Query 011319
Match_columns 488
No_of_seqs 35 out of 37
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 05:40:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n7e_A AMPA receptor interacti 94.0 0.13 4.4E-06 40.3 6.5 42 297-341 4-47 (97)
2 2pa1_A PDZ and LIM domain prot 93.2 0.081 2.8E-06 40.5 3.9 57 297-367 1-59 (87)
3 2kpk_A Membrane-associated gua 92.5 0.49 1.7E-05 39.3 8.2 55 300-367 20-77 (129)
4 1y7n_A Amyloid beta A4 precurs 91.6 0.12 4E-06 41.1 3.2 58 291-366 6-63 (90)
5 2i04_A Membrane-associated gua 91.5 0.12 4.3E-06 39.2 3.1 55 300-367 2-59 (85)
6 2ejy_A 55 kDa erythrocyte memb 91.4 0.13 4.5E-06 41.8 3.4 59 296-367 10-70 (97)
7 2eaq_A LIM domain only protein 90.8 0.22 7.4E-06 38.2 3.9 56 297-366 4-60 (90)
8 1ihj_A INAD; intermolecular di 90.7 0.2 7E-06 39.0 3.7 60 295-367 2-71 (98)
9 2q9v_A Membrane-associated gua 90.1 0.2 6.7E-06 38.5 3.1 53 300-366 4-60 (90)
10 2opg_A Multiple PDZ domain pro 89.9 0.2 6.9E-06 39.0 3.0 57 295-366 3-63 (98)
11 2jil_A GRIP1 protein, glutamat 89.8 0.23 7.9E-06 38.6 3.3 79 300-405 5-90 (97)
12 2dlu_A INAD-like protein; PDZ 89.8 1 3.4E-05 36.0 7.1 39 301-342 18-57 (111)
13 3gge_A PDZ domain-containing p 89.7 0.17 5.8E-06 42.3 2.6 40 301-343 8-47 (95)
14 1g9o_A NHE-RF; PDZ domain, com 89.3 0.26 8.7E-06 37.9 3.2 53 301-366 6-59 (91)
15 2jre_A C60-1 PDZ domain peptid 89.3 1 3.5E-05 35.7 6.8 41 298-341 14-61 (108)
16 2la8_A Inactivation-NO-after-p 89.3 0.25 8.7E-06 40.1 3.3 54 298-366 4-58 (106)
17 1mfg_A ERB-B2 interacting prot 89.3 0.4 1.4E-05 37.2 4.3 56 296-366 1-66 (95)
18 3sfj_A TAX1-binding protein 3; 89.3 0.22 7.4E-06 39.2 2.8 57 297-366 7-77 (104)
19 3i4w_A Disks large homolog 4; 89.2 0.23 7.9E-06 38.9 2.9 54 300-366 13-68 (104)
20 3kzd_A TIAM-1, T-lymphoma inva 89.1 0.23 8E-06 40.9 2.9 60 296-368 4-69 (94)
21 1ueq_A Membrane associated gua 88.6 0.22 7.5E-06 41.0 2.5 81 299-404 20-103 (123)
22 2qkv_A Inactivation-NO-after-p 88.6 0.39 1.3E-05 37.8 3.9 56 297-367 9-65 (96)
23 1m5z_A GRIP, AMPA receptor int 88.5 0.49 1.7E-05 36.3 4.3 56 300-368 10-66 (91)
24 2dm8_A INAD-like protein; PDZ 88.4 0.67 2.3E-05 37.2 5.2 40 300-342 19-62 (116)
25 2koj_A Partitioning defective 88.1 0.41 1.4E-05 38.1 3.7 55 299-366 12-72 (111)
26 1kwa_A Hcask/LIN-2 protein; PD 88.0 0.38 1.3E-05 37.5 3.4 54 300-367 5-59 (88)
27 1wg6_A Hypothetical protein (r 87.9 0.48 1.6E-05 39.5 4.2 63 291-366 17-88 (127)
28 1v62_A KIAA1719 protein; struc 87.9 0.34 1.2E-05 39.6 3.2 84 293-404 12-99 (117)
29 2awx_A Synapse associated prot 87.7 0.36 1.2E-05 38.3 3.2 55 299-366 4-66 (105)
30 2gzv_A PRKCA-binding protein; 87.7 1.5 5.2E-05 35.9 7.0 62 289-366 18-83 (114)
31 2vwr_A Ligand of NUMB protein 87.6 0.45 1.5E-05 36.9 3.6 54 300-366 7-62 (95)
32 1wha_A KIAA0147 protein, scrib 87.3 0.34 1.2E-05 38.5 2.8 41 300-343 9-58 (105)
33 2g5m_B Neurabin-2; spinophilin 87.2 0.44 1.5E-05 38.2 3.4 78 300-404 6-92 (113)
34 3l4f_D SH3 and multiple ankyri 87.1 0.72 2.5E-05 38.8 4.8 49 306-367 36-98 (132)
35 2f5y_A Regulator of G-protein 87.1 0.28 9.5E-06 38.0 2.1 51 302-367 7-57 (91)
36 1rgw_A ZAsp protein; PDZ, cyph 87.0 0.29 9.9E-06 37.0 2.1 55 299-367 2-58 (85)
37 2pkt_A PDZ and LIM domain prot 86.8 0.56 1.9E-05 36.1 3.7 55 299-367 4-60 (91)
38 2fe5_A Presynaptic protein SAP 86.7 0.49 1.7E-05 36.4 3.3 55 300-367 5-67 (94)
39 1wf8_A Neurabin-I; PDZ domain, 86.5 0.5 1.7E-05 37.6 3.4 78 301-405 12-98 (107)
40 1d5g_A Human phosphatase HPTP1 86.3 0.43 1.5E-05 36.9 2.8 55 300-367 7-67 (96)
41 2byg_A Channel associated prot 86.1 0.54 1.8E-05 38.6 3.5 53 301-366 27-87 (117)
42 3egg_C Spinophilin; PP1, serin 85.9 0.38 1.3E-05 42.7 2.6 41 300-343 82-131 (170)
43 2djt_A Unnamed protein product 85.7 0.51 1.8E-05 37.2 3.0 56 299-367 12-72 (104)
44 2w4f_A Protein LAP4; structura 85.5 0.6 2E-05 36.1 3.3 52 302-366 7-66 (97)
45 2z17_A Pleckstrin homology SEC 85.5 0.61 2.1E-05 36.9 3.4 47 308-367 26-81 (104)
46 2d92_A INAD-like protein; PDZ 85.4 0.56 1.9E-05 37.6 3.2 39 301-342 18-63 (108)
47 3b76_A E3 ubiquitin-protein li 85.4 0.61 2.1E-05 38.7 3.5 65 288-367 17-87 (118)
48 2he4_A Na(+)/H(+) exchange reg 85.3 0.61 2.1E-05 35.8 3.2 54 301-367 7-61 (90)
49 1uhp_A Hypothetical protein KI 85.1 0.66 2.2E-05 36.9 3.4 59 295-366 5-74 (107)
50 1q7x_A PDZ2B domain of PTP-BAS 85.1 0.48 1.6E-05 37.7 2.6 54 300-366 11-75 (108)
51 2jik_A Synaptojanin-2 binding 84.9 0.68 2.3E-05 36.3 3.4 54 301-367 10-71 (101)
52 2uzc_A Human pdlim5, PDZ and L 84.7 0.73 2.5E-05 35.1 3.4 55 300-368 5-61 (88)
53 2fne_A Multiple PDZ domain pro 84.6 0.66 2.2E-05 38.2 3.3 53 301-366 28-86 (117)
54 1x6d_A Interleukin-16; PDZ dom 84.5 3.3 0.00011 33.5 7.4 70 302-374 20-115 (119)
55 1uep_A Membrane associated gua 84.5 0.65 2.2E-05 36.8 3.1 55 300-367 11-68 (103)
56 3e17_A Tight junction protein 84.5 0.72 2.5E-05 35.9 3.3 38 299-343 3-41 (88)
57 1uit_A Human discs large 5 pro 84.4 0.72 2.5E-05 37.2 3.4 54 301-367 22-75 (117)
58 2i1n_A Discs, large homolog 3; 84.2 0.68 2.3E-05 36.3 3.1 53 301-366 7-67 (102)
59 2q3g_A PDZ and LIM domain prot 84.1 0.89 3E-05 34.8 3.6 53 301-367 6-60 (89)
60 2dmz_A INAD-like protein; PDZ 84.0 0.9 3.1E-05 37.3 3.9 79 301-406 18-105 (129)
61 3r0h_A INAD, inactivation-NO-a 83.9 1.2 4.1E-05 38.6 4.8 70 309-406 125-195 (206)
62 1ufx_A KIAA1526 protein; PDZ d 83.7 0.59 2E-05 37.7 2.6 40 301-343 9-52 (103)
63 2ego_A General receptor for ph 83.7 0.94 3.2E-05 35.4 3.7 77 301-404 7-93 (96)
64 3axa_A Afadin, nectin-3, prote 83.6 0.78 2.7E-05 36.3 3.2 48 306-366 18-71 (106)
65 3o46_A Maguk P55 subfamily mem 83.4 0.77 2.6E-05 35.6 3.0 33 307-342 13-47 (93)
66 3r68_A Na(+)/H(+) exchange reg 83.2 0.59 2E-05 36.0 2.3 54 301-367 8-62 (95)
67 1wfg_A Regulating synaptic mem 83.1 1.3 4.4E-05 37.1 4.5 33 307-342 46-84 (131)
68 3tsv_A Tight junction protein 83.0 0.66 2.3E-05 38.7 2.7 51 306-369 36-86 (124)
69 1vb7_A PDZ and LIM domain 2; P 82.9 0.5 1.7E-05 36.8 1.8 82 295-404 3-86 (94)
70 2yt7_A Amyloid beta A4 precurs 82.8 1.5 5.2E-05 34.7 4.6 54 299-366 12-70 (101)
71 1um1_A KIAA1849 protein, RSGI 82.8 0.94 3.2E-05 36.1 3.4 54 300-366 10-69 (110)
72 2kv8_A RGS12, regulator of G-p 82.6 0.36 1.2E-05 36.5 0.9 53 300-367 4-56 (83)
73 2qg1_A Multiple PDZ domain pro 82.3 0.8 2.7E-05 35.2 2.8 56 297-366 5-62 (92)
74 2r4h_A Membrane-associated gua 82.1 0.95 3.2E-05 36.6 3.2 62 291-367 19-83 (112)
75 2iwn_A Multiple PDZ domain pro 81.9 0.73 2.5E-05 35.3 2.4 54 301-367 7-67 (97)
76 2dkr_A LIN-7 homolog B; LIN-7B 81.8 0.75 2.6E-05 35.3 2.4 53 302-367 9-64 (93)
77 1ujd_A KIAA0559 protein; PDZ d 81.7 1.1 3.7E-05 36.6 3.4 45 309-366 30-82 (117)
78 2eno_A Synaptojanin-2-binding 81.3 1 3.5E-05 36.6 3.2 53 301-366 20-80 (120)
79 1x5q_A LAP4 protein; PDZ domai 81.2 1.1 3.8E-05 35.7 3.3 54 300-366 17-78 (110)
80 2d90_A PDZ domain containing p 81.1 1 3.5E-05 35.4 3.0 54 300-366 8-62 (102)
81 1wf7_A Enigma homologue protei 81.1 0.67 2.3E-05 36.6 2.0 55 297-367 6-62 (103)
82 1wfv_A Membrane associated gua 81.1 1.4 4.9E-05 34.3 3.8 40 300-342 13-55 (103)
83 2v90_A PDZ domain-containing p 81.0 1.2 4E-05 34.6 3.3 53 301-366 6-62 (96)
84 2daz_A INAD-like protein; PDZ 80.9 1.5 5.1E-05 35.9 4.1 53 301-366 28-84 (124)
85 2kjd_A Sodium/hydrogen exchang 80.6 1.4 4.8E-05 35.9 3.8 55 299-366 10-65 (128)
86 1wif_A RSGI RUH-020, riken cDN 80.5 0.9 3.1E-05 38.8 2.7 54 299-366 28-82 (126)
87 1i16_A Interleukin 16, LCF; cy 80.3 1.3 4.5E-05 36.9 3.6 41 300-343 31-77 (130)
88 2vsp_A PDZ domain-containing p 79.8 0.33 1.1E-05 37.5 -0.2 76 302-404 7-83 (91)
89 2jxo_A Ezrin-radixin-moesin-bi 79.7 1.6 5.4E-05 34.0 3.7 52 302-366 13-65 (98)
90 3qe1_A Sorting nexin-27, G pro 79.4 1.3 4.3E-05 35.1 3.0 51 304-367 12-76 (107)
91 1va8_A Maguk P55 subfamily mem 79.3 1.4 4.9E-05 35.6 3.4 53 302-367 29-82 (113)
92 1tp5_A Presynaptic density pro 79.0 1.5 5E-05 35.4 3.4 54 301-367 17-72 (119)
93 1nf3_C PAR-6B; semi-CRIB motif 78.8 1.5 5.2E-05 36.3 3.5 46 308-366 41-98 (128)
94 2cs5_A Tyrosine-protein phosph 78.2 1.9 6.5E-05 34.8 3.8 54 300-366 17-75 (119)
95 2kom_A Partitioning defective 78.2 2 6.9E-05 35.3 4.0 55 299-366 31-91 (121)
96 2d8i_A T-cell lymphoma invasio 78.2 1.5 5.3E-05 36.4 3.3 45 310-367 30-77 (114)
97 1qau_A Neuronal nitric oxide s 78.1 1.4 4.9E-05 35.0 3.1 81 300-405 3-85 (112)
98 1uf1_A KIAA1526 protein; PDZ d 78.1 1.5 5.1E-05 36.0 3.2 58 295-366 19-78 (128)
99 1qav_A Alpha-1 syntrophin (res 77.9 1.8 6.3E-05 33.1 3.5 48 307-367 14-64 (90)
100 1r6j_A Syntenin 1; PDZ, membra 77.8 1.2 4.2E-05 35.6 2.5 71 302-404 8-79 (82)
101 2kl1_A YLBL protein; structure 77.7 5.3 0.00018 31.5 6.2 43 41-103 22-64 (94)
102 1x5n_A Harmonin; PDZ domain, u 77.5 2.1 7.1E-05 34.3 3.8 57 297-367 16-74 (114)
103 1n7t_A 99-MER peptide of densi 77.0 1 3.4E-05 35.5 1.8 52 300-366 13-74 (103)
104 3gsl_A Disks large homolog 4; 76.8 2.2 7.5E-05 36.1 4.0 58 296-366 98-163 (196)
105 3cbz_A Dishevelled-2; PDZ doma 76.8 1.1 3.6E-05 36.2 1.9 47 307-366 15-66 (108)
106 4amh_A Disks large homolog 1; 76.7 1.2 4.1E-05 35.8 2.2 50 304-366 8-65 (106)
107 3bpu_A Membrane-associated gua 76.4 1.9 6.7E-05 32.8 3.2 53 300-367 5-58 (88)
108 1wi4_A Synip, syntaxin binding 76.3 1.6 5.6E-05 35.3 2.9 51 302-366 19-74 (109)
109 3nfk_A Tyrosine-protein phosph 76.2 2.3 7.9E-05 33.5 3.7 46 309-367 29-78 (107)
110 2dls_A PDZ-rhogef, RHO guanine 76.1 2.3 8E-05 33.0 3.7 51 302-367 12-62 (93)
111 3k1r_A Harmonin; protein-prote 75.7 2 7E-05 37.8 3.6 54 300-367 88-143 (192)
112 1q3o_A Shank1; PDZ, GKAP, pept 75.7 1.9 6.5E-05 34.3 3.1 76 306-408 16-105 (109)
113 3i18_A LMO2051 protein; alpha- 75.6 15 0.00051 29.0 8.3 59 20-103 8-66 (100)
114 1b8q_A Protein (neuronal nitri 75.6 1.2 4.1E-05 36.5 1.9 41 299-342 9-51 (127)
115 3gsl_A Disks large homolog 4; 75.6 1.6 5.3E-05 37.0 2.7 54 301-367 8-69 (196)
116 2edp_A Fragment, shroom family 75.1 1.7 5.9E-05 34.3 2.7 54 299-366 12-68 (100)
117 1v5q_A GRIP1 homolog, glutamat 74.7 7.1 0.00024 31.9 6.4 40 299-341 16-62 (122)
118 1uez_A KIAA1526 protein; PDZ d 74.5 1.7 6E-05 34.0 2.6 50 305-367 17-68 (101)
119 1v6b_A Harmonin isoform A1; st 74.3 1.5 5.3E-05 35.9 2.3 73 309-405 28-105 (118)
120 1wi2_A Riken cDNA 2700099C19; 73.8 2.1 7.3E-05 33.9 3.0 54 301-367 18-74 (104)
121 2he4_A Na(+)/H(+) exchange reg 73.7 6.9 0.00023 29.8 5.7 41 41-103 46-88 (90)
122 4e34_A Golgi-associated PDZ an 73.6 3.2 0.00011 31.5 3.8 53 300-366 6-61 (87)
123 3hpk_A Protein interacting wit 73.4 3.1 0.00011 33.9 3.9 47 308-367 30-79 (125)
124 3khf_A Microtubule-associated 73.1 2.1 7.2E-05 33.3 2.7 52 302-366 6-66 (99)
125 2i6v_A General secretion pathw 72.1 8.5 0.00029 29.6 6.0 44 40-103 36-79 (87)
126 3cyy_A Tight junction protein 71.9 3.4 0.00012 31.4 3.6 53 298-367 4-57 (92)
127 2db5_A INAD-like protein; PDZ 71.8 2.5 8.6E-05 34.7 3.0 54 300-366 27-87 (128)
128 2pkt_A PDZ and LIM domain prot 71.5 8 0.00028 29.5 5.6 41 41-103 45-87 (91)
129 3r0h_A INAD, inactivation-NO-a 71.1 3.3 0.00011 35.8 3.8 60 293-368 15-80 (206)
130 2o2t_A Multiple PDZ domain pro 70.8 1.8 6.2E-05 34.8 1.9 46 308-366 31-82 (117)
131 2iwq_A Multiple PDZ domain pro 70.6 3.3 0.00011 34.4 3.5 71 278-366 10-92 (123)
132 2fcf_A Multiple PDZ domain pro 70.4 3.4 0.00012 32.2 3.4 45 309-366 16-72 (103)
133 3tsz_A Tight junction protein 70.3 3.3 0.00011 41.2 4.0 31 310-343 20-50 (391)
134 2eeh_A PDZ domain-containing p 70.3 3.4 0.00012 32.3 3.4 56 299-367 11-69 (100)
135 2ehr_A INAD-like protein; PDZ 69.9 3.8 0.00013 33.0 3.6 70 308-404 26-107 (117)
136 1uju_A Scribble; PDZ domain, c 69.5 2.2 7.5E-05 34.1 2.1 42 298-343 11-64 (111)
137 1wh1_A KIAA1095 protein; PDZ d 69.5 7.4 0.00025 31.9 5.3 32 308-342 31-67 (124)
138 2iwo_A Multiple PDZ domain pro 69.4 3.2 0.00011 34.2 3.2 63 291-367 19-87 (120)
139 2kjp_A Uncharacterized protein 69.3 7.4 0.00025 30.8 5.1 43 41-103 18-60 (91)
140 2rcz_A Tight junction protein 69.2 4.5 0.00015 29.7 3.6 46 305-367 9-55 (81)
141 2e7k_A Maguk P55 subfamily mem 69.1 2.8 9.7E-05 32.7 2.6 47 306-366 15-62 (91)
142 1b8q_A Protein (neuronal nitri 67.4 9.4 0.00032 31.1 5.5 46 38-104 49-96 (127)
143 1uew_A Membrane associated gua 66.3 4 0.00014 32.8 3.0 71 307-404 20-100 (114)
144 2eeg_A PDZ and LIM domain prot 66.0 2.1 7.3E-05 33.2 1.4 54 300-367 10-65 (94)
145 2vsv_A Rhophilin-2; scaffold p 65.8 2.7 9.2E-05 34.7 2.0 54 301-369 26-79 (109)
146 3ngh_A PDZ domain-containing p 64.9 3.4 0.00012 32.5 2.4 77 300-404 5-82 (106)
147 2edz_A PDZ domain-containing p 64.8 4.2 0.00014 32.7 2.9 79 299-405 16-95 (114)
148 1ujv_A Membrane associated gua 64.5 7.1 0.00024 30.7 4.2 53 299-367 11-63 (96)
149 2i4s_A General secretion pathw 63.6 14 0.00048 29.4 5.8 44 40-103 54-97 (105)
150 2edv_A FERM and PDZ domain-con 63.6 2.5 8.4E-05 33.2 1.3 80 296-405 6-87 (96)
151 2dc2_A GOPC, golgi associated 63.3 7.5 0.00026 30.8 4.1 48 306-366 18-68 (103)
152 2eei_A PDZ domain-containing p 63.2 2.7 9.1E-05 33.1 1.4 54 301-367 11-65 (106)
153 1whd_A RGS3, regulator of G-pr 61.5 1.6 5.6E-05 34.4 -0.1 51 302-367 19-69 (100)
154 1w9e_A Syntenin 1; cell adhesi 61.3 5.9 0.0002 33.7 3.3 55 301-369 7-62 (166)
155 2h2b_A Tight junction protein 60.7 7.9 0.00027 30.4 3.8 55 300-368 9-72 (107)
156 2qt5_A Glutamate receptor-inte 59.4 5.3 0.00018 34.7 2.8 61 295-369 6-69 (200)
157 2jxo_A Ezrin-radixin-moesin-bi 59.2 7.9 0.00027 29.9 3.5 45 41-104 51-95 (98)
158 1v5l_A PDZ and LIM domain 3; a 59.0 4.4 0.00015 32.0 2.0 47 307-366 13-61 (103)
159 1um7_A Synapse-associated prot 58.8 2.1 7.3E-05 33.8 0.2 54 301-367 18-73 (113)
160 1v5l_A PDZ and LIM domain 3; a 58.7 12 0.00042 29.4 4.6 44 39-104 45-90 (103)
161 2pzd_A Serine protease HTRA2; 58.3 16 0.00056 29.0 5.3 56 21-103 37-92 (113)
162 1qau_A Neuronal nitric oxide s 58.2 51 0.0017 25.9 8.1 48 38-104 42-89 (112)
163 2v90_A PDZ domain-containing p 57.9 16 0.00055 28.1 5.0 44 41-104 48-91 (96)
164 4amh_A Disks large homolog 1; 57.7 26 0.00088 27.9 6.4 60 21-103 34-93 (106)
165 1p1d_A PDZ45, glutamate recept 57.6 6.2 0.00021 34.3 2.9 55 300-367 8-70 (196)
166 3stj_A Protease DEGQ; serine p 56.7 16 0.00054 35.5 5.8 60 20-103 264-323 (345)
167 1wh1_A KIAA1095 protein; PDZ d 56.7 9.2 0.00032 31.3 3.6 44 39-103 65-108 (124)
168 2d90_A PDZ domain containing p 56.4 15 0.0005 28.7 4.6 54 27-103 37-90 (102)
169 3qik_A Phosphatidylinositol 3, 56.3 7.9 0.00027 32.7 3.2 77 302-403 21-97 (101)
170 2pa1_A PDZ and LIM domain prot 56.2 18 0.00062 27.3 5.0 44 40-103 43-86 (87)
171 2uzc_A Human pdlim5, PDZ and L 56.1 24 0.00082 26.6 5.7 43 41-103 45-87 (88)
172 2xkx_A Disks large homolog 4; 55.6 5.8 0.0002 42.1 2.8 39 300-341 61-106 (721)
173 2jil_A GRIP1 protein, glutamat 55.3 18 0.00063 27.7 5.0 46 39-104 49-94 (97)
174 2h2b_A Tight junction protein 54.9 36 0.0012 26.6 6.7 54 26-103 45-98 (107)
175 2eeh_A PDZ domain-containing p 54.1 24 0.00083 27.4 5.5 42 41-103 54-95 (100)
176 3shw_A Tight junction protein 54.1 6.9 0.00023 40.4 3.0 36 303-342 6-41 (468)
177 2fe5_A Presynaptic protein SAP 53.4 27 0.00092 26.5 5.6 14 38-51 49-62 (94)
178 2dls_A PDZ-rhogef, RHO guanine 53.3 36 0.0012 26.2 6.3 42 41-103 47-88 (93)
179 3nfk_A Tyrosine-protein phosph 53.3 24 0.00083 27.6 5.4 60 24-101 47-107 (107)
180 1tp5_A Presynaptic density pro 52.9 11 0.00037 30.3 3.4 13 39-51 55-67 (119)
181 2lob_A Golgi-associated PDZ an 57.9 2.9 0.0001 34.3 0.0 34 307-343 37-73 (112)
182 3soe_A Membrane-associated gua 52.5 13 0.00043 31.6 3.9 48 38-103 47-94 (113)
183 2q3g_A PDZ and LIM domain prot 52.5 23 0.00077 26.9 5.0 43 41-103 45-87 (89)
184 4fgm_A Aminopeptidase N family 52.1 27 0.00092 36.7 7.1 66 40-130 513-578 (597)
185 2l97_A HTRA, putative serine p 52.0 65 0.0022 26.8 8.2 45 39-103 72-116 (134)
186 2kv8_A RGS12, regulator of G-p 51.8 23 0.00079 26.5 4.9 42 41-102 41-82 (83)
187 2w4f_A Protein LAP4; structura 51.8 31 0.0011 26.3 5.8 43 41-103 52-94 (97)
188 1mfg_A ERB-B2 interacting prot 51.3 27 0.00092 26.7 5.3 26 21-51 37-62 (95)
189 3id1_A Regulator of sigma E pr 51.3 25 0.00085 27.7 5.2 45 39-103 18-62 (95)
190 2vz5_A TAX1-binding protein 3; 51.2 17 0.00058 30.7 4.5 45 41-104 82-126 (139)
191 1vae_A Rhophilin 2, rhophilin, 51.2 3.6 0.00012 33.7 0.3 73 305-405 22-94 (111)
192 2vz5_A TAX1-binding protein 3; 50.6 9.6 0.00033 32.3 2.9 58 321-404 64-121 (139)
193 2dlu_A INAD-like protein; PDZ 50.4 34 0.0012 27.0 5.9 46 39-104 55-100 (111)
194 3khf_A Microtubule-associated 50.4 26 0.00087 27.1 5.1 43 41-103 52-94 (99)
195 2qt5_A Glutamate receptor-inte 50.0 13 0.00044 32.2 3.6 79 299-404 107-192 (200)
196 2vsp_A PDZ domain-containing p 49.8 15 0.00051 28.1 3.6 43 41-103 45-87 (91)
197 1p1d_A PDZ45, glutamate recept 49.6 8.8 0.0003 33.4 2.5 58 296-367 107-169 (196)
198 2yub_A LIMK-2, LIM domain kina 49.3 16 0.00056 30.2 4.1 73 308-405 26-103 (118)
199 1wi4_A Synip, syntaxin binding 49.2 21 0.00073 28.7 4.6 50 38-103 57-106 (109)
200 3tsv_A Tight junction protein 49.2 15 0.00051 30.4 3.8 59 24-105 55-115 (124)
201 1wf7_A Enigma homologue protei 48.9 16 0.00055 28.6 3.8 43 41-103 47-89 (103)
202 1vb7_A PDZ and LIM domain 2; P 48.6 19 0.00065 27.7 4.1 44 40-103 47-90 (94)
203 2r4h_A Membrane-associated gua 48.5 27 0.00093 28.0 5.1 45 39-103 66-110 (112)
204 2zpm_A Regulator of sigma E pr 48.5 45 0.0015 25.2 6.1 43 40-103 21-63 (91)
205 1g9o_A NHE-RF; PDZ domain, com 48.3 40 0.0014 25.5 5.8 11 41-51 45-55 (91)
206 2yuy_A RHO GTPase activating p 48.2 3.3 0.00011 34.0 -0.3 33 321-366 61-93 (126)
207 3axa_A Afadin, nectin-3, prote 48.2 28 0.00094 27.3 5.0 48 38-105 54-101 (106)
208 1uew_A Membrane associated gua 48.0 20 0.00068 28.7 4.3 45 39-103 60-104 (114)
209 2vwr_A Ligand of NUMB protein 47.3 15 0.00053 28.1 3.4 14 38-51 45-58 (95)
210 2csj_A TJP2 protein; PDZ domai 47.2 15 0.00053 29.5 3.5 51 302-366 18-77 (117)
211 1ihj_A INAD; intermolecular di 46.9 30 0.001 26.5 5.0 45 38-102 53-97 (98)
212 2fcf_A Multiple PDZ domain pro 46.4 41 0.0014 26.0 5.7 44 38-103 55-100 (103)
213 1ujv_A Membrane associated gua 46.3 21 0.00071 28.0 4.0 48 38-103 45-92 (96)
214 2dm8_A INAD-like protein; PDZ 46.2 22 0.00075 28.2 4.2 46 39-104 60-105 (116)
215 2ego_A General receptor for ph 46.0 27 0.00091 27.0 4.6 41 41-101 55-95 (96)
216 2cs5_A Tyrosine-protein phosph 45.9 59 0.002 26.0 6.8 48 40-103 60-107 (119)
217 1z87_A Alpha-1-syntrophin; pro 45.9 12 0.00042 35.7 3.1 54 301-367 80-137 (263)
218 1w9e_A Syntenin 1; cell adhesi 45.4 24 0.00082 29.9 4.6 55 296-369 88-142 (166)
219 3cbz_A Dishevelled-2; PDZ doma 44.7 24 0.00082 28.2 4.2 49 38-103 49-97 (108)
220 2hga_A Conserved protein MTH13 43.7 73 0.0025 26.6 7.2 42 41-103 42-83 (125)
221 2edz_A PDZ domain-containing p 43.5 32 0.0011 27.4 4.8 43 41-103 56-98 (114)
222 3sfj_A TAX1-binding protein 3; 43.2 47 0.0016 25.7 5.6 40 41-101 63-104 (104)
223 1n7e_A AMPA receptor interacti 43.2 33 0.0011 26.4 4.7 46 38-103 46-91 (97)
224 1uit_A Human discs large 5 pro 42.9 38 0.0013 27.1 5.1 45 41-105 60-104 (117)
225 3rle_A Golgi reassembly-stacki 42.8 28 0.00096 30.9 4.8 71 307-405 93-168 (209)
226 1wha_A KIAA0147 protein, scrib 42.2 31 0.001 27.1 4.4 46 38-103 54-99 (105)
227 2krg_A Na(+)/H(+) exchange reg 42.1 11 0.00037 34.7 2.1 39 302-343 13-52 (216)
228 2yub_A LIMK-2, LIM domain kina 42.1 26 0.00089 28.9 4.2 42 40-103 63-106 (118)
229 1te0_A Protease DEGS; two doma 41.5 1E+02 0.0034 29.0 8.6 59 21-103 246-304 (318)
230 1wi2_A Riken cDNA 2700099C19; 41.4 37 0.0013 26.6 4.8 42 41-103 59-100 (104)
231 2qbw_A PDZ-fibronectin fusion 40.6 12 0.0004 32.2 1.9 43 310-366 3-55 (195)
232 2yt7_A Amyloid beta A4 precurs 39.4 81 0.0028 24.6 6.5 47 38-102 53-99 (101)
233 2d92_A INAD-like protein; PDZ 39.4 51 0.0017 26.1 5.4 47 38-103 60-106 (108)
234 2qbw_A PDZ-fibronectin fusion 39.3 1.1E+02 0.0039 26.0 7.9 26 21-51 26-51 (195)
235 3pv2_A DEGQ; trypsin fold, PDZ 39.0 34 0.0012 34.4 5.2 56 24-104 390-445 (451)
236 2dmz_A INAD-like protein; PDZ 37.8 33 0.0011 27.9 4.1 46 38-103 62-107 (129)
237 2csj_A TJP2 protein; PDZ domai 37.6 37 0.0013 27.2 4.3 54 26-103 52-105 (117)
238 2xkx_A Disks large homolog 4; 37.3 48 0.0017 35.1 6.3 37 302-341 311-348 (721)
239 2db5_A INAD-like protein; PDZ 37.2 42 0.0014 27.3 4.6 47 38-103 70-116 (128)
240 1v6b_A Harmonin isoform A1; st 37.2 35 0.0012 27.7 4.2 49 39-103 60-108 (118)
241 1ujd_A KIAA0559 protein; PDZ d 36.5 42 0.0014 27.0 4.5 46 38-103 65-110 (117)
242 1lcy_A HTRA2 serine protease; 35.7 56 0.0019 31.0 5.9 57 20-103 257-313 (325)
243 3k50_A Putative S41 protease; 35.6 17 0.00059 36.5 2.5 48 309-369 74-125 (403)
244 1gff_3 Bacteriophage G4 capsid 35.4 11 0.00038 25.5 0.7 10 284-293 12-21 (26)
245 4a8c_A Periplasmic PH-dependen 35.4 86 0.0029 31.2 7.4 54 26-104 369-422 (436)
246 1y8t_A Hypothetical protein RV 35.0 1.5E+02 0.0053 27.7 8.7 44 40-103 259-303 (324)
247 3soe_A Membrane-associated gua 34.5 25 0.00084 29.8 2.9 39 299-343 13-51 (113)
248 3k1r_A Harmonin; protein-prote 34.4 62 0.0021 28.3 5.6 54 24-103 114-169 (192)
249 1fc6_A Photosystem II D1 prote 33.5 34 0.0012 33.2 4.1 48 309-369 85-134 (388)
250 1wif_A RSGI RUH-020, riken cDN 33.4 75 0.0026 26.9 5.8 46 38-101 65-110 (126)
251 3suz_A Amyloid beta A4 precurs 33.1 9.2 0.00031 37.7 0.0 56 300-369 208-268 (388)
252 2p3w_A Probable serine proteas 32.7 72 0.0024 25.2 5.2 41 40-103 52-92 (112)
253 2eqs_A ATP-dependent RNA helic 32.5 46 0.0016 27.0 4.1 61 33-100 2-73 (103)
254 3rle_A Golgi reassembly-stacki 32.4 63 0.0022 28.7 5.4 53 40-115 129-182 (209)
255 3suz_A Amyloid beta A4 precurs 32.2 14 0.00048 36.4 1.2 40 296-343 295-334 (388)
256 4fgm_A Aminopeptidase N family 32.2 29 0.001 36.4 3.6 68 309-405 485-552 (597)
257 1j2r_A Hypothetical isochorism 32.2 66 0.0023 28.1 5.4 46 192-237 21-68 (199)
258 4fln_A Protease DO-like 2, chl 30.5 93 0.0032 32.7 7.0 77 19-112 277-354 (539)
259 3txy_A Isochorismatase family 30.4 42 0.0014 29.8 3.8 29 208-236 33-61 (199)
260 3ot4_A Putative isochorismatas 30.0 35 0.0012 31.6 3.4 31 208-238 65-95 (236)
261 1i16_A Interleukin 16, LCF; cy 29.6 91 0.0031 25.6 5.5 23 78-103 97-119 (130)
262 2je6_I RRP4, exosome complex R 27.6 33 0.0011 32.6 2.8 30 39-73 70-99 (251)
263 3oqp_A Putative isochorismatas 27.4 65 0.0022 29.2 4.6 29 208-236 28-56 (211)
264 3qo6_A Protease DO-like 1, chl 25.8 97 0.0033 29.6 5.7 45 40-104 279-323 (348)
265 3eef_A N-carbamoylsarcosine am 24.4 58 0.002 28.3 3.6 28 209-236 23-50 (182)
266 3egg_C Spinophilin; PP1, serin 23.3 99 0.0034 27.2 4.9 44 38-101 127-170 (170)
267 1m06_J J protein, small core p 22.1 11 0.00039 25.5 -1.0 9 285-293 12-20 (26)
268 2z0s_A Probable exosome comple 21.4 57 0.0019 30.3 3.1 30 39-73 62-91 (235)
269 4h17_A Hydrolase, isochorismat 21.1 77 0.0026 28.2 3.8 29 208-236 43-71 (197)
270 1im5_A 180AA long hypothetical 21.0 63 0.0021 27.9 3.1 28 209-236 25-52 (180)
271 3tsz_A Tight junction protein 20.9 1.8E+02 0.006 28.9 6.6 61 27-108 38-98 (391)
272 3kl2_A Putative isochorismatas 20.2 53 0.0018 29.9 2.6 28 210-237 54-81 (226)
No 1
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=93.99 E-value=0.13 Score=40.27 Aligned_cols=42 Identities=33% Similarity=0.418 Sum_probs=32.7
Q ss_pred eeeeEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhh
Q 011319 297 ELAIEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSG 341 (488)
Q Consensus 297 E~~lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsG 341 (488)
+..+++.++.+...|||.|...++ +-++|.+|.. ++||.++|
T Consensus 4 ~~~~~v~l~~~~~~lG~~i~~~~~~~~~~~V~~V~~---~spA~~aG 47 (97)
T 1n7e_A 4 AIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTK---GGLAERTG 47 (97)
T ss_dssp CCEEEEEEECTTSCCCEEEECCSSTTSCCEEEEECT---TSHHHHHT
T ss_pred ceEEEEEEEeCCCCcCEEEEcccCCCCCEEEEEECC---CCHHHHCC
Confidence 334555566667789999987765 5789999996 79999999
No 2
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=93.16 E-value=0.081 Score=40.54 Aligned_cols=57 Identities=14% Similarity=0.317 Sum_probs=43.1
Q ss_pred eeeeEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 297 ELAIEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 297 E~~lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
|+++++..+. ...|||.|....+ .-++|.+|.. ++||.++||+ .|-.++ .+.|++|-
T Consensus 1 ~~~~~v~~~~-~~~lG~~l~~~~~~~~g~~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v~ 59 (87)
T 2pa1_A 1 SMALTVDVAG-PAPWGFRITGGRDFHTPIMVTKVAE---RGKAKDADLR--------PGDIIV--AINGESAE 59 (87)
T ss_dssp CEEEEEEECS-SSCCSEEEEEEGGGTEEEEEEEECS---SSHHHHTTCC--------TTCEEE--EETTEEST
T ss_pred CcEEEEEECC-CCccCEEEecccCCCCCEEEEEECC---CChHHHcCCC--------CCCEEE--EECCEECC
Confidence 6788888864 6789999986554 4689999996 7999999984 565544 67777654
No 3
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=92.55 E-value=0.49 Score=39.30 Aligned_cols=55 Identities=25% Similarity=0.523 Sum_probs=38.4
Q ss_pred eEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 300 IEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+++.++.+...|||.|.-..+ ..++|.+|.. +.||+++| |+ .|-.++ .|.|++|-
T Consensus 20 ~~v~l~~~~~g~G~~i~g~~~~~~~v~V~~V~~---~spA~~aG~L~--------~GD~Il--~vng~~v~ 77 (129)
T 2kpk_A 20 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVL---DGPAALDGKME--------TGDVIV--SVNDTCVL 77 (129)
T ss_dssp EEEEEEECSSCCSEEEEEEEETTEEEEEEEECT---TSHHHHHSSCC--------TTCEEE--EETTEECT
T ss_pred EEEEEEECCCcccEEEeCccCCCCCEEEEEECC---CChHHHcCCCC--------CCCEEE--EECCEECC
Confidence 445555567789999986433 3599999996 79999999 74 455443 57777653
No 4
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=91.60 E-value=0.12 Score=41.09 Aligned_cols=58 Identities=19% Similarity=0.402 Sum_probs=44.0
Q ss_pred eccccceeeeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 291 YAPVGGELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 291 y~P~~~E~~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
|.|......+.|+.......|||.+. .| +|++|.. ++||.|+||+ .|-.++ .+.|++|
T Consensus 6 ~~~~~~~~~~~i~~~~~~~~lG~~~~---~G--~V~~V~~---~spA~~aGL~--------~GD~Il--~Ing~~v 63 (90)
T 1y7n_A 6 LETMGNVTTVLIRRPDLRYQLGFSVQ---NG--IICSLMR---GGIAERGGVR--------VGHRII--EINGQSV 63 (90)
T ss_dssp -CCCSSCEEEEEEESSTTSCCCEEEE---TT--EEEEECT---TSHHHHHTCC--------SSCEEE--EETTEEC
T ss_pred cCccCCcceEEEEeCCCccccCeEec---CC--EEEEECC---CCHHHHcCCC--------CCCEEE--EECCEEC
Confidence 56667777777888777889999883 47 8999996 7999999984 565554 6778776
No 5
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=91.50 E-value=0.12 Score=39.20 Aligned_cols=55 Identities=25% Similarity=0.523 Sum_probs=39.8
Q ss_pred eEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 300 IEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+++.++.+..-|||.|..-.+ ..++|.+|.. ++||.++| |+ .|-.++ .+.|++|-
T Consensus 2 ~~v~l~k~~~g~G~~i~~~~~~~~~~~V~~v~~---~spA~~aG~l~--------~GD~I~--~vng~~v~ 59 (85)
T 2i04_A 2 IHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVL---DGPAALDGKME--------TGDVIV--SVNDTCVL 59 (85)
T ss_dssp EEEEEECBTTBSSEEEEECCSTTBCEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEECT
T ss_pred EEEEEEECCCCCCEEEEcccCCCCCEEEEEECC---CChHHHcCCCC--------CCCEEE--EECCEECC
Confidence 566666677889999976333 3599999996 78999999 74 455443 57777664
No 6
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=91.40 E-value=0.13 Score=41.81 Aligned_cols=59 Identities=14% Similarity=0.303 Sum_probs=39.4
Q ss_pred ceeeeEeeecC-CCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 296 GELAIEIKLKE-GDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 296 ~E~~lEi~~~~-gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
|.|+..+.++- .+..|||.|...+++-++|++|.+ ++||+++| | +.|-.++ .+.|++|-
T Consensus 10 ~~~~~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~---gspA~~aG~L--------~~GD~Il--~ING~~v~ 70 (97)
T 2ejy_A 10 GHMVRLIQFEKVTEEPMGICLKLNEKQSCTVARILH---GGMIHRQGSL--------HVGDEIL--EINGTNVT 70 (97)
T ss_dssp ---CEEEEEEECSSSCCSEEEEECTTCCEEEEEECS---SSHHHHHTCC--------CTTCEEE--EETTBCCC
T ss_pred CCccEEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCC---CCHHHHcCCC--------CCCCEEE--EECCEECC
Confidence 55665555532 346899999876666789999996 79999999 7 3444433 36666553
No 7
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=90.79 E-value=0.22 Score=38.22 Aligned_cols=56 Identities=25% Similarity=0.470 Sum_probs=40.1
Q ss_pred eeeeEeeecCCC-cceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 297 ELAIEIKLKEGD-SKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 297 E~~lEi~~~~gd-tRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
|+-++|...++. ..|||.+...+.| ++|.+|.. ++||.++||+ .|-.++ .+.|++|
T Consensus 4 ~~~~~~~~~~~~~~~lG~~~~~~~~g-~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v 60 (90)
T 2eaq_A 4 DMRISINQTPGKSLDFGFTIKWDIPG-IFVASVEA---GSPAEFSQLQ--------VDDEII--AINNTKF 60 (90)
T ss_dssp EEEEEEECCTTCSSCCSEEEEEETTE-EEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEEC
T ss_pred ceEEEEEecCCCCCcccEEEEecCCC-EEEEEECC---CChHHHcCCC--------CCCEEE--EECCEEc
Confidence 566777766654 4799988755544 78999985 7999999984 455443 6777765
No 8
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=90.74 E-value=0.2 Score=38.96 Aligned_cols=60 Identities=25% Similarity=0.469 Sum_probs=42.5
Q ss_pred cceeeeEeeecC-CCcceeeeeeecc--------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCe
Q 011319 295 GGELAIEIKLKE-GDSKLGFAISRTE--------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQ 364 (488)
Q Consensus 295 ~~E~~lEi~~~~-gdtRlGfaIsRTE--------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~ 364 (488)
+||..-++.++. +...|||.|..-. +.-++|++|.. ++||+++| |+ .|-.++ .+.|+
T Consensus 2 ~ge~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~---~spA~~aG~L~--------~GD~I~--~ing~ 68 (98)
T 1ihj_A 2 AGELIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVP---DSPAHLCGRLK--------VGDRIL--SLNGK 68 (98)
T ss_dssp -CCEEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECT---TSHHHHHCSCC--------TTCEEE--EETTE
T ss_pred CCceEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCE
Confidence 467776777665 7778999996432 33689999986 79999999 73 455433 57777
Q ss_pred eec
Q 011319 365 KVL 367 (488)
Q Consensus 365 kVl 367 (488)
+|.
T Consensus 69 ~v~ 71 (98)
T 1ihj_A 69 DVR 71 (98)
T ss_dssp ECT
T ss_pred ECC
Confidence 663
No 9
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=90.08 E-value=0.2 Score=38.47 Aligned_cols=53 Identities=26% Similarity=0.376 Sum_probs=37.2
Q ss_pred eEeeecCCCcceeeeeeec---ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 300 IEIKLKEGDSKLGFAISRT---EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRT---EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.++.++.+...|||.|.-- .+| ++|.+|.. ++||+++| |+ .|-.++ .+.|+.|
T Consensus 4 ~~v~l~~~~~g~G~~~~~g~~~~~~-~~V~~V~~---~spA~~aG~L~--------~GD~I~--~ing~~v 60 (90)
T 2q9v_A 4 QDIFLWRKETGFGFRILGGNEPGEP-IYIGHIVP---LGAADTDGRLR--------SGDELI--SVDGTPV 60 (90)
T ss_dssp EEEEEECBTTBCCEEEEECSSTTSC-EEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred EEEEEEECCCccCEEEEccccCCCC-EEEEEECC---CChHHHCCCCC--------CCCEEE--EECCEEC
Confidence 3455556667899999742 234 99999996 79999999 73 454443 5667655
No 10
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=89.89 E-value=0.2 Score=38.98 Aligned_cols=57 Identities=30% Similarity=0.474 Sum_probs=39.3
Q ss_pred cceeeeEeeecCCCcceeeeeeeccc---ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 295 GGELAIEIKLKEGDSKLGFAISRTEE---GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 295 ~~E~~lEi~~~~gdtRlGfaIsRTEE---GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+-++.|+|. .+...|||.|.-..+ +-++|.+|.. ++||.++| |+ .|-.++ .+.|++|
T Consensus 3 g~~~~v~l~--~~~~~lG~~l~~~~~~~~~gv~V~~V~~---~spA~~aG~l~--------~GD~I~--~vng~~v 63 (98)
T 2opg_A 3 GCETTIEIS--KGRTGLGLSIVGGSDTLLGAIIIHEVYE---EGAACKDGRLW--------AGDQIL--EVNGIDL 63 (98)
T ss_dssp CEEEEEEEE--CBTTBTCEEEEECTTSTTCSEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred CCEEEEEEE--ECCCcccEEEecCCCCCCCCEEEEEECC---CChHHhCCCCC--------CCCEEE--EECCEEC
Confidence 344445544 556789999986553 5689999996 79999999 73 455443 5666655
No 11
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=89.84 E-value=0.23 Score=38.60 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=50.6
Q ss_pred eEeeecCCCcceeeeeeecc------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceeee
Q 011319 300 IEIKLKEGDSKLGFAISRTE------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIVS 372 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTE------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmVs 372 (488)
+++.++.+...|||.|.... +.-++|.+|.. ++||+++| |+ .|-.++ .+.|+.+.-
T Consensus 5 ~~v~l~k~~~~lG~~i~~~~~~~~~~~~~~~V~~V~~---~spA~~aG~l~--------~GD~I~--~ing~~v~~---- 67 (97)
T 2jil_A 5 VEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRP---GGPADREGTIK--------PGDRLL--SVDGIRLLG---- 67 (97)
T ss_dssp EEEEEECBTTBCSEEEEEECCSCC--CEEEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEECSS----
T ss_pred EEEEEEeCCCccCEEEeCcccCCCCCCCCEEEEEECC---CCHHHHCCCCC--------CCCEEE--EECCEECCC----
Confidence 45555666789999997642 35689999996 79999999 83 455443 567765532
Q ss_pred cCCceeccCcccccccccccccccCceEEEEEE
Q 011319 373 STGAVRCFDTVSLSQKLSLHRHAKVPILLHVFL 405 (488)
Q Consensus 373 SsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm~ 405 (488)
+++..+.+.|. ....+|.|.|.-
T Consensus 68 -------~~~~~~~~~l~---~~g~~v~l~v~R 90 (97)
T 2jil_A 68 -------TTHAEAMSILK---QCGQEAALLIEY 90 (97)
T ss_dssp -------CCHHHHHHHHH---HSCSEEEEEEEE
T ss_pred -------CCHHHHHHHHH---cCCCeEEEEEEe
Confidence 22333333332 256677776653
No 12
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=89.78 E-value=1 Score=35.97 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=29.6
Q ss_pred EeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-H
Q 011319 301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-L 342 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L 342 (488)
++.++.+...|||.|.-..+.=++|.+|.. +.||+++| |
T Consensus 18 ~v~l~~~~~~lG~~l~~~~~~g~~V~~V~~---~spA~~aG~l 57 (111)
T 2dlu_A 18 EVELINDGSGLGFGIVGGKTSGVVVRTIVP---GGLADRDGRL 57 (111)
T ss_dssp EEEEECCSSCCCEEEECCSSSSBEEEEECT---TSSHHHHTCC
T ss_pred EEEEEeCCCccCEEEeccCCCCEEEEEECC---CCHHHHcCCC
Confidence 444445566799999866545589999996 68999999 5
No 13
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=89.71 E-value=0.17 Score=42.33 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=33.3
Q ss_pred EeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHH
Q 011319 301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLS 343 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~ 343 (488)
|+.+.-++.-|||.|+-+..|-|||+++.. |.+++|.|..
T Consensus 8 ~V~l~K~~~~LG~tI~~~g~g~~~I~rI~~---gg~a~r~g~L 47 (95)
T 3gge_A 8 EVNVYKSEDSLGLTITDNGVGYAFIKRIKD---GGVIDSVKTI 47 (95)
T ss_dssp EEEEECCSSCCCEEEECSSSSCCEEEEECT---TSHHHHCTTC
T ss_pred EEEEEECCCCceEEEEcCCCCcEEEEEEcC---CChHHhcCCC
Confidence 455556678999999977889999999996 7999999853
No 14
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=89.34 E-value=0.26 Score=37.91 Aligned_cols=53 Identities=28% Similarity=0.378 Sum_probs=37.8
Q ss_pred EeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 301 EIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.+.++.+..-|||.|.... +..++|.+|.. ++||+++||+ .|-.++ .+.|++|
T Consensus 6 ~v~l~r~~~g~G~~~~~~~~~~g~~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v 59 (91)
T 1g9o_A 6 LCCLEKGPNGYGFHLHGEKGKLGQYIRLVEP---GSPAEKAGLL--------AGDRLV--EVNGENV 59 (91)
T ss_dssp EEEEECBTTBCCEEEEECTTCSSEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEEC
T ss_pred EEEEEeCCCcccEEEEecCCCCCEEEEEECC---CCHHHHCCCC--------CCCEEE--EECCEEC
Confidence 3455556668999997654 46789999985 7999999984 455433 5666655
No 15
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=89.33 E-value=1 Score=35.68 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=30.4
Q ss_pred eeeEeeecCCCcceeeeeeec-------ccceEEEEEeecCCCCCccchhh
Q 011319 298 LAIEIKLKEGDSKLGFAISRT-------EEGFIYISTVIDDDENIPSTRSG 341 (488)
Q Consensus 298 ~~lEi~~~~gdtRlGfaIsRT-------EEGFiyVsSV~~~~~g~~a~RsG 341 (488)
+.++|..+.+...|||.|... .+.-++|.+|.. ++||.++|
T Consensus 14 ~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~---~spA~~aG 61 (108)
T 2jre_A 14 YSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIP---GSAAALDG 61 (108)
T ss_dssp EEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECT---TSHHHHHS
T ss_pred EEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCC---CCHHHHcC
Confidence 334443377788999999753 234689999996 78999999
No 16
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=89.30 E-value=0.25 Score=40.15 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=37.5
Q ss_pred eeeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 298 LAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 298 ~~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+.++|..+. ...|||.|.-.+.| ++|++|.. ++||+++| | +.|-.++ .+.|++|
T Consensus 4 ~~v~L~k~~-~~glG~~i~~~~~g-v~V~~V~~---gspA~~aG~L--------~~GD~Il--~Ing~~v 58 (106)
T 2la8_A 4 FNVDLMKKA-GKELGLSLSPNEIG-CTIADLIQ---GQYPEIDSKL--------QRGDIIT--KFNGDAL 58 (106)
T ss_dssp EEEEECCBS-SSTTCCEEEECSSS-EEEEECCT---TSCHHHHTTC--------CTTCEEE--EESSCBC
T ss_pred EEEEEEeCC-CCccCEEEEeCCCC-EEEEEECC---CCHHHHCCCC--------CCCCEEE--EECCEEC
Confidence 344554343 55699988776666 78999996 79999999 7 4555543 5677655
No 17
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=89.27 E-value=0.4 Score=37.21 Aligned_cols=56 Identities=20% Similarity=0.462 Sum_probs=39.1
Q ss_pred ceeeeEeeecCCCcceeeeeeec----------ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCee
Q 011319 296 GELAIEIKLKEGDSKLGFAISRT----------EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQK 365 (488)
Q Consensus 296 ~E~~lEi~~~~gdtRlGfaIsRT----------EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~k 365 (488)
|.+.+++.++.+. .|||.|..- .+.=++|.+|.. +.||++ ||+ .|-.++ .+.|++
T Consensus 1 gs~~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~---~spA~~-gL~--------~GD~I~--~vng~~ 65 (95)
T 1mfg_A 1 GSMEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQP---EGPASK-LLQ--------PGDKII--QANGYS 65 (95)
T ss_dssp CEEEEEEEEECSS-SCSEEEEECBTSCCCSSSTTCCCEEEEEECT---TSTTTT-TCC--------TTCEEE--EETTEE
T ss_pred CCeEEEEEECCCC-CCCEEEeCCcCccCCccccCCCCEEEEEECC---CCchhh-CCC--------CCCEEE--EECCEE
Confidence 4566777777755 899999852 223489999996 689999 984 454433 567766
Q ss_pred e
Q 011319 366 V 366 (488)
Q Consensus 366 V 366 (488)
|
T Consensus 66 v 66 (95)
T 1mfg_A 66 F 66 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 18
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=89.27 E-value=0.22 Score=39.20 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=37.3
Q ss_pred eeeeEeeecCCCcceeeeee-ec-------------ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeec
Q 011319 297 ELAIEIKLKEGDSKLGFAIS-RT-------------EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVS 362 (488)
Q Consensus 297 E~~lEi~~~~gdtRlGfaIs-RT-------------EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~ 362 (488)
++.++...+.+...|||.|. -+ .++-+||.+|.. ++||.++||+ .|-.++ .+.
T Consensus 7 ~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~---~spA~~aGl~--------~GD~I~--~in 73 (104)
T 3sfj_A 7 RVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSE---GGPAEIAGLQ--------IGDKIM--QVN 73 (104)
T ss_dssp EEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECT---TSHHHHHTCC--------TTCEEE--EET
T ss_pred EEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECC---CChHHHcCCC--------CCCEEE--EEC
Confidence 34444444555567999998 11 123489999996 7999999985 454443 566
Q ss_pred Ceee
Q 011319 363 NQKV 366 (488)
Q Consensus 363 g~kV 366 (488)
|++|
T Consensus 74 g~~v 77 (104)
T 3sfj_A 74 GWDM 77 (104)
T ss_dssp TEEC
T ss_pred CEEC
Confidence 6665
No 19
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=89.21 E-value=0.23 Score=38.94 Aligned_cols=54 Identities=30% Similarity=0.481 Sum_probs=38.8
Q ss_pred eEeeecCCCcceeeeeeecccc-eEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 300 IEIKLKEGDSKLGFAISRTEEG-FIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTEEG-FiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.++.++.+...|||.|....++ -++|.+|.. ++||+++| |+ .|-.++ .+.|++|
T Consensus 13 ~~v~l~k~~~glG~~~~~~~~~~gv~V~~V~~---~spA~~aG~l~--------~GD~I~--~vng~~v 68 (104)
T 3i4w_A 13 RRIVIHRGSTGLGFNIVGGEXGEGIFISFILA---GGPADLSGELR--------KGDQIL--SVNGVDL 68 (104)
T ss_dssp EEEEEECBTTBTSEEEEECC-CCCEEEEEECT---TSHHHHHCCCC--------TTEEEE--EETTEEC
T ss_pred EEEEEEeCCCccCEEEECCCCCCCEEEEEECC---CChHHhcCCCC--------CCCEEE--EECCEEC
Confidence 3455555567899999876653 589999996 79999999 73 455444 6777766
No 20
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=89.05 E-value=0.23 Score=40.93 Aligned_cols=60 Identities=23% Similarity=0.504 Sum_probs=41.8
Q ss_pred ceeeeEeeecCCCc---ceeeeeee-cccc--eEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecc
Q 011319 296 GELAIEIKLKEGDS---KLGFAISR-TEEG--FIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLP 368 (488)
Q Consensus 296 ~E~~lEi~~~~gdt---RlGfaIsR-TEEG--FiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlP 368 (488)
++..-.+.++-+++ .|||.|+. +++| -++|.+|.. ++||.++||+ .|-.+ =.+.|++|--
T Consensus 4 ~~~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~---~spA~~aGL~--------~GD~I--l~vng~~v~~ 69 (94)
T 3kzd_A 4 GKVTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKE---TGLASKKGLK--------AGDEI--LEINNRAADA 69 (94)
T ss_dssp CCEEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECT---TSHHHHTTCC--------TTCEE--EEETTEEGGG
T ss_pred ccceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECC---CCHHHHcCCC--------CCCEE--EEECCEECCC
Confidence 44555666666665 79999987 5554 599999996 7999999984 55543 3778887754
No 21
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=88.63 E-value=0.22 Score=41.00 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=50.4
Q ss_pred eeEeeecCCCcceeeeeeec--ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceeeecCC
Q 011319 299 AIEIKLKEGDSKLGFAISRT--EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTG 375 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRT--EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsG 375 (488)
.+++.++-+...|||.|..- .++.++|.+|.. +.||+++| |+ .|-.++ .|.|++|.-
T Consensus 20 ~~~v~l~~~~~glG~~~~~g~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~Il--~Vng~~v~~------- 79 (123)
T 1ueq_A 20 FLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIP---DGPAAQDGKME--------TGDVIV--YINEVCVLG------- 79 (123)
T ss_dssp EEEEEEECCTTSCSEEEECCSSSSCCCEEEEECT---TSHHHHTSCCC--------TTCEEE--EETTEECTT-------
T ss_pred EEEEEEEeCCCceeEEEecccCCCCCEEEEEECC---CCHHHHCCCCC--------CCCEEE--EECCEECCC-------
Confidence 35555666677899999853 345699999996 79999999 74 454443 467765532
Q ss_pred ceeccCcccccccccccccccCceEEEEE
Q 011319 376 AVRCFDTVSLSQKLSLHRHAKVPILLHVF 404 (488)
Q Consensus 376 aIrC~Dt~slsqkLslhr~a~~pI~lHvm 404 (488)
+++..+.+.|..+. ...+|.|.|.
T Consensus 80 ----~~~~~~~~~l~~~~-~g~~v~l~v~ 103 (123)
T 1ueq_A 80 ----HTHADVVKLFQSVP-IGQSVNLVLC 103 (123)
T ss_dssp ----SCHHHHHHHHHTSC-TTCEEEEEEE
T ss_pred ----CCHHHHHHHHHhCC-CCCeEEEEEE
Confidence 23334444443221 2466776665
No 22
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=88.60 E-value=0.39 Score=37.76 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=38.1
Q ss_pred eeeeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 297 ELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 297 E~~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++.++|.-+. ...|||.|...+.| ++|++|.. ++||+++| | +.|-.++ .+.|+.|-
T Consensus 9 ~~~v~l~~~~-~~glG~~~~~~~~g-v~V~~V~~---~spA~~aG~L--------~~GD~I~--~Ing~~v~ 65 (96)
T 2qkv_A 9 KFNVDLMKKA-GKELGLSLSPNEIG-CTIADLIQ---GQYPEIDSKL--------QRGDIIT--KFNGDALE 65 (96)
T ss_dssp CEEEEEECBT-TBCCCEEEEECSSS-EEEEEECT---TSCHHHHHHC--------CTTCEEE--EETTEECT
T ss_pred eEEEEEEeCC-CCCccEEEEeCCCc-EEEEEeCC---CChHHhcCCC--------CCCCEEE--EECCEECC
Confidence 4444444333 45689988776666 79999996 79999999 7 4555544 56776553
No 23
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=88.54 E-value=0.49 Score=36.30 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=38.3
Q ss_pred eEeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecc
Q 011319 300 IEIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLP 368 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlP 368 (488)
++|.-.++...|||.|.... +.-++|.+|.. ++||.++|| +.|-.++ .+.|++|--
T Consensus 10 v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~---~spA~~aGl--------~~GD~I~--~vng~~v~~ 66 (91)
T 1m5z_A 10 VTLYKDSGMEDFGFSVADGLLEKGVYVKNIRP---AGPGDLGGL--------KPYDRLL--QVNHVRTRD 66 (91)
T ss_dssp EEEECCTTCSSSSEEEEECTTSSCEEEEEECT---TSHHHHHTC--------CTTCEEE--EETTEECTT
T ss_pred EEEEECCCCCCccEEEEeccCCCCEEEEEECC---CCHHHHcCC--------CCCCEEE--EECCEECCC
Confidence 33333344468999998643 34589999996 699999997 4565543 777876643
No 24
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=88.35 E-value=0.67 Score=37.17 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=30.2
Q ss_pred eEeeecCCCcceeeeeeeccc---ceEEEEEeecCCCCCccchhh-H
Q 011319 300 IEIKLKEGDSKLGFAISRTEE---GFIYISTVIDDDENIPSTRSG-L 342 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTEE---GFiyVsSV~~~~~g~~a~RsG-L 342 (488)
.++.++.+...|||.|....+ +-++|.+|.. ++||.++| |
T Consensus 19 ~~v~l~~~~~glG~~l~~~~~~~~~gv~V~~V~~---~spA~~aG~L 62 (116)
T 2dm8_A 19 MIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYE---EGAAARDGRL 62 (116)
T ss_dssp EEEEEECCSSCCCCCCBCCTTSSCSSEECCCCCS---SSHHHHHTCC
T ss_pred EEEEEEECCCcccEEEeCCCCCCcCCEEEEEECC---CChHHhCCCC
Confidence 344455667889999986433 5689999986 79999999 6
No 25
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=88.08 E-value=0.41 Score=38.15 Aligned_cols=55 Identities=27% Similarity=0.535 Sum_probs=39.7
Q ss_pred eeEeeecCCCcceeeeeeeccc-----ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 299 AIEIKLKEGDSKLGFAISRTEE-----GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTEE-----GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.+++.++.+...|||.|....+ +-++|.+|.. ++||.++| | +.|-.++ .+.|++|
T Consensus 12 ~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~---~spA~~aG~l--------~~GD~I~--~ing~~v 72 (111)
T 2koj_A 12 RLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILP---RGAAIQDGRL--------KAGDRLI--EVNGVDL 72 (111)
T ss_dssp EEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECS---SSHHHHHCSS--------CTTCEEE--EETTEEC
T ss_pred EEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECC---CChHHHCCCC--------CCCCEEE--EECCEEC
Confidence 4455566667789999986542 4589999996 79999999 7 3455443 5777766
No 26
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=88.01 E-value=0.38 Score=37.51 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=38.2
Q ss_pred eEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccch-hhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 300 IEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTR-SGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~R-sGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++|.-.+ ...|||.|.-.++|-++|++|.+ ++||++ +|| +.|-.++ .+.|+.|.
T Consensus 5 V~l~K~~-~~~lG~~i~~~~~~~~~I~~V~~---gspA~~~agL--------~~GD~I~--~Ing~~v~ 59 (88)
T 1kwa_A 5 VQFQKNT-DEPMGITLKMNELNHCIVARIMH---GGMIHRQGTL--------HVGDEIR--EINGISVA 59 (88)
T ss_dssp EEEEECS-SSCCCEEEECSCGGGEEEEEECT---TSHHHHHTCC--------CTTCEEE--EETTEEGG
T ss_pred EEEEeCC-CCceeEEEEeCCCCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEECC
Confidence 4444333 35699999887778899999996 799999 777 4455443 36666653
No 27
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=87.93 E-value=0.48 Score=39.49 Aligned_cols=63 Identities=22% Similarity=0.420 Sum_probs=44.1
Q ss_pred eccccc-eeeeEeeec-CCCcceeeeeeecc------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEee
Q 011319 291 YAPVGG-ELAIEIKLK-EGDSKLGFAISRTE------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRV 361 (488)
Q Consensus 291 y~P~~~-E~~lEi~~~-~gdtRlGfaIsRTE------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv 361 (488)
|.|... +..+++.++ .+..-|||.|.-.. +.-|||.+|.. +.||+++| | +.|-.++ .|
T Consensus 17 ~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~---gspA~~aG~L--------~~GD~Il--~V 83 (127)
T 1wg6_A 17 LSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIH---GGAAFKDGRL--------RMNDQLI--AV 83 (127)
T ss_dssp SSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCS---SSSTHHHHTS--------CSCCBEE--EE
T ss_pred cCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECC---CCHHHHCCCC--------CCCCEEE--EE
Confidence 444433 456778876 77889999998544 24699999996 79999999 7 3455443 46
Q ss_pred cCeee
Q 011319 362 SNQKV 366 (488)
Q Consensus 362 ~g~kV 366 (488)
.|+.|
T Consensus 84 ng~~v 88 (127)
T 1wg6_A 84 NGETL 88 (127)
T ss_dssp TTEES
T ss_pred CCEEC
Confidence 66554
No 28
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=87.92 E-value=0.34 Score=39.61 Aligned_cols=84 Identities=20% Similarity=0.310 Sum_probs=51.5
Q ss_pred cccceeeeEeeecCCCcceeeeeeeccc---ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecc
Q 011319 293 PVGGELAIEIKLKEGDSKLGFAISRTEE---GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLP 368 (488)
Q Consensus 293 P~~~E~~lEi~~~~gdtRlGfaIsRTEE---GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlP 368 (488)
|..+.+.++|...++ ..|||.|....+ |-+||..|.. +.||+++| | +.|-.++ .+.|++|.
T Consensus 12 ~~~~~~~v~l~k~~~-~~lG~~i~~~~~~~~~~~~V~~V~~---~spA~~aG~l--------~~GD~Il--~Ing~~v~- 76 (117)
T 1v62_A 12 NASGPLMVEIVKTPG-SALGISLTTTSLRNKSVITIDRIKP---ASVVDRSGAL--------HPGDHIL--SIDGTSME- 76 (117)
T ss_dssp CSSSSEEEEEECCTT-CCCCCEEEEECCSSSCEEEEEECCT---TSHHHHHTCC--------CTTCBEE--EETTEETT-
T ss_pred CCCCcEEEEEEcCCC-CcccEEEEccCCCCCCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEECC-
Confidence 334445555555442 579999987533 6699999996 79999999 6 3444443 46666552
Q ss_pred eeeecCCceeccCcccccccccccccccCceEEEEE
Q 011319 369 WIVSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVF 404 (488)
Q Consensus 369 wmVsSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm 404 (488)
..++..+.+.|. .....|.|.|+
T Consensus 77 ----------~~~~~~~~~~l~---~~g~~v~l~v~ 99 (117)
T 1v62_A 77 ----------HCSLLEATKLLA---SISEKVRLEIL 99 (117)
T ss_dssp ----------SCCHHHHHHHHH---SCSSEEEEEEC
T ss_pred ----------CCCHHHHHHHHH---hCCCeEEEEEE
Confidence 123333444433 35677777664
No 29
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=87.73 E-value=0.36 Score=38.31 Aligned_cols=55 Identities=29% Similarity=0.526 Sum_probs=39.2
Q ss_pred eeEeeecCCCcceeeeeeecc-------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 299 AIEIKLKEGDSKLGFAISRTE-------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTE-------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.+++.++-+...|||.|..-. +.-++|.+|.. ++||+++| |+ .|-.++ .+.|++|
T Consensus 4 ~~~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v 66 (105)
T 2awx_A 4 IMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIE---GGAAHKDGKLQ--------IGDKLL--AVNSVSL 66 (105)
T ss_dssp EEEEEEECBTTBSSEEEEECBTSCSBTTBCCEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred EEEEEEEECCCCCCEEEeCccCCCCCCCCCCEEEEEECC---CCHHHHCCCCC--------CCCEEE--EECCEEC
Confidence 456777667789999998531 34589999996 79999999 73 455443 5666655
No 30
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=87.68 E-value=1.5 Score=35.90 Aligned_cols=62 Identities=21% Similarity=0.445 Sum_probs=38.1
Q ss_pred eeeccccceeeeEeeecCCC-cceeeeeeecccc--eEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCe
Q 011319 289 LWYAPVGGELAIEIKLKEGD-SKLGFAISRTEEG--FIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQ 364 (488)
Q Consensus 289 LWy~P~~~E~~lEi~~~~gd-tRlGfaIsRTEEG--FiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~ 364 (488)
+||.+.. +-++.++.+. ..|||.|....+. .++|.+|.. ++||+++| | +.|-.++ .+.|+
T Consensus 18 ~~~q~~~---~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~---gspA~~aG~L--------~~GD~I~--~Ing~ 81 (114)
T 2gzv_A 18 LYFQSMV---PGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFD---NTPAALDGTV--------AAGDEIT--GVNGR 81 (114)
T ss_dssp ----CCC---CEEEEEECCTTSCCSEEEEECCC--CCEEEEEECT---TSHHHHHCCC--------CTTCEEE--EETTE
T ss_pred eeeccCC---CEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECC---CChHHHCCCC--------CCCCEEE--EECCE
Confidence 5676653 2234444433 4599999865543 699999996 79999999 6 3454433 57777
Q ss_pred ee
Q 011319 365 KV 366 (488)
Q Consensus 365 kV 366 (488)
+|
T Consensus 82 ~v 83 (114)
T 2gzv_A 82 SI 83 (114)
T ss_dssp EC
T ss_pred EC
Confidence 77
No 31
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=87.55 E-value=0.45 Score=36.92 Aligned_cols=54 Identities=17% Similarity=0.436 Sum_probs=36.2
Q ss_pred eEeeecCCCcceeeeeee-cccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 300 IEIKLKEGDSKLGFAISR-TEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsR-TEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
++|.-......|||.|.. +++.-++|.+|.. ++||.++| |+ .|-.++ .+.|++|
T Consensus 7 v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v 62 (95)
T 2vwr_A 7 VALHKRDSGEQLGIKLVRRTDEPGVFILDLLE---GGLAAQDGRLS--------SNDRVL--AINGHDL 62 (95)
T ss_dssp EEEECSSTTCCCCEEEEECSSSCSEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred EEEEECCCCCcccEEEEeccCCCCEEEEEeCC---CChHHHCCCCC--------CCCEEE--EECCEEC
Confidence 344433334679999964 4455699999996 79999999 73 454433 5677655
No 32
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=87.30 E-value=0.34 Score=38.45 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=31.3
Q ss_pred eEeeecCCCcceeeeeeec--------ccceEEEEEeecCCCCCccchhh-HH
Q 011319 300 IEIKLKEGDSKLGFAISRT--------EEGFIYISTVIDDDENIPSTRSG-LS 343 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRT--------EEGFiyVsSV~~~~~g~~a~RsG-L~ 343 (488)
+++.++.++.-|||.|... .+.-+||.+|.. +.||+++| |+
T Consensus 9 ~~v~l~~~~~glG~~l~~g~~~~~~~~~~~gv~V~~V~~---~spA~~aG~L~ 58 (105)
T 1wha_A 9 HVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAE---GGAAHRAGTLQ 58 (105)
T ss_dssp EEEEECCCTTCCSCEEECCTTSCCSSTTCCSCEEEECCT---TSSHHHHSSCC
T ss_pred EEEEEEeCCCccCEEEEeccCCCcccCCCCCEEEEEeCC---CCHHHHcCCCC
Confidence 4556666677799999853 245689999996 79999999 74
No 33
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=87.23 E-value=0.44 Score=38.22 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=49.3
Q ss_pred eEeeecCCCcceeeeeee--------cccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeeccee
Q 011319 300 IEIKLKEGDSKLGFAISR--------TEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWI 370 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsR--------TEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwm 370 (488)
+++.++.+..-|||.|.- ..+.-+||.+|.. ++||+++| |+ .|-.++ .+.|++|.-
T Consensus 6 ~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~---~s~A~~aG~l~--------~GD~I~--~vng~~v~~-- 70 (113)
T 2g5m_B 6 FPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTE---GGAAHRDGRIQ--------VNDLLV--EVDGTSLVG-- 70 (113)
T ss_dssp EEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCT---TSHHHHHTCSC--------TTCBEE--EETTEECSS--
T ss_pred EEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEECCC--
Confidence 456666667889999986 1345689999996 79999999 83 454433 566666531
Q ss_pred eecCCceeccCcccccccccccccccCceEEEEE
Q 011319 371 VSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVF 404 (488)
Q Consensus 371 VsSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm 404 (488)
+ +..+....-+....+|.|.|.
T Consensus 71 ---------~---~~~~~~~~~~~~g~~v~l~v~ 92 (113)
T 2g5m_B 71 ---------V---TQSFAASVLRNTKGRVRFMIG 92 (113)
T ss_dssp ---------C---CHHHHHHHHHHSCSSCEEEEE
T ss_pred ---------C---CHHHHHHHHhcCCCeEEEEEE
Confidence 1 122222233335678887775
No 34
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=87.10 E-value=0.72 Score=38.85 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=35.6
Q ss_pred CCCcceeeeeeecccc--------------eEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 306 EGDSKLGFAISRTEEG--------------FIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 306 ~gdtRlGfaIsRTEEG--------------FiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.+...|||.|.-.... -++|++|.. ++||+++||+ .|-.++ .|.|+.|.
T Consensus 36 ~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~---gspA~~aGL~--------~GD~Il--~Vng~~v~ 98 (132)
T 3l4f_D 36 KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDE---GGVAWRAGLR--------MGDFLI--EVNGQNVV 98 (132)
T ss_dssp CTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECT---TSGGGGGTCC--------TTCEEE--EESSSBCT
T ss_pred CCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 3456899999877652 389999996 7999999984 454433 56777663
No 35
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=87.09 E-value=0.28 Score=38.04 Aligned_cols=51 Identities=22% Similarity=0.433 Sum_probs=36.0
Q ss_pred eeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 302 IKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+.++.+...|||.+.. +.| ++|.+|.. ++||.++||+ .|-.++ .+.|++|-
T Consensus 7 v~l~~~~~g~G~~l~~-~~~-~~V~~V~~---~spA~~aGl~--------~GD~I~--~vng~~v~ 57 (91)
T 2f5y_A 7 ITIPRGKDGFGFTICC-DSP-VRVQAVDS---GGPAERAGLQ--------QLDTVL--QLNERPVE 57 (91)
T ss_dssp EEEECBTTBTSEEEEC-SSS-CEEEEECT---TSHHHHHTCC--------TTCEEE--EETTEECT
T ss_pred EEEEeCCCCccEEEec-CCC-EEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 4444566779999864 455 89999996 7999999984 555443 56777653
No 36
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=87.05 E-value=0.29 Score=37.04 Aligned_cols=55 Identities=22% Similarity=0.308 Sum_probs=37.8
Q ss_pred eeEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 299 AIEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++++.++ +...|||.|..-.+ .-++|++|.. ++||.++||+ .|-.++ .+.|++|-
T Consensus 2 ~~~v~l~-~~~~~G~~l~gg~~~~~~v~V~~V~~---~spA~~aGl~--------~GD~I~--~vng~~v~ 58 (85)
T 1rgw_A 2 AYSVTLT-GPGPWGFRLQGGKDFNMPLTISRITP---GSKAAQSQLS--------QGDLVV--AIDGVNTD 58 (85)
T ss_dssp EEEEEEC-CSSCCCEEECCCGGGTSCCBEEEECT---TSHHHHSSCC--------CCSBEE--EETTEECT
T ss_pred cEEEEEe-CCCccCEEEEeccCCCCCeEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 4555564 56789999964322 2379999985 7899999984 555443 57777664
No 37
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=86.82 E-value=0.56 Score=36.09 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=38.8
Q ss_pred eeEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 299 AIEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+..+.++ ++..|||.|....+ .-++|.+|.. ++||+++||+ .|-.++ .+.|++|.
T Consensus 4 ~~~v~~~-~~~~~G~~l~~~~~~~~g~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v~ 60 (91)
T 2pkt_A 4 TQQIDLQ-GPGPWGFRLVGGKDFEQPLAISRVTP---GSKAALANLC--------IGDVIT--AIDGENTS 60 (91)
T ss_dssp EEEEEEE-SSSCCSEEEEEEGGGTEEEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEECT
T ss_pred cEEEEEC-CCCCCCEEEEccCCCCCCeEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 4455555 45789999986543 4589999996 7999999984 455443 67777664
No 38
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=86.71 E-value=0.49 Score=36.41 Aligned_cols=55 Identities=29% Similarity=0.546 Sum_probs=38.1
Q ss_pred eEeeecCCCcceeeeeeec-------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 300 IEIKLKEGDSKLGFAISRT-------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRT-------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.++.++.+..-|||.|... .+.-++|.+|.. ++||+++| | +.|-.++ .+.|++|.
T Consensus 5 ~~v~l~k~~~g~G~~i~gg~~~~~~~~~~gv~V~~V~~---~spA~~aG~l--------~~GD~I~--~vng~~v~ 67 (94)
T 2fe5_A 5 MEVNLLKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIE---GGAAQKDGRL--------QIGDRLL--AVNNTNLQ 67 (94)
T ss_dssp EEEEEECCTTCSCEEEEECBTSCSBTTBCCEEEEEECT---TSHHHHHCCC--------CTTCEEE--EETTEECT
T ss_pred EEEEEEECCCCCCEEEEcccCCCCCCCCCCEEEEEECC---CChHHHcCCC--------CCCCEEE--EECCEECC
Confidence 3455556677899999842 234589999996 68999999 7 3455433 57777663
No 39
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=86.46 E-value=0.5 Score=37.62 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=48.0
Q ss_pred EeeecCCCcceeeeeee--------cccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceee
Q 011319 301 EIKLKEGDSKLGFAISR--------TEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIV 371 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsR--------TEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmV 371 (488)
++.++.+..-|||.|.. ..+.-+||.+|.. +.||.++| |+ .|-.++ .|.|++|.-
T Consensus 12 ~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v~~--- 75 (107)
T 1wf8_A 12 PVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTE---GGAAQRDGRIQ--------VNDQIV--EVDGISLVG--- 75 (107)
T ss_dssp EEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECT---TCHHHHHCSSC--------TTCBEE--EETTEECBS---
T ss_pred EEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCC---CCHHHHcCCCC--------CCCEEE--EECCEECCC---
Confidence 34444456689999987 1345699999996 79999999 74 344433 566665531
Q ss_pred ecCCceeccCcccccccccccccccCceEEEEEE
Q 011319 372 SSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFL 405 (488)
Q Consensus 372 sSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm~ 405 (488)
+++ .+...+.+....+|.|.|.-
T Consensus 76 --------~~~---~~~~~~~~~~~~~v~l~v~R 98 (107)
T 1wf8_A 76 --------VTQ---NFAATVLRNTKGNVRFVIGR 98 (107)
T ss_dssp --------CCH---HHHHHHHHHCCSEEEEEEEE
T ss_pred --------CCH---HHHHHHHhcCCCeEEEEEEe
Confidence 112 22222333456778877754
No 40
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=86.25 E-value=0.43 Score=36.95 Aligned_cols=55 Identities=22% Similarity=0.426 Sum_probs=38.0
Q ss_pred eEeeecCCCcceeeeeeec-----ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 300 IEIKLKEGDSKLGFAISRT-----EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRT-----EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.++.+..++..|||.|.-- .++-++|.+|.. ++||.++| |+ .|-.++ .+.|++|-
T Consensus 7 ~~v~l~k~~~~lG~~i~~g~~~~~~~~g~~V~~V~~---~spA~~aG~l~--------~GD~I~--~vng~~v~ 67 (96)
T 1d5g_A 7 FEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIP---QGAAESDGRIH--------KGDRVL--AVNGVSLE 67 (96)
T ss_dssp EEEEEECSSSSCCEEEECCSSSCSSSSCCEEEEECT---TSHHHHTTCCC--------TTCEEE--EETTEECT
T ss_pred EEEEEEeCCCCCCEEEECCCCCCCCcCCEEEEEeCC---CChHHHcCCCC--------CCCEEE--EECCEECC
Confidence 3455555678999999842 134689999996 78999999 73 454433 56776664
No 41
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=86.14 E-value=0.54 Score=38.64 Aligned_cols=53 Identities=34% Similarity=0.564 Sum_probs=36.4
Q ss_pred EeeecCCCcceeeeeeec-------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 301 EIKLKEGDSKLGFAISRT-------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRT-------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
++.++.+...|||.|..- .++-++|.+|.. +.||.|+| |+ .|-.++ .|.|++|
T Consensus 27 ~v~l~k~~~glG~~i~gg~~~~~~~~~~gv~V~~V~~---gspA~~aG~L~--------~GD~Il--~Vng~~v 87 (117)
T 2byg_A 27 EIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIID---GGAAQKDGRLQ--------VGDRLL--MVNNYSL 87 (117)
T ss_dssp EEEEECBTTBSSEEEEECTTSCSBTTBCCEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred EEEEEeCCCCcCEEEEcccCCCCccCCCCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEEC
Confidence 444445568999999842 244589999996 79999999 73 454443 4666655
No 42
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=85.90 E-value=0.38 Score=42.72 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=30.7
Q ss_pred eEeeecCCCcceeeeeee--------cccceEEEEEeecCCCCCccchhh-HH
Q 011319 300 IEIKLKEGDSKLGFAISR--------TEEGFIYISTVIDDDENIPSTRSG-LS 343 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsR--------TEEGFiyVsSV~~~~~g~~a~RsG-L~ 343 (488)
+++.++-+...|||.|.. ...+-|||++|.. +.||+|+| |+
T Consensus 82 ~~v~l~k~~~glG~~i~g~~~g~~~~~~~~gi~V~~V~~---gspA~~aG~L~ 131 (170)
T 3egg_C 82 FPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTE---GGAAHRDGRIQ 131 (170)
T ss_dssp EEEEEECBTTBSSEEEEEECSSSSCCSSSBEEEEEEECT---TSHHHHHCCCC
T ss_pred EEEEEEeCCCeEeEEEEecccCCccccCCCCEEEEEECC---CChHHHCCCCC
Confidence 345555555789999987 1346799999996 79999999 63
No 43
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.75 E-value=0.51 Score=37.16 Aligned_cols=56 Identities=14% Similarity=0.388 Sum_probs=39.6
Q ss_pred eeEeeecCCCcceeeeeeecc----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 299 AIEIKLKEGDSKLGFAISRTE----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTE----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.+++.++-+...|||.|.... ++-++|.+|.. +.||.++| |+ .|-.++ .|.|++|.
T Consensus 12 ~~~v~l~~~~~g~G~~l~~~~~~~~~~~v~V~~V~~---~spA~~aG~l~--------~GD~I~--~vng~~v~ 72 (104)
T 2djt_A 12 HFSVELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLK---DGPAQRCGRLE--------VGDLVL--HINGESTQ 72 (104)
T ss_dssp CEEEEEECCSSSCCEEEECCEETTEECCCEEEEECT---TCHHHHHCSCC--------TTCBEE--EETTEECT
T ss_pred eEEEEEEeCCCCccEEEEeccCCCCCCCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEECC
Confidence 445556666678999998632 45689999986 79999999 73 455443 57777653
No 44
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=85.52 E-value=0.6 Score=36.10 Aligned_cols=52 Identities=23% Similarity=0.425 Sum_probs=37.4
Q ss_pred eeecCCCcceeeeeeec--------ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 302 IKLKEGDSKLGFAISRT--------EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRT--------EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+.++.+...|||.|... +++-++|.+|.. ++||.++||+ .|-.++ .+.|++|
T Consensus 7 v~~~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v 66 (97)
T 2w4f_A 7 LTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSE---EGPAARAGVR--------VGDKLL--EVNGVAL 66 (97)
T ss_dssp EEEECBTTBSSEEEEECTTSCCSBTTBCSEEEEEECT---TSHHHHHTCC--------TTCEEE--EETTEEC
T ss_pred EEEEeCCCceeEEEECCccCCcccCCCCCEEEEEECC---CChHHHcCCC--------CCCEEE--EECCEEC
Confidence 44444577899999752 356799999996 7999999984 455443 6777765
No 45
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=85.47 E-value=0.61 Score=36.95 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=33.5
Q ss_pred Ccceeeeeee---------cccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 308 DSKLGFAISR---------TEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 308 dtRlGfaIsR---------TEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
...|||.|.. ..+..++|..|.. +.||.++||+ .|-.++ .+.|++|.
T Consensus 26 ~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~---~spA~~aGl~--------~GD~I~--~vng~~v~ 81 (104)
T 2z17_A 26 NETFGFEIQSYRPQNQNACSSEMFTLICKIQE---DSPAHCAGLQ--------AGDVLA--NINGVSTE 81 (104)
T ss_dssp TSCCSEEEEECCCCCCSSSCCSCCEEEEEECT---TSHHHHHTCC--------TTCBCC--EETTEECT
T ss_pred CCCccEEEEeeecccCCcccCCCCeEEEEECC---CChHHHcCCC--------CCCEEE--EECCEEcC
Confidence 3579999986 2356899999996 7999999983 444333 55666553
No 46
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=85.42 E-value=0.56 Score=37.61 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=29.3
Q ss_pred EeeecCCCcceeeeeeec------ccceEEEEEeecCCCCCccchhh-H
Q 011319 301 EIKLKEGDSKLGFAISRT------EEGFIYISTVIDDDENIPSTRSG-L 342 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRT------EEGFiyVsSV~~~~~g~~a~RsG-L 342 (488)
++.++-+..-|||.|..- .+.-+||.+|.. +.||.++| |
T Consensus 18 ~v~l~k~~~glG~~i~~~~~~~~~~~~g~~V~~v~~---~spA~~aG~L 63 (108)
T 2d92_A 18 IVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVA---DGVAERSGGL 63 (108)
T ss_dssp EEEEEECSSCCSEEEEEEECSSCTTCEEEEEEEECT---TCHHHHHTCC
T ss_pred EEEEEECCCccCEEEecccccCCCCCCCEEEEEECC---CCHHHHCCCC
Confidence 344444456899999752 246699999996 79999999 7
No 47
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=85.38 E-value=0.61 Score=38.75 Aligned_cols=65 Identities=20% Similarity=0.371 Sum_probs=41.2
Q ss_pred EeeeccccceeeeEeeecCCCcceeeeeeecc-----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEee
Q 011319 288 RLWYAPVGGELAIEIKLKEGDSKLGFAISRTE-----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRV 361 (488)
Q Consensus 288 RLWy~P~~~E~~lEi~~~~gdtRlGfaIsRTE-----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv 361 (488)
.+|+.| ..+-.++|. +.....|||.|..-. +.-+||++|.. +.||+|+| | +.|-.++ .+
T Consensus 17 ~~~~~~-~~~~~v~l~-k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~---gspA~~aG~L--------~~GD~Il--~V 81 (118)
T 3b76_A 17 NLYFQS-MHEKVVNIQ-KDPGESLGMTVAGGASHREWDLPIYVISVEP---GGVISRDGRI--------KTGDILL--NV 81 (118)
T ss_dssp -CCCEE-EEEEEEEEE-CCTTCCCCEEEEECSCSTTCCCCEEEEEECT---TSHHHHHCSS--------CTTCEEE--EE
T ss_pred ccccCC-CCcEEEEEE-eCCCCccCEEEecCCCCCCCCCCEEEEEECC---CCHHHHCCCC--------CCCCEEE--EE
Confidence 344444 345556665 333578999998542 22389999996 79999999 7 3454443 46
Q ss_pred cCeeec
Q 011319 362 SNQKVL 367 (488)
Q Consensus 362 ~g~kVl 367 (488)
.|+.|.
T Consensus 82 Ng~~v~ 87 (118)
T 3b76_A 82 DGVELT 87 (118)
T ss_dssp TTEEGG
T ss_pred CCEECC
Confidence 666554
No 48
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=85.29 E-value=0.61 Score=35.80 Aligned_cols=54 Identities=31% Similarity=0.448 Sum_probs=39.6
Q ss_pred EeeecCCCcceeeeeeeccc-ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEGDSKLGFAISRTEE-GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTEE-GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.+.++.+...|||.|....+ .-++|.+|.. ++||.++|| +.|-.++ .+.|++|.
T Consensus 7 ~v~l~k~~~g~G~~~~~~~~~~gv~V~~V~~---~spA~~aGl--------~~GD~I~--~ing~~v~ 61 (90)
T 2he4_A 7 LCHLRKGPQGYGFNLHSDKSRPGQYIRSVDP---GSPAARSGL--------RAQDRLI--EVNGQNVE 61 (90)
T ss_dssp EEEEECBTTBCCEEEEECSSSSSEEEEEECT---TSHHHHHTC--------CTTCEEE--EETTEECT
T ss_pred EEEEEECCCCccEEEEccCCCCCEEEEEECC---CChHHHCCC--------CCCCEEE--EECCEECC
Confidence 45566666789999986653 4689999996 799999998 3555443 67777663
No 49
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=85.09 E-value=0.66 Score=36.93 Aligned_cols=59 Identities=20% Similarity=0.439 Sum_probs=42.4
Q ss_pred cceeeeEeeecCCCcceeeeeeec----------ccceEEEEEeecCCCCCccchh-hHHHHHHHHHhcCcEEEEEeecC
Q 011319 295 GGELAIEIKLKEGDSKLGFAISRT----------EEGFIYISTVIDDDENIPSTRS-GLSILYKEAVSASKLLVVSRVSN 363 (488)
Q Consensus 295 ~~E~~lEi~~~~gdtRlGfaIsRT----------EEGFiyVsSV~~~~~g~~a~Rs-GL~~Ly~~A~~a~kLLVISRv~g 363 (488)
...-+.++.++.+...|||.|.-- .+.-+||++|.. +.||+++ || +.|-.++ .|.|
T Consensus 5 ~~~~~~~v~l~k~~~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~---~spA~~aggL--------~~GD~Il--~vng 71 (107)
T 1uhp_A 5 SSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVD---SGPAAKEGGL--------QIHDRII--EVNG 71 (107)
T ss_dssp CSSEEEEEEECCSSSCCSEEEECCCSCCCCTTSSCSCCCEEEEECS---SSHHHHTTCC--------CSSCEEE--EETT
T ss_pred cCcEEEEEEEEeCCCccCEEEEcCCCCcccccccCCCCEEEEEeCC---CChHHHcCCC--------CCCCEEE--EECC
Confidence 334466777887789999999742 244589999996 7999999 87 4455443 5777
Q ss_pred eee
Q 011319 364 QKV 366 (488)
Q Consensus 364 ~kV 366 (488)
++|
T Consensus 72 ~~v 74 (107)
T 1uhp_A 72 RDL 74 (107)
T ss_dssp EEC
T ss_pred EEC
Confidence 765
No 50
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=85.08 E-value=0.48 Score=37.70 Aligned_cols=54 Identities=22% Similarity=0.438 Sum_probs=36.8
Q ss_pred eEeeecCCCcceeeeeee-c---------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 300 IEIKLKEGDSKLGFAISR-T---------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsR-T---------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.++.++-++..|||.|.. | .++-+||++|.. ++||+++| |+ .|-.++ .+.|++|
T Consensus 11 ~~v~l~k~~~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v 75 (108)
T 1q7x_A 11 FEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIP---QGAAESDGRIH--------KGDRVL--AVNGVSL 75 (108)
T ss_dssp EEEEEESSSCSCCEEESSSSSSBCBCTTSSSCCCBEEEECT---TSTHHHHTCCC--------SSCEEE--EETTEEC
T ss_pred EEEEEEECCCCccEEEEEeccCCCccccCCCCCEEEEEECC---CChHHHCCCCC--------CCCEEE--EECCEEC
Confidence 344444556889999982 1 234689999996 79999999 73 454443 5677655
No 51
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=84.93 E-value=0.68 Score=36.25 Aligned_cols=54 Identities=31% Similarity=0.481 Sum_probs=37.3
Q ss_pred EeeecCCCcceeeeeeecc-------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEGDSKLGFAISRTE-------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTE-------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++.++-+...|||.|.... +.=++|.+|.. ++||.++| | +.|-.++ .+.|++|-
T Consensus 10 ~v~l~~~~~~lG~~l~~g~~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~I~--~vng~~v~ 71 (101)
T 2jik_A 10 EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKE---NGAAALDGRL--------QEGDKIL--SVNGQDLK 71 (101)
T ss_dssp EEEEECCTTCCCEEEEECTTSCSBTTBCCEEEEEECT---TSHHHHHCCC--------CTTCEEE--EETTEECS
T ss_pred EEEEEeCCCCCCEEEeccccCCCccCCCCEEEEEECC---CCHHHHCCCC--------CCCCEEE--EECCEECC
Confidence 3444455689999998732 34589999986 78999999 7 3455433 56777654
No 52
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=84.71 E-value=0.73 Score=35.11 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=37.4
Q ss_pred eEeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecc
Q 011319 300 IEIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLP 368 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlP 368 (488)
+++.+ .++..|||.|..-. +.-++|.+|.. ++||.++||+ .|-.++ .+.|++|--
T Consensus 5 ~~v~l-~~~~~~G~~l~~g~~~~~~~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v~~ 61 (88)
T 2uzc_A 5 YSVSL-VGPAPWGFRLQGGKDFNMPLTISSLKD---GGKAAQANVR--------IGDVVL--SIDGINAQG 61 (88)
T ss_dssp EEEEE-ESSSCCCEEEEEEGGGTEEEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEECTT
T ss_pred EEEEE-cCCCcccEEEECcCCCCCCeEEEEECC---CChHHHcCCC--------CCCEEE--EECCEECCC
Confidence 34444 35678999997522 33589999996 7999999984 455443 677776643
No 53
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=84.62 E-value=0.66 Score=38.23 Aligned_cols=53 Identities=28% Similarity=0.456 Sum_probs=37.0
Q ss_pred EeeecCCCcceeeeeeecc-----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 301 EIKLKEGDSKLGFAISRTE-----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTE-----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
++.++-+...|||.|.... +.-++|++|.. ++||+++| |+ .|-.++ .|.|++|
T Consensus 28 ~v~L~k~~~glGf~l~~g~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~Il--~Vng~~v 86 (117)
T 2fne_A 28 SITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFA---KGAASEDGRLK--------RGDQII--AVNGQSL 86 (117)
T ss_dssp EEEECCBTTBTSEEEEEEEEETTEEEEEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred EEEEEeCCCcccEEEecccCCCCCCCCEEEEEECC---CChHHHcCCCC--------CCCEEE--EECCEEC
Confidence 4555556678999998642 34589999996 79999999 73 454443 4666655
No 54
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=84.50 E-value=3.3 Score=33.47 Aligned_cols=70 Identities=23% Similarity=0.281 Sum_probs=44.5
Q ss_pred eeecCCCcceeeeeeecc---cceEEEEEeecCCCCCccchhh-HH-------------------HHHHHHHhcC---cE
Q 011319 302 IKLKEGDSKLGFAISRTE---EGFIYISTVIDDDENIPSTRSG-LS-------------------ILYKEAVSAS---KL 355 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRTE---EGFiyVsSV~~~~~g~~a~RsG-L~-------------------~Ly~~A~~a~---kL 355 (488)
+..+.+...|||.|.-.. ..-++|.+|.. +.||+++| |+ ++.+..+.++ .+
T Consensus 20 ~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~---~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~ 96 (119)
T 1x6d_A 20 ILHKEEGAGLGFSLAGGADLENKVITVHRVFP---NGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQA 96 (119)
T ss_dssp EEECCTTSCCSEEEECCSSSSCSSCEEEEECS---SSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEE
T ss_pred EEEeCCCCccCEEEeCCCCCCCCCEEEEEECC---CChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEE
Confidence 334555788999997543 24589999996 79999999 52 2333222222 35
Q ss_pred EEEEeecCeeecceeeecC
Q 011319 356 LVVSRVSNQKVLPWIVSST 374 (488)
Q Consensus 356 LVISRv~g~kVlPwmVsSs 374 (488)
|+|-|=+.++.+.-+-+++
T Consensus 97 l~v~R~~~~~~~~~~~s~~ 115 (119)
T 1x6d_A 97 VIVTRKLTPEAMPDLNSSG 115 (119)
T ss_dssp EEEEECCCSSSCCCCCCSC
T ss_pred EEEEcCCCccchhhccCCC
Confidence 6777766666666555544
No 55
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=84.50 E-value=0.65 Score=36.82 Aligned_cols=55 Identities=29% Similarity=0.364 Sum_probs=37.9
Q ss_pred eEeeecCCCcceeeeeeec--ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 300 IEIKLKEGDSKLGFAISRT--EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRT--EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.++.++-+...|||.|..- ...-+||.+|.. +.||+++| | +.|-.++ .+.|++|.
T Consensus 11 ~~v~l~~~~~g~G~~i~~g~~~~~~~~V~~V~~---~spA~~aG~L--------~~GD~Il--~ing~~v~ 68 (103)
T 1uep_A 11 LDVHLRRMESGFGFRILGGDEPGQPILIGAVIA---MGSADRDGRL--------HPGDELV--YVDGIPVA 68 (103)
T ss_dssp ECCEEESSSSSCCEEECCCCSTTSCCBEEEECT---TSTTGGGTCC--------CTTCEEE--EETTEECT
T ss_pred EEEEEEeCCCccCEEEeeecCCCCCeEEEEeCC---CChHHhCCCC--------CCCCEEE--EECCEECC
Confidence 3445555677899999762 234589999996 79999999 7 3455444 56776553
No 56
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=84.50 E-value=0.72 Score=35.89 Aligned_cols=38 Identities=13% Similarity=0.330 Sum_probs=28.5
Q ss_pred eeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HH
Q 011319 299 AIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LS 343 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~ 343 (488)
-+.+.....+..+||.+. |-+||++|.. +.||+++| |+
T Consensus 3 ~v~l~~~~~~~~~G~~~~----~gv~V~~V~~---gspA~~aG~L~ 41 (88)
T 3e17_A 3 GVLLMKSRANEEYGLRLG----SQIFVKEMTR---TGLATKDGNLH 41 (88)
T ss_dssp EEEEECBTTBCCCCEEEE----EEEEEEEECT---TSHHHHHCCCC
T ss_pred EEEEEeCCCCCCCCEEEe----CCEEEEEECC---CCHHHHcCCCC
Confidence 344555555668999884 3699999996 79999999 74
No 57
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=84.36 E-value=0.72 Score=37.25 Aligned_cols=54 Identities=26% Similarity=0.427 Sum_probs=39.0
Q ss_pred EeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.|.++.....|||.+....++-++|..|.. ++||.++||+ .|-.++ .+.|++|-
T Consensus 22 ~v~l~~~~~~lG~~~~~~~~~gv~V~~V~~---~spA~~aGL~--------~GD~Il--~vng~~v~ 75 (117)
T 1uit_A 22 HVKVQKGSEPLGISIVSGEKGGIYVSKVTV---GSIAHQAGLE--------YGDQLL--EFNGINLR 75 (117)
T ss_dssp EEEEECSSCCCCEEEEECTTSCEEEEEECT---TSHHHHHTCC--------TTCEEC--EETTEETT
T ss_pred EEEEEeCCCCccEEEEccCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 344445567899999887666799999996 7999999974 455443 66776653
No 58
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=84.17 E-value=0.68 Score=36.34 Aligned_cols=53 Identities=32% Similarity=0.544 Sum_probs=37.3
Q ss_pred EeeecCCCcceeeeeeec-------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 301 EIKLKEGDSKLGFAISRT-------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRT-------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
++.++-+..-|||.|... .+.=++|.+|.. ++||.++| |+ .|-.++ .+.|+.|
T Consensus 7 ~v~l~k~~~glG~~i~~g~~~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v 67 (102)
T 2i1n_A 7 EIVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIP---GGAAAMDGRLG--------VNDCVL--RVNEVDV 67 (102)
T ss_dssp EEEEECBTTBTSEEEEECTTSCSSTTCCCEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred EEEEEECCCcCCEEEEcccCCCCcCCCCCEEEEEECC---CCHHHHCCCCC--------CCCEEE--EECCEEC
Confidence 455555677899999863 234689999996 79999999 73 454433 5666655
No 59
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=84.09 E-value=0.89 Score=34.81 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=36.6
Q ss_pred EeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++.++ +...|||.|..-. +.-++|.+|.. ++||.++||+ .|-.++ .+.|++|-
T Consensus 6 ~v~~~-~~~~~G~~l~gg~~~~~~v~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v~ 60 (89)
T 2q3g_A 6 KVVLE-GPAPWGFRLQGGKDFNVPLSISRLTP---GGKAAQAGVA--------VGDWVL--SIDGENAG 60 (89)
T ss_dssp EEEEE-SSSCCCEEEEEEGGGTEEEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEEGG
T ss_pred EEEEc-CCCcccEEEECcCCCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 33343 5688999996522 23488999985 7999999984 555544 67777664
No 60
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=84.04 E-value=0.9 Score=37.28 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=49.6
Q ss_pred Eeee-cCCCcceeeeeeec-------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceee
Q 011319 301 EIKL-KEGDSKLGFAISRT-------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIV 371 (488)
Q Consensus 301 Ei~~-~~gdtRlGfaIsRT-------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmV 371 (488)
++.+ +.+...|||.|... +++-+||.+|.. ++||.++| | +.|-.++ .+.|++|.
T Consensus 18 ~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~I~--~vng~~v~---- 80 (129)
T 2dmz_A 18 NVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIP---GSAAYHNGHI--------QVNDKIV--AVDGVNIQ---- 80 (129)
T ss_dssp EEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECT---TSHHHHHTCC--------CSSCBEE--EETTBCCT----
T ss_pred EEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCC---CCHHHHcCCC--------CCCCEEE--EECCEECC----
Confidence 4444 33577899999763 346799999996 79999999 7 3454443 56666552
Q ss_pred ecCCceeccCcccccccccccccccCceEEEEEEe
Q 011319 372 SSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLW 406 (488)
Q Consensus 372 sSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm~W 406 (488)
.+.+..+.+.|. ....+|.|.|+--
T Consensus 81 -------~~~~~~~~~~l~---~~~~~v~l~v~R~ 105 (129)
T 2dmz_A 81 -------GFANHDVVEVLR---NAGQVVHLTLVRR 105 (129)
T ss_dssp -------TCCHHHHHHHHH---HCCSSEEEEEEEE
T ss_pred -------CCCHHHHHHHHH---cCCCeEEEEEEeC
Confidence 222233333332 3677888877643
No 61
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=83.91 E-value=1.2 Score=38.58 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=45.9
Q ss_pred cceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceeccCcccccc
Q 011319 309 SKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQ 387 (488)
Q Consensus 309 tRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~Dt~slsq 387 (488)
..|||.+.+.+.| +||.+|.. +.||.++| | +.|-.++ .|.|++|-- +++..+.+
T Consensus 125 ~~lG~~~~~~~~g-v~V~~V~~---gs~A~~aG~L--------~~GD~Il--~VNg~~v~~-----------~~~~~~~~ 179 (206)
T 3r0h_A 125 KELGLSLSPNEIG-CTIADLIQ---GQYPEIDSKL--------QRGDIIT--KFNGDALEG-----------LPFQVCYA 179 (206)
T ss_dssp CCCCEEEEECSSC-EEEEEECT---TSCHHHHHHC--------CTTCEEE--EETTEECTT-----------CCHHHHHH
T ss_pred CccCeEEEcCCce-EEEEEECC---CChHHHcCCC--------CCCCEEE--EECCEECCC-----------CCHHHHHH
Confidence 5799999988777 78999995 79999999 6 4555443 467766542 22223333
Q ss_pred cccccccccCceEEEEEEe
Q 011319 388 KLSLHRHAKVPILLHVFLW 406 (488)
Q Consensus 388 kLslhr~a~~pI~lHvm~W 406 (488)
.| +....++.|.|.-.
T Consensus 180 ~l---~~~~~~v~L~V~R~ 195 (206)
T 3r0h_A 180 LF---KGANGKVSMEVTRP 195 (206)
T ss_dssp HH---HTCCSEEEEEEEEE
T ss_pred HH---HcCCCeEEEEEEeC
Confidence 33 34556777766543
No 62
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=83.74 E-value=0.59 Score=37.69 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=30.1
Q ss_pred EeeecCCCcceeeeeeeccc---ceEEEEEeecCCCCCccchhh-HH
Q 011319 301 EIKLKEGDSKLGFAISRTEE---GFIYISTVIDDDENIPSTRSG-LS 343 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTEE---GFiyVsSV~~~~~g~~a~RsG-L~ 343 (488)
++.++.+...|||.|.-..+ ..++|++|.. +.||+++| |+
T Consensus 9 ~v~l~k~~~glG~~i~gg~~~~~~~~~I~~v~~---~s~A~~aG~L~ 52 (103)
T 1ufx_A 9 LVRVKKSAATLGIAIEGGANTRQPLPRIVTIQR---GGSAHNCGQLK 52 (103)
T ss_dssp EEEEECCSSSCCEEEECBTTSSCSSCEEEEECT---TSHHHHHCSSC
T ss_pred EEEEEcCCCcCCeEEECCCCCCCCcEEEEEeCC---CChHHHCCCCC
Confidence 34445667889999986544 3469999996 79999999 73
No 63
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=83.68 E-value=0.94 Score=35.37 Aligned_cols=77 Identities=18% Similarity=0.346 Sum_probs=47.3
Q ss_pred EeeecCCC-cceeeeeee-------cc--cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeeccee
Q 011319 301 EIKLKEGD-SKLGFAISR-------TE--EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWI 370 (488)
Q Consensus 301 Ei~~~~gd-tRlGfaIsR-------TE--EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwm 370 (488)
+++++.++ ..|||.|.. .. +..++|.+|.. ++||+++||+ .|-.++ .+.|++|--
T Consensus 7 ~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v~~-- 71 (96)
T 2ego_A 7 VLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHE---SSPAQLAGLT--------PGDTIA--SVNGLNVEG-- 71 (96)
T ss_dssp EEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECT---TCHHHHTTCC--------TTCEEE--EETTEECTT--
T ss_pred EEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECC---CChHHHcCCC--------CCCEEE--EECCEECCC--
Confidence 44444444 589999975 11 24689999986 7999999984 455443 677776542
Q ss_pred eecCCceeccCcccccccccccccccCceEEEEE
Q 011319 371 VSSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVF 404 (488)
Q Consensus 371 VsSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm 404 (488)
+++..+.+.|..+ ..+|.|.|+
T Consensus 72 ---------~~~~~~~~~l~~~---~~~v~l~v~ 93 (96)
T 2ego_A 72 ---------IRHREIVDIIKAS---GNVLRLETL 93 (96)
T ss_dssp ---------CCHHHHHHHHHHT---TTEEEEEEE
T ss_pred ---------CCHHHHHHHHHhC---CCeEEEEEE
Confidence 2234454555443 346666553
No 64
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=83.58 E-value=0.78 Score=36.34 Aligned_cols=48 Identities=21% Similarity=0.390 Sum_probs=33.9
Q ss_pred CCCcceeeeeee-----cccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 306 EGDSKLGFAISR-----TEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 306 ~gdtRlGfaIsR-----TEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.+...|||.|.- ..+.=+||.+|.. ++||+++| | +.|-.++ .+.|++|
T Consensus 18 ~~~~glG~~i~~~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~I~--~ing~~v 71 (106)
T 3axa_A 18 KKQNGMGLSIVAAKGAGQDKLGIYVKSVVK---GGAADVDGRL--------AAGDQLL--SVDGRSL 71 (106)
T ss_dssp ECSSSCSEEEEEEECSSCSSEEEEEEEEBT---TSHHHHHCCC--------CTTCEEE--EETTEEC
T ss_pred CCCCccCEEEEeecCCCCCCCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEEC
Confidence 356789999964 1334589999996 79999999 7 3454443 5677655
No 65
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=83.38 E-value=0.77 Score=35.56 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=26.4
Q ss_pred CCcceeeeeeecc-cceEEEEEeecCCCCCccchhh-H
Q 011319 307 GDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSG-L 342 (488)
Q Consensus 307 gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsG-L 342 (488)
+...|||.|...+ .+-++|++|.. +.||+++| |
T Consensus 13 ~~~~lG~~i~~~~~~~~~~V~~v~~---gspA~~aG~L 47 (93)
T 3o46_A 13 NREPLGATIKKDEQTGAIIVARIMR---GGAADRSGLI 47 (93)
T ss_dssp SSSCCCEEEEECTTTCCEEEEEECT---TSHHHHHTCC
T ss_pred CCCCccEEEEecCCCCCEEEEEECC---CCHHHHcCCC
Confidence 3458999998753 35689999996 79999999 6
No 66
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=83.18 E-value=0.59 Score=35.99 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=37.1
Q ss_pred EeeecCCCcceeeeeeeccc-ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEGDSKLGFAISRTEE-GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTEE-GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.+.++.+...|||.+....+ .-++|.+|.. ++||+++|| +.|-.+ =.+.|+.|.
T Consensus 8 ~v~l~~~~~~~G~~l~~~~~~~~~~V~~v~~---~spA~~aGl--------~~GD~I--~~ing~~v~ 62 (95)
T 3r68_A 8 VVVIKKGSNGYGFYLRAGPEQKGQIIKDIEP---GSPAEAAGL--------KNNDLV--VAVNGKSVE 62 (95)
T ss_dssp EEEEECBTTBCSCEEEEC--CCSEEEECCCT---TSHHHHHTC--------CTTEEE--EEETTEECT
T ss_pred EEEEecCCCcccEEEEecCCCCCEEEEEECC---CCHHHHCCC--------CCCCEE--EEECCEECC
Confidence 35555567789999976544 2688999985 799999998 345443 346777654
No 67
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=83.07 E-value=1.3 Score=37.14 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=25.8
Q ss_pred CCcceeeeeee---cc--cceEEEEEeecCCCCCccchhh-H
Q 011319 307 GDSKLGFAISR---TE--EGFIYISTVIDDDENIPSTRSG-L 342 (488)
Q Consensus 307 gdtRlGfaIsR---TE--EGFiyVsSV~~~~~g~~a~RsG-L 342 (488)
....|||.|.. .+ +..+||.+|.. +.||+++| |
T Consensus 46 ~~~~lG~~i~gg~~~~~~~~gv~V~~V~~---gspA~~aG~L 84 (131)
T 1wfg_A 46 SGAMLGLKVVGGKMTESGRLCAFITKVKK---GSLADTVGHL 84 (131)
T ss_dssp SCTTTTEEEEEEEECSSSCEEEEEEEECT---TSHHHHTSCC
T ss_pred CCCCCCEEEecCccCCCCCCCEEEEEECC---CChHHHcCCC
Confidence 46689999954 22 23799999996 79999999 7
No 68
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=82.96 E-value=0.66 Score=38.67 Aligned_cols=51 Identities=18% Similarity=0.413 Sum_probs=37.0
Q ss_pred CCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecce
Q 011319 306 EGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPW 369 (488)
Q Consensus 306 ~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPw 369 (488)
.....|||.+....++=++|.+|.. ++||.++|| +.|-.++ .|.|++|--|
T Consensus 36 ~~~~~lG~~l~~~~~~gv~V~~V~~---gspA~~aGL--------~~GD~Il--~Vng~~v~~~ 86 (124)
T 3tsv_A 36 RKGDSVGLRLAGGNDVGIFVAGVLE---DSPAAKEGL--------EEGDQIL--RVNNVDFTNI 86 (124)
T ss_dssp ECSSCCCEEEEECTTSCEEEEEECT---TCHHHHTTC--------CTTEEEE--EETTEECSSC
T ss_pred CCCCceeEEEecCCCCCEEEEEECC---CCHHHHcCC--------CCCCEEE--EECCEECCCC
Confidence 3346899999874455589999996 799999998 3455443 6778776543
No 69
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=82.93 E-value=0.5 Score=36.77 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=54.2
Q ss_pred cceeeeEeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeee
Q 011319 295 GGELAIEIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVS 372 (488)
Q Consensus 295 ~~E~~lEi~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVs 372 (488)
.|++.+.+..+ +...|||.|..-. +.-++|.+|.. ++||.++|| +.|-.++ .+.|++|--
T Consensus 3 sg~~~~~~~~~-~~~~lG~~l~~g~~~~~g~~V~~V~~---~spA~~aGL--------~~GD~I~--~ing~~v~~---- 64 (94)
T 1vb7_A 3 SGSSGLTVDVA-GPAPWGFRISGGRDFHTPIIVTKVTE---RGKAEAADL--------RPGDIIV--AINGQSAEN---- 64 (94)
T ss_dssp CCCCCEEEEEC-SSSCCSBCCEEETTTTEEEECCCBCT---TSSHHHHTC--------CTTCEEE--EETTEECTT----
T ss_pred CccEEEEEEec-CCCCccEEEecccCCCCCeEEEEECC---CCHHHHCCC--------CCCCEEE--EECCEECCC----
Confidence 47788888887 4679999997522 23478999985 799999998 4465544 788887643
Q ss_pred cCCceeccCcccccccccccccccCceEEEEE
Q 011319 373 STGAVRCFDTVSLSQKLSLHRHAKVPILLHVF 404 (488)
Q Consensus 373 SsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm 404 (488)
+.+..+.+.|..+ ..+|.|.|.
T Consensus 65 -------~~~~~~~~~l~~~---~~~v~l~v~ 86 (94)
T 1vb7_A 65 -------MLHAEAQSKIRQS---ASPLRLQLD 86 (94)
T ss_dssp -------CCHHHHHHHHHTC---CSSEEEEEE
T ss_pred -------CCHHHHHHHHHhC---CCcEEEEEE
Confidence 2223344444333 267777664
No 70
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=82.81 E-value=1.5 Score=34.68 Aligned_cols=54 Identities=20% Similarity=0.390 Sum_probs=36.1
Q ss_pred eeEeeecCCCcceeeeeeecccc----eEEEEEeecCCCCCccch-hhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 299 AIEIKLKEGDSKLGFAISRTEEG----FIYISTVIDDDENIPSTR-SGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTEEG----FiyVsSV~~~~~g~~a~R-sGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.++|....| ..|||.|.-...| -++|.+|.. ++||++ +||+ .|-.++ .+.|++|
T Consensus 12 ~v~l~k~~g-~~lG~~i~~~~~~~~~~~~~V~~V~~---~spA~~~ggl~--------~GD~I~--~Ing~~v 70 (101)
T 2yt7_A 12 EVHLEKRRG-EGLGVALVESGWGSLLPTAVIANLLH---GGPAERSGALS--------IGDRLT--AINGTSL 70 (101)
T ss_dssp EEEEECCTT-CCCCEEEEECCCSSSSCCEEEEEECT---TSTTGGGSSCC--------TTCEEE--EESSCBC
T ss_pred EEEEEeCCC-CccCEEEEeCCCCCCccCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEEC
Confidence 345555555 4799999754444 589999996 799999 4573 444433 4667665
No 71
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=82.76 E-value=0.94 Score=36.10 Aligned_cols=54 Identities=24% Similarity=0.455 Sum_probs=36.6
Q ss_pred eEeeecCCCcceeeeeeec-----ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 300 IEIKLKEGDSKLGFAISRT-----EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRT-----EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+++.++.+..-|||.|... .+.-++|.+|.. +.||+++| |+ .|-.++ .|.|++|
T Consensus 10 ~~v~l~~~~~glG~~l~~g~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~I~--~vng~~v 69 (110)
T 1um1_A 10 FTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLP---GSPAAADGRLS--------LGDRIL--EVNGSSL 69 (110)
T ss_dssp EEEEEECCTTCCCEEEEETTTSTTCCSSEEEEEECT---TSHHHHHSCCC--------TTCEEE--EESSCBC
T ss_pred EEEEEEECCCccCEEEeCCcCCCCCCCCEEEEEECC---CChHHHcCCCC--------CCCEEE--EECCEEC
Confidence 3444445556899999763 233589999986 79999999 73 455443 5677655
No 72
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=82.61 E-value=0.36 Score=36.54 Aligned_cols=53 Identities=23% Similarity=0.385 Sum_probs=38.0
Q ss_pred eEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 300 IEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
-++.++-+...|||.+.. ..| ++|.+|.. ++||+++||+ .|-.++ .+.|++|.
T Consensus 4 r~v~l~~~~~g~G~~~~~-~~~-~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v~ 56 (83)
T 2kv8_A 4 RSVEVARGRAGYGFTLSG-QAP-CVLSCVMR---GSPADFVGLR--------AGDQIL--AVNEINVK 56 (83)
T ss_dssp EEEEECCCSSCCSCBCCC-SSS-CBCCBCCT---TSTTTTTTCC--------TTCEEE--EETTEECS
T ss_pred EEEEEEeCCCcccEEEEc-CCC-eEEEEeCC---CChHHHcCCC--------CCCEEE--EECCEECC
Confidence 356667777889998865 345 78899885 7899999974 455443 57777664
No 73
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=82.34 E-value=0.8 Score=35.16 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=39.0
Q ss_pred eeeeEeeecCCCcceeeeeeec-ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 297 ELAIEIKLKEGDSKLGFAISRT-EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 297 E~~lEi~~~~gdtRlGfaIsRT-EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.+.++|...+ ...|||.|.-- ++.-++|.+|.. ++||+++| | +.|-.++ .+.|++|
T Consensus 5 ~~~v~l~k~~-~~~lG~~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~I~--~vng~~v 62 (92)
T 2qg1_A 5 TLTIGLQKKP-GKGLGLSIVGKRNDTGVFVSDIVK---GGIADADGRL--------MQGDQIL--MVNGEDV 62 (92)
T ss_dssp EEEEEEECCT-TSCCSEEEECCSSSCSCEEEEECT---TSHHHHHTCC--------CTTCEEE--EETTEEC
T ss_pred EEEEEEEeCC-CCcccEEEEeccCCCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEEC
Confidence 4555555444 46799999754 345689999996 79999999 7 3455544 5777766
No 74
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=82.05 E-value=0.95 Score=36.60 Aligned_cols=62 Identities=16% Similarity=0.369 Sum_probs=38.6
Q ss_pred eccccceeeeEeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 291 YAPVGGELAIEIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 291 y~P~~~E~~lEi~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
|.+......|+| +.+...|||.|.... +.-++|.+|.. ++||.++| | +.|-.++ .|.|++|.
T Consensus 19 ~~~~~~~~~v~l--~~~~~glG~~l~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~Il--~Vng~~v~ 83 (112)
T 2r4h_A 19 YFQSMDFYTVEL--ERGAKGFGFSLRGGREYNMDLYVLRLAE---DGPAERSGKM--------RIGDEIL--EINGETTK 83 (112)
T ss_dssp ----CCEEEEEE--ECBTTBTSEEEEECGGGTCCEEEEEECT---TSHHHHTTCC--------CTTCEEE--EETTEECT
T ss_pred ccCCCceEEEEE--EcCCCccCEEEeccccCCCCEEEEEECC---CChHHHcCCC--------CCCCEEE--EECCEECC
Confidence 444444444444 444567999997543 33579999996 78999999 7 3455443 57777764
No 75
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=81.93 E-value=0.73 Score=35.27 Aligned_cols=54 Identities=15% Similarity=0.350 Sum_probs=36.8
Q ss_pred EeeecCCCcceeeeeeec------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEGDSKLGFAISRT------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRT------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++.++.+...|||.|... .++-++|.+|.. ++||.++| |+ .|-.++ .+.|++|-
T Consensus 7 ~v~l~~~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~---~s~A~~aG~l~--------~GD~I~--~vng~~v~ 67 (97)
T 2iwn_A 7 DVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITK---SSAVEHDGRIQ--------IGDQII--AVDGTNLQ 67 (97)
T ss_dssp EEEEECBTTBSCEEEECCCCC----CCCCEEEEECT---TCHHHHHCCCC--------TTCEEE--EETTEECT
T ss_pred EEEEecCCCCCcEEEEccCCCCCCCCCCEEEEEeCC---CChHHhCCCCC--------CCCEEE--EECCEECC
Confidence 344455567799999876 245688999986 68999999 73 344433 56776653
No 76
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.76 E-value=0.75 Score=35.29 Aligned_cols=53 Identities=34% Similarity=0.452 Sum_probs=36.8
Q ss_pred eeecCCCcceeeeeeec--ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 302 IKLKEGDSKLGFAISRT--EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRT--EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+.++.+...|||.|..- .++-++|.+|.. ++||+++| |+ .|-.++ .+.|++|-
T Consensus 9 v~l~k~~~glG~~l~~~~~~~~~~~V~~V~~---~spA~~aGgl~--------~GD~I~--~vng~~v~ 64 (93)
T 2dkr_A 9 VELPKTDEGLGFNIMGGKEQNSPIYISRVIP---GGVADRHGGLK--------RGDQLL--SVNGVSVE 64 (93)
T ss_dssp EEEECCTTCCCEEEECSSSSSCCCEEEEECT---TSHHHHHCCCC--------TTCBEE--EETTEECT
T ss_pred EEEEeCCCCccEEEecccCCCCCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEECC
Confidence 44445678899999752 245689999996 68999995 74 454433 46777664
No 77
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=81.65 E-value=1.1 Score=36.56 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=31.9
Q ss_pred cceeeeeeecccc-------eEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 309 SKLGFAISRTEEG-------FIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 309 tRlGfaIsRTEEG-------FiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
..|||.|.-..+- -+||++|.. +.||+++| |+ .|-.++ .|.|+.|
T Consensus 30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~---~s~A~~aG~L~--------~GD~Il--~vng~~v 82 (117)
T 1ujd_A 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILP---GGSAEQTGKLM--------EGMQVL--EWNGIPL 82 (117)
T ss_dssp CSCSEEEEEEEECSSSSSCEEEEEEEECT---TCHHHHHSSCC--------TTCEEE--EETTEEC
T ss_pred CcccEEEeCCCCCCcccCCcCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEEc
Confidence 6899999755431 389999996 79999999 73 444333 5566655
No 78
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.25 E-value=1 Score=36.63 Aligned_cols=53 Identities=32% Similarity=0.503 Sum_probs=36.7
Q ss_pred EeeecCCCcceeeeeeecc-------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 301 EIKLKEGDSKLGFAISRTE-------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTE-------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+|.++-+...|||.|.... +.-+||.+|.. +.||+++| | +.|-.++ .|.|++|
T Consensus 20 ~v~l~r~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~Il--~vng~~v 80 (120)
T 2eno_A 20 EINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKE---NGAAALDGRL--------QEGDKIL--SVNGQDL 80 (120)
T ss_dssp EEEEECCSSSCSEEEECCTTTCSSSSCCSEEEEEECS---SSHHHHSCCS--------CTTCEEE--EETTEEC
T ss_pred EEEEEECCCCCCEEEecccCCccccCCCCEEEEEECC---CChHHHCCCC--------CCCCEEE--EECCEEC
Confidence 3444455589999998632 34589999996 79999999 7 3455443 4666655
No 79
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=81.21 E-value=1.1 Score=35.68 Aligned_cols=54 Identities=22% Similarity=0.426 Sum_probs=38.3
Q ss_pred eEeeecCCCcceeeeeeec--------ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 300 IEIKLKEGDSKLGFAISRT--------EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRT--------EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+.+.++.+...|||.|... ++.-++|.+|.. ++||.++|| +.|-.++ .+.|++|
T Consensus 17 ~~~~l~~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~---~spA~~aGL--------~~GD~I~--~ing~~v 78 (110)
T 1x5q_A 17 LTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSE---EGPAARAGV--------RVGDKLL--EVNGVAL 78 (110)
T ss_dssp EEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECT---TSHHHHHTC--------CTTCEEE--EETTEEC
T ss_pred EEEEEecCCCeeeEEEEccccCCccccCCCCEEEEEECC---CCHHHHcCC--------CCCCEEE--EECCEEC
Confidence 4455555678899999732 345689999996 799999998 4455443 6677665
No 80
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=81.12 E-value=1 Score=35.39 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=39.0
Q ss_pred eEeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 300 IEIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
-.+.++.+...|||.|...+ ++-++|.+|.. ++||+++||+ .|-.++ .+.|++|
T Consensus 8 r~v~l~k~~~g~G~~l~~~~~~~g~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v 62 (102)
T 2d90_A 8 RVVVIKKGSNGYGFYLRAGPEQKGQIIKDIEP---GSPAEAAGLK--------NNDLVV--AVNGKSV 62 (102)
T ss_dssp EEEEEECCSSSSSCEEEECSSSSSEEEECCCT---TSTTTTTTCC--------TTCEEE--EESSCBC
T ss_pred EEEEEeeCCCCccEEEEeecCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEEC
Confidence 34566667778999998743 34588999985 7999999984 455443 6677765
No 81
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=81.11 E-value=0.67 Score=36.63 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=37.3
Q ss_pred eeeeEeeecCCCcceeeeeeec-c-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 297 ELAIEIKLKEGDSKLGFAISRT-E-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 297 E~~lEi~~~~gdtRlGfaIsRT-E-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++.|+|. +...|||.|.-- + +.-++|.+|.. ++||.++||+ .|-.++ .+.|++|-
T Consensus 6 ~~~v~l~---~~~~~G~~l~gg~~~~~~v~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v~ 62 (103)
T 1wf7_A 6 SGSVSLV---GPAPWGFRLQGGKDFNMPLTISSLKD---GGKASQAHVR--------IGDVVL--SIDGISAQ 62 (103)
T ss_dssp CEEEEEE---SSSCCSCCEEEETTTTEEEEECCCCT---TCHHHHTTCC--------TTCBEE--EETTEECS
T ss_pred EEEEEEe---CCCccCEEEeccccCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 4455554 678899999742 2 22389999985 7999999984 454443 56777653
No 82
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=81.10 E-value=1.4 Score=34.30 Aligned_cols=40 Identities=23% Similarity=0.545 Sum_probs=29.2
Q ss_pred eEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhh-H
Q 011319 300 IEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSG-L 342 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsG-L 342 (488)
+.+.++.+...|||.|..-.+ .-++|.+|.. ++||.++| |
T Consensus 13 ~~v~l~~~~~g~G~~~~~~~~~~~~~~V~~V~~---~spA~~aG~l 55 (103)
T 1wfv_A 13 FTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAE---DGPAIRNGRM 55 (103)
T ss_dssp EECCEECCTTSSSBCCEEETTTTEEEECCCBCT---TSHHHHHCSS
T ss_pred EEEEEecCCCcCCEEEeccccCCCCEEEEEECC---CChHHHcCCC
Confidence 445555555679999985443 3588999986 69999999 6
No 83
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=80.95 E-value=1.2 Score=34.57 Aligned_cols=53 Identities=23% Similarity=0.434 Sum_probs=37.2
Q ss_pred EeeecCCCcceeeeeeecc----cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 301 EIKLKEGDSKLGFAISRTE----EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTE----EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.+.++.+...|||.+.... +.-++|.+|.. ++||.++|| +.|-.++ .+.|++|
T Consensus 6 ~v~l~k~~~~~G~~l~~~~~~~~~~g~~V~~V~~---~spA~~aGl--------~~GD~I~--~ing~~v 62 (96)
T 2v90_A 6 CLHLEKGPQGFGFLLREEKGLDGRPGQFLWEVDP---GLPAKKAGM--------QAGDRLV--AVAGESV 62 (96)
T ss_dssp EEEEECBTTBSCEEEEEEECTTSCEEEEEEEECT---TSHHHHTTC--------CTTEEEE--EETTEEC
T ss_pred EEEEEeCCCcccEEEEeccCCCCCCCeEEEEECC---CChHHHcCC--------CCCCEEE--EECCEEC
Confidence 3455556668999997643 22589999985 799999998 3455443 6777766
No 84
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=80.94 E-value=1.5 Score=35.94 Aligned_cols=53 Identities=19% Similarity=0.392 Sum_probs=37.2
Q ss_pred EeeecCCCcceeeeeeeccc---ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 301 EIKLKEGDSKLGFAISRTEE---GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTEE---GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
++.++-+..-|||.|....+ .-++|.+|.. +.||.++| | +.|-.++ .|.|++|
T Consensus 28 ~v~l~k~~~glG~~l~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~Il--~Ing~~v 84 (124)
T 2daz_A 28 IIELEKDKNGLGLSLAGNKDRSRMSIFVVGINP---EGPAAADGRM--------RIGDELL--EINNQIL 84 (124)
T ss_dssp EEEEECCSSCCCEEEECBSSTTSCCEEEEEECT---TSHHHHHTCC--------CTTCEEC--EESSCBC
T ss_pred EEEEEeCCCccCEEEeccCCCCcCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEEC
Confidence 45555667789999976532 3589999996 79999999 7 3454433 4666655
No 85
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=80.59 E-value=1.4 Score=35.85 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=39.5
Q ss_pred eeEeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 299 AIEIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+-.+.++.+...|||.|.... ++-++|.+|.. ++||+++|| +.|-.++ .+.|++|
T Consensus 10 ~r~v~l~~~~~g~G~~l~~~~~~~gv~V~~V~~---~spA~~aGl--------~~GD~I~--~ing~~v 65 (128)
T 2kjd_A 10 PRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDP---DSPAEASGL--------RAQDRIV--EVNGVCM 65 (128)
T ss_dssp CEEEEEECCSSSCCEEEEECSSSCSEEEEEECT---TSHHHHHTC--------CTTCEEE--EETTEEC
T ss_pred cEEEEEecCCCcccEEEEecCCCCCEEEEEeCC---CChHHHcCC--------CCCCEEE--EECCEEC
Confidence 334556666778999997654 35799999996 799999998 3555443 5677665
No 86
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=80.51 E-value=0.9 Score=38.85 Aligned_cols=54 Identities=26% Similarity=0.484 Sum_probs=39.1
Q ss_pred eeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 299 AIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.+++.+.-+...|||.|... ...++|.+|.+ +.||+++| |+ .|-.++ .|.|++|
T Consensus 28 ~~~~~l~k~~~glG~~i~~~-~~~v~V~~V~~---gspA~~aG~L~--------~GD~Il--~VnG~~v 82 (126)
T 1wif_A 28 VIQTKLTVGNLGLGLVVIQN-GPYLQISHLIN---KGAAASDGILQ--------PGDVLI--SVGHANV 82 (126)
T ss_dssp EEEEEEECCTTCCCCCEEEE-TTEEEECCCCT---TSSGGGCSSSC--------TTCBEE--EESSSCC
T ss_pred eEEEEEecCCceEeEEEEcC-CCcEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEEc
Confidence 45667777888999998654 45689999996 79999999 63 454433 5566554
No 87
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=80.31 E-value=1.3 Score=36.87 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=30.1
Q ss_pred eEeeecCCCcceeeeeeeccc-----ceEEEEEeecCCCCCccchh-hHH
Q 011319 300 IEIKLKEGDSKLGFAISRTEE-----GFIYISTVIDDDENIPSTRS-GLS 343 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTEE-----GFiyVsSV~~~~~g~~a~Rs-GL~ 343 (488)
.++.+.-+..-|||.|..-.+ .-|||.+|.. +.||+++ ||+
T Consensus 31 ~~v~l~k~~~glG~~i~gg~~~~~~~~~i~I~~V~~---gs~A~~aggL~ 77 (130)
T 1i16_A 31 CTVTLEKMSAGLGFSLEGGKGSLHGDKPLTINRIFK---GAASEQSETVQ 77 (130)
T ss_dssp EEEEEETTSSSTTEEEECCCCCSSSCCCCEEEEECS---SCCCSSSCCCC
T ss_pred EEEEEEcCCCccCEEEecCcCCCCCCCCEEEEEECC---CCHHHHcCCCC
Confidence 344455556789999985433 3599999996 7999999 874
No 88
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=79.76 E-value=0.33 Score=37.52 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=47.0
Q ss_pred eeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceecc
Q 011319 302 IKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCF 380 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~ 380 (488)
+.++.+...|||.|.-.. ..-++|.+|.. ++||+++|| +.|-.++ .+.|++|- .+
T Consensus 7 v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~---~spA~~aGl--------~~GD~I~--~ing~~v~-----------~~ 62 (91)
T 2vsp_A 7 CRLAKGENGYGFHLNAIRGLPGSFIKEVQK---GGPADLAGL--------EDEDVII--EVNGVNVL-----------DE 62 (91)
T ss_dssp EEEECBTTBTSCCCBCCTTCSCCBC-CCCT---TSHHHHTTC--------CTTCEEE--EETTEECT-----------TS
T ss_pred EEEEeCCCcccEEEEeccCCCCeEEEEECC---CChHHHcCC--------CCCCEEE--EECCEECC-----------CC
Confidence 444445568999997643 35579999985 799999998 3555443 67777663 12
Q ss_pred CcccccccccccccccCceEEEEE
Q 011319 381 DTVSLSQKLSLHRHAKVPILLHVF 404 (488)
Q Consensus 381 Dt~slsqkLslhr~a~~pI~lHvm 404 (488)
+...+.+.|..+ ..+|.|.|.
T Consensus 63 ~~~~~~~~l~~~---g~~v~l~v~ 83 (91)
T 2vsp_A 63 PYEKVVDRIQSS---GKNVTLLVC 83 (91)
T ss_dssp CHHHHHHHHTTS---CSEEEEEEE
T ss_pred CHHHHHHHHHcC---CCEEEEEEE
Confidence 334455555433 556666554
No 89
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=79.66 E-value=1.6 Score=33.96 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=37.0
Q ss_pred eeecCCCcceeeeeeeccc-ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 302 IKLKEGDSKLGFAISRTEE-GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRTEE-GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+.++.+...|||.|....+ +-++|.+|.. ++||.++||+ .|-.++ .+.|++|
T Consensus 13 ~~l~~~~~g~G~~~~~~~~~~g~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v 65 (98)
T 2jxo_A 13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDP---DSPAEASGLR--------AQDRIV--EVNGVCM 65 (98)
T ss_dssp EEEECTTTCCCEEEECCCSSSCEEEEEECT---TSHHHHHTCC--------TTCEEE--EETTEEC
T ss_pred EEEEeCCCcccEEEEecCCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEEC
Confidence 3445556789999976553 4588999985 7999999983 455444 6677665
No 90
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=79.39 E-value=1.3 Score=35.07 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=33.7
Q ss_pred ecCCCcceeeeeeecc--------------cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 304 LKEGDSKLGFAISRTE--------------EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 304 ~~~gdtRlGfaIsRTE--------------EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++.+..-|||.|.... .-++||.+|.. ++||+++||+ .|-.+ =.+.|++|.
T Consensus 12 l~k~~~g~G~~l~~~~~~~~~~~~~~~~~~~p~~~V~~v~~---~spA~~aGl~--------~GD~I--~~ing~~v~ 76 (107)
T 3qe1_A 12 IVKSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLP---GGAADRAGVR--------KGDRI--LEVNGVNVE 76 (107)
T ss_dssp EECBTTBTCEEEECCSSSCCCCEESSSSEESCCEEEEEECT---TSHHHHHTCC--------TTCEE--EEETTEECT
T ss_pred EEECCCCCCEEEEcccccCCcceeccccccCCceEEEEECC---CCHHHHcCCC--------CCCEE--EEECCEECC
Confidence 3344447999996652 12357999986 7999999984 45443 346776654
No 91
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=79.35 E-value=1.4 Score=35.56 Aligned_cols=53 Identities=13% Similarity=0.356 Sum_probs=36.0
Q ss_pred eeecCCCc-ceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 302 IKLKEGDS-KLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 302 i~~~~gdt-RlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+.++-+.. .|||.|.....| ++|.+|.. +.||+++||. +.|-.++ .|.|++|.
T Consensus 29 v~l~k~~~~~lG~~i~~~~~g-v~V~~V~~---~spA~~aGll-------~~GD~I~--~vng~~v~ 82 (113)
T 1va8_A 29 VRIEKARDIPLGATVRNEMDS-VIISRIVK---GGAAEKSGLL-------HEGDEVL--EINGIEIR 82 (113)
T ss_dssp EEEEECTTCCCCEEEEECSSS-EEEEEECT---TSHHHHHTCC-------CTTCEEE--EETTEECT
T ss_pred EEEEeCCCCceeEEEEeCCCC-EEEEEeCC---CCHHHHcCCC-------CCCCEEE--EECCEECC
Confidence 44444444 799998766544 78999996 7999999982 2344433 57777764
No 92
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=79.04 E-value=1.5 Score=35.41 Aligned_cols=54 Identities=28% Similarity=0.405 Sum_probs=37.4
Q ss_pred EeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++.++.+..-|||.|.... +.-++|.+|.. ++||.++| | +.|-.+ =.+.|++|.
T Consensus 17 ~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~I--~~vng~~v~ 72 (119)
T 1tp5_A 17 RIVIHRGSTGLGFNIVGGEDGEGIFISFILA---GGPADLSGEL--------RKGDQI--LSVNGVDLR 72 (119)
T ss_dssp EEEEECTTSCCCEEEEECGGGCCEEEEEECT---TSHHHHHSCC--------CTTEEE--EEETTEECT
T ss_pred EEEEEECCCCccEEEecCCCCCCEEEEEECC---CCHHHHcCCC--------CCCCEE--EEECCEECC
Confidence 3444445566999998654 35689999996 78999999 7 345443 357777663
No 93
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=78.81 E-value=1.5 Score=36.25 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=32.1
Q ss_pred Ccceeeeeeec------c-----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 308 DSKLGFAISRT------E-----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 308 dtRlGfaIsRT------E-----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+..|||.|..- + +.-++|++|.. ++||+++| | +.|-.++ .|.|++|
T Consensus 41 ~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~Il--~vng~~v 98 (128)
T 1nf3_C 41 EKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVP---GGLAQSTGLL--------AVNDEVL--EVNGIEV 98 (128)
T ss_dssp TSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECT---TCHHHHHTCC--------CTTCEEE--EETTEES
T ss_pred CCCccEEEEccccccccccccCCCCCEEEEEECC---CCHHHHCCCC--------CCCCEEE--EECCEEC
Confidence 57899999732 1 23599999996 79999999 6 3444433 4666665
No 94
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=78.23 E-value=1.9 Score=34.84 Aligned_cols=54 Identities=17% Similarity=0.365 Sum_probs=35.6
Q ss_pred eEeeecCCC-cceeeeeeeccc--ceEEEEEeecCCCCCccchh--hHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 300 IEIKLKEGD-SKLGFAISRTEE--GFIYISTVIDDDENIPSTRS--GLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 300 lEi~~~~gd-tRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~Rs--GL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
..+.++.++ ..|||.|..-.+ .-++|.+|.. +.||+++ ||+ .|-.++ .+.|++|
T Consensus 17 ~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~---~spA~~a~gGL~--------~GD~Il--~ing~~v 75 (119)
T 2cs5_A 17 VLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAP---GTPADLCVPRLN--------EGDQVV--LINGRDI 75 (119)
T ss_dssp EEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECS---SSTTTSSSSCCC--------TTCEEE--EETTBCT
T ss_pred EEEEEEeCCCCCcCEEEecccCCCCCeEEEEECC---CCHHHHhhcCCC--------CCCEEE--EECCEEC
Confidence 344444444 469999975432 1389999996 7999999 984 455443 5666655
No 95
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=78.23 E-value=2 Score=35.29 Aligned_cols=55 Identities=27% Similarity=0.535 Sum_probs=38.1
Q ss_pred eeEeeecCCCcceeeeeeeccc-----ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 299 AIEIKLKEGDSKLGFAISRTEE-----GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTEE-----GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.+.+.+..+...|||.|.-... .-++|.+|.. ++||.++| | +.|-.++ .|.|++|
T Consensus 31 ~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~---gspA~~aG~L--------~~GD~Il--~Ing~~v 91 (121)
T 2kom_A 31 RLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILP---RGAAIQDGRL--------KAGDRLI--EVNGVDL 91 (121)
T ss_dssp EEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECT---TSHHHHHTCC--------CSSSEEE--EETTEEC
T ss_pred EEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECC---CChHHHcCCC--------CCCCEEE--EECCEEc
Confidence 3445555566779999986542 3489999996 79999999 6 4455443 5677765
No 96
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.16 E-value=1.5 Score=36.39 Aligned_cols=45 Identities=24% Similarity=0.488 Sum_probs=32.0
Q ss_pred ceeeeeee-cccc--eEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 310 KLGFAISR-TEEG--FIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 310 RlGfaIsR-TEEG--FiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.|||.|.- +++| -++|.+|.. ++||.++||+ .|-.+ =.+.|++|-
T Consensus 30 ~~G~~v~~~~~~~~~gv~V~~V~~---~spA~~aGL~--------~GD~I--l~Ing~~v~ 77 (114)
T 2d8i_A 30 TYGFSLSSVEEDGIRRLYVNSVKE---TGLASKKGLK--------AGDEI--LEINNRAAD 77 (114)
T ss_dssp CCCCEEEEEEETTEEEEEEEECCT---TSSHHHHTCC--------TTCCE--EEESSCBGG
T ss_pred ccCEEEEecCcCCcCCEEEEEeCC---CCHHHHcCCC--------CCCEE--EEECCEECC
Confidence 69999974 4544 589999996 7999999984 44433 255666553
No 97
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=78.13 E-value=1.4 Score=34.99 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=49.4
Q ss_pred eEeeecCC-Ccceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCce
Q 011319 300 IEIKLKEG-DSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAV 377 (488)
Q Consensus 300 lEi~~~~g-dtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaI 377 (488)
+++.+..+ ...|||.|...+ .+-++|.+|.. ++||.++||- +.|-.++ .+.|+++--
T Consensus 3 ~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~---~spA~~aGll-------~~GD~I~--~ing~~v~~--------- 61 (112)
T 1qau_A 3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIR---GGAAEQSGLI-------QAGDIIL--AVNDRPLVD--------- 61 (112)
T ss_dssp EEEEEECBTTTBTSEEEEECSSSSCEEEEEECT---TSHHHHHTCC-------CTTCEEE--EETTEECTT---------
T ss_pred EEEEEEcCCCCceeEEEEecCCCCCEEEEEeCC---CChHHHcCCC-------CCCCEEE--EECCEECCC---------
Confidence 34555444 467999998765 35789999996 7999999851 2344433 577776632
Q ss_pred eccCcccccccccccccccCceEEEEEE
Q 011319 378 RCFDTVSLSQKLSLHRHAKVPILLHVFL 405 (488)
Q Consensus 378 rC~Dt~slsqkLslhr~a~~pI~lHvm~ 405 (488)
+....+.+.|.. ....++.|.+.-
T Consensus 62 --~~~~~~~~~l~~--~~g~~v~l~v~R 85 (112)
T 1qau_A 62 --LSYDSALEVLRG--IASETHVVLILR 85 (112)
T ss_dssp --SCHHHHHHHHHH--SCSSSEEEEEEE
T ss_pred --CCHHHHHHHHHh--CCCCcEEEEEEe
Confidence 112233333332 245777777754
No 98
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=78.08 E-value=1.5 Score=36.01 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=39.9
Q ss_pred cceeeeEeeecCCCcceeeeeeeccc--ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 295 GGELAIEIKLKEGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 295 ~~E~~lEi~~~~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+-++.|+|++.+ ...|||.+...++ .=++|.+|.. ++||.++||+ .|-.++ .+.|++|
T Consensus 19 g~~~~v~v~~~~-~~~lG~~~~~~~~~~~gv~V~~V~~---~spA~~aGL~--------~GD~I~--~vng~~v 78 (128)
T 1uf1_A 19 GDEKKVNLVLGD-GRSLGLTIRGGAEYGLGIYITGVDP---GSEAEGSGLK--------VGDQIL--EVNGRSF 78 (128)
T ss_dssp SSEEEEEEECCS-SCCCCEEEECCTTTTCCCEEEEECT---TCHHHHHTCC--------TTCEEE--EETTEEC
T ss_pred CcEEEEEEEECC-CCccCEEEECcccCCCCEEEEEECC---CCHHHHCCCC--------CCCEEE--EECCEEC
Confidence 355667777654 3679998876432 1378999985 7999999984 555543 6777665
No 99
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=77.91 E-value=1.8 Score=33.10 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=34.0
Q ss_pred CCcceeeeeeecc--cceEEEEEeecCCCCCccchh-hHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 307 GDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRS-GLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 307 gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~Rs-GL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+...|||.|.... +.-++|++|.. ++||+++ ||+ .|-.+ =.+.|++|.
T Consensus 14 ~~~~lG~~i~~~~~~~~g~~V~~V~~---~spA~~aggl~--------~GD~I--~~ing~~v~ 64 (90)
T 1qav_A 14 DAGGLGISIKGGRENKMPILISKIFK---GLAADQTEALF--------VGDAI--LSVNGEDLS 64 (90)
T ss_dssp TTTCCCEEEEEEGGGTEEEEEEEECT---TSHHHHTTCCC--------TTEEE--EEETTEECT
T ss_pred CCCCcCEEEEcccCCCCCEEEEEECC---CCHHHhcCCCC--------CCCEE--EEECCEECC
Confidence 3568999997532 24589999996 7999999 883 45443 357777663
No 100
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=77.78 E-value=1.2 Score=35.56 Aligned_cols=71 Identities=15% Similarity=0.427 Sum_probs=43.0
Q ss_pred eeecCCCc-ceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceecc
Q 011319 302 IKLKEGDS-KLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCF 380 (488)
Q Consensus 302 i~~~~gdt-RlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~ 380 (488)
+.++.++. .|||.|. .|+ |++|.+ ++||+|+||+ .|.. |=.|.|+.|. -.
T Consensus 8 v~l~k~~~g~~Gf~i~---~g~--I~~v~~---gspA~~aGl~--------~GD~--Il~VNG~~v~-----------~~ 58 (82)
T 1r6j_A 8 ITMHKDSTGHVGFIFK---NGK--ITSIVK---DSSAARNGLL--------TEHN--ICEINGQNVI-----------GL 58 (82)
T ss_dssp EEEECCTTSCCCEEEE---TTE--EEEECT---TSHHHHHTCC--------SSEE--EEEETTEECT-----------TC
T ss_pred EEEEECCCCCeEEEEE---CCE--EEEecC---CCHHHHcCCC--------CCCE--EEEECCEEcC-----------CC
Confidence 44555544 6999995 465 688986 7999999973 4443 2345666542 23
Q ss_pred CcccccccccccccccCceEEEEE
Q 011319 381 DTVSLSQKLSLHRHAKVPILLHVF 404 (488)
Q Consensus 381 Dt~slsqkLslhr~a~~pI~lHvm 404 (488)
++.++.+.| |.+...+.|-++
T Consensus 59 ~~~evv~ll---r~~g~~V~L~v~ 79 (82)
T 1r6j_A 59 KDSQIADIL---STSGTVVTITIM 79 (82)
T ss_dssp CHHHHHHHH---HHSCSEEEEEEE
T ss_pred CHHHHHHHH---hcCCCEEEEEEE
Confidence 333444433 456666666654
No 101
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=77.72 E-value=5.3 Score=31.45 Aligned_cols=43 Identities=16% Similarity=0.287 Sum_probs=28.7
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+++||+|.+|. |.. + ..-..+.+.|.+. +.++ .|.+.|.|++.
T Consensus 22 L~~GD~Il~In-G~~------------v-----~~~~~l~~~l~~~-~~g~-~v~l~v~R~g~ 64 (94)
T 2kl1_A 22 LEAGDRIAAID-GQP------------I-----NTSEQIVSYVREK-QAGD-RVRVTFIRDRK 64 (94)
T ss_dssp BCTTCEEEEET-TBC------------C-----CCHHHHHHHHHHS-CTTC-CEEEEEEETTE
T ss_pred CCCCCEEEEEC-CEE------------C-----CCHHHHHHHHHhC-CCCC-EEEEEEEECCE
Confidence 99999999986 211 2 1125667776643 2234 89999999875
No 102
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=77.50 E-value=2.1 Score=34.30 Aligned_cols=57 Identities=30% Similarity=0.329 Sum_probs=38.0
Q ss_pred eeeeEeeecCCCcceeeeeeec--ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 297 ELAIEIKLKEGDSKLGFAISRT--EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 297 E~~lEi~~~~gdtRlGfaIsRT--EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
|..+.+..+ +...|||.|..- .+.=++|.+|.. ++||.++||+ .|-.++ .+.|++|-
T Consensus 16 ~~~v~~~~~-~~~~lG~~l~~~~~~~~gv~V~~V~~---~s~A~~aGL~--------~GD~Il--~vng~~v~ 74 (114)
T 1x5n_A 16 EKKVFISLV-GSRGLGCSISSGPIQKPGIFISHVKP---GSLSAEVGLE--------IGDQIV--EVNGVDFS 74 (114)
T ss_dssp SEEEEECCC-SSCCCCEEEEECCSSSCSEEEEEECT---TSTTTTTTCC--------TTCEEE--EETTEETT
T ss_pred cEEEEEEEc-CCCceeEEEeecCCCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 344555544 466899999742 122389999986 6899999984 455443 67777763
No 103
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=77.01 E-value=1 Score=35.54 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=34.6
Q ss_pred eEeeecCCCcceeeeeeec----------ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 300 IEIKLKEGDSKLGFAISRT----------EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRT----------EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+++.++.+. .|||.|..- .+.-++|.+|.. ++||++ ||+ .|-.++ .+.|++|
T Consensus 13 ~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~---~spA~~-gL~--------~GD~I~--~vng~~v 74 (103)
T 1n7t_A 13 IRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQP---EGPASK-LLQ--------PGDKII--QANGYSF 74 (103)
T ss_dssp EEEEEECSS-CCCBEEEECTTSSBCSSCSSCCSEECCCBSS---SSTTSS-SCC--------TTCEEE--EETTEEC
T ss_pred EEEEEccCC-CccEEEEcccCCCCCccccCCCCEEEEEECC---CCchHH-CCC--------CCCEEE--EECCEEC
Confidence 345555543 799999862 334589999996 689999 984 454433 5666655
No 104
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=76.85 E-value=2.2 Score=36.10 Aligned_cols=58 Identities=28% Similarity=0.461 Sum_probs=39.4
Q ss_pred ceeeeEeeecCCCcceeeeeeeccc-------ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 296 GELAIEIKLKEGDSKLGFAISRTEE-------GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 296 ~E~~lEi~~~~gdtRlGfaIsRTEE-------GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.+..+++.+..+...|||.+....+ .-+||.+|.. +.||+++| |+ .|-. |=.+.|++|
T Consensus 98 ~~~~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~---gs~A~~aG~L~--------~GD~--Il~Vng~~v 163 (196)
T 3gsl_A 98 AEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIE---GGAAHKDGRLQ--------IGDK--ILAVNSVGL 163 (196)
T ss_dssp CEEEEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECT---TSHHHHHCCCC--------TTCE--EEEETTEEC
T ss_pred ccccEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECC---CChHHhcCCCC--------CCCE--EEEECCCcC
Confidence 4455666666666689999975432 2379999995 79999999 73 4543 345666655
No 105
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=76.82 E-value=1.1 Score=36.20 Aligned_cols=47 Identities=21% Similarity=0.416 Sum_probs=33.4
Q ss_pred CCcceeeeeeec----ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 307 GDSKLGFAISRT----EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 307 gdtRlGfaIsRT----EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
....|||.|..- .+.-+||++|.. +.||+++| |+ .|-.++ .+.|+.|
T Consensus 15 ~~~~lG~~i~g~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~Il--~Vng~~v 66 (108)
T 3cbz_A 15 KYNFLGISIVGQSNERGDGGIYIGSIMK---GGAVAADGRIE--------PGDMLL--QVNDMNF 66 (108)
T ss_dssp HHCCCCEEEEEECSSTTCCEEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEET
T ss_pred CCCccCEEEEcCcCCCCCCCEEEEEECC---CChHHhcCCCC--------CCCEEE--EECCEEC
Confidence 356799999753 246799999996 79999999 73 455443 4666654
No 106
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=76.73 E-value=1.2 Score=35.78 Aligned_cols=50 Identities=26% Similarity=0.521 Sum_probs=32.7
Q ss_pred ecCCCcceeeeee-------ecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 304 LKEGDSKLGFAIS-------RTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 304 ~~~gdtRlGfaIs-------RTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+..+...|||.|. +..++-++|.+|.. ++||+++| |+ .|-.++ .+.|++|
T Consensus 8 ~~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~---gspA~~aG~L~--------~GD~Il--~Vng~~v 65 (106)
T 4amh_A 8 VPRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIE---GGAAHKDGKLQ--------IGDKLL--AVNNVAL 65 (106)
T ss_dssp ----CCCSCEEEEECTTSCSBTTBCCEEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred CCCCCCccCEEEEeccCCccccCCCCEEEEEECC---CCHHHHCCCCC--------CCCEEE--EECCEEC
Confidence 4456788999997 12334589999996 69999999 73 444433 5667665
No 107
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=76.43 E-value=1.9 Score=32.81 Aligned_cols=53 Identities=25% Similarity=0.480 Sum_probs=36.3
Q ss_pred eEeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 300 IEIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+++.++.+...|||.+.-.+ ++-++|+.| . ++||. +||+ .|-.++ .+.|++|-
T Consensus 5 ~~v~l~k~~~g~G~~~~~~~~~~~~~v~~v-~---~spA~-aGl~--------~GD~I~--~vng~~v~ 58 (88)
T 3bpu_A 5 ITVHIVKGPMGFGFTIADSPGGGGQRVKQI-V---DSPRS-RGLK--------EGDLIV--EVNKKNVQ 58 (88)
T ss_dssp EEEEEECBTTBSSCEEEECTTSSSEEEEEC-C---C--CC-TTCC--------TTCEEE--EETTEECT
T ss_pred EEEEEEcCCCceeEEEEecCCCCcEEEEEe-c---CChhH-hCCC--------CCCEEE--EECCEEcC
Confidence 56666677788999998653 467888887 4 57888 8984 555543 67777764
No 108
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=76.34 E-value=1.6 Score=35.32 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=33.3
Q ss_pred eeecCCCcceeeeeee----cccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 302 IKLKEGDSKLGFAISR----TEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 302 i~~~~gdtRlGfaIsR----TEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+.++.+ .-|||.|.- ..+.-+||++|.. +.||+++| |+ .|-.++ .|.|+.+
T Consensus 19 v~l~k~-~glG~~i~gg~~~~~~~~~~V~~v~~---~s~A~~aG~l~--------~GD~Il--~Vng~~~ 74 (109)
T 1wi4_A 19 ITVTKE-TGLGLKILGGINRNEGPLVYIHEVIP---GGDCYKDGRLK--------PGDQLV--SINKESM 74 (109)
T ss_dssp EEECCS-SCCCEEEEECSSSSSCSSEEEEEECT---TSHHHHHCSCC--------TTCBEE--EETTSCC
T ss_pred EEEeCC-CccCEEEEeccCCCCCCCEEEEEeCC---CChHHHCCCCC--------CCCEEE--EECCEEC
Confidence 334443 679999973 2222489999996 79999999 73 444443 4666543
No 109
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=76.25 E-value=2.3 Score=33.53 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=32.8
Q ss_pred cceeeeeeeccc--ceEEEEEeecCCCCCccchhh--HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 309 SKLGFAISRTEE--GFIYISTVIDDDENIPSTRSG--LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 309 tRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsG--L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
..|||.|..-.+ .-++|..|.. ++||+++| |+ .|-.++ .+.|+.|.
T Consensus 29 ~~~G~~~~gg~~~~~~~~V~~V~~---~spA~~aG~rL~--------~GD~Il--~ing~~v~ 78 (107)
T 3nfk_A 29 GRFGFNVKGGYDQKMPVIVSRVAP---GTPADLCVPRLN--------EGDQVV--LINGRDIA 78 (107)
T ss_dssp SCCCEEEEEEGGGTEEEEEEEECT---TSHHHHSSSCCC--------TTCEEE--EETTEECT
T ss_pred CCCCEEEEccCCCCCCeEEEEECC---CCchHHcCCccC--------CCCEEE--EECCEECC
Confidence 789999976432 2488999996 79999999 74 454433 56776654
No 110
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=76.07 E-value=2.3 Score=32.99 Aligned_cols=51 Identities=14% Similarity=0.362 Sum_probs=36.7
Q ss_pred eeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 302 IKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+.++.+...|||.+.. +.| ++|.+|.. ++||.++|| +.|-.++ .+.|++|.
T Consensus 12 v~l~~~~~~~G~~l~~-~~g-~~V~~V~~---~spA~~aGL--------~~GD~I~--~ing~~v~ 62 (93)
T 2dls_A 12 VIIQKDQHGFGFTVSG-DRI-VLVQSVRP---GGAAMKAGV--------KEGDRII--KVNGTMVT 62 (93)
T ss_dssp EEEECSSSSCCEEEEC-SSS-CEEEEECS---SSTTTTTTC--------CSSCEEE--EETTEECS
T ss_pred EEEEeCCCceeEEEeC-CCC-EEEEEECC---CCHHHHcCC--------CCCCEEE--EECCEECC
Confidence 4445566789999864 344 78999986 799999998 4565544 77787663
No 111
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=75.74 E-value=2 Score=37.76 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=36.1
Q ss_pred eEeeecCCCcceeeeeeec--ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 300 IEIKLKEGDSKLGFAISRT--EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRT--EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++|.-.. ...|||.|... ..+-++|++|.. |+||+++|| +.|-.++ .|.|++|.
T Consensus 88 v~l~k~~-~~~lG~~i~~~~~~~~~~~V~~V~~---gspA~~aGL--------~~GD~Il--~vng~~v~ 143 (192)
T 3k1r_A 88 VRLDRLH-PEGLGLSVRGGLEFGCGLFISHLIK---GGQADSVGL--------QVGDEIV--RINGYSIS 143 (192)
T ss_dssp EEEETTS-TTCCCEEEEEEGGGTEEEEEEEECT---TSHHHHTTC--------CTTEEEE--EETTEECT
T ss_pred EEEEeCC-CCceeEEEEcccccCCCEEEEEECC---CChHHHcCC--------CCCCEEE--EECCEECC
Confidence 4444443 45899999632 234689999995 799999997 3555433 46776653
No 112
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=75.73 E-value=1.9 Score=34.33 Aligned_cols=76 Identities=17% Similarity=0.347 Sum_probs=48.0
Q ss_pred CCCcceeeeeeecccc--------------eEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceee
Q 011319 306 EGDSKLGFAISRTEEG--------------FIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIV 371 (488)
Q Consensus 306 ~gdtRlGfaIsRTEEG--------------FiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmV 371 (488)
.+...|||.|....+- -++|.+|.. ++||.++||+ .|-.++ .|.|++|.-|
T Consensus 16 ~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~---~spA~~aGl~--------~GD~I~--~vng~~v~~~-- 80 (109)
T 1q3o_A 16 KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDE---GGVAWRAGLR--------MGDFLI--EVNGQNVVKV-- 80 (109)
T ss_dssp CTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEECTTC--
T ss_pred CCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECCCC--
Confidence 3456899999765541 279999996 7999999984 455443 6778776432
Q ss_pred ecCCceeccCcccccccccccccccCceEEEEEEecC
Q 011319 372 SSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVFLWDQ 408 (488)
Q Consensus 372 sSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm~W~~ 408 (488)
++..+.+.| +.....|.|.|+-.+.
T Consensus 81 ---------~~~~~~~~l---~~~~~~v~l~v~~~~~ 105 (109)
T 1q3o_A 81 ---------GHRQVVNMI---RQGGNTLMVKVVMVTR 105 (109)
T ss_dssp ---------CHHHHHHHH---HHTTTEEEEEEEEEEC
T ss_pred ---------CHHHHHHHH---HhCCCEEEEEEEECCC
Confidence 333343333 2235667777765543
No 113
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=75.63 E-value=15 Score=29.00 Aligned_cols=59 Identities=15% Similarity=0.363 Sum_probs=37.2
Q ss_pred cEEEEEEccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEe
Q 011319 20 TVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVR 99 (488)
Q Consensus 20 ~V~~i~Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVr 99 (488)
+|+......++. |+ . -|++||+|.+|. |. .+ ..-..|.+.|.+... + ..|.+.|.
T Consensus 8 Gv~V~~V~~~sp-A~---~-GL~~GD~I~~In-g~------------~v-----~~~~dl~~~l~~~~~-g-~~v~l~v~ 62 (100)
T 3i18_A 8 GVYVMSVKDDVP-AA---D-VLHAGDLITEID-GN------------AF-----KSSQEFIDYIHSKKV-G-DTVKINYK 62 (100)
T ss_dssp CEEEEEECTTSG-GG---G-TCCTTCEEEEET-TB------------CC-----SSHHHHHHHHHTSCT-T-CEEEEEEE
T ss_pred CEEEEEeCCCCc-hH---H-CCCCCCEEEEEC-CE------------EC-----CCHHHHHHHHHhCCC-C-CEEEEEEE
Confidence 455455445554 43 3 699999999985 21 12 223577777775422 3 48999999
Q ss_pred cCcc
Q 011319 100 RGAE 103 (488)
Q Consensus 100 RG~~ 103 (488)
|++.
T Consensus 63 R~g~ 66 (100)
T 3i18_A 63 HGDK 66 (100)
T ss_dssp ETTE
T ss_pred ECCE
Confidence 9876
No 114
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=75.58 E-value=1.2 Score=36.48 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=31.2
Q ss_pred eeEeeecCCC-cceeeeeeeccc-ceEEEEEeecCCCCCccchhhH
Q 011319 299 AIEIKLKEGD-SKLGFAISRTEE-GFIYISTVIDDDENIPSTRSGL 342 (488)
Q Consensus 299 ~lEi~~~~gd-tRlGfaIsRTEE-GFiyVsSV~~~~~g~~a~RsGL 342 (488)
..++.+..++ ..|||.|...++ +-++|.+|.. ++||.++||
T Consensus 9 ~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~---~spA~~aGl 51 (127)
T 1b8q_A 9 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIR---GGAAEQSGL 51 (127)
T ss_dssp SEEEEEECTTTSCCSCCEEECTTSSCEEECCCSS---SSSHHHHSS
T ss_pred eEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCC---CCHHHHcCC
Confidence 3445565565 789999987654 5789999986 799999996
No 115
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=75.58 E-value=1.6 Score=37.00 Aligned_cols=54 Identities=30% Similarity=0.475 Sum_probs=37.8
Q ss_pred EeeecCCCcceeeeeeecc-------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEGDSKLGFAISRTE-------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTE-------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
|+.++-+...|||.|.--. ..-+||++|.. ++||.++| |+ .|-.+ =.|.|++|-
T Consensus 8 ~v~l~~~~~~lG~~i~~g~~~~~~~~~~g~~V~~V~~---~spA~~aG~l~--------~GD~I--~~vng~~v~ 69 (196)
T 3gsl_A 8 EITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIP---GGAAAQDGRLR--------VNDSI--LFVNEVDVR 69 (196)
T ss_dssp EEEEECBTTBSSEEEECCTTSCTTSSCCCEEEEEECT---TSHHHHHCCCC--------TTCEE--EEETTEECT
T ss_pred EEEEEECCCCCCEEEEcccCCcccCCCCCEEEEEECC---CChHHhcCCCC--------CCCEE--EEECCEECC
Confidence 5566666778999997542 34689999995 79999999 74 34433 256666653
No 116
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.10 E-value=1.7 Score=34.27 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=37.0
Q ss_pred eeEeeecCCCcceeeeeeec-c-cceEEEEEeecCCCCCccchh-hHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 299 AIEIKLKEGDSKLGFAISRT-E-EGFIYISTVIDDDENIPSTRS-GLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRT-E-EGFiyVsSV~~~~~g~~a~Rs-GL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.+++.++. ...|||.|.-- + ..-++|.+|.. ++||+++ ||+ .|-.++ .+.|++|
T Consensus 12 ~~~v~~~~-~~~~G~~~~gg~~~~~~v~V~~V~~---~spA~~agGL~--------~GD~I~--~ing~~v 68 (100)
T 2edp_A 12 YVPVQLQG-GAPWGFTLKGGLEHCEPLTVSKIED---GGKAALSQKMR--------TGDELV--NINGTPL 68 (100)
T ss_dssp EEEEECCS-CSCCCCCEEEEGGGTEEEEECCCCT---TSHHHHHTSCC--------TTCEEE--EETTEEC
T ss_pred EEEEEECC-CCCcCEEEeccCCCCCCeEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEEc
Confidence 35555543 46899999742 2 23489999985 7999999 885 455544 6777765
No 117
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=74.68 E-value=7.1 Score=31.88 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=30.0
Q ss_pred eeEeeecCCC-cceeeeeeec----c--cceEEEEEeecCCCCCccchhh
Q 011319 299 AIEIKLKEGD-SKLGFAISRT----E--EGFIYISTVIDDDENIPSTRSG 341 (488)
Q Consensus 299 ~lEi~~~~gd-tRlGfaIsRT----E--EGFiyVsSV~~~~~g~~a~RsG 341 (488)
..++.++.++ ..|||.|... + ..-++|.+|.. ++||+++|
T Consensus 16 ~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~---~spA~~aG 62 (122)
T 1v5q_A 16 TTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEA---DSPAERCG 62 (122)
T ss_dssp EEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECT---TSHHHHSC
T ss_pred eEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECC---CChHHHcC
Confidence 4456666663 8899999853 2 34589999996 79999999
No 118
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=74.46 E-value=1.7 Score=34.00 Aligned_cols=50 Identities=24% Similarity=0.374 Sum_probs=35.9
Q ss_pred cCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 305 KEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 305 ~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
..+...|||.|.... +.-++|.+|.. ++||.++||+ .|-.++ .+.|++|.
T Consensus 17 ~~~~~~lG~~~~~~~~~~~g~~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v~ 68 (101)
T 1uez_A 17 AKAHEGLGFSIRGGSEHGVGIYVSLVEP---GSLAEKEGLR--------VGDQIL--RVNDKSLA 68 (101)
T ss_dssp CCTTTCSSEEEEECTTTTCCEEEEEECT---TSHHHHHTCC--------SSCCEE--EETTEECS
T ss_pred CCCCCcccEEEeCCCCCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 345678999997653 23489999985 7999999984 455544 67777664
No 119
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=74.34 E-value=1.5 Score=35.86 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=45.0
Q ss_pred cceeeeeee---cccceEEEEEeecCCCCCccchh-hHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceeccCccc
Q 011319 309 SKLGFAISR---TEEGFIYISTVIDDDENIPSTRS-GLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVS 384 (488)
Q Consensus 309 tRlGfaIsR---TEEGFiyVsSV~~~~~g~~a~Rs-GL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~Dt~s 384 (488)
..|||.|.- ++.|-++|.+|.. +.||.++ || +.|-.++ .|.|+.|- .+++..
T Consensus 28 ~glG~~i~gg~~~~~~~i~I~~V~~---gspA~~aggL--------~~GD~Il--~Ing~~v~-----------~~~~~~ 83 (118)
T 1v6b_A 28 GSLDLALEGGVDSPVGKVVVSAVYE---GGAAERHGGV--------VKGDEIM--AINGKIVT-----------DYTLAE 83 (118)
T ss_dssp SCCCCEEEEBTTSSSCSEEEEECCT---TSHHHHHCSS--------CTTCEEE--EESSCBCT-----------TCBHHH
T ss_pred CccCEEEEcccCCCCCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEECC-----------CCCHHH
Confidence 379999974 3447799999996 7999999 88 3444443 35555443 223333
Q ss_pred cccccccccc-ccCceEEEEEE
Q 011319 385 LSQKLSLHRH-AKVPILLHVFL 405 (488)
Q Consensus 385 lsqkLslhr~-a~~pI~lHvm~ 405 (488)
+.+.|..++. ...+|.|.|.-
T Consensus 84 ~~~~l~~~~~~~g~~v~l~v~r 105 (118)
T 1v6b_A 84 AEAALQKAWNQGGDWIDLVVAV 105 (118)
T ss_dssp HHHHHHHHHHHTCSEEEEEEEC
T ss_pred HHHHHHHhhhcCCCeEEEEEEe
Confidence 4444443332 35677777764
No 120
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=73.83 E-value=2.1 Score=33.88 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=36.4
Q ss_pred EeeecCCC-cceeeeeeeccc--ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEGD-SKLGFAISRTEE--GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~gd-tRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++.++.++ ..|||.|..-.+ .-++|.+|.. ++||+++||+ .|-.++ .+.|++|.
T Consensus 18 ~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v~ 74 (104)
T 1wi2_A 18 IVTLKKPPGAQLGFNIRGGKASQLGIFISKVIP---DSDAHRAGLQ--------EGDQVL--AVNDVDFQ 74 (104)
T ss_dssp EEEECCCTTCCCSEEEECCSSSCCCCEEEEECT---TSHHHHHTCC--------TTCEEE--EETTEECS
T ss_pred EEEEEeCCCCCccEEEEcccCCCCCEEEEEeCC---CChHHHcCCC--------CCCEEE--EECCEECC
Confidence 33333333 689999986332 3478999986 7999999973 455443 57777653
No 121
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=73.73 E-value=6.9 Score=29.84 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=27.5
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCch--hhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGR--SGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gk--sgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+++||+|.+|. | ..+ .+. ..+.+.|++. ...|.+.|.|++.
T Consensus 46 l~~GD~I~~in-g------------~~v-----~~~~~~~~~~~l~~~----~~~v~l~v~r~~~ 88 (90)
T 2he4_A 46 LRAQDRLIEVN-G------------QNV-----EGLRHAEVVASIKAR----EDEARLLVVGPST 88 (90)
T ss_dssp CCTTCEEEEET-T------------EEC-----TTSCHHHHHHHHTTS----SSEEEEEEECCCC
T ss_pred CCCCCEEEEEC-C------------EEC-----CCCCHHHHHHHHHcC----CCcEEEEEEccCC
Confidence 99999999886 1 122 111 4566666542 4489999999876
No 122
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=73.62 E-value=3.2 Score=31.46 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=35.3
Q ss_pred eEeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccch-hhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 300 IEIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTR-SGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~R-sGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
++|...+ ...|||.|.... ..-++|++|.. ++||++ +|| +.|-.++ .+.|++|
T Consensus 6 v~l~~~~-~~~lG~~i~~~~~~~~~~~V~~V~~---gspA~~~agl--------~~GD~I~--~vng~~v 61 (87)
T 4e34_A 6 VLLLKED-HEGLGISITGGKEHGVPILISEIHP---GQPADRCGGL--------HVGDAIL--AVNGVNL 61 (87)
T ss_dssp EEEECCT-TBCCCEEEEEEGGGTEEEEEEEECT---TSHHHHHSCC--------CTTEEEE--EETTEEC
T ss_pred EEEEECC-CCcccEEEEccCCCCCCEEEEEECC---CCHHHhcCCC--------CCCCEEE--EECCEEC
Confidence 3444333 568999997532 23489999996 799999 598 3455433 5677665
No 123
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=73.40 E-value=3.1 Score=33.94 Aligned_cols=47 Identities=23% Similarity=0.465 Sum_probs=32.3
Q ss_pred Ccceeeeeeeccc--ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 308 DSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 308 dtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
...|||.|.-..+ .-++|++|.. ++||+++| | +.|-.++ .+.|++|.
T Consensus 30 ~~~lG~~i~gg~~~~~~~~V~~v~~---gspA~~aG~L--------~~GD~Il--~ing~~v~ 79 (125)
T 3hpk_A 30 QNLIGISIGGGAQYCPCLYIVQVFD---NTPAALDGTV--------AAGDEIT--GVNGRSIK 79 (125)
T ss_dssp TSCCCEEEEECSSCCSSEEEEEECT---TSHHHHHCCC--------CTTCEEE--EETTEECT
T ss_pred CCCcCEEEeccCCCCCCEEEEEeCC---CCHHHHCCCC--------CCCCEEE--EECCEECC
Confidence 4579999876543 3489999996 79999999 6 3444332 45666653
No 124
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=73.14 E-value=2.1 Score=33.32 Aligned_cols=52 Identities=23% Similarity=0.434 Sum_probs=34.0
Q ss_pred eeecCCCcceeeeeeeccc----c-----eEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 302 IKLKEGDSKLGFAISRTEE----G-----FIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRTEE----G-----FiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+.++.+...|||.|..... + -++|.+|.. ++||+++||+ .|-.++ .+.|++|
T Consensus 6 v~l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v 66 (99)
T 3khf_A 6 IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVED---GSPAQEAGLR--------AGDLIT--HINGESV 66 (99)
T ss_dssp EEEEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECT---TSHHHHHTCC--------TTCEEE--EETTEEC
T ss_pred EEEEeCCCCCcEEEEecccccCccccccCCeEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEEC
Confidence 4445567899999875432 1 247999985 7999999984 444333 4566654
No 125
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=72.12 E-value=8.5 Score=29.58 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=30.0
Q ss_pred cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 40 MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 40 m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
-+++||+|.+|. | ..+ ..-..+.+++.+... + +.+.+.|.|++.
T Consensus 36 Gl~~GD~I~~in-g------------~~v-----~~~~d~~~~~~~~~~-g-~~v~l~v~R~g~ 79 (87)
T 2i6v_A 36 GLQDGDMAVALN-G------------LDL-----TDPNVMNTLFQSMNE-M-TEMSLTVERDGQ 79 (87)
T ss_dssp TCCTTCEEEEET-T------------EET-----TCHHHHHHHHHTGGG-C-SEEEEEEEETTE
T ss_pred CCCCCCEEEEEC-C------------EEC-----CCHHHHHHHHHhcCC-C-CEEEEEEEECCE
Confidence 599999999885 2 223 223567777765532 3 478999999875
No 126
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=71.87 E-value=3.4 Score=31.41 Aligned_cols=53 Identities=8% Similarity=0.325 Sum_probs=36.0
Q ss_pred eeeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 298 LAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 298 ~~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+.+++.......+|||.+. .| ++|++|.. ++||+++| |+ .|-.++ .+.|++|-
T Consensus 4 ~~v~~~~~~~~~~~g~~~~---~g-v~V~~v~~---~s~A~~aG~l~--------~GD~I~--~ing~~v~ 57 (92)
T 3cyy_A 4 TKVTLVKSAKNEEYGLRLA---SH-IFVKEISQ---DSLAARDGNIQ--------EGDVVL--KINGTVTE 57 (92)
T ss_dssp EEEEEECSSTTSCCCEEEE---EE-EEEEEECT---TCHHHHSCCCC--------TTCEEE--EETTEECT
T ss_pred EEEEEEeCCCCCCCCEEEe---CC-EEEEEECC---CChHHhcCCCC--------CCCEEE--EECCEECC
Confidence 3444444445568898876 34 88999986 68999999 73 455443 67777764
No 127
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=71.75 E-value=2.5 Score=34.67 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=34.8
Q ss_pred eEeeecCCC-cceeeeeeecc-----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 300 IEIKLKEGD-SKLGFAISRTE-----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 300 lEi~~~~gd-tRlGfaIsRTE-----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.++.++.+. ..|||.|..-. +.-+||.+|.. +.||+++| | +.|-.++ .|.|++|
T Consensus 27 ~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~---~spA~~aG~L--------~~GD~Il--~ing~~v 87 (128)
T 2db5_A 27 EYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQP---GSVADRDQRL--------KENDQIL--AINHTPL 87 (128)
T ss_dssp EEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCT---TSHHHHTCCC--------CSSCBEE--EESSCBC
T ss_pred EEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEEC
Confidence 344444444 68999995421 12489999996 79999999 6 3454443 4666654
No 128
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=71.48 E-value=8 Score=29.51 Aligned_cols=41 Identities=20% Similarity=0.375 Sum_probs=27.6
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchh--hHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRS--GVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gks--gl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+++||+|.+|. | ..+ .... .+.+.|++ ....+.+.|+|++.
T Consensus 45 l~~GD~I~~in-g------------~~v-----~~~~~~~~~~~l~~----~g~~v~l~v~R~g~ 87 (91)
T 2pkt_A 45 LCIGDVITAID-G------------ENT-----SNMTHLEAQNRIKG----CTDNLTLTVARSEH 87 (91)
T ss_dssp CCTTCEEEEET-T------------EEC-----TTCCHHHHHHHHHT----CSSEEEEEEEEECC
T ss_pred CCCCCEEEEEC-C------------EEC-----CCCCHHHHHHHHHc----CCCeEEEEEEECCc
Confidence 99999999886 2 112 1112 56666665 33489999999876
No 129
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=71.12 E-value=3.3 Score=35.81 Aligned_cols=60 Identities=13% Similarity=0.203 Sum_probs=39.1
Q ss_pred cccceeeeEeeecCCCcceeeeeeecc-----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 293 PVGGELAIEIKLKEGDSKLGFAISRTE-----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 293 P~~~E~~lEi~~~~gdtRlGfaIsRTE-----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
....++.|+|.- +...|||.|.--. .| +||++|.. ++||.++| |+ .|-.++ .|.|++|
T Consensus 15 ~~~~~~~v~~~~--~~~~lG~~i~~g~~~~~~~g-~~V~~V~~---~spA~~aG~L~--------~GD~Il--~vng~~v 78 (206)
T 3r0h_A 15 KPNKKILIELKV--EKKPMGVIVCGGKNNHVTTG-CVITHVYP---EGQVAADKRLK--------IFDHIC--DINGTPI 78 (206)
T ss_dssp CTTSCEEEEEEC--TTSCCCEEEECCSSSSCCSC-EEEEEECT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred CCCCEEEEEEEe--CCCCcCEEEecccCCCCCCC-eEEEEECC---CChHHhcCCCC--------CCCEEE--EECCEEc
Confidence 344555566554 5689999996421 23 89999996 79999998 73 343332 4566666
Q ss_pred cc
Q 011319 367 LP 368 (488)
Q Consensus 367 lP 368 (488)
--
T Consensus 79 ~~ 80 (206)
T 3r0h_A 79 HV 80 (206)
T ss_dssp CG
T ss_pred CC
Confidence 44
No 130
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=70.81 E-value=1.8 Score=34.76 Aligned_cols=46 Identities=20% Similarity=0.402 Sum_probs=32.7
Q ss_pred Ccceeeeeeecc-----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 308 DSKLGFAISRTE-----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 308 dtRlGfaIsRTE-----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
...|||.|.... +.-+||.+|.. +.||.++| |+ .|-.++ .+.|++|
T Consensus 31 ~~~lG~~i~~~~~~~~~~~gv~V~~V~~---~spA~~aG~l~--------~GD~Il--~ing~~v 82 (117)
T 2o2t_A 31 SGGLGFSVVGLRSENRGELGIFVQEIQE---GSVAHRDGRLK--------ETDQIL--AINGQAL 82 (117)
T ss_dssp SSCSSCCEEEEECCC--CEEEEECCCCT---TSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred CCCCCEEEeecccCCCCCCCEEEEEECC---CCHHHHCCCCC--------CCCEEE--EECCEEC
Confidence 467999987432 23489999996 79999999 74 455443 5677665
No 131
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=70.59 E-value=3.3 Score=34.36 Aligned_cols=71 Identities=25% Similarity=0.389 Sum_probs=35.8
Q ss_pred ccccceeeEEEeeeccccceeeeEeeecCCCcceeeeeee-cc----------cceEEEEEeecCCCCCccchhh-HHHH
Q 011319 278 GVDLGVVRAVRLWYAPVGGELAIEIKLKEGDSKLGFAISR-TE----------EGFIYISTVIDDDENIPSTRSG-LSIL 345 (488)
Q Consensus 278 g~digVVravRLWy~P~~~E~~lEi~~~~gdtRlGfaIsR-TE----------EGFiyVsSV~~~~~g~~a~RsG-L~~L 345 (488)
|+|+.-.-.---|+.| ..+++.-. ....|||.|.- ++ +.-++|.+|.. ++||+++| |+
T Consensus 10 ~~~~~~~d~~s~~~~p----~~v~l~k~-~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~---~spA~~aG~L~-- 79 (123)
T 2iwq_A 10 GVDLGTENLYFQSMQP----RRVELWRE-PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLE---DSPAGKNGTLK-- 79 (123)
T ss_dssp -------------CCC----EEEEECCC-TTSCCSEEEEECC---------CCCCSEEEEEECS---SSHHHHHCCCC--
T ss_pred ccccccccCCcccCCC----EEEEEEec-CCCCccEEEEeccCccccccccCCCCCEEEEEECC---CChHHHcCCCC--
Confidence 5666555555556666 22333322 23578988853 11 12389999996 79999999 83
Q ss_pred HHHHHhcCcEEEEEeecCeee
Q 011319 346 YKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 346 y~~A~~a~kLLVISRv~g~kV 366 (488)
.|-.++ .|.|++|
T Consensus 80 ------~GD~Il--~Vng~~v 92 (123)
T 2iwq_A 80 ------PGDRIV--EVDGMDL 92 (123)
T ss_dssp ------TTCEEE--EETTEEC
T ss_pred ------CCCEEE--EECCEEC
Confidence 455443 4677655
No 132
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=70.42 E-value=3.4 Score=32.21 Aligned_cols=45 Identities=24% Similarity=0.464 Sum_probs=30.4
Q ss_pred cceeeeeeeccc-----------ceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 309 SKLGFAISRTEE-----------GFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 309 tRlGfaIsRTEE-----------GFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
..|||.+.-..+ .-++|.+|.. ++||.++| |+ .|-.++ .+.|++|
T Consensus 16 ~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~---~spA~~aG~l~--------~GD~I~--~ing~~v 72 (103)
T 2fcf_A 16 KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLE---DSPAGKNGTLK--------PGDRIV--EVDGMDL 72 (103)
T ss_dssp CCCCEEEECCCC-------------EEEEEECS---SSHHHHHCCCC--------TTCEEE--EETTEEC
T ss_pred CceeEEEEccCCCCcccccCCCCCCEEEEEeCC---CCcHHHcCCCC--------CCCEEE--EECCEEC
Confidence 568888764321 3489999996 79999999 73 454433 5777765
No 133
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=70.29 E-value=3.3 Score=41.17 Aligned_cols=31 Identities=19% Similarity=0.552 Sum_probs=26.8
Q ss_pred ceeeeeeecccceEEEEEeecCCCCCccchhhHH
Q 011319 310 KLGFAISRTEEGFIYISTVIDDDENIPSTRSGLS 343 (488)
Q Consensus 310 RlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~ 343 (488)
-|||.|..-+++-|+|++|.. |+||+++||+
T Consensus 20 ~lG~~i~gg~~~gi~V~~V~~---gspA~~aGL~ 50 (391)
T 3tsz_A 20 SVGLRLAGGNDVGIFVAGVLE---DSPAAKEGLE 50 (391)
T ss_dssp SCCEEEEEETTTEEEEEEECT---TCHHHHTTCC
T ss_pred ceeEEEEecCCCCEEEEEECC---CCHHHHcCCC
Confidence 499999886778899999996 7999999973
No 134
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.26 E-value=3.4 Score=32.35 Aligned_cols=56 Identities=18% Similarity=0.349 Sum_probs=37.4
Q ss_pred eeEeeecCC-Ccceeeeeeecc--cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 299 AIEIKLKEG-DSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 299 ~lEi~~~~g-dtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
..++.++.+ ...|||.+.... +.-++|.+|.. ++||.++||+ .|-.++ .+.|++|.
T Consensus 11 ~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v~ 69 (100)
T 2eeh_A 11 IHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEE---GSSAERAGLC--------VGDKIT--EVNGLSLE 69 (100)
T ss_dssp ECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECT---TSHHHHHTCC--------SSCEEE--EETTEECS
T ss_pred EEEEEEEECCCCCccEEEEccccCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 344444433 346999997653 23489999986 7999999984 455443 67777664
No 135
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=69.90 E-value=3.8 Score=32.97 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=42.3
Q ss_pred Ccceeeeeeecc-----------cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceeeecCC
Q 011319 308 DSKLGFAISRTE-----------EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTG 375 (488)
Q Consensus 308 dtRlGfaIsRTE-----------EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsG 375 (488)
...|||.|..-- +.-+||++|.. +.||+++| |+ .|-.++ .|.|++|.
T Consensus 26 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~---~spA~~aG~L~--------~GD~Il--~vng~~v~-------- 84 (117)
T 2ehr_A 26 NVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLE---DSPAGKTNALK--------TGDKIL--EVSGVDLQ-------- 84 (117)
T ss_dssp SSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECS---SSTTTSSCSCC--------TTCEEE--EESSCBCT--------
T ss_pred CCccCEEEeCCcccccccccCCCcCCEEEEEeCC---CChHHHcCCCC--------CCCEEE--EECCEECC--------
Confidence 467999986432 23589999996 79999999 73 444433 45665542
Q ss_pred ceeccCcccccccccccccccCceEEEEE
Q 011319 376 AVRCFDTVSLSQKLSLHRHAKVPILLHVF 404 (488)
Q Consensus 376 aIrC~Dt~slsqkLslhr~a~~pI~lHvm 404 (488)
+....+.+.+-+....+|.|.|.
T Consensus 85 ------~~~~~~~~~~~~~~g~~v~l~v~ 107 (117)
T 2ehr_A 85 ------NASHSEAVEAIKNAGNPVVFIVQ 107 (117)
T ss_dssp ------TCCHHHHHHHHHTSCSSEEEEEC
T ss_pred ------CCCHHHHHHHHHcCCCeEEEEEE
Confidence 11222333333445677777664
No 136
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=69.53 E-value=2.2 Score=34.10 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=29.0
Q ss_pred eeeEeeecCCCcceeeeeeecc-----------cceEEEEEeecCCCCCccchhh-HH
Q 011319 298 LAIEIKLKEGDSKLGFAISRTE-----------EGFIYISTVIDDDENIPSTRSG-LS 343 (488)
Q Consensus 298 ~~lEi~~~~gdtRlGfaIsRTE-----------EGFiyVsSV~~~~~g~~a~RsG-L~ 343 (488)
..|+|.-.+ ...|||.|..-. +.-+||.+|.. +.||+++| |+
T Consensus 11 ~~v~l~k~~-~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~---~spA~~aG~L~ 64 (111)
T 1uju_A 11 RELCIQKAP-GERLGISIRGGARGHAGNPRDPTDEGIFISKVSP---TGAAGRDGRLR 64 (111)
T ss_dssp SCEEEECCT-TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECT---TSHHHHHSSCC
T ss_pred EEEEEEECC-CCccCEEEECCccccccccccCCCCCEEEEEECC---CCHHHHcCCCC
Confidence 344444332 478999998532 22379999996 79999999 74
No 137
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=69.51 E-value=7.4 Score=31.86 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=24.2
Q ss_pred Ccceeeeeeecc----cceEEEEEeecCCCCCccchhh-H
Q 011319 308 DSKLGFAISRTE----EGFIYISTVIDDDENIPSTRSG-L 342 (488)
Q Consensus 308 dtRlGfaIsRTE----EGFiyVsSV~~~~~g~~a~RsG-L 342 (488)
...|||.+.... .+-++|.+|.. ++||.++| |
T Consensus 31 ~~~lG~~~~~~~~~~~~~gv~V~~V~~---~spA~~aG~l 67 (124)
T 1wh1_A 31 QDKLGLTVCYRTDDEDDIGIYISEIDP---NSIAAKDGRI 67 (124)
T ss_dssp TCCCCEEEECCCCCSSCCCEEEEEECS---SSHHHHTCCC
T ss_pred CCcccEEEEecCCCCCCCCEEEEEECC---CCHHHHcCCC
Confidence 346788776544 25689999985 79999999 6
No 138
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=69.36 E-value=3.2 Score=34.20 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=35.6
Q ss_pred eccccceeeeEeeecCCCcceeeeeeecc-----cceEEEEEeecCCCCCccchh-hHHHHHHHHHhcCcEEEEEeecCe
Q 011319 291 YAPVGGELAIEIKLKEGDSKLGFAISRTE-----EGFIYISTVIDDDENIPSTRS-GLSILYKEAVSASKLLVVSRVSNQ 364 (488)
Q Consensus 291 y~P~~~E~~lEi~~~~gdtRlGfaIsRTE-----EGFiyVsSV~~~~~g~~a~Rs-GL~~Ly~~A~~a~kLLVISRv~g~ 364 (488)
|.+......|+|.-.+ ...|||.|..-. +.-+||++|.. +.||+++ || +.|-.++ .|.|+
T Consensus 19 ~s~~~~~~~v~l~k~~-~~~lGf~i~gg~~~~~~~~~~~V~~V~~---~spA~~aggL--------~~GD~Il--~VnG~ 84 (120)
T 2iwo_A 19 YFQSMGLRTVEMKKGP-TDSLGISIAGGVGSPLGDVPIFIAMMHP---TGVAAQTQKL--------RVGDRIV--TICGT 84 (120)
T ss_dssp ------CEEEEEEC-----CCCEEEEEEEEETTEEEEEEEEEECT---TSHHHHHTCC--------CTTCEEE--EETTE
T ss_pred CCCCCCcEEEEEEcCC-CCCCCEEEecccCCCCCCCCEEEEEECC---CCHHHHhCCC--------CCCCEEE--EECCE
Confidence 4444444445544322 248999998643 23589999996 7999999 87 3454433 46776
Q ss_pred eec
Q 011319 365 KVL 367 (488)
Q Consensus 365 kVl 367 (488)
+|.
T Consensus 85 ~v~ 87 (120)
T 2iwo_A 85 STE 87 (120)
T ss_dssp ECT
T ss_pred ECC
Confidence 553
No 139
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=69.27 E-value=7.4 Score=30.78 Aligned_cols=43 Identities=14% Similarity=0.351 Sum_probs=28.2
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+++||+|.+|. |.. + ..-..+.+.|.+. + ....|.+.|.|++.
T Consensus 18 L~~GD~I~~In-G~~------------v-----~~~~~l~~~l~~~-~-~g~~v~l~v~R~g~ 60 (91)
T 2kjp_A 18 IEVGDKIISAD-GKN------------Y-----QSAEKLIDYISSK-K-AGDKVTLKIEREEK 60 (91)
T ss_dssp CCSSCEEEEET-TBC------------C-----SSHHHHHHHHSSC-C-SSCEECEEEESSSC
T ss_pred CCCCCEEEEEC-CEE------------C-----CCHHHHHHHHHcC-C-CCCEEEEEEEECCE
Confidence 99999999886 211 2 1124566666543 1 23489999999875
No 140
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=69.22 E-value=4.5 Score=29.70 Aligned_cols=46 Identities=9% Similarity=0.386 Sum_probs=32.1
Q ss_pred cCCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 305 KEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 305 ~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.....+|||.+. +=++|.+|.. ++||.++| |+ .|-.++ .+.|++|-
T Consensus 9 ~~~~~~~g~~~~----~gv~V~~v~~---~s~A~~aG~l~--------~GD~I~--~ing~~v~ 55 (81)
T 2rcz_A 9 SRKNEEYGLRLA----SHIFVKEISQ---DSLAARDGNIQ--------EGDVVL--KINGTVTE 55 (81)
T ss_dssp CSTTCCCCEEEE----EEEEEEEECT---TSHHHHHSSCC--------TTCEEE--EETTEECT
T ss_pred CCCCCCCCEEEe----CCEEEEEECC---CChHHHCCCCC--------CCCEEE--EECCEECC
Confidence 334568898876 3488999986 68999999 74 454433 57777663
No 141
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.12 E-value=2.8 Score=32.68 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=33.7
Q ss_pred CCCcceeeeeeecccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeee
Q 011319 306 EGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 306 ~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.....|||.|.-. ++-++|++|.. ++||+++| | +.|-.++ .+.|++|
T Consensus 15 ~~~~~lG~~i~~~-~~~v~V~~V~~---~spA~~ag~L--------~~GD~I~--~ing~~v 62 (91)
T 2e7k_A 15 TAGEHLGVTFRVE-GGELVIARILH---GGMVAQQGLL--------HVGDIIK--EVNGQPV 62 (91)
T ss_dssp CTTCCCCEEEEES-SSSEEEEEECS---SSHHHHHCCC--------CTTCEEE--EETTEEC
T ss_pred CCCCcEeEEEEec-CCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEEC
Confidence 3457899999874 45578999996 79999987 7 3454443 4666666
No 142
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=67.37 E-value=9.4 Score=31.08 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=29.8
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCc--hhhHHHHHhhhhcCccceEEEEEecCccc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNG--RSGVQKILHGSFKNKETSILVRVRRGAEE 104 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~g--ksgl~k~L~k~~k~~e~si~vrVrRG~~~ 104 (488)
.+.+++||+|.+|. | ..+ .+ -..+.++|++. ....+.+.|+|++.+
T Consensus 49 aGll~~GD~I~~in-g------------~~v-----~~~~~~~~~~~l~~~---~g~~v~l~v~R~g~~ 96 (127)
T 1b8q_A 49 SGLIQAGDIILAVN-D------------RPL-----VDLSYDSALEVLRGI---ASETHVVLILRGPEG 96 (127)
T ss_dssp HSSCCTTTCCCEET-T------------EEC-----SSSCHHHHHHHHHSC---CSSCEEEEEECCCCS
T ss_pred cCCCCCCCEEEEEC-C------------EEC-----CCCCHHHHHHHHHhC---CCCeEEEEEEeCCce
Confidence 34559999998875 1 122 11 35666666652 334899999998863
No 143
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=66.29 E-value=4 Score=32.81 Aligned_cols=71 Identities=21% Similarity=0.412 Sum_probs=44.5
Q ss_pred CCcceeeeeeec----ccce-----EEEEEeecCCCCCccch-hhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCc
Q 011319 307 GDSKLGFAISRT----EEGF-----IYISTVIDDDENIPSTR-SGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGA 376 (488)
Q Consensus 307 gdtRlGfaIsRT----EEGF-----iyVsSV~~~~~g~~a~R-sGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGa 376 (488)
+...|||.|... +.|. ++|.+|.. ++||++ +|| +.|-.++ .+.|++|--+
T Consensus 20 ~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~---~spA~~~agL--------~~GD~I~--~ing~~v~~~------- 79 (114)
T 1uew_A 20 ENEGFGFVIISSLNRPESGSTITVPHKIGRIID---GSPADRCAKL--------KVGDRIL--AVNGQSIINM------- 79 (114)
T ss_dssp TTSCCCEEEECCCCSCCSSCCSCCSCEEEEECT---TCTTGGGSSC--------CTTCBEE--EETTBCTTTS-------
T ss_pred CCCCCCEEEEeecccCCCCcccccCeEEEEECC---CChHHHhCCC--------CCCCEEE--EECCEECCCC-------
Confidence 456899999643 3454 49999996 799999 999 4555544 4667655221
Q ss_pred eeccCcccccccccccccccCceEEEEE
Q 011319 377 VRCFDTVSLSQKLSLHRHAKVPILLHVF 404 (488)
Q Consensus 377 IrC~Dt~slsqkLslhr~a~~pI~lHvm 404 (488)
.+..+.+.|. ....+|.|.|.
T Consensus 80 ----~~~~~~~~l~---~~g~~v~l~v~ 100 (114)
T 1uew_A 80 ----PHADIVKLIK---DAGLSVTLRII 100 (114)
T ss_dssp ----CHHHHHHHHH---HTTTEEEEEEC
T ss_pred ----CHHHHHHHHH---cCCCeEEEEEE
Confidence 1233444443 25667776664
No 144
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.95 E-value=2.1 Score=33.17 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=36.3
Q ss_pred eEeeecCCCcceeeeeeecc--cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 300 IEIKLKEGDSKLGFAISRTE--EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.++.++ +...|||.|..-. +.-++|..|.. ++||.++||+ .|-.++ .+.|++|-
T Consensus 10 ~~v~l~-~~~~~G~~l~gg~~~~~~v~V~~V~~---~spA~~aGl~--------~GD~I~--~ing~~v~ 65 (94)
T 2eeg_A 10 HSVTLR-GPSPWGFRLVGGRDFSAPLTISRVHA---GSKAALAALC--------PGDLIQ--AINGESTE 65 (94)
T ss_dssp EEEEEC-CSSCCSCCEECCTTTTSCCEECCCCS---SSHHHHTTCC--------TTCEEE--EETTEETT
T ss_pred EEEEEe-CCCccCEEEECccCCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 344443 4568999997522 33478999985 7999999985 455443 67777654
No 145
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=65.83 E-value=2.7 Score=34.73 Aligned_cols=54 Identities=9% Similarity=0.181 Sum_probs=38.1
Q ss_pred EeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecce
Q 011319 301 EIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPW 369 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPw 369 (488)
.+.++.++..|||.+. -..| ++|.+|.. ++||.++||+ .|-.+ =.+.|++|--|
T Consensus 26 ~v~l~k~~~~~G~~l~-~~~~-v~V~~V~~---gspA~~AGL~--------~GD~I--l~VnG~~v~~~ 79 (109)
T 2vsv_A 26 SIRFTAEEGDLGFTLR-GNAP-VQVHFLDP---YCSASVAGAR--------EGDYI--VSIQLVDCKWL 79 (109)
T ss_dssp EEEECCGGGCCCEEEE-SSSS-CEEEEECT---TSHHHHTTCC--------TTCEE--EEETTEECTTC
T ss_pred EEEEEeCCCceeEEEe-CCCC-eEEEEECC---CCHHHHcCCC--------CCCEE--EEECCEECCCC
Confidence 4555667889999883 2334 68999985 7899999985 45543 36788876543
No 146
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=64.94 E-value=3.4 Score=32.48 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=45.0
Q ss_pred eEeeecCCCcceeeeeeeccc-ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCcee
Q 011319 300 IEIKLKEGDSKLGFAISRTEE-GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVR 378 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTEE-GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIr 378 (488)
++|.-.+ ...+||.|.-... +-++|.+|.. ++||+++||+ .|-.+ =.+.|++|-
T Consensus 5 v~l~~~~-~~~~G~~l~~~~~~~g~~V~~V~~---~spA~~aGl~--------~GD~I--~~ing~~v~----------- 59 (106)
T 3ngh_A 5 SKLSKQE-GQNYGFFLRIEKDTDGHLIRVIEE---GSPAEKAGLL--------DGDRV--LRINGVFVD----------- 59 (106)
T ss_dssp EEEECCT-TCCCCCEEECCTTCCSCEEECCCT---TSHHHHTTCC--------TTCEE--EEETTEECT-----------
T ss_pred EEEEeCC-CCeeCEEEEEEeCCCCEEEEEeCC---CCHHHHcCCC--------CCCEE--EEECCEECC-----------
Confidence 4444443 3578888875433 2367999985 7999999984 44443 245666543
Q ss_pred ccCcccccccccccccccCceEEEEE
Q 011319 379 CFDTVSLSQKLSLHRHAKVPILLHVF 404 (488)
Q Consensus 379 C~Dt~slsqkLslhr~a~~pI~lHvm 404 (488)
.+++..+.+.|. ....++.|.|.
T Consensus 60 ~~~~~~~~~~l~---~~g~~v~l~v~ 82 (106)
T 3ngh_A 60 KEEHAQVVELVR---KSGNSVTLLVL 82 (106)
T ss_dssp TSCHHHHHHHHH---HTTTEEEEEEE
T ss_pred CCCHHHHHHHHH---hCCCEEEEEEE
Confidence 233333444333 44566666654
No 147
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=64.79 E-value=4.2 Score=32.66 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=47.6
Q ss_pred eeEeeecCCCcceeeeeeec-ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCce
Q 011319 299 AIEIKLKEGDSKLGFAISRT-EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAV 377 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRT-EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaI 377 (488)
.+.|.+++ ...|||.|.-. ++.-++|.+|.. ++||+++||+ .|-.++ .+.|++|-
T Consensus 16 ~~~l~~~~-~~~~G~~l~~~~~~~g~~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v~---------- 71 (114)
T 2edz_A 16 ECKLSKQE-GQNYGFFLRIEKDTDGHLIRVIEE---GSPAEKAGLL--------DGDRVL--RINGVFVD---------- 71 (114)
T ss_dssp EEEEECCT-TCCCSCEEECCTTCCSCEEECCCT---TCTTGGGTCC--------TTCEEE--EESSSBCS----------
T ss_pred EEEEeCCC-CCcccEEEEEecCCCCeEEEEeCC---CChHHHcCCC--------CCCEEE--EECCEECC----------
Confidence 34444444 34688888653 233468999985 7999999984 455544 67777653
Q ss_pred eccCcccccccccccccccCceEEEEEE
Q 011319 378 RCFDTVSLSQKLSLHRHAKVPILLHVFL 405 (488)
Q Consensus 378 rC~Dt~slsqkLslhr~a~~pI~lHvm~ 405 (488)
.+++..+.+.|. ....+|.|.|.-
T Consensus 72 -~~~~~~~~~~l~---~~g~~v~l~v~R 95 (114)
T 2edz_A 72 -KEEHAQVVELVR---KSGNSVTLLVLD 95 (114)
T ss_dssp -SSCHHHHHHHHH---HTCSEEEEEEEC
T ss_pred -CCCHHHHHHHHH---cCCCEEEEEEEE
Confidence 223334444442 236677776653
No 148
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=64.53 E-value=7.1 Score=30.74 Aligned_cols=53 Identities=23% Similarity=0.487 Sum_probs=36.7
Q ss_pred eeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 299 AIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.+++.++.+...|||.|.-...| ++|.+|.+ ++.++||+ .|-.++ .+.|++|-
T Consensus 11 ~~~v~l~~~~~g~G~~i~~~~~G-v~V~~v~~-----~a~~aGL~--------~GD~I~--~vng~~v~ 63 (96)
T 1ujv_A 11 LMTLTIVKGAQGFGFTIADSPTG-QRVKQILD-----IQGCPGLC--------EGDLIV--EINQQNVQ 63 (96)
T ss_dssp CEEEEEECCSSSSSEEEEEETTE-EEEEEESC-----GGGSTTCC--------SSCEEE--EETTEECS
T ss_pred EEEEEEEeCCCceeEEEEcCCCC-EEEEEEec-----ccccCCCC--------CCCEEE--EECCEECC
Confidence 45566666778999999654444 89999985 25688874 565544 66777653
No 149
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=63.64 E-value=14 Score=29.38 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=30.0
Q ss_pred cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 40 MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 40 m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
-+++||+|.+|. | ..+ ..-..+.+++.+... ++ .+.+.|.|++.
T Consensus 54 Gl~~GDvI~~in-g------------~~v-----~~~~d~~~~~~~~~~-g~-~v~l~v~R~g~ 97 (105)
T 2i4s_A 54 GLQDGDMAVALN-G------------LDL-----TDPNVMNTLFQSMNE-MT-EMSLTVERDGQ 97 (105)
T ss_dssp TCCTTCEEEEET-T------------EET-----TSTTHHHHHHHHHTT-CS-EEEEEEEETTE
T ss_pred CCCCCCEEEEEC-C------------EEC-----CCHHHHHHHHHhcCC-CC-eEEEEEEECCE
Confidence 599999999886 2 222 222567777766533 33 79999999875
No 150
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.56 E-value=2.5 Score=33.24 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=48.2
Q ss_pred ceeeeEeeecCCC--cceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeec
Q 011319 296 GELAIEIKLKEGD--SKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSS 373 (488)
Q Consensus 296 ~E~~lEi~~~~gd--tRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsS 373 (488)
.-++.++.++.+. ..|||.|.. +.-++|.+|.. +.||+ +||+ .|-.++ .+.|++|.-
T Consensus 6 ~~~~~~v~l~~~~~~~~~G~~l~~--~~~~~V~~V~~---~spA~-agL~--------~GD~Il--~ing~~v~~----- 64 (96)
T 2edv_A 6 SGVRHTVKIDKDTLLQDYGFHISE--SLPLTVVAVTA---GGSAH-GKLF--------PGDQIL--QMNNEPAED----- 64 (96)
T ss_dssp SCEEEEEEECCCSSSCSCSBCCCS--SSSCBCCCBCS---SSSST-TTSC--------TTCBEE--EESSCBSTT-----
T ss_pred CCccEEEEEEECCCCCcccEEEec--CCCeEEEEECC---CCchh-hCCC--------CCCEEE--EECCEECCC-----
Confidence 3344555555444 679999976 44578999986 67885 9985 455444 566665431
Q ss_pred CCceeccCcccccccccccccccCceEEEEEE
Q 011319 374 TGAVRCFDTVSLSQKLSLHRHAKVPILLHVFL 405 (488)
Q Consensus 374 sGaIrC~Dt~slsqkLslhr~a~~pI~lHvm~ 405 (488)
. +..+.+.+-+....+|.|.|+=
T Consensus 65 ------~---~~~~~~~~~~~~g~~v~l~v~R 87 (96)
T 2edv_A 65 ------L---SWERAVDILREAEDSLSITVVR 87 (96)
T ss_dssp ------C---CHHHHHHHHHHCSSCEEEEEEE
T ss_pred ------C---CHHHHHHHHHcCCCeEEEEEEE
Confidence 1 2223333334467788887753
No 151
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=63.34 E-value=7.5 Score=30.82 Aligned_cols=48 Identities=27% Similarity=0.413 Sum_probs=32.9
Q ss_pred CCCcceeeeeeeccc--ceEEEEEeecCCCCCccchh-hHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 306 EGDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRS-GLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 306 ~gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~Rs-GL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.+...|||.|..-.+ .-++|++|.. ++||+++ || +.|-.++ .+.|++|
T Consensus 18 ~~~~~lG~~l~~g~~~~~~~~V~~V~~---~s~A~~a~gL--------~~GD~Il--~Ing~~v 68 (103)
T 2dc2_A 18 EDHEGLGISITGGKEHGVPILISEIHP---GQPADRCGGL--------HVGDAIL--AVNGVNL 68 (103)
T ss_dssp CSSSCCCEEEEEEGGGTEEEEEEEECT---TSHHHHHTCC--------CSSEEEE--EETTEES
T ss_pred CCCCccCEEEEeccCCCCCEEEEEECC---CCHHHHhCCC--------CCCCEEE--EECCEEC
Confidence 445789999985422 2589999996 7999995 88 3444333 4666655
No 152
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.16 E-value=2.7 Score=33.11 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=37.5
Q ss_pred EeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.+.++.+...|||.|.-.+ +.=+||.+|.. ++||+++||+ .|-.++ .+.|++|.
T Consensus 11 ~v~l~k~~~~~G~~l~~~~~~~g~~V~~V~~---~spA~~aGl~--------~GD~I~--~vng~~v~ 65 (106)
T 2eei_A 11 LCYLVKEGGSYGFSLKTVQGKKGVYMTDITP---QGVAMRAGVL--------ADDHLI--EVNGENVE 65 (106)
T ss_dssp EEEEECCSSSCSCCEECCSSCCSCEECCCCT---TSHHHHHTCC--------SSEEEE--EETTEECT
T ss_pred EEEEEECCCCCCEEEEeccCCCCEEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 3445556788999996432 23468999985 7999999974 565443 77777764
No 153
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=61.52 E-value=1.6 Score=34.40 Aligned_cols=51 Identities=22% Similarity=0.437 Sum_probs=35.7
Q ss_pred eeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 302 IKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+.++.+...|||.+... .| ++|.+|.. ++||.++||+ .|-.++ .+.|++|.
T Consensus 19 v~l~~~~~g~G~~~~~~-~~-~~V~~V~~---~spA~~aGL~--------~GD~I~--~vng~~v~ 69 (100)
T 1whd_A 19 ITIRRGKDGFGFTICCD-SP-VRVQAVDS---GGPAERAGLQ--------QLDTVL--QLNERPVE 69 (100)
T ss_dssp EEEECCSSSSSCBCCCS-SS-CBCCBCCT---TSHHHHHTCC--------SSCEEE--EETTEECT
T ss_pred EEEECCCCeeeEEEeCC-CC-EEEEEECC---CCHHHHcCCC--------CCCEEE--EECCEECC
Confidence 33444556789888654 44 78888885 7999999984 565544 77787764
No 154
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=61.35 E-value=5.9 Score=33.66 Aligned_cols=55 Identities=24% Similarity=0.550 Sum_probs=38.2
Q ss_pred EeeecCC-CcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecce
Q 011319 301 EIKLKEG-DSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPW 369 (488)
Q Consensus 301 Ei~~~~g-dtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPw 369 (488)
++.++.+ ...|||.+.-.+.| ++|++|.. ++||+++||+ .|-.++ .+.|++|--|
T Consensus 7 ~v~l~k~~~~~lG~~~~~~~~g-~~V~~v~~---~spA~~aGl~--------~GD~I~--~ing~~v~~~ 62 (166)
T 1w9e_A 7 EVILCKDQDGKIGLRLKSIDNG-IFVQLVQA---NSPASLVGLR--------FGDQVL--QINGENCAGW 62 (166)
T ss_dssp EEEEECCTTSCCSEEEEEETTE-EEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEECTTC
T ss_pred EEEEEeCCCCcEeEEEEeCCCC-EEEEEECC---CChHHHcCCC--------CCCEEE--EECCEECCCC
Confidence 4455443 35799999875544 89999985 7899999984 455443 6677776543
No 155
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=60.67 E-value=7.9 Score=30.41 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=37.2
Q ss_pred eEeeecCC-Ccceeeeeeecc--------cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecc
Q 011319 300 IEIKLKEG-DSKLGFAISRTE--------EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLP 368 (488)
Q Consensus 300 lEi~~~~g-dtRlGfaIsRTE--------EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlP 368 (488)
.++.++.+ ...|||.|..-. +.-++|.+|.. ++||+ +|| +.|-.++ .+.|++|.-
T Consensus 9 ~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~---~spA~-agl--------~~GD~I~--~vng~~v~~ 72 (107)
T 2h2b_A 9 HTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLK---GGPAE-GQL--------QENDRVA--MVNGVSMDN 72 (107)
T ss_dssp EEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECT---TSTTB-TTB--------CTTCEEE--EETTEECTT
T ss_pred EEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECC---CCchh-hCC--------CCCCEEE--EECCEECCC
Confidence 44555554 378999997422 34589999996 68888 898 4455544 678887743
No 156
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=59.37 E-value=5.3 Score=34.66 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=41.8
Q ss_pred cceeeeEeeecCCCcceeeeeee--cccceEEEEEeecCCCCCccchh-hHHHHHHHHHhcCcEEEEEeecCeeecce
Q 011319 295 GGELAIEIKLKEGDSKLGFAISR--TEEGFIYISTVIDDDENIPSTRS-GLSILYKEAVSASKLLVVSRVSNQKVLPW 369 (488)
Q Consensus 295 ~~E~~lEi~~~~gdtRlGfaIsR--TEEGFiyVsSV~~~~~g~~a~Rs-GL~~Ly~~A~~a~kLLVISRv~g~kVlPw 369 (488)
.|+..++|..++ ...|||.|.- .+.+-+||+.|.. ++||.++ ||+ .|-.++ .+.|++|.-|
T Consensus 6 ~~~~~v~l~~~~-~~~lG~~i~~~~~~~~~~~V~~v~~---~spA~~aggl~--------~GD~I~--~vng~~v~~~ 69 (200)
T 2qt5_A 6 KGSTVVELMKKE-GTTLGLTVSGGIDKDGKPRVSNLRQ---GGIAARSDQLD--------VGDYIK--AVNGINLAKF 69 (200)
T ss_dssp EEEEEEEEECCT-TCCCCEEEECCTTSSSCSEEEEECT---TSHHHHTTSCC--------TTCEEE--EETTEECTTS
T ss_pred CCCEEEEEEeCC-CCCCCEEEecccCCCCCeEEEEECC---CChHHhcCCCC--------CCCEEE--EECCEECCCC
Confidence 456667776554 6789999974 2334589999996 6899999 773 455443 5677766544
No 157
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=59.17 E-value=7.9 Score=29.95 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=28.7
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCccc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEE 104 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~ 104 (488)
|++||+|.+|. | ..+.. ..-..+.+.|++. ..+.+.+.|.|+..+
T Consensus 51 l~~GD~I~~in-g------------~~v~~---~~~~~~~~~l~~~---~~~~~~l~v~R~g~~ 95 (98)
T 2jxo_A 51 LRAQDRIVEVN-G------------VCMEG---KQHGDVVSAIRAG---GDETKLLVVDRETDE 95 (98)
T ss_dssp CCTTCEEEEET-T------------EECTT---CCHHHHHHHHHTT---TTEEEEEECCHHHHH
T ss_pred CCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHhC---CCcEEEEEEECCchh
Confidence 99999999886 2 12200 0135677777765 334677889887653
No 158
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=58.98 E-value=4.4 Score=31.96 Aligned_cols=47 Identities=13% Similarity=0.268 Sum_probs=34.1
Q ss_pred CCcceeeeeeeccc--ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 307 GDSKLGFAISRTEE--GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 307 gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+...|||.|....+ .-++|.+|.. ++||.++|| +.|-.++ .+.|++|
T Consensus 13 ~~~~lG~~l~~g~~~~~~~~V~~V~~---~spA~~aGL--------~~GD~I~--~ing~~v 61 (103)
T 1v5l_A 13 GPAPWGFRLSGGIDFNQPLVITRITP---GSKAAAANL--------CPGDVIL--AIDGFGT 61 (103)
T ss_dssp SSSCCSBCCEEETTTTEEEECSCBCT---TSTTGGGTC--------CTTCBEE--EETTEEC
T ss_pred CCCCcCEEEeccccCCCCeEEEEECC---CCHHHHcCC--------CCCCEEE--EECCEEC
Confidence 45689999975532 3688999985 799999998 4555443 5777765
No 159
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=58.77 E-value=2.1 Score=33.84 Aligned_cols=54 Identities=28% Similarity=0.435 Sum_probs=36.7
Q ss_pred EeeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
++.++.+...|||.|.... +.-++|..|.. +.||.++| | +.|-.++ .|.|++|.
T Consensus 18 ~v~l~k~~~glG~~l~~~~~~~gv~V~~V~~---~s~A~~aG~L--------~~GD~Il--~Vng~~v~ 73 (113)
T 1um7_A 18 KIILHKGSTGLGFNIVGGEDGEGIFVSFILA---GGPADLSGEL--------RRGDRIL--SVNGVNLR 73 (113)
T ss_dssp EEEEECCSSCSSBCCBCCSTTCCCBCCCBCS---SSHHHHTTCC--------CTTCEEE--EESSCBCT
T ss_pred EEEEEECCCcccEEEEeccCCCCEEEEEECC---CCHHHHcCCC--------CCCCEEE--EECCEECC
Confidence 3444445567999997665 35578888885 68999999 7 3455433 57777764
No 160
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=58.65 E-value=12 Score=29.40 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=29.8
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCc--hhhHHHHHhhhhcCccceEEEEEecCccc
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNG--RSGVQKILHGSFKNKETSILVRVRRGAEE 104 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~g--ksgl~k~L~k~~k~~e~si~vrVrRG~~~ 104 (488)
.-|++||+|.+|. + ..+ .. -..+.++|++. ...|.+.|+|+..+
T Consensus 45 aGL~~GD~I~~in-g------------~~v-----~~~~~~~~~~~l~~~----g~~v~l~v~R~g~~ 90 (103)
T 1v5l_A 45 ANLCPGDVILAID-G------------FGT-----ESMTHADAQDRIKAA----SYQLCLKIDRAETR 90 (103)
T ss_dssp GTCCTTCBEEEET-T------------EEC-----SSCCHHHHHHHHTTC----CSEEECEECCCTTT
T ss_pred cCCCCCCEEEEEC-C------------EEC-----CCCCHHHHHHHHHhC----CCeEEEEEEECCeE
Confidence 3499999999886 2 122 11 35666666654 34899999998863
No 161
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=58.29 E-value=16 Score=28.95 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=33.9
Q ss_pred EEEEEEccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEec
Q 011319 21 VLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRR 100 (488)
Q Consensus 21 V~~i~Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrR 100 (488)
|+......++.++. .-+++||+|.+|. | ..+. .-..+.+.|.+ + ..+.+.|.|
T Consensus 37 v~V~~V~~~spA~~----aGl~~GD~I~~in-g------------~~v~-----~~~~~~~~l~~----~-~~v~l~v~R 89 (113)
T 2pzd_A 37 VLIHKVILGSPAHR----AGLRPGDVILAIG-E------------QMVQ-----NAEDVYEAVRT----Q-SQLAVQIRR 89 (113)
T ss_dssp EEEEEEBTTSHHHH----HTCCTTCEEEEET-T------------EECC-----SHHHHHHHHHH----C-SSEEEEEEE
T ss_pred eEEEEeCCCChHHH----cCCCCCCEEEEEC-C------------EECC-----CHHHHHHHHhC----C-CeEEEEEEE
Confidence 44444344544332 3499999999886 1 2221 12456666654 3 489999999
Q ss_pred Ccc
Q 011319 101 GAE 103 (488)
Q Consensus 101 G~~ 103 (488)
++.
T Consensus 90 ~g~ 92 (113)
T 2pzd_A 90 GRE 92 (113)
T ss_dssp TTE
T ss_pred CCE
Confidence 875
No 162
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=58.17 E-value=51 Score=25.94 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=29.9
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCccc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEE 104 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~ 104 (488)
.+.+++||+|.+|. | ..+.. ..-..+.+.|++. ....+.+.|.|++.+
T Consensus 42 aGll~~GD~I~~in-g------------~~v~~---~~~~~~~~~l~~~---~g~~v~l~v~R~g~~ 89 (112)
T 1qau_A 42 SGLIQAGDIILAVN-D------------RPLVD---LSYDSALEVLRGI---ASETHVVLILRGPEG 89 (112)
T ss_dssp HTCCCTTCEEEEET-T------------EECTT---SCHHHHHHHHHHS---CSSSEEEEEEECCTT
T ss_pred cCCCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHhC---CCCcEEEEEEeCCcc
Confidence 34459999998876 2 11200 0135677777652 234899999998763
No 163
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=57.92 E-value=16 Score=28.07 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=28.4
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCccc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEE 104 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~ 104 (488)
+++||+|.+|. | ..+.. ..-..+.+.|++. ...|.+.|.|++.+
T Consensus 48 l~~GD~I~~in-g------------~~v~~---~~~~~~~~~l~~~----g~~v~l~v~r~~~~ 91 (96)
T 2v90_A 48 MQAGDRLVAVA-G------------ESVEG---LGHEETVSRIQGQ----GSCVSLTVVDPEAD 91 (96)
T ss_dssp CCTTEEEEEET-T------------EECTT---CCHHHHHHHHHTT----TTEEEEEEECCCTT
T ss_pred CCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHcC----CCEEEEEEECCCCc
Confidence 99999999886 2 11200 0124566666652 34899999998763
No 164
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=57.71 E-value=26 Score=27.90 Aligned_cols=60 Identities=13% Similarity=0.215 Sum_probs=32.8
Q ss_pred EEEEEEccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEec
Q 011319 21 VLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRR 100 (488)
Q Consensus 21 V~~i~Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrR 100 (488)
|+...+..++. |+. .+.|++||+|.+|. | ..+.. -.-..+...|++ ..+.|.+.|.|
T Consensus 34 v~V~~V~~gsp-A~~--aG~L~~GD~Il~Vn-g------------~~v~~---~~~~~~~~~l~~----~~~~v~l~v~R 90 (106)
T 4amh_A 34 IYVTKIIEGGA-AHK--DGKLQIGDKLLAVN-N------------VALEE---VTHEEAVTALKN----TSDFVYLKVAK 90 (106)
T ss_dssp EEEEEECTTSH-HHH--HCCCCTTCEEEEET-T------------EECSS---CCHHHHHHHHHS----CCSEEEEEEEC
T ss_pred EEEEEECCCCH-HHH--CCCCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHhC----CCCeEEEEEEe
Confidence 44444444444 332 45699999999885 1 11200 001233344432 33489999999
Q ss_pred Ccc
Q 011319 101 GAE 103 (488)
Q Consensus 101 G~~ 103 (488)
+..
T Consensus 91 ~~~ 93 (106)
T 4amh_A 91 PGS 93 (106)
T ss_dssp CSS
T ss_pred CCC
Confidence 875
No 165
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=57.62 E-value=6.2 Score=34.32 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=36.1
Q ss_pred eEeeecCCC-cceeeeeeec------ccceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 300 IEIKLKEGD-SKLGFAISRT------EEGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 300 lEi~~~~gd-tRlGfaIsRT------EEGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
+++.++.++ ..|||.|.-- ...-++|++|.. ++||+++| |+ .|-.++ .+.|++|-
T Consensus 8 ~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~---~spA~~aG~l~--------~GD~I~--~vng~~v~ 70 (196)
T 1p1d_A 8 TEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEA---DSPAERCGVLQ--------IGDRVM--AINGIPTE 70 (196)
T ss_dssp EEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCT---TSHHHHTSCCC--------SSCCEE--EETTBCST
T ss_pred EEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECC---CCHHHHcCCCC--------CCCEEE--EECCEECC
Confidence 344454543 7899999863 133489999985 68999999 73 444433 45666653
No 166
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=56.70 E-value=16 Score=35.46 Aligned_cols=60 Identities=15% Similarity=0.321 Sum_probs=37.5
Q ss_pred cEEEEEEccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEe
Q 011319 20 TVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVR 99 (488)
Q Consensus 20 ~V~~i~Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVr 99 (488)
+|+...-..++.++ ..-|++||||.+|. | ..+ ..-..|.+.|.+. +.++ .|.++|.
T Consensus 264 G~~V~~V~~~spA~----~aGL~~GDvI~~in-g------------~~v-----~~~~~l~~~l~~~-~~g~-~v~l~v~ 319 (345)
T 3stj_A 264 GAFVSEVLPGSGSA----KAGVKAGDIITSLN-G------------KPL-----NSFAELRSRIATT-EPGT-KVKLGLL 319 (345)
T ss_dssp SEEEEEECTTSHHH----HHTCCTTCEECEET-T------------EEC-----SCHHHHHHHHHTS-CTTC-EEEEEEE
T ss_pred eEEEEEeccCChHH----HcCCCCCCEEEEEC-C------------EEC-----CCHHHHHHHHHhc-CCCC-EEEEEEE
Confidence 44444434454432 23599999999986 2 223 2335777777653 3244 8999999
Q ss_pred cCcc
Q 011319 100 RGAE 103 (488)
Q Consensus 100 RG~~ 103 (488)
|++.
T Consensus 320 R~g~ 323 (345)
T 3stj_A 320 RNGK 323 (345)
T ss_dssp ETTE
T ss_pred ECCE
Confidence 9886
No 167
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=56.70 E-value=9.2 Score=31.27 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=29.7
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+.|++||+|.+|. | ..+ .....+.++|++ + ....|.+.|.|+..
T Consensus 65 G~l~~GD~I~~in-g------------~~v-----~~~~~~~~~l~~--~-~g~~v~l~v~R~g~ 108 (124)
T 1wh1_A 65 GRIREGDRIIQIN-G------------IEV-----QNREEAVALLTS--E-ENKNFSLLIARPEL 108 (124)
T ss_dssp CCCCTTCEEEEES-S------------CBC-----CSHHHHHHHHTC--S-SCCSCCEEEEECSS
T ss_pred CCCCCCCEEEEEC-C------------EEC-----CCHHHHHHHHHh--C-CCCEEEEEEEECCE
Confidence 3499999999886 2 112 123577777765 2 23488999999886
No 168
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=56.44 E-value=15 Score=28.73 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=30.2
Q ss_pred ccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 27 LKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 27 v~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
|...+.|+.-+ |++||+|.+|. |.. +.. -.-..+.+.|++ . ...|.+.|.|.+.
T Consensus 37 V~~~spA~~aG---l~~GD~I~~in-g~~------------v~~---~~~~~~~~~l~~---~-g~~v~l~v~r~~~ 90 (102)
T 2d90_A 37 IEPGSPAEAAG---LKNNDLVVAVN-GKS------------VEA---LDHDGVVEMIRK---G-GDQTTLLVLDKEA 90 (102)
T ss_dssp CCTTSTTTTTT---CCTTCEEEEES-SCB------------CTT---SCHHHHHHHHHH---S-TTEEEEEECSTTC
T ss_pred ECCCCHHHHcC---CCCCCEEEEEC-CEE------------CCC---CCHHHHHHHHHc---C-CCEEEEEEEECCC
Confidence 44445454433 99999999886 211 100 001345555554 2 3489999976544
No 169
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=56.29 E-value=7.9 Score=32.69 Aligned_cols=77 Identities=14% Similarity=0.222 Sum_probs=47.6
Q ss_pred eeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceeccC
Q 011319 302 IKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFD 381 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~D 381 (488)
|.+++.+.-+||.+... .+-..|.+|.. ++||.++||. +|-. |=.+.|++|- ..+
T Consensus 21 l~l~~~~~g~G~~l~~~-~~~~~I~~V~~---gSpA~~AGL~--------~GD~--I~~Ing~~v~-----------~~s 75 (101)
T 3qik_A 21 LLILPQEEDYGFDIEEK-NKAVVVKSVQR---GSLAEVAGLQ--------VGRK--IYSINEDLVF-----------LRP 75 (101)
T ss_dssp EEECCCSSSSSEEEEEE-TTEEEEEEECT---TSHHHHHTCC--------TTCB--EEEETTEEST-----------TSC
T ss_pred EEEEeCCCcccEEEEcc-CCCeEEEEECC---CCHHHHcCCC--------CCCE--EEEECCEEcC-----------cCC
Confidence 33444456688888763 44578999996 7999999994 5544 3356787762 111
Q ss_pred cccccccccccccccCceEEEE
Q 011319 382 TVSLSQKLSLHRHAKVPILLHV 403 (488)
Q Consensus 382 t~slsqkLslhr~a~~pI~lHv 403 (488)
..++.+.+.....+..+|.|=|
T Consensus 76 ~~dv~~~i~~~~~~g~~v~LLV 97 (101)
T 3qik_A 76 FSEVESILNQSFCSRRPLRLLV 97 (101)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhhccCCeEEEEE
Confidence 2344455554445566766543
No 170
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=56.21 E-value=18 Score=27.27 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=28.4
Q ss_pred cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 40 MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 40 m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
-+++||+|.+|. | ..+.. ..-..+.+.|++. . ..|.+.|+|++.
T Consensus 43 GL~~GD~I~~in-g------------~~v~~---~~~~~~~~~l~~~---~-~~v~l~v~R~~~ 86 (87)
T 2pa1_A 43 DLRPGDIIVAIN-G------------ESAEG---MLHAEAQSKIRQS---P-SPLRLQLDRITS 86 (87)
T ss_dssp TCCTTCEEEEET-T------------EESTT---CCHHHHHHHHHTC---C-SSEEEEEEECCC
T ss_pred CCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHcC---C-CeEEEEEEecCC
Confidence 499999999886 2 12200 0125666776653 2 589999999873
No 171
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=56.13 E-value=24 Score=26.56 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=25.1
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+++||+|.+|. | ..+.. + .-..+.+.+++ . ...+.+.|.|+..
T Consensus 45 l~~GD~I~~in-g------------~~v~~-~--~~~~~~~~~~~---~-g~~v~l~v~R~g~ 87 (88)
T 2uzc_A 45 VRIGDVVLSID-G------------INAQG-M--THLEAQNKIKG---C-TGSLNMTLQRESD 87 (88)
T ss_dssp CCTTCEEEEET-T------------EECTT-C--CHHHHHHHHHT---C-CSEEEEEEECCCC
T ss_pred CCCCCEEEEEC-C------------EECCC-C--CHHHHHHHHHh---C-CCeEEEEEEeCCC
Confidence 99999999886 1 11200 0 01334444443 2 3489999998763
No 172
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=55.56 E-value=5.8 Score=42.08 Aligned_cols=39 Identities=33% Similarity=0.606 Sum_probs=30.0
Q ss_pred eEeeecCCCcceeeeeee-------cccceEEEEEeecCCCCCccchhh
Q 011319 300 IEIKLKEGDSKLGFAISR-------TEEGFIYISTVIDDDENIPSTRSG 341 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsR-------TEEGFiyVsSV~~~~~g~~a~RsG 341 (488)
.++.++.++..|||.|.- ..+..|||+.|.. |.||+++|
T Consensus 61 ~~v~l~k~~~glGf~i~gg~~~~~~~~~~g~~V~~v~~---gspA~~aG 106 (721)
T 2xkx_A 61 EEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIP---GGAAAQDG 106 (721)
T ss_pred EEEEEEeCCCCCCEEEeCCcCCcccCCCCCeEEEEeCC---CCHHHhcC
Confidence 455566666799999974 1356799999996 68999999
No 173
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=55.26 E-value=18 Score=27.70 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=29.4
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCccc
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEE 104 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~ 104 (488)
+.|++||+|.+|. | ..+.. ..-..+.++|++ ....+.+.|+|+..+
T Consensus 49 G~l~~GD~I~~in-g------------~~v~~---~~~~~~~~~l~~----~g~~v~l~v~R~~~~ 94 (97)
T 2jil_A 49 GTIKPGDRLLSVD-G------------IRLLG---TTHAEAMSILKQ----CGQEAALLIEYDVSE 94 (97)
T ss_dssp CCCCTTCEEEEET-T------------EECSS---CCHHHHHHHHHH----SCSEEEEEEEEECCC
T ss_pred CCCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHc----CCCeEEEEEEeCCCc
Confidence 4599999998876 2 12200 013566677765 334899999998753
No 174
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=54.91 E-value=36 Score=26.59 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=30.1
Q ss_pred EccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 26 CLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 26 Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.|...+.|+ .-+++||+|.+|. | ..+ .....++..+. +.+.++ .|.+.|+|+..
T Consensus 45 ~V~~~spA~----agl~~GD~I~~vn-g------------~~v-----~~~~~~~~~~~-~~~~g~-~v~l~v~R~~~ 98 (107)
T 2h2b_A 45 DVLKGGPAE----GQLQENDRVAMVN-G------------VSM-----DNVEHAFAVQQ-LRKSGK-NAKITIRRKKG 98 (107)
T ss_dssp EECTTSTTB----TTBCTTCEEEEET-T------------EEC-----TTCCHHHHHHH-HHTCCS-EEEEEEEEESC
T ss_pred EECCCCchh----hCCCCCCEEEEEC-C------------EEC-----CCccHHHHHHH-hhCCCC-EEEEEEEECCC
Confidence 344444443 4799999998885 1 112 11123333322 223334 89999988764
No 175
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.09 E-value=24 Score=27.43 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=25.6
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
|++||+|.+|. + ..+ .... +...+..+ +.. ..|.+.|+|+..
T Consensus 54 L~~GD~I~~in-g------------~~v-----~~~~-~~~~~~~~-~~~-~~v~l~v~R~g~ 95 (100)
T 2eeh_A 54 LCVGDKITEVN-G------------LSL-----ESTT-MGSAVKVL-TSS-SRLHMMVRRMGS 95 (100)
T ss_dssp CCSSCEEEEET-T------------EEC-----SSCC-HHHHHHHH-HSC-SSEEEEEEECSC
T ss_pred CCCCCEEEEEC-C------------EEC-----CCCC-HHHHHHhh-cCC-CEEEEEEEECCc
Confidence 99999999887 2 112 1111 33333333 324 489999999875
No 176
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=54.07 E-value=6.9 Score=40.42 Aligned_cols=36 Identities=22% Similarity=0.624 Sum_probs=28.3
Q ss_pred eecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhH
Q 011319 303 KLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGL 342 (488)
Q Consensus 303 ~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL 342 (488)
.++.+ ..|||.|..-+++-|+|++|.. |.||+++||
T Consensus 6 ~l~k~-~~lG~~i~gg~~~Gi~V~~V~~---gspA~~aGL 41 (468)
T 3shw_A 6 KFRKG-DSVGLRLAGGNDVGIFVAGVLE---DSPAAKEGL 41 (468)
T ss_dssp EEECC-SSCCEEEEEETTTEEEEEEECS---SSHHHHTTC
T ss_pred EEecC-CccceEEEccCcCCEEEEEECC---CCHHHHcCC
Confidence 34444 6699999766556699999996 799999997
No 177
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=53.38 E-value=27 Score=26.53 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=11.6
Q ss_pred cccccCCceeeeEe
Q 011319 38 ADMLQTGDIVEEFT 51 (488)
Q Consensus 38 e~m~l~GDIVE~~~ 51 (488)
.+.+++||+|.+|.
T Consensus 49 aG~l~~GD~I~~vn 62 (94)
T 2fe5_A 49 DGRLQIGDRLLAVN 62 (94)
T ss_dssp HCCCCTTCEEEEET
T ss_pred cCCCCCCCEEEEEC
Confidence 35599999999886
No 178
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=53.30 E-value=36 Score=26.20 Aligned_cols=42 Identities=12% Similarity=0.267 Sum_probs=25.1
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
|++||+|.+|. + ..+ .....+ ..+. ..+.+ ..|.+.|+|++.
T Consensus 47 L~~GD~I~~in-g------------~~v-----~~~~~~-~~~~-~~~~g-~~v~l~v~R~~~ 88 (93)
T 2dls_A 47 VKEGDRIIKVN-G------------TMV-----TNSSHL-EVVK-LIKSG-AYVALTLLGSSS 88 (93)
T ss_dssp CCSSCEEEEET-T------------EEC-----SSSCHH-HHHH-HHTSS-SEEEEEEECCCC
T ss_pred CCCCCEEEEEC-C------------EEC-----CCCCHH-HHHH-hhcCC-CEEEEEEEECCC
Confidence 99999999887 2 112 111122 2333 33434 489999999764
No 179
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=53.28 E-value=24 Score=27.59 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=32.6
Q ss_pred EEEccCCccccccccc-cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecC
Q 011319 24 IDCLKGTSKADEWTAD-MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRG 101 (488)
Q Consensus 24 i~Cv~gss~aeEW~e~-m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG 101 (488)
|..|...+.|+. .+ .|++||+|.+|. | ..+.. -....+...|++.-.+..+.|.+.|+|+
T Consensus 47 V~~V~~~spA~~--aG~rL~~GD~Il~in-g------------~~v~~---~~~~~~~~~i~~~~~~~~~~v~l~v~r~ 107 (107)
T 3nfk_A 47 VSRVAPGTPADL--CVPRLNEGDQVVLIN-G------------RDIAE---HTHDQVVLFIKASCERHSGELMLLVRPN 107 (107)
T ss_dssp EEEECTTSHHHH--SSSCCCTTCEEEEET-T------------EECTT---CCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred EEEECCCCchHH--cCCccCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence 444444443332 34 399999999886 2 11200 0113455556554433335899999884
No 180
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=52.91 E-value=11 Score=30.30 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=11.1
Q ss_pred ccccCCceeeeEe
Q 011319 39 DMLQTGDIVEEFT 51 (488)
Q Consensus 39 ~m~l~GDIVE~~~ 51 (488)
+.|++||+|.+|.
T Consensus 55 G~L~~GD~I~~vn 67 (119)
T 1tp5_A 55 GELRKGDQILSVN 67 (119)
T ss_dssp SCCCTTEEEEEET
T ss_pred CCCCCCCEEEEEC
Confidence 4599999998886
No 181
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=57.92 E-value=2.9 Score=34.26 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=25.7
Q ss_pred CCcceeeeeeeccc--ceEEEEEeecCCCCCccch-hhHH
Q 011319 307 GDSKLGFAISRTEE--GFIYISTVIDDDENIPSTR-SGLS 343 (488)
Q Consensus 307 gdtRlGfaIsRTEE--GFiyVsSV~~~~~g~~a~R-sGL~ 343 (488)
+...|||.|....+ .-++|++|.. ++||++ +||+
T Consensus 37 ~~~glG~~l~~g~~~~~gv~V~~V~~---~spA~~~aGL~ 73 (112)
T 2lob_A 37 DHEGLGISITGGKEHGVPILISEIHP---GQPADRCGGLH 73 (112)
Confidence 34689999976422 2479999996 799999 8984
No 182
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=52.47 E-value=13 Score=31.56 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=31.9
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
...|++||+|.+|+-.+-.+ ..+ ..+.++|++.-+ + +.+.+.|+|+..
T Consensus 47 ~aGL~~GD~Il~VNG~~v~~--------~~h--------~evv~~lk~~~~-G-~~v~L~V~R~g~ 94 (113)
T 3soe_A 47 CQGLQKGDIIKEIYHQNVQN--------LTH--------LQVVEVLKQFPV-G-ADVPLLILRGGP 94 (113)
T ss_dssp STTCCTTCEEEEETTEECTT--------SCH--------HHHHHHHHHSCT-T-CEEEEEEEESSC
T ss_pred hCCCCCCCEEEEECCEECCC--------CCH--------HHHHHHHHcCCC-C-CEEEEEEEECCc
Confidence 56899999999997111111 112 467777776432 3 379999999986
No 183
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=52.47 E-value=23 Score=26.86 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=25.0
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+++||+|.+|. | ..+... .-..+.+.+++. + ..+.+.|+|+..
T Consensus 45 l~~GD~I~~in-g------------~~v~~~---~~~~~~~~~~~~---g-~~v~l~v~R~~~ 87 (89)
T 2q3g_A 45 VAVGDWVLSID-G------------ENAGSL---THIEAQNKIRAC---G-ERLSLGLSRAIT 87 (89)
T ss_dssp CCTTCEEEEET-T------------EEGGGC---CHHHHHHHHHTC---T-TEEEEEEEEECC
T ss_pred CCCCCEEEEEC-C------------EECCCC---CHHHHHHHHHhC---C-CEEEEEEEeCCC
Confidence 99999998885 1 222100 113344444432 3 378999988764
No 184
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=52.09 E-value=27 Score=36.70 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=41.1
Q ss_pred cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcccceeeeEEeecCCCcc
Q 011319 40 MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPESGGR 119 (488)
Q Consensus 40 m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~~~eL~AciVpess~~ 119 (488)
-+++||+|.+|. | ..+. ...|.++|.+. +.+ ..|.|.|.|++. .+...+.+...-.
T Consensus 513 GL~~GD~I~aIn-G------------~~v~------~~~l~~~l~~~-~~g-~~v~l~v~R~g~---~~~~~v~l~~~~~ 568 (597)
T 4fgm_A 513 GLSAGDKIIAID-H------------LQAT------EQSVKRILERY-IPG-DTVTIHAFRRDE---LMTLELTWQEPAK 568 (597)
T ss_dssp TCCTTCEEEEET-T------------EECC------TTTHHHHHTTC-CTT-CEEEEEEEETTE---EEEEEEECCCCCC
T ss_pred CCCCCCEEEEEC-C------------EECC------HHHHHHHHHhc-CCC-CEEEEEEEECCE---EEEEEEEecCCCC
Confidence 589999999885 1 2221 15688888754 434 489999999885 3344444433322
Q ss_pred cceeEEeeccC
Q 011319 120 RNCYMLRSITD 130 (488)
Q Consensus 120 kk~yvlrs~~D 130 (488)
. +|.|....+
T Consensus 569 ~-~~~l~~~~~ 578 (597)
T 4fgm_A 569 S-SYVLSVEQP 578 (597)
T ss_dssp C-EEEEEESCG
T ss_pred c-eEEEEECCH
Confidence 3 676766543
No 185
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=52.00 E-value=65 Score=26.83 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=30.0
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.-+++||+|.+|. | ..+ ..-..|.+.|.+. +.++ .|.+.|.|++.
T Consensus 72 aGL~~GD~I~~in-G------------~~v-----~~~~~l~~~l~~~-~~g~-~v~l~v~R~g~ 116 (134)
T 2l97_A 72 GHLEKYDVITKVD-D------------KEI-----ASSTDLQSALYNH-SIGD-TIKITYYRNGK 116 (134)
T ss_dssp TTSCSSCEEEEET-T------------EEC-----CCHHHHHHHHHHS-STTC-EEEEEEEETTE
T ss_pred HCCCCCCEEEEEC-C------------EEc-----CCHHHHHHHHHhC-CCCC-EEEEEEEECCE
Confidence 3699999999886 2 223 2235677777643 2244 89999999875
No 186
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=51.82 E-value=23 Score=26.45 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=24.6
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGA 102 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~ 102 (488)
+++||+|.+|. | ..+.. + .-..+.+.|++ ....+.+.|.|+.
T Consensus 41 l~~GD~I~~in-g------------~~v~~-~--~~~~~~~~l~~----~~~~v~l~v~R~~ 82 (83)
T 2kv8_A 41 LRAGDQILAVN-E------------INVKK-A--SHEDVVKLIGK----CSGVLHMVIAEGV 82 (83)
T ss_dssp CCTTCEEEEET-T------------EECSS-C--CHHHHHHHHTT----CSSCEEEEEECCC
T ss_pred CCCCCEEEEEC-C------------EECCC-C--CHHHHHHHHHh----CCCeEEEEEEcCC
Confidence 99999999886 2 11200 0 01344444432 2236999999875
No 187
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=51.79 E-value=31 Score=26.28 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=25.7
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+++||+|.+|. | ..+ .....++.. ..+.+ ....|.+.|.|++.
T Consensus 52 l~~GD~I~~in-g------------~~v-----~~~~~~~~~-~~~~~-~g~~v~l~v~R~g~ 94 (97)
T 2w4f_A 52 VRVGDKLLEVN-G------------VAL-----QGAEHHEAV-EALRG-AGTAVQMRVWRERE 94 (97)
T ss_dssp CCTTCEEEEET-T------------EEC-----TTCCHHHHH-HHHHT-SCSEEEEEEECCSS
T ss_pred CCCCCEEEEEC-C------------EEC-----CCcCHHHHH-HHHhC-CCCeEEEEEEeCCc
Confidence 99999999887 2 122 111233222 22223 34489999999875
No 188
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=51.28 E-value=27 Score=26.74 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=17.1
Q ss_pred EEEEEEccCCccccccccccccCCceeeeEe
Q 011319 21 VLSIDCLKGTSKADEWTADMLQTGDIVEEFT 51 (488)
Q Consensus 21 V~~i~Cv~gss~aeEW~e~m~l~GDIVE~~~ 51 (488)
|+-.. |...+.|+. -|++||+|.+|.
T Consensus 37 v~V~~-V~~~spA~~----gL~~GD~I~~vn 62 (95)
T 1mfg_A 37 IFVTR-VQPEGPASK----LLQPGDKIIQAN 62 (95)
T ss_dssp EEEEE-ECTTSTTTT----TCCTTCEEEEET
T ss_pred EEEEE-ECCCCchhh----CCCCCCEEEEEC
Confidence 44333 444454544 699999999886
No 189
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=51.26 E-value=25 Score=27.71 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=30.8
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.-+++||+|.+|. | ..+ ..-..+.+.|.+... +..|.+.|+|+..
T Consensus 18 aGl~~GD~I~~in-g------------~~v-----~~~~d~~~~l~~~~~--~~~v~l~v~R~g~ 62 (95)
T 3id1_A 18 AQIAPGTELKAVD-G------------IET-----PDWDAVRLQLVDKIG--DESTTITVAPFGS 62 (95)
T ss_dssp TTCCTTCEEEEET-T------------EEC-----SSHHHHHHHHHHTTT--CSEEEEEEECTTC
T ss_pred cCCCCCCEEEEEC-C------------EEC-----CCHHHHHHHHHHhcC--CCcEEEEEEECCC
Confidence 4599999999985 2 223 223678888875332 2479999999874
No 190
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=51.21 E-value=17 Score=30.74 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=27.5
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCccc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEE 104 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~ 104 (488)
|++||+|.+|. | ..+.. ..-..+.++|++ + ....|.+.|.|++.+
T Consensus 82 L~~GD~I~~vn-g------------~~v~~---~~~~~~~~~l~~--~-~g~~v~l~v~R~g~~ 126 (139)
T 2vz5_A 82 LQIGDKIMQVN-G------------WDMTM---VTHDQARKRLTK--R-SEEVVRLLVTRQSLQ 126 (139)
T ss_dssp CCTTCEEEEET-T------------EECTT---CCHHHHHHHHCC--T-TCSEEEEEEEECC--
T ss_pred CCCCCEEEEEC-C------------EEcCC---CCHHHHHHHHHh--C-CCCEEEEEEEECCEE
Confidence 99999999886 2 11200 012466666664 2 334899999998763
No 191
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=51.17 E-value=3.6 Score=33.74 Aligned_cols=73 Identities=8% Similarity=0.147 Sum_probs=44.4
Q ss_pred cCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceeccCccc
Q 011319 305 KEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVS 384 (488)
Q Consensus 305 ~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~Dt~s 384 (488)
+.++..|||.+. ... -++|.+|.. +.||.++||+ .|-.+ =.+.|++|- .++...
T Consensus 22 ~~~~~~~G~~l~-~~~-~v~V~~V~~---~spA~~aGL~--------~GD~I--l~InG~~v~-----------~~~~~d 75 (111)
T 1vae_A 22 TVEEGDLGFTLR-GNT-PVQVHFLDP---HCSASLAGAK--------EGDYI--VSIQGVDCK-----------WLTVSE 75 (111)
T ss_dssp ECCSSCCSCCEE-SSS-SCEECCCCT---TSSHHHHHCC--------TTCEE--EEETTEECS-----------SCCHHH
T ss_pred EcCCCcccEEEe-CCC-CEEEEEECC---CCHHHHcCCC--------CCCEE--EEECCEECC-----------CCCHHH
Confidence 345678899883 333 367888875 7899999984 55554 367787764 123344
Q ss_pred ccccccccccccCceEEEEEE
Q 011319 385 LSQKLSLHRHAKVPILLHVFL 405 (488)
Q Consensus 385 lsqkLslhr~a~~pI~lHvm~ 405 (488)
+.+.|..+ ...+|.|-|.-
T Consensus 76 ~~~~i~~~--~~~~v~l~V~~ 94 (111)
T 1vae_A 76 VMKLLKSF--GGEEVEMKVVS 94 (111)
T ss_dssp HHHHHHHT--TTSEECEEEEC
T ss_pred HHHHHHhC--CCceEEEEEEe
Confidence 44544433 23356666643
No 192
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=50.60 E-value=9.6 Score=32.29 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=36.5
Q ss_pred ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceeccCcccccccccccccccCceE
Q 011319 321 GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQKLSLHRHAKVPIL 400 (488)
Q Consensus 321 GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~Dt~slsqkLslhr~a~~pI~ 400 (488)
.-++|.+|.. ++||.++||+ .|-.++ .+.|++|.- ++...+.+.|.. ....+|.
T Consensus 64 ~gv~V~~V~~---~spA~~aGL~--------~GD~I~--~vng~~v~~-----------~~~~~~~~~l~~--~~g~~v~ 117 (139)
T 2vz5_A 64 KGIYVTRVSE---GGPAEIAGLQ--------IGDKIM--QVNGWDMTM-----------VTHDQARKRLTK--RSEEVVR 117 (139)
T ss_dssp CCEEEEEECT---TSHHHHHTCC--------TTCEEE--EETTEECTT-----------CCHHHHHHHHCC--TTCSEEE
T ss_pred CCEEEEEECC---CCHHHHCCCC--------CCCEEE--EECCEEcCC-----------CCHHHHHHHHHh--CCCCEEE
Confidence 4589999996 7999999984 565444 777776632 223344444432 3446676
Q ss_pred EEEE
Q 011319 401 LHVF 404 (488)
Q Consensus 401 lHvm 404 (488)
|-|.
T Consensus 118 l~v~ 121 (139)
T 2vz5_A 118 LLVT 121 (139)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6654
No 193
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=50.41 E-value=34 Score=26.98 Aligned_cols=46 Identities=24% Similarity=0.313 Sum_probs=28.1
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCccc
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEE 104 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~ 104 (488)
+.|++||+|.+|. | .. +.. .....+.++|++. + ..|.+.|+|+..+
T Consensus 55 G~l~~GD~I~~vn-g-~~-----------v~~---~~~~~~~~~l~~~---g-~~v~l~v~R~~~~ 100 (111)
T 2dlu_A 55 GRLQTGDHILKIG-G-TN-----------VQG---MTSEQVAQVLRNC---G-NSVRMLVARDPAG 100 (111)
T ss_dssp TCCCSSCEEEEES-S-CC-----------CTT---SCHHHHHHHHHHH---C-SEEEEEEEESCTT
T ss_pred CCCCCCCEEEEEC-C-EE-----------CCC---CCHHHHHHHHHhC---C-CeEEEEEEeCCCC
Confidence 4599999998886 2 11 100 0124555666552 3 3799999998753
No 194
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=50.38 E-value=26 Score=27.08 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=27.2
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+++||+|.+|. | ..+.. .....+...|+ +.+ ..+.+.|+|++.
T Consensus 52 l~~GD~I~~in-g------------~~v~~---~~~~~~~~~l~---~~g-~~v~l~v~r~~~ 94 (99)
T 3khf_A 52 LRAGDLITHIN-G------------ESVLG---LVHMDVVELLL---KSG-NKISLRTTALEN 94 (99)
T ss_dssp CCTTCEEEEET-T------------EECTT---CCHHHHHHHHH---HSC-SEEEEEEECSCS
T ss_pred CCCCCEEEEEC-C------------EECCC---CCHHHHHHHHh---cCC-CEEEEEEEECCC
Confidence 99999999986 1 11200 01245566665 333 489999999665
No 195
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=50.05 E-value=13 Score=32.24 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=47.2
Q ss_pred eeEeeecCCCcceeeeeee-cc-----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecceee
Q 011319 299 AIEIKLKEGDSKLGFAISR-TE-----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPWIV 371 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsR-TE-----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPwmV 371 (488)
.+++.+..+...|||.|.. ++ ..-++|++|.. +.||.++| | +.|-.++ .+.|++|-
T Consensus 107 ~~~v~l~~~~~~lG~~l~~g~~~~~~~~~g~~V~~v~~---~s~A~~aG~l--------~~GD~I~--~ing~~v~---- 169 (200)
T 2qt5_A 107 TVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRP---GGPADREGTI--------KPGDRLL--SVDGIRLL---- 169 (200)
T ss_dssp EEEEEEECBTTBCSEEEEEECCSSTTTCEEEEEEEECT---TSHHHHHCCC--------CTTCEEE--EETTEECT----
T ss_pred EEEEEEecCCCCeEEEEECCCCCCccCCCCEEEEEECC---CChHHHcCCC--------CCCCEEE--EECCEECC----
Confidence 3444444556789998763 21 34589999986 79999999 7 3454433 46676553
Q ss_pred ecCCceeccCcccccccccccccccCceEEEEE
Q 011319 372 SSTGAVRCFDTVSLSQKLSLHRHAKVPILLHVF 404 (488)
Q Consensus 372 sSsGaIrC~Dt~slsqkLslhr~a~~pI~lHvm 404 (488)
.+++..+.+.|. ....++.|.|.
T Consensus 170 -------~~~~~~~~~~l~---~~~~~v~l~v~ 192 (200)
T 2qt5_A 170 -------GTTHAEAMSILK---QCGQEATLLIE 192 (200)
T ss_dssp -------TCCHHHHHHHHH---TTCSEEEEEEE
T ss_pred -------CCCHHHHHHHHH---cCCCeEEEEEE
Confidence 123334444443 25566766654
No 196
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=49.83 E-value=15 Score=28.10 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=25.9
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+++||+|.+|. | ..+.. ..-..+.+.|++. ...|.+.|.|++.
T Consensus 45 l~~GD~I~~in-g------------~~v~~---~~~~~~~~~l~~~----g~~v~l~v~r~~~ 87 (91)
T 2vsp_A 45 LEDEDVIIEVN-G------------VNVLD---EPYEKVVDRIQSS----GKNVTLLVCGKKA 87 (91)
T ss_dssp CCTTCEEEEET-T------------EECTT---SCHHHHHHHHTTS----CSEEEEEEEC---
T ss_pred CCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHcC----CCEEEEEEEeCCc
Confidence 99999999886 2 11200 0125666666653 4489999999875
No 197
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=49.61 E-value=8.8 Score=33.35 Aligned_cols=58 Identities=21% Similarity=0.343 Sum_probs=36.3
Q ss_pred ceeeeEeeecCCCcceeeeeeecc----cceEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 296 GELAIEIKLKEGDSKLGFAISRTE----EGFIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 296 ~E~~lEi~~~~gdtRlGfaIsRTE----EGFiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.++.+++.. .....|||.+..-. ..-++|.+|.. +.||.++| |+ .|-.++ .+.|++|.
T Consensus 107 ~~~~v~l~~-~~~~~lG~~~~~~~~~~~~~gv~V~~V~~---~s~A~~aG~l~--------~GD~I~--~vng~~v~ 169 (196)
T 1p1d_A 107 GTFHVKLPK-KHSVELGITISSPSSRKPGDPLVISDIKK---GSVAHRTGTLE--------LGDKLL--AIDNIRLD 169 (196)
T ss_dssp SCEEEEECC-CSSCCCCCEEECSCSSSTTCCCEEEECCS---SSHHHHTSCCC--------TTCEEE--EETTEEGG
T ss_pred CcEEEEecC-CCCCCcCEEEECCCCCCCCCCEEEEEECC---CCcHHhcCCCC--------CCCEEE--EECCEECC
Confidence 444455432 34567899886531 23478999986 79999999 74 444332 46666553
No 198
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.35 E-value=16 Score=30.16 Aligned_cols=73 Identities=10% Similarity=0.193 Sum_probs=47.2
Q ss_pred Ccceeeeeeecc-----cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceeccCc
Q 011319 308 DSKLGFAISRTE-----EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDT 382 (488)
Q Consensus 308 dtRlGfaIsRTE-----EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~Dt 382 (488)
+.++||.+.-+. ...++|.+|.. .+++||.++|| +.|-.++ .|.|++|--| .+
T Consensus 26 ~g~~G~~v~l~~~~~~~~~gv~V~~V~~-~~~spA~~aGL--------~~GD~Il--~Vng~~v~~~-----------~~ 83 (118)
T 2yub_A 26 ECRRGFSVTVESASSNYATTVQVKEVNR-MHISPNNRNAI--------HPGDRIL--EINGTPVRTL-----------RV 83 (118)
T ss_dssp SSSCSSEEEEECTTSSSCCEEEEEECCT-TTSCTTHHHHC--------CTTCCEE--EESSSBTTTS-----------CH
T ss_pred CCCceEEEEeccccccCCCcEEEEEecC-CCCChHHHcCC--------CCCCEEE--EECCEECCCc-----------CH
Confidence 456788888553 25789999984 11689999998 4555544 6777765432 33
Q ss_pred ccccccccccccccCceEEEEEE
Q 011319 383 VSLSQKLSLHRHAKVPILLHVFL 405 (488)
Q Consensus 383 ~slsqkLslhr~a~~pI~lHvm~ 405 (488)
..+.+.|..+ ..+|.|.|.-
T Consensus 84 ~dl~~~l~~~---g~~v~l~v~R 103 (118)
T 2yub_A 84 EEVEDAIKQT---SQTLQLLIEH 103 (118)
T ss_dssp HHHHHHHHCC---SSCEEEEEEE
T ss_pred HHHHHHHHhC---CCEEEEEEEE
Confidence 4555566554 5677777753
No 199
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=49.22 E-value=21 Score=28.67 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=34.0
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.+.|++||+|.+|. | .+ +.. -.-..+.++|++.-.+..+.+.|.|.|...
T Consensus 57 aG~l~~GD~Il~Vn-g-~~-----------~~~---~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~ 106 (109)
T 1wi4_A 57 DGRLKPGDQLVSIN-K-ES-----------MIG---VSFEEAKSIITRAKLRSESPWEIAFIRSGP 106 (109)
T ss_dssp HCSCCTTCBEEEET-T-SC-----------CTT---CCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred CCCCCCCCEEEEEC-C-EE-----------CCC---CCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence 45599999998876 2 11 100 113677888888776667789999998763
No 200
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=49.15 E-value=15 Score=30.44 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=34.6
Q ss_pred EEEccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCch--hhHHHHHhhhhcCccceEEEEEecC
Q 011319 24 IDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGR--SGVQKILHGSFKNKETSILVRVRRG 101 (488)
Q Consensus 24 i~Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gk--sgl~k~L~k~~k~~e~si~vrVrRG 101 (488)
|..|...+.|+. . -|++||+|.+|. | ..+ ... ..+.+.|.+.. ....+.+.|+|.
T Consensus 55 V~~V~~gspA~~--a-GL~~GD~Il~Vn-g------------~~v-----~~~~~~~~~~~l~~~~--~g~~v~l~v~R~ 111 (124)
T 3tsv_A 55 VAGVLEDSPAAK--E-GLEEGDQILRVN-N------------VDF-----TNIIREEAVLFLLDLP--KGEEVTILAQKK 111 (124)
T ss_dssp EEEECTTCHHHH--T-TCCTTEEEEEET-T------------EEC-----SSCCHHHHHHHHHHSC--TTCEEEEEEEEC
T ss_pred EEEECCCCHHHH--c-CCCCCCEEEEEC-C------------EEC-----CCCCHHHHHHHHHhcC--CCCEEEEEEEEC
Confidence 344544444443 2 399999999886 2 122 111 45666665432 234799999998
Q ss_pred cccc
Q 011319 102 AEEF 105 (488)
Q Consensus 102 ~~~~ 105 (488)
..++
T Consensus 112 ~~~~ 115 (124)
T 3tsv_A 112 KDVY 115 (124)
T ss_dssp HHHH
T ss_pred Cchh
Confidence 7643
No 201
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=48.91 E-value=16 Score=28.60 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=25.4
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
|++||+|.+|. | ..+... ....+...+++ .++ .|.+.|.|+..
T Consensus 47 L~~GD~I~~in-g------------~~v~~~---~~~~~~~~~~~---~g~-~v~l~v~R~g~ 89 (103)
T 1wf7_A 47 VRIGDVVLSID-G------------ISAQGM---THLEAQNKIKA---CTG-SLNMTLQRASA 89 (103)
T ss_dssp CCTTCBEEEET-T------------EECSSC---CHHHHHHHHHH---CSS-EEEEEECCCSC
T ss_pred CCCCCEEEEEC-C------------EECCCC---CHHHHHHHHHc---CCC-eEEEEEEeCCC
Confidence 99999998885 1 112100 01233444443 233 79999999886
No 202
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=48.57 E-value=19 Score=27.74 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=27.6
Q ss_pred cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 40 MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 40 m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
-|++||+|.+|. + ..+.. + ....+.+.|++. . ..+.+.|+|+..
T Consensus 47 GL~~GD~I~~in-g------------~~v~~-~--~~~~~~~~l~~~---~-~~v~l~v~R~g~ 90 (94)
T 1vb7_A 47 DLRPGDIIVAIN-G------------QSAEN-M--LHAEAQSKIRQS---A-SPLRLQLDRSSG 90 (94)
T ss_dssp TCCTTCEEEEET-T------------EECTT-C--CHHHHHHHHHTC---C-SSEEEEEECCCC
T ss_pred CCCCCCEEEEEC-C------------EECCC-C--CHHHHHHHHHhC---C-CcEEEEEEECCc
Confidence 399999999886 2 12200 0 014555666543 2 589999999875
No 203
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=48.55 E-value=27 Score=27.95 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=25.9
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+.|++||+|.+|. | ..+.. -.-..+.+.+++ .+ ..|.+.|+|++.
T Consensus 66 G~L~~GD~Il~Vn-g------------~~v~~---~~~~~~~~~l~~---~g-~~v~l~v~R~~~ 110 (112)
T 2r4h_A 66 GKMRIGDEILEIN-G------------ETTKN---MKHSRAIELIKN---GG-RRVRLFLKRGET 110 (112)
T ss_dssp TCCCTTCEEEEET-T------------EECTT---CCHHHHHHHHHT---TT-TEEEEEEECCEE
T ss_pred CCCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHc---CC-CeEEEEEEeCCc
Confidence 4599999998876 1 11200 001233444443 23 379999998874
No 204
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=48.46 E-value=45 Score=25.19 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=29.5
Q ss_pred cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 40 MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 40 m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
-+++||+|.+|. | ..+ ..-..+.+.|.+. .+ ..+.+.|.|++.
T Consensus 21 Gl~~GD~I~~in-g------------~~v-----~~~~~~~~~l~~~--~g-~~v~l~v~R~g~ 63 (91)
T 2zpm_A 21 GLQAGDRIVXVD-G------------QPL-----TQWVTFVMLVRDN--PG-XSLALEIERQGS 63 (91)
T ss_dssp TCCTTCEEEEET-T------------EEC-----CCHHHHHHHHHHC--TT-CCEEEEEEETTE
T ss_pred CCCCCCEEEEEC-C------------eEc-----CCHHHHHHHHhcC--CC-CeEEEEEEECCe
Confidence 499999999886 2 222 1225777777763 23 378999999875
No 205
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=48.33 E-value=40 Score=25.49 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=10.3
Q ss_pred ccCCceeeeEe
Q 011319 41 LQTGDIVEEFT 51 (488)
Q Consensus 41 ~l~GDIVE~~~ 51 (488)
|++||+|.+|.
T Consensus 45 L~~GD~I~~in 55 (91)
T 1g9o_A 45 LLAGDRLVEVN 55 (91)
T ss_dssp CCTTCEEEEET
T ss_pred CCCCCEEEEEC
Confidence 99999999987
No 206
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.21 E-value=3.3 Score=34.02 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=23.1
Q ss_pred ceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 321 GFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 321 GFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
.-++|.+|.. ++||.++||+ .|-.++ .|.|++|
T Consensus 61 ~gv~V~~V~~---~spA~~aGL~--------~GD~I~--~ing~~v 93 (126)
T 2yuy_A 61 DTIFVKQVKE---GGPAFEAGLC--------TGDRII--KVNGESV 93 (126)
T ss_dssp CCCCBCCCCS---SSHHHHHTCC--------SSCCCC--EETTEEC
T ss_pred CCEEEEEECC---CChHHHcCCC--------CCCEEE--EECCEEC
Confidence 4488999986 7999999984 444433 5566655
No 207
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=48.16 E-value=28 Score=27.31 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=28.1
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcccc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEF 105 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~~ 105 (488)
.+.|++||+|.+|. + ..+.. -.-..+...|++ ....|.+.|.|++...
T Consensus 54 aG~L~~GD~I~~in-g------------~~v~~---~~~~~~~~~~~~----~g~~v~l~v~R~~~~~ 101 (106)
T 3axa_A 54 DGRLAAGDQLLSVD-G------------RSLVG---LSQERAAELMTR----TSSVVTLEVAKQGAIR 101 (106)
T ss_dssp HCCCCTTCEEEEET-T------------EECTT---CCHHHHHHHHHT----CCSEEEEEEECCCSSC
T ss_pred cCCCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHc----CCCeEEEEEEeCCccc
Confidence 34599999999886 1 11200 011334444443 3348999999987643
No 208
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=47.98 E-value=20 Score=28.66 Aligned_cols=45 Identities=18% Similarity=0.239 Sum_probs=29.1
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.-|++||+|.+|. +..... .. -..+.++|++ ....|.+.|+|++.
T Consensus 60 agL~~GD~I~~in-g~~v~~-------~~--------~~~~~~~l~~----~g~~v~l~v~r~~~ 104 (114)
T 1uew_A 60 AKLKVGDRILAVN-GQSIIN-------MP--------HADIVKLIKD----AGLSVTLRIIPQEE 104 (114)
T ss_dssp SSCCTTCBEEEET-TBCTTT-------SC--------HHHHHHHHHH----TTTEEEEEECCCSC
T ss_pred CCCCCCCEEEEEC-CEECCC-------CC--------HHHHHHHHHc----CCCeEEEEEEeCCc
Confidence 4699999999886 211100 00 2566666664 33489999999875
No 209
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=47.27 E-value=15 Score=28.13 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=11.6
Q ss_pred cccccCCceeeeEe
Q 011319 38 ADMLQTGDIVEEFT 51 (488)
Q Consensus 38 e~m~l~GDIVE~~~ 51 (488)
.+.+++||+|.+|.
T Consensus 45 aG~L~~GD~I~~vn 58 (95)
T 2vwr_A 45 DGRLSSNDRVLAIN 58 (95)
T ss_dssp HCCCCTTCEEEEET
T ss_pred CCCCCCCCEEEEEC
Confidence 34599999999886
No 210
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=47.20 E-value=15 Score=29.46 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=32.8
Q ss_pred eeecCCC-cceeeeeeecc--------cceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 302 IKLKEGD-SKLGFAISRTE--------EGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 302 i~~~~gd-tRlGfaIsRTE--------EGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
+.++.+. ..|||.|..-. +.-++|.+|.. +.||+ +|| +.|-.++ .|.|++|
T Consensus 18 v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~---~spA~-~gL--------~~GD~I~--~Vng~~v 77 (117)
T 2csj_A 18 VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLP---GGPAD-GLL--------QENDRVV--MVNGTPM 77 (117)
T ss_dssp EEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECT---TSSHH-HHB--------CTTCEEE--EESSCBC
T ss_pred EEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECC---CCccc-ccC--------CCCCEEE--EECCEEC
Confidence 4444443 78999997642 22389999996 67886 887 4454433 4666665
No 211
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=46.92 E-value=30 Score=26.52 Aligned_cols=45 Identities=13% Similarity=0.281 Sum_probs=27.4
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGA 102 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~ 102 (488)
.+.|++||+|.+|. | ..+.. -....+.+.|++ ....|.+.|+|++
T Consensus 53 aG~L~~GD~I~~in-g------------~~v~~---~~~~~~~~~l~~----~g~~v~l~v~R~g 97 (98)
T 1ihj_A 53 CGRLKVGDRILSLN-G------------KDVRN---STEQAVIDLIKE----ADFKIELEIQTFD 97 (98)
T ss_dssp HCSCCTTCEEEEET-T------------EECTT---CCHHHHHHHHHH----SCSEEEEEEEEC-
T ss_pred cCCCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHhc----CCCeEEEEEEeCC
Confidence 35599999999886 2 11200 001456666654 2348999999975
No 212
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=46.36 E-value=41 Score=26.00 Aligned_cols=44 Identities=14% Similarity=0.223 Sum_probs=29.1
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCc--hhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNG--RSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~g--ksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.+.+++||+|.+|. | ..+ .+ -..+.++|++. .+ .+.+.|+|.+.
T Consensus 55 aG~l~~GD~I~~in-g------------~~v-----~~~~~~~~~~~l~~~---~~-~v~l~v~r~~~ 100 (103)
T 2fcf_A 55 NGTLKPGDRIVEVD-G------------MDL-----RDASHEQAVEAIRKA---GN-PVVFMVQSIIS 100 (103)
T ss_dssp HCCCCTTCEEEEET-T------------EEC-----TTCCHHHHHHHHHTC---CS-SEEEEEECCCC
T ss_pred cCCCCCCCEEEEEC-C------------EEC-----CCCCHHHHHHHHHhC---CC-cEEEEEEECCC
Confidence 34499999999886 2 122 11 24666666653 33 89999998775
No 213
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=46.34 E-value=21 Score=28.04 Aligned_cols=48 Identities=19% Similarity=0.253 Sum_probs=29.8
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
..-|++||+|.+|. + ..+.. -.-..+.+.|++.- ..+.|.+.|+|+..
T Consensus 45 ~aGL~~GD~I~~vn-g------------~~v~~---~~~~~~~~~l~~~~--~g~~v~l~v~R~g~ 92 (96)
T 1ujv_A 45 CPGLCEGDLIVEIN-Q------------QNVQN---LSHTEVVDILKDCP--IGSETSLIIHRGSG 92 (96)
T ss_dssp STTCCSSCEEEEET-T------------EECSS---CCHHHHHHHHHHSC--TTSEEEEEEECCSS
T ss_pred cCCCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHcCC--CCCEEEEEEEECCC
Confidence 46799999999986 2 12200 01145666665431 13489999999875
No 214
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=46.21 E-value=22 Score=28.24 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=26.7
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCccc
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEE 104 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~ 104 (488)
+.|++||+|.+|. | ..+.. -.-..+.++|++ .. ..|.+.|.|+...
T Consensus 60 G~L~~GD~I~~vn-g------------~~v~~---~~~~~~~~~l~~---~~-~~v~l~v~R~~~~ 105 (116)
T 2dm8_A 60 GRLWAGDQILEVN-G------------VDLRN---SSHEEAITALRQ---TP-QKVRLVVYRDEAH 105 (116)
T ss_dssp TCCCTTCEEEEET-T------------EECSS---SCHHHHHHHHHT---CC-SEEEEEEECCSSC
T ss_pred CCCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHh---CC-CeEEEEEEeCCcc
Confidence 4599999998875 1 12200 001233344432 23 5899999998764
No 215
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=45.97 E-value=27 Score=26.99 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=26.4
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecC
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRG 101 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG 101 (488)
|++||+|.+|. + ..+.. -.-..+.++|++. .+ .|.+.|.||
T Consensus 55 L~~GD~I~~in-g------------~~v~~---~~~~~~~~~l~~~---~~-~v~l~v~~~ 95 (96)
T 2ego_A 55 LTPGDTIASVN-G------------LNVEG---IRHREIVDIIKAS---GN-VLRLETLYG 95 (96)
T ss_dssp CCTTCEEEEET-T------------EECTT---CCHHHHHHHHHHT---TT-EEEEEEECC
T ss_pred CCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHhC---CC-eEEEEEEEC
Confidence 99999999886 2 12200 0125667777654 33 788888886
No 216
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=45.91 E-value=59 Score=25.99 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=28.4
Q ss_pred cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 40 MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 40 m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
-|++||+|.+|. |..... . .-..+.+.+++.-......|.+.|+|+.-
T Consensus 60 GL~~GD~Il~in-g~~v~~-------~--------~~~~~~~~~~~~~~~~~~~v~l~v~R~~~ 107 (119)
T 2cs5_A 60 RLNEGDQVVLIN-GRDIAE-------H--------THDQVVLFIKASCERHSGELMLLVRPNAV 107 (119)
T ss_dssp CCCTTCEEEEET-TBCTTS-------S--------CHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred CCCCCCEEEEEC-CEECCC-------C--------CHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence 799999999886 211100 0 11345555555433222479999999864
No 217
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=45.87 E-value=12 Score=35.71 Aligned_cols=54 Identities=15% Similarity=0.319 Sum_probs=36.3
Q ss_pred EeeecCC-Ccceeeeeeecc--cceEEEEEeecCCCCCccch-hhHHHHHHHHHhcCcEEEEEeecCeeec
Q 011319 301 EIKLKEG-DSKLGFAISRTE--EGFIYISTVIDDDENIPSTR-SGLSILYKEAVSASKLLVVSRVSNQKVL 367 (488)
Q Consensus 301 Ei~~~~g-dtRlGfaIsRTE--EGFiyVsSV~~~~~g~~a~R-sGL~~Ly~~A~~a~kLLVISRv~g~kVl 367 (488)
.+.++-+ ...|||.|..-. +.-|||++|.. +.||++ +|| +.|-.++ .|.|+.|.
T Consensus 80 ~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~---gspA~~~aGL--------~~GD~Il--~VNG~~v~ 137 (263)
T 1z87_A 80 RVTVRKADAGGLGISIKGGRENKMPILISKIFK---GLAADQTEAL--------FVGDAIL--SVNGEDLS 137 (263)
T ss_dssp EECCCTTTTCCCCCEEEEETTTTEEEEEEECCT---TSHHHHCTTC--------CSSCEEE--EESSCBCT
T ss_pred EEEEEeCCCCCEeEEEeeccCCCCCEEEEEECC---CCHHHHhCCC--------CCCCEEE--EECCEECC
Confidence 3444443 478999998643 24599999996 799999 688 3454443 45665553
No 218
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=45.44 E-value=24 Score=29.86 Aligned_cols=55 Identities=20% Similarity=0.416 Sum_probs=39.6
Q ss_pred ceeeeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecce
Q 011319 296 GELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPW 369 (488)
Q Consensus 296 ~E~~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPw 369 (488)
-++.++|.++ ...+|||.+. +| +|++|.. ++||.++||+ .|..++ .+.|+++.-|
T Consensus 88 ~~~~v~l~~~-~~~~lG~~~~---~g--~v~~v~~---~s~a~~aGl~--------~GD~I~--~ing~~v~~~ 142 (166)
T 1w9e_A 88 FERTITMHKD-STGHVGFIFK---NG--KITSIVK---DSSAARNGLL--------TEHNIC--EINGQNVIGL 142 (166)
T ss_dssp TCEEEEEECC-TTSCCSEEEE---TT--EEEEECT---TSHHHHTTCC--------SSEEEE--EETTEECTTC
T ss_pred CcEEEEEecC-CCCcEeEEEe---CC--EEEEEcc---CCHHHHcCCC--------CCCEEE--EECCEECCCC
Confidence 4455666543 3578999887 56 8999985 7999999984 565443 7889888765
No 219
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=44.71 E-value=24 Score=28.17 Aligned_cols=49 Identities=10% Similarity=0.291 Sum_probs=31.4
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.+.|++||+|.+|. | ..+.. -.-..+.+.|++.-++.. .|.+.|.|...
T Consensus 49 aG~L~~GD~Il~Vn-g------------~~v~~---~~~~~~~~~l~~~~~~~~-~v~l~v~R~~~ 97 (108)
T 3cbz_A 49 DGRIEPGDMLLQVN-D------------MNFEN---MSNDDAVRVLRDIVHKPG-PIVLTVAKSGG 97 (108)
T ss_dssp HCCCCTTCEEEEET-T------------EETTS---CCHHHHHHHHHHHHTSSS-CEEEEEECCCC
T ss_pred cCCCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHhcccCCC-eEEEEEEeCCC
Confidence 45699999999986 2 11200 013567777776643333 59999988764
No 220
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=43.72 E-value=73 Score=26.63 Aligned_cols=42 Identities=14% Similarity=0.135 Sum_probs=27.1
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+++||+|.+|. | ..+ ..-..|.+.|.+... + ..|.+.| |++.
T Consensus 42 L~~GD~Il~In-G------------~~v-----~~~~dl~~~l~~~~~-g-~~v~l~V-R~g~ 83 (125)
T 2hga_A 42 LTPGLVIESIN-G------------MPT-----SNLTTYSAALKTISV-G-EVINITT-DQGT 83 (125)
T ss_dssp SCTTCEEEEET-T------------EEC-----SSHHHHHHHHTTCCT-T-CEEEEEE-TTEE
T ss_pred cCCCCEEEEEC-C------------EEc-----CCHHHHHHHHHhcCC-C-CEEEEEE-ECCE
Confidence 99999999885 2 223 222567777764322 3 3788899 7663
No 221
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=43.46 E-value=32 Score=27.42 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=27.4
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+++||+|.+|. |.. +.. ..-..+.+.|++ . .+.|.+.|+|+..
T Consensus 56 L~~GD~I~~in-g~~------------v~~---~~~~~~~~~l~~---~-g~~v~l~v~R~~~ 98 (114)
T 2edz_A 56 LLDGDRVLRIN-GVF------------VDK---EEHAQVVELVRK---S-GNSVTLLVLDGDS 98 (114)
T ss_dssp CCTTCEEEEES-SSB------------CSS---SCHHHHHHHHHH---T-CSEEEEEEECHHH
T ss_pred CCCCCEEEEEC-CEE------------CCC---CCHHHHHHHHHc---C-CCEEEEEEEECCc
Confidence 99999999886 211 100 011455666654 2 3489999999876
No 222
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=43.21 E-value=47 Score=25.71 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=24.8
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCch--hhHHHHHhhhhcCccceEEEEEecC
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGR--SGVQKILHGSFKNKETSILVRVRRG 101 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gk--sgl~k~L~k~~k~~e~si~vrVrRG 101 (488)
+++||+|.+|. | ..+ ... ..+.+.|++ .....+.+.|+|+
T Consensus 63 l~~GD~I~~in-g------------~~v-----~~~~~~~~~~~l~~---~~g~~v~l~v~R~ 104 (104)
T 3sfj_A 63 LQIGDKIMQVN-G------------WDM-----TMVTHDQARKRLTK---RSEEVVRLLVTRQ 104 (104)
T ss_dssp CCTTCEEEEET-T------------EEC-----TTCCHHHHHHHHTC---TTCSEEEEEEEEC
T ss_pred CCCCCEEEEEC-C------------EEC-----CCCCHHHHHHHHHh---CCCCEEEEEEEcC
Confidence 99999999886 1 112 111 355555554 2334788888874
No 223
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=43.20 E-value=33 Score=26.40 Aligned_cols=46 Identities=11% Similarity=0.290 Sum_probs=27.7
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.+.+++||+|.+|. | ..+.. ..-..+.+.|+ +....|.+.|+|++.
T Consensus 46 aG~l~~GD~I~~vn-g------------~~v~~---~~~~~~~~~l~----~~g~~v~l~v~R~~~ 91 (97)
T 1n7e_A 46 TGAIHIGDRILAIN-S------------SSLKG---KPLSEAIHLLQ----MAGETVTLKIKKQTD 91 (97)
T ss_dssp HTCCCTTCEEEEET-T------------EECTT---CCHHHHHHHHH----TCCSEEEEEEECCCC
T ss_pred CCCCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHH----cCCCeEEEEEEeCCC
Confidence 35599999998886 1 11200 01134555554 233489999999875
No 224
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=42.85 E-value=38 Score=27.07 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=27.2
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcccc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEF 105 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~~ 105 (488)
|++||+|.+|. | ..+ .....++..+. +.+ ....|.+.|+|+..++
T Consensus 60 L~~GD~Il~vn-g------------~~v-----~~~~~~~~~~~-~~~-~g~~v~l~v~r~~~~~ 104 (117)
T 1uit_A 60 LEYGDQLLEFN-G------------INL-----RSATEQQARLI-IGQ-QCDTITILAQYNPHVH 104 (117)
T ss_dssp CCTTCEECEET-T------------EET-----TTCCHHHHHHH-TTS-CCSEEEEEECCCSCCC
T ss_pred CCCCCEEEEEC-C------------EEC-----CCCCHHHHHHH-HHc-CCCeEEEEEEECCchh
Confidence 99999999886 1 112 11233444332 223 3448999999988744
No 225
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=42.85 E-value=28 Score=30.95 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=42.6
Q ss_pred CCcceeeeeee-----cccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceeccC
Q 011319 307 GDSKLGFAISR-----TEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFD 381 (488)
Q Consensus 307 gdtRlGfaIsR-----TEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~D 381 (488)
+...||+.+.- .++.-++|.+|.. ++||.++||+. -|-+++ .+.|+ | .+
T Consensus 93 ~~~~lGi~~~~~~~~~~~~~Gv~V~~V~~---~spA~~aGl~~-------~GD~I~--~ing~-v-------------~~ 146 (209)
T 3rle_A 93 GQGLLGVSIRFCSFDGANENVWHVLEVES---NSPAALAGLRP-------HSDYII--GADTV-M-------------NE 146 (209)
T ss_dssp SSSSSCEEEEEEECTTGGGSCEEEEEECT---TSHHHHHTCCT-------TTEEEE--EESSC-C-------------CS
T ss_pred ccCccceEEeecChhHccccceEEEEeCC---CChHHHCCCCC-------CCCEEE--ECCCE-e-------------CC
Confidence 34578988862 1224478999986 79999999852 033322 23442 2 23
Q ss_pred cccccccccccccccCceEEEEEE
Q 011319 382 TVSLSQKLSLHRHAKVPILLHVFL 405 (488)
Q Consensus 382 t~slsqkLslhr~a~~pI~lHvm~ 405 (488)
...+.+.|..| ...++.|.|+-
T Consensus 147 ~~~l~~~l~~~--~g~~v~l~v~r 168 (209)
T 3rle_A 147 SEDLFSLIETH--EAKPLKLYVYN 168 (209)
T ss_dssp SSCHHHHHHHT--TTSCEEEEEEE
T ss_pred HHHHHHHHHhC--CCCeEEEEEEE
Confidence 44555666555 56777777654
No 226
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=42.20 E-value=31 Score=27.08 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=27.3
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.+.|++||+|.+|. + .. +.. -.-..+.+.|++. ...|.+.|.|+.+
T Consensus 54 aG~L~~GD~I~~vn-g-~~-----------v~~---~~~~~~~~~l~~~----g~~v~l~v~R~~~ 99 (105)
T 1wha_A 54 AGTLQVGDRVLSIN-G-VD-----------VTE---ARHDHAVSLLTAA----SPTIALLLEREAG 99 (105)
T ss_dssp HSSCCTTCEEEEES-S-CB-----------CTT---CCHHHHHHHHTSC----CSCEEEEEEECCC
T ss_pred cCCCCCCCEEEEEC-C-EE-----------CCC---CCHHHHHHHHHcC----CCeEEEEEEECCC
Confidence 45699999998886 2 11 200 0023445555432 3479999998764
No 227
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=42.12 E-value=11 Score=34.73 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=28.3
Q ss_pred eeecCCCcceeeeeeeccc-ceEEEEEeecCCCCCccchhhHH
Q 011319 302 IKLKEGDSKLGFAISRTEE-GFIYISTVIDDDENIPSTRSGLS 343 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRTEE-GFiyVsSV~~~~~g~~a~RsGL~ 343 (488)
+.++.+..-|||.|..... +-++|.+|.. ++||.++||+
T Consensus 13 v~l~k~~~glG~~l~~~~~~~gv~V~~V~~---gSpA~~aGL~ 52 (216)
T 2krg_A 13 CTMKKGPSGYGFNLHSDKSKPGQFIRSVDP---DSPAEASGLR 52 (216)
T ss_dssp EEEECCSSSSCEEECCCSSSCSCBEEEECT---TSHHHHHTCC
T ss_pred EEEEeCCCCceEEEEecCCCCCeEEEEeCC---CChHHHcCCC
Confidence 3444555679999976543 3578999986 7899999873
No 228
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.06 E-value=26 Score=28.95 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=27.5
Q ss_pred cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCch--hhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 40 MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGR--SGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 40 m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gk--sgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
-|++||+|.+|. |.. + ..- ..|.++|.+. ...|.+.|+|+..
T Consensus 63 GL~~GD~Il~Vn-g~~------------v-----~~~~~~dl~~~l~~~----g~~v~l~v~R~g~ 106 (118)
T 2yub_A 63 AIHPGDRILEIN-GTP------------V-----RTLRVEEVEDAIKQT----SQTLQLLIEHDPV 106 (118)
T ss_dssp HCCTTCCEEEES-SSB------------T-----TTSCHHHHHHHHHCC----SSCEEEEEEECSS
T ss_pred CCCCCCEEEEEC-CEE------------C-----CCcCHHHHHHHHHhC----CCEEEEEEEECCE
Confidence 389999998886 211 2 111 4566666654 3378999998876
No 229
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=41.49 E-value=1e+02 Score=29.01 Aligned_cols=59 Identities=12% Similarity=0.089 Sum_probs=36.1
Q ss_pred EEEEEEccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEec
Q 011319 21 VLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRR 100 (488)
Q Consensus 21 V~~i~Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrR 100 (488)
++-.....++.++ ..-|++||+|.+|. | ..+ .....|.+.|.+. +.+ ..|.+.|+|
T Consensus 246 ~~V~~V~~~spA~----~aGL~~GD~I~~in-g------------~~v-----~~~~~l~~~l~~~-~~g-~~v~l~v~R 301 (318)
T 1te0_A 246 IVVNEVSPDGPAA----NAGIQVNDLIISVD-N------------KPA-----ISALETMDQVAEI-RPG-SVIPVVVMR 301 (318)
T ss_dssp EEEEEECTTSTTT----TTCCCTTCCEEEET-T------------EEC-----CCHHHHHHHHHTS-CTT-CEEEEEEES
T ss_pred EEEEEeCCCChHH----HCCCCCCCEEEEEC-C------------EEc-----CCHHHHHHHHHhc-CCC-CEEEEEEEE
Confidence 4434434444432 23599999999886 2 222 2235677777643 223 489999999
Q ss_pred Ccc
Q 011319 101 GAE 103 (488)
Q Consensus 101 G~~ 103 (488)
++.
T Consensus 302 ~g~ 304 (318)
T 1te0_A 302 DDK 304 (318)
T ss_dssp SSC
T ss_pred CCE
Confidence 886
No 230
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=41.35 E-value=37 Score=26.62 Aligned_cols=42 Identities=29% Similarity=0.278 Sum_probs=26.9
Q ss_pred ccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 41 LQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 41 ~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
|++||+|.+|. | ..+.. ..-..+.+.|++ + ..+.+.|+|+..
T Consensus 59 L~~GD~I~~in-g------------~~v~~---~~~~~~~~~l~~----~-~~v~l~v~r~~~ 100 (104)
T 1wi2_A 59 LQEGDQVLAVN-D------------VDFQD---IEHSKAVEILKT----A-REISMRVRFFSG 100 (104)
T ss_dssp CCTTCEEEEET-T------------EECSS---CCHHHHHHHHHH----S-SSEEEEEECCCC
T ss_pred CCCCCEEEEEC-C------------EECCC---CCHHHHHHHHhC----C-CEEEEEEEECCC
Confidence 99999999886 2 11200 012455666654 3 489999999875
No 231
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=40.64 E-value=12 Score=32.17 Aligned_cols=43 Identities=21% Similarity=0.420 Sum_probs=30.2
Q ss_pred ceeeeeeec----------ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeee
Q 011319 310 KLGFAISRT----------EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKV 366 (488)
Q Consensus 310 RlGfaIsRT----------EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kV 366 (488)
-|||.|.-- .+.-++|+.|.. +.||++ || +.|-.++ .|.|++|
T Consensus 3 g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~---~spA~~-gl--------~~GD~I~--~vng~~v 55 (195)
T 2qbw_A 3 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQP---EGPASK-LL--------QPGDKII--QANGYSF 55 (195)
T ss_dssp CSSEEEEECTTSCCCSSCTTCCSEEEEEECT---TSTTTT-TC--------CTTCEEE--EETTEEC
T ss_pred cccEEEECCcCCCCCccccCCCCEEEEEECC---CChHHh-CC--------CCCCEEE--EECCEEC
Confidence 478888753 234599999985 799999 97 4555443 5677665
No 232
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=39.45 E-value=81 Score=24.58 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=28.3
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGA 102 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~ 102 (488)
...|++||+|.+|. | .. +.- ..-..+.++|++.- ..+.|.+.|.|-.
T Consensus 53 ~ggl~~GD~I~~In-g-~~---------v~~-----~~~~~~~~~l~~~~--~g~~v~l~v~R~~ 99 (101)
T 2yt7_A 53 SGALSIGDRLTAIN-G-TS---------LVG-----LPLAACQAAVRETK--SQTSVTLSIVHCP 99 (101)
T ss_dssp GSSCCTTCEEEEES-S-CB---------CTT-----SCHHHHHHHHHHTT--TSSEEEEEECCCC
T ss_pred cCCCCCCCEEEEEC-C-EE---------CCC-----CCHHHHHHHHHhCC--CCCeEEEEEEeCC
Confidence 35699999999986 2 11 100 11256777776532 2347888888753
No 233
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=39.36 E-value=51 Score=26.07 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=27.9
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.+.|++||+|.+|. | .. +.. ..-..+.+.|++. ....|.+.|+|+.+
T Consensus 60 aG~L~~GD~Il~Vn-g-~~-----------v~~---~~~~~~~~~l~~~---~~~~v~l~v~R~~~ 106 (108)
T 2d92_A 60 SGGLLPGDRLVSVN-E-YC-----------LDN---TSLAEAVEILKAV---PPGLVHLGICSGPS 106 (108)
T ss_dssp HTCCCTTCEEEEES-S-CB-----------CTT---CCHHHHHHHHHHS---CSEEEEEEEECCCC
T ss_pred CCCCCCCCEEEEEC-C-EE-----------CCC---CCHHHHHHHHHhC---CCCeEEEEEEcCCC
Confidence 35699999998876 2 11 100 0113455555432 23479999999875
No 234
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=39.31 E-value=1.1e+02 Score=25.96 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=17.0
Q ss_pred EEEEEEccCCccccccccccccCCceeeeEe
Q 011319 21 VLSIDCLKGTSKADEWTADMLQTGDIVEEFT 51 (488)
Q Consensus 21 V~~i~Cv~gss~aeEW~e~m~l~GDIVE~~~ 51 (488)
|+-.. |...+.|+. -|++||+|.+|.
T Consensus 26 ~~V~~-v~~~spA~~----gl~~GD~I~~vn 51 (195)
T 2qbw_A 26 IFVTR-VQPEGPASK----LLQPGDKIIQAN 51 (195)
T ss_dssp EEEEE-ECTTSTTTT----TCCTTCEEEEET
T ss_pred EEEEE-ECCCChHHh----CCCCCCEEEEEC
Confidence 44444 444445554 499999999885
No 235
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=39.03 E-value=34 Score=34.37 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=35.7
Q ss_pred EEEccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 24 IDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 24 i~Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
|..|...+.|++= -|++||+|.+|. + ..+ ..-..|.++|++ ....+.+.|+|++.
T Consensus 390 V~~V~~gspA~~a---GL~~GD~I~~Vn-g------------~~v-----~~~~~~~~~l~~----~~~~v~l~v~R~g~ 444 (451)
T 3pv2_A 390 VVGASENSAGWRA---GIRPGDIIISAN-K------------KPV-----TDVKSLQTIAQE----KKKELLVQVLRGPG 444 (451)
T ss_dssp EEEECTTSHHHHH---TCCTTCEEEEET-T------------EEC-----CSHHHHHHHTTS----SCSCEEEEEEETTE
T ss_pred EEEECCCCHHHHc---CCCCCCEEEEEC-C------------EEC-----CCHHHHHHHHhc----CCCeEEEEEEECCE
Confidence 3345554444432 399999999985 1 223 222567777765 34489999999886
Q ss_pred c
Q 011319 104 E 104 (488)
Q Consensus 104 ~ 104 (488)
+
T Consensus 445 ~ 445 (451)
T 3pv2_A 445 S 445 (451)
T ss_dssp E
T ss_pred E
Confidence 3
No 236
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=37.78 E-value=33 Score=27.87 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=29.1
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.+.|++||+|.+|. |.... . -.-..+.+.|++ ....|.+.|.|++.
T Consensus 62 aG~L~~GD~I~~vn-g~~v~---------~------~~~~~~~~~l~~----~~~~v~l~v~R~~~ 107 (129)
T 2dmz_A 62 NGHIQVNDKIVAVD-GVNIQ---------G------FANHDVVEVLRN----AGQVVHLTLVRRKT 107 (129)
T ss_dssp HTCCCSSCBEEEET-TBCCT---------T------CCHHHHHHHHHH----CCSSEEEEEEEESS
T ss_pred cCCCCCCCEEEEEC-CEECC---------C------CCHHHHHHHHHc----CCCeEEEEEEeCCc
Confidence 34599999998886 21110 0 012566677765 33489999998875
No 237
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=37.57 E-value=37 Score=27.23 Aligned_cols=54 Identities=20% Similarity=0.118 Sum_probs=30.8
Q ss_pred EccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 26 CLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 26 Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.|...+.|+ ..|++||+|.+|. | .. +.. -.-..+...|++ ..+.|.+.|.|...
T Consensus 52 ~V~~~spA~----~gL~~GD~I~~Vn-g-~~-----------v~~---~~~~~~~~~l~~----~~~~v~l~v~R~~~ 105 (117)
T 2csj_A 52 DVLPGGPAD----GLLQENDRVVMVN-G-TP-----------MED---VLHSFAVQQLRK----SGKIAAIVVKRPRK 105 (117)
T ss_dssp EECTTSSHH----HHBCTTCEEEEES-S-CB-----------CBT---CCHHHHHHHHHH----SCSEEEEEEEEEEE
T ss_pred EECCCCccc----ccCCCCCEEEEEC-C-EE-----------CCC---cCHHHHHHHHhc----CCCeEEEEEEECCc
Confidence 344444442 6799999998886 2 11 100 001234445554 23489999998764
No 238
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=37.26 E-value=48 Score=35.13 Aligned_cols=37 Identities=35% Similarity=0.528 Sum_probs=27.8
Q ss_pred eeecCCCcceeeeeeecc-cceEEEEEeecCCCCCccchhh
Q 011319 302 IKLKEGDSKLGFAISRTE-EGFIYISTVIDDDENIPSTRSG 341 (488)
Q Consensus 302 i~~~~gdtRlGfaIsRTE-EGFiyVsSV~~~~~g~~a~RsG 341 (488)
+.++.+...|||.|...+ .+-|+|++|.. |.||+|+|
T Consensus 311 v~l~~~~~~lG~~i~~~~~~~gv~V~~V~~---gs~A~~aG 348 (721)
T 2xkx_A 311 IVIHRGSTGLGFNIVGGEDGEGIFISFILA---GGPADLSG 348 (721)
T ss_pred EEEEECCCCccEEEeccCCCCCeEEEEeCC---CChHHhcC
Confidence 334445567999987654 35689999996 79999999
No 239
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=37.23 E-value=42 Score=27.31 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=28.7
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.+.|++||+|.+|. |...... ..+ ..+.++|++ ....|.+.|.|+..
T Consensus 70 aG~L~~GD~Il~in-g~~v~~~------~~~--------~~~~~~l~~----~~~~v~l~v~r~~~ 116 (128)
T 2db5_A 70 DQRLKENDQILAIN-HTPLDQN------ISH--------QQAIALLQQ----TTGSLRLIVAREPV 116 (128)
T ss_dssp TCCCCSSCBEEEES-SCBCSTT------SCH--------HHHHHHHHH----CCSEEEEEEEECCC
T ss_pred cCCCCCCCEEEEEC-CEECCCC------CCH--------HHHHHHHHc----CCCeEEEEEEcCCC
Confidence 44599999999986 2111000 112 455566654 23489999999875
No 240
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=37.22 E-value=35 Score=27.71 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=31.4
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
+-|++||+|.+|. | .. +.. ..-..+.+.|++..+...+.|.+.|.|...
T Consensus 60 ggL~~GD~Il~In-g-~~-----------v~~---~~~~~~~~~l~~~~~~~g~~v~l~v~r~~~ 108 (118)
T 1v6b_A 60 GGVVKGDEIMAIN-G-KI-----------VTD---YTLAEAEAALQKAWNQGGDWIDLVVAVCPP 108 (118)
T ss_dssp CSSCTTCEEEEES-S-CB-----------CTT---CBHHHHHHHHHHHHHHTCSEEEEEEECCCS
T ss_pred CCCCCCCEEEEEC-C-EE-----------CCC---CCHHHHHHHHHHhhhcCCCeEEEEEEeCCc
Confidence 4799999998876 2 11 100 012467777776654334589999999764
No 241
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=36.51 E-value=42 Score=27.01 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=28.1
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.+.|++||+|.+|. | ..+.. ..-..+..+|++ ....|.+.|+|+..
T Consensus 65 aG~L~~GD~Il~vn-g------------~~v~~---~~~~~~~~~l~~----~~~~v~l~v~R~~~ 110 (117)
T 1ujd_A 65 TGKLMEGMQVLEWN-G------------IPLTS---KTYEEVQSIISQ----QSGEAEICVRLDLN 110 (117)
T ss_dssp HSSCCTTCEEEEET-T------------EECTT---CCHHHHHHHHSC----CSSCEEEEEESSCC
T ss_pred cCCCCCCCEEEEEC-C------------EEcCC---CCHHHHHHHHhc----CCCEEEEEEEECCc
Confidence 35599999999986 2 12200 001344455544 33479999999876
No 242
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=35.65 E-value=56 Score=30.98 Aligned_cols=57 Identities=23% Similarity=0.385 Sum_probs=35.3
Q ss_pred cEEEEEEccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEe
Q 011319 20 TVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVR 99 (488)
Q Consensus 20 ~V~~i~Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVr 99 (488)
+|+...-..++. |+ .--|++||||.+|. | ..+ ..-..|.++|++ + ..|.+.|+
T Consensus 257 gv~V~~V~~~sp-A~---~aGl~~GDvI~~in-g------------~~v-----~~~~~l~~~l~~----~-~~v~l~v~ 309 (325)
T 1lcy_A 257 GVLIHKVILGSP-AH---RAGLRPGDVILAIG-E------------QMV-----QNAEDVYEAVRT----Q-SQLAVQIR 309 (325)
T ss_dssp CEEEEEECTTSH-HH---HHTCCTTCEEEEET-T------------EEC-----CSHHHHHHHHTT----C-SSEEEEEE
T ss_pred CeEEEEeCcCCh-HH---HCCCCCCCEEEEEC-C------------EEc-----CCHHHHHHHHhC----C-CeEEEEEE
Confidence 455444334443 32 23499999999886 2 223 223567777764 3 48999999
Q ss_pred cCcc
Q 011319 100 RGAE 103 (488)
Q Consensus 100 RG~~ 103 (488)
|++.
T Consensus 310 R~g~ 313 (325)
T 1lcy_A 310 RGRE 313 (325)
T ss_dssp ETTE
T ss_pred ECCE
Confidence 9986
No 243
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=35.62 E-value=17 Score=36.45 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=32.9
Q ss_pred cceeeeeeecccc----eEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecce
Q 011319 309 SKLGFAISRTEEG----FIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPW 369 (488)
Q Consensus 309 tRlGfaIsRTEEG----FiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPw 369 (488)
.-+||.+.+..+| |++|.+|.. ++||.++||+ +|-. |=.|.|++|.-|
T Consensus 74 ~G~~~~l~~~~~~~~~~~~~V~~V~~---gsPA~~AGL~--------~GD~--I~~InG~~v~~~ 125 (403)
T 3k50_A 74 YGFDYTLYKVLDNDTAYNALISYVVP---GSPAEEAGLQ--------RGHW--IMMMNGDYITKK 125 (403)
T ss_dssp CSEEEEEEECTTCSSCEEEEEEEECT---TSHHHHTTCC--------TTCE--EEEETTBCBCTT
T ss_pred cceEEEEEEcCCCCcceeEEEEEeCC---CChHHHcCCC--------CCCE--EEEECCEEccch
Confidence 3355555555443 799999996 7999999984 5553 446778776544
No 244
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=35.42 E-value=11 Score=25.54 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=7.7
Q ss_pred eeEEEeeecc
Q 011319 284 VRAVRLWYAP 293 (488)
Q Consensus 284 VravRLWy~P 293 (488)
-+|.||||--
T Consensus 12 ~kgarlwyvg 21 (26)
T 1gff_3 12 SKGARLWYVG 21 (26)
T ss_pred CCceEEEEec
Confidence 3689999953
No 245
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=35.42 E-value=86 Score=31.16 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=34.2
Q ss_pred EccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCccc
Q 011319 26 CLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEE 104 (488)
Q Consensus 26 Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~ 104 (488)
.|...+.|++ .-|++||+|.+|. | ..+ ..-..+.++|++ ....+.+.|+|++.+
T Consensus 369 ~V~~~spA~~---aGL~~GD~I~~vn-g------------~~v-----~~~~~~~~~l~~----~~~~v~l~v~R~g~~ 422 (436)
T 4a8c_A 369 EVVKGSPAAQ---AGLQKDDVIIGVN-R------------DRV-----NSIAEMRKVLAA----KPAIIALQIVRGNES 422 (436)
T ss_pred EeCCCCHHHH---cCCCCCCEEEEEC-C------------EEC-----CCHHHHHHHHHh----CCCeEEEEEEECCEE
Confidence 3444444443 2399999999986 2 222 122567777766 223799999999863
No 246
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=35.04 E-value=1.5e+02 Score=27.66 Aligned_cols=44 Identities=9% Similarity=0.187 Sum_probs=28.8
Q ss_pred cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEec-Ccc
Q 011319 40 MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRR-GAE 103 (488)
Q Consensus 40 m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrR-G~~ 103 (488)
-|++||+|..|. | ..+ ..-..|.+.|.+. +.++ .|.+.|.| ++.
T Consensus 259 Gl~~GD~I~~in-g------------~~v-----~~~~~l~~~l~~~-~~g~-~v~l~v~R~~g~ 303 (324)
T 1y8t_A 259 GVPKGVVVTKVD-D------------RPI-----NSADALVAAVRSK-APGA-TVALTFQDPSGG 303 (324)
T ss_dssp TCCTTCEEEEET-T------------EEC-----CSHHHHHHHHHTS-CTTC-EEEEEEECSSCC
T ss_pred CCCCCCEEEEEC-C------------EEC-----CCHHHHHHHHHhc-CCCC-EEEEEEEECCCC
Confidence 599999999885 2 223 2224677777643 2234 89999999 654
No 247
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=34.45 E-value=25 Score=29.77 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=28.6
Q ss_pred eeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHH
Q 011319 299 AIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLS 343 (488)
Q Consensus 299 ~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~ 343 (488)
.+++.++-|+.-|||.|.-...| .+|..|.+ |+.++||+
T Consensus 13 ~~~V~L~Kg~~G~GFsI~~~~~g-~~V~~I~~-----~~~~aGL~ 51 (113)
T 3soe_A 13 LVTIPLIKGPKGFGFAIADSPTG-QKVKMILD-----SQWCQGLQ 51 (113)
T ss_dssp EEEEEEECBTTBSSEEEEEETTE-EEEEEESC-----GGGSTTCC
T ss_pred EEEEEEEECCCcccEEEeCCCCC-cEEEEecC-----hHHhCCCC
Confidence 36777888889999999665556 45888875 35667763
No 248
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=34.45 E-value=62 Score=28.26 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=31.8
Q ss_pred EEEccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCc--hhhHHHHHhhhhcCccceEEEEEecC
Q 011319 24 IDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNG--RSGVQKILHGSFKNKETSILVRVRRG 101 (488)
Q Consensus 24 i~Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~g--ksgl~k~L~k~~k~~e~si~vrVrRG 101 (488)
|..|...+.|+. .+ +++||+|.+|. | ..+ .+ -..+.+.|++ ...|.+.|+|+
T Consensus 114 V~~V~~gspA~~--aG-L~~GD~Il~vn-g------------~~v-----~~~~~~~~~~~l~~-----~~~v~l~v~r~ 167 (192)
T 3k1r_A 114 ISHLIKGGQADS--VG-LQVGDEIVRIN-G------------YSI-----SSCTHEEVINLIRT-----EKTVSIKVRHI 167 (192)
T ss_dssp EEEECTTSHHHH--TT-CCTTEEEEEET-T------------EEC-----TTCCHHHHHHHHTS-----SSEEEEEEEEC
T ss_pred EEEECCCChHHH--cC-CCCCCEEEEEC-C------------EEC-----CCCCHHHHHHHHcC-----CCeEEEEEEEC
Confidence 334444444433 23 99999999986 2 122 11 2344444443 34899999998
Q ss_pred cc
Q 011319 102 AE 103 (488)
Q Consensus 102 ~~ 103 (488)
+.
T Consensus 168 g~ 169 (192)
T 3k1r_A 168 GL 169 (192)
T ss_dssp CE
T ss_pred Cc
Confidence 74
No 249
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=33.51 E-value=34 Score=33.24 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=32.3
Q ss_pred cceeeeeeec--ccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecce
Q 011319 309 SKLGFAISRT--EEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPW 369 (488)
Q Consensus 309 tRlGfaIsRT--EEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPw 369 (488)
..+|+.+... +++.++|.+|.. ++||.++||+ .|-.++ .|.|++|--|
T Consensus 85 ~giG~~~~~~~~~~~~~~V~~v~~---~spA~~aGl~--------~GD~I~--~Ing~~v~~~ 134 (388)
T 1fc6_A 85 TGVGLEITYDGGSGKDVVVLTPAP---GGPAEKAGAR--------AGDVIV--TVDGTAVKGM 134 (388)
T ss_dssp BBCSEEEEECTTCSSCEEEEEECT---TSHHHHTTCC--------TTCEEE--EETTEECTTC
T ss_pred EEEEEEEEEeecCCCcEEEEEeCC---CChHHHcCCC--------CCCEEE--EECCEECCCC
Confidence 3566766654 357789999996 7999999973 444433 5666665554
No 250
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=33.40 E-value=75 Score=26.91 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=28.8
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecC
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRG 101 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG 101 (488)
.+.|++||+|.+|. |. . +.- ..-..+.+.|++... + +.|.+.|.|+
T Consensus 65 aG~L~~GD~Il~Vn-G~-~---------v~~-----~s~~d~~~~l~~~~~-G-~~v~l~V~R~ 110 (126)
T 1wif_A 65 DGILQPGDVLISVG-HA-N---------VLG-----YTLREFLKLLQNITI-G-TVLQIKAYRG 110 (126)
T ss_dssp CSSSCTTCBEEEES-SS-C---------CTT-----CCHHHHHHHHTSCCS-S-CEEEEEEESS
T ss_pred cCCCCCCCEEEEEC-CE-E---------cCC-----CCHHHHHHHHhcCCC-C-CEEEEEEEEC
Confidence 45599999999886 21 1 100 012566777765322 3 4899999998
No 251
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=33.06 E-value=9.2 Score=37.66 Aligned_cols=56 Identities=18% Similarity=0.439 Sum_probs=36.4
Q ss_pred eEeeecCCCcceeeeeeecccc----eEEEEEeecCCCCCccchhh-HHHHHHHHHhcCcEEEEEeecCeeecce
Q 011319 300 IEIKLKEGDSKLGFAISRTEEG----FIYISTVIDDDENIPSTRSG-LSILYKEAVSASKLLVVSRVSNQKVLPW 369 (488)
Q Consensus 300 lEi~~~~gdtRlGfaIsRTEEG----FiyVsSV~~~~~g~~a~RsG-L~~Ly~~A~~a~kLLVISRv~g~kVlPw 369 (488)
++|.-++| ..|||.|.-.+.| -++|++|.. |+||+++| |. .|-.++ .|.|+.|--|
T Consensus 208 V~i~k~~g-e~lG~~i~~~~~g~~~~g~~V~~V~~---gspA~~aG~L~--------~GD~Il--~VnG~~v~~~ 268 (388)
T 3suz_A 208 LQLEKHKG-EILGVVVVESGWGSILPTVILANMMN---GGPAARSGKLS--------IGDQIM--SINGTSLVGL 268 (388)
T ss_dssp EEECCCSS-CCCCCCCBCC---CCSCCCBCCCCCC---SSHHHHTCCCC--------TTCEEE--EETTEECSSC
T ss_pred EEEECCCC-CceeEEEEecCCCCcCCCEEEEeeCC---CCHHHHcCCCC--------CCCEEE--EECCEEccCC
Confidence 34444444 4799999886656 478999985 79999999 73 455433 5777776544
No 252
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=32.73 E-value=72 Score=25.22 Aligned_cols=41 Identities=32% Similarity=0.559 Sum_probs=27.1
Q ss_pred cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcc
Q 011319 40 MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 40 m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
-+++||+|.+|. | ..+ ..-..+.+.|+ .++ .+.+.|.|++.
T Consensus 52 Gl~~GD~I~~in-g------------~~v-----~~~~~~~~~l~----~g~-~v~l~v~R~g~ 92 (112)
T 2p3w_A 52 GIQDGDIIVKVN-G------------RPL-----VDSSELQEAVL----TES-PLLLEVRRGND 92 (112)
T ss_dssp TCCTTCEEEEET-T------------EEC-----CSHHHHHHHHH----HCS-SEEEEEEETTE
T ss_pred CCCCCCEEEEEC-C------------EEC-----CCHHHHHHHHh----CCC-eEEEEEEECCE
Confidence 499999999886 2 222 11245666662 233 78999999875
No 253
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.54 E-value=46 Score=26.97 Aligned_cols=61 Identities=11% Similarity=0.096 Sum_probs=37.5
Q ss_pred ccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHH-----------HHHhhhhcCccceEEEEEec
Q 011319 33 ADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQ-----------KILHGSFKNKETSILVRVRR 100 (488)
Q Consensus 33 aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~-----------k~L~k~~k~~e~si~vrVrR 100 (488)
+.+|....+..|||+++.-.+-.+- |.|+.+.. +.++..||- +..++.|+-++ .|.|+|-+
T Consensus 2 ~~~~~~~~~~vG~i~~G~V~~v~~f-----G~FV~l~~-~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd-~V~VkV~~ 73 (103)
T 2eqs_A 2 SSGSSGEEPTIGDIYNGKVTSIMQF-----GCFVQLEG-LRKRWEGLVHISELRREGRVANVADVVSKGQ-RVKVKVLS 73 (103)
T ss_dssp CCCCCCSSCCTTCEEEEEEEEECSS-----CEEEEECS-SSSCCEEEECGGGTSSSSCCCCHHHHCCTTC-EEEEEEEE
T ss_pred ccccccccCCCCCEEEEEEEEEecc-----EEEEEEcC-CCCCeEEEEEHHHCCCCcccCCcccEeCCCC-EEEEEEEE
Confidence 4578999999999999987665442 67787732 111344442 12234566566 66666654
No 254
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=32.44 E-value=63 Score=28.66 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=34.8
Q ss_pred cccC-CceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcccceeeeEEeecC
Q 011319 40 MLQT-GDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFAELQACIVPE 115 (488)
Q Consensus 40 m~l~-GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~~~eL~AciVpe 115 (488)
-+++ ||+|.+|. + .. ..-..|.+.|++. .++ .|.+.|.|++.+ ..+...+.|+
T Consensus 129 Gl~~~GD~I~~in-g-~v-----------------~~~~~l~~~l~~~--~g~-~v~l~v~r~~~~-~~~~v~l~p~ 182 (209)
T 3rle_A 129 GLRPHSDYIIGAD-T-VM-----------------NESEDLFSLIETH--EAK-PLKLYVYNTDTD-NCREVIITPN 182 (209)
T ss_dssp TCCTTTEEEEEES-S-CC-----------------CSSSCHHHHHHHT--TTS-CEEEEEEETTTT-EEEEEEECCC
T ss_pred CCCCCCCEEEECC-C-Ee-----------------CCHHHHHHHHHhC--CCC-eEEEEEEECCce-EEEEEEEEec
Confidence 4899 99999984 2 11 1125788888875 233 799999776542 2456677774
No 255
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=32.21 E-value=14 Score=36.38 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=1.3
Q ss_pred ceeeeEeeecCCCcceeeeeeecccceEEEEEeecCCCCCccchhhHH
Q 011319 296 GELAIEIKLKEGDSKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLS 343 (488)
Q Consensus 296 ~E~~lEi~~~~gdtRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~ 343 (488)
.+..+.+........|||.+.. | +|.+|.. +.||.|+||+
T Consensus 295 ~~~~v~l~~~~~~~~lG~~i~~---g--~I~~V~~---gs~A~~aGL~ 334 (388)
T 3suz_A 295 PVTTVLIKRPDLKYQLGFSVQN---G--IICSLMR---GGIAERGGVR 334 (388)
T ss_dssp SCC---------------------------------------------
T ss_pred ccceeeEeecCCCCccceEEec---C--EEEEeec---CCHHHHcCCC
Confidence 3455555555556678887753 3 7888885 7999999974
No 256
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=32.18 E-value=29 Score=36.44 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=46.2
Q ss_pred cceeeeeeecccceEEEEEeecCCCCCccchhhHHHHHHHHHhcCcEEEEEeecCeeecceeeecCCceeccCccccccc
Q 011319 309 SKLGFAISRTEEGFIYISTVIDDDENIPSTRSGLSILYKEAVSASKLLVVSRVSNQKVLPWIVSSTGAVRCFDTVSLSQK 388 (488)
Q Consensus 309 tRlGfaIsRTEEGFiyVsSV~~~~~g~~a~RsGL~~Ly~~A~~a~kLLVISRv~g~kVlPwmVsSsGaIrC~Dt~slsqk 388 (488)
..||+.+....+ -+.|.+|.+ ++||.++||. +|-.+ =.|.|++|- + ..|.+.
T Consensus 485 ~~lG~~~~~~~~-gv~V~~V~~---~spA~~AGL~--------~GD~I--~aInG~~v~-~-------------~~l~~~ 536 (597)
T 4fgm_A 485 VNFGAKYKASPQ-GLDVLNVYH---DESAYHAGLS--------AGDKI--IAIDHLQAT-E-------------QSVKRI 536 (597)
T ss_dssp CCCSEEEEEETT-EEEEEEECT---TSHHHHHTCC--------TTCEE--EEETTEECC-T-------------TTHHHH
T ss_pred cccceEEeccCC-eEEEEEeCC---CChHHHCCCC--------CCCEE--EEECCEECC-H-------------HHHHHH
Confidence 368887765444 488999996 7999999994 56543 467887762 1 245555
Q ss_pred ccccccccCceEEEEEE
Q 011319 389 LSLHRHAKVPILLHVFL 405 (488)
Q Consensus 389 Lslhr~a~~pI~lHvm~ 405 (488)
|..+ ....+|.|+|.=
T Consensus 537 l~~~-~~g~~v~l~v~R 552 (597)
T 4fgm_A 537 LERY-IPGDTVTIHAFR 552 (597)
T ss_dssp HTTC-CTTCEEEEEEEE
T ss_pred HHhc-CCCCEEEEEEEE
Confidence 5544 356888888863
No 257
>1j2r_A Hypothetical isochorismatase family protein YECD; parallel beta-sheet 3-2-1-4-5-6, alpha-beta-alpha motif, TET structural genomics; 1.30A {Escherichia coli} SCOP: c.33.1.3
Probab=32.17 E-value=66 Score=28.08 Aligned_cols=46 Identities=11% Similarity=0.314 Sum_probs=33.8
Q ss_pred eeeecccccccccc--ccccHHHHHHHHHHHHHhhhcCCCcEEEEeec
Q 011319 192 SMLLLPKASDVVAS--RYNDVEDTLARANAWLNASQATGVPIVFMNIQ 237 (488)
Q Consensus 192 SiL~lP~a~d~~~~--~ynsvEdT~ARa~AWlsAsqaSGVPIvFvNIQ 237 (488)
.||++=++.+-... .....++.+++++..+.++.+.|+||+|+.+|
T Consensus 21 ALlvID~Q~~f~~~~~~~~~~~~~i~~i~~ll~~ar~~g~pVi~t~~~ 68 (199)
T 1j2r_A 21 ALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVG 68 (199)
T ss_dssp EEEEECCSTTTGGGCCBSSCHHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEEecchhhhCCCcccccHHHHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 45555555442211 12457889999999999999999999999976
No 258
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=30.45 E-value=93 Score=32.69 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=44.9
Q ss_pred ccEEEEEEccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCC-CchhhHHHHHhhhhcCccceEEEE
Q 011319 19 YTVLSIDCLKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFK-NGRSGVQKILHGSFKNKETSILVR 97 (488)
Q Consensus 19 ~~V~~i~Cv~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk-~gksgl~k~L~k~~k~~e~si~vr 97 (488)
.+|+...-..++.+ +. . +++||||-+|. |...... - .-||. ..+..|+.++.+. +-++ .|.|+
T Consensus 277 ~Gv~V~~V~~~spA-~~---a-l~~GDvI~~id-g~~V~~~------g--~~~~~~~~~~~l~~~v~~~-~~Gd-~v~l~ 340 (539)
T 4fln_A 277 EGVLVRRVEPTSDA-SK---V-LKEGDVIVSFD-DLHVGCE------G--TVPFRSSERIAFRYLISQK-FAGD-IAEIG 340 (539)
T ss_dssp BCEEEEEECTTSGG-GG---T-CCTTCEEEEET-TEECBSS------S--EEECSTTCEEETHHHHHTS-CTTC-EEEEE
T ss_pred CceeeecccCCChH-Hh---C-ccCCCEEEEEC-CEEeCcC------C--eeccccchhHHHHHHHHcC-CCCC-EEEEE
Confidence 46766665566654 32 3 99999998886 1111000 0 11332 3345677777643 3355 89999
Q ss_pred EecCcccceeeeEEe
Q 011319 98 VRRGAEEFAELQACI 112 (488)
Q Consensus 98 VrRG~~~~~eL~Aci 112 (488)
|-|++.+. ++...+
T Consensus 341 v~R~Gk~~-~v~Vtl 354 (539)
T 4fln_A 341 IIRAGEHK-KVQVVL 354 (539)
T ss_dssp EEETTEEE-EEEEEC
T ss_pred EEECCEEE-EEEEEE
Confidence 99998742 554443
No 259
>3txy_A Isochorismatase family protein family; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.70A {Burkholderia thailandensis} SCOP: c.33.1.0
Probab=30.38 E-value=42 Score=29.83 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCcEEEEee
Q 011319 208 NDVEDTLARANAWLNASQATGVPIVFMNI 236 (488)
Q Consensus 208 nsvEdT~ARa~AWlsAsqaSGVPIvFvNI 236 (488)
...++.+++++..+.++.+.|+||+|++.
T Consensus 33 ~~~~~~i~~i~~Li~~ar~~g~pVi~t~~ 61 (199)
T 3txy_A 33 QSGGDVVAKTAELANAFRARKLPVIFVHT 61 (199)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 35789999999999999999999999984
No 260
>3ot4_A Putative isochorismatase; NICF, maleamate hydrolase, hydrol; 2.40A {Bordetella bronchiseptica} PDB: 3uao_A
Probab=30.04 E-value=35 Score=31.64 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCcEEEEeech
Q 011319 208 NDVEDTLARANAWLNASQATGVPIVFMNIQT 238 (488)
Q Consensus 208 nsvEdT~ARa~AWlsAsqaSGVPIvFvNIQT 238 (488)
...++.+++++..+.++.+.|+||||+..|-
T Consensus 65 ~~~~~vv~~i~~Ll~~aR~~g~pVI~t~~~~ 95 (236)
T 3ot4_A 65 GNIAAAIETTRTVLAAARERGWAVAHSRIVY 95 (236)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCEEEEEEECB
T ss_pred cCHHHHHHHHHHHHHHHHHcCCeEEEEEecc
Confidence 4578999999999999999999999999764
No 261
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=29.65 E-value=91 Score=25.64 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=14.1
Q ss_pred hHHHHHhhhhcCccceEEEEEecCcc
Q 011319 78 GVQKILHGSFKNKETSILVRVRRGAE 103 (488)
Q Consensus 78 gl~k~L~k~~k~~e~si~vrVrRG~~ 103 (488)
.+.+.|+ +..++.|.+.|+|...
T Consensus 97 ~~~~~l~---~~~~~~v~l~v~r~~~ 119 (130)
T 1i16_A 97 EAWNIIK---ALPDGPVTIVIRRKSL 119 (130)
T ss_dssp HHHHHHH---TSCSSEEEEEEEEESS
T ss_pred HHHHHHH---hCCCceEEEEEEeCCC
Confidence 3444444 3345579999988754
No 262
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=27.55 E-value=33 Score=32.57 Aligned_cols=30 Identities=27% Similarity=0.182 Sum_probs=22.6
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCC
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFK 73 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk 73 (488)
+.|.+||||++.-++-... +-|+.+..||.
T Consensus 70 y~p~~GDiV~G~V~~v~~~-----ga~VdI~~~~~ 99 (251)
T 2je6_I 70 YYPKINDIVIGLVEDVEIY-----GWVVDIKAPYK 99 (251)
T ss_dssp CCCCTTCEEEEEEEEECSS-----EEEEECSSSSC
T ss_pred cCCCCCCEEEEEEEEEeCc-----eEEEEcCCCeE
Confidence 6899999999988765543 67777766654
No 263
>3oqp_A Putative isochorismatase; catalytic triad, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.22A {Burkholderia xenovorans}
Probab=27.36 E-value=65 Score=29.19 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=26.2
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCcEEEEee
Q 011319 208 NDVEDTLARANAWLNASQATGVPIVFMNI 236 (488)
Q Consensus 208 nsvEdT~ARa~AWlsAsqaSGVPIvFvNI 236 (488)
...++.+++++..+.++.+.|+||+|+.-
T Consensus 28 ~~~~~~i~~i~~Ll~~ar~~g~pVi~t~~ 56 (211)
T 3oqp_A 28 PDVQSSLANIARAMDAARAAGVPVVIVQN 56 (211)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 56789999999999999999999999873
No 264
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=25.76 E-value=97 Score=29.63 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=29.4
Q ss_pred cccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCccc
Q 011319 40 MLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEE 104 (488)
Q Consensus 40 m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~ 104 (488)
.++.||||.+|. |.. + .....|.+.|.+. +.++ .|.|.|.|++.+
T Consensus 279 ~l~~GDvI~~in-g~~------------v-----~~~~dl~~~l~~~-~~g~-~v~l~v~R~g~~ 323 (348)
T 3qo6_A 279 RLVLGDIITSVN-GTK------------V-----SNGSDLYRILDQC-KVGD-EVTVEVLRGDHK 323 (348)
T ss_dssp CEECCCEECEET-TBC------------C-----SSSHHHHHHHTTC-CTTC-EEEEEEECSSSE
T ss_pred CCCCCCEEEEEC-CEE------------e-----CCHHHHHHHHHhC-CCcC-EEEEEEEECCEE
Confidence 445599999885 211 2 2236788887642 3244 899999998863
No 265
>3eef_A N-carbamoylsarcosine amidase related protein; structural genomics, protein structure initiative, midwest center for structural genomics; 2.35A {Thermoplasma acidophilum}
Probab=24.40 E-value=58 Score=28.29 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHHHhhhcCCCcEEEEee
Q 011319 209 DVEDTLARANAWLNASQATGVPIVFMNI 236 (488)
Q Consensus 209 svEdT~ARa~AWlsAsqaSGVPIvFvNI 236 (488)
..++.+.+.+..+.++.+.|+||+|++.
T Consensus 23 ~~~~~i~~i~~l~~~ar~~g~pVi~t~~ 50 (182)
T 3eef_A 23 EAMKTVGPARKVIETFRRSGLPVVYVND 50 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4678899999999999999999999984
No 266
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=23.30 E-value=99 Score=27.19 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=26.8
Q ss_pred cccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecC
Q 011319 38 ADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRG 101 (488)
Q Consensus 38 e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG 101 (488)
.+.|++||+|.+|. | ..+.. .....+.+.|++ ..+.|.+.|+|+
T Consensus 127 aG~L~~GD~Il~VN-G------------~~v~~---~~~~~~~~~l~~----~g~~v~L~V~R~ 170 (170)
T 3egg_C 127 DGRIQVNDLLVEVD-G------------TSLVG---VTQSFAASVLRN----TKGRVRFMIGRE 170 (170)
T ss_dssp HCCCCTTCEEEEET-T------------EECTT---BCHHHHHHHHHH----CCSEEEEEEEEC
T ss_pred CCCCCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHc----CCCEEEEEEEeC
Confidence 45699999998886 1 11200 011445555554 234899999985
No 267
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=22.11 E-value=11 Score=25.53 Aligned_cols=9 Identities=44% Similarity=1.202 Sum_probs=7.1
Q ss_pred eEEEeeecc
Q 011319 285 RAVRLWYAP 293 (488)
Q Consensus 285 ravRLWy~P 293 (488)
+|.||||--
T Consensus 12 kgarlwyvg 20 (26)
T 1m06_J 12 KGARLWYVG 20 (26)
T ss_dssp SSSCCCCSS
T ss_pred CceEEEEEc
Confidence 678999963
No 268
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=21.42 E-value=57 Score=30.33 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=23.0
Q ss_pred ccccCCceeeeEeecCCCCCCCCCCceeeeecCCC
Q 011319 39 DMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFK 73 (488)
Q Consensus 39 ~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk 73 (488)
+.|..||||++.-++-... +-|+.+..||.
T Consensus 62 y~p~~GDiV~G~V~~v~~~-----~~~V~I~~~~~ 91 (235)
T 2z0s_A 62 YVPQAGDVVIGLIQSVGIM-----NWFVDINSPYV 91 (235)
T ss_dssp CCCCTTCCEEEEEEEECSS-----EEEEECSSSSC
T ss_pred cCCCCCCEEEEEEEEEeCC-----eEEEEeCCCeE
Confidence 6899999999988766553 67777766664
No 269
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=21.07 E-value=77 Score=28.20 Aligned_cols=29 Identities=21% Similarity=0.483 Sum_probs=25.7
Q ss_pred ccHHHHHHHHHHHHHhhhcCCCcEEEEee
Q 011319 208 NDVEDTLARANAWLNASQATGVPIVFMNI 236 (488)
Q Consensus 208 nsvEdT~ARa~AWlsAsqaSGVPIvFvNI 236 (488)
...++.+.+++..+.++.+.|+||+|+..
T Consensus 43 ~~~~~~i~~i~~l~~~ar~~g~pVi~t~~ 71 (197)
T 4h17_A 43 SGMDEAVANIARLLDAARKSGRPIIHVRH 71 (197)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 35688999999999999999999999874
No 270
>1im5_A 180AA long hypothetical pyrazinamidase/nicotinamidase; pyrazinamide, tuberculosis, PZA resistance, drug resistance, metal ION catalysis; 1.65A {Pyrococcus horikoshii} SCOP: c.33.1.3 PDB: 1ilw_A
Probab=20.99 E-value=63 Score=27.87 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHhhhcCCCcEEEEee
Q 011319 209 DVEDTLARANAWLNASQATGVPIVFMNI 236 (488)
Q Consensus 209 svEdT~ARa~AWlsAsqaSGVPIvFvNI 236 (488)
..++.+++++..+.++.+.|+||+|+..
T Consensus 25 ~~~~~v~~i~~l~~~ar~~g~pVi~t~~ 52 (180)
T 1im5_A 25 EGDKIIPKVNEYIRKFKEKGALIVATRD 52 (180)
T ss_dssp TGGGGHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 4567899999999999999999999874
No 271
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=20.89 E-value=1.8e+02 Score=28.86 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=34.9
Q ss_pred ccCCccccccccccccCCceeeeEeecCCCCCCCCCCceeeeecCCCCchhhHHHHHhhhhcCccceEEEEEecCcccce
Q 011319 27 LKGTSKADEWTADMLQTGDIVEEFTIGGGSGLGSGSGSCRTYKAPFKNGRSGVQKILHGSFKNKETSILVRVRRGAEEFA 106 (488)
Q Consensus 27 v~gss~aeEW~e~m~l~GDIVE~~~~g~~~~~~~~~~~~v~~~apFk~gksgl~k~L~k~~k~~e~si~vrVrRG~~~~~ 106 (488)
|...+.|+. .+ |++||+|.+|. | ..+.. ..-..+.+.|++. +.++ .|.+.|.|+..+..
T Consensus 38 V~~gspA~~--aG-L~~GD~Il~Vn-G------------~~v~~---~~~~e~~~~l~~~-~~g~-~v~l~v~r~~~~~~ 96 (391)
T 3tsz_A 38 VLEDSPAAK--EG-LEEGDQILRVN-N------------VDFTN---IIREEAVLFLLDL-PKGE-EVTILAQKKKDVYR 96 (391)
T ss_dssp ECTTCHHHH--TT-CCTTEEEEEET-T------------EECTT---CCHHHHHHHHHHS-CTTS-EEEEEEEECHHHHG
T ss_pred ECCCCHHHH--cC-CCCCCEEEEEC-C------------EECCC---CCHHHHHHHHHhh-cCCC-eEEEEEeeCCcccc
Confidence 444444443 23 89999999887 2 12200 0124556666543 2233 89999999887554
Q ss_pred ee
Q 011319 107 EL 108 (488)
Q Consensus 107 eL 108 (488)
++
T Consensus 97 ~~ 98 (391)
T 3tsz_A 97 RI 98 (391)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 272
>3kl2_A Putative isochorismatase; structural genomics, unknown function, PSI-2, protein struct initiative; 2.30A {Streptomyces avermitilis} SCOP: c.33.1.0
Probab=20.17 E-value=53 Score=29.86 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEeec
Q 011319 210 VEDTLARANAWLNASQATGVPIVFMNIQ 237 (488)
Q Consensus 210 vEdT~ARa~AWlsAsqaSGVPIvFvNIQ 237 (488)
.++.+++++..+.++.+.|+||+|++..
T Consensus 54 ~~~vv~~i~~Ll~~ar~~g~pVi~~~~~ 81 (226)
T 3kl2_A 54 HTGMLANTVAVVDAARQAGVPIMHAPIT 81 (226)
T ss_dssp HHTHHHHHHHHHHHHHHHTCCEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEee
Confidence 5678999999999999999999999863
Done!