BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011320
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C61|A Chain A, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|2C61|B Chain B, Crystal Structure Of The Non-Catalytic B Subunit Of A-Type
Atpase From M. Mazei Go1
pdb|3DSR|A Chain A, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
pdb|3DSR|B Chain B, Adp In Transition Binding Site In The Subunit B Of The
Energy Converter A1ao Atp Synthase
Length = 469
Score = 563 bits (1451), Expect = e-161, Method: Compositional matrix adjust.
Identities = 273/463 (58%), Positives = 348/463 (75%), Gaps = 13/463 (2%)
Query: 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGI 79
EY+T+T +AGPL+ ++K + Y EIVNI++GDGT+RRGQVL+ + VVQVFEGT G+
Sbjct: 13 EYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGL 72
Query: 80 DNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTY 139
D K V FTGE LK P S+D+LGRI +GSG+P D GP I+P+ LDI+G+++NP R
Sbjct: 73 D-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLP 131
Query: 140 PEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLED 199
P++ IQTGISTID N++ RGQK+P+FSA+GLPHNEIA QI RQA +
Sbjct: 132 PKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASV------------P 179
Query: 200 GEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259
G E FA+VFAAMG+ E AQ+F DFE+ G++ER +FLNLA+DP +ERI+TPR+ALT
Sbjct: 180 GSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTA 239
Query: 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRI 319
AEYLAYE G HVLVILTD+++YA+ALR++ AAR EVPGRRGYPGYMYTDLA +YERAG +
Sbjct: 240 AEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIV 299
Query: 320 EGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRL 379
+G KGS+TQIPIL+MP DDITHP PDL+GYITEGQI + R+L + IYPPINVLPSLSRL
Sbjct: 300 KGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRL 359
Query: 380 MKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERK 439
M S IG G TR DH VS+Q+YA YA G+D++ + A+VG+EALS D +LEF D FE K
Sbjct: 360 MNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDK 419
Query: 440 FVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYY 482
FV QG ++R I +L++ W +L P L RI K + +Y+
Sbjct: 420 FVRQGRNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYH 462
>pdb|2RKW|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|2RKW|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|A Chain A, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3B2Q|B Chain B, Intermediate Position Of Atp On Its Trail To The Binding
Pocket Inside The Subunit B Mutant R416w Of The Energy
Converter A1ao Atp Synthase
pdb|3EIU|A Chain A, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
pdb|3EIU|B Chain B, A Second Transient Position Of Atp On Its Trail To The
Nucleotide- Binding Site Of Subunit B Of The Motor
Protein A1ao Atp Synthase
Length = 469
Score = 562 bits (1449), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/463 (58%), Positives = 348/463 (75%), Gaps = 13/463 (2%)
Query: 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGI 79
EY+T+T +AGPL+ ++K + Y EIVNI++GDGT+RRGQVL+ + VVQVFEGT G+
Sbjct: 13 EYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGL 72
Query: 80 DNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTY 139
D K V FTGE LK P S+D+LGRI +GSG+P D GP I+P+ LDI+G+++NP R
Sbjct: 73 D-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLP 131
Query: 140 PEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLED 199
P++ IQTGISTID N++ RGQK+P+FSA+GLPHNEIA QI RQA +
Sbjct: 132 PKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASV------------P 179
Query: 200 GEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259
G E FA+VFAAMG+ E AQ+F DFE+ G++ER +FLNLA+DP +ERI+TPR+ALT
Sbjct: 180 GSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTA 239
Query: 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRI 319
AEYLAYE G HVLVILTD+++YA+ALR++ AAR EVPGRRGYPGYMYTDLA +YERAG +
Sbjct: 240 AEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIV 299
Query: 320 EGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRL 379
+G KGS+TQIPIL+MP DDITHP PDL+GYITEGQI + R+L + IYPPINVLPSLSRL
Sbjct: 300 KGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRL 359
Query: 380 MKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERK 439
M S IG G TR DH VS+Q+YA YA G+D++ + A+VG+EALS D +LEF D FE K
Sbjct: 360 MNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDK 419
Query: 440 FVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYY 482
FV QG ++R I +L++ W +L P L RI K + +Y+
Sbjct: 420 FVRQGWNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYH 462
>pdb|3SSA|A Chain A, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
pdb|3SSA|B Chain B, Crystal Structure Of Subunit B Mutant N157t Of The A1ao
Atp Synthase
Length = 460
Score = 562 bits (1449), Expect = e-160, Method: Compositional matrix adjust.
Identities = 273/466 (58%), Positives = 349/466 (74%), Gaps = 13/466 (2%)
Query: 17 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGT 76
+A EY+T+T +AGPL+ ++K + Y EIVNI++GDGT+RRGQVL+ + VVQVFEGT
Sbjct: 1 MAKEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGT 60
Query: 77 SGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSE 136
G+D K V FTGE LK P S+D+LGRI +GSG+P D GP I+P+ LDI+G+++NP
Sbjct: 61 GGLD-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYA 119
Query: 137 RTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNL 196
R P++ IQTGISTID N++ RGQK+P+FSA+GLPH EIA QI RQA +
Sbjct: 120 RLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHTEIALQIARQASV---------- 169
Query: 197 LEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256
G E FA+VFAAMG+ E AQ+F DFE+ G++ER +FLNLA+DP +ERI+TPR+A
Sbjct: 170 --PGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMA 227
Query: 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERA 316
LT AEYLAYE G HVLVILTD+++YA+ALR++ AAR EVPGRRGYPGYMYTDLA +YERA
Sbjct: 228 LTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERA 287
Query: 317 GRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSL 376
G ++G KGS+TQIPIL+MP DDITHP PDL+GYITEGQI + R+L + IYPPINVLPSL
Sbjct: 288 GIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSL 347
Query: 377 SRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKF 436
SRLM S IG G TR DH VS+Q+YA YA G+D++ + A+VG+EALS D +LEF D F
Sbjct: 348 SRLMNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLF 407
Query: 437 ERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYY 482
E KFV QG ++R I +L++ W +L P L RI K + +Y+
Sbjct: 408 EDKFVRQGRNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYH 453
>pdb|3TIV|A Chain A, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
pdb|3TIV|B Chain B, Crystal Structure Of Subunit B Mutant N157a Of The A1ao
Atp Synthase
Length = 460
Score = 560 bits (1444), Expect = e-160, Method: Compositional matrix adjust.
Identities = 272/463 (58%), Positives = 347/463 (74%), Gaps = 13/463 (2%)
Query: 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGI 79
EY+T+T +AGPL+ ++K + Y EIVNI++GDGT+RRGQVL+ + VVQVFEGT G+
Sbjct: 4 EYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGL 63
Query: 80 DNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTY 139
D K V FTGE LK P S+D+LGRI +GSG+P D GP I+P+ LDI+G+++NP R
Sbjct: 64 D-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLP 122
Query: 140 PEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLED 199
P++ IQTGISTID N++ RGQK+P+FSA+GLPH EIA QI RQA +
Sbjct: 123 PKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHAEIALQIARQASV------------P 170
Query: 200 GEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259
G E FA+VFAAMG+ E AQ+F DFE+ G++ER +FLNLA+DP +ERI+TPR+ALT
Sbjct: 171 GSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTA 230
Query: 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRI 319
AEYLAYE G HVLVILTD+++YA+ALR++ AAR EVPGRRGYPGYMYTDLA +YERAG +
Sbjct: 231 AEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIV 290
Query: 320 EGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRL 379
+G KGS+TQIPIL+MP DDITHP PDL+GYITEGQI + R+L + IYPPINVLPSLSRL
Sbjct: 291 KGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRL 350
Query: 380 MKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERK 439
M S IG G TR DH VS+Q+YA YA G+D++ + A+VG+EALS D +LEF D FE K
Sbjct: 351 MNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDK 410
Query: 440 FVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYY 482
FV QG ++R I +L++ W +L P L RI K + +Y+
Sbjct: 411 FVRQGRNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYH 453
>pdb|3TGW|A Chain A, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
pdb|3TGW|B Chain B, Crystal Structure Of Subunit B Mutant H156a Of The A1ao
Atp Synthase
Length = 460
Score = 559 bits (1441), Expect = e-159, Method: Compositional matrix adjust.
Identities = 272/463 (58%), Positives = 347/463 (74%), Gaps = 13/463 (2%)
Query: 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGI 79
EY+T+T +AGPL+ ++K + Y EIVNI++GDGT+RRGQVL+ + VVQVFEGT G+
Sbjct: 4 EYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGL 63
Query: 80 DNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTY 139
D K V FTGE LK P S+D+LGRI +GSG+P D GP I+P+ LDI+G+++NP R
Sbjct: 64 D-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLP 122
Query: 140 PEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLED 199
P++ IQTGISTID N++ RGQK+P+FSA+GLP NEIA QI RQA +
Sbjct: 123 PKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPANEIALQIARQASV------------P 170
Query: 200 GEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259
G E FA+VFAAMG+ E AQ+F DFE+ G++ER +FLNLA+DP +ERI+TPR+ALT
Sbjct: 171 GSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTA 230
Query: 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRI 319
AEYLAYE G HVLVILTD+++YA+ALR++ AAR EVPGRRGYPGYMYTDLA +YERAG +
Sbjct: 231 AEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIV 290
Query: 320 EGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRL 379
+G KGS+TQIPIL+MP DDITHP PDL+GYITEGQI + R+L + IYPPINVLPSLSRL
Sbjct: 291 KGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRL 350
Query: 380 MKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERK 439
M S IG G TR DH VS+Q+YA YA G+D++ + A+VG+EALS D +LEF D FE K
Sbjct: 351 MNSGIGAGKTREDHKAVSDQMYAGYAEGRDLRGLVAIVGKEALSERDTKFLEFADLFEDK 410
Query: 440 FVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYY 482
FV QG ++R I +L++ W +L P L RI K + +Y+
Sbjct: 411 FVRQGRNENRTIEDTLEIGWQILTHLPENQLGRIDNKYIQKYH 453
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 555 bits (1431), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/469 (57%), Positives = 344/469 (73%), Gaps = 12/469 (2%)
Query: 13 GTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV 72
G+ + EYRT+ V GPL+ ++KV G KY E++ +R+ +G +RRGQVLEV +KA+VQ+
Sbjct: 4 GSSGMIKEYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQI 63
Query: 73 FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSI 132
FEGTSGI+ K ++V+F G L+ VS DM+GR+F+G G+P DNGP ILPE YLDI+G I
Sbjct: 64 FEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVI 123
Query: 133 NPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEK 192
NP R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++
Sbjct: 124 NPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLD---- 179
Query: 193 TDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIIT 252
D+FA+VFAA+G+ E A+FF DF + G+++R +F+NLANDP IERI T
Sbjct: 180 --------SSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231
Query: 253 PRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQI 312
PR+ALT AEYLAYE G HVLVI+TDM++YA+ALRE+SAAR EVPGRRGYPGY+YT+LA +
Sbjct: 232 PRMALTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATL 291
Query: 313 YERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINV 372
+ERAGRI G KGS+TQIPILTMP DD THP PDLTGYITEGQI + R+L I PPI+V
Sbjct: 292 FERAGRIRGLKGSVTQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDV 351
Query: 373 LPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEF 432
LPSLSRL G G TR DH+ NQL+A YA GK + + V+GE ALS D +Y +F
Sbjct: 352 LPSLSRLKDKGTGAGKTREDHAATMNQLFAAYAQGKQAKELAVVLGESALSDIDKIYAKF 411
Query: 433 LDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQY 481
++FE ++V QG Y +R I ++LDL W LL + PR L RI LD+Y
Sbjct: 412 AERFENEYVNQGFYTNRTITETLDLGWELLAMLPRTELKRIKDDLLDKY 460
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 524 bits (1349), Expect = e-149, Method: Compositional matrix adjust.
Identities = 261/463 (56%), Positives = 338/463 (73%), Gaps = 6/463 (1%)
Query: 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGI 79
EY +T ++GPL+ ++ K Y IV+I+ G G +R GQV+EV E AV+QVFE T+G+
Sbjct: 7 EYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGL 66
Query: 80 DNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTY 139
D T+V +V + VS +MLGR FNG GKPID PPI PE L I+G +NP R
Sbjct: 67 DLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRK 126
Query: 140 PEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLED 199
PE+ IQTGISTIDVMN++ RGQK+P+FS +GLP NEIAAQI RQA + + D E
Sbjct: 127 PEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV-----RPDLSGEG 181
Query: 200 GEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259
+E+ FA+VFAAMG+ +F ++FE G++ R LFLN A+DPTIERI+TPR+ALT
Sbjct: 182 EKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTV 241
Query: 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRI 319
AEYLA+E HVLVILTDM++Y++ALRE+ AAREE+PGRRGYPGYMYTDLA IYERAG +
Sbjct: 242 AEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVV 301
Query: 320 EGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRL 379
EG+KGS+TQIPIL+MP+DD THP PDLTGYITEGQI + R+L + IYPPI+ LPSLSRL
Sbjct: 302 EGKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRL 361
Query: 380 MKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERK 439
M + +G+G TR DH VS+QLY+ YA G D++ + A++GE+AL+ D YL+F D FER
Sbjct: 362 MNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERF 421
Query: 440 FVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYY 482
F+ QG +R+I +SL +AW LL + P+ L RI + +YY
Sbjct: 422 FINQGQ-QNRSIEESLQIAWALLSMLPQGELKRISKDHIGKYY 463
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 523 bits (1348), Expect = e-149, Method: Compositional matrix adjust.
Identities = 261/465 (56%), Positives = 338/465 (72%), Gaps = 6/465 (1%)
Query: 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGI 79
EY +T ++GPL+ ++ K Y IV+I+ G G +R GQV+EV E AV+QVFE T+G+
Sbjct: 7 EYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGL 66
Query: 80 DNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTY 139
D T+V +V + VS +MLGR FNG GKPID PPI PE L I+G +NP R
Sbjct: 67 DLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRK 126
Query: 140 PEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLED 199
PE+ IQTGISTIDVMN++ RGQK+P+FS +GLP NEIAAQI RQA + + D E
Sbjct: 127 PEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATV-----RPDLSGEG 181
Query: 200 GEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259
+E+ FA+VFAAMG+ +F ++FE G++ R LFLN A+DPTIERI+TPR+ALT
Sbjct: 182 EKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTV 241
Query: 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRI 319
AEYLA+E HVLVILTDM++Y +ALRE+ AAREE+PGRRGYPGYMYTDLA IYERAG +
Sbjct: 242 AEYLAFEHDYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVV 301
Query: 320 EGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRL 379
EG+KGS+TQIPIL+MP+DD THP PDLTGYITEGQI + R+L + IYPPI+ LPSLSRL
Sbjct: 302 EGKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRL 361
Query: 380 MKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERK 439
M + +G+G TR DH VS+QLY+ YA G D++ + A++GE+AL+ D YL+F D FER
Sbjct: 362 MNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIGEDALTENDRRYLQFADAFERF 421
Query: 440 FVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 484
F+ QG +R+I +SL +AW LL + P+ L RI + +YY +
Sbjct: 422 FINQGQ-QNRSIEESLQIAWALLSMLPQGELKRISKDHIGKYYGQ 465
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 264/462 (57%), Positives = 330/462 (71%), Gaps = 12/462 (2%)
Query: 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGI 79
EYRT+ V GPL ++KV G KY E++ +R +G +RRGQVLEV +KA VQ+FEGTSGI
Sbjct: 11 EYRTIKEVVGPLXAVEKVSGVKYEELIEVRXQNGEIRRGQVLEVQEDKAXVQIFEGTSGI 70
Query: 80 DNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTY 139
+ K ++V+F G L+ VS D +GR+F+G G+P DNGP ILPE YLDI+G INP R Y
Sbjct: 71 NLKNSSVRFLGHPLQLGVSEDXIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDY 130
Query: 140 PEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLED 199
P+E IQTGIS ID +N++ RGQK+P+FS +GLPH E+AAQI RQA ++
Sbjct: 131 PDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLD----------- 179
Query: 200 GEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259
D+FA+VFAA+G+ E A+FF DF + G+++R F NLANDP IERI TPR ALT
Sbjct: 180 -SSDDFAVVFAAIGITFEEAEFFXEDFRQTGAIDRSVXFXNLANDPAIERIATPRXALTA 238
Query: 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRI 319
AEYLAYE G HVLVI TD ++YA+ALRE+SAAR EVPGRRGYPGY+YT+LA ++ERAGRI
Sbjct: 239 AEYLAYEKGXHVLVIXTDXTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRI 298
Query: 320 EGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRL 379
G KGS+TQIPILT P DD THP PDLTGYITEGQI + R+L I PPI+VLPSLSRL
Sbjct: 299 RGLKGSVTQIPILTXPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRL 358
Query: 380 MKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERK 439
G G TR DH+ NQL+A YA GK + + V+GE ALS D +Y +F ++FE +
Sbjct: 359 KDKGTGAGKTREDHAATXNQLFAAYAQGKQAKELAVVLGESALSDIDKIYAKFAERFENE 418
Query: 440 FVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQY 481
+V QG Y +R I ++LDL W LL PR L RI LD+Y
Sbjct: 419 YVNQGFYTNRTITETLDLGWELLAXLPRTELKRIKDDLLDKY 460
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/415 (27%), Positives = 193/415 (46%), Gaps = 43/415 (10%)
Query: 36 KVKGPKYYEIVNI--RLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93
++K P+ ++ + LG+ T+R + +DG + +V+ G +D TG +
Sbjct: 33 EIKTPQGKLVLEVAQHLGENTVR---TIAMDGTEGLVR---GEKVLD--------TGGPI 78
Query: 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDV 153
PV + LGRI N G+PID PI + I + +E++ E+++TGI +D+
Sbjct: 79 SVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDL 138
Query: 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMG 213
+ ARG KI LF AG+ + L+ + K F+ VF +G
Sbjct: 139 LAPYARGGKIGLFGGAGVGKTVFIQE------LINNIAKAHG--------GFS-VFTGVG 183
Query: 214 VNMETAQFFKRDFEENGSM-----ERVTLFLNLANDPTIERIITPRIALTTAEYLAYECG 268
R+ +E G + +V L N+P R LT AEY E G
Sbjct: 184 ERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 243
Query: 269 KHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQ 328
+ VL+ + ++ + A EVSA +P GY + TD+ + ER +KGS+T
Sbjct: 244 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTT--KKGSVTS 301
Query: 329 IPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM 388
+ + +P DD+T P P T + + R + IYP ++ L S SRL+ +A+
Sbjct: 302 VQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV---- 357
Query: 389 TRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
++H DV++++ K +Q + A++G + LS +D L +E K +R F++Q
Sbjct: 358 VGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 411
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 122/431 (28%), Positives = 198/431 (45%), Gaps = 38/431 (8%)
Query: 24 VTGVAGPLV--ILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVD---GEKAVVQV-FEGTS 77
VT V G +V ++ + P + I+ G + VLEV GE V + +GT
Sbjct: 19 VTAVIGAIVDVHFEQSELPAILNALEIKTPQGKL----VLEVAQHLGENTVRTIAMDGTE 74
Query: 78 GIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSER 137
G+ + V TG + PV + LGRI N G+PID PI + I + +E+
Sbjct: 75 GL-VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQ 133
Query: 138 TYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLL 197
+ E+++TGI +D++ ARG KI LF AG+ + L+ + K
Sbjct: 134 STSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQE------LINNIAKAHG-- 185
Query: 198 EDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSM-----ERVTLFLNLANDPTIERIIT 252
F+ VF +G R+ +E G + +V L N+P R
Sbjct: 186 ------GFS-VFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARV 238
Query: 253 PRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQI 312
LT AEY E G+ VL+ + ++ + A EVSA +P GY + TD+ +
Sbjct: 239 ALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAFGYQPTLATDMGLL 298
Query: 313 YERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINV 372
ER +KGS+T + + +P DD+T P P T + + R + IYP ++
Sbjct: 299 QERITTT--KKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDP 356
Query: 373 LPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEF 432
L S SRL+ +A+ ++H DV++++ K +Q + A++G + LS +D L +E
Sbjct: 357 LDSKSRLLDAAV----VGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVER 412
Query: 433 LDKFERKFVAQ 443
K +R F++Q
Sbjct: 413 ARKIQR-FLSQ 422
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/415 (27%), Positives = 193/415 (46%), Gaps = 43/415 (10%)
Query: 36 KVKGPKYYEIVNI--RLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93
++K P+ ++ + LG+ T+R + +DG + +V+ G +D TG +
Sbjct: 44 EIKTPQGKLVLEVAQHLGENTVR---TIAMDGTEGLVR---GEKVLD--------TGGPI 89
Query: 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDV 153
PV + LGRI N G+PID PI + I + +E++ E+++TGI +D+
Sbjct: 90 SVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDL 149
Query: 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMG 213
+ ARG KI LF AG+ + L+ + K F+ VF +G
Sbjct: 150 LAPYARGGKIGLFGGAGVGKTVFIQE------LINNIAKAHG--------GFS-VFTGVG 194
Query: 214 VNMETAQFFKRDFEENGSM-----ERVTLFLNLANDPTIERIITPRIALTTAEYLAYECG 268
R+ +E G + +V L N+P R LT AEY E G
Sbjct: 195 ERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 254
Query: 269 KHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQ 328
+ VL+ + ++ + A EVSA +P GY + TD+ + ER +KGS+T
Sbjct: 255 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTT--KKGSVTS 312
Query: 329 IPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM 388
+ + +P DD+T P P T + + R + IYP ++ L S SRL+ +A+
Sbjct: 313 VQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV---- 368
Query: 389 TRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
++H DV++++ K +Q + A++G + LS +D L +E K +R F++Q
Sbjct: 369 VGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 422
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/415 (27%), Positives = 193/415 (46%), Gaps = 43/415 (10%)
Query: 36 KVKGPKYYEIVNI--RLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93
++K P+ ++ + LG+ T+R + +DG + +V+ G +D TG +
Sbjct: 38 EIKTPQGKLVLEVAQHLGENTVR---TIAMDGTEGLVR---GEKVLD--------TGGPI 83
Query: 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDV 153
PV + LGRI N G+PID PI + I + +E++ E+++TGI +D+
Sbjct: 84 SVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDL 143
Query: 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMG 213
+ ARG KI LF AG+ + L+ + K F+ VF +G
Sbjct: 144 LAPYARGGKIGLFGGAGVGKTVFIQE------LINNIAKAHG--------GFS-VFTGVG 188
Query: 214 VNMETAQFFKRDFEENGSM-----ERVTLFLNLANDPTIERIITPRIALTTAEYLAYECG 268
R+ +E G + +V L N+P R LT AEY E G
Sbjct: 189 ERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 248
Query: 269 KHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQ 328
+ VL+ + ++ + A EVSA +P GY + TD+ + ER +KGS+T
Sbjct: 249 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTT--KKGSVTS 306
Query: 329 IPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM 388
+ + +P DD+T P P T + + R + IYP ++ L S SRL+ +A+
Sbjct: 307 VQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV---- 362
Query: 389 TRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
++H DV++++ K +Q + A++G + LS +D L +E K +R F++Q
Sbjct: 363 VGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 416
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/415 (27%), Positives = 193/415 (46%), Gaps = 43/415 (10%)
Query: 36 KVKGPKYYEIVNI--RLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93
++K P+ ++ + LG+ T+R + +DG + +V+ G +D TG +
Sbjct: 33 EIKTPQGKLVLEVAQHLGENTVR---TIAMDGTEGLVR---GEKVLD--------TGGPI 78
Query: 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDV 153
PV + LGRI N G+PID PI + I + +E++ E+++TGI +D+
Sbjct: 79 SVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDL 138
Query: 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMG 213
+ ARG KI LF AG+ + L+ + K F+ VF +G
Sbjct: 139 LAPYARGGKIGLFGGAGVGKTVFIQE------LINNIAKAHG--------GFS-VFTGVG 183
Query: 214 VNMETAQFFKRDFEENGSM-----ERVTLFLNLANDPTIERIITPRIALTTAEYLAYECG 268
R+ +E G + +V L N+P R LT AEY E G
Sbjct: 184 ERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARVALTGLTIAEYFRDEEG 243
Query: 269 KHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQ 328
+ VL+ + ++ + A EVSA +P GY + TD+ + ER +KGS+T
Sbjct: 244 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLLQERITTT--KKGSVTS 301
Query: 329 IPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM 388
+ + +P DD+T P P T + + R + IYP ++ L S SRL+ +A+
Sbjct: 302 VQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDPLDSKSRLLDAAV---- 357
Query: 389 TRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
++H DV++++ K +Q + A++G + LS +D L +E K +R F++Q
Sbjct: 358 VGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKIQR-FLSQ 411
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 122/431 (28%), Positives = 198/431 (45%), Gaps = 38/431 (8%)
Query: 24 VTGVAGPLV--ILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVD---GEKAVVQV-FEGTS 77
VT V G +V ++ + P + I+ G + VLEV GE V + +GT
Sbjct: 46 VTAVIGAIVDVHFEQSELPAILNALEIKTPQGKL----VLEVAQHLGENTVRTIAMDGTE 101
Query: 78 GIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSER 137
G+ + V TG + PV + LGRI N G+PID PI + I + +E+
Sbjct: 102 GL-VRGEKVLDTGGPISVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQ 160
Query: 138 TYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLL 197
+ E+++TGI +D++ ARG KI LF AG+ + L+ + K
Sbjct: 161 STSAEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQE------LINNIAKAHG-- 212
Query: 198 EDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSM-----ERVTLFLNLANDPTIERIIT 252
F+ VF +G R+ +E G + +V L N+P R
Sbjct: 213 ------GFS-VFTGVGERTREGNDLYREMKETGVINLEGESKVALVFGQMNEPPGARARV 265
Query: 253 PRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQI 312
LT AEY E G+ VL+ + ++ + A EVSA +P GY + TD+ +
Sbjct: 266 ALTGLTIAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGLL 325
Query: 313 YERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINV 372
ER +KGS+T + + +P DD+T P P T + + R + IYP ++
Sbjct: 326 QERI--TTTKKGSVTSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGISELGIYPAVDP 383
Query: 373 LPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEF 432
L S SRL+ +A+ ++H DV++++ K +Q + A++G + LS +D L +E
Sbjct: 384 LDSKSRLLDAAV----VGQEHYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVER 439
Query: 433 LDKFERKFVAQ 443
K +R F++Q
Sbjct: 440 ARKIQR-FLSQ 449
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 107/397 (26%), Positives = 176/397 (44%), Gaps = 38/397 (9%)
Query: 48 IRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFN 107
+ LGD +R + DG + G +D TG + PV LGR+FN
Sbjct: 46 VHLGDNVVRCVAMASTDG------LVRGLEAVD--------TGAPISVPVGKATLGRVFN 91
Query: 108 GSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFS 167
G+PID + E I + E + +E+++TGI ID++ A+G KI LF
Sbjct: 92 VLGEPIDEQGEVNAEERHPIHRPAPEFEELSTADEILETGIKVIDLLAPYAKGGKIGLFG 151
Query: 168 AAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFE 227
AG+ + ++ +E VFA +G + +
Sbjct: 152 GAGVGKTVLIQELINNV---------------AQEHGGLSVFAGVGERTREGNDLYHEMK 196
Query: 228 ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALRE 287
++G + + ++ N+P R+ LT AEY G+ VL+ + ++ + A E
Sbjct: 197 DSGVISKTSMVFGQMNEPPGARLRVALTGLTMAEYFRDREGQDVLLFIDNIFRFTQAGSE 256
Query: 288 VSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLT 347
VSA +P GY + T++ Q+ ER +KGSIT I + +P DD T P P T
Sbjct: 257 VSALLGRMPSAVGYQPTLATEMGQLQERI--TSTKKGSITSIQAIYVPADDYTDPAPATT 314
Query: 348 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA-IGEGMTRRDHSDVSNQLYANYAI 406
+ ++R+L IYP ++ L S SR++ A +GE +H V+ +
Sbjct: 315 FAHLDATTNLERKLAEMGIYPAVDPLASTSRILSPAVVGE-----EHYRVARGVQQVLQR 369
Query: 407 GKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
D+Q + A++G + LS ED L + K +R F++Q
Sbjct: 370 YNDLQDIIAILGMDELSDEDKLIVARARKIQR-FLSQ 405
>pdb|1MAB|B Chain B, Rat Liver F1-Atpase
pdb|2F43|B Chain B, Rat Liver F1-atpase
Length = 479
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 112/394 (28%), Positives = 176/394 (44%), Gaps = 33/394 (8%)
Query: 60 VLEVD---GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115
VLEV GE V + +GT G+ + V +G +K PV + LGRI N G+PID
Sbjct: 46 VLEVAQHLGESTVRTIAMDGTEGL-VRGQKVLDSGAPIKIPVGPETLGRIMNVIGEPIDE 104
Query: 116 GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 175
PI + + I + E + +E++ TGI +D++ A+G KI LF AG+
Sbjct: 105 RGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 164
Query: 176 IAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENG----- 230
+ + L+ + K VFA +G + E+G
Sbjct: 165 LIME------LINNVAKAHGGYS---------VFAGVGERTREGNDLYHEMIESGVINLK 209
Query: 231 -SMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVS 289
+ +V L N+P R LT AEY + G+ VL+ + ++ + A EVS
Sbjct: 210 DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 269
Query: 290 AAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGY 349
A +P GY + TD+ + ER +KGSIT + + +P DD+T P P T
Sbjct: 270 ALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFA 327
Query: 350 ITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKD 409
+ + R + IYP ++ L S SR+M I +H DV+ + K
Sbjct: 328 HLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKS 383
Query: 410 VQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
+Q + A++G + LS ED L + K +R F++Q
Sbjct: 384 LQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 416
>pdb|1FX0|A Chain A, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|A Chain A, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 507
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 176/386 (45%), Gaps = 46/386 (11%)
Query: 32 VILDKVKG-PKYYEIVN----IRLGDGTMRRGQVLEV-DGEKAVVQVFEGTSGID----- 80
+I ++++G + ++VN +++GDG R + EV GE +V+ EGT GI
Sbjct: 12 IIRERIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGE--LVEFEEGTIGIALNLES 69
Query: 81 --------------NKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLD 126
+ ++V+ TG + + PVS LGR+ N KPID I
Sbjct: 70 NNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRL 129
Query: 127 ISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGL 186
I + R E +QTG+ ID M + RGQ+ + RQ G
Sbjct: 130 IESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGD-------------RQTG- 175
Query: 187 VKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPT 246
K TD +L + + N V+ A+G + +F+E G+ME + A+ P
Sbjct: 176 -KTAVATDTIL-NQQGQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPA 233
Query: 247 IERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMY 306
+ + P AEY Y +H L+I D+S A A R++S PGR YPG ++
Sbjct: 234 TLQYLAPYTGAALAEYFMYR-ERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVF 292
Query: 307 TDLAQIYERAGRIEGR--KGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNR 364
+++ ERA ++ +GS+T +PI+ D++ P IT+GQI++ L N
Sbjct: 293 YLHSRLLERAAKLSSLLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNA 352
Query: 365 QIYPPINVLPSLSRLMKSAIGEGMTR 390
I P INV S+SR+ +A + M +
Sbjct: 353 GIRPAINVGISVSRVGSAAQIKAMKK 378
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 176/394 (44%), Gaps = 33/394 (8%)
Query: 60 VLEVD---GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115
VLEV GE V + +GT G+ + V +G ++ PV + LGRI N G+PID
Sbjct: 50 VLEVAQHLGESTVRTIAMDGTEGL-VRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 108
Query: 116 GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 175
PI + + I + E + +E++ TGI +D++ A+G KI LF AG+
Sbjct: 109 RGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 168
Query: 176 IAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENG----- 230
+ + L+ + K VFA +G + E+G
Sbjct: 169 LIME------LINNVAKAHGGYS---------VFAGVGERTREGNDLYHEMIESGVINLK 213
Query: 231 -SMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVS 289
+ +V L N+P R LT AEY + G+ VL+ + ++ + A EVS
Sbjct: 214 DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 273
Query: 290 AAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGY 349
A +P GY + TD+ + ER +KGSIT + + +P DD+T P P T
Sbjct: 274 ALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIXVPADDLTDPAPATTFA 331
Query: 350 ITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKD 409
+ + R + IYP ++ L S SR+M I +H DV+ + K
Sbjct: 332 HLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKS 387
Query: 410 VQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
+Q + A++G + LS ED L + K +R F++Q
Sbjct: 388 LQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 420
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 176/394 (44%), Gaps = 33/394 (8%)
Query: 60 VLEVD---GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115
VLEV GE V + +GT G+ + V +G ++ PV + LGRI N G+PID
Sbjct: 38 VLEVAQHLGESTVRTIAMDGTEGL-VRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 96
Query: 116 GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 175
PI + + I + E + +E++ TGI +D++ A+G KI LF AG+
Sbjct: 97 RGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 156
Query: 176 IAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENG----- 230
+ + L+ + K VFA +G + E+G
Sbjct: 157 LIME------LINNVAKAHGGYS---------VFAGVGERTREGNDLYHEMIESGVINLK 201
Query: 231 -SMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVS 289
+ +V L N+P R LT AEY + G+ VL+ + ++ + A EVS
Sbjct: 202 DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 261
Query: 290 AAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGY 349
A +P GY + TD+ + ER +KGSIT + + +P DD+T P P T
Sbjct: 262 ALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFA 319
Query: 350 ITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKD 409
+ + R + IYP ++ L S SR+M I +H DV+ + K
Sbjct: 320 HLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKS 375
Query: 410 VQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
+Q + A++G + LS ED L + K +R F++Q
Sbjct: 376 LQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 408
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 176/394 (44%), Gaps = 33/394 (8%)
Query: 60 VLEVD---GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115
VLEV GE V + +GT G+ + V +G ++ PV + LGRI N G+PID
Sbjct: 50 VLEVAQHLGESTVRTIAMDGTEGL-VRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 108
Query: 116 GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 175
PI + + I + E + +E++ TGI +D++ A+G KI LF AG+
Sbjct: 109 RGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 168
Query: 176 IAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENG----- 230
+ + L+ + K VFA +G + E+G
Sbjct: 169 LIME------LINNVAKAHGGYS---------VFAGVGERTREGNDLYHEMIESGVINLK 213
Query: 231 -SMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVS 289
+ +V L N+P R LT AEY + G+ VL+ + ++ + A EVS
Sbjct: 214 DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 273
Query: 290 AAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGY 349
A +P GY + TD+ + ER +KGSIT + + +P DD+T P P T
Sbjct: 274 ALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFA 331
Query: 350 ITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKD 409
+ + R + IYP ++ L S SR+M I +H DV+ + K
Sbjct: 332 HLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKS 387
Query: 410 VQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
+Q + A++G + LS ED L + K +R F++Q
Sbjct: 388 LQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 420
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 176/394 (44%), Gaps = 33/394 (8%)
Query: 60 VLEVD---GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115
VLEV GE V + +GT G+ + V +G ++ PV + LGRI N G+PID
Sbjct: 50 VLEVAQHLGESTVRTIAMDGTEGL-VRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 108
Query: 116 GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 175
PI + + I + E + +E++ TGI +D++ A+G KI LF AG+
Sbjct: 109 RGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 168
Query: 176 IAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENG----- 230
+ + L+ + K VFA +G + E+G
Sbjct: 169 LIME------LINNVAKAHGGYS---------VFAGVGERTREGNDLYHEMIESGVINLK 213
Query: 231 -SMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVS 289
+ +V L N+P R LT AEY + G+ VL+ + ++ + A EVS
Sbjct: 214 DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 273
Query: 290 AAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGY 349
A +P GY + TD+ + ER +KGSIT + + +P DD+T P P T
Sbjct: 274 ALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFA 331
Query: 350 ITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKD 409
+ + R + IYP ++ L S SR+M I +H DV+ + K
Sbjct: 332 HLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKS 387
Query: 410 VQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
+Q + A++G + LS ED L + K +R F++Q
Sbjct: 388 LQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 420
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 176/394 (44%), Gaps = 33/394 (8%)
Query: 60 VLEVD---GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115
VLEV GE V + +GT G+ + V +G ++ PV + LGRI N G+PID
Sbjct: 48 VLEVAQHLGESTVRTIAMDGTEGL-VRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 106
Query: 116 GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 175
PI + + I + E + +E++ TGI +D++ A+G KI LF AG+
Sbjct: 107 RGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 166
Query: 176 IAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENG----- 230
+ + L+ + K VFA +G + E+G
Sbjct: 167 LIME------LINNVAKAHGGYS---------VFAGVGERTREGNDLYHEMIESGVINLK 211
Query: 231 -SMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVS 289
+ +V L N+P R LT AEY + G+ VL+ + ++ + A EVS
Sbjct: 212 DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 271
Query: 290 AAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGY 349
A +P GY + TD+ + ER +KGSIT + + +P DD+T P P T
Sbjct: 272 ALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFA 329
Query: 350 ITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKD 409
+ + R + IYP ++ L S SR+M I +H DV+ + K
Sbjct: 330 HLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKS 385
Query: 410 VQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
+Q + A++G + LS ED L + K +R F++Q
Sbjct: 386 LQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 418
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 111/394 (28%), Positives = 176/394 (44%), Gaps = 33/394 (8%)
Query: 60 VLEVD---GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115
VLEV GE V + +GT G+ + V +G ++ PV + LGRI N G+PID
Sbjct: 96 VLEVAQHLGESTVRTIAMDGTEGL-VRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDE 154
Query: 116 GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 175
PI + + I + E + +E++ TGI +D++ A+G KI LF AG+
Sbjct: 155 RGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 214
Query: 176 IAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENG----- 230
+ + L+ + K VFA +G + E+G
Sbjct: 215 LIME------LINNVAKAHGGYS---------VFAGVGERTREGNDLYHEMIESGVINLK 259
Query: 231 -SMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVS 289
+ +V L N+P R LT AEY + G+ VL+ + ++ + A EVS
Sbjct: 260 DATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVS 319
Query: 290 AAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGY 349
A +P GY + TD+ + ER +KGSIT + + +P DD+T P P T
Sbjct: 320 ALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLTDPAPATTFA 377
Query: 350 ITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKD 409
+ + R + IYP ++ L S SR+M I +H DV+ + K
Sbjct: 378 HLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----VGSEHYDVARGVQKILQDYKS 433
Query: 410 VQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
+Q + A++G + LS ED L + K +R F++Q
Sbjct: 434 LQDIIAILGMDELSEEDKLTVSRARKIQR-FLSQ 466
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 171/387 (44%), Gaps = 42/387 (10%)
Query: 34 LDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVV-----QVFEGTSGIDNKFTTVQF 88
L+KV + E N G M Q LE D V+ ++ EGT V+
Sbjct: 44 LEKVMAGELLEFEN-----GVMGMAQNLEEDNVGVVILGPYTEIREGTQ--------VKR 90
Query: 89 TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGI 148
TG +++ PV +LGR+ N G+P+D PI Y I + +R E +QTGI
Sbjct: 91 TGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGI 150
Query: 149 STIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIV 208
ID M I RGQ+ + RQ G K D ++ +D I
Sbjct: 151 KAIDSMIPIGRGQRELIIGD-------------RQTG--KTTIAIDTIINQKGQDVICI- 194
Query: 209 FAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECG 268
+ A+G T ++ +++ + A++P + P EY Y+ G
Sbjct: 195 YVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYK-G 253
Query: 269 KHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRK--GSI 326
KH LV+ D+S A A RE+S PGR YPG ++ +++ ERA ++ K GS+
Sbjct: 254 KHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDEKGGGSL 313
Query: 327 TQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGE 386
T +P + D++ P IT+GQI+++ L + P +NV S+SR+ +A +
Sbjct: 314 TALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGGAAQIK 373
Query: 387 GMTRRDHSDVSNQLYANYAIGKDVQAM 413
M + V+ L + A +++QA
Sbjct: 374 AMKK-----VAGTLRLDLAQYRELQAF 395
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 169/395 (42%), Gaps = 52/395 (13%)
Query: 46 VNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRI 105
V + LGD T+R + DG + G ID TG + PV LGR+
Sbjct: 50 VALHLGDDTVRTIAMASTDG------LIRGMEVID--------TGAPISVPVGQVTLGRV 95
Query: 106 FNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPE--------EMIQTGISTIDVMNSI 157
FN G+PID I +A D P R P+ E+++TGI +D++
Sbjct: 96 FNVLGEPIDLEGDIPADARRD-------PIHRPAPKFEELATEVEILETGIKVVDLLAPY 148
Query: 158 ARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNME 217
+G KI LF AG+ + ++ +E VFA +G
Sbjct: 149 IKGGKIGLFGGAGVGKTVLIQELIHNIA---------------QEHGGISVFAGVGERTR 193
Query: 218 TAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTD 277
+ +++G + + + N+P R+ LT AEY E G+ L+ + +
Sbjct: 194 EGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDN 253
Query: 278 MSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPND 337
+ + A EVSA +P GY + T++ Q+ ER KGSIT I + +P D
Sbjct: 254 IFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERI--TSTAKGSITSIQAIYVPAD 311
Query: 338 DITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSR-LMKSAIGEGMTRRDHSDV 396
D T P P T + ++R+L IYP ++ L S SR L +GE +H V
Sbjct: 312 DYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEIVGE-----EHYQV 366
Query: 397 SNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLE 431
+ ++ K++Q + A++G + LS ED L +
Sbjct: 367 ARKVQQTLERYKELQDIIAILGMDELSDEDKLVVH 401
>pdb|3OAA|D Chain D, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|E Chain E, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|F Chain F, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|L Chain L, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|M Chain M, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|N Chain N, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|T Chain T, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|U Chain U, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|V Chain V, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|BB Chain b, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|CC Chain c, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|DD Chain d, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 459
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 165/351 (47%), Gaps = 23/351 (6%)
Query: 93 LKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTID 152
++ PV LGRI N G+P+D I E I ++ + E + +E+++TGI ID
Sbjct: 75 IEVPVGEATLGRIMNVLGEPVDMKGEIGEEERWAIHRAAPSYEELSNSQELLETGIKVID 134
Query: 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAM 212
+M A+G K+ LF AG+ ++ R + E ++ VFA +
Sbjct: 135 LMCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAI--------------EHSGYS-VFAGV 179
Query: 213 GVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVL 272
G F + ++ +++V+L N+P R+ LT AE E G+ VL
Sbjct: 180 GERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRLRVALTGLTMAEKFRDE-GRDVL 238
Query: 273 VILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPIL 332
+ + ++ Y A EVSA +P GY + ++ + ER + GSIT + +
Sbjct: 239 LFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERI--TSTKTGSITSVQAV 296
Query: 333 TMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRD 392
+P DD+T P+P T + + + RQ+ + IYP ++ L S SR + + ++
Sbjct: 297 YVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPAVDPLDSTSRQLDPLV----VGQE 352
Query: 393 HSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
H D + + + ++++ + A++G + LS ED L + K +R F++Q
Sbjct: 353 HYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVARARKIQR-FLSQ 402
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 141/311 (45%), Gaps = 30/311 (9%)
Query: 86 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQ 145
V+ TG +L+ PV +LGR+ N G PID P+ + + + + ER ++ +Q
Sbjct: 88 VKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQ 147
Query: 146 TGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNF 205
TG +D M I RGQ+ + RQ G K D ++ +
Sbjct: 148 TGYKAVDSMIPIGRGQRELIIGD-------------RQTG--KTALAIDAIINQ-RDSGI 191
Query: 206 AIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAY 265
++ A+G T R EE+G++ + + A++ + + P EY
Sbjct: 192 KCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMGEYF-R 250
Query: 266 ECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGR------- 318
+ G+ L+I D+S A A R++S PGR +PG ++ +++ ERA R
Sbjct: 251 DRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNAEYVE 310
Query: 319 ------IEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINV 372
++G+ GS+T +PI+ D++ P IT+GQI+++ L N I P +N
Sbjct: 311 AFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNP 370
Query: 373 LPSLSRLMKSA 383
S+SR+ +A
Sbjct: 371 GISVSRVGGAA 381
>pdb|2DPY|A Chain A, Crystal Structure Of The Flagellar Type Iii Atpase Flii
pdb|2DPY|B Chain B, Crystal Structure Of The Flagellar Type Iii Atpase Flii
Length = 438
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 121/458 (26%), Positives = 203/458 (44%), Gaps = 61/458 (13%)
Query: 25 TGVAGPL---VILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGI-- 79
TG+ PL I+++ GP+ E+ + +V+ +G++ + E GI
Sbjct: 24 TGLQLPLGATCIIERQDGPETKEVES-----------EVVGFNGQRLFLMPLEEVEGILP 72
Query: 80 DNKFTTVQFTGEVLKT----PVSLDMLGRIFNGSGKPIDNGP-PILPEAYLDISGSSINP 134
+ G+ L++ P+ +LGR+ +G GKP+D P P E I+ NP
Sbjct: 73 GARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALIT-PPFNP 131
Query: 135 SERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTD 194
+RT E ++ TG+ I+ + ++ RGQ++ LF+ +G+ + + G++ R + D
Sbjct: 132 LQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLL-------GMMARYTRAD 184
Query: 195 NLLEDGEEDNFAIVFAAMG-VNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITP 253
IV +G E F + +G V + P + R+
Sbjct: 185 -----------VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLL-RMQGA 232
Query: 254 RIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIY 313
A AE + G+HVL+I+ ++ YA A RE++ A E P +GYP ++ L +
Sbjct: 233 AYATRIAEDF-RDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALV 291
Query: 314 ERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVL 373
ERAG GSIT + DD P D I +G I + R+L YP I++
Sbjct: 292 ERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIE 351
Query: 374 PSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLL--YLE 431
S+SR M + I E R + QL +++ +D+ + VG A S+ +L +
Sbjct: 352 ASISRAMTALITEQHYARVR--LFKQLLSSFQRNRDLVS----VGAYAKGSDPMLDKAIT 405
Query: 432 FLDKFERKFVAQGAY---DSRNIFQSLDLAWTLLRIFP 466
+ E F+ QG + D + Q+LDL IFP
Sbjct: 406 LWPQLE-AFLQQGIFERADWEDSLQALDL------IFP 436
>pdb|1SKY|B Chain B, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 502
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 164/372 (44%), Gaps = 37/372 (9%)
Query: 86 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQ 145
V+ TG +++ PV ++GR+ N G+P+D P+ I + +R E +Q
Sbjct: 88 VRRTGRIMEVPVGETLIGRVVNPLGQPVDGLGPVETTETRPIESRAPGVMDRRSVHEPLQ 147
Query: 146 TGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNF 205
TGI ID + I RGQ+ + RQ G K D ++ ++ N
Sbjct: 148 TGIKAIDALVPIGRGQRELIIGD-------------RQTG--KTSVAIDTIINQ-KDQNM 191
Query: 206 AIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAY 265
++ A+G T ++G+ + + A+ P + P + EY
Sbjct: 192 ICIYVAIGQKESTVATVVETLAKHGAPDYTIVVTASASQPAPLLFLAPYAGVAMGEYFMI 251
Query: 266 ECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRK-- 323
GKHVLV++ D+S A A R++S PGR YPG ++ +++ ERA ++ K
Sbjct: 252 -MGKHVLVVIDDLSKQAAAYRQLSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSDAKGG 310
Query: 324 GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA 383
GS+T +P + DI+ P IT+GQI++ L + P IN S+SR+ +A
Sbjct: 311 GSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAGLSVSRVGGAA 370
Query: 384 IGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
+ M + V+ L + A ++++A A G + LDK + VA+
Sbjct: 371 QIKAMKK-----VAGTLRLDLAAYRELEAF-AQFGSD------------LDKATQANVAR 412
Query: 444 GAYDSRNIFQSL 455
GA + Q L
Sbjct: 413 GARTVEVLKQDL 424
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 139/301 (46%), Gaps = 19/301 (6%)
Query: 85 TVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMI 144
TV+ +++ PV ++LGR+ N G+P+D PI + + I + R + +
Sbjct: 100 TVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPL 159
Query: 145 QTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDN 204
QTGI ID I RGQ+ + RQ G K D ++ +
Sbjct: 160 QTGIKAIDSXIPIGRGQRELIIGD-------------RQTG--KTAIAIDTIINQKGQGV 204
Query: 205 FAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLA 264
+ I + A+G + G+ E T+ + A+DP + I P EY A
Sbjct: 205 YCI-YVAIGQKKSAIARIIDKLRQYGAXEYTTVVVASASDPASLQYIAPYAGCAXGEYFA 263
Query: 265 YECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR-- 322
Y G+ LV+ D+S +A A R++S PGR YPG ++ +++ ERA R+ +
Sbjct: 264 Y-SGRDALVVYDDLSKHAVAYRQLSLLXRRPPGREAYPGDIFYLHSRLLERAVRLNDKLG 322
Query: 323 KGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKS 382
GS+T +PI+ +DI+ P IT+GQIY++ L P INV S+SR+ S
Sbjct: 323 GGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGGS 382
Query: 383 A 383
A
Sbjct: 383 A 383
>pdb|4B2Q|B Chain B, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|BB Chain b, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 486
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 17/303 (5%)
Query: 86 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI--LPEAYLDISGSSINPSERTYPEEM 143
V+ TG ++ PV +LGR+ + G PID PI + + I P R E
Sbjct: 66 VKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILP--RRSVHEP 123
Query: 144 IQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ-ICRQAGLVKRLEKTDNLLEDGEE 202
+QTG+ +D + I RGQ+ + +A I Q KR + E
Sbjct: 124 VQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQ----KRWNNGSD-----ES 174
Query: 203 DNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEY 262
V+ A+G T + E++ +M+ + A++ + + P A + E+
Sbjct: 175 KKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEW 234
Query: 263 LAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR 322
+ GKH L++ D+S A A R++S PGR YPG ++ +++ ERA ++ +
Sbjct: 235 F-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEK 293
Query: 323 K--GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLM 380
+ GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+
Sbjct: 294 EGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVG 353
Query: 381 KSA 383
+A
Sbjct: 354 SAA 356
>pdb|4B2Q|A Chain A, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|C Chain C, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|AA Chain a, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|CC Chain c, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 485
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 17/303 (5%)
Query: 86 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI--LPEAYLDISGSSINPSERTYPEEM 143
V+ TG ++ PV +LGR+ + G PID PI + + I P R E
Sbjct: 65 VKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILP--RRSVHEP 122
Query: 144 IQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ-ICRQAGLVKRLEKTDNLLEDGEE 202
+QTG+ +D + I RGQ+ + +A I Q KR + E
Sbjct: 123 VQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQ----KRWNNGSD-----ES 173
Query: 203 DNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEY 262
V+ A+G T + E++ +M+ + A++ + + P A + E+
Sbjct: 174 KKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEW 233
Query: 263 LAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR 322
+ GKH L++ D+S A A R++S PGR YPG ++ +++ ERA ++ +
Sbjct: 234 F-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEK 292
Query: 323 K--GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLM 380
+ GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+
Sbjct: 293 EGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVG 352
Query: 381 KSA 383
+A
Sbjct: 353 SAA 355
>pdb|3OFN|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 510
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 17/303 (5%)
Query: 86 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI--LPEAYLDISGSSINPSERTYPEEM 143
V+ TG ++ PV +LGR+ + G PID PI + + I P R E
Sbjct: 90 VKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILP--RRSVHEP 147
Query: 144 IQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ-ICRQAGLVKRLEKTDNLLEDGEE 202
+QTG+ +D + I RGQ+ + +A I Q KR + E
Sbjct: 148 VQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQ----KRWNNGSD-----ES 198
Query: 203 DNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEY 262
V+ A+G T + E++ +M+ + A++ + + P A + E+
Sbjct: 199 KKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEW 258
Query: 263 LAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR 322
+ GKH L++ D+S A A R++S PGR YPG ++ +++ ERA ++ +
Sbjct: 259 F-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEK 317
Query: 323 K--GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLM 380
+ GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+
Sbjct: 318 EGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVG 377
Query: 381 KSA 383
+A
Sbjct: 378 SAA 380
>pdb|3VR6|A Chain A, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|B Chain B, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|C Chain C, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 600
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 10/242 (4%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
MER L N +N P R + +T AEY + G V ++ S +A+ALRE+S
Sbjct: 293 MERTVLIANTSNMPVAAREASIYTGITIAEYF-RDMGYDVAIMADSTSRWAEALREMSGR 351
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDL 346
EE+PG GYP Y+ + LA+ YER+GR+ + R+GSIT I ++ DI+ P
Sbjct: 352 LEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQN 411
Query: 347 TGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAI 406
T + + +D L ++ +P IN + S S L + +G M + D S+ + I
Sbjct: 412 TLRVVKVFWGLDSSLAQKRHFPSINWIQSYS-LYSTEVGRYMDQILQQDWSDMVTEGMRI 470
Query: 407 GKDVQAMKAV---VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
++ + + + VG ++LS D L LE ++ Q A+D + F S + + +L+
Sbjct: 471 LQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLK 530
Query: 464 IF 465
+
Sbjct: 531 VI 532
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGD-GTMRRGQVLEVDGEKAVVQVFEGT 76
M+ + V+GPLV+ + + ++ + GD G + G+++E+ + A +QV+E T
Sbjct: 7 GMQIGKIIKVSGPLVMAENMSEASIQDMCLV--GDLGVI--GEIIEMRQDVASIQVYEET 62
Query: 77 SGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115
SGI V+ TGE L + ++ ++F+G +P+D
Sbjct: 63 SGI-GPGEPVRSTGEALSVELGPGIISQMFDGIQRPLDT 100
>pdb|2HLD|A Chain A, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|B Chain B, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|C Chain C, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|J Chain J, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|K Chain K, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|L Chain L, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|S Chain S, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|T Chain T, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|U Chain U, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|3FKS|A Chain A, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|B Chain B, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|C Chain C, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|J Chain J, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|K Chain K, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|L Chain L, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|S Chain S, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|T Chain T, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|U Chain U, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|2WPD|A Chain A, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|B Chain B, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|C Chain C, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3OE7|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEH|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3ZRY|A Chain A, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|B Chain B, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|C Chain C, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|A Chain A, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|B Chain B, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|C Chain C, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|K Chain K, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|L Chain L, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|M Chain M, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 510
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 17/303 (5%)
Query: 86 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI--LPEAYLDISGSSINPSERTYPEEM 143
V+ TG ++ PV +LGR+ + G PID PI + + I P R E
Sbjct: 90 VKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILP--RRSVHEP 147
Query: 144 IQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ-ICRQAGLVKRLEKTDNLLEDGEE 202
+QTG+ +D + I RGQ+ + +A I Q KR + E
Sbjct: 148 VQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQ----KRWNNGSD-----ES 198
Query: 203 DNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEY 262
V+ A+G T + E++ +M+ + A++ + + P A + E+
Sbjct: 199 KKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEW 258
Query: 263 LAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR 322
+ GKH L++ D+S A A R++S PGR YPG ++ +++ ERA ++ +
Sbjct: 259 F-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEK 317
Query: 323 K--GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLM 380
+ GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+
Sbjct: 318 EGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVG 377
Query: 381 KSA 383
+A
Sbjct: 378 SAA 380
>pdb|3OEE|A Chain A, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|B Chain B, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|C Chain C, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|J Chain J, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|K Chain K, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|L Chain L, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|S Chain S, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|T Chain T, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|U Chain U, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
Length = 510
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 17/303 (5%)
Query: 86 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI--LPEAYLDISGSSINPSERTYPEEM 143
V+ TG ++ PV +LGR+ + G PID PI + + I P R E
Sbjct: 90 VKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILP--RRSVHEP 147
Query: 144 IQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ-ICRQAGLVKRLEKTDNLLEDGEE 202
+QTG+ +D + I RGQ+ + +A I Q KR + E
Sbjct: 148 VQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQ----KRWNNGSD-----ES 198
Query: 203 DNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEY 262
V+ A+G T + E++ +M+ + A++ + + P A + E+
Sbjct: 199 KKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEW 258
Query: 263 LAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR 322
+ GKH L++ D+S A A R++S PGR YPG ++ +++ ERA ++ +
Sbjct: 259 F-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEK 317
Query: 323 K--GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLM 380
+ GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+
Sbjct: 318 EGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVG 377
Query: 381 KSA 383
+A
Sbjct: 378 SAA 380
>pdb|2XOK|A Chain A, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|B Chain B, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|C Chain C, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 545
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 17/303 (5%)
Query: 86 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI--LPEAYLDISGSSINPSERTYPEEM 143
V+ TG ++ PV +LGR+ + G PID PI + + I P R E
Sbjct: 125 VKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGILP--RRSVHEP 182
Query: 144 IQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ-ICRQAGLVKRLEKTDNLLEDGEE 202
+QTG+ +D + I RGQ+ + +A I Q KR + E
Sbjct: 183 VQTGLKAVDALVPIGRGQRELIIGDRQTGKTAVALDTILNQ----KRWNNGSD-----ES 233
Query: 203 DNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEY 262
V+ A+G T + E++ +M+ + A++ + + P A + E+
Sbjct: 234 KKLYCVYVAVGQKRSTVAQLVQTLEQHDAMKYSIIVAATASEAAPLQYLAPFTAASIGEW 293
Query: 263 LAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR 322
+ GKH L++ D+S A A R++S PGR YPG ++ +++ ERA ++ +
Sbjct: 294 F-RDNGKHALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSEK 352
Query: 323 K--GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLM 380
+ GS+T +P++ D++ P IT+GQI+++ +L + I P INV S+SR+
Sbjct: 353 EGSGSLTALPVIETQGGDVSAYIPTNVISITDGQIFLEAELFYKGIRPAINVGLSVSRVG 412
Query: 381 KSA 383
+A
Sbjct: 413 SAA 415
>pdb|2XND|A Chain A, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|B Chain B, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|C Chain C, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 492
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 18/339 (5%)
Query: 57 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 116
+G L ++ + V VF G + + V+ TG ++ PV ++LGR+ + G ID
Sbjct: 42 KGMSLNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGK 100
Query: 117 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176
PI +A + + R E +QTGI +D + I RGQ+ + I
Sbjct: 101 GPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSI 160
Query: 177 AAQ-ICRQAGLVKRL-EKTDNLLEDGEEDNFAIVFAAMGVNMET-AQFFKRDFEENGSME 233
A I Q KR + TD E+ ++ A+G T AQ KR + +M+
Sbjct: 161 AIDTIINQ----KRFNDGTD------EKKKLYCIYVAIGQKRSTVAQLVKR-LTDADAMK 209
Query: 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAARE 293
+ A+D + + P + EY + GKH L+I D+S A A R++S
Sbjct: 210 YTIVVSATASDAAPLQYLAPYSGCSMGEYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLR 268
Query: 294 EVPGRRGYPGYMYTDLAQIYERAGRIEGR--KGSITQIPILTMPNDDITHPTPDLTGYIT 351
PGR YPG ++ +++ ERA ++ GS+T +P++ D++ P IT
Sbjct: 269 RPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISIT 328
Query: 352 EGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTR 390
+GQI+++ +L + I P INV S+SR+ +A M +
Sbjct: 329 DGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQ 367
>pdb|1OHH|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
Length = 487
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 155/332 (46%), Gaps = 18/332 (5%)
Query: 57 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 116
+G L ++ + V VF G + + V+ TG ++ PV ++LGR+ + G ID
Sbjct: 37 KGMSLNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGK 95
Query: 117 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176
PI +A + + R E +QTGI +D + I RGQ+ + I
Sbjct: 96 GPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSI 155
Query: 177 AAQ-ICRQAGLVKRL-EKTDNLLEDGEEDNFAIVFAAMGVNMET-AQFFKRDFEENGSME 233
A I Q KR + TD E+ ++ A+G T AQ KR + +M+
Sbjct: 156 AIDTIINQ----KRFNDGTD------EKKKLYCIYVAIGQKRSTVAQLVKR-LTDADAMK 204
Query: 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAARE 293
+ A+D + + P + EY + GKH L+I D+S A A R++S
Sbjct: 205 YTIVVSATASDAAPLQYLAPYSGCSMGEYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLR 263
Query: 294 EVPGRRGYPGYMYTDLAQIYERAGRIEGR--KGSITQIPILTMPNDDITHPTPDLTGYIT 351
PGR YPG ++ +++ ERA ++ GS+T +P++ D++ P IT
Sbjct: 264 RPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISIT 323
Query: 352 EGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA 383
+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 324 DGQIFLETELFYKGIRPAINVGLSVSRVGSAA 355
>pdb|1BMF|A Chain A, Bovine Mitochondrial F1-Atpase
pdb|1BMF|B Chain B, Bovine Mitochondrial F1-Atpase
pdb|1BMF|C Chain C, Bovine Mitochondrial F1-Atpase
pdb|1NBM|A Chain A, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|B Chain B, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|C Chain C, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1QO1|A Chain A, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|B Chain B, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|C Chain C, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|A Chain A, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|B Chain B, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|C Chain C, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|A Chain A, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|B Chain B, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|C Chain C, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|A Chain A, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|B Chain B, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|C Chain C, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|A Chain A, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|B Chain B, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|C Chain C, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|A Chain A, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|B Chain B, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|C Chain C, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|A Chain A, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|B Chain B, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|C Chain C, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|A Chain A, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|B Chain B, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|C Chain C, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|A Chain A, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|B Chain B, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|C Chain C, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2WSS|A Chain A, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|B Chain B, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|C Chain C, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|J Chain J, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|K Chain K, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|L Chain L, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|4ASU|A Chain A, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|B Chain B, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|C Chain C, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 510
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 155/332 (46%), Gaps = 18/332 (5%)
Query: 57 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 116
+G L ++ + V VF G + + V+ TG ++ PV ++LGR+ + G ID
Sbjct: 60 KGMSLNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGK 118
Query: 117 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176
PI +A + + R E +QTGI +D + I RGQ+ + I
Sbjct: 119 GPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSI 178
Query: 177 AAQ-ICRQAGLVKRL-EKTDNLLEDGEEDNFAIVFAAMGVNMET-AQFFKRDFEENGSME 233
A I Q KR + TD E+ ++ A+G T AQ KR + +M+
Sbjct: 179 AIDTIINQ----KRFNDGTD------EKKKLYCIYVAIGQKRSTVAQLVKR-LTDADAMK 227
Query: 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAARE 293
+ A+D + + P + EY + GKH L+I D+S A A R++S
Sbjct: 228 YTIVVSATASDAAPLQYLAPYSGCSMGEYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLR 286
Query: 294 EVPGRRGYPGYMYTDLAQIYERAGRIEGR--KGSITQIPILTMPNDDITHPTPDLTGYIT 351
PGR YPG ++ +++ ERA ++ GS+T +P++ D++ P IT
Sbjct: 287 RPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISIT 346
Query: 352 EGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA 383
+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 347 DGQIFLETELFYKGIRPAINVGLSVSRVGSAA 378
>pdb|2JIZ|A Chain A, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|B Chain B, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|C Chain C, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|H Chain H, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|I Chain I, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|J Chain J, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|A Chain A, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|B Chain B, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|C Chain C, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|H Chain H, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|I Chain I, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|J Chain J, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|A Chain A, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|B Chain B, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|C Chain C, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|H Chain H, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|I Chain I, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|J Chain J, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|A Chain A, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|B Chain B, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|C Chain C, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1
Length = 510
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 155/332 (46%), Gaps = 18/332 (5%)
Query: 57 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 116
+G L ++ + V VF G + + V+ TG ++ PV ++LGR+ + G ID
Sbjct: 60 KGMSLNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGK 118
Query: 117 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176
PI +A + + R E +QTGI +D + I RGQ+ + I
Sbjct: 119 GPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSI 178
Query: 177 AAQ-ICRQAGLVKRL-EKTDNLLEDGEEDNFAIVFAAMGVNMET-AQFFKRDFEENGSME 233
A I Q KR + TD E+ ++ A+G T AQ KR + +M+
Sbjct: 179 AIDTIINQ----KRFNDGTD------EKKKLYCIYVAIGQKRSTVAQLVKR-LTDADAMK 227
Query: 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAARE 293
+ A+D + + P + EY + GKH L+I D+S A A R++S
Sbjct: 228 YTIVVSATASDAAPLQYLAPYSGCSMGEYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLR 286
Query: 294 EVPGRRGYPGYMYTDLAQIYERAGRIEGR--KGSITQIPILTMPNDDITHPTPDLTGYIT 351
PGR YPG ++ +++ ERA ++ GS+T +P++ D++ P IT
Sbjct: 287 RPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISIT 346
Query: 352 EGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA 383
+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 347 DGQIFLETELFYKGIRPAINVGLSVSRVGSAA 378
>pdb|1COW|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|A Chain A, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|B Chain B, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|C Chain C, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
Length = 510
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 155/332 (46%), Gaps = 18/332 (5%)
Query: 57 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 116
+G L ++ + V VF G + + V+ TG ++ PV ++LGR+ + G ID
Sbjct: 60 KGMSLNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGK 118
Query: 117 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176
PI +A + + R E +QTGI +D + I RGQ+ + I
Sbjct: 119 GPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSI 178
Query: 177 AAQ-ICRQAGLVKRL-EKTDNLLEDGEEDNFAIVFAAMGVNMET-AQFFKRDFEENGSME 233
A I Q KR + TD E+ ++ A+G T AQ KR + +M+
Sbjct: 179 AIDTIINQ----KRFNDGTD------EKKKLYCIYVAIGQKRSTVAQLVKR-LTDADAMK 227
Query: 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAARE 293
+ A+D + + P + EY + GKH L+I D+S A A R++S
Sbjct: 228 YTIVVSATASDAAPLQYLAPYSGCSMGEYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLR 286
Query: 294 EVPGRRGYPGYMYTDLAQIYERAGRIEGR--KGSITQIPILTMPNDDITHPTPDLTGYIT 351
PGR YPG ++ +++ ERA ++ GS+T +P++ D++ P IT
Sbjct: 287 RPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISIT 346
Query: 352 EGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA 383
+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 347 DGQIFLETELFYKGIRPAINVGLSVSRVGSAA 378
>pdb|2W6E|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|A Chain A, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|B Chain B, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|C Chain C, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 553
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 155/332 (46%), Gaps = 18/332 (5%)
Query: 57 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 116
+G L ++ + V VF G + + V+ TG ++ PV ++LGR+ + G ID
Sbjct: 103 KGMSLNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGK 161
Query: 117 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176
PI +A + + R E +QTGI +D + I RGQ+ + I
Sbjct: 162 GPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSI 221
Query: 177 AAQ-ICRQAGLVKRL-EKTDNLLEDGEEDNFAIVFAAMGVNMET-AQFFKRDFEENGSME 233
A I Q KR + TD E+ ++ A+G T AQ KR + +M+
Sbjct: 222 AIDTIINQ----KRFNDGTD------EKKKLYCIYVAIGQKRSTVAQLVKR-LTDADAMK 270
Query: 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAARE 293
+ A+D + + P + EY + GKH L+I D+S A A R++S
Sbjct: 271 YTIVVSATASDAAPLQYLAPYSGCSMGEYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLR 329
Query: 294 EVPGRRGYPGYMYTDLAQIYERAGRIEGR--KGSITQIPILTMPNDDITHPTPDLTGYIT 351
PGR YPG ++ +++ ERA ++ GS+T +P++ D++ P IT
Sbjct: 330 RPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISIT 389
Query: 352 EGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA 383
+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 390 DGQIFLETELFYKGIRPAINVGLSVSRVGSAA 421
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-atpase
Complexed With Tentoxin
Length = 498
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 164/357 (45%), Gaps = 19/357 (5%)
Query: 89 TGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGI 148
TG L PV LGRIFN G+P+DN P+ I S+ ++ + +TGI
Sbjct: 94 TGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGI 153
Query: 149 STIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ-AGLVKRLEKTDNLLEDGEEDNFAI 207
++++ RG KI LF AG+ + ++ A + + E E N
Sbjct: 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGN--- 210
Query: 208 VFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYEC 267
+ + M+ + E+N + +V L N+P R+ ALT AEY
Sbjct: 211 ---DLYMEMKESGVIN---EQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVN 264
Query: 268 GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSIT 327
+ VL+ + ++ + A EVSA +P GY + T++ + ER ++GSIT
Sbjct: 265 EQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERI--TSTKEGSIT 322
Query: 328 QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAI-GE 386
I + +P DD+T P P T + + R L + IYP ++ L S S +++ I GE
Sbjct: 323 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGE 382
Query: 387 GMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQ 443
+H +++ ++ K++Q + A++G + LS ED L + K ER F++Q
Sbjct: 383 -----EHYEIAQRVKETLQRYKELQDIIAILGLDELSEEDRLTVARARKIER-FLSQ 433
>pdb|2F43|A Chain A, Rat Liver F1-atpase
Length = 510
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 18/332 (5%)
Query: 57 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 116
+G L ++ + V VF G + + V+ TG ++ PV ++LGR+ + G ID
Sbjct: 60 KGMSLNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGK 118
Query: 117 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176
P+ + + + R E +QTGI +D + I RGQ+ + I
Sbjct: 119 GPVGSKIRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSI 178
Query: 177 AAQ-ICRQAGLVKRL-EKTDNLLEDGEEDNFAIVFAAMGVNMET-AQFFKRDFEENGSME 233
A I Q KR + TD E+ ++ A+G T AQ KR + +M+
Sbjct: 179 AIDTIINQ----KRFNDGTD------EKKKLYCIYVAIGQKRSTVAQLVKR-LTDADAMK 227
Query: 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAARE 293
+ A+D + + P + EY + GKH L+I D+S A A R++S
Sbjct: 228 YTIVVSATASDAAPLQYLAPYSGCSMGEYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLR 286
Query: 294 EVPGRRGYPGYMYTDLAQIYERAGRIEGR--KGSITQIPILTMPNDDITHPTPDLTGYIT 351
PGR YPG ++ +++ ERA ++ GS+T +P++ D++ P IT
Sbjct: 287 RPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISIT 346
Query: 352 EGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA 383
+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 347 DGQIFLETELFYKGIRPAINVGLSVSRVGSAA 378
>pdb|1MAB|A Chain A, Rat Liver F1-Atpase
Length = 510
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 18/332 (5%)
Query: 57 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNG 116
+G L ++ + V VF G + + V+ TG ++ PV ++LGR+ + G ID
Sbjct: 60 KGMSLNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGK 118
Query: 117 PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176
P+ + + + R E +QTGI +D + I RGQ+ + I
Sbjct: 119 GPVGSKIRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSI 178
Query: 177 AAQ-ICRQAGLVKRL-EKTDNLLEDGEEDNFAIVFAAMGVNMET-AQFFKRDFEENGSME 233
A I Q KR + TD E+ ++ A+G T AQ KR + +M+
Sbjct: 179 AIDTIINQ----KRFNDGTD------EKKKLYCIYVAIGQKRSTVAQLVKR-LTDADAMK 227
Query: 234 RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAARE 293
+ A+D + + P + EY + GKH L+I D+S A A R++S
Sbjct: 228 YTIVVSATASDAAPLQYLAPYSGCSMGEYF-RDNGKHALIIYDDLSKQAVAYRQMSLLLR 286
Query: 294 EVPGRRGYPGYMYTDLAQIYERAGRIEGR--KGSITQIPILTMPNDDITHPTPDLTGYIT 351
PGR YPG ++ +++ ERA ++ GS+T +P++ D++ P IT
Sbjct: 287 RPPGREAYPGDVFYLHSRLLERAAKMNDSFGGGSLTALPVIETQAGDVSAYIPTNVISIT 346
Query: 352 EGQIYIDRQLQNRQIYPPINVLPSLSRLMKSA 383
+GQI+++ +L + I P INV S+SR+ +A
Sbjct: 347 DGQIFLETELFYKGIRPAINVGLSVSRVGSAA 378
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 115/241 (47%), Gaps = 10/241 (4%)
Query: 233 ERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAR 292
ER L N +N P R + +T AEY + G V + S +A+ALRE S
Sbjct: 294 ERTVLIANTSNXPVAAREASIYTGITIAEYF-RDXGYDVAIXADSTSRWAEALREXSGRL 352
Query: 293 EEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDLT 347
EE PG GYP Y+ + LA+ YER+GR+ + R+GSIT I ++ DI+ P T
Sbjct: 353 EEXPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGDISEPVTQNT 412
Query: 348 GYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG 407
+ + +D L ++ +P IN + S S L + +G + D S+ + I
Sbjct: 413 LRVVKVFWGLDSSLAQKRHFPSINWIQSYS-LYSTEVGRYXDQILQQDWSDXVTEGXRIL 471
Query: 408 KDVQAMKAV---VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRI 464
++ + + + VG ++LS D L LE ++ Q A+D + F S + + L++
Sbjct: 472 QEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNXLKV 531
Query: 465 F 465
Sbjct: 532 I 532
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 58 GQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115
G+++E + A +QV+E TSGI V+ TGE L + ++ + F+G +P+D
Sbjct: 44 GEIIEXRQDVASIQVYEETSGI-GPGEPVRSTGEALSVELGPGIISQXFDGIQRPLDT 100
>pdb|2OBL|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
pdb|2OBM|A Chain A, Structural And Biochemical Analysis Of A Prototypical
Atpase From The Type Iii Secretion System Of Pathogenic
Bacteria
Length = 347
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 151/329 (45%), Gaps = 37/329 (11%)
Query: 101 MLGRIFNGSGKPIDNG--PPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIA 158
+LGR+ +G G+P+++ P LP + +P R ++ G+ ID + +
Sbjct: 11 LLGRLIDGIGRPMESNIVAPYLPFER-SLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCG 69
Query: 159 RGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMG-VNME 217
GQ+I +F+ +G+ + + IC +G + IV A +G E
Sbjct: 70 IGQRIGIFAGSGVGKSTLLGMIC-----------------NGASADI-IVLALIGERGRE 111
Query: 218 TAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTD 277
+F ++ + L + ++ P +ER+ A T AEY + GK+VL+++
Sbjct: 112 VNEFLA--LLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQ-GKNVLLMMDS 168
Query: 278 MSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPND 337
++ YA A R+V A E R G+P +++ L ++ ERAG KGSIT I + + +D
Sbjct: 169 VTRYARAARDVGLASGEPDVRGGFPPSVFSSLPKLLERAG--PAPKGSITAIYTVLLESD 226
Query: 338 DITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAI-GEGMTRRDHSDV 396
++ P D I +G I + R+L +P I++ S SR+M + + E +
Sbjct: 227 NVNDPIGDEVRSILDGHIVLTRELAEENHFPAIDIGLSASRVMHNVVTSEHLRAAAECKK 286
Query: 397 SNQLYAN---------YAIGKDVQAMKAV 416
Y N Y +G+D +A KA+
Sbjct: 287 LIATYKNPELLIRIGEYTMGQDPEADKAI 315
>pdb|3ND8|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 151/349 (43%), Gaps = 41/349 (11%)
Query: 135 SERTYPEEMIQTGISTIDVMNSIARGQKI----PLFSAAGLPHNEIA----AQICRQAGL 186
E+ PE + TG ID A+G P S A + +++A AQ+ G
Sbjct: 202 KEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGATVTQHQLAKWSDAQVVIYIGC 261
Query: 187 VKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGS--MERVTLFLNLAND 244
+R + ++LE +F K + G MER L N +N
Sbjct: 262 GERGNEMTDVLE---------------------EFPKLKDPKTGKPLMERTVLIANTSNM 300
Query: 245 PTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGY 304
P R + +T AEY + G V ++ S +A+ALRE+S EE+PG GYP Y
Sbjct: 301 PVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAY 359
Query: 305 MYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDR 359
+ + LA+ YERAGR+ + R GS++ I ++ P D + P T + + +D
Sbjct: 360 LASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDA 419
Query: 360 QLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYANYAIGKDVQAMKAV 416
L R+ +P IN L S S L A+ + + + + ++ A ++Q + +
Sbjct: 420 DLARRRHFPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRI 478
Query: 417 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIF 465
VG +AL + L ++ Q A+D + + + T++R+
Sbjct: 479 VGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVL 527
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3QG1|A Chain A, Crystal Structure Of P-Loop G239a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 151/349 (43%), Gaps = 41/349 (11%)
Query: 135 SERTYPEEMIQTGISTIDVMNSIARGQKI----PLFSAAGLPHNEIA----AQICRQAGL 186
E+ PE + TG ID A+G P SA + +++A AQ+ G
Sbjct: 202 KEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSAKTVTQHQLAKWSDAQVVIYIGC 261
Query: 187 VKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGS--MERVTLFLNLAND 244
+R + ++LE +F K + G MER L N +N
Sbjct: 262 GERGNEMTDVLE---------------------EFPKLKDPKTGKPLMERTVLIANTSNM 300
Query: 245 PTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGY 304
P R + +T AEY + G V ++ S +A+ALRE+S EE+PG GYP Y
Sbjct: 301 PVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAY 359
Query: 305 MYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDR 359
+ + LA+ YERAGR+ + R GS++ I ++ P D + P T + + +D
Sbjct: 360 LASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDA 419
Query: 360 QLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYANYAIGKDVQAMKAV 416
L R+ +P IN L S S L A+ + + + + ++ A ++Q + +
Sbjct: 420 DLARRRHFPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRI 478
Query: 417 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIF 465
VG +AL + L ++ Q A+D + + + T++R+
Sbjct: 479 VGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVL 527
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3SE0|A Chain A, Structural Characterization Of The Subunit A Mutant F508w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
MER L N +N P R + +T AEY + G V ++ S +A+ALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGR 346
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDL 346
EE+PG GYP Y+ + LA+ YERAGR+ + R GS++ I ++ P D + P
Sbjct: 347 LEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 406
Query: 347 TGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYAN 403
T + + +D L R+ +P IN L S S L A+ + + + + ++ A
Sbjct: 407 TLRVVKVFWALDADLARRRHFPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMAL 465
Query: 404 YAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
++Q + +VG +AL + L ++ Q A+D + + + T++R
Sbjct: 466 LQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAWDEVDTYCPPEKQVTMMR 525
Query: 464 IF 465
+
Sbjct: 526 VL 527
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|3SDZ|A Chain A, Structural Characterization Of The Subunit A Mutant F427w
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
MER L N +N P R + +T AEY + G V ++ S +A+ALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGR 346
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDL 346
EE+PG GYP Y+ + LA+ YERAGR+ + R GS++ I ++ P D + P
Sbjct: 347 LEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 406
Query: 347 TGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYAN 403
T + + +D L R+ +P IN L S S L A+ + + + + ++ A
Sbjct: 407 TLRVVKVFWALDADLARRRHWPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMAL 465
Query: 404 YAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
++Q + +VG +AL + L ++ Q A+D + + + T++R
Sbjct: 466 LQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMR 525
Query: 464 IF 465
+
Sbjct: 526 VL 527
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|1VDZ|A Chain A, Crystal Structure Of A-Type Atpase Catalytic Subunit A
From Pyrococcus Horikoshii Ot3
Length = 588
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
MER L N +N P R + +T AEY + G V ++ S +A+ALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGR 346
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDL 346
EE+PG GYP Y+ + LA+ YERAGR+ + R GS++ I ++ P D + P
Sbjct: 347 LEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 406
Query: 347 TGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYAN 403
T + + +D L R+ +P IN L S S L A+ + + + + ++ A
Sbjct: 407 TLRVVKVFWALDADLARRRHFPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMAL 465
Query: 404 YAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
++Q + +VG +AL + L ++ Q A+D + + + T++R
Sbjct: 466 LQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMR 525
Query: 464 IF 465
+
Sbjct: 526 VL 527
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|3ND9|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Of The A1ao Atp Synthase
Length = 588
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
MER L N +N P R + +T AEY + G V ++ S +A+ALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGR 346
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDL 346
EE+PG GYP Y+ + LA+ YERAGR+ + R GS++ I ++ P D + P
Sbjct: 347 LEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 406
Query: 347 TGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYAN 403
T + + +D L R+ +P IN L S S L A+ + + + + ++ A
Sbjct: 407 TLRVVKVFWALDADLARRRHFPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMAL 465
Query: 404 YAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
++Q + +VG +AL + L ++ Q A+D + + + T++R
Sbjct: 466 LQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMR 525
Query: 464 IF 465
+
Sbjct: 526 VL 527
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3M4Y|A Chain A, Structural Characterization Of The Subunit A Mutant P235a
Of The A-Atp Synthase
Length = 588
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
MER L N +N P R + +T AEY + G V ++ S +A+ALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGR 346
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDL 346
EE+PG GYP Y+ + LA+ YERAGR+ + R GS++ I ++ P D + P
Sbjct: 347 LEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 406
Query: 347 TGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYAN 403
T + + +D L R+ +P IN L S S L A+ + + + + ++ A
Sbjct: 407 TLRVVKVFWALDADLARRRHFPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMAL 465
Query: 404 YAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
++Q + +VG +AL + L ++ Q A+D + + + T++R
Sbjct: 466 LQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMR 525
Query: 464 IF 465
+
Sbjct: 526 VL 527
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|3QJY|A Chain A, Crystal Structure Of P-Loop G234a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
MER L N +N P R + +T AEY + G V ++ S +A+ALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGR 346
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDL 346
EE+PG GYP Y+ + LA+ YERAGR+ + R GS++ I ++ P D + P
Sbjct: 347 LEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 406
Query: 347 TGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYAN 403
T + + +D L R+ +P IN L S S L A+ + + + + ++ A
Sbjct: 407 TLRVVKVFWALDADLARRRHFPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMAL 465
Query: 404 YAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
++Q + +VG +AL + L ++ Q A+D + + + T++R
Sbjct: 466 LQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMR 525
Query: 464 IF 465
+
Sbjct: 526 VL 527
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
MER L N +N P R + +T AEY + G V ++ S +A+ALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGR 346
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDL 346
EE+PG GYP Y+ + LA+ YERAGR+ + R GS++ I ++ P D + P
Sbjct: 347 LEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 406
Query: 347 TGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYAN 403
T + + +D L R+ +P IN L S S L A+ + + + + ++ A
Sbjct: 407 TLRVVKVFWALDADLARRRHFPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMAL 465
Query: 404 YAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
++Q + +VG +AL + L ++ Q A+D + + + T++R
Sbjct: 466 LQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMR 525
Query: 464 IF 465
+
Sbjct: 526 VL 527
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPGLLTSIYDGIQRPLE 93
>pdb|3I4L|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Amp-Pnp Of The A1ao Atp
Synthase
pdb|3I72|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With So4 Of The A1ao Atp Synthase
pdb|3I73|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A With Adp Of The A1ao Atp Synthase
pdb|3P20|A Chain A, Crystal Structure Of Vanadate Bound Subunit A Of The A1ao
Atp Synthase
Length = 588
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
MER L N +N P R + +T AEY + G V ++ S +A+ALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGR 346
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDL 346
EE+PG GYP Y+ + LA+ YERAGR+ + R GS++ I ++ P D + P
Sbjct: 347 LEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 406
Query: 347 TGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYAN 403
T + + +D L R+ +P IN L S S L A+ + + + + ++ A
Sbjct: 407 TLRVVKVFWALDADLARRRHFPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMAL 465
Query: 404 YAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
++Q + +VG +AL + L ++ Q A+D + + + T++R
Sbjct: 466 LQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMR 525
Query: 464 IF 465
+
Sbjct: 526 VL 527
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
MER L N +N P R + +T AEY + G V ++ S +A+ALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGR 346
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDL 346
EE+PG GYP Y+ + LA+ YERAGR+ + R GS++ I ++ P D + P
Sbjct: 347 LEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 406
Query: 347 TGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYAN 403
T + + +D L R+ +P IN L S S L A+ + + + + ++ A
Sbjct: 407 TLRVVKVFWALDADLARRRHFPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMAL 465
Query: 404 YAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
++Q + +VG +AL + L ++ Q A+D + + + T++R
Sbjct: 466 LQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMR 525
Query: 464 IF 465
+
Sbjct: 526 VL 527
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3MFY|A Chain A, Structural Characterization Of The Subunit A Mutant F236a
Of The A-Atp Synthase From Pyrococcus Horikoshii
Length = 588
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 115/242 (47%), Gaps = 10/242 (4%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
MER L N +N P R + +T AEY + G V ++ S +A+ALRE+S
Sbjct: 288 MERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEALREISGR 346
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI-----EGRKGSITQIPILTMPNDDITHPTPDL 346
EE+PG GYP Y+ + LA+ YERAGR+ + R GS++ I ++ P D + P
Sbjct: 347 LEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQN 406
Query: 347 TGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR---DHSDVSNQLYAN 403
T + + +D L R+ +P IN L S S L A+ + + + + ++ A
Sbjct: 407 TLRVVKVFWALDADLARRRHFPAINWLTSYS-LYVDAVKDWWHKNIDPEWKAMRDKAMAL 465
Query: 404 YAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
++Q + +VG +AL + L ++ Q A+D + + + T++R
Sbjct: 466 LQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMR 525
Query: 464 IF 465
+
Sbjct: 526 VL 527
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 4/88 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
V GPLV+ D +KG K YE+V R+G+ + G+++ ++G+KAV+QV+E T+G+ V
Sbjct: 10 VTGPLVVADGMKGAKMYEVV--RVGELGLI-GEIIRLEGDKAVIQVYEETAGVRPGEPVV 66
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPID 114
TG L + +L I++G +P++
Sbjct: 67 G-TGASLSVELGPRLLTSIYDGIQRPLE 93
>pdb|3GQB|A Chain A, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|C Chain C, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 578
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 8/240 (3%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
M R L N +N P R + + +T AEY + G V ++ S +A+ALRE+S+
Sbjct: 282 MHRTVLIANTSNMPVAAREASIYVGVTIAEYFR-DQGFSVALMADSTSRWAEALREISSR 340
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI---EGRKGSITQIPILTMPNDDITHPTPDLTG 348
EE+P GYP Y+ LA YERAG++ G +G++T + ++ P D++ P T
Sbjct: 341 LEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTL 400
Query: 349 YITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM---TRRDHSDVSNQLYANYA 405
I +D L R+ +P IN S S L SA+ D+ ++ + +
Sbjct: 401 RIVGAFWRLDASLAFRRHFPAINWNGSYS-LFTSALDPWYRENVAEDYPELRDAISELLQ 459
Query: 406 IGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIF 465
+Q + +VG +AL + L +E F+ Q AY + + S+ A+ ++++
Sbjct: 460 REAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYSSMKKAYGIMKMI 519
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
+AGP VI + G + Y+I + G+ + G+++ +DG+ A VQV+E TSG+ V
Sbjct: 9 IAGPAVIAKGMLGARMYDISKV--GEEGLV-GEIIRLDGDTAFVQVYEDTSGLKVGEPVV 65
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115
TG L + ML I++G +P++
Sbjct: 66 S-TGLPLAVELGPGMLNGIYDGIQRPLER 93
>pdb|3A5C|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|A Chain A, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|B Chain B, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|C Chain C, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|I Chain I, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|J Chain J, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|K Chain K, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|A Chain A, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|B Chain B, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|C Chain C, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 578
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 114/240 (47%), Gaps = 8/240 (3%)
Query: 232 MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAA 291
M R L N +N P R + + +T AEY + G V ++ S +A+ALRE+S+
Sbjct: 282 MHRTVLIANTSNMPVAAREASIYVGVTIAEYFR-DQGFSVALMADSTSRWAEALREISSR 340
Query: 292 REEVPGRRGYPGYMYTDLAQIYERAGRI---EGRKGSITQIPILTMPNDDITHPTPDLTG 348
EE+P GYP Y+ LA YERAG++ G +G++T + ++ P D++ P T
Sbjct: 341 LEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTL 400
Query: 349 YITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM---TRRDHSDVSNQLYANYA 405
I +D L R+ +P IN S S L SA+ D+ ++ + +
Sbjct: 401 RIVGAFWRLDASLAFRRHFPAINWNGSYS-LFTSALDPWYRENVAEDYPELRDAISELLQ 459
Query: 406 IGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIF 465
+Q + +VG +AL + L +E F+ Q AY + + S+ A+ ++++
Sbjct: 460 REAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYCSMKKAYGIMKMI 519
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 27 VAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTV 86
+AGP VI + G + Y+I + G+ + G+++ +DG+ A VQV+E TSG+ V
Sbjct: 9 IAGPAVIAKGMLGARMYDICKV--GEEGLV-GEIIRLDGDTAFVQVYEDTSGLKVGEPVV 65
Query: 87 QFTGEVLKTPVSLDMLGRIFNGSGKPIDN 115
TG L + ML I++G +P++
Sbjct: 66 S-TGLPLAVELGPGMLNGIYDGIQRPLER 93
>pdb|1YE4|A Chain A, Crystal Structure Of The Lys-274 To Arg Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nad+
pdb|1YE4|B Chain B, Crystal Structure Of The Lys-274 To Arg Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nad+
pdb|1YE4|C Chain C, Crystal Structure Of The Lys-274 To Arg Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nad+
pdb|1YE4|D Chain D, Crystal Structure Of The Lys-274 To Arg Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nad+
pdb|1YE6|A Chain A, Crystal Structure Of The Lys-274 To Arg Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nadp+
pdb|1YE6|B Chain B, Crystal Structure Of The Lys-274 To Arg Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nadp+
pdb|1YE6|C Chain C, Crystal Structure Of The Lys-274 To Arg Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nadp+
pdb|1YE6|D Chain D, Crystal Structure Of The Lys-274 To Arg Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nadp+
Length = 322
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 380 MKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQ-AMKAVVGEEALSSEDLLYLEFLDKFER 438
+K AI EG+ +R+ ++++L+ NY K+V+ A+ + + + DL + F F
Sbjct: 62 VKRAIDEGLVKREEIFLTSKLWNNYHDPKNVETALNKTLADLKVDYVDLFLIHFPIAF-- 119
Query: 439 KFV 441
KFV
Sbjct: 120 KFV 122
>pdb|1SM9|A Chain A, Crystal Structure Of An Engineered K274rn276d Double
Mutant Of Xylose Reductase From Candida Tenuis Optimized
To Utilize Nad
pdb|1SM9|B Chain B, Crystal Structure Of An Engineered K274rn276d Double
Mutant Of Xylose Reductase From Candida Tenuis Optimized
To Utilize Nad
pdb|1SM9|C Chain C, Crystal Structure Of An Engineered K274rn276d Double
Mutant Of Xylose Reductase From Candida Tenuis Optimized
To Utilize Nad
pdb|1SM9|D Chain D, Crystal Structure Of An Engineered K274rn276d Double
Mutant Of Xylose Reductase From Candida Tenuis Optimized
To Utilize Nad
Length = 322
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 380 MKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQ-AMKAVVGEEALSSEDLLYLEFLDKFER 438
+K AI EG+ +R+ ++++L+ NY K+V+ A+ + + + DL + F F
Sbjct: 62 VKRAIDEGLVKREEIFLTSKLWNNYHDPKNVETALNKTLADLKVDYVDLFLIHFPIAF-- 119
Query: 439 KFV 441
KFV
Sbjct: 120 KFV 122
>pdb|1Z9A|A Chain A, Crystal Structure Of The Asn-309 To Asp Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nad+
pdb|1Z9A|B Chain B, Crystal Structure Of The Asn-309 To Asp Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nad+
pdb|1Z9A|C Chain C, Crystal Structure Of The Asn-309 To Asp Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nad+
pdb|1Z9A|D Chain D, Crystal Structure Of The Asn-309 To Asp Mutant Of Candida
Tenuis Xylose Reductase (Akr2b5) Bound To Nad+
Length = 321
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 380 MKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQ-AMKAVVGEEALSSEDLLYLEFLDKFER 438
+K AI EG+ +R+ ++++L+ NY K+V+ A+ + + + DL + F F
Sbjct: 61 VKRAIDEGLVKREEIFLTSKLWNNYHDPKNVETALNKTLADLKVDYVDLFLIHFPIAF-- 118
Query: 439 KFV 441
KFV
Sbjct: 119 KFV 121
>pdb|1JEZ|A Chain A, The Structure Of Xylose Reductase, A Dimeric Aldo-Keto
Reductase From Candida Tenuis
pdb|1JEZ|B Chain B, The Structure Of Xylose Reductase, A Dimeric Aldo-Keto
Reductase From Candida Tenuis
pdb|1K8C|A Chain A, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
pdb|1K8C|B Chain B, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
pdb|1K8C|C Chain C, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
pdb|1K8C|D Chain D, Crystal Structure Of Dimeric Xylose Reductase In Complex
With Nadp(H)
pdb|1MI3|A Chain A, 1.8 Angstrom Structure Of Xylose Reductase From Candida
Tenuis In Complex With Nadh
pdb|1MI3|B Chain B, 1.8 Angstrom Structure Of Xylose Reductase From Candida
Tenuis In Complex With Nadh
pdb|1MI3|C Chain C, 1.8 Angstrom Structure Of Xylose Reductase From Candida
Tenuis In Complex With Nadh
pdb|1MI3|D Chain D, 1.8 Angstrom Structure Of Xylose Reductase From Candida
Tenuis In Complex With Nadh
Length = 322
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 380 MKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQ-AMKAVVGEEALSSEDLLYLEFLDKFER 438
+K AI EG+ +R+ ++++L+ NY K+V+ A+ + + + DL + F F
Sbjct: 62 VKRAIDEGLVKREEIFLTSKLWNNYHDPKNVETALNKTLADLKVDYVDLFLIHFPIAF-- 119
Query: 439 KFV 441
KFV
Sbjct: 120 KFV 122
>pdb|1EVJ|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|B Chain B, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|C Chain C, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|D Chain D, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
Length = 352
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 238 FLNLANDPTIER--IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAR 292
F +A DP I+ II P A++ GKHV+ +S AD R + AA+
Sbjct: 61 FDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAK 117
>pdb|1RYD|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase From
Zymomonas Mobilis
pdb|1RYD|B Chain B, Crystal Structure Of Glucose-Fructose Oxidoreductase From
Zymomonas Mobilis
pdb|1RYE|A Chain A, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|B Chain B, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|C Chain C, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|D Chain D, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
Length = 387
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 238 FLNLANDPTIER--IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAR 292
F +A DP I+ II P A++ GKHV+ +S AD R + AA+
Sbjct: 96 FDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAK 152
>pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase
pdb|1OFG|B Chain B, Glucose-Fructose Oxidoreductase
pdb|1OFG|C Chain C, Glucose-Fructose Oxidoreductase
pdb|1OFG|D Chain D, Glucose-Fructose Oxidoreductase
pdb|1OFG|E Chain E, Glucose-Fructose Oxidoreductase
pdb|1OFG|F Chain F, Glucose-Fructose Oxidoreductase
Length = 381
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 238 FLNLANDPTIER--IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAR 292
F +A DP I+ II P A++ GKHV+ +S AD R + AA+
Sbjct: 90 FDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAK 146
>pdb|1H6D|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|C Chain C, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|D Chain D, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|E Chain E, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|F Chain F, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|G Chain G, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|H Chain H, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|I Chain I, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|J Chain J, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|K Chain K, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|L Chain L, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6C|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6C|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6B|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6B|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6A|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
pdb|1H6A|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
Length = 433
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 238 FLNLANDPTIER--IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAR 292
F +A DP I+ II P A++ GKHV+ +S AD R + AA+
Sbjct: 142 FDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAK 198
>pdb|1PC2|A Chain A, Solution Structure Of Human Mitochondria Fission Protein
Fis1
Length = 152
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 413 MKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
M+AV+ E +S EDLL KFE+KF ++ A S + + AW L+R
Sbjct: 1 MEAVL-NELVSVEDLL------KFEKKFQSEKAAGSVSKSTQFEYAWCLVR 44
>pdb|1IYG|A Chain A, Solution Structure Of Rsgi Ruh-001, A Fis1p-Like And Cgi-
135 Homologous Domain From A Mouse Cdna
Length = 133
Score = 28.9 bits (63), Expect = 6.6, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 418 GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463
G EA+ +E L+ +E L FERKF ++ A S + + AW L+R
Sbjct: 7 GMEAVLNE-LVSVEDLKNFERKFQSEQAAGSVSKSTQFEYAWCLVR 51
>pdb|1VL1|A Chain A, Crystal Structure Of 6-Phosphogluconolactonase (Tm1154)
From Thermotoga Maritima At 1.70a Resolution
Length = 232
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 10/136 (7%)
Query: 135 SERTYPEEMIQTGIST-----IDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKR 189
+E+ +P I +S +D S R LFS A +P + + + K
Sbjct: 65 AEQKFPWNRIHFFLSDERYVPLDSDQSNFRNINEVLFSRAKIPSGNVH-YVDTSLPIEKA 123
Query: 190 LEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249
EK + + D F + MG + A F E G+ + + F + + DP + R
Sbjct: 124 CEKYEREIRSAT-DQFDLAILGMGPDGHVASIFDL---ETGNKDNLVTFTDPSGDPKVPR 179
Query: 250 IITPRIALTTAEYLAY 265
+ AL T+ Y+ +
Sbjct: 180 VTLTFRALNTSLYVLF 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,623,355
Number of Sequences: 62578
Number of extensions: 636518
Number of successful extensions: 1841
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1590
Number of HSP's gapped (non-prelim): 98
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)