BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011319
         (488 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BJV|A Chain A, The Crystal Structure Of A Putative Pts Iia(Ptxa) From
           Streptococcus Mutans
          Length = 161

 Score = 34.3 bits (77), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 114 PESGGRRNCYMLRSITDPNYAAGFTDRTEADCLELLASRSSRIVSALA 161
           PE+G +R+ + L ++T+P     FTD  E   L  LA+ SS+I +++A
Sbjct: 71  PEAGVQRDAFSLVTLTEP---VTFTDGKEVQVLLALAATSSKIHTSVA 115


>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
          Length = 979

 Score = 29.3 bits (64), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 22/42 (52%)

Query: 280 DLGVVRAVRLWYAPVGGELAIEIKLKEGDSKLGFAISRTEEG 321
           DL  +R V+   AP+G EL   +  K  ++KLG     TE G
Sbjct: 342 DLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG 383


>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
           Of Bacillus
 pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
           Of Bacillus
          Length = 390

 Score = 28.5 bits (62), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 177 RKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVE-DTLARANAWLNASQATGVPIVFMN 235
           RK++V SV  ++   S  L  + ++ VA  Y DVE + +   NA   A Q    P  F  
Sbjct: 202 RKKKVTSVDKANVLESSRLWREVAEEVAKEYPDVELEHMLVDNA---AMQLIRNPRQFDV 258

Query: 236 IQTESLLTKISGETASSTVNSGSLSDLSNVANASLYGFEDYHG 278
           I TE++   I  + AS    S  +   ++++   L  +E  HG
Sbjct: 259 IVTENMFGDILSDEASMITGSLGMLPSASLSTDGLGLYEPVHG 301


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,027,645
Number of Sequences: 62578
Number of extensions: 481068
Number of successful extensions: 1015
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 4
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)