BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011319
(488 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis
thaliana GN=GSO1 PE=2 SV=1
Length = 1249
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 17/81 (20%)
Query: 29 GTSKAD-EWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRS-GVQKIL--- 83
G SK+D W M T ++ EEF IG G GS + YKA +NG + V+KIL
Sbjct: 933 GASKSDIRWEDIMEATHNLSEEFMIGSG-------GSGKVYKAELENGETVAVKKILWKD 985
Query: 84 ----HGSFKNKETSILVRVRR 100
+ SF ++E L R+R
Sbjct: 986 DLMSNKSF-SREVKTLGRIRH 1005
>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis
thaliana GN=GSO2 PE=2 SV=2
Length = 1252
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 17/81 (20%)
Query: 29 GTSKAD-EWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRS-GVQKIL--- 83
G +K+D +W M T + EEF IG G GS + YKA KNG + V+KIL
Sbjct: 930 GGAKSDIKWDDIMEATHYLNEEFMIGSG-------GSGKVYKAELKNGETIAVKKILWKD 982
Query: 84 ----HGSFKNKETSILVRVRR 100
+ SF N+E L +R
Sbjct: 983 DLMSNKSF-NREVKTLGTIRH 1002
>sp|Q6HLF2|LEU3_BACHK 3-isopropylmalate dehydrogenase OS=Bacillus thuringiensis subsp.
konkukian (strain 97-27) GN=leuB PE=3 SV=1
Length = 354
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 167 EGYVSYPWE---RRKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNA 223
E VSY ++ +RK++V S+ ++ S L ++ VA RY DVE +A A
Sbjct: 161 ERIVSYAFQLASKRKKKVTSIDKANVLESSKLWRTVTEEVALRYPDVELEHILVDA--AA 218
Query: 224 SQATGVPIVFMNIQTESLLTKISGETASSTVNSGSLSDLSNVANA----SLYGFEDYHG 278
+ P F I TE+L I + AS V +GSL L + ++A SLY E HG
Sbjct: 219 MELIRNPGRFDVIVTENLFGDILSDEAS--VLAGSLGMLPSASHAEKGPSLY--EPIHG 273
>sp|Q63DX7|LEU3_BACCZ 3-isopropylmalate dehydrogenase OS=Bacillus cereus (strain ZK /
E33L) GN=leuB PE=3 SV=1
Length = 354
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 167 EGYVSYPWE---RRKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNA 223
E VSY ++ +RK++V S+ ++ S L ++ VA RY DVE +A A
Sbjct: 161 ERIVSYAFQLASKRKKKVTSIDKANVLESSKLWRTVTEEVALRYPDVELEHILVDA--AA 218
Query: 224 SQATGVPIVFMNIQTESLLTKISGETASSTVNSGSLSDLSNVANA----SLYGFEDYHG 278
+ P F I TE+L I + AS V +GSL L + ++A SLY E HG
Sbjct: 219 MELIRNPGRFDVIVTENLFGDILSDEAS--VLAGSLGMLPSASHAEKGPSLY--EPIHG 273
>sp|Q73B99|LEU3_BACC1 3-isopropylmalate dehydrogenase OS=Bacillus cereus (strain ATCC
10987) GN=leuB PE=3 SV=1
Length = 354
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 167 EGYVSYPWE---RRKQEVLSVPNSSCFLSMLLLPKASDVVASRYNDVEDTLARANAWLNA 223
E VSY ++ +RK++V S+ ++ S L ++ VA RY DVE +A A
Sbjct: 161 ERIVSYAFQLASKRKKKVTSIDKANVLESSKLWRTVTEEVALRYPDVELEHILVDA--AA 218
Query: 224 SQATGVPIVFMNIQTESLLTKISGETASSTVNSGSLSDLSNVANA----SLYGFEDYHG 278
+ P F I TE+L I + AS V +GSL L + ++A SLY E HG
Sbjct: 219 MELIRNPGRFDVIVTENLFGDILSDEAS--VLAGSLGMLPSASHAEKGPSLY--EPIHG 273
>sp|A6LN73|MURB_THEM4 UDP-N-acetylenolpyruvoylglucosamine reductase OS=Thermosipho
melanesiensis (strain BI429 / DSM 12029) GN=murB PE=3
SV=1
Length = 292
Score = 32.0 bits (71), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 9/150 (6%)
Query: 234 MNIQTESLLTKISGETASSTVNSG-SLSDLS-NVANASLYGFEDYHGVDLGVVRAVRLWY 291
N+ + LT I E + SG SL L A GFE+ +G+ V A +
Sbjct: 72 FNVISTEKLTGIFVENDTIICESGLSLKKLCLYAAKEGFSGFENAYGIPGSVGGAAYMNA 131
Query: 292 APVGGELAIEIKLKE-GDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEA- 349
G E A I+ + D K + RTE F Y +++ ++E++ R G I+ ++
Sbjct: 132 GAFGWETAEMIEFVDVYDGKKVLRLDRTEMKFSYRNSIFKENEDLIILRVGFRIIKGDSY 191
Query: 350 --VSASKLLVVSRVSNQKVLPWIVSSTGAV 377
S K +++ RV Q P S G+V
Sbjct: 192 NIFSRMKQVMIKRVEKQ---PLEFPSAGSV 218
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,018,062
Number of Sequences: 539616
Number of extensions: 7084274
Number of successful extensions: 22171
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 22167
Number of HSP's gapped (non-prelim): 15
length of query: 488
length of database: 191,569,459
effective HSP length: 121
effective length of query: 367
effective length of database: 126,275,923
effective search space: 46343263741
effective search space used: 46343263741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)