEeccCCCCCCCccccccChHHHHhhhcCCCccEEEccccccc
Q 011317 66 ILPGIQKLCLSVD------YITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEF 139 (488)
Q Consensus 66 ~l~~L~~L~l~~~------~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~ 139 (488)
.+.+|+.+.+..+ .++...+ ..|.+|+.+.+..+ ++..+-..+..|.+|+.+.+...
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF----~~c~~L~~i~~~~~----------~~~I~~~aF~~c~~L~~i~lp~~--- 147 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAF----MFCSELTDIPILDS----------VTEIDSEAFHHCEELDTVTIPEG--- 147 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTT----TTCTTCCBCGGGTT----------CSEECTTTTTTCTTCCEEECCTT---
T ss_pred CCccCceEeecCCCCCeeeEechhhc----hhcccceeeccCCc----------cceehhhhhhhhcccccccccce---
Confidence 3788999988632 2333332 36788888777653 44434445678889999988532
Q ss_pred ccccccccChHHHHHHHHhCCCCCEEEEcCC-CCCCHHHHHHHHHhCCCCceEEecCCCC-CCHHHHHHHHhcCCCCCEE
Q 011317 140 LITYFRRVNDLGILLMADKCASMESICLGGF-CRVTDTGFKTILHSCSNLYKLRVSHGTQ-LTDLVFHDISATSLSLTHV 217 (488)
Q Consensus 140 ~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L 217 (488)
...+.+..+ ..|.+|+.+.+... ..+....+ ...+|+.+.+..... +... ....|.+++..
T Consensus 148 ----~~~I~~~~F----~~c~~L~~i~~~~~~~~I~~~aF-----~~~~l~~i~ip~~~~~i~~~----af~~c~~l~~~ 210 (394)
T 4gt6_A 148 ----VTSVADGMF----SYCYSLHTVTLPDSVTAIEERAF-----TGTALTQIHIPAKVTRIGTN----AFSECFALSTI 210 (394)
T ss_dssp ----CCEECTTTT----TTCTTCCEEECCTTCCEECTTTT-----TTCCCSEEEECTTCCEECTT----TTTTCTTCCEE
T ss_pred ----eeeecccce----ecccccccccccceeeEeccccc-----cccceeEEEECCcccccccc----hhhhcccccee
Confidence 223333222 45788888888651 12222211 245688887764221 1111 12345566666
Q ss_pred EecCCCCCCHHH------------HHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC--ccchhHHHHHH
Q 011317 218 CLRWCNLLTNHA------------IKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS--DISDVGVSYLR 283 (488)
Q Consensus 218 ~l~~~~~~~~~~------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~i~~~~~~~l~ 283 (488)
............ .........+..+.+.. .+...+..++..+++|+.+.+... .+.... +.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~a---F~ 285 (394)
T 4gt6_A 211 TSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSVVSIGTGA---FM 285 (394)
T ss_dssp EECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTCCEECTTT---TT
T ss_pred cccccccccccceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEecccccceecCcc---cc
Confidence 554321100000 00000122334444432 233333445667788888887654 222222 22
Q ss_pred hhcCCCccEEecCCCCCCCHHHHHHHhccCCCCCeeEEecCCC-CCCCHHHHHHHHhcCCCCCeEeecCCCCCCHHHHHH
Q 011317 284 LTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNL-PHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIA 362 (488)
Q Consensus 284 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 362 (488)
.++.|+.+.+.. .++.-+-. .+.+| .+|+++.|... ..+.+..+. .|.+|+.+.|... ++..+-.+
T Consensus 286 --~c~~L~~i~l~~--~i~~I~~~-aF~~c--~~L~~i~lp~~v~~I~~~aF~----~C~~L~~i~ip~s--v~~I~~~a 352 (394)
T 4gt6_A 286 --NCPALQDIEFSS--RITELPES-VFAGC--ISLKSIDIPEGITQILDDAFA----GCEQLERIAIPSS--VTKIPESA 352 (394)
T ss_dssp --TCTTCCEEECCT--TCCEECTT-TTTTC--TTCCEEECCTTCCEECTTTTT----TCTTCCEEEECTT--CCBCCGGG
T ss_pred --cccccccccCCC--cccccCce-eecCC--CCcCEEEeCCcccEehHhHhh----CCCCCCEEEECcc--cCEEhHhH
Confidence 477888888754 23211111 12234 77888888641 122233333 6888888888543 22211112
Q ss_pred HHcccccCCCCCCCCccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCC
Q 011317 363 LASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGS 413 (488)
Q Consensus 363 l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~ 413 (488)
+. .|++|+.+++.++. .....+. .|.+|+.+.+..+
T Consensus 353 F~---------~C~~L~~i~~~~~~----~~~~~~~--~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 353 FS---------NCTALNNIEYSGSR----SQWNAIS--TDSGLQNLPVAPG 388 (394)
T ss_dssp GT---------TCTTCCEEEESSCH----HHHHTCB--CCCCC--------
T ss_pred hh---------CCCCCCEEEECCce----eehhhhh--ccCCCCEEEeCCC
Confidence 22 78888888888754 1223333 4778888877644
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.50 E-value=4.3e-05 Score=79.27 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCCCCCH--HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCC
Q 011317 160 ASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTD--LVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNT 237 (488)
Q Consensus 160 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 237 (488)
++++.|.|.+ ..+... ...++ ....|+.+.+........ .........+++|+.|+++++ .+...+ ..+..++
T Consensus 173 ~~~~~l~L~~-n~~~~~-~~~~l-~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~-~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFA-NGKDEA-NQALL-QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNL-QIFNIS-ANIFKYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTS-CCSCCC-GGGGGCC
T ss_pred CccceEEeeC-CCCCcc-hhhHh-hcCccCcccccCccccccceecChhhhccCCCCcEEECCCC-CCCCCC-hhhcCCC
Confidence 5677788876 344332 11211 123444444433211000 011233456789999999985 343221 1344789
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccchhHHHHHHhhcCCCccEEecCCCCCCC--HHHHHHHhccCCC
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLT--DKCISALFDGTSK 315 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~~ 315 (488)
+|++|+|+++ .++ .....+..+++|+.|+|++|.++.. ...+.. +++|+.|++++|. ++ +..+. .+
T Consensus 248 ~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~--l~~L~~L~L~~N~-l~~lp~~~~------~l 315 (727)
T 4b8c_D 248 FLTRLYLNGN-SLT-ELPAEIKNLSNLRVLDLSHNRLTSL-PAELGS--CFQLKYFYFFDNM-VTTLPWEFG------NL 315 (727)
T ss_dssp SCSCCBCTTS-CCS-CCCGGGGGGTTCCEEECTTSCCSSC-CSSGGG--GTTCSEEECCSSC-CCCCCSSTT------SC
T ss_pred CCCEEEeeCC-cCc-ccChhhhCCCCCCEEeCcCCcCCcc-ChhhcC--CCCCCEEECCCCC-CCccChhhh------cC
Confidence 9999999986 555 2235577899999999999988732 223334 8999999999864 54 11122 23
Q ss_pred CCeeEEecCCCCCCCHH
Q 011317 316 LQLQELDLSNLPHLSDN 332 (488)
Q Consensus 316 ~~L~~L~l~~~~~l~~~ 332 (488)
++|++|+|++ +.++..
T Consensus 316 ~~L~~L~L~~-N~l~~~ 331 (727)
T 4b8c_D 316 CNLQFLGVEG-NPLEKQ 331 (727)
T ss_dssp TTCCCEECTT-SCCCSH
T ss_pred CCccEEeCCC-CccCCC
Confidence 8999999999 567643
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.47 E-value=4.1e-05 Score=63.76 Aligned_cols=11 Identities=9% Similarity=0.008 Sum_probs=5.0
Q ss_pred CCCceEEecCC
Q 011317 186 SNLYKLRVSHG 196 (488)
Q Consensus 186 ~~L~~L~l~~~ 196 (488)
++|+.|+++++
T Consensus 30 ~~l~~L~L~~N 40 (170)
T 3g39_A 30 TTTQVLYLYDN 40 (170)
T ss_dssp TTCSEEECCSS
T ss_pred CCCcEEEcCCC
Confidence 34444554443
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.46 E-value=4.2e-05 Score=63.95 Aligned_cols=11 Identities=9% Similarity=0.284 Sum_probs=5.3
Q ss_pred CCCceEEecCC
Q 011317 186 SNLYKLRVSHG 196 (488)
Q Consensus 186 ~~L~~L~l~~~ 196 (488)
++|+.|+++++
T Consensus 33 ~~L~~L~Ls~N 43 (174)
T 2r9u_A 33 TDKQRLWLNNN 43 (174)
T ss_dssp TTCSEEECCSS
T ss_pred CCCcEEEeCCC
Confidence 34555555543
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.29 E-value=0.00022 Score=59.32 Aligned_cols=35 Identities=34% Similarity=0.360 Sum_probs=15.0
Q ss_pred CCCcEEEeecCccChhHHHHHHhcCCCccEEeccCC
Q 011317 68 PGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDA 103 (488)
Q Consensus 68 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 103 (488)
++|++|+|+.|.+.......+ ..+++|++|+|++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N 64 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVF-DRLTQLTRLDLDNN 64 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSS
T ss_pred CCCcEEEcCCCcCCccChhhh-cCcccCCEEECCCC
Confidence 445555555444433211111 13445555555554
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.27 E-value=0.00023 Score=59.39 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=19.2
Q ss_pred hCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC
Q 011317 158 KCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 197 (488)
.+++|+.|+|++ +.+... ....+..+++|++|+++++.
T Consensus 79 ~l~~L~~L~L~~-N~l~~l-~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 79 KLTQLTQLDLND-NHLKSI-PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCTTCCEEECCS-SCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred CcchhhEEECCC-Ccccee-CHHHhccccCCCEEEeCCCC
Confidence 355666666665 344322 11223445666666666654
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.73 E-value=0.00047 Score=64.66 Aligned_cols=36 Identities=14% Similarity=-0.031 Sum_probs=15.2
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccC
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRD 246 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (488)
.+++|+.|+++++ .+.......+..+++|+.|+|++
T Consensus 54 ~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 54 GLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred cccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 3445555555542 33222222233445555555544
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.70 E-value=0.00071 Score=63.46 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=32.3
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCCccc
Q 011317 210 TSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDIS 275 (488)
Q Consensus 210 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 275 (488)
.+++|+.|++++.+.+.......+..+++|+.|+|+++ .+.......+..+++|+.|+|++|.++
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 34455666665423333322223445555666666553 444444444555555666666555444
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.65 E-value=0.0057 Score=54.39 Aligned_cols=83 Identities=25% Similarity=0.308 Sum_probs=44.2
Q ss_pred hcCCCCCEEEecCCCCCCHH-HH-HHhhCCCCcCEEeccCCCCCChH-HHHhhcCCCCccEEEeCCCccch-----hHH-
Q 011317 209 ATSLSLTHVCLRWCNLLTNH-AI-KSLASNTGIKVLDLRDCKNLGDE-ALRAISSLPQLKILLLDGSDISD-----VGV- 279 (488)
Q Consensus 209 ~~~~~L~~L~l~~~~~~~~~-~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~-----~~~- 279 (488)
..+++|+.|+++++ .+... ++ ..+..+++|+.|+|+++ .+.+. .+..+..+ +|++|++++|.+.. ...
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCcchhHH
Confidence 45667777777763 33321 11 12336777777777774 44333 33333334 77777777776653 111
Q ss_pred HHHHhhcCCCccEEec
Q 011317 280 SYLRLTVITSLVKLSL 295 (488)
Q Consensus 280 ~~l~~~~~~~L~~L~l 295 (488)
..+.. .+|+|+.|+-
T Consensus 244 ~~il~-~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRE-RFPKLLRLDG 258 (267)
T ss_dssp HHHHH-HCTTCCEESS
T ss_pred HHHHH-HCcccCeECC
Confidence 12222 4677776654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.19 E-value=0.0052 Score=54.68 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=26.4
Q ss_pred HHHHHhCCCCCEEEEcCCCCCCHH-HHHHHHHhCCCCceEEecCCC
Q 011317 153 LLMADKCASMESICLGGFCRVTDT-GFKTILHSCSNLYKLRVSHGT 197 (488)
Q Consensus 153 ~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 197 (488)
..+...+++|+.|+|++ +.+... .+..++..+++|+.|+|+++.
T Consensus 163 ~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred HHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 33445677778887777 455431 233344567777777777654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.12 E-value=0.016 Score=54.84 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=78.8
Q ss_pred hhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEEEcCCCCCCHHHHHHHHHhCCCCceEEecCCC-CC
Q 011317 121 QINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGT-QL 199 (488)
Q Consensus 121 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~ 199 (488)
.+..+.+|+.+.+... ...+....+ ..|.+|+.+.+.. .+...+. ..+..+.+|+.+.+...- .+
T Consensus 212 ~f~~~~~l~~i~~~~~-------~~~i~~~~f----~~~~~L~~i~lp~--~v~~I~~-~aF~~~~~l~~i~l~~~i~~i 277 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-------VTTLGDGAF----YGMKALDEIAIPK--NVTSIGS-FLLQNCTALKTLNFYAKVKTV 277 (379)
T ss_dssp TTTTCSSCSEEECCTT-------CCEECTTTT----TTCSSCCEEEECT--TCCEECT-TTTTTCTTCCEEEECCCCSEE
T ss_pred ccccccccceeeeccc-------eeEEccccc----cCCccceEEEcCC--CccEeCc-cccceeehhccccccccceec
Confidence 3456778888887422 222222211 3577888888865 2222111 123567888888886421 12
Q ss_pred CHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC
Q 011317 200 TDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 272 (488)
Q Consensus 200 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 272 (488)
.. .....|++|+.+.+.+. .+...+-.++..|.+|+.+.+.. .+...+..++.+|++|+.+.+..+
T Consensus 278 ~~----~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 278 PY----LLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CT----TTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT
T ss_pred cc----ccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc
Confidence 21 12347788999988752 33322233456889999999865 455566667888899998888654
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.53 E-value=0.039 Score=52.10 Aligned_cols=182 Identities=9% Similarity=0.089 Sum_probs=105.9
Q ss_pred hcCCCccEEeccCCCCCCCcc---ccccChHHHHhhhcCCCccEEEcccccccccccccccChHHHHHHHHhCCCCCEEE
Q 011317 90 QGLVSLTHLDLRDAPLIEPRI---TFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESIC 166 (488)
Q Consensus 90 ~~~~~L~~L~L~~~~~~~~~~---~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~ 166 (488)
..+.+++.+.+.......... ...........+..+..+..+.+... ...+.... ...+.+|+.+.
T Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~----f~~~~~l~~i~ 223 (379)
T 4h09_A 155 YKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPST-------VKTVTAYG----FSYGKNLKKIT 223 (379)
T ss_dssp TTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTT-------CCEECTTT----TTTCSSCSEEE
T ss_pred cccccccccccccccceeecccceecccccceeccccccccccccccccc-------eeEEeecc----cccccccceee
Confidence 368899998887643210000 00000001112335666777766422 11222211 13478899988
Q ss_pred EcCCCCCCHHHHHHHHHhCCCCceEEecCCC-CCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHhhCCCCcCEEecc
Q 011317 167 LGGFCRVTDTGFKTILHSCSNLYKLRVSHGT-QLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLR 245 (488)
Q Consensus 167 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 245 (488)
+.. .+...+. ..+..+..|+.+.+...- .+... ....+.+|+.+.+.. .+...+..++..|++|+.+.+.
T Consensus 224 ~~~--~~~~i~~-~~f~~~~~L~~i~lp~~v~~I~~~----aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 224 ITS--GVTTLGD-GAFYGMKALDEIAIPKNVTSIGSF----LLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp CCT--TCCEECT-TTTTTCSSCCEEEECTTCCEECTT----TTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEEC
T ss_pred ecc--ceeEEcc-ccccCCccceEEEcCCCccEeCcc----ccceeehhccccccc--cceecccccccccccccccccc
Confidence 865 2222111 123568899999987531 12221 234678999999965 3333333456689999999997
Q ss_pred CCCCCChHHHHhhcCCCCccEEEeCCC--ccchhHHHHHHhhcCCCccEEecCC
Q 011317 246 DCKNLGDEALRAISSLPQLKILLLDGS--DISDVGVSYLRLTVITSLVKLSLRG 297 (488)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~L~~L~l~~~--~i~~~~~~~l~~~~~~~L~~L~l~~ 297 (488)
+. .+...+-.++.+|++|+.+.|... .+.+.. +. +|++|+.+.+..
T Consensus 295 ~~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~a---F~--~C~~L~~i~ip~ 342 (379)
T 4h09_A 295 NS-AIETLEPRVFMDCVKLSSVTLPTALKTIQVYA---FK--NCKALSTISYPK 342 (379)
T ss_dssp CT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTT---TT--TCTTCCCCCCCT
T ss_pred cc-ccceehhhhhcCCCCCCEEEcCccccEEHHHH---hh--CCCCCCEEEECC
Confidence 63 455556667889999999999764 333333 33 489999999864
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=71.53 E-value=1.3 Score=34.22 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=23.0
Q ss_pred CccEEeccCCCCCCHHHHHHhhccCCCCccEEEecCCC
Q 011317 377 SIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSV 414 (488)
Q Consensus 377 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~L~~L~l~~~~ 414 (488)
+|+.|+|++|. |+......+.. +++|+.|++.+|+
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~--l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDA--LPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGG--CTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhh--ccccCEEEecCCC
Confidence 57777777776 55544334443 6778888887776
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=70.58 E-value=3.3 Score=31.82 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=19.0
Q ss_pred CcCEEeccCCCCCChHHHHhhcCCCCccEEEeCCC
Q 011317 238 GIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGS 272 (488)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 272 (488)
+|+.|+|+++ .++......+..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 5666666653 444444444555566666666665
No 165
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=58.97 E-value=2.6 Score=35.37 Aligned_cols=16 Identities=38% Similarity=0.762 Sum_probs=10.5
Q ss_pred hHHHHHHHhcCCCCCC
Q 011317 457 VDELEQWLMEGEDESD 472 (488)
Q Consensus 457 ~~~~~~~~~~~~~~~~ 472 (488)
...+-.|+.++++|++
T Consensus 144 ~~pFI~WL~EAEEEs~ 159 (208)
T 2iu1_A 144 AEPFIKWLKEAEEESS 159 (208)
T ss_dssp HHHHHHHHHCSSCCCC
T ss_pred HHHHHHHHHccccccc
Confidence 3456788887766553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.79 E-value=13 Score=26.90 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=19.4
Q ss_pred hhCCCCcCEEeccCCCCCChHHHHhhcCCCCccEEEeCC
Q 011317 233 LASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDG 271 (488)
Q Consensus 233 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 271 (488)
+..|.+|+.+.|.. .++..+-.+|..|.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 33555666665554 34444444555555565555554
No 167
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=29.27 E-value=18 Score=31.92 Aligned_cols=12 Identities=17% Similarity=0.130 Sum_probs=6.6
Q ss_pred cCcchHHHHHHH
Q 011317 453 DYDEVDELEQWL 464 (488)
Q Consensus 453 ~~~~~~~~~~~~ 464 (488)
....++.+++.+
T Consensus 248 T~~Al~~Lee~l 259 (293)
T 3bbo_G 248 TEGTIQYLNQRY 259 (293)
T ss_dssp CTTHHHHHHHHS
T ss_pred EHHHHHHHHHHh
Confidence 344555666655
No 168
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=24.89 E-value=26 Score=28.46 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=8.1
Q ss_pred hHHHHHHHhcCCCCC
Q 011317 457 VDELEQWLMEGEDES 471 (488)
Q Consensus 457 ~~~~~~~~~~~~~~~ 471 (488)
...+-.|+.++++|+
T Consensus 150 ~~pFI~WL~eAEEEs 164 (177)
T 2ful_A 150 AKPFITWLETAESDD 164 (177)
T ss_dssp THHHHHHHHHCC---
T ss_pred HHHHHHHHHcccccc
Confidence 345678887755444
Done!