Query 011320
Match_columns 488
No_of_seqs 188 out of 1303
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 00:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01040 V-ATPase_V1_B V-type 100.0 5E-126 1E-130 992.8 48.3 465 20-487 1-465 (466)
2 PRK04196 V-type ATP synthase s 100.0 1E-122 2E-127 979.0 47.7 457 19-487 2-458 (460)
3 TIGR01041 ATP_syn_B_arch ATP s 100.0 2E-122 4E-127 974.9 47.0 453 20-485 1-454 (458)
4 COG1157 FliI Flagellar biosynt 100.0 8E-122 2E-126 938.5 38.3 417 14-463 18-440 (441)
5 PRK02118 V-type ATP synthase s 100.0 8E-115 2E-119 907.0 46.6 432 18-486 2-434 (436)
6 PRK09281 F0F1 ATP synthase sub 100.0 4E-112 1E-116 904.6 44.5 438 12-480 18-463 (502)
7 TIGR03324 alt_F1F0_F1_al alter 100.0 9E-112 2E-116 895.1 45.6 425 12-467 18-446 (497)
8 PRK09280 F0F1 ATP synthase sub 100.0 2E-111 5E-116 887.8 45.0 430 20-473 2-449 (463)
9 TIGR01043 ATP_syn_A_arch ATP s 100.0 2E-111 4E-116 902.3 42.1 417 21-463 1-524 (578)
10 PRK12597 F0F1 ATP synthase sub 100.0 7E-111 2E-115 886.4 44.3 421 20-465 2-436 (461)
11 TIGR01039 atpD ATP synthase, F 100.0 1E-110 3E-115 879.0 44.4 429 21-473 2-448 (461)
12 PRK04192 V-type ATP synthase s 100.0 1E-110 2E-115 897.2 41.0 423 19-465 2-525 (586)
13 TIGR03305 alt_F1F0_F1_bet alte 100.0 3E-110 7E-115 876.9 43.9 419 22-465 1-431 (449)
14 PRK06936 type III secretion sy 100.0 1E-109 3E-114 870.7 45.7 415 15-462 18-438 (439)
15 PRK13343 F0F1 ATP synthase sub 100.0 9E-110 2E-114 882.7 45.4 427 11-468 17-447 (502)
16 PRK08927 fliI flagellum-specif 100.0 1E-109 2E-114 871.9 42.9 420 15-464 12-438 (442)
17 PRK08972 fliI flagellum-specif 100.0 3E-109 7E-114 865.6 44.8 420 13-464 18-442 (444)
18 TIGR00962 atpA proton transloc 100.0 2E-109 5E-114 883.6 44.4 424 12-466 17-444 (501)
19 CHL00060 atpB ATP synthase CF1 100.0 3E-109 7E-114 873.9 44.9 437 13-473 8-473 (494)
20 CHL00059 atpA ATP synthase CF1 100.0 5E-109 1E-113 871.0 44.1 419 18-467 4-425 (485)
21 TIGR01042 V-ATPase_V1_A V-type 100.0 1E-109 3E-114 884.2 39.2 419 20-463 1-529 (591)
22 PRK05688 fliI flagellum-specif 100.0 7E-107 2E-111 852.1 44.1 419 15-463 22-447 (451)
23 PRK07165 F0F1 ATP synthase sub 100.0 9E-107 2E-111 856.4 43.8 413 23-467 4-426 (507)
24 PRK09099 type III secretion sy 100.0 4E-106 9E-111 847.1 44.5 416 15-462 19-439 (441)
25 PTZ00185 ATPase alpha subunit; 100.0 6E-105 1E-109 836.8 44.9 437 17-481 36-486 (574)
26 TIGR03498 FliI_clade3 flagella 100.0 8E-105 2E-109 834.1 43.7 414 22-462 1-418 (418)
27 PRK06820 type III secretion sy 100.0 2E-104 4E-109 833.3 44.3 415 12-462 19-439 (440)
28 PRK07960 fliI flagellum-specif 100.0 6E-105 1E-109 835.6 39.5 419 15-463 22-454 (455)
29 TIGR03496 FliI_clade1 flagella 100.0 4E-104 8E-109 828.7 44.0 407 22-458 1-411 (411)
30 PRK08472 fliI flagellum-specif 100.0 2E-104 5E-109 831.8 42.2 416 15-463 13-434 (434)
31 TIGR03497 FliI_clade2 flagella 100.0 1E-103 3E-108 825.1 44.5 408 22-462 1-413 (413)
32 PRK05922 type III secretion sy 100.0 4E-103 9E-108 821.3 43.6 414 15-463 14-432 (434)
33 PRK08149 ATP synthase SpaL; Va 100.0 7E-103 2E-107 818.9 44.1 414 17-462 3-427 (428)
34 PRK07594 type III secretion sy 100.0 1E-102 3E-107 818.1 44.5 410 16-462 17-431 (433)
35 PRK07196 fliI flagellum-specif 100.0 1E-102 2E-107 819.2 40.9 417 15-463 12-433 (434)
36 COG1156 NtpB Archaeal/vacuolar 100.0 8E-102 2E-106 783.6 35.1 457 17-485 3-459 (463)
37 TIGR02546 III_secr_ATP type II 100.0 2E-100 4E-105 805.2 41.8 414 17-462 2-421 (422)
38 PRK06002 fliI flagellum-specif 100.0 8E-100 2E-104 797.8 43.9 417 15-465 21-444 (450)
39 TIGR01026 fliI_yscN ATPase Fli 100.0 4E-99 9E-104 796.9 44.8 421 10-463 13-440 (440)
40 KOG1351 Vacuolar H+-ATPase V1 100.0 1.4E-98 3E-103 733.1 32.5 480 5-487 8-487 (489)
41 PRK07721 fliI flagellum-specif 100.0 8.2E-96 2E-100 771.3 44.1 417 15-463 13-435 (438)
42 PRK06793 fliI flagellum-specif 100.0 1.2E-95 3E-100 765.3 40.3 411 14-461 15-431 (432)
43 PRK06315 type III secretion sy 100.0 3E-95 7E-100 764.2 41.3 417 15-463 18-442 (442)
44 COG0055 AtpD F0F1-type ATP syn 100.0 5.7E-94 1.2E-98 720.6 30.7 430 20-472 2-451 (468)
45 cd01135 V_A-ATPase_B V/A-type 100.0 1.3E-92 2.8E-97 702.1 26.4 275 92-379 1-276 (276)
46 COG0056 AtpA F0F1-type ATP syn 100.0 1.6E-91 3.4E-96 716.1 34.8 420 18-468 25-447 (504)
47 PRK14698 V-type ATP synthase s 100.0 8.9E-89 1.9E-93 771.1 41.1 259 203-463 681-958 (1017)
48 cd01132 F1_ATPase_alpha F1 ATP 100.0 1.2E-89 2.5E-94 681.0 26.3 270 93-380 2-274 (274)
49 cd01133 F1-ATPase_beta F1 ATP 100.0 2.8E-89 6E-94 679.6 26.2 272 92-381 1-273 (274)
50 cd01136 ATPase_flagellum-secre 100.0 4.5E-86 9.8E-91 672.7 30.4 324 92-443 1-326 (326)
51 KOG1350 F0F1-type ATP synthase 100.0 6.5E-85 1.4E-89 642.5 21.2 431 18-472 49-501 (521)
52 COG1155 NtpA Archaeal/vacuolar 100.0 3.4E-84 7.4E-89 671.5 24.9 420 21-465 2-524 (588)
53 KOG1352 Vacuolar H+-ATPase V1 100.0 1E-82 2.2E-87 639.6 15.0 423 15-463 15-544 (618)
54 cd01134 V_A-ATPase_A V/A-type 100.0 3E-81 6.6E-86 635.5 22.7 235 125-379 123-369 (369)
55 PF00006 ATP-synt_ab: ATP synt 100.0 4.5E-70 9.7E-75 527.4 16.4 213 146-377 1-215 (215)
56 PRK12608 transcription termina 100.0 8.6E-69 1.9E-73 550.9 25.3 306 74-416 54-361 (380)
57 PRK09376 rho transcription ter 100.0 9.3E-61 2E-65 492.3 27.5 259 129-416 136-397 (416)
58 PRK12678 transcription termina 100.0 4.4E-60 9.6E-65 501.8 26.0 251 129-416 384-644 (672)
59 TIGR00767 rho transcription te 100.0 2.2E-54 4.7E-59 447.0 25.3 246 142-416 150-396 (415)
60 cd01128 rho_factor Transcripti 100.0 1.4E-50 3E-55 399.9 21.9 240 148-416 4-244 (249)
61 KOG1353 F0F1-type ATP synthase 100.0 2E-39 4.4E-44 311.7 12.4 319 17-457 17-336 (340)
62 COG1158 Rho Transcription term 100.0 3.4E-35 7.3E-40 292.7 17.6 238 148-414 161-399 (422)
63 cd01120 RecA-like_NTPases RecA 99.1 8.4E-09 1.8E-13 92.8 17.0 160 163-359 2-165 (165)
64 PF00306 ATP-synt_ab_C: ATP sy 98.9 5.8E-09 1.3E-13 91.4 7.2 85 395-480 2-98 (113)
65 PF02874 ATP-synt_ab_N: ATP sy 98.8 1.8E-08 3.9E-13 80.2 7.7 66 24-90 1-69 (69)
66 cd01394 radB RadB. The archaea 97.8 0.00027 6E-09 68.1 12.0 41 144-184 1-43 (218)
67 COG0467 RAD55 RecA-superfamily 97.6 0.0011 2.3E-08 66.0 13.8 184 142-366 3-200 (260)
68 smart00382 AAA ATPases associa 97.6 0.00017 3.6E-09 61.9 6.7 145 159-358 1-145 (148)
69 PF06745 KaiC: KaiC; InterPro 97.6 0.00032 6.9E-09 68.1 8.9 175 144-361 1-187 (226)
70 PRK09302 circadian clock prote 97.5 0.0015 3.2E-08 71.4 13.6 175 140-361 251-436 (509)
71 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.004 8.7E-08 62.3 13.2 41 144-184 4-60 (259)
72 PRK06067 flagellar accessory p 97.2 0.0013 2.7E-08 64.4 8.7 44 141-184 4-49 (234)
73 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0027 5.8E-08 61.7 8.6 123 144-283 1-129 (235)
74 cd01393 recA_like RecA is a b 97.0 0.0027 5.8E-08 61.3 8.2 41 144-184 1-43 (226)
75 TIGR02236 recomb_radA DNA repa 97.0 0.004 8.6E-08 63.6 9.9 126 142-284 75-207 (310)
76 PRK04328 hypothetical protein; 97.0 0.011 2.5E-07 58.6 12.7 60 143-218 4-65 (249)
77 PRK09361 radB DNA repair and r 96.9 0.0028 6E-08 61.5 8.0 44 141-184 2-47 (225)
78 TIGR02655 circ_KaiC circadian 96.9 0.012 2.6E-07 64.1 13.7 188 139-375 240-440 (484)
79 TIGR02012 tigrfam_recA protein 96.9 0.0024 5.3E-08 65.9 7.4 116 142-290 34-153 (321)
80 PRK09354 recA recombinase A; P 96.8 0.0025 5.5E-08 66.4 7.1 121 141-293 38-161 (349)
81 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.018 3.9E-07 55.8 12.0 41 144-184 2-44 (229)
82 cd00983 recA RecA is a bacter 96.7 0.0026 5.6E-08 65.8 6.2 111 141-283 33-147 (325)
83 PLN03187 meiotic recombination 96.7 0.0095 2.1E-07 62.2 10.2 127 140-284 104-236 (344)
84 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.014 3.1E-07 57.3 10.2 58 144-217 3-62 (237)
85 PRK08533 flagellar accessory p 96.5 0.067 1.4E-06 52.6 14.3 40 144-183 6-47 (230)
86 TIGR00416 sms DNA repair prote 96.4 0.021 4.5E-07 61.9 11.1 43 142-184 74-118 (454)
87 TIGR02238 recomb_DMC1 meiotic 96.4 0.012 2.7E-07 60.6 8.7 126 141-284 75-206 (313)
88 PLN03186 DNA repair protein RA 96.4 0.017 3.6E-07 60.3 9.4 125 142-284 103-233 (342)
89 cd01121 Sms Sms (bacterial rad 96.3 0.045 9.8E-07 57.8 12.6 44 141-184 61-106 (372)
90 PRK09302 circadian clock prote 96.3 0.042 9E-07 60.2 12.5 62 142-218 11-74 (509)
91 TIGR02655 circ_KaiC circadian 96.3 0.036 7.7E-07 60.5 11.8 62 143-219 2-65 (484)
92 PTZ00035 Rad51 protein; Provis 96.2 0.016 3.5E-07 60.3 8.3 128 139-284 95-228 (337)
93 PRK04301 radA DNA repair and r 96.1 0.032 7E-07 57.3 9.7 126 142-284 82-213 (317)
94 TIGR02237 recomb_radB DNA repa 96.1 0.068 1.5E-06 51.0 11.2 103 157-284 9-112 (209)
95 PRK09519 recA DNA recombinatio 96.0 0.014 3.1E-07 66.6 7.3 110 142-283 39-152 (790)
96 cd01122 GP4d_helicase GP4d_hel 96.0 0.11 2.4E-06 51.6 12.8 43 142-184 11-54 (271)
97 cd01124 KaiC KaiC is a circadi 95.9 0.28 6.1E-06 45.4 14.4 156 163-360 2-165 (187)
98 COG0563 Adk Adenylate kinase a 95.8 0.021 4.5E-07 54.2 6.4 27 162-188 2-28 (178)
99 PRK11823 DNA repair protein Ra 95.8 0.1 2.2E-06 56.4 12.4 43 142-184 60-104 (446)
100 TIGR02239 recomb_RAD51 DNA rep 95.7 0.045 9.7E-07 56.5 8.9 43 142-184 76-120 (316)
101 PF08423 Rad51: Rad51; InterP 95.7 0.068 1.5E-06 53.5 9.8 128 140-285 16-149 (256)
102 COG1155 NtpA Archaeal/vacuolar 95.6 0.024 5.2E-07 61.3 6.7 138 241-382 290-435 (588)
103 TIGR03880 KaiC_arch_3 KaiC dom 95.5 0.34 7.3E-06 46.9 13.8 172 147-359 1-178 (224)
104 cd00820 PEPCK_HprK Phosphoenol 95.4 0.018 3.9E-07 50.2 3.9 34 148-181 2-36 (107)
105 COG1124 DppF ABC-type dipeptid 95.3 0.014 3.1E-07 57.8 3.3 35 149-183 21-56 (252)
106 COG1116 TauB ABC-type nitrate/ 95.3 0.015 3.3E-07 57.7 3.5 36 148-183 16-52 (248)
107 PRK05800 cobU adenosylcobinami 95.3 0.03 6.5E-07 52.6 5.3 86 162-285 3-92 (170)
108 PF05496 RuvB_N: Holliday junc 95.1 0.054 1.2E-06 53.4 6.8 24 162-185 52-75 (233)
109 cd03222 ABC_RNaseL_inhibitor T 95.0 0.02 4.4E-07 54.1 3.5 35 149-183 14-48 (177)
110 cd00009 AAA The AAA+ (ATPases 95.0 0.14 3.1E-06 44.0 8.6 26 159-184 18-43 (151)
111 PF00004 AAA: ATPase family as 95.0 0.097 2.1E-06 45.3 7.4 23 163-185 1-23 (132)
112 cd03254 ABCC_Glucan_exporter_l 95.0 0.022 4.8E-07 55.2 3.6 31 153-183 22-52 (229)
113 TIGR01166 cbiO cobalt transpor 94.9 0.024 5.2E-07 53.4 3.6 28 155-182 13-40 (190)
114 COG4619 ABC-type uncharacteriz 94.9 0.023 4.9E-07 53.8 3.2 38 146-183 14-52 (223)
115 cd03229 ABC_Class3 This class 94.8 0.025 5.3E-07 53.0 3.4 29 155-183 21-49 (178)
116 cd03260 ABC_PstB_phosphate_tra 94.8 0.027 6E-07 54.5 3.8 32 153-184 19-50 (227)
117 cd03269 ABC_putative_ATPase Th 94.8 0.028 6.1E-07 53.7 3.8 31 153-183 19-49 (210)
118 TIGR02315 ABC_phnC phosphonate 94.7 0.025 5.4E-07 55.3 3.3 29 155-183 23-51 (243)
119 cd03292 ABC_FtsE_transporter F 94.7 0.029 6.4E-07 53.6 3.8 31 153-183 20-50 (214)
120 cd03225 ABC_cobalt_CbiO_domain 94.7 0.029 6.2E-07 53.7 3.6 31 153-183 20-50 (211)
121 TIGR02211 LolD_lipo_ex lipopro 94.7 0.029 6.4E-07 54.0 3.7 31 153-183 24-54 (221)
122 PF05729 NACHT: NACHT domain 94.7 0.12 2.6E-06 46.3 7.5 24 162-185 2-25 (166)
123 cd03224 ABC_TM1139_LivF_branch 94.7 0.029 6.3E-07 54.0 3.6 29 154-182 20-48 (222)
124 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.7 0.031 6.6E-07 53.8 3.7 34 150-183 19-53 (218)
125 cd03265 ABC_DrrA DrrA is the A 94.7 0.03 6.4E-07 54.1 3.6 32 152-183 18-49 (220)
126 TIGR03608 L_ocin_972_ABC putat 94.7 0.03 6.5E-07 53.2 3.6 31 153-183 17-47 (206)
127 cd03262 ABC_HisP_GlnQ_permease 94.6 0.028 6E-07 53.8 3.4 29 155-183 21-49 (213)
128 cd00544 CobU Adenosylcobinamid 94.6 0.092 2E-06 49.3 6.6 86 163-286 2-90 (169)
129 TIGR00960 3a0501s02 Type II (G 94.6 0.032 7E-07 53.6 3.7 30 154-183 23-52 (216)
130 cd03258 ABC_MetN_methionine_tr 94.5 0.03 6.4E-07 54.5 3.4 29 155-183 26-54 (233)
131 PRK13540 cytochrome c biogenes 94.5 0.034 7.5E-07 52.9 3.7 31 153-183 20-50 (200)
132 cd03218 ABC_YhbG The ABC trans 94.5 0.029 6.4E-07 54.4 3.3 29 155-183 21-49 (232)
133 TIGR03410 urea_trans_UrtE urea 94.5 0.031 6.8E-07 54.2 3.5 32 152-183 18-49 (230)
134 COG3842 PotA ABC-type spermidi 94.5 0.035 7.6E-07 58.1 3.9 37 147-183 17-54 (352)
135 PRK11124 artP arginine transpo 94.5 0.034 7.3E-07 54.5 3.7 30 154-183 22-51 (242)
136 cd03256 ABC_PhnC_transporter A 94.5 0.033 7.1E-07 54.3 3.5 29 155-183 22-50 (241)
137 PF00005 ABC_tran: ABC transpo 94.5 0.033 7.2E-07 49.2 3.2 30 155-184 6-35 (137)
138 cd03298 ABC_ThiQ_thiamine_tran 94.5 0.039 8.4E-07 52.8 3.9 32 152-183 16-47 (211)
139 PRK15093 antimicrobial peptide 94.5 0.04 8.7E-07 57.0 4.3 36 148-183 20-56 (330)
140 cd03216 ABC_Carb_Monos_I This 94.5 0.039 8.4E-07 51.0 3.7 29 155-183 21-49 (163)
141 cd03226 ABC_cobalt_CbiO_domain 94.5 0.036 7.8E-07 52.9 3.6 29 155-183 21-49 (205)
142 cd03261 ABC_Org_Solvent_Resist 94.4 0.037 8E-07 54.0 3.8 34 150-183 15-49 (235)
143 cd03296 ABC_CysA_sulfate_impor 94.4 0.036 7.9E-07 54.2 3.7 31 153-183 21-51 (239)
144 cd03235 ABC_Metallic_Cations A 94.4 0.03 6.5E-07 53.7 3.0 29 155-183 20-48 (213)
145 cd03219 ABC_Mj1267_LivG_branch 94.4 0.03 6.5E-07 54.5 3.1 28 155-182 21-48 (236)
146 cd03238 ABC_UvrA The excision 94.4 0.037 7.9E-07 52.3 3.5 35 148-182 8-43 (176)
147 PF13207 AAA_17: AAA domain; P 94.4 0.034 7.4E-07 48.0 3.1 24 162-185 1-24 (121)
148 PF13401 AAA_22: AAA domain; P 94.4 0.1 2.2E-06 45.5 6.1 93 161-282 5-100 (131)
149 PRK14274 phosphate ABC transpo 94.4 0.039 8.4E-07 54.8 3.8 31 153-183 31-61 (259)
150 PF13173 AAA_14: AAA domain 94.4 0.17 3.6E-06 44.7 7.5 24 160-183 2-25 (128)
151 cd03251 ABCC_MsbA MsbA is an e 94.4 0.039 8.5E-07 53.6 3.7 31 153-183 21-51 (234)
152 cd03259 ABC_Carb_Solutes_like 94.4 0.038 8.2E-07 53.0 3.6 30 154-183 20-49 (213)
153 PF00154 RecA: recA bacterial 94.3 0.092 2E-06 54.4 6.5 121 142-294 32-155 (322)
154 cd03293 ABC_NrtD_SsuB_transpor 94.3 0.035 7.7E-07 53.5 3.3 34 150-183 19-53 (220)
155 PRK14240 phosphate transporter 94.3 0.037 8E-07 54.5 3.5 31 152-182 21-51 (250)
156 cd03266 ABC_NatA_sodium_export 94.3 0.04 8.6E-07 53.0 3.6 30 154-183 25-54 (218)
157 TIGR03864 PQQ_ABC_ATP ABC tran 94.3 0.041 8.8E-07 53.7 3.7 29 155-183 22-50 (236)
158 cd03247 ABCC_cytochrome_bd The 94.3 0.044 9.6E-07 51.2 3.8 32 152-183 20-51 (178)
159 PRK14247 phosphate ABC transpo 94.3 0.037 8E-07 54.5 3.4 30 154-183 23-52 (250)
160 PRK13539 cytochrome c biogenes 94.3 0.041 8.8E-07 52.8 3.6 34 150-183 17-51 (207)
161 cd03257 ABC_NikE_OppD_transpor 94.3 0.037 7.9E-07 53.5 3.3 30 154-183 25-54 (228)
162 COG2256 MGS1 ATPase related to 94.3 0.13 2.7E-06 54.5 7.4 32 258-290 94-125 (436)
163 PRK13543 cytochrome c biogenes 94.3 0.037 8E-07 53.3 3.3 31 153-183 30-60 (214)
164 cd03230 ABC_DR_subfamily_A Thi 94.3 0.044 9.6E-07 51.0 3.7 29 155-183 21-49 (173)
165 PRK14255 phosphate ABC transpo 94.3 0.037 8E-07 54.5 3.3 28 155-182 26-53 (252)
166 cd03295 ABC_OpuCA_Osmoprotecti 94.2 0.043 9.4E-07 53.8 3.8 30 154-183 21-50 (242)
167 PRK14267 phosphate ABC transpo 94.2 0.039 8.5E-07 54.4 3.5 31 153-183 23-53 (253)
168 cd03245 ABCC_bacteriocin_expor 94.2 0.043 9.3E-07 52.8 3.7 31 153-183 23-53 (220)
169 cd03301 ABC_MalK_N The N-termi 94.2 0.043 9.3E-07 52.5 3.6 31 153-183 19-49 (213)
170 cd03252 ABCC_Hemolysin The ABC 94.2 0.042 9.1E-07 53.6 3.6 32 152-183 20-51 (237)
171 PRK11701 phnK phosphonate C-P 94.2 0.044 9.4E-07 54.3 3.7 32 152-183 24-55 (258)
172 cd03215 ABC_Carb_Monos_II This 94.2 0.044 9.6E-07 51.4 3.6 30 154-183 20-49 (182)
173 PRK11248 tauB taurine transpor 94.2 0.044 9.6E-07 54.5 3.7 31 153-183 20-50 (255)
174 PRK13541 cytochrome c biogenes 94.2 0.041 9E-07 52.2 3.4 33 151-183 17-49 (195)
175 cd03250 ABCC_MRP_domain1 Domai 94.2 0.042 9E-07 52.4 3.4 30 154-183 25-54 (204)
176 TIGR01978 sufC FeS assembly AT 94.1 0.04 8.6E-07 53.8 3.3 31 153-183 19-49 (243)
177 PRK10253 iron-enterobactin tra 94.1 0.037 8E-07 55.2 3.1 29 155-183 28-56 (265)
178 PRK10584 putative ABC transpor 94.1 0.044 9.6E-07 53.1 3.6 31 153-183 29-59 (228)
179 TIGR02770 nickel_nikD nickel i 94.1 0.043 9.4E-07 53.4 3.5 30 154-183 6-35 (230)
180 cd03268 ABC_BcrA_bacitracin_re 94.1 0.047 1E-06 52.1 3.7 31 153-183 19-49 (208)
181 cd03231 ABC_CcmA_heme_exporter 94.1 0.044 9.6E-07 52.3 3.5 32 152-183 18-49 (201)
182 PRK11629 lolD lipoprotein tran 94.1 0.048 1E-06 53.2 3.8 34 150-183 24-58 (233)
183 PRK09493 glnQ glutamine ABC tr 94.1 0.046 9.9E-07 53.5 3.7 34 150-183 16-50 (240)
184 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.1 0.044 9.6E-07 53.4 3.6 34 150-183 18-52 (238)
185 PRK10575 iron-hydroxamate tran 94.1 0.041 9E-07 54.8 3.4 34 150-183 26-60 (265)
186 PRK14241 phosphate transporter 94.1 0.046 9.9E-07 54.2 3.7 30 154-183 24-53 (258)
187 PRK14250 phosphate ABC transpo 94.1 0.047 1E-06 53.6 3.7 32 152-183 21-52 (241)
188 PRK15177 Vi polysaccharide exp 94.1 0.047 1E-06 52.8 3.6 31 153-183 6-36 (213)
189 PRK15079 oligopeptide ABC tran 94.1 0.054 1.2E-06 56.2 4.3 36 148-183 34-70 (331)
190 TIGR02673 FtsE cell division A 94.1 0.047 1E-06 52.3 3.6 30 154-183 22-51 (214)
191 cd03246 ABCC_Protease_Secretio 94.1 0.054 1.2E-06 50.4 3.8 29 155-183 23-51 (173)
192 cd03263 ABC_subfamily_A The AB 94.1 0.049 1.1E-06 52.4 3.7 31 153-183 21-51 (220)
193 PRK10895 lipopolysaccharide AB 94.1 0.048 1E-06 53.3 3.7 31 153-183 22-52 (241)
194 TIGR03411 urea_trans_UrtD urea 94.0 0.049 1.1E-06 53.3 3.7 30 154-183 22-51 (242)
195 PRK11264 putative amino-acid A 94.0 0.046 1E-06 53.7 3.5 31 153-183 22-52 (250)
196 cd03223 ABCD_peroxisomal_ALDP 94.0 0.049 1.1E-06 50.5 3.5 31 153-183 20-50 (166)
197 PRK09473 oppD oligopeptide tra 94.0 0.052 1.1E-06 56.3 4.0 36 148-183 29-65 (330)
198 TIGR03005 ectoine_ehuA ectoine 94.0 0.05 1.1E-06 53.7 3.7 31 153-183 19-49 (252)
199 PRK10771 thiQ thiamine transpo 94.0 0.05 1.1E-06 53.0 3.7 32 152-183 17-48 (232)
200 PRK11022 dppD dipeptide transp 94.0 0.057 1.2E-06 55.9 4.2 36 148-183 20-56 (326)
201 cd03290 ABCC_SUR1_N The SUR do 94.0 0.053 1.1E-06 52.2 3.7 29 155-183 22-50 (218)
202 PRK14273 phosphate ABC transpo 94.0 0.048 1E-06 53.8 3.5 29 155-183 28-56 (254)
203 TIGR01188 drrA daunorubicin re 94.0 0.05 1.1E-06 55.5 3.7 34 150-183 8-42 (302)
204 cd03217 ABC_FeS_Assembly ABC-t 94.0 0.046 9.9E-07 52.2 3.2 30 154-183 20-49 (200)
205 PRK15056 manganese/iron transp 93.9 0.051 1.1E-06 54.4 3.7 32 152-183 25-56 (272)
206 PRK11247 ssuB aliphatic sulfon 93.9 0.052 1.1E-06 54.2 3.7 31 153-183 31-61 (257)
207 PRK14262 phosphate ABC transpo 93.9 0.053 1.1E-06 53.4 3.7 29 154-182 23-51 (250)
208 COG4608 AppF ABC-type oligopep 93.9 0.054 1.2E-06 54.5 3.7 37 148-184 26-63 (268)
209 PRK11144 modC molybdate transp 93.9 0.061 1.3E-06 56.2 4.3 33 151-183 15-47 (352)
210 PRK10247 putative ABC transpor 93.9 0.052 1.1E-06 52.7 3.6 31 153-183 26-56 (225)
211 PRK14237 phosphate transporter 93.9 0.055 1.2E-06 54.0 3.8 31 153-183 39-69 (267)
212 PRK09544 znuC high-affinity zi 93.9 0.056 1.2E-06 53.7 3.8 30 154-183 24-53 (251)
213 PRK10851 sulfate/thiosulfate t 93.9 0.053 1.2E-06 56.8 3.8 35 149-183 16-51 (353)
214 TIGR01184 ntrCD nitrate transp 93.9 0.054 1.2E-06 52.9 3.6 29 155-183 6-34 (230)
215 PRK11831 putative ABC transpor 93.9 0.054 1.2E-06 54.2 3.7 32 152-183 25-56 (269)
216 PRK14248 phosphate ABC transpo 93.9 0.053 1.2E-06 54.1 3.6 28 155-182 42-69 (268)
217 PRK14242 phosphate transporter 93.9 0.055 1.2E-06 53.4 3.7 29 155-183 27-55 (253)
218 PRK14239 phosphate transporter 93.9 0.055 1.2E-06 53.3 3.7 30 154-183 25-54 (252)
219 PRK10908 cell division protein 93.9 0.056 1.2E-06 52.2 3.7 29 155-183 23-51 (222)
220 TIGR00968 3a0106s01 sulfate AB 93.8 0.051 1.1E-06 53.2 3.4 29 155-183 21-49 (237)
221 COG0444 DppD ABC-type dipeptid 93.8 0.064 1.4E-06 55.1 4.1 37 148-184 18-55 (316)
222 PRK13648 cbiO cobalt transport 93.8 0.058 1.3E-06 53.9 3.8 32 152-183 27-58 (269)
223 cd03214 ABC_Iron-Siderophores_ 93.8 0.061 1.3E-06 50.4 3.7 30 154-183 19-48 (180)
224 cd03233 ABC_PDR_domain1 The pl 93.8 0.054 1.2E-06 51.8 3.4 30 154-183 27-56 (202)
225 TIGR02323 CP_lyasePhnK phospho 93.8 0.053 1.2E-06 53.4 3.4 30 154-183 23-52 (253)
226 PRK14266 phosphate ABC transpo 93.8 0.06 1.3E-06 53.0 3.8 32 152-183 21-52 (250)
227 PRK14245 phosphate ABC transpo 93.8 0.059 1.3E-06 53.1 3.7 30 153-182 22-51 (250)
228 TIGR02324 CP_lyasePhnL phospho 93.8 0.056 1.2E-06 52.2 3.5 31 153-183 27-57 (224)
229 TIGR00972 3a0107s01c2 phosphat 93.8 0.057 1.2E-06 53.1 3.6 31 153-183 20-50 (247)
230 cd03267 ABC_NatA_like Similar 93.8 0.057 1.2E-06 52.9 3.6 31 153-183 40-70 (236)
231 cd03236 ABC_RNaseL_inhibitor_d 93.8 0.045 9.8E-07 54.6 2.9 33 151-183 17-49 (255)
232 PRK13645 cbiO cobalt transport 93.8 0.058 1.3E-06 54.5 3.7 30 154-183 31-60 (289)
233 PRK13632 cbiO cobalt transport 93.8 0.059 1.3E-06 54.0 3.7 29 155-183 30-58 (271)
234 PRK14272 phosphate ABC transpo 93.7 0.053 1.2E-06 53.3 3.4 29 155-183 25-53 (252)
235 PRK14244 phosphate ABC transpo 93.7 0.061 1.3E-06 53.0 3.8 31 153-183 24-54 (251)
236 PRK13649 cbiO cobalt transport 93.7 0.059 1.3E-06 54.1 3.7 30 154-183 27-56 (280)
237 TIGR03265 PhnT2 putative 2-ami 93.7 0.059 1.3E-06 56.4 3.8 32 152-183 22-53 (353)
238 PRK13548 hmuV hemin importer A 93.7 0.059 1.3E-06 53.6 3.6 29 155-183 23-51 (258)
239 PRK11300 livG leucine/isoleuci 93.7 0.058 1.3E-06 53.2 3.6 31 153-183 24-54 (255)
240 cd03213 ABCG_EPDR ABCG transpo 93.7 0.058 1.2E-06 51.3 3.4 31 153-183 28-58 (194)
241 PRK14269 phosphate ABC transpo 93.7 0.063 1.4E-06 52.8 3.8 32 152-183 20-51 (246)
242 COG1136 SalX ABC-type antimicr 93.7 0.059 1.3E-06 53.1 3.5 34 148-181 18-52 (226)
243 PRK13641 cbiO cobalt transport 93.7 0.062 1.3E-06 54.4 3.8 32 152-183 25-56 (287)
244 TIGR01288 nodI ATP-binding ABC 93.7 0.058 1.3E-06 55.0 3.6 34 150-183 19-53 (303)
245 cd03248 ABCC_TAP TAP, the Tran 93.7 0.062 1.3E-06 52.0 3.7 29 155-183 35-63 (226)
246 PRK10418 nikD nickel transport 93.7 0.06 1.3E-06 53.3 3.6 31 153-183 22-52 (254)
247 PRK14261 phosphate ABC transpo 93.7 0.062 1.4E-06 53.0 3.7 29 154-182 26-54 (253)
248 cd03253 ABCC_ATM1_transporter 93.7 0.064 1.4E-06 52.2 3.7 32 152-183 19-50 (236)
249 PRK13638 cbiO cobalt transport 93.7 0.058 1.2E-06 54.0 3.5 31 153-183 20-50 (271)
250 TIGR03740 galliderm_ABC gallid 93.7 0.066 1.4E-06 51.8 3.8 29 155-183 21-49 (223)
251 cd03369 ABCC_NFT1 Domain 2 of 93.6 0.062 1.3E-06 51.3 3.5 30 154-183 28-57 (207)
252 COG1134 TagH ABC-type polysacc 93.6 0.06 1.3E-06 53.5 3.4 34 149-182 41-75 (249)
253 cd03228 ABCC_MRP_Like The MRP 93.6 0.062 1.3E-06 49.9 3.4 29 155-183 23-51 (171)
254 PRK10744 pstB phosphate transp 93.6 0.062 1.3E-06 53.4 3.6 30 154-183 33-62 (260)
255 PRK13538 cytochrome c biogenes 93.6 0.062 1.3E-06 51.3 3.5 32 152-183 19-50 (204)
256 PRK14268 phosphate ABC transpo 93.6 0.065 1.4E-06 53.1 3.8 31 152-182 30-60 (258)
257 PRK11650 ugpC glycerol-3-phosp 93.6 0.061 1.3E-06 56.4 3.7 34 150-183 19-53 (356)
258 PRK14256 phosphate ABC transpo 93.6 0.062 1.3E-06 53.0 3.5 29 155-183 25-53 (252)
259 PRK14238 phosphate transporter 93.6 0.067 1.4E-06 53.6 3.8 31 153-183 43-73 (271)
260 PRK14243 phosphate transporter 93.6 0.062 1.3E-06 53.6 3.5 31 153-183 29-59 (264)
261 PRK10419 nikE nickel transport 93.6 0.062 1.4E-06 53.8 3.5 31 152-182 30-60 (268)
262 PRK14271 phosphate ABC transpo 93.6 0.066 1.4E-06 53.9 3.7 32 152-183 39-70 (276)
263 TIGR01189 ccmA heme ABC export 93.5 0.071 1.5E-06 50.6 3.7 34 150-183 15-49 (198)
264 TIGR01277 thiQ thiamine ABC tr 93.5 0.071 1.5E-06 51.2 3.8 32 152-183 16-47 (213)
265 cd03234 ABCG_White The White s 93.5 0.063 1.4E-06 52.1 3.4 31 153-183 26-56 (226)
266 PRK11432 fbpC ferric transport 93.5 0.065 1.4E-06 56.1 3.7 35 149-183 20-55 (351)
267 PRK08118 topology modulation p 93.5 0.062 1.4E-06 50.1 3.3 25 161-185 2-26 (167)
268 cd03264 ABC_drug_resistance_li 93.5 0.061 1.3E-06 51.4 3.3 29 153-182 19-47 (211)
269 TIGR02769 nickel_nikE nickel i 93.5 0.061 1.3E-06 53.6 3.4 34 150-183 26-60 (265)
270 PF13671 AAA_33: AAA domain; P 93.5 0.83 1.8E-05 40.3 10.4 23 163-185 2-24 (143)
271 PRK14253 phosphate ABC transpo 93.5 0.065 1.4E-06 52.7 3.5 29 155-183 24-52 (249)
272 PRK14270 phosphate ABC transpo 93.5 0.067 1.5E-06 52.7 3.6 29 155-183 25-53 (251)
273 PRK14275 phosphate ABC transpo 93.5 0.069 1.5E-06 54.0 3.8 33 150-182 54-87 (286)
274 cd03294 ABC_Pro_Gly_Bertaine T 93.5 0.07 1.5E-06 53.4 3.7 32 152-183 42-73 (269)
275 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.5 0.072 1.6E-06 51.8 3.7 34 150-183 37-71 (224)
276 PRK13646 cbiO cobalt transport 93.5 0.07 1.5E-06 54.0 3.7 31 153-183 26-56 (286)
277 PRK09984 phosphonate/organopho 93.5 0.062 1.3E-06 53.4 3.3 30 154-183 24-53 (262)
278 COG4172 ABC-type uncharacteriz 93.5 0.066 1.4E-06 56.8 3.5 37 148-184 300-337 (534)
279 PF00931 NB-ARC: NB-ARC domain 93.4 0.18 3.9E-06 50.1 6.5 94 159-282 18-114 (287)
280 TIGR03771 anch_rpt_ABC anchore 93.4 0.059 1.3E-06 52.3 3.0 28 156-183 2-29 (223)
281 PRK13547 hmuV hemin importer A 93.4 0.068 1.5E-06 53.8 3.5 31 153-183 20-50 (272)
282 PRK11614 livF leucine/isoleuci 93.4 0.07 1.5E-06 52.1 3.5 28 155-182 26-53 (237)
283 CHL00131 ycf16 sulfate ABC tra 93.4 0.061 1.3E-06 52.9 3.0 28 155-182 28-55 (252)
284 COG4167 SapF ABC-type antimicr 93.4 0.067 1.4E-06 51.3 3.1 28 155-182 34-61 (267)
285 cd03300 ABC_PotA_N PotA is an 93.3 0.073 1.6E-06 51.9 3.5 30 154-183 20-49 (232)
286 PRK11308 dppF dipeptide transp 93.3 0.074 1.6E-06 55.1 3.7 36 148-183 28-64 (327)
287 PRK14235 phosphate transporter 93.3 0.081 1.7E-06 52.9 3.9 31 153-183 38-68 (267)
288 PRK13643 cbiO cobalt transport 93.3 0.074 1.6E-06 53.9 3.6 31 152-182 24-54 (288)
289 PRK13546 teichoic acids export 93.3 0.077 1.7E-06 53.2 3.7 32 152-183 42-73 (264)
290 PRK09452 potA putrescine/sperm 93.3 0.075 1.6E-06 56.2 3.7 34 150-183 29-63 (375)
291 PRK14251 phosphate ABC transpo 93.3 0.081 1.8E-06 52.1 3.7 30 154-183 24-53 (251)
292 PRK14249 phosphate ABC transpo 93.3 0.079 1.7E-06 52.2 3.7 30 154-183 24-53 (251)
293 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.3 0.073 1.6E-06 48.3 3.1 29 155-183 21-49 (144)
294 COG3839 MalK ABC-type sugar tr 93.2 0.074 1.6E-06 55.4 3.5 33 150-182 18-51 (338)
295 COG3840 ThiQ ABC-type thiamine 93.2 0.074 1.6E-06 51.0 3.2 29 155-183 20-48 (231)
296 PRK07261 topology modulation p 93.2 0.073 1.6E-06 49.8 3.2 25 161-185 1-25 (171)
297 PRK15112 antimicrobial peptide 93.2 0.079 1.7E-06 52.9 3.6 32 152-183 31-62 (267)
298 PRK10619 histidine/lysine/argi 93.2 0.084 1.8E-06 52.3 3.8 31 153-183 24-54 (257)
299 PRK14265 phosphate ABC transpo 93.2 0.082 1.8E-06 53.1 3.7 30 153-182 39-68 (274)
300 PRK11231 fecE iron-dicitrate t 93.2 0.081 1.8E-06 52.3 3.6 29 155-183 23-51 (255)
301 PRK14252 phosphate ABC transpo 93.2 0.085 1.9E-06 52.5 3.8 31 152-182 34-64 (265)
302 TIGR02314 ABC_MetN D-methionin 93.2 0.08 1.7E-06 55.3 3.7 36 148-183 18-54 (343)
303 PRK14259 phosphate ABC transpo 93.2 0.081 1.8E-06 53.0 3.6 31 153-183 32-62 (269)
304 TIGR02982 heterocyst_DevA ABC 93.1 0.089 1.9E-06 50.8 3.7 30 153-182 24-53 (220)
305 PRK14254 phosphate ABC transpo 93.1 0.085 1.8E-06 53.4 3.8 34 150-183 54-88 (285)
306 cd03232 ABC_PDR_domain2 The pl 93.1 0.084 1.8E-06 50.0 3.5 28 155-182 28-55 (192)
307 cd00267 ABC_ATPase ABC (ATP-bi 93.1 0.096 2.1E-06 47.8 3.7 32 152-183 17-48 (157)
308 PRK13637 cbiO cobalt transport 93.1 0.085 1.8E-06 53.4 3.7 34 150-183 22-56 (287)
309 PRK13639 cbiO cobalt transport 93.1 0.085 1.8E-06 53.0 3.7 32 152-183 20-51 (275)
310 COG3638 ABC-type phosphate/pho 93.1 0.098 2.1E-06 51.9 3.9 41 144-184 13-54 (258)
311 cd03244 ABCC_MRP_domain2 Domai 93.1 0.088 1.9E-06 50.7 3.7 30 154-183 24-53 (221)
312 TIGR03522 GldA_ABC_ATP gliding 93.1 0.087 1.9E-06 53.7 3.8 33 150-182 17-50 (301)
313 PRK13651 cobalt transporter AT 93.1 0.085 1.8E-06 54.1 3.7 34 149-182 21-55 (305)
314 PRK14260 phosphate ABC transpo 93.1 0.088 1.9E-06 52.3 3.7 31 153-183 26-56 (259)
315 PRK11000 maltose/maltodextrin 93.1 0.084 1.8E-06 55.6 3.7 34 150-183 18-52 (369)
316 cd03237 ABC_RNaseL_inhibitor_d 93.1 0.073 1.6E-06 52.8 3.1 28 156-183 21-48 (246)
317 PRK14236 phosphate transporter 93.1 0.091 2E-06 52.6 3.8 32 152-183 43-74 (272)
318 PRK13647 cbiO cobalt transport 93.0 0.09 1.9E-06 52.8 3.7 29 155-183 26-54 (274)
319 COG4181 Predicted ABC-type tra 93.0 0.081 1.8E-06 50.3 3.1 27 155-181 31-57 (228)
320 cd03291 ABCC_CFTR1 The CFTR su 93.0 0.088 1.9E-06 53.4 3.7 32 152-183 55-86 (282)
321 PRK13342 recombination factor 93.0 0.35 7.6E-06 51.6 8.4 26 160-185 36-61 (413)
322 PRK14263 phosphate ABC transpo 93.0 0.096 2.1E-06 52.3 3.8 31 153-183 27-57 (261)
323 PRK14264 phosphate ABC transpo 93.0 0.094 2E-06 53.6 3.8 35 149-183 59-94 (305)
324 PRK14246 phosphate ABC transpo 92.9 0.091 2E-06 52.3 3.6 31 153-183 29-59 (257)
325 PRK09580 sufC cysteine desulfu 92.9 0.082 1.8E-06 51.8 3.2 29 155-183 22-50 (248)
326 PRK13650 cbiO cobalt transport 92.9 0.098 2.1E-06 52.7 3.8 32 152-183 25-56 (279)
327 PRK13640 cbiO cobalt transport 92.9 0.098 2.1E-06 52.8 3.8 30 154-183 27-56 (282)
328 TIGR02142 modC_ABC molybdenum 92.9 0.11 2.5E-06 54.2 4.3 32 152-183 15-46 (354)
329 PRK13536 nodulation factor exp 92.8 0.097 2.1E-06 54.5 3.7 36 148-183 54-90 (340)
330 PRK13644 cbiO cobalt transport 92.8 0.1 2.2E-06 52.4 3.8 32 152-183 20-51 (274)
331 PRK09536 btuD corrinoid ABC tr 92.8 0.11 2.4E-06 55.4 4.2 35 149-183 17-52 (402)
332 PRK14258 phosphate ABC transpo 92.8 0.1 2.2E-06 52.0 3.6 31 153-183 26-56 (261)
333 cd03288 ABCC_SUR2 The SUR doma 92.8 0.11 2.3E-06 51.6 3.8 29 155-183 42-70 (257)
334 cd03289 ABCC_CFTR2 The CFTR su 92.8 0.1 2.2E-06 52.8 3.7 30 155-184 25-54 (275)
335 PRK03695 vitamin B12-transport 92.7 0.086 1.9E-06 52.1 3.0 30 153-182 15-44 (248)
336 COG1126 GlnQ ABC-type polar am 92.7 0.094 2E-06 51.4 3.2 34 148-181 15-49 (240)
337 COG1120 FepC ABC-type cobalami 92.7 0.095 2E-06 52.6 3.3 35 148-182 15-50 (258)
338 cd03299 ABC_ModC_like Archeal 92.7 0.11 2.4E-06 50.7 3.8 29 155-183 20-48 (235)
339 PRK13635 cbiO cobalt transport 92.7 0.11 2.3E-06 52.4 3.7 29 155-183 28-56 (279)
340 COG0468 RecA RecA/RadA recombi 92.7 0.2 4.3E-06 50.9 5.6 114 141-285 39-157 (279)
341 TIGR03015 pepcterm_ATPase puta 92.7 0.91 2E-05 44.7 10.3 24 161-184 44-67 (269)
342 PRK13634 cbiO cobalt transport 92.7 0.11 2.4E-06 52.7 3.7 29 155-183 28-56 (290)
343 PRK11153 metN DL-methionine tr 92.6 0.11 2.3E-06 54.2 3.7 35 149-183 19-54 (343)
344 PF04665 Pox_A32: Poxvirus A32 92.6 0.46 1E-05 47.3 8.0 23 162-184 15-37 (241)
345 PRK11607 potG putrescine trans 92.6 0.11 2.3E-06 55.0 3.8 31 153-183 38-68 (377)
346 TIGR03258 PhnT 2-aminoethylpho 92.6 0.11 2.3E-06 54.8 3.7 33 150-182 20-53 (362)
347 cd03270 ABC_UvrA_I The excisio 92.6 0.074 1.6E-06 51.9 2.4 30 148-177 8-38 (226)
348 PRK13631 cbiO cobalt transport 92.6 0.11 2.4E-06 53.6 3.8 35 149-183 40-75 (320)
349 TIGR03873 F420-0_ABC_ATP propo 92.6 0.11 2.3E-06 51.5 3.5 29 155-183 22-50 (256)
350 PRK13652 cbiO cobalt transport 92.6 0.12 2.5E-06 52.1 3.8 34 150-183 19-53 (277)
351 PRK13642 cbiO cobalt transport 92.5 0.12 2.6E-06 52.0 3.7 34 150-183 22-56 (277)
352 cd03297 ABC_ModC_molybdenum_tr 92.5 0.12 2.6E-06 49.6 3.6 31 152-183 16-46 (214)
353 KOG0057 Mitochondrial Fe/S clu 92.5 0.12 2.5E-06 56.6 3.8 35 150-184 367-402 (591)
354 PF13481 AAA_25: AAA domain; P 92.4 0.71 1.5E-05 43.1 8.8 41 144-184 14-56 (193)
355 TIGR01186 proV glycine betaine 92.4 0.1 2.2E-06 54.9 3.3 35 150-184 8-43 (363)
356 PRK13537 nodulation ABC transp 92.4 0.11 2.4E-06 53.1 3.5 35 149-183 21-56 (306)
357 PRK00411 cdc6 cell division co 92.4 0.45 9.7E-06 49.9 8.1 96 158-282 53-151 (394)
358 PRK13633 cobalt transporter AT 92.3 0.12 2.7E-06 51.9 3.7 34 150-183 25-59 (280)
359 PRK10636 putative ABC transpor 92.3 0.1 2.3E-06 58.8 3.4 32 152-183 19-50 (638)
360 COG1125 OpuBA ABC-type proline 92.2 0.13 2.8E-06 51.7 3.5 37 147-183 13-50 (309)
361 TIGR02868 CydC thiol reductant 92.2 0.11 2.3E-06 57.0 3.3 33 152-184 353-385 (529)
362 PLN03073 ABC transporter F fam 92.2 0.1 2.2E-06 59.7 3.2 33 150-182 192-225 (718)
363 PRK14257 phosphate ABC transpo 92.2 0.13 2.8E-06 53.4 3.6 32 153-184 101-132 (329)
364 PRK05973 replicative DNA helic 92.1 1 2.2E-05 44.8 9.7 28 157-184 61-88 (237)
365 COG1127 Ttg2A ABC-type transpo 92.0 0.15 3.3E-06 50.6 3.7 38 147-184 19-58 (263)
366 PRK11147 ABC transporter ATPas 92.0 0.12 2.5E-06 58.3 3.3 32 152-183 21-52 (635)
367 TIGR03269 met_CoM_red_A2 methy 92.0 0.13 2.9E-06 56.3 3.7 34 150-183 15-49 (520)
368 COG1123 ATPase components of v 91.9 0.15 3.3E-06 56.0 4.0 36 148-183 304-340 (539)
369 PF13238 AAA_18: AAA domain; P 91.9 0.13 2.8E-06 44.3 2.7 22 163-184 1-22 (129)
370 KOG0062 ATPase component of AB 91.8 0.1 2.2E-06 56.7 2.5 31 152-182 98-128 (582)
371 PRK13636 cbiO cobalt transport 91.8 0.16 3.5E-06 51.3 3.7 34 150-183 21-55 (283)
372 PRK10762 D-ribose transporter 91.8 0.14 3E-06 55.9 3.5 35 149-183 18-53 (501)
373 KOG1969 DNA replication checkp 91.7 0.39 8.5E-06 54.3 6.8 87 160-264 325-421 (877)
374 PRK14974 cell division protein 91.6 1.4 3.1E-05 46.0 10.6 27 158-184 138-164 (336)
375 COG0488 Uup ATPase components 91.6 0.12 2.7E-06 56.9 2.9 32 152-183 21-52 (530)
376 PRK15064 ABC transporter ATP-b 91.5 0.15 3.2E-06 56.0 3.5 34 150-183 16-50 (530)
377 PRK11819 putative ABC transpor 91.5 0.15 3.2E-06 56.5 3.5 35 149-183 21-56 (556)
378 cd01853 Toc34_like Toc34-like 91.5 0.93 2E-05 45.2 8.7 24 160-183 31-54 (249)
379 COG1122 CbiO ABC-type cobalt t 91.4 0.18 3.9E-06 50.0 3.5 32 149-180 18-50 (235)
380 PRK10938 putative molybdenum t 91.4 0.16 3.4E-06 55.2 3.4 35 149-183 17-52 (490)
381 PRK10261 glutathione transport 91.4 0.2 4.4E-06 56.3 4.3 36 148-183 337-373 (623)
382 PRK11176 lipid transporter ATP 91.3 0.16 3.6E-06 56.2 3.5 32 153-184 362-393 (582)
383 COG4987 CydC ABC-type transpor 91.3 0.15 3.3E-06 55.7 3.1 36 149-184 352-388 (573)
384 PRK10078 ribose 1,5-bisphospho 91.3 0.16 3.4E-06 47.9 2.9 26 159-184 1-26 (186)
385 TIGR02633 xylG D-xylose ABC tr 91.3 0.17 3.7E-06 55.1 3.5 35 149-183 15-50 (500)
386 TIGR00235 udk uridine kinase. 91.3 0.17 3.7E-06 48.5 3.1 26 159-184 5-30 (207)
387 COG4586 ABC-type uncharacteriz 91.2 0.16 3.5E-06 51.4 2.9 33 149-181 39-71 (325)
388 COG4525 TauB ABC-type taurine 91.2 0.18 3.9E-06 48.9 3.1 31 152-182 23-53 (259)
389 PRK12377 putative replication 91.2 0.45 9.7E-06 47.6 6.1 24 161-184 102-125 (248)
390 PRK13549 xylose transporter AT 91.2 0.17 3.7E-06 55.2 3.5 35 149-183 19-54 (506)
391 COG2274 SunT ABC-type bacterio 91.2 0.16 3.4E-06 58.0 3.2 30 154-183 493-522 (709)
392 PF01926 MMR_HSR1: 50S ribosom 91.2 0.16 3.5E-06 43.6 2.6 21 162-182 1-21 (116)
393 PRK14530 adenylate kinase; Pro 91.1 0.2 4.4E-06 48.3 3.5 27 159-185 2-28 (215)
394 PRK10070 glycine betaine trans 91.1 0.19 4.1E-06 53.6 3.6 31 153-183 47-77 (400)
395 PRK15134 microcin C ABC transp 91.0 0.19 4.1E-06 55.3 3.6 35 149-183 23-58 (529)
396 PRK00300 gmk guanylate kinase; 91.0 0.19 4.1E-06 47.7 3.2 27 158-184 3-29 (205)
397 PRK10636 putative ABC transpor 91.0 0.17 3.8E-06 57.0 3.4 34 150-183 327-361 (638)
398 PF13521 AAA_28: AAA domain; P 91.0 0.14 3E-06 47.0 2.2 22 162-183 1-22 (163)
399 TIGR02633 xylG D-xylose ABC tr 91.0 0.18 3.8E-06 55.0 3.3 34 149-182 274-308 (500)
400 PRK09700 D-allose transporter 91.0 0.19 4E-06 55.0 3.5 34 150-183 278-312 (510)
401 PRK13949 shikimate kinase; Pro 91.0 0.37 8.1E-06 45.0 5.0 26 161-186 2-27 (169)
402 PRK10261 glutathione transport 91.0 0.19 4.2E-06 56.5 3.7 36 148-183 29-65 (623)
403 PRK10790 putative multidrug tr 90.9 0.18 3.8E-06 56.1 3.3 33 152-184 359-391 (592)
404 COG4555 NatA ABC-type Na+ tran 90.9 0.2 4.3E-06 48.8 3.2 36 148-183 15-51 (245)
405 PRK08181 transposase; Validate 90.9 0.29 6.4E-06 49.4 4.6 27 158-184 104-130 (269)
406 TIGR03263 guanyl_kin guanylate 90.9 0.17 3.8E-06 46.8 2.7 25 160-184 1-25 (180)
407 PF03193 DUF258: Protein of un 90.9 0.1 2.2E-06 48.8 1.2 34 150-183 25-58 (161)
408 TIGR03415 ABC_choXWV_ATP choli 90.9 0.21 4.6E-06 52.9 3.7 32 152-183 42-73 (382)
409 PRK15064 ABC transporter ATP-b 90.9 0.19 4.1E-06 55.2 3.4 31 153-183 338-368 (530)
410 TIGR02322 phosphon_PhnN phosph 90.9 0.21 4.5E-06 46.4 3.3 25 160-184 1-25 (179)
411 COG0411 LivG ABC-type branched 90.9 0.092 2E-06 52.1 0.9 37 146-182 15-52 (250)
412 PRK08233 hypothetical protein; 90.8 0.21 4.6E-06 46.1 3.2 25 160-184 3-27 (182)
413 TIGR03719 ABC_ABC_ChvD ATP-bin 90.8 0.2 4.2E-06 55.5 3.4 32 152-183 23-54 (552)
414 PF08477 Miro: Miro-like prote 90.7 0.22 4.7E-06 42.5 3.0 23 162-184 1-23 (119)
415 PRK10982 galactose/methyl gala 90.7 0.2 4.4E-06 54.4 3.5 34 150-183 13-47 (491)
416 TIGR01193 bacteriocin_ABC ABC- 90.7 0.19 4.2E-06 57.1 3.4 32 153-184 493-524 (708)
417 COG1131 CcmA ABC-type multidru 90.7 0.23 4.9E-06 50.7 3.6 38 147-184 17-55 (293)
418 COG0488 Uup ATPase components 90.7 0.21 4.5E-06 55.2 3.5 34 152-185 340-373 (530)
419 PRK11147 ABC transporter ATPas 90.7 0.2 4.3E-06 56.5 3.4 30 154-183 339-368 (635)
420 PRK09700 D-allose transporter 90.7 0.21 4.5E-06 54.6 3.5 34 150-183 20-54 (510)
421 PRK06217 hypothetical protein; 90.6 0.22 4.7E-06 46.8 3.2 26 161-186 2-27 (183)
422 PRK11174 cysteine/glutathione 90.6 0.2 4.4E-06 55.5 3.4 34 150-183 365-399 (588)
423 PRK05480 uridine/cytidine kina 90.6 0.23 5E-06 47.5 3.3 27 158-184 4-30 (209)
424 TIGR02857 CydD thiol reductant 90.6 0.2 4.4E-06 54.8 3.3 32 153-184 341-372 (529)
425 PRK14531 adenylate kinase; Pro 90.6 0.23 5.1E-06 46.7 3.3 25 161-185 3-27 (183)
426 PRK15439 autoinducer 2 ABC tra 90.5 0.24 5.1E-06 54.3 3.8 34 150-183 26-60 (510)
427 TIGR03796 NHPM_micro_ABC1 NHPM 90.4 0.21 4.5E-06 56.9 3.3 32 153-184 498-529 (710)
428 TIGR03797 NHPM_micro_ABC2 NHPM 90.4 0.22 4.7E-06 56.5 3.4 32 153-184 472-503 (686)
429 TIGR03269 met_CoM_red_A2 methy 90.4 0.25 5.4E-06 54.1 3.8 35 149-183 298-333 (520)
430 PRK10522 multidrug transporter 90.3 0.21 4.6E-06 55.1 3.2 31 153-183 342-372 (547)
431 TIGR00455 apsK adenylylsulfate 90.3 1.8 3.8E-05 40.5 9.0 27 158-184 16-42 (184)
432 cd03115 SRP The signal recogni 90.2 5.2 0.00011 36.8 12.0 22 163-184 3-24 (173)
433 PRK10416 signal recognition pa 90.1 2.4 5.1E-05 44.0 10.5 27 158-184 112-138 (318)
434 TIGR03375 type_I_sec_LssB type 90.1 0.24 5.2E-06 56.3 3.4 33 152-184 483-515 (694)
435 COG1066 Sms Predicted ATP-depe 90.1 0.84 1.8E-05 48.7 7.2 43 142-184 73-117 (456)
436 PRK11288 araG L-arabinose tran 90.1 0.26 5.7E-06 53.8 3.6 34 150-183 19-53 (501)
437 PRK10762 D-ribose transporter 90.0 0.24 5.3E-06 54.0 3.3 30 153-182 271-300 (501)
438 PRK13549 xylose transporter AT 90.0 0.25 5.5E-06 53.9 3.5 35 148-182 275-310 (506)
439 PRK10789 putative multidrug tr 89.9 0.24 5.3E-06 54.9 3.3 31 154-184 335-365 (569)
440 PRK10938 putative molybdenum t 89.9 0.25 5.4E-06 53.6 3.3 30 153-182 279-308 (490)
441 PF01583 APS_kinase: Adenylyls 89.8 3 6.5E-05 38.8 9.9 87 159-281 1-87 (156)
442 TIGR01842 type_I_sec_PrtD type 89.8 0.25 5.4E-06 54.4 3.2 33 152-184 336-368 (544)
443 PRK11288 araG L-arabinose tran 89.7 0.25 5.5E-06 53.9 3.2 29 155-183 274-302 (501)
444 COG0552 FtsY Signal recognitio 89.7 0.98 2.1E-05 46.9 7.2 86 161-274 140-227 (340)
445 TIGR02928 orc1/cdc6 family rep 89.7 2.7 5.8E-05 43.5 10.6 102 158-282 38-142 (365)
446 TIGR02204 MsbA_rel ABC transpo 89.5 0.31 6.7E-06 53.9 3.7 31 154-184 360-390 (576)
447 TIGR02203 MsbA_lipidA lipid A 89.4 0.31 6.8E-06 53.7 3.6 33 152-184 350-382 (571)
448 TIGR03238 dnd_assoc_3 dnd syst 89.4 0.16 3.4E-06 55.3 1.2 39 140-178 10-50 (504)
449 PRK09825 idnK D-gluconate kina 89.4 0.32 7E-06 45.8 3.2 27 159-185 2-28 (176)
450 PRK11160 cysteine/glutathione 89.4 0.28 6E-06 54.5 3.2 30 155-184 361-390 (574)
451 TIGR01194 cyc_pep_trnsptr cycl 89.3 0.28 6.1E-06 54.3 3.2 30 155-184 363-392 (555)
452 PRK11819 putative ABC transpor 89.2 0.32 6.9E-06 53.9 3.5 30 153-182 343-372 (556)
453 PRK13545 tagH teichoic acids e 89.2 0.34 7.3E-06 53.5 3.7 31 153-183 43-73 (549)
454 cd03280 ABC_MutS2 MutS2 homolo 89.2 0.4 8.7E-06 45.7 3.8 33 149-181 16-49 (200)
455 PRK15439 autoinducer 2 ABC tra 89.2 0.3 6.6E-06 53.4 3.3 28 155-182 284-311 (510)
456 PRK13409 putative ATPase RIL; 89.1 0.3 6.6E-06 54.6 3.3 34 150-183 89-122 (590)
457 TIGR00635 ruvB Holliday juncti 89.1 0.83 1.8E-05 46.2 6.2 26 160-185 30-55 (305)
458 cd03243 ABC_MutS_homologs The 89.1 0.48 1E-05 45.2 4.2 27 156-182 25-51 (202)
459 COG1474 CDC6 Cdc6-related prot 89.1 0.92 2E-05 47.9 6.7 100 153-283 32-137 (366)
460 PLN03073 ABC transporter F fam 89.1 0.32 6.8E-06 55.8 3.4 31 153-183 528-558 (718)
461 PRK03839 putative kinase; Prov 89.0 0.35 7.6E-06 45.0 3.2 25 162-186 2-26 (180)
462 PLN00020 ribulose bisphosphate 89.0 1 2.2E-05 47.8 6.8 23 163-185 151-173 (413)
463 TIGR01192 chvA glucan exporter 89.0 0.31 6.7E-06 54.4 3.3 31 154-184 355-385 (585)
464 COG4136 ABC-type uncharacteriz 89.0 0.38 8.3E-06 44.9 3.2 30 154-183 22-51 (213)
465 PRK15134 microcin C ABC transp 88.9 0.33 7.2E-06 53.3 3.4 34 149-182 300-334 (529)
466 TIGR00958 3a01208 Conjugate Tr 88.9 0.34 7.4E-06 55.3 3.6 33 152-184 499-531 (711)
467 COG1117 PstB ABC-type phosphat 88.9 0.36 7.9E-06 47.4 3.2 34 152-185 25-58 (253)
468 TIGR00665 DnaB replicative DNA 88.8 0.27 5.9E-06 52.6 2.6 43 142-184 176-219 (434)
469 TIGR01360 aden_kin_iso1 adenyl 88.8 0.41 8.9E-06 44.4 3.5 26 160-185 3-28 (188)
470 COG1135 AbcC ABC-type metal io 88.7 0.44 9.6E-06 49.0 3.8 35 147-181 18-53 (339)
471 cd02023 UMPK Uridine monophosp 88.7 0.33 7.2E-06 45.9 2.8 21 163-183 2-22 (198)
472 COG1118 CysA ABC-type sulfate/ 88.6 0.38 8.3E-06 49.5 3.3 30 153-182 21-50 (345)
473 PF03796 DnaB_C: DnaB-like hel 88.6 0.22 4.7E-06 49.5 1.5 42 144-185 2-44 (259)
474 cd01428 ADK Adenylate kinase ( 88.5 0.35 7.5E-06 45.2 2.8 24 162-185 1-24 (194)
475 cd04155 Arl3 Arl3 subfamily. 88.5 0.32 6.9E-06 44.2 2.5 27 157-183 11-37 (173)
476 PRK09183 transposase/IS protei 88.5 0.29 6.2E-06 49.1 2.3 35 150-184 92-126 (259)
477 KOG0060 Long-chain acyl-CoA tr 88.4 0.44 9.6E-06 52.6 3.8 46 136-182 437-483 (659)
478 TIGR03719 ABC_ABC_ChvD ATP-bin 88.4 0.36 7.7E-06 53.4 3.2 30 153-182 341-370 (552)
479 PRK12724 flagellar biosynthesi 88.3 3.9 8.4E-05 44.1 10.7 27 158-184 221-247 (432)
480 cd02019 NK Nucleoside/nucleoti 88.3 0.46 1E-05 37.6 2.9 21 163-183 2-22 (69)
481 PRK13657 cyclic beta-1,2-gluca 88.2 0.38 8.3E-06 53.5 3.3 32 153-184 354-385 (588)
482 PRK00131 aroK shikimate kinase 88.2 0.47 1E-05 43.2 3.4 27 159-185 3-29 (175)
483 COG0218 Predicted GTPase [Gene 88.2 9.9 0.00022 36.9 12.4 122 159-297 23-169 (200)
484 COG4988 CydD ABC-type transpor 88.2 0.4 8.7E-06 52.9 3.3 125 152-288 339-493 (559)
485 PRK10982 galactose/methyl gala 88.2 0.39 8.5E-06 52.2 3.3 33 150-182 263-296 (491)
486 PRK00080 ruvB Holliday junctio 88.2 1 2.2E-05 46.4 6.3 25 161-185 52-76 (328)
487 COG1132 MdlB ABC-type multidru 88.1 0.39 8.5E-06 53.1 3.3 33 153-185 348-380 (567)
488 PF13555 AAA_29: P-loop contai 88.1 0.49 1.1E-05 37.3 2.9 21 160-180 23-43 (62)
489 COG1121 ZnuC ABC-type Mn/Zn tr 88.0 0.46 1E-05 47.6 3.4 34 149-182 18-52 (254)
490 PTZ00088 adenylate kinase 1; P 87.9 0.49 1.1E-05 46.6 3.5 28 158-185 4-31 (229)
491 PTZ00301 uridine kinase; Provi 87.7 0.42 9.2E-06 46.5 2.9 22 163-184 6-27 (210)
492 COG1119 ModF ABC-type molybden 87.7 0.43 9.2E-06 47.6 2.9 34 149-182 45-79 (257)
493 PRK14527 adenylate kinase; Pro 87.7 0.52 1.1E-05 44.5 3.5 29 158-186 4-32 (191)
494 PF03308 ArgK: ArgK protein; 87.7 0.44 9.6E-06 47.9 3.0 34 151-184 19-53 (266)
495 PRK14721 flhF flagellar biosyn 87.6 0.48 1E-05 50.9 3.5 28 156-183 187-214 (420)
496 COG4107 PhnK ABC-type phosphon 87.6 0.48 1E-05 45.2 3.0 32 152-183 24-55 (258)
497 cd03278 ABC_SMC_barmotin Barmo 87.6 0.58 1.2E-05 44.8 3.7 37 146-183 7-45 (197)
498 cd02025 PanK Pantothenate kina 87.5 0.43 9.4E-06 46.6 2.9 22 163-184 2-23 (220)
499 KOG2543 Origin recognition com 87.5 3.8 8.1E-05 43.5 9.7 109 163-317 33-146 (438)
500 PF07728 AAA_5: AAA domain (dy 87.4 1.1 2.4E-05 39.7 5.2 23 163-185 2-24 (139)
No 1
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=5e-126 Score=992.81 Aligned_cols=465 Identities=83% Similarity=1.288 Sum_probs=440.9
Q ss_pred eeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecCc
Q 011320 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSL 99 (488)
Q Consensus 20 ~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG~ 99 (488)
+|++|++|.|+++++.|++.+++||+|+|...+|....|||++|+++.+++|||++++||+.+|++|.+||++++||||+
T Consensus 1 ~y~~v~~i~G~~i~~~g~~~~~~Ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg~ 80 (466)
T TIGR01040 1 EYRTVSGVNGPLVILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSE 80 (466)
T ss_pred CCccceEEEccEEEEECCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCeEEEEEcCCCCCcccCCCEEEECCCccEEEcCc
Confidence 47899999999999999978999999999644565578999999999999999999999986699999999999999999
Q ss_pred cccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHHHH
Q 011320 100 DMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ 179 (488)
Q Consensus 100 ~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~ 179 (488)
+|||||+|++|+|||+.+++....++++++.||+|++|.++++||+||||+||+|+|||+|||+||||++|+|||+|++|
T Consensus 81 ~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~L~~~ 160 (466)
T TIGR01040 81 DMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQ 160 (466)
T ss_pred ccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHHHHHH
Confidence 99999999999999999888777788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHH
Q 011320 180 ICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259 (488)
Q Consensus 180 i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~ti 259 (488)
|++|+..... ..|| +..|++++++|||++||||+|+.+|++++|+++|+++||++|++|+|+||++|++++|+|+|+
T Consensus 161 i~~~~~~~~~-~~aD--~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~a~~~a~ti 237 (466)
T TIGR01040 161 ICRQAGLVKL-PTKD--VHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERIITPRLALTT 237 (466)
T ss_pred HHHhhccccc-cccc--cccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHhhhHHH
Confidence 9999863210 0145 456677778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCCC
Q 011320 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDI 339 (488)
Q Consensus 260 AEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD~ 339 (488)
|||||+++|+||||++||+||||+|+||||+++||||+++|||||||+.||+|+||||++++++||||+||+|++|+||+
T Consensus 238 AEyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~~~~GSITai~tV~~~~dD~ 317 (466)
T TIGR01040 238 AEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDI 317 (466)
T ss_pred HHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCCCCCcceEEEEEEECCCCCC
Confidence 99999889999999999999999999999999999999999999999999999999999754589999999999999999
Q ss_pred CCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHhCC
Q 011320 340 THPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGE 419 (488)
Q Consensus 340 ~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~~G~ 419 (488)
+|||+|+++|||||||||||+||++||||||||+.|+||+|+.++++++++++|+++++++++.|+++++|+++++|.|.
T Consensus 318 ~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~~v~~~~~~~~~h~~~a~~l~~~y~~~~~L~~ig~y~G~ 397 (466)
T TIGR01040 318 THPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGE 397 (466)
T ss_pred CCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998898899999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhcccccc
Q 011320 420 EALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAA 487 (488)
Q Consensus 420 d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (488)
|+++|++...+.+++.|++.||+|++++..+++++++..|++++.+|++++++||+++|++||+++.|
T Consensus 398 d~l~d~a~~~l~~~~~i~~~FL~Q~~~~~~~~~~~l~~~w~ll~~~~~~~~~r~~~~~~~~~~~~~~~ 465 (466)
T TIGR01040 398 EALSSEDLLYLEFLDKFEKNFIAQGPYENRTIFESLDIAWQLLRIFPKEMLKRIPAKILEEFYPRKSA 465 (466)
T ss_pred CcCCHHHHHHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHHHHhCCHHHhccCCHHHHHHhcccccC
Confidence 99999999999999999779999999999999999999999999999999999999999999998765
No 2
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.1e-122 Score=979.02 Aligned_cols=457 Identities=66% Similarity=1.068 Sum_probs=430.2
Q ss_pred ceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecC
Q 011320 19 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVS 98 (488)
Q Consensus 19 ~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG 98 (488)
+.||+|++|.|++++++|+..+++||+|+|...++....|||++|+++.+.+++|+++.||++.|++|.+||++++||||
T Consensus 2 ~~yg~V~~i~g~~v~v~g~~~~~~ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~vg 81 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVEGVEGVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVS 81 (460)
T ss_pred ceeEEEEEEECcEEEEeccCCCCCCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEccCCCCCCCCCCEEEeCCCccEEEcC
Confidence 57999999999999999998899999999964455557899999999999999999999998239999999999999999
Q ss_pred ccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHHH
Q 011320 99 LDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAA 178 (488)
Q Consensus 99 ~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~ 178 (488)
++|||||+|++|+|||+.+++.+..++++++.||+|++|.++++||+||||+||+|+|||+|||+||||++|+|||+|++
T Consensus 82 ~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~ 161 (460)
T PRK04196 82 EDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHNELAA 161 (460)
T ss_pred cccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCccHHHH
Confidence 99999999999999999998877778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHH
Q 011320 179 QICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALT 258 (488)
Q Consensus 179 ~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~t 258 (488)
||++++. +| +..++++|||++||||.+++.++.+++.+.++|+||++|++|||+||.+|++++|+|+|
T Consensus 162 ~ia~~~~-------~d-----~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~t 229 (460)
T PRK04196 162 QIARQAK-------VL-----GEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALT 229 (460)
T ss_pred HHHHhhh-------hc-----cCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 9999975 33 12245699999999996555555677777788999999999999999999999999999
Q ss_pred HHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCC
Q 011320 259 TAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDD 338 (488)
Q Consensus 259 iAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD 338 (488)
||||||+|||+|||||+||+||||+|+||||+++||||+++|||||+|+.||+||||||+.++++||||+||+|++|+||
T Consensus 230 iAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~~~~GSITai~~V~~~gdD 309 (460)
T PRK04196 230 AAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIKGKKGSITQIPILTMPDDD 309 (460)
T ss_pred HHHHHHHhcCCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCCCCCeeeEEEEEEEcCCCC
Confidence 99999977999999999999999999999999999999999999999999999999999986568999999999999999
Q ss_pred CCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHhC
Q 011320 339 ITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVG 418 (488)
Q Consensus 339 ~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~~G 418 (488)
++|||+|+++|||||||+|||+||++||||||||+.|+||+|+.++++++..++|+++++++++.|+++++|+++++|.|
T Consensus 310 ~~dpI~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~~~~~~~~~~~~~~~~a~~l~~~y~~~~~l~~~~~~~G 389 (460)
T PRK04196 310 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGKTREDHKDVANQLYAAYARGKDLRELAAIVG 389 (460)
T ss_pred CCCchhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhccccCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998877677778999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhcccccc
Q 011320 419 EEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAA 487 (488)
Q Consensus 419 ~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (488)
.++++|+++..+.+++++.+.||+|+++++.+++++++.+|.+++.++.+.++++++++++|||+++.+
T Consensus 390 ~~~l~d~~~~~~~~~~~~~~~fL~Q~~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~l~~~~~~~~~~ 458 (460)
T PRK04196 390 EEALSERDRKYLKFADAFEREFVNQGFDENRSIEETLDLGWELLSILPESELKRIKDEYIEKYHPKYRG 458 (460)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999779999999999999999999999999999999999999999999999765
No 3
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.9e-122 Score=974.87 Aligned_cols=453 Identities=64% Similarity=1.050 Sum_probs=425.9
Q ss_pred eeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCE-EEEcCCeeeEecC
Q 011320 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTT-VQFTGEVLKTPVS 98 (488)
Q Consensus 20 ~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~-V~~tg~~~~VpvG 98 (488)
+|++|++|.|++++++|+..+++||+|+|...++....|||++|+++.+++|||+++.||++ |+. |.+||++++||||
T Consensus 1 ~y~~v~~i~g~iv~v~g~~~~~~ge~~~i~~~~~~~~~geVv~~~~~~~~l~~~~~t~gi~~-g~~~V~~tg~~~~v~vg 79 (458)
T TIGR01041 1 EYSTITEIAGPLVFVEGVEPVAYNEIVEIETPDGEKRRGQVLDSSEGLAVVQVFEGTTGLDP-TGTKVRFTGETLKLPVS 79 (458)
T ss_pred CccEEEEEEccEEEEEccCCCCcCCEEEEEcCCCcEEEEEEEEEECCEEEEEEecCCcCcCC-CCcEEEECCCceEEEcC
Confidence 48999999999999999988999999999644555578999999999999999999999987 655 9999999999999
Q ss_pred ccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHHH
Q 011320 99 LDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAA 178 (488)
Q Consensus 99 ~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~ 178 (488)
++|||||+|++|+|||+.+++....++++++.||+|++|.++++||+||||+||+|+|||+|||+||||++|+|||+|++
T Consensus 80 ~~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~L~~ 159 (458)
T TIGR01041 80 EDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELAA 159 (458)
T ss_pred hhhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHHHHH
Confidence 99999999999999999988877778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHH
Q 011320 179 QICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALT 258 (488)
Q Consensus 179 ~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~t 258 (488)
||++|+. +| +..++++|||++||||.+++.++.+++.+.++|+|||+|++|||+||++|++++|+|+|
T Consensus 160 ~ia~~~~-------ad-----~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~t 227 (458)
T TIGR01041 160 QIARQAT-------VR-----GEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALT 227 (458)
T ss_pred HHHHhhc-------cc-----CCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999975 33 11234699999999995555555666777778999999999999999999999999999
Q ss_pred HHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCC
Q 011320 259 TAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDD 338 (488)
Q Consensus 259 iAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD 338 (488)
+|||||+|+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+.++++||||+||+|++|+||
T Consensus 228 iAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~~~~GSITai~tV~~~gdD 307 (458)
T TIGR01041 228 AAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVKGKKGSITQMPILTMPGDD 307 (458)
T ss_pred HHHHHHHccCCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCCCCCcceEEEEEEEcCCCC
Confidence 99999977999999999999999999999999999999999999999999999999999976568999999999999999
Q ss_pred CCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHhC
Q 011320 339 ITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVG 418 (488)
Q Consensus 339 ~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~~G 418 (488)
++|||+|+++|||||||+|||+||++||||||||+.|+||+|+..++++++.++|+++++++++.|+++++|+++++|+|
T Consensus 308 ~~dPI~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~~~~~~~~~a~~l~~~y~~~~~L~~i~~~~G 387 (458)
T TIGR01041 308 ITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHKDVSDQLYAAYAEGRDLRGLVAIVG 387 (458)
T ss_pred CCCchHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999888888889999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhcccc
Q 011320 419 EEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRD 485 (488)
Q Consensus 419 ~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (488)
.|+++|+++..+.++++|++.||+|+++++.+++++++.+|++++.++.+.+.++++++++|||++.
T Consensus 388 ~d~l~d~~~~~~~~~~~i~~~fL~Q~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 454 (458)
T TIGR01041 388 EEALSERDRKYLKFADLFERRFVRQGRNENRSIEETLDIGWELLSILPESELKRIDEEYIEKYHPKY 454 (458)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999975699999999999999999999999999999999999999999999974
No 4
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=7.5e-122 Score=938.53 Aligned_cols=417 Identities=28% Similarity=0.463 Sum_probs=394.2
Q ss_pred CccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCce-eEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCe
Q 011320 14 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTM-RRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEV 92 (488)
Q Consensus 14 ~~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~-~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~ 92 (488)
+++..+.+|+|++|+|.++++.|+ .+++||+|+|+.+++.. ..|||++|+++++++|||++..|+++ |++|.++|++
T Consensus 18 ~~~~~~~~G~v~~v~G~~lea~g~-~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~~gv~~-g~~V~~~~~~ 95 (441)
T COG1157 18 NTDPYKRRGRLTRVTGLLLEAVGP-QARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEGVSP-GAEVVPTGRP 95 (441)
T ss_pred cCCcceEEEEEEEEeeeEEEEecC-CCcccceEEEEecCCCCceeEEEEEEcCCeEEEeccCccccCCC-CCEEEecCCc
Confidence 447888999999999999999986 57999999998765432 39999999999999999999999996 9999999999
Q ss_pred eeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCC
Q 011320 93 LKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (488)
Q Consensus 93 ~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~G 172 (488)
++||+|++|||||+|++|+|||+.+.+....++|+...||||+.|.+++++|.||||+||+|+|||+|||+|||+++|||
T Consensus 96 ~~v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVG 175 (441)
T COG1157 96 LSVPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVG 175 (441)
T ss_pred cccccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCc
Confidence 99999999999999999999999888888889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHh
Q 011320 173 HNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (488)
Q Consensus 173 Kt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~ 251 (488)
|||||+||++++. || ++|+++|||| ||+.||+++.|+++| ++|||+|++|||+||.+|..
T Consensus 176 KStLLgMiar~t~-------aD-----------v~ViaLIGERGREVrEFIE~~Lg~eg-l~rsViVvATSD~s~l~R~~ 236 (441)
T COG1157 176 KSTLLGMIARNTE-------AD-----------VNVIALIGERGREVREFIEKDLGEEG-LKRSVVVVATSDESALMRLK 236 (441)
T ss_pred HHHHHHHHhcccc-------CC-----------EEEEEEeeccchhHHHHHHHhcchhh-ccceEEEEECCCCCHHHHHH
Confidence 9999999999875 77 9999999999 999999999999998 99999999999999999999
Q ss_pred HHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeE
Q 011320 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPI 331 (488)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~ 331 (488)
++++|+||||||| ||||+|||||||+||||+|+|||++++||||+++|||||||+.||+|+||||+ +.+||||+|||
T Consensus 237 aa~~At~IAEyFR-DqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~--~~~GsITafYT 313 (441)
T COG1157 237 AAFTATTIAEYFR-DQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGN--GDKGSITAFYT 313 (441)
T ss_pred HHHHHHHHHHHHH-hCCCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcCC--CCCCcEEEEEE
Confidence 9999999999999 99999999999999999999999999999999999999999999999999998 45899999999
Q ss_pred EeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHH---HHHHHHHccc
Q 011320 332 LTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSN---QLYANYAIGK 408 (488)
Q Consensus 332 v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~---~l~~~y~~~~ 408 (488)
|+++|||++|||+|++|+||||||||||+||++|||||||++.|+||+|++++ +++|++.|+ ++++.|++.+
T Consensus 314 VLveGDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i~-----~~~h~~~a~~~r~lls~y~e~e 388 (441)
T COG1157 314 VLVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQIV-----SEEHRKAARRLRQLLSRYEENE 388 (441)
T ss_pred EEeecCCCCCchhhhhhhhccceEEeeHhHHhcCCCCCcchHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999754 579999985 6889999999
Q ss_pred cHHHHHHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011320 409 DVQAMKAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 409 ~l~~~~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
+|+++|+|. |.|+ +.+.++++.+.|+ +||+|+.+|..+++++++.|.+++.
T Consensus 389 dLi~iGaY~~G~D~---~~D~Ai~~~p~i~-~fL~Q~~~e~~~~~~t~~~L~~~~~ 440 (441)
T COG1157 389 DLIRIGAYQKGSDP---ELDKAIKLYPKIE-QFLKQGIDEKSSFEETLEQLEAILS 440 (441)
T ss_pred HHHHhcCccCCCCH---HHHHHHHhhHHHH-HHHcCCccccCCHHHHHHHHHHHhc
Confidence 999999998 8765 5666799999996 9999999999999999999988764
No 5
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=7.9e-115 Score=906.95 Aligned_cols=432 Identities=41% Similarity=0.693 Sum_probs=408.2
Q ss_pred cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEec
Q 011320 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (488)
Q Consensus 18 ~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vpv 97 (488)
.+.||+|++|.|+++++++ +.+++||+|+|...++ ...|||++++++.+.+++|++++||+ .|++|.+||++++|||
T Consensus 2 ~~~~g~v~~i~G~~v~v~~-~~~~~ge~~~i~~~~~-~~~geVi~~~~~~v~~~~~~~t~Gl~-~g~~V~~tg~~~~vpv 78 (436)
T PRK02118 2 QKIYTKITDITGNVITVEA-EGVGYGELATVERKDG-SSLAQVIRLDGDKVTLQVFGGTRGIS-TGDEVVFLGRPMQVTY 78 (436)
T ss_pred cceeEEEEEEECcEEEEEe-CCCCCCCEEEEEcCCC-CEEEEEEEEcCCEEEEEEecCCcCCC-CCCEEEeCCCceEEEc
Confidence 3579999999999999998 4689999999965445 46899999999999999999999999 5999999999999999
Q ss_pred CccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHH
Q 011320 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 177 (488)
Q Consensus 98 G~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll 177 (488)
|++|||||||++|+|||+++++.. ..++++++||||++|.+++++|+||||+||+|+||+||||+||||++|+|||+|+
T Consensus 79 g~~lLGRV~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~ 157 (436)
T PRK02118 79 SESLLGRRFNGSGKPIDGGPELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALL 157 (436)
T ss_pred CccccCCEEccCCcccCCCCCCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHHH
Confidence 999999999999999999887754 4589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHH
Q 011320 178 AQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIAL 257 (488)
Q Consensus 178 ~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~ 257 (488)
+||++|++ +| ++||++||||.+++.++++++.++++++||++|+++||+||++|++++++|+
T Consensus 158 ~~ia~~~~-------~~-----------v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~Al 219 (436)
T PRK02118 158 ARIALQAE-------AD-----------IIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMAL 219 (436)
T ss_pred HHHHHhhC-------CC-----------eEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHH
Confidence 99999975 45 8999999999888888889999999999999999999999999999999999
Q ss_pred HHHHHhhHhcC-CeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecC
Q 011320 258 TTAEYLAYECG-KHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPN 336 (488)
Q Consensus 258 tiAEyfr~d~G-~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~ 336 (488)
|+||||| |+| +||||++||+||||+|+||||+++||||+++|||||||++|++||||||+.++ +||||+||+|++|+
T Consensus 220 tiAEyfr-d~g~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~~-~GSITai~~V~~p~ 297 (436)
T PRK02118 220 AVAEKFA-LEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFED-GGSITIIAVTTMPG 297 (436)
T ss_pred HHHHHHH-hcCCCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCCC-CeeEEEEEEEEcCC
Confidence 9999999 676 99999999999999999999999999999999999999999999999998744 89999999999999
Q ss_pred CCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHH
Q 011320 337 DDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 416 (488)
Q Consensus 337 dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~ 416 (488)
||++|||||+++|||||||||||+| |||+.|+||+|+.++++ +++++|+++|+++++.|+++++++++.++
T Consensus 298 DD~tdPi~d~~~silDGqIvLsR~l--------ID~l~S~SRl~~~v~g~-~t~~~h~~~a~~l~~~~a~y~e~~dli~i 368 (436)
T PRK02118 298 DDVTHPVPDNTGYITEGQFYLRRGR--------IDPFGSLSRLKQLVIGK-KTREDHGDLMNAMIRLYADSREAKEKMAM 368 (436)
T ss_pred CCcCccHHHHHHHhcCcEEEecccc--------ccCccccccccccccCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 99999999999999987 78889999999999999999999999994
Q ss_pred hCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhccccc
Q 011320 417 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDA 486 (488)
Q Consensus 417 ~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (488)
| .+||++|+++++++++|++.|++|. +..+++||++..|++|+.+|++++++||+++|+|||+++.
T Consensus 369 -G-~eLs~~d~~~l~~~~~~e~~~~~~g--~~~~~~etl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 434 (436)
T PRK02118 369 -G-FKLSNWDEKLLKFSELFESRLMDLE--VNIPLEEALDLGWKILAQCFHPEEVGIKEQLIDKYWPKNC 434 (436)
T ss_pred -h-hhcCHHHHHHHHHHHHHHHHhhcCC--CcccHHHHHHHHHHHHHHCCHHHHhcCCHHHHHHhhcccc
Confidence 8 5999999999999999997777777 6889999999999999999999999999999999999754
No 6
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=4.5e-112 Score=904.60 Aligned_cols=438 Identities=26% Similarity=0.378 Sum_probs=410.0
Q ss_pred cCCccc-cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcC
Q 011320 12 EGTLEV-AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTG 90 (488)
Q Consensus 12 ~~~~~~-~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg 90 (488)
.|+..+ .+.+|+|++|.|++++++|+..+++||+|+|. +| ..|+|++++++.+.+++|+++.||+. |++|.+||
T Consensus 18 ~~~~~~~~~~~G~V~~v~g~~v~v~g~~~~~~ge~~~i~--~~--~~g~Vi~~~~~~~~~~~~~~~~gi~~-g~~V~~~~ 92 (502)
T PRK09281 18 NFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFP--GG--VYGIALNLEEDNVGAVILGDYEDIKE-GDTVKRTG 92 (502)
T ss_pred hcCCcceeEEEEEEEEEeCCEEEEECccccccCCEEEEC--CC--cEEEEEEEcCCeEEEEEecCcccccC-CCeeeecC
Confidence 455544 44789999999999999999889999999993 44 68999999999999999999999995 99999999
Q ss_pred CeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCC
Q 011320 91 EVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAG 170 (488)
Q Consensus 91 ~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G 170 (488)
++++||||++|||||+|++|+|||+++++.+..++++++.||+|++|.++++||+||||+||+|+|||||||+||||++|
T Consensus 93 ~~~~v~vg~~llGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~~g 172 (502)
T PRK09281 93 RILEVPVGEALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQ 172 (502)
T ss_pred CceEEecCHHhcCCEEccCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecCCC
Confidence 99999999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred CChhHH-HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHH
Q 011320 171 LPHNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249 (488)
Q Consensus 171 ~GKt~L-l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r 249 (488)
+|||+| ++||++|.+ +| ++|||++||||.+++.++.+++.+.++|+||++|++|+|+||.+|
T Consensus 173 ~GKt~lal~~i~~~~~-------~d----------v~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r 235 (502)
T PRK09281 173 TGKTAIAIDTIINQKG-------KD----------VICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQ 235 (502)
T ss_pred CCchHHHHHHHHHhcC-------CC----------eEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHH
Confidence 999999 899988864 33 468999999997777778888888899999999999999999999
Q ss_pred HhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--CCccee
Q 011320 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSIT 327 (488)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~~GSIT 327 (488)
+++||+|||+||||| |+|+|||+++||+||||+|+||||+++||||+++|||||+|+.||+|+||||++++ .+||||
T Consensus 236 ~~a~~~a~tiAEyfr-d~G~~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~~~~GSIT 314 (502)
T PRK09281 236 YLAPYAGCAMGEYFM-DNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSLT 314 (502)
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCCCCCccEE
Confidence 999999999999999 89999999999999999999999999999999999999999999999999999853 489999
Q ss_pred EEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHcc
Q 011320 328 QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG 407 (488)
Q Consensus 328 ~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~ 407 (488)
+||+|++|+||++|||||+++|||||||||||+||++||||||||+.|+||+|++++. ++|++++.+++..|+++
T Consensus 315 al~~V~~~~dD~s~pI~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y 389 (502)
T PRK09281 315 ALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAAQI-----KAMKKVAGTLRLDLAQY 389 (502)
T ss_pred EEEEEECCCCCCCCcchHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCCccCC-----HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998653 78999999999999999
Q ss_pred ccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHH----HHHhcchhhhcCCChhhHhh
Q 011320 408 KDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWT----LLRIFPRELLHRIPGKTLDQ 480 (488)
Q Consensus 408 ~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 480 (488)
++++++.++ | ..++++++.+++++++|+ .||+|+.+++.++++++..+|. +++.++.+++.++.+++++.
T Consensus 390 ~e~~~l~~~-g-~~l~~~~~~~l~~~~~i~-~fL~Q~~~~~~~~~~~~~~~~~~~~G~l~~l~~~~i~~~~~~~~~~ 463 (502)
T PRK09281 390 RELEAFAQF-G-SDLDEATRAQLERGQRLV-ELLKQPQYSPLPVEEQVVILYAGTNGYLDDVPVEKVRRFEAELLAY 463 (502)
T ss_pred HHHHHHHHH-h-cCCCHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHH
Confidence 999999875 6 568999999999999996 8999999999999999999999 78888888888888888754
No 7
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=8.6e-112 Score=895.10 Aligned_cols=425 Identities=24% Similarity=0.353 Sum_probs=395.6
Q ss_pred cCCccc-cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcC
Q 011320 12 EGTLEV-AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTG 90 (488)
Q Consensus 12 ~~~~~~-~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg 90 (488)
.|+... .+.+|+|++|.|+++++.|+..+++||+|+|. ++ ..|+|++++++.+.+++|+++.||+. |+.|.+||
T Consensus 18 ~~~~~~~~~~~G~V~~v~g~ii~v~gl~~~~~gEl~~i~--~~--~~g~Vi~l~~~~v~~~~l~~~~gi~~-G~~V~~tg 92 (497)
T TIGR03324 18 SFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFP--GG--LLGIAFNVDEDEVGVVLLGEYSHLQA-GDEVERTG 92 (497)
T ss_pred hcCCCcceeEEEEEEEEeceEEEEEccCCCCcCCEEEEC--CC--cEEEEEEEcCCeEEEEEecCCcCCcC-CCEEEECC
Confidence 344443 44789999999999999998899999999993 33 58999999999999999999999995 99999999
Q ss_pred CeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCC
Q 011320 91 EVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAG 170 (488)
Q Consensus 91 ~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G 170 (488)
++++||||++|||||+|++|+|||+++++....++|++++||+|++|.++++||+||||+||+|+|||||||+||||++|
T Consensus 93 ~~~~vpvg~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR~~Ifg~~g 172 (497)
T TIGR03324 93 RVMDVPVGDGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQ 172 (497)
T ss_pred CCCeEECCHhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCEEEeecCCC
Confidence 99999999999999999999999999988878889999999999999999999999999999999999999999999999
Q ss_pred CChhHH-HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHH
Q 011320 171 LPHNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249 (488)
Q Consensus 171 ~GKt~L-l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r 249 (488)
+|||+| ++||++|.+ +| ++|||++||||.+++.++.+++.+.++|+||++|++|+|+||.+|
T Consensus 173 ~GKT~Lal~~I~~q~~-------~d----------v~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 173 TGKTAIAIDTILNQKG-------RN----------VLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred CCHHHHHHHHHHHhcC-------CC----------cEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 999999 799999864 33 359999999997666677788888889999999999999999999
Q ss_pred HhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--CCccee
Q 011320 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSIT 327 (488)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~~GSIT 327 (488)
+++||+||||||||| |+|+|||++|||+||||+|+||||+++||||+++|||||+|+.||+|+||||++++ .+||||
T Consensus 236 ~~ap~~a~aiAEyfr-d~G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~~~~~GSIT 314 (497)
T TIGR03324 236 YIAPYAATSIGEHFM-EQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNEELGGGSLT 314 (497)
T ss_pred HHHHHHHHHHHHHHH-hCCCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccCCCCCccee
Confidence 999999999999999 89999999999999999999999999999999999999999999999999999754 489999
Q ss_pred EEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHcc
Q 011320 328 QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG 407 (488)
Q Consensus 328 ~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~ 407 (488)
+||+|++++||++|||||+++|||||||||||+||++||||||||+.|+||+|++++. ++|++++.+++..|+++
T Consensus 315 al~~V~~~~dD~s~pI~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y 389 (497)
T TIGR03324 315 ALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKAQL-----AAYRAVAGDLKLAYAQF 389 (497)
T ss_pred EEEEEEcCCCCCCCcchHhheeccceEEEEcHHHHhCCCCCcCCCccccccCCccccC-----HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997654 68999999999999999
Q ss_pred ccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcch
Q 011320 408 KDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPR 467 (488)
Q Consensus 408 ~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~ 467 (488)
++++++.++ |.+ ++++.+.+++++++++ +||+|+++++.++++++..++++.+.++.
T Consensus 390 ~e~e~~~~~-G~~-ld~~~~~~i~~~~~i~-~fL~Q~~~~~~~~~~~~~~l~~~~~g~~d 446 (497)
T TIGR03324 390 EELETFARF-GAR-LDENTRKTIEHGRRIR-ACLKQTQSSPLTVPQQIAILLALTNGLFD 446 (497)
T ss_pred HHHHHHHHh-hhh-cCHHHHHHHHhHHHHH-HHhCCCCCCCCCHHHHHHHHHHHhcCCCC
Confidence 888888775 654 8999999999999995 99999999999999999999998777654
No 8
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=2.1e-111 Score=887.82 Aligned_cols=430 Identities=27% Similarity=0.400 Sum_probs=396.0
Q ss_pred eeeEEEEEECCEEEEeccC--CCCCCcEEEEEeCCCceeEEEEEE-EECCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 011320 20 EYRTVTGVAGPLVILDKVK--GPKYYEIVNIRLGDGTMRRGQVLE-VDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (488)
Q Consensus 20 ~~G~V~~I~G~li~v~g~~--~~~igE~~~i~~~~g~~~~geVv~-~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vp 96 (488)
.+|+|++|.|++|+++|+. .+++||+|+|...++..+.|||++ |+++.+.++||++++||+. |++|.+||++++||
T Consensus 2 ~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~-G~~V~~tg~~~~v~ 80 (463)
T PRK09280 2 NTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVR-GMEVIDTGAPISVP 80 (463)
T ss_pred CccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCC-CCEEEeCCCceEEE
Confidence 4799999999999999873 359999999942323457899999 9999999999999999996 99999999999999
Q ss_pred cCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHH
Q 011320 97 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (488)
Q Consensus 97 vG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~L 176 (488)
||++|||||+|++|||||+.+++....++|++++||+|++|.++++||.||||+||+|+|||+|||+||||++|+|||+|
T Consensus 81 vg~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~L 160 (463)
T PRK09280 81 VGKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL 160 (463)
T ss_pred cChhhcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHH
Confidence 99999999999999999999888777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHH
Q 011320 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (488)
Q Consensus 177 l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a 256 (488)
++||+++.. +| + ..++||++||||.+++.++.+++.+.+.++||++|++|||+||.+|++++|+|
T Consensus 161 l~~i~~~~~-------~~------~--~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a 225 (463)
T PRK09280 161 IQELINNIA-------KE------H--GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTG 225 (463)
T ss_pred HHHHHHHHH-------hc------C--CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 999999875 23 1 23899999999965555556666666789999999999999999999999999
Q ss_pred HHHHHHhhHh-cCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeec
Q 011320 257 LTTAEYLAYE-CGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP 335 (488)
Q Consensus 257 ~tiAEyfr~d-~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~ 335 (488)
+|+||||| | ||+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+ .++||||+||+|++|
T Consensus 226 ~tiAEyfr-d~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~--~~~GSITai~tVl~~ 302 (463)
T PRK09280 226 LTMAEYFR-DVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITS--TKKGSITSVQAVYVP 302 (463)
T ss_pred HHHHHHHH-HhcCCceEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcC--CCCCceeEEEEEECc
Confidence 99999999 7 9999999999999999999999999999999999999999999999999998 458999999999999
Q ss_pred CCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHH
Q 011320 336 NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKA 415 (488)
Q Consensus 336 ~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~ 415 (488)
+||++|||+|++++||||||+|||+||++||||||||+.|+||+|++ ++++++|+++++++++.|+++++++++.+
T Consensus 303 gdD~~dPI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~----~~~~~~~~~~a~~~r~~la~y~e~e~li~ 378 (463)
T PRK09280 303 ADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDP----LIVGEEHYDVAREVQQILQRYKELQDIIA 378 (463)
T ss_pred CCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCccCCcccccccccc----ccCCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999954 34568999999999999999999999999
Q ss_pred HhCCcCCCHHHHHHHHHHhHHHHHHhccCC----------CCCCCHHHHHHHHHHHHH----hcchhhhcCC
Q 011320 416 VVGEEALSSEDLLYLEFLDKFERKFVAQGA----------YDSRNIFQSLDLAWTLLR----IFPRELLHRI 473 (488)
Q Consensus 416 ~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~----------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 473 (488)
+.|.+++++.++++++++++|+ .||+|++ .+..+++++++.+.++++ .++...++++
T Consensus 379 i~gy~~~sd~~d~ai~~~~~i~-~fL~Q~~~~~~~ft~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~ 449 (463)
T PRK09280 379 ILGMDELSEEDKLTVARARKIQ-RFLSQPFFVAEQFTGSPGKYVPLKDTIRGFKEILEGEYDHLPEQAFYMV 449 (463)
T ss_pred hhCCccCCHHHHHHHHhhHHHH-HhccCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHHhcc
Confidence 8888999999999999999996 9999999 899999999999999987 3456666554
No 9
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.7e-111 Score=902.27 Aligned_cols=417 Identities=28% Similarity=0.433 Sum_probs=381.3
Q ss_pred eeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecCcc
Q 011320 21 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLD 100 (488)
Q Consensus 21 ~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG~~ 100 (488)
.|+|++|+|++|+++|+..+++||+|+|. +..+.|||++++++.+++|+|++|+||++ |++|..||++++|+||++
T Consensus 1 ~G~I~~V~Gpvv~a~g~~~~~~gE~v~v~---~~~l~gEVi~~~~d~a~iqvye~t~Gl~~-G~~V~~tg~plsV~lGpg 76 (578)
T TIGR01043 1 KGRIIRVSGPLVVADGMKGAQMYEVVKVG---EEGLIGEIIRIEGDKAFIQVYEETSGIKP-GEPVVGTGAPLSVELGPG 76 (578)
T ss_pred CCEEEEEECCEEEEecCCCCCcCCEEEEC---CCcEEEEEEEEcCCeEEEEECCCCCCCCC-CCEEEECCCccEEEcCHH
Confidence 38999999999999999889999999994 23479999999999999999999999997 999999999999999999
Q ss_pred ccceEecCCCcccCCCCC----C----------CCC--------------------------------------------
Q 011320 101 MLGRIFNGSGKPIDNGPP----I----------LPE-------------------------------------------- 122 (488)
Q Consensus 101 lLGRVlD~lG~PlDg~~~----~----------~~~-------------------------------------------- 122 (488)
|||||+|++|||||+.++ . ...
T Consensus 77 lLGrV~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v 156 (578)
T TIGR01043 77 LLGSIYDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEI 156 (578)
T ss_pred HhcceeccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcceE
Confidence 999999999999998632 1 111
Q ss_pred -----------------------------ceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCCh
Q 011320 123 -----------------------------AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (488)
Q Consensus 123 -----------------------------~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GK 173 (488)
++||+.. |+++++|.++++||.||||+||+|+|||||||++|||++|+||
T Consensus 157 ~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GK 235 (578)
T TIGR01043 157 VEIAEEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGK 235 (578)
T ss_pred EEeccCCCceeeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCH
Confidence 1457766 7889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhh-------ccCCCcceEEEEEeCCCCC
Q 011320 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDF-------EENGSMERVTLFLNLANDP 245 (488)
Q Consensus 174 t~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l-------~~~~~~~~tvvv~~t~~~~ 245 (488)
|+|++||++|+. +| +|||++|||| +|+.+|+ +++ .+.++|+|||+|+||||+|
T Consensus 236 T~l~~~lak~~~-------ad-----------ivVyvg~GERG~E~~e~l-e~f~~l~dp~~g~~~m~RTvlVanTSn~p 296 (578)
T TIGR01043 236 TVTQHQLAKWSD-------AD-----------IVVYIGCGERGNEMTDVL-EEFPELKDPKTGKPLMERTVLIANTSNMP 296 (578)
T ss_pred HHHHHHHHhcCC-------CC-----------EEEEEEeccChHHHHHHH-HHhHhhcccccccccccceEEEEECCCCC
Confidence 999999999864 55 9999999999 5555554 445 3355799999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccC-----
Q 011320 246 TIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE----- 320 (488)
Q Consensus 246 ~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~----- 320 (488)
+++|++++|+|+||||||| |||+|||+|+||+||||+|+||||+++||||+++|||||||++|++||||||+++
T Consensus 297 ~~aR~~s~ytg~TiAEYfR-D~G~~Vllm~DS~sR~AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~ 375 (578)
T TIGR01043 297 VAAREASIYTGITIAEYFR-DMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGE 375 (578)
T ss_pred HHHHHHHHHHHHHHHHHHH-HCCCCEEEEecChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccccCCC
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999984
Q ss_pred CCCcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCccccccccccccc---ccccHHHHH
Q 011320 321 GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM---TRRDHSDVS 397 (488)
Q Consensus 321 ~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~---~~~~h~~~~ 397 (488)
+++||||+|++|++||||++|||+++|++|+||||+|||+||++||||||||+.|+||+|+.+ ++|+ ++++|.+++
T Consensus 376 ~r~GSIT~i~aVs~~ggD~sdPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~-~~~~~~~v~~~~~~~~ 454 (578)
T TIGR01043 376 ERVGSVTVIGAVSPPGGDFSEPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVDLV-QDWWHENVDPDWREMR 454 (578)
T ss_pred CCCccEeEEEEEECCCCCCCccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcccchhhhcccc-ccccccccCHHHHHHH
Confidence 247999999999999999999999999999999999999999999999999999999999987 3455 678999999
Q ss_pred HHHHHHHHccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCC----CHHHHHHHHHHHHH
Q 011320 398 NQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSR----NIFQSLDLAWTLLR 463 (488)
Q Consensus 398 ~~l~~~y~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~----~~~~~~~~~~~~~~ 463 (488)
++++..|+++++++++.+++|.|++++.|+..+++++.+++.||+|+.|+++ ++++++..+..++.
T Consensus 455 ~~~~~lL~~~~el~~iv~lvG~d~L~~~d~~il~~a~~i~e~FLqQ~~~~~~d~~~~~~k~~~~L~~i~~ 524 (578)
T TIGR01043 455 DEAMDLLQKESELQEIVQLVGPDALPERQKLILEVARMIREAFLQQNAFDPVDTYCPPQKQYRILRAIMN 524 (578)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhHHHHHhhCCCCCCCCccCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998899999998877 77777777766654
No 10
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=7.4e-111 Score=886.35 Aligned_cols=421 Identities=24% Similarity=0.371 Sum_probs=391.6
Q ss_pred eeeEEEEEECCEEEEeccCC--CCCCcEEEEEeCCCceeEEEEEEE-ECCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 011320 20 EYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEV-DGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (488)
Q Consensus 20 ~~G~V~~I~G~li~v~g~~~--~~igE~~~i~~~~g~~~~geVv~~-~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vp 96 (488)
.+|+|++|.|++|+++|+.+ +++||+|+|...++ .+.+||+++ +++.+.+++|+++.||+. |++|.+||++++||
T Consensus 2 ~~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~-~~~~eVv~~l~~~~v~l~~~~~~~gl~~-G~~V~~tg~~~~v~ 79 (461)
T PRK12597 2 MIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGG-PTLLEVKQHLDETTVRAIALGSTSGLAR-GDEVRNTGGPIEVP 79 (461)
T ss_pred CccEEEEEECcEEEEEECCCCCcCccCEEEEecCCC-cEEEEEEEEcCCCeEEEEEecCccCCCC-CCEEEeCCCceEEE
Confidence 47999999999999999865 89999999953233 368999999 999999999999999995 99999999999999
Q ss_pred cCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHH
Q 011320 97 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (488)
Q Consensus 97 vG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~L 176 (488)
||++|||||+|++|+|||+.+++....++|+++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|
T Consensus 80 vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~L 159 (461)
T PRK12597 80 VGEAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVL 159 (461)
T ss_pred cChhhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHH
Confidence 99999999999999999999888777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHH
Q 011320 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (488)
Q Consensus 177 l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a 256 (488)
++||+++..+.+ +| ++||++||||.+++.++++++.+++.++||++|++|+|+||.+|++++|+|
T Consensus 160 l~~~~~~~~~~~----~d-----------v~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a 224 (461)
T PRK12597 160 MMELIFNISKQH----SG-----------SSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTG 224 (461)
T ss_pred HHHHHHHHHhhC----CC-----------EEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHH
Confidence 999999875322 34 999999999966666666777777789999999999999999999999999
Q ss_pred HHHHHHhhHhc-CCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeec
Q 011320 257 LTTAEYLAYEC-GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP 335 (488)
Q Consensus 257 ~tiAEyfr~d~-G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~ 335 (488)
+|+||||| |+ |+||||++||+||||+|+||||+++||||+++|||||+|++|++|+||||+ .++||||+||||++|
T Consensus 225 ~tiAEyfr-d~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~--~~~GSIT~i~tVl~~ 301 (461)
T PRK12597 225 LTIAEYLR-DEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIAS--TKNGSITSIQAVYVP 301 (461)
T ss_pred HHHHHHHH-HhcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcC--CCCccccEEEEEEec
Confidence 99999999 66 999999999999999999999999999999999999999999999999997 458999999999999
Q ss_pred CCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHH
Q 011320 336 NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKA 415 (488)
Q Consensus 336 ~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~ 415 (488)
+||++|||+|++++||||||+|||+||++||||||||+.|+||+|+. .+.+++|+++++++++.|+++++++++.+
T Consensus 302 ~dD~~dPI~d~~~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~----~i~~~~h~~~a~~~r~~la~y~e~e~li~ 377 (461)
T PRK12597 302 ADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDP----LVVGERHYDAAIEVKRILQRYKELEDVIA 377 (461)
T ss_pred CCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCcccccccccc----ccCCHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999954 24457999999999999999999999999
Q ss_pred HhCCcCCCHHHHHHHHHHhHHHHHHhccCC----------CCCCCHHHHHHHHHHHHHhc
Q 011320 416 VVGEEALSSEDLLYLEFLDKFERKFVAQGA----------YDSRNIFQSLDLAWTLLRIF 465 (488)
Q Consensus 416 ~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~----------~~~~~~~~~~~~~~~~~~~~ 465 (488)
+.|.++++++++.+++++++|+ +||+|++ .+..+++++++.++++++.-
T Consensus 378 i~gy~~l~~~~d~~i~~~~~i~-~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~ 436 (461)
T PRK12597 378 ILGIDELSAEDKIIVKRARQLQ-RFLTQPFFVTEAFTGEPGVSVPLEETLDSCERILNGE 436 (461)
T ss_pred HcCCccCCHHHHHHHHhHHHHH-HHhCCCcchhhcccCCCCcccCHHHHHHHHHHHhCCC
Confidence 8887779999999999999997 8999999 67899999999999998743
No 11
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=1.4e-110 Score=879.05 Aligned_cols=429 Identities=25% Similarity=0.375 Sum_probs=394.7
Q ss_pred eeEEEEEECCEEEEeccCCCCCCcEE---EEEeCCCceeEEEEEE-EECCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 011320 21 YRTVTGVAGPLVILDKVKGPKYYEIV---NIRLGDGTMRRGQVLE-VDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (488)
Q Consensus 21 ~G~V~~I~G~li~v~g~~~~~igE~~---~i~~~~g~~~~geVv~-~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vp 96 (488)
+|+|++|.|+++++.|+ .+.+|++| .|...++..+.+||++ |+++.+.++||+++.||+. |+.|.+|+++++||
T Consensus 2 ~G~v~~v~g~~ie~~~~-~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~-G~~V~~t~~~~~i~ 79 (461)
T TIGR01039 2 KGKVVQVIGPVVDVEFE-QGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVR-GLEVIDTGAPISVP 79 (461)
T ss_pred ccEEEEEEeeEEEEEEC-CCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCC-CCEEEeCCCceEEE
Confidence 69999999999999987 46899999 8843234247899999 9999999999999999995 99999999999999
Q ss_pred cCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHH
Q 011320 97 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (488)
Q Consensus 97 vG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~L 176 (488)
||++|||||+|++|+|||+.+++....++|+++.||+|++|.++++||.||||+||+|+|||||||+||||++|+|||+|
T Consensus 80 vg~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L 159 (461)
T TIGR01039 80 VGKETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL 159 (461)
T ss_pred cChhhcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHH
Confidence 99999999999999999999887777778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHH
Q 011320 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (488)
Q Consensus 177 l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a 256 (488)
++|++++.. +| ...++||++||||.+++.++++++.+.++++||++|+||||+||.+|++++|+|
T Consensus 160 ~~~~~~~~~-------~~--------~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a 224 (461)
T TIGR01039 160 IQELINNIA-------KE--------HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTG 224 (461)
T ss_pred HHHHHHHHH-------hc--------CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 999999875 23 123899999999955555556667777789999999999999999999999999
Q ss_pred HHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecC
Q 011320 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPN 336 (488)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~ 336 (488)
+|+|||||+++|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+ .++||||+||+|++|+
T Consensus 225 ~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~--~~~GSITai~tVl~~g 302 (461)
T TIGR01039 225 LTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITS--TKTGSITSVQAVYVPA 302 (461)
T ss_pred HHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCC--CCCCceeEEEEEEccC
Confidence 99999999438999999999999999999999999999999999999999999999999997 4589999999999999
Q ss_pred CCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHH
Q 011320 337 DDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 416 (488)
Q Consensus 337 dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~ 416 (488)
||++|||+|++++||||||+|||+||++||||||||+.|+||+|+. .+++++|+++++++++.|+++++++++.++
T Consensus 303 dD~~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~----~~~~~~h~~~a~~~r~~la~y~e~~~li~i 378 (461)
T TIGR01039 303 DDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDP----SVVGEEHYDVARGVQQILQRYKELQDIIAI 378 (461)
T ss_pred CCCCCccHHHHHHhcceEEEECHHHHhCCCCCCcCCccccccccCC----ccCCHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999953 345689999999999999999999999998
Q ss_pred hCCcCCCHHHHHHHHHHhHHHHHHhccCC----------CCCCCHHHHHHHHHHHHHh----cchhhhcCC
Q 011320 417 VGEEALSSEDLLYLEFLDKFERKFVAQGA----------YDSRNIFQSLDLAWTLLRI----FPRELLHRI 473 (488)
Q Consensus 417 ~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~----------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 473 (488)
.|.+++++.++++++++++|+ +||+|++ .+..+++++++.+.++++. ++...++++
T Consensus 379 ~g~~~lsd~~~~~l~~~~~i~-~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~l~~i~~g~~~~~~~~~~~~~ 448 (461)
T TIGR01039 379 LGMDELSEEDKLTVERARRIQ-RFLSQPFFVAEVFTGQPGKYVPLKDTIRGFKEILEGKYDHLPEQAFYMV 448 (461)
T ss_pred hCCccCCHHHHHHHHhHHHHH-HHhCCCCchhccccCCCCcccCHHHHHHHHHHHhCCCccCCCHHHHhcc
Confidence 898999999999999999996 9999999 8999999999999999873 456666655
No 12
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.1e-110 Score=897.21 Aligned_cols=423 Identities=29% Similarity=0.462 Sum_probs=388.3
Q ss_pred ceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecC
Q 011320 19 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVS 98 (488)
Q Consensus 19 ~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG 98 (488)
..+|+|++|+|++|+++|+..+++||+|+|. +..+.|||++++++.+.+|+|++|+||++ |++|.+||++++|++|
T Consensus 2 ~~~G~I~~V~Gpvv~~~~~~~~~~~E~v~v~---~~~l~gEVi~~~~d~a~iqv~e~T~Gl~~-G~~V~~tg~plsv~lG 77 (586)
T PRK04192 2 MTKGKIVRVSGPLVVAEGMGGARMYEVVRVG---EEGLIGEIIRIEGDKATIQVYEETSGIKP-GEPVEFTGEPLSVELG 77 (586)
T ss_pred CceeEEEEEECcEEEEEeCCCCCccCEEEEC---CCcEEEEEEEEeCCceEEEEecCCcCCCC-CCEEEeCCCccEEEcC
Confidence 4689999999999999999889999999993 34579999999999999999999999997 9999999999999999
Q ss_pred ccccceEecCCCcccCCCCCC--------------CC-------------------------------------------
Q 011320 99 LDMLGRIFNGSGKPIDNGPPI--------------LP------------------------------------------- 121 (488)
Q Consensus 99 ~~lLGRVlD~lG~PlDg~~~~--------------~~------------------------------------------- 121 (488)
|+|||||||++|||||+.+.. ..
T Consensus 78 pglLGrv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g 157 (586)
T PRK04192 78 PGLLGSIFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSG 157 (586)
T ss_pred HHhcCCeecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCce
Confidence 999999999999999986521 10
Q ss_pred --------------------------------CceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCC
Q 011320 122 --------------------------------EAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (488)
Q Consensus 122 --------------------------------~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~ 169 (488)
.++||++.++|. .+|.++++||.||||+||+|+||+||||++|||++
T Consensus 158 ~~~~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~ 236 (586)
T PRK04192 158 TVKEIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPF 236 (586)
T ss_pred EEEEEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCC
Confidence 023577777666 89999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhcc-------CCCcceEEEEEeCC
Q 011320 170 GLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEE-------NGSMERVTLFLNLA 242 (488)
Q Consensus 170 G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~-------~~~~~~tvvv~~t~ 242 (488)
|+|||+|++||++|+. +| ++||++||||.+++.++.++|.+ .++|+||++|+|||
T Consensus 237 G~GKTvl~~~iak~a~-------ad-----------ivVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTS 298 (586)
T PRK04192 237 GSGKTVTQHQLAKWAD-------AD-----------IVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTS 298 (586)
T ss_pred CCCHHHHHHHHHhcCC-------CC-----------EEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECC
Confidence 9999999999999975 55 99999999995555555555432 45799999999999
Q ss_pred CCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccC--
Q 011320 243 NDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE-- 320 (488)
Q Consensus 243 ~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~-- 320 (488)
|+|+++|++++|+|+|+||||| |||+|||+|+||+||||+|+||||+++||||+++||||||||+||+||||||+++
T Consensus 299 n~Pv~aR~~s~ytgiTiAEYfR-d~G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~ 377 (586)
T PRK04192 299 NMPVAAREASIYTGITIAEYYR-DMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTL 377 (586)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcccccC
Confidence 9999999999999999999999 9999999999999999999999999999999999999999999999999999985
Q ss_pred -CCCcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccc--cccccHHHHH
Q 011320 321 -GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG--MTRRDHSDVS 397 (488)
Q Consensus 321 -~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~--~~~~~h~~~~ 397 (488)
+.+||||+|++|++||||++|||+++|++|+||||+|||+||++||||||||+.|+||+++.+..|+ .++++|.+++
T Consensus 378 ~~~~GSIT~i~aVs~pggD~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~ 457 (586)
T PRK04192 378 GGEEGSVTIIGAVSPPGGDFSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELR 457 (586)
T ss_pred CCCCcceEEEEEEECCCCCCCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCccchhhhhhcccchhhcccCHHHHHHH
Confidence 2489999999999999999999999999999999999999999999999999999999999875422 3458999999
Q ss_pred HHHHHHHHccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhc
Q 011320 398 NQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIF 465 (488)
Q Consensus 398 ~~l~~~y~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~ 465 (488)
+++++.|+++++++++.+++|.|.||++|+++++++++|++.||+|++|+++|.++++++.|.+++.+
T Consensus 458 ~~~~~~L~~~~el~eiv~lvG~d~Ls~~d~~~l~~a~~i~~~fL~Q~~f~~~d~~~~l~k~~~~l~~i 525 (586)
T PRK04192 458 DEAMDLLQREAELQEIVRLVGPDALPEEDRLILEVARLIREDFLQQNAFDPVDTYCPPEKQYEMLKLI 525 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHhhcCCCCCCCccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999888888765
No 13
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=3.4e-110 Score=876.93 Aligned_cols=419 Identities=24% Similarity=0.344 Sum_probs=390.7
Q ss_pred eEEEEEECCEEEEecc-CCCCCCcEEEEEeCCCceeEEEEEE-EECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecCc
Q 011320 22 RTVTGVAGPLVILDKV-KGPKYYEIVNIRLGDGTMRRGQVLE-VDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSL 99 (488)
Q Consensus 22 G~V~~I~G~li~v~g~-~~~~igE~~~i~~~~g~~~~geVv~-~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG~ 99 (488)
|+|++|.|+||+++.. ..+.+++++.+. ++..+.+||++ |+++.+.+++|++++||+. |++|.+||++++||||+
T Consensus 1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~--~~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~-G~~V~~tg~~~~VpVg~ 77 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAG--REGEVVVEVLSQLDAHHVRGIALTPTQGLAR-GMPVRDSGGPLKAPVGK 77 (449)
T ss_pred CeEEEEEcCEEEEEeCCCCcchhheEEec--CCCcEEEeeeeEecCCeEEEEEccCcccCCC-CCEEEecCCceEEEcCh
Confidence 8999999999999863 468899999984 34567899998 9999999999999999995 99999999999999999
Q ss_pred cccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHHHH
Q 011320 100 DMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ 179 (488)
Q Consensus 100 ~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~ 179 (488)
+|||||+|++|+|||+.+++....+++++++||+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.|
T Consensus 78 ~lLGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~ 157 (449)
T TIGR03305 78 PTLSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTE 157 (449)
T ss_pred hhcCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHH
Confidence 99999999999999999888777788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHH
Q 011320 180 ICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT 259 (488)
Q Consensus 180 i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~ti 259 (488)
|++|.... ..+++||++||||.+++.++++++.+.++++||++|++|||+||++|++++|+|+|+
T Consensus 158 ~~~~~~~~---------------~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~ti 222 (449)
T TIGR03305 158 MIHNMVGQ---------------HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTM 222 (449)
T ss_pred HHHHHHhc---------------CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 99986311 123999999999977777777888888899999999999999999999999999999
Q ss_pred HHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCCC
Q 011320 260 AEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDI 339 (488)
Q Consensus 260 AEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD~ 339 (488)
|||||+++|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+. ++||||+||+|++|+||+
T Consensus 223 AEyfrd~~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~--~~GSIT~i~~V~~~~dD~ 300 (449)
T TIGR03305 223 AEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATT--SDGAITSIQAVYVPADDF 300 (449)
T ss_pred HHHHHHhcCCceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCC--CCcCeeEEEEEEccCCCC
Confidence 999994499999999999999999999999999999999999999999999999999983 589999999999999999
Q ss_pred CCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHhCC
Q 011320 340 THPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVGE 419 (488)
Q Consensus 340 ~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~~G~ 419 (488)
+|||+|+++|||||||+|||+||++||||||||+.|+||+|++. +++++|+++++++++.|+++++++++.++.|.
T Consensus 301 ~dPi~d~~~silDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~----i~~~~h~~~a~~~~~~l~~y~e~~~li~~~g~ 376 (449)
T TIGR03305 301 TDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPG----IVGERHYDLAREVRQTLAQYEELKDIIAMLGL 376 (449)
T ss_pred CCchhHhhhhhcceEEEEcHHHHhCCCCCccCCCcchhhcCCcc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999642 34579999999999999999999999998898
Q ss_pred cCCCHHHHHHHHHHhHHHHHHhccCCCCC----------CCHHHHHHHHHHHHHhc
Q 011320 420 EALSSEDLLYLEFLDKFERKFVAQGAYDS----------RNIFQSLDLAWTLLRIF 465 (488)
Q Consensus 420 d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~----------~~~~~~~~~~~~~~~~~ 465 (488)
+++++.++++++++++|+ +||+|++++. .++++|++..|++++.-
T Consensus 377 ~~l~~~~~~~i~~~~~i~-~fL~Q~~~~~e~~t~~~g~~v~l~~tl~~~~~il~g~ 431 (449)
T TIGR03305 377 EQLSREDRRVVNRARRLE-RFLTQPFFTTEQFTGMKGKTVSLEDALDGCERILNDE 431 (449)
T ss_pred ccCCHHHHHHHHHHHHHH-HHhCCCCcccccccCCCCceeEHHHHHHHHHHHhcCC
Confidence 999999999999999996 8999999998 79999999999998843
No 14
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.2e-109 Score=870.67 Aligned_cols=415 Identities=29% Similarity=0.467 Sum_probs=381.4
Q ss_pred ccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCc-eeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCee
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGT-MRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~-~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~ 93 (488)
.++.+.+|+|++|.|+++++.+ ..+++||+|+|+..++. .+.|||++|+++++++|||++++||+. |++|.+||+++
T Consensus 18 ~~~~~~~G~V~~v~g~~v~~~~-~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~V~~tg~~~ 95 (439)
T PRK06936 18 SRLIQIRGRVTQVTGTILKAVV-PGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLGEMYGISS-NTEVSPTGTMH 95 (439)
T ss_pred CCccceeeEEEEEECcEEEEEe-CCCCCCCEEEEecCCCCcceEEEEEEEECCeEEEEecCCCCCCCC-CCEEEeCCCce
Confidence 4567889999999999999975 57899999999744333 478999999999999999999999995 99999999999
Q ss_pred eEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCCh
Q 011320 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (488)
Q Consensus 94 ~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GK 173 (488)
+||||++|||||+|++|||||+.+++....++|+++.||+|++|.++++||+|||++||.|+|+++|||++|||++|+||
T Consensus 96 ~v~vg~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GK 175 (439)
T PRK06936 96 QVGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGK 175 (439)
T ss_pred EEEeCccccCCEECCCCCccCCCCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCCh
Confidence 99999999999999999999999888777888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhH
Q 011320 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERIIT 252 (488)
Q Consensus 174 t~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a 252 (488)
|||+++|+++.. +| +|||++|||| +|+.+|+++.+++++ ++||++|++|||+||.+|+++
T Consensus 176 StLl~~Ia~~~~-------~d-----------v~V~~liGERgrEv~ef~~~~l~~~~-l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 176 STLLASLIRSAE-------VD-----------VTVLALIGERGREVREFIESDLGEEG-LRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred HHHHHHHhcCCC-------CC-----------EEEEEEEccCcHHHHHHHHHHhcccc-cceeEEEEECCCCCHHHHHHH
Confidence 999999998864 34 8999999999 777777778888876 999999999999999999999
Q ss_pred HHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEE
Q 011320 253 PRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPIL 332 (488)
Q Consensus 253 ~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v 332 (488)
+|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+ .++||||+||||
T Consensus 237 ~~~a~tiAEyfr-d~G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~--~~~GSIT~i~tV 313 (439)
T PRK06936 237 GFVATSIAEYFR-DQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQ--SDKGSITALYTV 313 (439)
T ss_pred HHHHHHHHHHHH-HcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhcc--CCCcceeeeEEE
Confidence 999999999999 89999999999999999999999999999999999999999999999999997 358999999999
Q ss_pred eecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHH
Q 011320 333 TMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQA 412 (488)
Q Consensus 333 ~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~ 412 (488)
++|+||++|||+|+++||+||||+|||+||++||||||||+.|+||+|+.++ +++|+++++++++.|++++++++
T Consensus 314 l~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~-----~~~~~~~a~~~r~~la~y~e~e~ 388 (439)
T PRK06936 314 LVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIV-----SKEHKTWAGRLRELLAKYEEVEL 388 (439)
T ss_pred EccCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCCcccccccchhhC-----CHHHHHHHHHHHHHHHcchHHHH
Confidence 9999999999999999999999999999999999999999999999999755 47999999887777777766666
Q ss_pred HHHH---h-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q 011320 413 MKAV---V-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLL 462 (488)
Q Consensus 413 ~~~~---~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~ 462 (488)
+.++ . |. +++.++++.+.++++ +||+|+++++.++++++..|.+++
T Consensus 389 li~iG~y~~g~---d~~~d~ai~~~~~i~-~fL~Q~~~~~~~~~~~~~~l~~~~ 438 (439)
T PRK06936 389 LLQIGEYQKGQ---DKEADQAIERIGAIR-GFLRQGTHELSHFNETLNLLETLT 438 (439)
T ss_pred HHHhcCccCCC---CHHHHHHHHhHHHHH-HHcCCCCCCCCCHHHHHHHHHHHh
Confidence 6654 2 44 445556888888985 999999999999999999998875
No 15
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=9.4e-110 Score=882.74 Aligned_cols=427 Identities=25% Similarity=0.364 Sum_probs=396.2
Q ss_pred ccCCccc-cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEc
Q 011320 11 EEGTLEV-AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFT 89 (488)
Q Consensus 11 ~~~~~~~-~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~t 89 (488)
+.|+... .+.+|+|++|.|+++++.|+..+++||+|+| .+| ..|+|++|+++.+.+++|++++||+. |+.|.+|
T Consensus 17 ~~~~~~~~~~~~G~V~~v~g~i~~v~gl~~~~~ge~~~i--~~~--~~g~V~~l~~~~v~~~~l~~~~gi~~-G~~V~~t 91 (502)
T PRK13343 17 ARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRF--EGG--SRGFAFNLEEELVGAVLLDDTADILA-GTEVRRT 91 (502)
T ss_pred hcCCCcceeEEeeEEEEEeCCEEEEeCCCCCCCCCEEEE--CCC--cEEEEEEecCCeEEEEEeeCCCCCCC-CCEeEec
Confidence 3455443 3478999999999999999888999999999 344 58999999999999999999999995 9999999
Q ss_pred CCeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCC
Q 011320 90 GEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (488)
Q Consensus 90 g~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~ 169 (488)
|++++||||++|||||+|++|+|||+++++....++|+++.+|+|++|.++++||+||||+||+|+|||||||+||||++
T Consensus 92 g~~~~vpvg~~llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g~~ 171 (502)
T PRK13343 92 GRVLEVPVGDGLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDR 171 (502)
T ss_pred CCcceeecCHHhcCCEECCCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeCCC
Confidence 99999999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred CCChhHH-HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHH
Q 011320 170 GLPHNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIE 248 (488)
Q Consensus 170 G~GKt~L-l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~ 248 (488)
|+|||+| ++||++|.+ +| ++|||++||||.+++.++.+++.+.++|+||++|++|+|+||++
T Consensus 172 g~GKt~Lal~~i~~~~~-------~d----------v~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~ 234 (502)
T PRK13343 172 QTGKTAIAIDAIINQKD-------SD----------VICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGL 234 (502)
T ss_pred CCCccHHHHHHHHhhcC-------CC----------EEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHH
Confidence 9999999 899998754 33 46899999999777777778888889999999999999999999
Q ss_pred HHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--CCcce
Q 011320 249 RIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSI 326 (488)
Q Consensus 249 r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~~GSI 326 (488)
|+++||+|||+||||| |+|+|||+++||+||||+|+||||+++||||+++||||++|+.||+|+||||+++. .+|||
T Consensus 235 r~~ap~~a~aiAEyfr-d~G~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~~~~gGSI 313 (502)
T PRK13343 235 QYLAPFAGCAIAEYFR-DQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSPELGGGSL 313 (502)
T ss_pred HHHHHHHHHHHHHHHH-hCCCCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCCCCCCcce
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999999852 48999
Q ss_pred eEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHc
Q 011320 327 TQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAI 406 (488)
Q Consensus 327 T~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~ 406 (488)
|+||+|++++||++|||||+++|||||||||||+||++||||||||+.|+||+|++++. ++|++++.+++..|++
T Consensus 314 Tal~~V~~~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~ 388 (502)
T PRK13343 314 TALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKAQH-----PAIRKESGRLRLDYAQ 388 (502)
T ss_pred EEEEEEEcCCCCCCCcchhhhhcccceEEEECHHHHhCCCCCccCCccchhccCccccC-----HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998654 7899999999888888
Q ss_pred cccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchh
Q 011320 407 GKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRE 468 (488)
Q Consensus 407 ~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (488)
+++++++.++ |.+ ++++.+.++++.++++ +||+|+++++.++++++..++++.+.++.+
T Consensus 389 y~e~e~~~~~-G~~-ld~~~~~~i~~~~~i~-~~L~Q~~~~~~~~~~~~~~l~~~~~g~~~~ 447 (502)
T PRK13343 389 FLELEAFTRF-GGL-LDAGTQKQITRGRRLR-ELLKQPRFSPLSVEEQIALLYALNEGLLDA 447 (502)
T ss_pred HHHHHHHHHH-hhh-cCHHHHHHHHHHHHHH-HHhcCCCCCCCCHHHHHHHHHHHhcCCccC
Confidence 8888888764 554 8999999999999996 899999999999999999999988777653
No 16
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=9.9e-110 Score=871.92 Aligned_cols=420 Identities=23% Similarity=0.377 Sum_probs=386.7
Q ss_pred ccccceeeEEEEEECCEEEEeccC-CCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCee
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVK-GPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~-~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~ 93 (488)
.++.+.+|+|++|.|++|+++|+. .+++||+|+|...++..+.|||++|++++++++||+++.|++. |++|.+||+++
T Consensus 12 ~~~~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~V~~tg~~~ 90 (442)
T PRK08927 12 IDTLVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGDRALLMPFGPLEGVRR-GCRAVIANAAA 90 (442)
T ss_pred CCcceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCccCCCC-CCEEEeCCCcc
Confidence 467889999999999999999984 6799999999654554579999999999999999999999995 99999999999
Q ss_pred eEecCccccceEecCCCcccCCCCCCCCC-ceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCC
Q 011320 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPE-AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (488)
Q Consensus 94 ~VpvG~~lLGRVlD~lG~PlDg~~~~~~~-~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~G 172 (488)
+||||++|||||+|++|+|||+.+++... .++++++.||+|++|.++++||+||||+||+|+|+++|||++|||++|+|
T Consensus 91 ~v~vg~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~G 170 (442)
T PRK08927 91 AVRPSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVG 170 (442)
T ss_pred EEECChhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCC
Confidence 99999999999999999999999887664 57899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHh
Q 011320 173 HNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (488)
Q Consensus 173 Kt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~ 251 (488)
||+|+++|+++.. +| ++||++|||| +|+.+|+++.+++++ ++||++|++|||+||.+|++
T Consensus 171 KTtLL~~I~~~~~-------~d-----------~~v~~~iGER~rEv~ef~~~~l~~~~-l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 171 KSVLLSMLARNAD-------AD-----------VSVIGLIGERGREVQEFLQDDLGPEG-LARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred HHHHHHHHHhccC-------CC-----------EEEEEEEecCcHHHHHHHHHHhhccC-ceeEEEEEECCCCCHHHHHH
Confidence 9999999998764 33 7889999999 666677777888876 99999999999999999999
Q ss_pred HHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeE
Q 011320 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPI 331 (488)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~ 331 (488)
++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||+...++||||+||+
T Consensus 232 a~~~a~tiAEyfr-d~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~~~~GSIT~i~t 310 (442)
T PRK08927 232 AAYLTLAIAEYFR-DQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGPIGEGTITGLFT 310 (442)
T ss_pred HHHHHHHHHHHHH-HCCCcEEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCCCCCeeeeeeee
Confidence 9999999999999 899999999999999999999999999999999999999999999999999986545899999999
Q ss_pred EeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHH---HHHHHHHHccc
Q 011320 332 LTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVS---NQLYANYAIGK 408 (488)
Q Consensus 332 v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~---~~l~~~y~~~~ 408 (488)
|++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+++ ++|++.+ +++++.|++.+
T Consensus 311 Vlv~gdD~~dpi~d~~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e~e 385 (442)
T PRK08927 311 VLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCND-----PEENPLVRRARQLMATYADME 385 (442)
T ss_pred eEccCCCCCCchhhhhhccccEEEEEcHHHHhCCCCCccCCcccccccccccCC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998665 5777777 46788888888
Q ss_pred cHHHHHHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHh
Q 011320 409 DVQAMKAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRI 464 (488)
Q Consensus 409 ~l~~~~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~ 464 (488)
+++++++|. |.|+++| .++++.++++ +||+|+.+++.+++++++.+|++++.
T Consensus 386 dli~lg~y~~g~d~~~d---~ai~~~~~i~-~fL~Q~~~e~~~~~~~~~~l~~l~~~ 438 (442)
T PRK08927 386 ELIRLGAYRAGSDPEVD---EAIRLNPALE-AFLRQGKDEATSLAEGYARLAQILGG 438 (442)
T ss_pred HHHHhhCCcCCCCHHHH---HHHHccHHHH-HhcCCCCCCCCCHHHHHHHHHHHhcc
Confidence 888888884 7665544 4599999996 99999999999999999999999864
No 17
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3e-109 Score=865.56 Aligned_cols=420 Identities=25% Similarity=0.382 Sum_probs=386.2
Q ss_pred CCccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCe
Q 011320 13 GTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEV 92 (488)
Q Consensus 13 ~~~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~ 92 (488)
+...+.+.+|+|++|.|++|+++|+. +++||+|+|+..++ .+.|||++|+++.+++|||++++||+. |++|.+||++
T Consensus 18 ~~~~~~~~~G~v~~v~g~~i~~~g~~-~~ige~~~i~~~~~-~~~~EVv~~~~~~~~l~~~~~~~gi~~-g~~V~~tg~~ 94 (444)
T PRK08972 18 VPPFRAVASGKLVRVVGLTLEATGCR-APVGSLCSIETMAG-ELEAEVVGFDGDLLYLMPIEELRGVLP-GARVTPLGEQ 94 (444)
T ss_pred cCCCCcceeeEEEEEEcCEEEEeeCC-CCCCCEEEEecCCC-cEEEEEEEecCCEEEEEECCCcCCCCC-CCEEEECCCc
Confidence 34456778999999999999999975 89999999953233 479999999999999999999999996 9999999999
Q ss_pred eeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCC
Q 011320 93 LKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (488)
Q Consensus 93 ~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~G 172 (488)
++||||++|||||+|++|+|||+.+++....+++++++||+|++|.++++||+|||++||.++|+++|||++|||++|+|
T Consensus 95 ~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~G 174 (444)
T PRK08972 95 SGLPVGMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVG 174 (444)
T ss_pred cEEEcChhhcCCeECCCCCCcCCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCCCCC
Confidence 99999999999999999999999998877778899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHh
Q 011320 173 HNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (488)
Q Consensus 173 Kt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~ 251 (488)
||||+++|+++.. +| ++|+++|||| +|+.+|+++.++++ .++|||+|++|||+||.+|++
T Consensus 175 KSTLL~~I~~~~~-------~d-----------v~Vi~lIGER~rEv~efi~~~l~~~-~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 175 KSVLLGMMTRGTT-------AD-----------VIVVGLVGERGREVKEFIEEILGEE-GRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred hhHHHHHhccCCC-------CC-----------EEEEEEEcCChHHHHHHHHHhhccC-CcccEEEEEECCCCCHHHHHH
Confidence 9999999987543 33 8899999999 55566666656665 499999999999999999999
Q ss_pred HHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeE
Q 011320 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPI 331 (488)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~ 331 (488)
++|+|+|+||||| |+|+||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||+...++||||+||+
T Consensus 236 a~~~A~tiAEyfr-d~G~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~~~~GSITai~t 314 (444)
T PRK08972 236 GCETATTIAEYFR-DQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGGPGQGSITAFYT 314 (444)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCCCCCceeeeEEE
Confidence 9999999999999 899999999999999999999999999999999999999999999999999986445899999999
Q ss_pred EeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHH---HHHHHHHHccc
Q 011320 332 LTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVS---NQLYANYAIGK 408 (488)
Q Consensus 332 v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~---~~l~~~y~~~~ 408 (488)
|++|+||++|||+|+++||+||||+|||+||++||||||||+.|+||+|+.++ +++|++++ +++++.|++.+
T Consensus 315 Vl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~i~-----~~~h~~~a~~~r~~ls~y~~~e 389 (444)
T PRK08972 315 VLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMVI-----SEEHLEAMRRVKQVYSLYQQNR 389 (444)
T ss_pred EEEeCCCCCcchHHhhhhhcceEEEEcHHHHhCCCCCeeCCccccccCchhcC-----cHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999755 47999999 56788888889
Q ss_pred cHHHHHHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHh
Q 011320 409 DVQAMKAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRI 464 (488)
Q Consensus 409 ~l~~~~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~ 464 (488)
+++++++|. |. +++-+.++++.++|. +||+|+.+++.++++++..|.++++.
T Consensus 390 ~li~~g~y~~g~---d~~~d~ai~~~~~i~-~fl~Q~~~~~~~~~~~~~~l~~~~~~ 442 (444)
T PRK08972 390 DLISIGAYKQGS---DPRIDNAIRLQPAMN-AFLQQTMKEAVPYDMSVNMLKQLAAQ 442 (444)
T ss_pred HHHHHhCccCCC---CHHHHHHHHhhHHHH-HHhCCCCCCCCCHHHHHHHHHHHHhh
Confidence 999999997 64 567777899999996 89999999999999999999999864
No 18
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=2.3e-109 Score=883.64 Aligned_cols=424 Identities=27% Similarity=0.384 Sum_probs=394.4
Q ss_pred cCCccc-cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcC
Q 011320 12 EGTLEV-AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTG 90 (488)
Q Consensus 12 ~~~~~~-~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg 90 (488)
.|+..+ .+.+|+|++|.|++++++|+..+++||+|+|. +| ..|+|++++++.+.+++|+++.|++. |++|.+||
T Consensus 17 ~~~~~~~~~~~G~V~~v~g~ii~v~g~~~~~~ge~~~i~--~~--~~g~Vi~~~~~~~~~~~~~~~~gi~~-G~~V~~tg 91 (501)
T TIGR00962 17 NFEKDIEMEEVGTVVSVGDGIARVYGLENVMSGELIEFE--GG--VQGIALNLEEDSVGAVIMGDYSNIRE-GSTVKRTG 91 (501)
T ss_pred hcCCcceeEEEEEEEEEeCCEEEEECCcCCCCCCEEEEC--CC--eEEEEEEecCCeEEEEEecCCcCCCC-CCeeEecC
Confidence 455544 44789999999999999999889999999993 44 68999999999999999999999995 99999999
Q ss_pred CeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCC
Q 011320 91 EVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAG 170 (488)
Q Consensus 91 ~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G 170 (488)
++++||||++|||||+|++|+|||+.+++....++++++.||+|++|.++++||+||||+||+|+|||||||+||||++|
T Consensus 92 ~~~~v~vg~~llGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~~g 171 (501)
T TIGR00962 92 RILKVPVGDGLLGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQ 171 (501)
T ss_pred CccEEecChHhcCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecCCC
Confidence 99999999999999999999999999888777788999999999999999999999999999999999999999999999
Q ss_pred CChhHH-HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHH
Q 011320 171 LPHNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249 (488)
Q Consensus 171 ~GKt~L-l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r 249 (488)
+|||+| ++||++|.+ +| ++|||++||||.+++.++.+++.+.++|+||++|++|+|+||.+|
T Consensus 172 ~GKt~Lal~~i~~~~~-------~d----------v~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r 234 (501)
T TIGR00962 172 TGKTAVAIDTIINQKD-------SD----------VYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQ 234 (501)
T ss_pred CCccHHHHHHHHhhcC-------CC----------eEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHH
Confidence 999999 799999864 33 368999999997777777888888899999999999999999999
Q ss_pred HhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--CCccee
Q 011320 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSIT 327 (488)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~~GSIT 327 (488)
+++||+|||+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+++. .+||||
T Consensus 235 ~~a~~~a~aiAEyfr-d~G~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~~g~GSIT 313 (501)
T TIGR00962 235 YLAPYTGCTMAEYFR-DNGKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDEKGGGSLT 313 (501)
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCCCCCcceE
Confidence 999999999999999 89999999999999999999999999999999999999999999999999999853 379999
Q ss_pred EEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHcc
Q 011320 328 QIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG 407 (488)
Q Consensus 328 ~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~ 407 (488)
+||+|++|+||++|||||+++|||||||+|||+||++||||||||+.|+||+|++++. ++|++++.+++..|+++
T Consensus 314 al~~V~~~~dD~s~pI~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~~-----~~~~~~a~~lr~~la~y 388 (501)
T TIGR00962 314 ALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAAQI-----KAMKQVAGSLRLELAQY 388 (501)
T ss_pred EEEEEECCCCCCCCcchHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccCccccC-----HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998654 69999999999999999
Q ss_pred ccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcc
Q 011320 408 KDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFP 466 (488)
Q Consensus 408 ~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~ 466 (488)
++++++.++ | ..++++.+.+++++++|+ .||+|+.+++.++++++..++.+...++
T Consensus 389 ~e~~~l~~~-g-~~ld~~~~~~l~~~~~i~-~fL~Q~~~~~~~~~~q~~~l~a~~~G~l 444 (501)
T TIGR00962 389 RELEAFSQF-A-SDLDEATKAQLERGKRLV-ELLKQPQYKPLPVEEQVVILYAGTKGYL 444 (501)
T ss_pred HHHHHHHHH-h-ccCCHHHHHHHHHHHHHH-HHhcCCCCCCcCHHHHHHHHHHHhcCCc
Confidence 999999987 5 458999999999999996 8999999999999999888887755543
No 19
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=3.1e-109 Score=873.95 Aligned_cols=437 Identities=25% Similarity=0.367 Sum_probs=388.6
Q ss_pred CCccccceeeEEEEEECCEEEEeccCC--CCCCcEEEEEeCC--Cc--eeEEEEEEEEC-CeEEEEEccCCCCCccCCCE
Q 011320 13 GTLEVAMEYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGD--GT--MRRGQVLEVDG-EKAVVQVFEGTSGIDNKFTT 85 (488)
Q Consensus 13 ~~~~~~~~~G~V~~I~G~li~v~g~~~--~~igE~~~i~~~~--g~--~~~geVv~~~~-~~~~l~~~~~t~Gl~~~G~~ 85 (488)
++.-..+.+|+|++|.|.+|++.|... +.+||+|.|...+ +. .+.+||++|.+ +.+.+++|++++||+. |++
T Consensus 8 ~~~~~~~~~G~V~~v~G~viev~~~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~-G~~ 86 (494)
T CHL00060 8 VSTLEEKNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMR-GME 86 (494)
T ss_pred ccccccccceEEEEEEccEEEEEecCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCC-CCE
Confidence 344455688999999999999998742 3349999994323 31 47899999999 9999999999999995 999
Q ss_pred EEEcCCeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEe
Q 011320 86 VQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPL 165 (488)
Q Consensus 86 V~~tg~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gI 165 (488)
|..||++++||||++|||||+|++|+|||+++++....++++++.||+|++|.++++||+||||+||+|+|||||||+||
T Consensus 87 V~~tg~~~~vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gI 166 (494)
T CHL00060 87 VIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGL 166 (494)
T ss_pred EEeCCCcceeecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEee
Confidence 99999999999999999999999999999998887777789999999999999999999999999999999999999999
Q ss_pred ccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCC-------cceEEEE
Q 011320 166 FSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGS-------MERVTLF 238 (488)
Q Consensus 166 fg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~-------~~~tvvv 238 (488)
||++|+|||+|+.|++++....+ .| +|||++||||.+++.++++++.+.++ ++||++|
T Consensus 167 fgg~GvGKs~L~~~~~~~~~~~~----~d-----------v~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv 231 (494)
T CHL00060 167 FGGAGVGKTVLIMELINNIAKAH----GG-----------VSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALV 231 (494)
T ss_pred ecCCCCChhHHHHHHHHHHHHhc----CC-----------eEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEE
Confidence 99999999999999999832111 13 99999999995444444455555333 6689999
Q ss_pred EeCCCCCHHHHHhHHHHHHHHHHHhhHhcCC-eEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhc
Q 011320 239 LNLANDPTIERIITPRIALTTAEYLAYECGK-HVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAG 317 (488)
Q Consensus 239 ~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~-~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag 317 (488)
++|+|+||++|++++|+|+|+||||| |+|+ ||||+|||+||||+|+||||+++||||+++|||||+|+.||+|+||||
T Consensus 232 ~atsd~p~~~R~~a~~~A~tiAEyfr-d~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG 310 (494)
T CHL00060 232 YGQMNEPPGARMRVGLTALTMAEYFR-DVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERIT 310 (494)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHH-HcCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhcc
Confidence 99999999999999999999999999 7876 999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHH
Q 011320 318 RIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVS 397 (488)
Q Consensus 318 ~~~~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~ 397 (488)
+. .+||||+||+|++|+||++|||+|+++|||||||+|||+||++||||||||+.|+||++.+ ++++++|++++
T Consensus 311 ~~--~~GSITai~tVl~~gdD~tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~----~~v~~~h~~~a 384 (494)
T CHL00060 311 ST--KEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP----RIVGEEHYETA 384 (494)
T ss_pred CC--CCCCeeEEEEEECCCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhccc----ccCCHHHHHHH
Confidence 85 4799999999999999999999999999999999999999999999999999999999432 34557999999
Q ss_pred HHHHHHHHccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCC----------CCCCHHHHHHHHHHHHHhc--
Q 011320 398 NQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAY----------DSRNIFQSLDLAWTLLRIF-- 465 (488)
Q Consensus 398 ~~l~~~y~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~----------~~~~~~~~~~~~~~~~~~~-- 465 (488)
+++++.|+++++++++.++.|.++++++++++++++++|+ .||+|++| +..+++++++.+.++++..
T Consensus 385 ~~~r~~la~y~e~e~li~~~g~~~ls~~~~~~i~~~~~i~-~fL~Q~~f~~e~ft~~~~~~~~~~~~~~~l~~i~~g~~~ 463 (494)
T CHL00060 385 QRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIE-RFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLILSGELD 463 (494)
T ss_pred HHHHHHHHHhHHHHHHHHHhCcccCCHHHHHHHHhHHHHH-HHhcCCcchhhcccCCCCcccCHHHHHHHHHHHhCCCcc
Confidence 9999999999999999998898999999999999999996 99999955 8889999999999987743
Q ss_pred --chhhhcCC
Q 011320 466 --PRELLHRI 473 (488)
Q Consensus 466 --~~~~~~~~ 473 (488)
+...++++
T Consensus 464 ~~~~~~~~~~ 473 (494)
T CHL00060 464 GLPEQAFYLV 473 (494)
T ss_pred CCCHHHhhcc
Confidence 44445443
No 20
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=4.6e-109 Score=871.03 Aligned_cols=419 Identities=25% Similarity=0.338 Sum_probs=392.3
Q ss_pred cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEec
Q 011320 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (488)
Q Consensus 18 ~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vpv 97 (488)
....|+|++|.|.++++.|+..+.+||+|.|. +| ..|+|++++++.+.+++|+++.||+. |++|.+||++++|||
T Consensus 4 ~~~~G~V~~v~~~ii~v~Gl~~~~~ge~~~i~--~~--~~g~vi~~~~~~v~~~~l~~~~gi~~-G~~V~~tg~~~~vpv 78 (485)
T CHL00059 4 IVNTGTVLQVGDGIARIYGLDEVMAGELVEFE--DG--TIGIALNLESNNVGVVLMGDGLMIQE-GSSVKATGKIAQIPV 78 (485)
T ss_pred eeeeEEEEEEeccEEEEeccccCCcCCEEEEC--CC--CEEEEEEEcCCEEEEEEeeCCCCCCC-CCEEEECCCcceEEc
Confidence 35689999999999999999889999999993 44 58999999999999999999999995 999999999999999
Q ss_pred CccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHH-
Q 011320 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI- 176 (488)
Q Consensus 98 G~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~L- 176 (488)
|++|||||+|++|+|||+.+++....++++++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|
T Consensus 79 g~~llGRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~La 158 (485)
T CHL00059 79 SEAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVA 158 (485)
T ss_pred CHhhcCCEECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHH
Confidence 9999999999999999999988777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHH
Q 011320 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (488)
Q Consensus 177 l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a 256 (488)
+.+|++|.+ +| ++|||++||||.+++.++.+++.+.++|+||++|++|+|+||.+|+++||+|
T Consensus 159 l~~I~~q~~-------~d----------v~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a 221 (485)
T CHL00059 159 TDTILNQKG-------QN----------VICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTG 221 (485)
T ss_pred HHHHHhccc-------CC----------eEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHH
Confidence 899988854 23 5789999999977777778888888999999999999999999999999999
Q ss_pred HHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--CCcceeEEeEEee
Q 011320 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSITQIPILTM 334 (488)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~~GSIT~i~~v~~ 334 (488)
|||||||| ++|+||||++||+||||+|+||||+++||||+++||||++|+.||+|+||||+++. .+||||+||+|++
T Consensus 222 ~aiAEyfr-~~G~~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~~~~GSITal~~V~~ 300 (485)
T CHL00059 222 AALAEYFM-YRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVET 300 (485)
T ss_pred hhHHHHHH-HcCCCEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCCCCCcceEEEEEEEc
Confidence 99999999 89999999999999999999999999999999999999999999999999999853 4899999999999
Q ss_pred cCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHH
Q 011320 335 PNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMK 414 (488)
Q Consensus 335 ~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~ 414 (488)
++||++|||||+++|||||||||||+||++||||||||+.|+||+|++++. ++|++++.+++..|++|++++.+.
T Consensus 301 ~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRvg~~aq~-----~~~~~~a~~lr~~la~y~e~e~~~ 375 (485)
T CHL00059 301 QAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQI-----KAMKQVAGKLKLELAQFAELEAFA 375 (485)
T ss_pred cCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCcccchhcCCchhhc-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998664 689999999999999999999999
Q ss_pred HHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcch
Q 011320 415 AVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPR 467 (488)
Q Consensus 415 ~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~ 467 (488)
++. ..++++.+.++++.++++ .||+|+.+++.++++++..++...+.++.
T Consensus 376 ~~~--~~~d~~~~~~i~~~~~i~-~~L~Q~~~~~~~~~e~~~~l~a~~~g~l~ 425 (485)
T CHL00059 376 QFA--SDLDKATQNQLARGQRLR-ELLKQSQSAPLTVEEQVATIYTGTNGYLD 425 (485)
T ss_pred Hhh--cCCCHHHHHHHHhHHHHH-HHhcCCCCCCCCHHHHHHHHHHhccCCcC
Confidence 873 457888999999999996 89999999999999999988887666654
No 21
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.2e-109 Score=884.19 Aligned_cols=419 Identities=26% Similarity=0.438 Sum_probs=379.7
Q ss_pred eeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecCc
Q 011320 20 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSL 99 (488)
Q Consensus 20 ~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG~ 99 (488)
++|+|++|+|++|+++|+..+++||+|+|. + ..+.|||++|+++.+++|+|++|+||++ |++|..||++++|++||
T Consensus 1 ~~G~V~~v~G~vV~a~g~~~~~~gE~v~v~--~-~~l~gEVI~l~~d~a~iq~ye~t~Gl~~-G~~V~~tg~~lsv~lGp 76 (591)
T TIGR01042 1 EYGYIYKVSGPVVVAENMAGAAMYELVRVG--H-DELVGEIIRLEGDKATIQVYEETSGLTV-GDPVLRTGKPLSVELGP 76 (591)
T ss_pred CceEEEEEECCEEEEecCCCCCcCCEEEEC--C-CceEEEEEEEcCCeEEEEEccCccCCCC-CCEEEeCCCccEEEcCH
Confidence 479999999999999999889999999993 2 2479999999999999999999999997 99999999999999999
Q ss_pred cccceEecCCCcccCCCC----C-----------CCCC------------------------------------------
Q 011320 100 DMLGRIFNGSGKPIDNGP----P-----------ILPE------------------------------------------ 122 (488)
Q Consensus 100 ~lLGRVlD~lG~PlDg~~----~-----------~~~~------------------------------------------ 122 (488)
+|||||+|++|||||+.+ + +...
T Consensus 77 glLG~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~ 156 (591)
T TIGR01042 77 GILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRAR 156 (591)
T ss_pred HHhhcccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCc
Confidence 999999999999999753 1 1100
Q ss_pred ---------------------------------ceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCC
Q 011320 123 ---------------------------------AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (488)
Q Consensus 123 ---------------------------------~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~ 169 (488)
.+||+.. |+++++|.++++||.||+|+||+|+|||+|||++|||++
T Consensus 157 g~v~~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~ 235 (591)
T TIGR01042 157 GTITYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAF 235 (591)
T ss_pred eEEEEEccCCCceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCC
Confidence 1578887 889999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhh---------ccCCCcceEEEEE
Q 011320 170 GLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDF---------EENGSMERVTLFL 239 (488)
Q Consensus 170 G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l---------~~~~~~~~tvvv~ 239 (488)
|+|||+|++||++|++ || ++||++|||| +|+.+++.+ | .++++|+||++|+
T Consensus 236 G~GKT~l~~~lak~s~-------aD-----------viVyvg~GERG~Em~evle~-fp~l~dp~~g~~~~~m~rtvlVa 296 (591)
T TIGR01042 236 GCGKTVISQSLSKYSN-------SD-----------AIVYVGCGERGNEMAEVLMD-FPELTMEVDGREESIMKRTTLVA 296 (591)
T ss_pred CcCHHHHHHHHHhccC-------cC-----------EEEEEEEeechHHHHHHHHH-hHhhcccccccccccccceEEEE
Confidence 9999999999999875 56 9999999999 676666654 3 2345799999999
Q ss_pred eCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhccc
Q 011320 240 NLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRI 319 (488)
Q Consensus 240 ~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~ 319 (488)
||||+|+++|++++|+|+||||||| |||+|||||+||+||||+|+||||+++||||+++|||+|||++||+||||||++
T Consensus 297 ~tsd~p~~~R~~s~ytg~tiAEYfR-D~G~~Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~ 375 (591)
T TIGR01042 297 NTSNMPVAAREASIYTGITLAEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRV 375 (591)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHH-hcCCCEEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCC
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999998
Q ss_pred C-----CCCcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccc-cccH
Q 011320 320 E-----GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMT-RRDH 393 (488)
Q Consensus 320 ~-----~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~-~~~h 393 (488)
+ .++||||+|++|++||||++|||++++++|+|+||+|||+||++||||||||+.|+||+|+.+..++.. +++|
T Consensus 376 ~~~~~~~~~GSIT~i~aVs~~ggD~sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~~~l~~~~~~~~~~~ 455 (591)
T TIGR01042 376 KCLGSPEREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEF 455 (591)
T ss_pred ccCCCCCCCccEEEEEEEECCCCCCCCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhhhhcccccccCCHHH
Confidence 5 347999999999999999999999999999999999999999999999999999999999987543222 4789
Q ss_pred HHHHHHHHHHHHccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCC----CHHHHHHHHHHHHH
Q 011320 394 SDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSR----NIFQSLDLAWTLLR 463 (488)
Q Consensus 394 ~~~~~~l~~~y~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~----~~~~~~~~~~~~~~ 463 (488)
.+++++++..|+++++++++.++.|.+++++.|+..+++++.+++.||+|++|+.. ++++++..+..++.
T Consensus 456 ~~~~~~~~~lL~~~~el~eiv~l~g~~~l~~~d~~i~~~a~~i~e~FLqQ~a~~~~d~~~~~~kt~~~L~~i~~ 529 (591)
T TIGR01042 456 VPLRTKAKEILQEEEDLNEIVQLVGKDALAETDKITLEVAKLIKEDFLQQNGYTPYDRFCPFYKTVGMMRNMIA 529 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHhCCCCCCCCccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998999999966654 66666666655543
No 22
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=7.3e-107 Score=852.11 Aligned_cols=419 Identities=24% Similarity=0.409 Sum_probs=386.5
Q ss_pred ccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCc---eeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCC
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGT---MRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGE 91 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~---~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~ 91 (488)
.+..+.+|+|++|.|++|++.|+. +++||+|.|...++. .+.|||++|+++.+.+++|+++.||+. |++|++||+
T Consensus 22 ~~~~~~~g~v~~v~g~~~~~~g~~-~~~ge~c~i~~~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~V~~tg~ 99 (451)
T PRK05688 22 PAQPVVEGRLLRMVGLTLEAEGLR-AAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAP-GARVVPLAD 99 (451)
T ss_pred CCccceeeEEEEEEecEEEEecCC-CCCCCEEEEecCCCccccceEEEEEEEcCCEEEEEEccCccCCCC-CCEEEECCC
Confidence 467789999999999999999975 799999999543442 478999999999999999999999996 999999999
Q ss_pred eeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCC
Q 011320 92 VLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 171 (488)
Q Consensus 92 ~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~ 171 (488)
+++||||++|||||+|++|+|||+.+++....++++++.||+|++|.++++||+|||++||.|+|+++|||++|||++|+
T Consensus 100 ~~~v~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~ 179 (451)
T PRK05688 100 TGRLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGV 179 (451)
T ss_pred ccEEEecccccCCEEeccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCCCC
Confidence 99999999999999999999999998887777889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHh
Q 011320 172 PHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (488)
Q Consensus 172 GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~ 251 (488)
|||+|+++|+++.. .| ++|+++||++.+++.++.+.+.+.+.++|||+|++|+|+||.+|++
T Consensus 180 GKSTLl~~I~g~~~-------~d-----------v~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 180 GKSVLLGMMTRFTE-------AD-----------IIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CHHHHHHHHhCCCC-------CC-----------EEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 99999999977542 23 8899999999666666677777777899999999999999999999
Q ss_pred HHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeE
Q 011320 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPI 331 (488)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~ 331 (488)
++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+|+||||+.++.+||||+|||
T Consensus 242 a~~~a~aiAEyfr-d~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~~~~GSITai~t 320 (451)
T PRK05688 242 AAMYCTRIAEYFR-DKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAEPGGGSITAFYT 320 (451)
T ss_pred HHHHHHHHHHHHH-HCCCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCCCCCceeeEEEE
Confidence 9999999999999 899999999999999999999999999999999999999999999999999986434899999999
Q ss_pred EeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHH---HHHHHHHccc
Q 011320 332 LTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSN---QLYANYAIGK 408 (488)
Q Consensus 332 v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~---~l~~~y~~~~ 408 (488)
|++|+||++|||+|+++|||||||+|||+||++||||||||+.|+||+|+.+++ ++|++++. ++++.|++.+
T Consensus 321 Vl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~~-----~~~~~~a~~~r~~la~y~~~~ 395 (451)
T PRK05688 321 VLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQVVD-----PEHLRRAQRFKQLWSRYQQSR 395 (451)
T ss_pred EEecCCCCCCchHHHHHhhccEEEEEcHHHHhCCCCCccCCccccCccchhhCC-----HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999997654 79999995 5677777778
Q ss_pred cHHHHHHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011320 409 DVQAMKAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 409 ~l~~~~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
+|+++++|. |.| ++.++++.++++++ +||+|+.+++.+++++++.|.++++
T Consensus 396 dli~~g~y~~g~d---~~~d~ai~~~~~i~-~fL~Q~~~e~~~~~~~~~~l~~~~~ 447 (451)
T PRK05688 396 DLISVGAYVAGGD---PETDLAIARFPHLV-QFLRQGLRENVSLAQSREQLAAIFA 447 (451)
T ss_pred HHHHHhCccCCCC---HHHHHHHHhhHHHH-HHhCCCCCCCCCHHHHHHHHHHHhc
Confidence 999999997 654 57888999999995 8999999999999999999999874
No 23
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=8.6e-107 Score=856.40 Aligned_cols=413 Identities=20% Similarity=0.256 Sum_probs=379.5
Q ss_pred EEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecCcccc
Q 011320 23 TVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDML 102 (488)
Q Consensus 23 ~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG~~lL 102 (488)
+|++|.|.++++.|+..+.+||+|+| +++....|+|++++++.+.+++|+++.||+. |++|.+||++++||||++||
T Consensus 4 ~V~~v~~~i~~v~Gl~~~~~ge~~~~--~~~~~~~g~V~~~~~~~v~~~~l~~~~gi~~-G~~V~~tg~~~~vpvg~~lL 80 (507)
T PRK07165 4 KIKSIFDYIVEVKGEYDYQQNQFFTL--KNNPNVKAFVISATEDKAYLLINNEKGKIKI-NDELIELNNTNKVKTSKEYF 80 (507)
T ss_pred EEEEEeceEEEEEcccCCCcCCEEEE--CCCCeEEEEEEEEeCCeEEEEEccCccCCCC-CCEEEECCCccEEECCcccc
Confidence 78999999999999988999999999 3343478999999999999999999999996 99999999999999999999
Q ss_pred ceEecCCCcccCCCCCCCC-----CceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHH-
Q 011320 103 GRIFNGSGKPIDNGPPILP-----EAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI- 176 (488)
Q Consensus 103 GRVlD~lG~PlDg~~~~~~-----~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~L- 176 (488)
|||+|++|+|||+++++.. ...+++++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|
T Consensus 81 GRVvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~la 160 (507)
T PRK07165 81 GKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHIA 160 (507)
T ss_pred CCEECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHHH
Confidence 9999999999999987665 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHH
Q 011320 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (488)
Q Consensus 177 l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a 256 (488)
+++|++|.+ + +++|||++||||.+++.++.+++.++++|+||++|++|+| ||.+|+++||+|
T Consensus 161 l~~I~~q~~-------~----------dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~atsd-~~~~r~~ap~~a 222 (507)
T PRK07165 161 LNTIINQKN-------T----------NVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPST-SPYEQYLAPYVA 222 (507)
T ss_pred HHHHHHhcC-------C----------CeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCCC-CHHHHHHHHHHH
Confidence 799998864 2 3578999999998888888899999999999999999985 999999999999
Q ss_pred HHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecC
Q 011320 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPN 336 (488)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~ 336 (488)
||+||||| ++ +|||+++||+||||+|+||||+++||||+++|||||+|+.||+||||||++++ +||||++|+|++++
T Consensus 223 ~tiAEyfr-d~-~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~g-~GSITalpiV~t~~ 299 (507)
T PRK07165 223 MAHAENIS-YN-DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFKN-RKTITALPILQTVD 299 (507)
T ss_pred HHHHHHHH-hc-CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCCC-CCceEEEEEEECCC
Confidence 99999999 78 99999999999999999999999999999999999999999999999999854 79999999999999
Q ss_pred CCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHH
Q 011320 337 DDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 416 (488)
Q Consensus 337 dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~ 416 (488)
||++|||||+++|||||||||||+||++||||||||+.|+||+|+.+++ +.|++++..++..|+++++++++.++
T Consensus 300 dDis~pIpdnv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~~~~q~-----~~~~~~a~~~r~~la~Y~e~e~~~~~ 374 (507)
T PRK07165 300 NDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSVQS-----KTITKVAGEISKIYRAYKRQLKLSML 374 (507)
T ss_pred CCCCCcchhhhccccCeEEEEcHHHHhCCCCCCcCCccchhhccccccC-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998776 57888998777777777777777765
Q ss_pred hCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHH----HHHHHhcch
Q 011320 417 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLA----WTLLRIFPR 467 (488)
Q Consensus 417 ~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~----~~~~~~~~~ 467 (488)
|.+ ++++++.+++++++++ +||+|+.+++.+..+++..+ |.+|+.++.
T Consensus 375 -~~~-ld~~~~~~l~~g~~i~-~~L~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 426 (507)
T PRK07165 375 -DYD-LNKETSDLLFKGKMIE-KMFNQKGFSLYSYRFVLLISKLISWGLLKDVKD 426 (507)
T ss_pred -HHh-CCHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHhhhhhhCCc
Confidence 554 9999999999999996 89999999999888766643 666666655
No 24
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=4.1e-106 Score=847.12 Aligned_cols=416 Identities=26% Similarity=0.444 Sum_probs=383.0
Q ss_pred ccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCce-eEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCee
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTM-RRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~-~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~ 93 (488)
.++.+.+|+|++|.|++++++|+. +++||+|+|...+|.. ..|||++|+++++++|||++++||+. |++|.+||+++
T Consensus 19 ~~~~~~~G~V~~v~g~~i~~~g~~-~~~ge~~~i~~~~g~~~~~~eVv~~~~~~~~l~~~~~t~gi~~-g~~V~~tg~~~ 96 (441)
T PRK09099 19 LPAVRRTGKVVEVIGTLLRVSGLD-VTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGELGGLSR-GTRVIGLGRPL 96 (441)
T ss_pred CCcceEeeEEEEEECCEEEEeccC-CCCCCEEEEecCCCCeeeEEEEEEEECCEEEEEEccCCcCCCC-CCEEEeCCCcc
Confidence 567889999999999999999985 8999999996445553 68999999999999999999999995 99999999999
Q ss_pred eEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCCh
Q 011320 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (488)
Q Consensus 94 ~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GK 173 (488)
+||||++|||||+|++|+|||+.+++...+++++++.||+|++|.++++||.||+++||.++|+++|||++|||++|+||
T Consensus 97 ~v~vg~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GK 176 (441)
T PRK09099 97 SVPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGK 176 (441)
T ss_pred EEEeccccccCEEcccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCH
Confidence 99999999999999999999999888777788999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHH
Q 011320 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITP 253 (488)
Q Consensus 174 t~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~ 253 (488)
|+|+++|+++.. +| .+||++||||.+++.++.+.+.+.+.++||++|++|+|+||.+|++++
T Consensus 177 TtLl~~ia~~~~-------~d-----------~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 177 STLMGMFARGTQ-------CD-----------VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred HHHHHHHhCCCC-------CC-----------eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 999999987653 33 789999999966666666666666679999999999999999999999
Q ss_pred HHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEe
Q 011320 254 RIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILT 333 (488)
Q Consensus 254 ~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~ 333 (488)
|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+||||||. +++||||+||||+
T Consensus 239 ~~a~tiAEyfr-d~G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~--~~~GSIT~i~tVl 315 (441)
T PRK09099 239 YVATAIAEYFR-DRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGM--GETGSITALYTVL 315 (441)
T ss_pred HHHHHHHHHHH-HcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcC--CCCcchheeEEEE
Confidence 99999999999 89999999999999999999999999999999999999999999999999996 4589999999999
Q ss_pred ecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHH
Q 011320 334 MPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAM 413 (488)
Q Consensus 334 ~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~ 413 (488)
+++||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+++ ++|+++++++++.|+++++++++
T Consensus 316 ~~~dd~~dpI~d~~~~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~-----~~~~~~a~~lr~~la~y~e~e~l 390 (441)
T PRK09099 316 AEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVP-----REHVQAAGRLRQLLAKHREVETL 390 (441)
T ss_pred ecCCCcCCcchhhhheecceEEEEcHHHHhCCCCCccCCccccCccchhcCC-----HHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999997654 79999998887777777777776
Q ss_pred HHH----hCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q 011320 414 KAV----VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLL 462 (488)
Q Consensus 414 ~~~----~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~ 462 (488)
.++ .|.|+++++ .++++++|+ +||+|+.+++.++++++..+.+++
T Consensus 391 i~iG~y~~g~d~~~d~---~i~~~~~i~-~fL~Q~~~~~~~~~~t~~~l~~~~ 439 (441)
T PRK09099 391 LQVGEYRAGSDPVADE---AIAKIDAIR-DFLSQRTDEYSDPDATLAALAELS 439 (441)
T ss_pred HHhcCccCCCChhHHH---HHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHh
Confidence 666 588887776 488999996 999999999999999999998876
No 25
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=5.9e-105 Score=836.79 Aligned_cols=437 Identities=22% Similarity=0.308 Sum_probs=394.3
Q ss_pred ccceeeEEEEEECCEEEE---eccCCCCCCcEEEEEeCCCceeEEEEEEEECC-eEEEEEccCCCCCccCCCEEEEcCCe
Q 011320 17 VAMEYRTVTGVAGPLVIL---DKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGE-KAVVQVFEGTSGIDNKFTTVQFTGEV 92 (488)
Q Consensus 17 ~~~~~G~V~~I~G~li~v---~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~-~~~l~~~~~t~Gl~~~G~~V~~tg~~ 92 (488)
...+.|+|.+|.|.++++ .|+.++..||++++..++++...|.|+.++++ .+.+++|++++||+ .|++|.+||++
T Consensus 36 ~~~~~G~V~~v~~gia~v~~v~Gl~~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~-~G~~V~~tg~~ 114 (574)
T PTZ00185 36 ATEMIGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQ-SGQKVMATGKL 114 (574)
T ss_pred hheeeEEEEEEcCeEEEEeecCCCcccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCC-CCCEEEECCCc
Confidence 344789999998879985 89999999999999755555568999999999 69999999999999 49999999999
Q ss_pred eeEecCccccceEecCCCcccCCC------CCCCCC-ceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEe
Q 011320 93 LKTPVSLDMLGRIFNGSGKPIDNG------PPILPE-AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPL 165 (488)
Q Consensus 93 ~~VpvG~~lLGRVlD~lG~PlDg~------~~~~~~-~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gI 165 (488)
++||||++|||||+|++|+|||++ +++... .++++++.||+|++|.++++||+||||+||+|+|||||||+||
T Consensus 115 ~~VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~lI 194 (574)
T PTZ00185 115 LYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQRELI 194 (574)
T ss_pred cEEECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCEEEe
Confidence 999999999999999999999987 444444 4679999999999999999999999999999999999999999
Q ss_pred ccCCCCChhHH-HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCC
Q 011320 166 FSAAGLPHNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLAND 244 (488)
Q Consensus 166 fg~~G~GKt~L-l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~ 244 (488)
||++|+|||+| +.+|++|..... .. ...+.++|||++||||.+++.++++.|+++|+|+||++|++++|+
T Consensus 195 fGd~GtGKTtLAld~IinQ~~~~~--------~~-~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAde 265 (574)
T PTZ00185 195 VGDRQTGKTSIAVSTIINQVRINQ--------QI-LSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAE 265 (574)
T ss_pred ecCCCCChHHHHHHHHHhhhhhcc--------cc-ccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCC
Confidence 99999999999 799999963100 00 012345999999999977777799999999999999999999999
Q ss_pred CHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--C
Q 011320 245 PTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--R 322 (488)
Q Consensus 245 ~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~ 322 (488)
||.+|+++||+|||+||||| |+|+|||+++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+++. .
T Consensus 266 p~~~r~~Apy~a~tiAEYFr-d~GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlERAg~l~~~~G 344 (574)
T PTZ00185 266 PAGLQYLAPYSGVTMGEYFM-NRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSPGKG 344 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccccCCCC
Confidence 99999999999999999999 89999999999999999999999999999999999999999999999999999864 2
Q ss_pred CcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHH
Q 011320 323 KGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYA 402 (488)
Q Consensus 323 ~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~ 402 (488)
+||||+||+|++++||++|||||+++|||||||||||+||++|+||||||+.|+||+++++|. +.|+++|.+++.
T Consensus 345 ~GSITAlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg~~aq~-----~~~k~vAg~lr~ 419 (574)
T PTZ00185 345 GGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSAQN-----VAMKAVAGKLKG 419 (574)
T ss_pred CcceEEEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccCCccCC-----HHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999998765 579999999999
Q ss_pred HHHccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhh
Q 011320 403 NYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQY 481 (488)
Q Consensus 403 ~y~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (488)
.|+++++++.+.+. | |+.|...|++.+++. +.|+|+. +.++++++..+++..+.++. .+|-+.+..|
T Consensus 420 ~LaqY~El~~fa~f-g----sdld~~~l~rG~r~~-ellkQ~~--p~~~~~qv~~l~a~~~g~ld----~~~~~~i~~~ 486 (574)
T PTZ00185 420 ILAEYRKLAADSVG-G----SQVQTVPMIRGARFV-ALFNQKN--PSFFMNALVSLYACLNGYLD----DVKVNYAKLY 486 (574)
T ss_pred HHHHHHHHHHHHhh-c----chhhHHHHHhhHHHH-HHHCCCC--CCCHHHHHHHHHHHhcCCcc----cCcHHHHHHH
Confidence 99999999999874 4 344448899999996 8999998 89999999999998887765 4555666655
No 26
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=7.7e-105 Score=834.13 Aligned_cols=414 Identities=26% Similarity=0.399 Sum_probs=372.7
Q ss_pred eEEEEEECCEEEEeccCCC-CCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecCcc
Q 011320 22 RTVTGVAGPLVILDKVKGP-KYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLD 100 (488)
Q Consensus 22 G~V~~I~G~li~v~g~~~~-~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG~~ 100 (488)
|+|++|.|++++++|+..+ ++||+|+|..+++....|||++|+++.+.+++|++++||+. |++|.+||++++||||++
T Consensus 1 G~v~~v~g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~~~gi~~-G~~V~~tg~~~~i~vg~~ 79 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGL-GCAVFAREGPLAVRPHPS 79 (418)
T ss_pred CEEEEEECcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCCcCCCC-CCEEEECCCccEEEeChh
Confidence 8999999999999998764 99999999654554578999999999999999999999996 999999999999999999
Q ss_pred ccceEecCCCcccCCCCCCCCC-ceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHHHH
Q 011320 101 MLGRIFNGSGKPIDNGPPILPE-AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ 179 (488)
Q Consensus 101 lLGRVlD~lG~PlDg~~~~~~~-~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~ 179 (488)
|||||+|++|+|||+.+++... .++++++.||+|++|.++++||.||+++||.++|+++|||++|||++|+|||+|+.+
T Consensus 80 lLGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtLl~~ 159 (418)
T TIGR03498 80 WLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTLLSM 159 (418)
T ss_pred hcCCEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHHHHH
Confidence 9999999999999999877555 468999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHH
Q 011320 180 ICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALT 258 (488)
Q Consensus 180 i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~t 258 (488)
|+++.. +| ..+|+++||| +|+.+|+++.+++++ ++||++|++|+|+||.+|++++|+|+|
T Consensus 160 I~~~~~-------~~-----------~gvi~~iGer~~ev~~~~~~~l~~~~-~~~tvvv~atsd~~~~~r~~a~~~a~~ 220 (418)
T TIGR03498 160 LARNTD-------AD-----------VVVIALVGERGREVREFLEDDLGEEG-LKRSVVVVATSDESPLMRRQAAYTATA 220 (418)
T ss_pred HhCCCC-------CC-----------EEEEEEEeeechHHHHHHHHhhhccc-cceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 987643 23 7899999999 566666666777776 999999999999999999999999999
Q ss_pred HHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCC
Q 011320 259 TAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDD 338 (488)
Q Consensus 259 iAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD 338 (488)
+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.||+|+||||+...++||||+||||++|+||
T Consensus 221 iAEyfr-d~G~~Vll~~DslTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~~~~GSIT~~~tVl~~gdd 299 (418)
T TIGR03498 221 IAEYFR-DQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGAEGKGSITGIFTVLVDGDD 299 (418)
T ss_pred HHHHHH-HcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCCCCCcceeeeEEEeccCCC
Confidence 999999 8999999999999999999999999999999999999999999999999999854458999999999999999
Q ss_pred CCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHhC
Q 011320 339 ITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAVVG 418 (488)
Q Consensus 339 ~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~~G 418 (488)
++|||+|+++|||||||+|||+||++||||||||+.|+||+|+.+++ ++|++++.+++..|++|++++++.++-+
T Consensus 300 ~~dpi~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e~~~~~~~g~ 374 (418)
T TIGR03498 300 HNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRVWS-----PEERKLVRRLRALLARYEETEDLIRLGA 374 (418)
T ss_pred CCCcchhhhheeeeeEEEECHHHHhCCCCCccCCcccccccchhhcC-----HHHHHHHHHHHHHHHhhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999997665 6899999865555555544444444322
Q ss_pred CcC-CCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q 011320 419 EEA-LSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLL 462 (488)
Q Consensus 419 ~d~-l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~ 462 (488)
..+ .+++.+.+++++++|+ +||+|+.+++.+++++++.|.+++
T Consensus 375 y~~g~d~~~d~ai~~~~~i~-~fl~Q~~~~~~~~~~~~~~l~~~~ 418 (418)
T TIGR03498 375 YRKGSDPELDEAIRLVPKIY-EFLTQGPDEPTSLQDPFADLAAIL 418 (418)
T ss_pred CcCCCCHHHHHHHHhHHHHH-HHhCCCCCCCCCHHHHHHHHHhhC
Confidence 222 4556788899999996 899999999999999999998763
No 27
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=2e-104 Score=833.27 Aligned_cols=415 Identities=24% Similarity=0.401 Sum_probs=375.4
Q ss_pred cCCcc--ccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEc
Q 011320 12 EGTLE--VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFT 89 (488)
Q Consensus 12 ~~~~~--~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~t 89 (488)
.|+.. +.+.+|+|++|.|+++++.+ ..+++||+|.|+. ++ ..|||++|+++++.++||++++||+. |++|.+|
T Consensus 19 ~~~~~~~~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~-~~--~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~v~~t 93 (440)
T PRK06820 19 RPSAPPEGLRYRGPIVEIGPTLLRASL-PGVAQGELCRIEP-QG--MLAEVVSIEQEMALLSPFASSDGLRC-GQWVTPL 93 (440)
T ss_pred hcCCCCCceeEeeEEEEEECcEEEEEE-CCCCcCCEEEEec-CC--eEEEEEEEeCCeEEEEEccCccCCCC-CCEEEEC
Confidence 44443 57789999999999999985 4689999999953 33 68999999999999999999999996 9999999
Q ss_pred CCeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCC
Q 011320 90 GEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (488)
Q Consensus 90 g~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~ 169 (488)
|++++||||++|||||+|++|||||++++. ...++|+++.||+|++|.+++++|.|||++||.|+|+++|||++|||++
T Consensus 94 g~~~~v~vg~~llGrv~d~~G~pld~~~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~s 172 (440)
T PRK06820 94 GHMHQVQVGADLAGRILDGLGAPIDGGPPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAA 172 (440)
T ss_pred CCCcEEEechhhcCCEECccCCccCCCCCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEECCC
Confidence 999999999999999999999999998866 5677899999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHH
Q 011320 170 GLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249 (488)
Q Consensus 170 G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r 249 (488)
|+|||+|+++|+++.. +| ++||++||||.+++.++.+.+...+.++|+++|++++|+||.+|
T Consensus 173 G~GKStLl~~I~~~~~-------~d-----------v~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r 234 (440)
T PRK06820 173 GVGKSTLLGMLCADSA-------AD-----------VMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALER 234 (440)
T ss_pred CCChHHHHHHHhccCC-------CC-----------EEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHH
Confidence 9999999999987653 33 88999999995455555555555567999999999999999999
Q ss_pred HhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEE
Q 011320 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQI 329 (488)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i 329 (488)
++++|+|+|+||||| |+|+||||+|||+||||+|+||||+++||||+++|||||+|+.|++|+||||+. ++||||+|
T Consensus 235 ~~a~~~a~tiAEyfr-d~G~~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~--~~GSIT~i 311 (440)
T PRK06820 235 LKGLSTATTIAEYFR-DRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS--DRGSITAF 311 (440)
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC--CCcceeEE
Confidence 999999999999999 899999999999999999999999999999999999999999999999999984 58999999
Q ss_pred eEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHH---HHHHHHc
Q 011320 330 PILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ---LYANYAI 406 (488)
Q Consensus 330 ~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~---l~~~y~~ 406 (488)
|||++|+||++|||+|++++||||||+|||+||++||||||||+.|+||+|+.+++ ++|++++++ +++.|++
T Consensus 312 ~tVl~~gdD~~dpI~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e 386 (440)
T PRK06820 312 YTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQIVS-----AGQLAMAQKLRRMLACYQE 386 (440)
T ss_pred EEEEccCCCCCCcchhhhccccceEEEECHHHHhCCCCCccCCcccccccchhhCC-----HHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999997654 688888864 5566666
Q ss_pred cccHHHHHHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q 011320 407 GKDVQAMKAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLL 462 (488)
Q Consensus 407 ~~~l~~~~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~ 462 (488)
.++++++++|. |. +++.++++.++++++ +||+|+.++..+++++++.+|+++
T Consensus 387 ~~~li~~G~y~~g~---d~~~d~~i~~~~~i~-~fL~Q~~~e~~~~~~~~~~l~~~~ 439 (440)
T PRK06820 387 IELLVRVGEYQAGE---DLQADEALQRYPAIC-AFLQQDHSETAHLETTLEHLAQVV 439 (440)
T ss_pred HHHHHHhhCccCCC---CHHHHHHHHhhHHHH-HHhCCCCCCCCCHHHHHHHHHHHh
Confidence 66666666664 54 557778899999996 899999999999999999999986
No 28
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=5.6e-105 Score=835.60 Aligned_cols=419 Identities=25% Similarity=0.377 Sum_probs=383.6
Q ss_pred ccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCc---eeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEc--
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGT---MRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFT-- 89 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~---~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~t-- 89 (488)
.++.+.+|+|++|.|.+|++.|+ .+++||+|.|+..++. .+.+|||+|+++.+++|||++++||+. |++|.++
T Consensus 22 ~~~~~~~G~v~~v~g~~v~~~g~-~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~~~~~l~~~~~~~gi~~-g~~v~~~~~ 99 (455)
T PRK07960 22 LPAVRRYGRLTRATGLVLEATGL-QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILP-GARVYARNI 99 (455)
T ss_pred CCccccccEEEEEEEEEEEEeCC-CCCCCCEEEEEeCCCccccceeeeEEEecCCEEEEEECCCccCCCC-CCEEEECCc
Confidence 46778899999999999999986 5799999999543441 368999999999999999999999996 9999999
Q ss_pred -----CCeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEE
Q 011320 90 -----GEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIP 164 (488)
Q Consensus 90 -----g~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~g 164 (488)
|++++||||++|||||+|++|+|||+++++....+++++++||+|++|.++++||+||||+||.|+|+++|||++
T Consensus 100 ~~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~ 179 (455)
T PRK07960 100 SGEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMG 179 (455)
T ss_pred ccccCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcEEE
Confidence 999999999999999999999999999888777778999999999999999999999999999999999999999
Q ss_pred eccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCC
Q 011320 165 LFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLAND 244 (488)
Q Consensus 165 Ifg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~ 244 (488)
|||++|+|||+|+.+|+++.. .| ++|+++||+|.+++.++++++.+.+.+++++||++++|+
T Consensus 180 I~G~sG~GKTTLL~~Ia~~~~-------~d-----------~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~ 241 (455)
T PRK07960 180 LFAGSGVGKSVLLGMMARYTQ-------AD-----------VIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADV 241 (455)
T ss_pred EECCCCCCccHHHHHHhCCCC-------CC-----------EEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCC
Confidence 999999999999999987643 23 788999999965555555666666679999999999999
Q ss_pred CHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCc
Q 011320 245 PTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKG 324 (488)
Q Consensus 245 ~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~G 324 (488)
||.+|++++++|+|+||||| |+|+|||+++||+||||+|+||||+++||||+++|||||+|+.||+||||||+..+++|
T Consensus 242 ~~~~r~~~~~~a~tiAEyfr-d~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~~~~G 320 (455)
T PRK07960 242 SPLLRMQGAAYATRIAEDFR-DRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGG 320 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HcCCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCCCCCe
Confidence 99999999999999999999 89999999999999999999999999999999999999999999999999998644589
Q ss_pred ceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHH---HHHH
Q 011320 325 SITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVS---NQLY 401 (488)
Q Consensus 325 SIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~---~~l~ 401 (488)
|||+||+|++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+++ ++|++.+ ++++
T Consensus 321 SIT~i~tVlv~~dD~~dpi~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~~~~~-----~~~~~~~~~~r~~l 395 (455)
T PRK07960 321 SITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALID-----EQHYARVRQFKQLL 395 (455)
T ss_pred eeeeEEEEEEcCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCccccCC-----HHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997554 6888877 5789
Q ss_pred HHHHccccHHHHHHH-hCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011320 402 ANYAIGKDVQAMKAV-VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 402 ~~y~~~~~l~~~~~~-~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
+.|++.++++++++| .|.|++. ++++..+++|+ +||+|+.++..+++++++.|.+++.
T Consensus 396 ~~Y~~~~dli~ig~y~~G~d~~~---D~ai~~~~~i~-~fl~Q~~~e~~~~~~~~~~l~~~~~ 454 (455)
T PRK07960 396 SSFQRNRDLVSVGAYAKGSDPML---DKAIALWPQLE-AFLQQGIFERADWEDSLQALERIFP 454 (455)
T ss_pred HHHHHHHHHHHhcCccCCCCHHH---HHHHHhHHHHH-HHhCCCCCCCcCHHHHHHHHHHhhc
Confidence 999999999999999 5987763 45677889995 9999999999999999999998864
No 29
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=3.8e-104 Score=828.68 Aligned_cols=407 Identities=26% Similarity=0.436 Sum_probs=372.2
Q ss_pred eEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecCccc
Q 011320 22 RTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDM 101 (488)
Q Consensus 22 G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG~~l 101 (488)
|+|++|.|++|+++|+ .+++||+|+|...+|....|||++|+++.+.+++|+++.||+. |+.|.+||++++||+|++|
T Consensus 1 G~v~~v~g~~v~v~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~t~gl~~-G~~V~~tg~~~~v~vg~~l 78 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGL-RAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRP-GARVFPLEGPLRLPVGDSL 78 (411)
T ss_pred CEEEEEECcEEEEEeC-CCCcCCEEEEEcCCCCeEEEEEEEecCCEEEEEEccCccCCCC-CCEEEECCCccEEEcchhh
Confidence 7999999999999998 7899999999644565678999999999999999999999996 9999999999999999999
Q ss_pred cceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHHHHHH
Q 011320 102 LGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 102 LGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
||||+|++|+|||+.+++....++|+++.||+|++|.++++++.||+++||.++|+++|||++|||++|+|||+|+.+|+
T Consensus 79 lGrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~I~ 158 (411)
T TIGR03496 79 LGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGMMA 158 (411)
T ss_pred cCCEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHHHh
Confidence 99999999999999988877788999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHH
Q 011320 182 RQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAE 261 (488)
Q Consensus 182 ~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAE 261 (488)
++.. +| ++||++||||.+++.++.+++.+.+.++||++|++|+|+||.+|++++|+|+|+||
T Consensus 159 ~~~~-------~~-----------~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAE 220 (411)
T TIGR03496 159 RYTE-------AD-----------VVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAE 220 (411)
T ss_pred cCCC-------CC-----------EEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 7643 23 78899999996666666677777778999999999999999999999999999999
Q ss_pred HhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCCCCC
Q 011320 262 YLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITH 341 (488)
Q Consensus 262 yfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD~~d 341 (488)
||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||++++++||||+||+|++|+||++|
T Consensus 221 yfr-~~G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~~~~GSIT~~~tv~~~~dd~~d 299 (411)
T TIGR03496 221 YFR-DQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGEEGKGSITAFYTVLVEGDDQQD 299 (411)
T ss_pred HHH-HCCCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccCCCCcceeEEEEEEccCCCCCC
Confidence 999 8999999999999999999999999999999999999999999999999999975458999999999999999999
Q ss_pred CcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHH---HHHHHHccccHHHHHHHh-
Q 011320 342 PTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ---LYANYAIGKDVQAMKAVV- 417 (488)
Q Consensus 342 pi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~---l~~~y~~~~~l~~~~~~~- 417 (488)
||+|++++||||||+|||+||++||||||||+.|+||+++.+++ ++|++++++ +++.|++.+++++++.|.
T Consensus 300 pi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e~~~l~~~g~y~~ 374 (411)
T TIGR03496 300 PIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVMPDVVS-----PEHRQAARRFKQLLSRYQENRDLISIGAYQA 374 (411)
T ss_pred cchhhhcccccEEEEEchhHHhCCCCCccCCCcccccchhhhCC-----HHHHHHHHHHHHHHHHhHHHHHHHHhcCCcC
Confidence 99999999999999999999999999999999999999997554 799999975 555666666666666664
Q ss_pred CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHH
Q 011320 418 GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLA 458 (488)
Q Consensus 418 G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~ 458 (488)
|.|+ +.+++++++++|+ +||+|+++++.+++++++.|
T Consensus 375 g~d~---~~d~~i~~~~~i~-~fl~Q~~~~~~~~~~~~~~l 411 (411)
T TIGR03496 375 GSDP---ELDQAIALYPRIE-AFLQQGMRERASFEESLEAL 411 (411)
T ss_pred CCCH---HHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHhhC
Confidence 5543 4555799999995 99999999999999998764
No 30
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.2e-104 Score=831.77 Aligned_cols=416 Identities=27% Similarity=0.418 Sum_probs=381.0
Q ss_pred ccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCC-ceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCee
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDG-TMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g-~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~ 93 (488)
.++.+.+|+|++|.|++|+++|+. +++||+|+|...++ ....|||++|++++++++||++++||+. |++|.+||+++
T Consensus 13 ~~~~~~~G~v~~v~g~~v~~~g~~-~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~t~gl~~-G~~V~~tg~~~ 90 (434)
T PRK08472 13 FNLSPRFGSITKISPTIIEADGLN-PSVGDIVKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKI-GDKVFISKEGL 90 (434)
T ss_pred CCcceeeeEEEEEEccEEEEEecC-CCCCCEEEEecCCCCCceEEEEEEEeCCeEEEEEccCCCCCCC-CCEEEeCCCce
Confidence 577889999999999999999986 79999999954331 3478999999999999999999999996 99999999999
Q ss_pred eEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCCh
Q 011320 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (488)
Q Consensus 94 ~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GK 173 (488)
+||||++|||||+|++|||||+.+++....+++++++||+|++|.+++++|.||+++||.|+|+++|||++|||++|+||
T Consensus 91 ~v~vg~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GK 170 (434)
T PRK08472 91 NIPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGK 170 (434)
T ss_pred EEEcChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCH
Confidence 99999999999999999999999887767778999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhH
Q 011320 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERIIT 252 (488)
Q Consensus 174 t~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a 252 (488)
|+|+++|+++.. +| ++||++|||| +|..+|++..+.+ .+++|++|++|+|+||++|+++
T Consensus 171 StLl~~i~~~~~-------~~-----------v~vi~~iGergrev~e~~~~~l~~--~l~~tvvV~atsddsp~~R~~~ 230 (434)
T PRK08472 171 STLMGMIVKGCL-------AP-----------IKVVALIGERGREIPEFIEKNLGG--DLENTVIVVATSDDSPLMRKYG 230 (434)
T ss_pred HHHHHHHhhccC-------CC-----------EEEEEeeCccchhHHHHHHHHhcC--cccceEEEEECCCCCHHHhhHH
Confidence 999999998754 34 8999999999 6666777766643 3899999999999999999999
Q ss_pred HHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEE
Q 011320 253 PRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPIL 332 (488)
Q Consensus 253 ~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v 332 (488)
+++|+++||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.|++||||||+.+ ++||||+||+|
T Consensus 231 ~~~a~~iAEyFr-d~G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~-g~GSIT~~~tV 308 (434)
T PRK08472 231 AFCAMSVAEYFK-NQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEE-GKGSITAFFTV 308 (434)
T ss_pred HHHHHHHHHHHH-HcCCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCC-CCceeeEeEEE
Confidence 999999999999 8999999999999999999999999999999999999999999999999999964 38999999999
Q ss_pred eecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHH---HHHHHHcccc
Q 011320 333 TMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ---LYANYAIGKD 409 (488)
Q Consensus 333 ~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~---l~~~y~~~~~ 409 (488)
++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+++ ++|++++++ +++.|++.++
T Consensus 309 lv~gdD~~dpi~d~~~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e~e~ 383 (434)
T PRK08472 309 LVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDIIS-----PEHKLAARKFKRLYSLLKENEV 383 (434)
T ss_pred EecCCCCCCCchHHhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhcCC-----HHHHHHHHHHHHHHHhchhHHH
Confidence 99999999999999999999999999999999999999999999999998665 689999965 5666666677
Q ss_pred HHHHHHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011320 410 VQAMKAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 410 l~~~~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
++++|+|. |.| ++.+.++.++++|+ +||+|+.+++.+++++++.+.++++
T Consensus 384 li~~G~y~~g~d---~~~d~ai~~~~~i~-~fL~Q~~~~~~~~~~~~~~l~~~~~ 434 (434)
T PRK08472 384 LIRIGAYQKGND---KELDEAISKKEFME-QFLKQNPNELFPFEQTFEQLEEILR 434 (434)
T ss_pred HHHhhCccCCCC---HHHHHHHHhHHHHH-HHhCCCCCCCCCHHHHHHHHHHHhC
Confidence 77777775 654 46667899999996 9999999999999999999998863
No 31
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=1.3e-103 Score=825.05 Aligned_cols=408 Identities=28% Similarity=0.467 Sum_probs=374.4
Q ss_pred eEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecCccc
Q 011320 22 RTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDM 101 (488)
Q Consensus 22 G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG~~l 101 (488)
|+|++|.|++|+++|. .+++||+|.|...++..+.|||++|+++.+.+++|+++.||+. |++|.+||++++||+|++|
T Consensus 1 G~V~~i~G~~i~v~~~-~~~ige~~~i~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~-G~~V~~tg~~~~vpvg~~l 78 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP-KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGP-GSLVIATGRPLAIKVGKGL 78 (413)
T ss_pred CeEEEEECCEEEEEeC-CCCcCCEEEEEeCCCCeEEEEEEEEcCCeEEEEEccCccCCCC-CCEEEEcCCeeEEEcchhh
Confidence 8999999999999987 5799999999644445578999999999999999999999996 9999999999999999999
Q ss_pred cceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHHHHHH
Q 011320 102 LGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 102 LGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
||||+|++|+|||+.+++....++|+++.||+|++|.+++++|.||+++||.++|+++|||++|||++|+|||+|+++|+
T Consensus 79 LGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i~ 158 (413)
T TIGR03497 79 LGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIA 158 (413)
T ss_pred cCCEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 99999999999999988777778899999999999999999999999999999999999999999999999999999998
Q ss_pred HHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHH
Q 011320 182 RQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTA 260 (488)
Q Consensus 182 ~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiA 260 (488)
++.. .| ..|+++|||| +|+.+|+++.+.+++ ++||++|++|+|+||.+|++++|+|+|+|
T Consensus 159 ~~~~-------~~-----------~gvi~~~Ger~~ev~e~~~~~l~~~~-~~~~v~v~~tsd~~~~~r~~~~~~a~tiA 219 (413)
T TIGR03497 159 RNAK-------AD-----------INVIALIGERGREVRDFIEKDLGEEG-LKRSVVVVATSDQPALMRLKAAFTATAIA 219 (413)
T ss_pred CCCC-------CC-----------eEEEEEEccchHHHHHHHHHHhcccc-cceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 7653 23 7899999999 677788877788877 99999999999999999999999999999
Q ss_pred HHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCCCC
Q 011320 261 EYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDIT 340 (488)
Q Consensus 261 Eyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD~~ 340 (488)
|||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+ +++||||+||+|++|+||++
T Consensus 220 Eyfr-~~G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~--~~~GSIT~~~tVl~~gdD~~ 296 (413)
T TIGR03497 220 EYFR-DQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGN--SQKGSITGFYTVLVDGDDMN 296 (413)
T ss_pred HHHH-HCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcC--CCCcceeEEEEEEccCCCCC
Confidence 9999 89999999999999999999999999999999999999999999999999998 45899999999999999999
Q ss_pred CCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHH---HHHHHccccHHHHHHHh
Q 011320 341 HPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQL---YANYAIGKDVQAMKAVV 417 (488)
Q Consensus 341 dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l---~~~y~~~~~l~~~~~~~ 417 (488)
|||+|+++||+||||+|||+||++||||||||+.|+||+|+.++ +++|+++++++ ++.|++.+++++++.|.
T Consensus 297 dpi~~~~~si~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~~-----~~~~~~~a~~~r~~l~~y~e~~~li~~g~~~ 371 (413)
T TIGR03497 297 EPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEIV-----SEEHKELAGKLRELLAVYKEAEDLINIGAYK 371 (413)
T ss_pred CcchhhccccccEEEEECHHHHhCCCCCccCCccccccCccccC-----CHHHHHHHHHHHHHHHhhHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999999999754 47999999765 55555556666666665
Q ss_pred -CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q 011320 418 -GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLL 462 (488)
Q Consensus 418 -G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~ 462 (488)
|. +++.++++.++++++ +||+|+.+++.+++++++.+.+++
T Consensus 372 ~g~---d~~~~~~i~~~~~i~-~fl~Q~~~~~~~~~~~~~~l~~~~ 413 (413)
T TIGR03497 372 RGS---NPKIDEAIRYIEKIN-SFLKQGIDEKFTFEETVQLLKTLF 413 (413)
T ss_pred cCC---CHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHhhC
Confidence 55 445777899999996 999999999999999999998763
No 32
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=4.1e-103 Score=821.29 Aligned_cols=414 Identities=22% Similarity=0.329 Sum_probs=377.5
Q ss_pred ccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeee
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLK 94 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~ 94 (488)
+++.+.+|+|++|.|++|+++|+. +++||+|+|...++..+.|||++|+++++++|||++++||+. |++|.+++++++
T Consensus 14 ~~~~~~~g~v~~v~g~~i~~~g~~-~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-G~~V~~~~~~~~ 91 (434)
T PRK05922 14 WQPYRECGLLSRVSGNLLEAQGLS-ACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVAL-GAEVLPLRRPPS 91 (434)
T ss_pred CCcceeeeEEEEEEccEEEEEeCC-CCCCCEEEEecCCCCeeEEEEEEEeCCeEEEEEccCCCCCCC-CCEEEeCCCCcE
Confidence 467789999999999999999986 689999999643333478999999999999999999999996 999999999999
Q ss_pred EecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChh
Q 011320 95 TPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHN 174 (488)
Q Consensus 95 VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt 174 (488)
||+|++|||||+|++|+|||+.+++....++|+++.||+|++|.++++||+||||+||+|+|+++|||++|||++|+|||
T Consensus 92 v~vg~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKS 171 (434)
T PRK05922 92 LHLSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKS 171 (434)
T ss_pred EEcChhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChH
Confidence 99999999999999999999998887777789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHH
Q 011320 175 EIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERIITP 253 (488)
Q Consensus 175 ~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~ 253 (488)
||+++|+++.. +| ++||++|||+ ++..+|+ +.+.+...+++|++|++|+|+||.+|++++
T Consensus 172 TLL~~Ia~~~~-------~d-----------~gvi~liGerg~ev~eyl-~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 172 SLLSTIAKGSK-------ST-----------INVIALIGERGREVREYI-EQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred HHHHHHhccCC-------CC-----------ceEEEEeCCCCchHHHHH-HHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 99999988753 33 8999999998 5554544 444455568999999999999999999999
Q ss_pred HHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEe
Q 011320 254 RIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILT 333 (488)
Q Consensus 254 ~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~ 333 (488)
|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.|++||||||+ .++||||+||+|+
T Consensus 233 ~~a~tiAEyfr-d~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~--~~~GSIT~~~tVl 309 (434)
T PRK05922 233 RAAMTIAEYFR-DQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGN--NDKGSITALYAIL 309 (434)
T ss_pred HHHHHHHHHHH-HcCCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcC--CCCcceeEEEEEE
Confidence 99999999999 99999999999999999999999999999999999999999999999999998 3589999999999
Q ss_pred ecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHH---HHHHHHHccccH
Q 011320 334 MPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSN---QLYANYAIGKDV 410 (488)
Q Consensus 334 ~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~---~l~~~y~~~~~l 410 (488)
+++| ++|||+|+++|||||||||||+|++++ |||||++.|+||+|++++. ++|++++. ++++.|++.+++
T Consensus 310 ~~~~-~~dpi~d~~rsilDGhIvLsr~la~~~-~PAIDvl~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e~edl 382 (434)
T PRK05922 310 HYPN-HPDIFTDYLKSLLDGHFFLTPQGKALA-SPPIDILTSLSRSARQLAL-----PHHYAAAEELRSLLKAYHEALDI 382 (434)
T ss_pred ecCC-CCCccccchhhhcCcEEEEcHHHHhCC-CCCcCCccccccCCccccC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 899999999999999999999999987 9999999999999998553 79999995 567778888888
Q ss_pred HHHHHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011320 411 QAMKAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 411 ~~~~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
+++++|. |.| ++.+++++..+.++ +||+|++.+..+++++++.+.++++
T Consensus 383 i~~G~y~~g~d---~~~d~a~~~~~~i~-~fl~Q~~~~~~~~~~~~~~l~~~~~ 432 (434)
T PRK05922 383 IQLGAYVPGQD---AHLDRAVKLLPSIK-QFLSQPLSSYCALHNTLKQLEALLK 432 (434)
T ss_pred HHhcCCCccCC---HHHHHHHHhHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHh
Confidence 8888885 664 55667788899996 9999999999999999999999875
No 33
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=7.4e-103 Score=818.93 Aligned_cols=414 Identities=23% Similarity=0.366 Sum_probs=372.3
Q ss_pred ccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCC-CceeE--EEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCee
Q 011320 17 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGD-GTMRR--GQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (488)
Q Consensus 17 ~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~-g~~~~--geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~ 93 (488)
..+.+|+|++|.|+++++++. .+++||+|+|+..+ +..+. |||++|+++++++|||+++.|++. |++|..+|+++
T Consensus 3 ~~~~~g~v~~i~g~~i~~~~~-~~~~ge~~~i~~~~~~~~~~~~~evv~~~~~~~~l~~~~~~~gi~~-g~~v~~~~~~~ 80 (428)
T PRK08149 3 LLQRLAHPLRIQGPIIEAELP-DVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSR-QVVLKPTGKPL 80 (428)
T ss_pred ceeeeeEEEEEEeeEEEEEEC-CCCcCCEEEEeecCCCCceeeEEEEEEeeCcEEEEEECCCccCCCC-CCEEEEcCCcC
Confidence 567899999999999999965 68999999995431 11244 899999999999999999999995 99999999999
Q ss_pred eEecCccccceEecCCCcccCCCC--CCC--CCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCC
Q 011320 94 KTPVSLDMLGRIFNGSGKPIDNGP--PIL--PEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAA 169 (488)
Q Consensus 94 ~VpvG~~lLGRVlD~lG~PlDg~~--~~~--~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~ 169 (488)
+||+|++|||||+|++|+|||+.+ +.. ...++++++.||+|++|.++++||.||+++||.++|+++|||++|||++
T Consensus 81 ~v~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~s 160 (428)
T PRK08149 81 SVWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASA 160 (428)
T ss_pred EEEeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCC
Confidence 999999999999999999999986 332 2567899999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHH
Q 011320 170 GLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIER 249 (488)
Q Consensus 170 G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r 249 (488)
|+|||||+++|+++.. +| ++|+++||+|.+++.++.+++.+.+.++|+++|++|+|+||.+|
T Consensus 161 G~GKTTLl~~i~~~~~-------~d-----------v~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r 222 (428)
T PRK08149 161 GCGKTSLMNMLIEHSE-------AD-----------VFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDR 222 (428)
T ss_pred CCChhHHHHHHhcCCC-------CC-----------eEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHH
Confidence 9999999999988754 34 78899999997777667777777778999999999999999999
Q ss_pred HhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEE
Q 011320 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQI 329 (488)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i 329 (488)
++++|+|+|+||||| |+||||||++||+||||+|+||||+++||||+++|||||+|+.||+|+||||+. .+||||+|
T Consensus 223 ~~a~~~a~tiAE~fr-~~G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~--~~GSIT~~ 299 (428)
T PRK08149 223 CNAALVATTVAEYFR-DQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGAT--LAGSITAF 299 (428)
T ss_pred HhHHHHHHHHHHHHH-HcCCCEEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCC--CCCCceEE
Confidence 999999999999999 899999999999999999999999999999999999999999999999999986 37999999
Q ss_pred eEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHcccc
Q 011320 330 PILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKD 409 (488)
Q Consensus 330 ~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~ 409 (488)
|+|++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.++ +++|++++++++..|+++++
T Consensus 300 ~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~~-----~~~~~~~a~~~r~~l~~y~e 374 (428)
T PRK08149 300 YTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQVT-----DPKHRQLAAAFRKLLTRLEE 374 (428)
T ss_pred EEEEecCCCCCCCchhhhheeccEEEEEcHHHHhCCCCCcccCccccccchhhhc-----CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999754 47999999876655555555
Q ss_pred HHHH---HHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q 011320 410 VQAM---KAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLL 462 (488)
Q Consensus 410 l~~~---~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~ 462 (488)
++++ |+|. |. +++.+.++.++++|+ +||+|+++++.+++++++.|.+++
T Consensus 375 ~e~li~~G~y~~g~---~~~~d~ai~~~~~i~-~fl~Q~~~~~~~~~~~~~~l~~~~ 427 (428)
T PRK08149 375 LQLFIDLGEYRRGE---NADNDRAMDKRPALE-AFLKQDVAEKSSFSDTLERLNEFA 427 (428)
T ss_pred HHHHHHcCCCCCCC---CHHHHHHHHhHHHHH-HHhCCCCCCCCCHHHHHHHHHHHh
Confidence 5555 4442 44 456666799999996 999999999999999999998875
No 34
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=1.3e-102 Score=818.07 Aligned_cols=410 Identities=23% Similarity=0.370 Sum_probs=371.2
Q ss_pred cccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeE
Q 011320 16 EVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKT 95 (488)
Q Consensus 16 ~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~V 95 (488)
++.+.+|+|++|.|+++++.+ ..+++||+|+|.. ++ ..|||++|++++++++||++++||+. |++|.+||++++|
T Consensus 17 ~~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~-~~--~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~V~~tg~~~~v 91 (433)
T PRK07594 17 DGYCRWGRIQDVSATLLNAWL-PGVFMGELCCIKP-GE--ELAEVVGINGSKALLSPFTSTIGLHC-GQQVMALRRRHQV 91 (433)
T ss_pred CccceeeEEEEEECCEEEEEE-CCcCCCCEEEEec-CC--eEEEEEEEcCCeEEEEEccCCcCCCC-CCEEEeCCCccEE
Confidence 455688999999999999995 4789999999953 33 58999999999999999999999996 9999999999999
Q ss_pred ecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhH
Q 011320 96 PVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 175 (488)
Q Consensus 96 pvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~ 175 (488)
|||++|||||+|++|+|||+.++. ...++++++.+|+|++|..++++|.|||++||.|+|+++|||++|||++|+|||+
T Consensus 92 ~vg~~llGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKST 170 (433)
T PRK07594 92 PVGEALLGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKST 170 (433)
T ss_pred EeChhhccCEEcccCCCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCccH
Confidence 999999999999999999998773 4567799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHH-HHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHH
Q 011320 176 IAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETA-QFFKRDFEENGSMERVTLFLNLANDPTIERIITPR 254 (488)
Q Consensus 176 Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~-~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~ 254 (488)
|+++|+++.. +| .+||++||||.+++ +|+.+. .+.+.++||++|++++|+|+.+|++++|
T Consensus 171 LL~~I~~~~~-------~d-----------~~vi~~iGeRgrEv~efl~~~-~~~~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 171 LLAMLCNAPD-------AD-----------SNVLVLIGERGREVREFIDFT-LSEETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred HHHHhcCCCC-------CC-----------EEEEEEECCCchHHHHHHHHh-hccCCcceEEEEEECCCCCHHHHHHHHH
Confidence 9999977643 33 78999999995445 666554 4556799999999999999999999999
Q ss_pred HHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEee
Q 011320 255 IALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTM 334 (488)
Q Consensus 255 ~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~ 334 (488)
+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+|+||||. +++||||+||+|++
T Consensus 232 ~a~tiAEyfr-d~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~--~~~GSIT~~~tVl~ 308 (433)
T PRK07594 232 VATTIAEFFR-DNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGM--GEKGSITAFYTVLV 308 (433)
T ss_pred HHHHHHHHHH-HCCCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcC--CCCcchheeeeeee
Confidence 9999999999 89999999999999999999999999999999999999999999999999996 46899999999999
Q ss_pred cCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHcc---ccHH
Q 011320 335 PNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIG---KDVQ 411 (488)
Q Consensus 335 ~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~---~~l~ 411 (488)
|+||++|||+|+++|||||||+|||+||++||||||||+.|+||+|+.++ +++|+++++++++.|+++ ++++
T Consensus 309 ~gdD~~dpi~d~~~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~~~~~-----~~~h~~~a~~~r~~la~y~e~e~li 383 (433)
T PRK07594 309 EGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVVT-----SHEHRQLAAILRRCLALYQEVELLI 383 (433)
T ss_pred cCCCCCCchHHHhhhhcceEEEEcHHHHhCCCCCccCCcccccccchhhC-----CHHHHHHHHHHHHHHHcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999754 479999998766666555 5555
Q ss_pred HHHHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q 011320 412 AMKAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLL 462 (488)
Q Consensus 412 ~~~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~ 462 (488)
++|+|. | .+++-+.++++.++|. +||+|+.+++.++++++..|.+++
T Consensus 384 ~~G~y~~g---~d~~~d~ai~~~~~i~-~fl~Q~~~~~~~~~~~~~~l~~~~ 431 (433)
T PRK07594 384 RIGEYQRG---VDTDTDKAIDTYPDIC-TFLRQSKDEVCGPELLIEKLHQIL 431 (433)
T ss_pred HhcCCCCC---CCHHHHHHHHhhHHHH-HHhCCCCCCCCCHHHHHHHHHHHh
Confidence 555554 5 4566677899999996 999999999999999999998875
No 35
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1e-102 Score=819.15 Aligned_cols=417 Identities=22% Similarity=0.345 Sum_probs=378.5
Q ss_pred ccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeee
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLK 94 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~ 94 (488)
.++.+.+|+|++|.|++|++.|+. +++||+|+|...+++.+.||||+|+++.+++|||++++|++. |++|.+||++++
T Consensus 12 ~~~~~~~G~v~~v~g~~~~~~~~~-~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~v~~~~~~~~ 89 (434)
T PRK07196 12 IHLARVAGRLVRVTGLLLESVGCR-LAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVLG-GARVFPSEQDGE 89 (434)
T ss_pred CCccceeeEEEEEEcCEEEEecCC-CCcCCEEEEEeCCCceEEEEEEEecCCEEEEEECCCccCCCC-CCEEEECCCccE
Confidence 467789999999999999999985 799999999644554588999999999999999999999995 999999999999
Q ss_pred EecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChh
Q 011320 95 TPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHN 174 (488)
Q Consensus 95 VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt 174 (488)
||||++|||||+|++|+|||+.+++.+...++++++||||++|.++++||+||+++||.++|+++|||++|||++|+|||
T Consensus 90 v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKS 169 (434)
T PRK07196 90 LLIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKS 169 (434)
T ss_pred EEcCccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCCcc
Confidence 99999999999999999999998877667779999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHH
Q 011320 175 EIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERIITP 253 (488)
Q Consensus 175 ~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~ 253 (488)
||+++|+++.. +| ++|+++||++ ++..+|..+.+.+.+ +.|++++++++|.|+.+|+.++
T Consensus 170 TLl~~I~g~~~-------~d-----------v~vig~IGerg~ev~ef~~~~l~~~g-l~rsvvv~~~~d~s~~~rl~a~ 230 (434)
T PRK07196 170 VLLGMITRYTQ-------AD-----------VVVVGLIGERGREVKEFIEHSLQAAG-MAKSVVVAAPADESPLMRIKAT 230 (434)
T ss_pred HHHHHHhcccC-------CC-----------eEEEEEEeeecHHHHHHHHHHhhhcc-cceEEEEEecCCCChhhhHHHH
Confidence 99999987653 23 7788999998 566666667787776 8999999999999999999999
Q ss_pred HHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEe
Q 011320 254 RIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILT 333 (488)
Q Consensus 254 ~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~ 333 (488)
++++++||||| ++|+||||+|||+||||+|+||||+++||||+++|||||+|+.|++|+||||+.+ ++||||+||+|+
T Consensus 231 e~a~~iAEyfr-~~g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~-~~GSIT~~~tVl 308 (434)
T PRK07196 231 ELCHAIATYYR-DKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSS-GNGTMTAIYTVL 308 (434)
T ss_pred HHHHHHHHHhh-hccCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCC-CCEEeeeeeEEE
Confidence 99999999999 8999999999999999999999999999999999999999999999999999874 379999999999
Q ss_pred ecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHH---HHccccH
Q 011320 334 MPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYAN---YAIGKDV 410 (488)
Q Consensus 334 ~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~---y~~~~~l 410 (488)
+|+||++|||+|+++|||||||+|||+||++||||||||+.|+||+|+.+++ ++|+++++++++. |++.+++
T Consensus 309 ~~~dD~~dpi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~~~~-----~~~~~~a~~~r~~~a~y~e~~~l 383 (434)
T PRK07196 309 AEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQVIG-----SQQAKAASLLKQCYADYMAIKPL 383 (434)
T ss_pred ccCCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhccC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998665 6899999765554 5555555
Q ss_pred HHHHHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011320 411 QAMKAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 411 ~~~~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
+++++|. |.|+++ +.++.+.++++ +||+|+++++.+++++++.|.+++.
T Consensus 384 i~~g~y~~g~d~~~---d~ai~~~~~i~-~fL~Q~~~e~~~~~~~~~~l~~~~~ 433 (434)
T PRK07196 384 IPLGGYVAGADPMA---DQAVHYYPAIT-QFLRQEVGHPALFSASVEQLTGMFP 433 (434)
T ss_pred HHhcCCCCCCCHHH---HHHHHhHHHHH-HHhCCCCCCCCCHHHHHHHHHHHhc
Confidence 5555554 766655 45689999995 8999999999999999999998863
No 36
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=8.5e-102 Score=783.58 Aligned_cols=457 Identities=67% Similarity=1.086 Sum_probs=445.0
Q ss_pred ccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 011320 17 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (488)
Q Consensus 17 ~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vp 96 (488)
..++|-+|++|+||++.|++.++++.||+++|..++|+...|+|+.++.+.+++|+|++|.|++..+..|.++|+++.||
T Consensus 3 ~~~~Y~~i~~i~Gplv~ve~~eg~~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~ 82 (463)
T COG1156 3 MVKEYTTISEIKGPLIIVEGVEGASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIP 82 (463)
T ss_pred ccceeeeEEEeccceEEEecccCCCcceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEe
Confidence 45789999999999999999999999999999999999899999999999999999999999999888899999999999
Q ss_pred cCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHH
Q 011320 97 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (488)
Q Consensus 97 vG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~L 176 (488)
++++||||+||++|+|||++|.+.+++..++++.|.||..|..+.++++|||++||+|+++.||||++||+++|..++.|
T Consensus 83 vs~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~L 162 (463)
T COG1156 83 VSEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNEL 162 (463)
T ss_pred ecHHhhhhhhcCCCCcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHH
Q 011320 177 AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (488)
Q Consensus 177 l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a 256 (488)
+.+||+|+.. + ...+.+.+||+++|-..+++.|+.+++.+.|+++|+++|.|.+|+|+.+|...|..|
T Consensus 163 aaqIarQA~v-------~-----~~~e~favVfaamGit~eea~fF~~~fe~tGal~r~vlflnlA~dp~vEri~tPr~a 230 (463)
T COG1156 163 AAQIARQATV-------D-----GEEEEFAVVFAAMGITHEEALFFMDEFEETGALDRAVLFLNLADDPAVERIITPRMA 230 (463)
T ss_pred HHHHHHhccc-------C-----CCccceeEEEeecCccHHHHHHHHHHHHhhhhhhhhHhhhhccCCCceeEecchhHH
Confidence 9999999862 2 123567999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecC
Q 011320 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPN 336 (488)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~ 336 (488)
+|.||||.+++++|||+++.|||.||+|+||||.+.+|.|+++|||+|||++|+.+|||||++.+++||||.+++.++|+
T Consensus 231 Lt~AEylA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~g~~GSiTqipIlTMP~ 310 (463)
T COG1156 231 LTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIRGRKGSITQIPILTMPG 310 (463)
T ss_pred HHHHHHHhccCCceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceeccCCCceEEEEeeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHH
Q 011320 337 DDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 416 (488)
Q Consensus 337 dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~ 416 (488)
||+||||||+|.+|++|||+|||+|..+|+||+||++.|+||+|+..+++..++++|.++++++++.|++.+++.++.++
T Consensus 311 DDITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~giG~g~TReDH~~~snql~a~YA~g~d~r~l~av 390 (463)
T COG1156 311 DDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHGDVSNQLYAAYAEGRDLRELVAV 390 (463)
T ss_pred CCcCCCCCcccceeccceEEEEhhcccCCcCCCccccccHHHHhhcccCCCccccccHHHHHHHHHHHhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhcccc
Q 011320 417 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRD 485 (488)
Q Consensus 417 ~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (488)
+|.+.||+.|++.++++..|++.|++|.+++..+++++|+..|++|+.+|+++|++|+.++|+|||++.
T Consensus 391 vge~aLs~~D~~~l~F~d~FE~~fi~qg~~enrsieetLdlgW~lL~~lp~~el~ri~~~~I~ky~p~~ 459 (463)
T COG1156 391 VGEEALSERDRKYLKFADLFEQRFIKQGRYENRSIEETLDLGWELLSILPESELTRIKPDLIDKYHPKY 459 (463)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhHHHHHhCCHhHhccCCHHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 37
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=1.8e-100 Score=805.16 Aligned_cols=414 Identities=28% Similarity=0.428 Sum_probs=374.4
Q ss_pred ccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 011320 17 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (488)
Q Consensus 17 ~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vp 96 (488)
+.+.+|+|++|.|+++++.+ ..+++||+|+|...++..+.|||++|+++++++++|++++||+. |++|.+||++++||
T Consensus 2 ~~~~~G~V~~v~g~~v~v~~-~~~~~ge~~~i~~~~~~~~~~eVi~~~~~~~~l~~~~~~~gl~~-G~~V~~tg~~~~v~ 79 (422)
T TIGR02546 2 PVRVRGRVTEVSGTLLKAVL-PGARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISP-GSEVIPTGRPLSIR 79 (422)
T ss_pred CcceeEEEEEEECcEEEEEE-CCCCCCCEEEEeeCCCCeEEEEEEEEcCCcEEEEEccCccCCCC-CCEEEECCCCceEE
Confidence 45789999999999999985 46899999999644344589999999999999999999999995 99999999999999
Q ss_pred cCccccceEecCCCcccCCCCCCCCCc--eeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChh
Q 011320 97 VSLDMLGRIFNGSGKPIDNGPPILPEA--YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHN 174 (488)
Q Consensus 97 vG~~lLGRVlD~lG~PlDg~~~~~~~~--~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt 174 (488)
||++|||||+|++|+|||+.+++.... ++|+++.||+|++|.++++||.||+++||.++|+++|||++|||++|+|||
T Consensus 80 vg~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKS 159 (422)
T TIGR02546 80 VGEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKS 159 (422)
T ss_pred eChhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChH
Confidence 999999999999999999998876663 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHH
Q 011320 175 EIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPR 254 (488)
Q Consensus 175 ~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~ 254 (488)
+|+.+|+++.. +| .+||++||++.+++.++.+...+.+.+++|++|++++++|+.+|++++|
T Consensus 160 tLl~~I~~~~~-------~~-----------~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~ 221 (422)
T TIGR02546 160 TLLGMIARGAS-------AD-----------VNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAY 221 (422)
T ss_pred HHHHHHhCCCC-------CC-----------EEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHH
Confidence 99999988653 33 8999999999655555555555556799999999999999999999999
Q ss_pred HHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEee
Q 011320 255 IALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTM 334 (488)
Q Consensus 255 ~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~ 334 (488)
+|+++||||| ++|+|||+++||+||||+|+||||+++||||+++||||++|+.||+||||||+ +++||||+||||++
T Consensus 222 ~a~~~AE~f~-~~g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~--~~~GSIT~~~tv~~ 298 (422)
T TIGR02546 222 TATAIAEYFR-DQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGN--GEKGSITALYTVLV 298 (422)
T ss_pred HHHHHHHHHH-HCCCcEEEEEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcC--CCCCceeEEEEEec
Confidence 9999999999 89999999999999999999999999999999999999999999999999998 45899999999999
Q ss_pred cCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHH
Q 011320 335 PNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMK 414 (488)
Q Consensus 335 ~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~ 414 (488)
|+||++|||+|+++||+||||+|||+||++||||||||+.|+||+++.++ +++|+++++++++.|+++++++++.
T Consensus 299 ~~dd~~~pi~~~~~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~~~~~-----~~~~~~~a~~~~~~l~~y~e~~~li 373 (422)
T TIGR02546 299 EGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMSQVV-----STEHRRAAGKLRRLLATYKEVELLI 373 (422)
T ss_pred cCCCCCCCchhhhhccccEEEEEcHHHHhCCCCCccCCccccccchhhhC-----CHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999754 4799999987766666666555555
Q ss_pred H---Hh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHH
Q 011320 415 A---VV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLL 462 (488)
Q Consensus 415 ~---~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~ 462 (488)
+ |. |.|+++ +.++.++++++ +||+|+++++.++++++..+|+++
T Consensus 374 ~~g~y~~g~d~~~---d~~i~~~~~i~-~fl~Q~~~~~~~~~~~~~~l~~~~ 421 (422)
T TIGR02546 374 RLGEYQPGSDPET---DDAIDKIDAIR-AFLRQSTDEYSPYEETLEQLHALV 421 (422)
T ss_pred HhcCCcCCCCHHH---HHHHHhHHHHH-HHhCCCCCCCCCHHHHHHHHHHHh
Confidence 5 43 766654 44688888886 999999999999999999999986
No 38
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=7.9e-100 Score=797.76 Aligned_cols=417 Identities=24% Similarity=0.367 Sum_probs=373.0
Q ss_pred ccccceeeEEEEEECCEEEEeccC-CCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCee
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVK-GPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~-~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~ 93 (488)
.++.+.+|+|++|.|.++++.|+. .+++||+|+|+..++ ...|||++|++++++++||+++.||+. |++|.. ++++
T Consensus 21 ~~~~~~~G~v~~v~g~~~~~~g~~~~~~iGe~~~i~~~~~-~~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~v~~-~~~~ 97 (450)
T PRK06002 21 EPLVRIGGTVSEVTASHYRVRGLSRFVRLGDFVAIRADGG-THLGEVVRVDPDGVTVKPFEPRIEIGL-GDAVFR-KGPL 97 (450)
T ss_pred cCccceeEEEEEEeceEEEEEcCccCCCCCCEEEEECCCC-cEEEEEEEEeCCeEEEEEccCCcCCCC-CCEEEe-CCCc
Confidence 467789999999999999999985 689999999964344 378999999999999999999999997 999999 6789
Q ss_pred eEecCccccceEecCCCcccCCCCCCCCCc-eeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCC
Q 011320 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEA-YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (488)
Q Consensus 94 ~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~-~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~G 172 (488)
++++|++|||||+|++|+|||+.+++...+ ++|+++.||+|++|..+++++.||+++||.|+||++|||++|||++|+|
T Consensus 98 ~v~vg~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsG 177 (450)
T PRK06002 98 RIRPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVG 177 (450)
T ss_pred eeecCcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCC
Confidence 999999999999999999999998876654 5799999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCch-HHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHh
Q 011320 173 HNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM-ETAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (488)
Q Consensus 173 Kt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~-e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~ 251 (488)
||||+.+|++... .| .++|+++|||. +..++..+.+.. .++|+++|++++|+||.+|++
T Consensus 178 KTTLL~~Ia~l~~-------pd-----------~gvv~liGergrev~e~~~~~l~~--~r~rtI~vV~qsd~~~~~r~~ 237 (450)
T PRK06002 178 KSTLLAMLARADA-------FD-----------TVVIALVGERGREVREFLEDTLAD--NLKKAVAVVATSDESPMMRRL 237 (450)
T ss_pred HHHHHHHHhCCCC-------CC-----------eeeeeecccCCccHHHHhHHHHHH--hhCCeEEEEEcCCCCHHHHHH
Confidence 9999999976542 23 78999999994 544555555553 388999999999999999999
Q ss_pred HHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeE
Q 011320 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPI 331 (488)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~ 331 (488)
++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.||+|+||||+...++||||+|||
T Consensus 238 ~~~~a~~iAEyfr-d~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~t 316 (450)
T PRK06002 238 APLTATAIAEYFR-DRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFS 316 (450)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEE
Confidence 9999999999999 899999999999999999999999999999999999999999999999999986445899999999
Q ss_pred EeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHH---HHHccc
Q 011320 332 LTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYA---NYAIGK 408 (488)
Q Consensus 332 v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~---~y~~~~ 408 (488)
|++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.++ +++|++++.++++ .|++.+
T Consensus 317 vl~~~dd~~dpI~d~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~-----~~~~~~~a~~~r~~la~y~e~e 391 (450)
T PRK06002 317 VLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHAW-----TPEQRKLVSRLKSMIARFEETR 391 (450)
T ss_pred EEecCCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccCccccccc-----CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999865 3789999976555 555555
Q ss_pred cHHHHHHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhc
Q 011320 409 DVQAMKAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIF 465 (488)
Q Consensus 409 ~l~~~~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~ 465 (488)
+++++++|. |.|+. .+.+++..++|. +||+|+.+++.+ ++++..|.++++.-
T Consensus 392 ~li~ig~y~~G~d~~---~D~ai~~~~~i~-~fL~Q~~~~~~~-~~~~~~l~~~~~~~ 444 (450)
T PRK06002 392 DLRLIGGYRAGSDPD---LDQAVDLVPRIY-EALRQSPGDPPS-DDAFADLAAALKGA 444 (450)
T ss_pred HHHHhhccccCCChH---HHHHHHhHHHHH-HHhCCCCCCCCC-HHHHHHHHHHHhhH
Confidence 566666664 66543 345688899996 899999999999 99999999998764
No 39
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=4e-99 Score=796.86 Aligned_cols=421 Identities=27% Similarity=0.414 Sum_probs=376.6
Q ss_pred cccCCccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCC-CceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEE
Q 011320 10 MEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGD-GTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQF 88 (488)
Q Consensus 10 ~~~~~~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~-g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~ 88 (488)
-|.+..++.+.+|+|++|.|+++++.+. .+++||+|+|..++ +..+.|||++|+++.+.++||++++||+. |++|.+
T Consensus 13 ~~~~~~~~~~~~G~v~~i~G~~v~~~~~-~~~~ge~~~i~~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~-G~~V~~ 90 (440)
T TIGR01026 13 CQEMDLRLVKRVGRVTKVKGLLIEAVGP-QASVGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRP-GSKVLA 90 (440)
T ss_pred HhhhcCCccceeeEEEEEEeeEEEEEcC-CCCcCCEEEEeecCCCCcEEEEEEEecCCEEEEEEccCCcCCCC-CCEEEe
Confidence 3566778899999999999999999875 57999999996321 22378999999999999999999999996 999999
Q ss_pred cCCeeeEecCccccceEecCCCcccCCCC-CCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEecc
Q 011320 89 TGEVLKTPVSLDMLGRIFNGSGKPIDNGP-PILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFS 167 (488)
Q Consensus 89 tg~~~~VpvG~~lLGRVlD~lG~PlDg~~-~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg 167 (488)
||++++||||++|||||+|++|||||+.+ ++.....+++++.||+|++|.+++++|.||+++||.++|+++|||++|||
T Consensus 91 tg~~~~v~vg~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G 170 (440)
T TIGR01026 91 TGEGLSIKVGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFA 170 (440)
T ss_pred CCCccEEEcChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEEC
Confidence 99999999999999999999999999988 55555567899999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHH-HhhccCCCcceEEEEEeCCCCCH
Q 011320 168 AAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFK-RDFEENGSMERVTLFLNLANDPT 246 (488)
Q Consensus 168 ~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~-~~l~~~~~~~~tvvv~~t~~~~~ 246 (488)
++|+|||+|+.+|+++.. +| +.|+++||+|.+++.++. +.+.++ .++||++|++++|+||
T Consensus 171 ~sG~GKStLl~~I~~~~~-------~~-----------~~vi~~iG~r~~ev~~~~~~~~~~~-~l~~tvvv~~~~d~~p 231 (440)
T TIGR01026 171 GSGVGKSTLLGMIARNTE-------AD-----------VNVIALIGERGREVREFIEHDLGEE-GLKRSVVVVATSDQSP 231 (440)
T ss_pred CCCCCHHHHHHHHhCCCC-------CC-----------EEEEEEEeecchHHHHHHHHHhccc-ccceEEEEEECCCCCH
Confidence 999999999999987643 33 789999999955555444 555554 5999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcce
Q 011320 247 IERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSI 326 (488)
Q Consensus 247 ~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSI 326 (488)
.+|++++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||. +++|||
T Consensus 232 ~~r~~~~~~a~t~AE~fr-d~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~--~~~GSI 308 (440)
T TIGR01026 232 LLRLKGAYVATAIAEYFR-DQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGA--SGKGSI 308 (440)
T ss_pred HHHHHHHHHHHHHHHHHH-HCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhcc--CCCCee
Confidence 999999999999999999 89999999999999999999999999999999999999999999999999996 458999
Q ss_pred eEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHc
Q 011320 327 TQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAI 406 (488)
Q Consensus 327 T~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~ 406 (488)
|+||||++++||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+++ ++|+++++++++.|++
T Consensus 309 T~i~tVl~~~~d~~dpi~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~ 383 (440)
T TIGR01026 309 TAFYTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAIVS-----EEHRRAARKFRELLSK 383 (440)
T ss_pred eEEEEEEccCcCCCcchhhhhccccceEEEEecchhhCCccCccCCCcccccCccccCC-----HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999997655 6999999877666666
Q ss_pred cccHHHHHHH---h-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011320 407 GKDVQAMKAV---V-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 407 ~~~l~~~~~~---~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
+++++++.++ . |.| ++.+.++.+.++|+ .||+|+++++.+++++++.+.++++
T Consensus 384 y~e~~~li~ig~y~~g~d---~~~d~~i~~~~~i~-~fL~Q~~~~~~~~~~~~~~l~~~~~ 440 (440)
T TIGR01026 384 YKDNEDLIRIGAYQRGSD---RELDFAIAKYPKLE-RFLKQGINEKVNFEESLQQLEEIFR 440 (440)
T ss_pred hHHHHHHHHhhccccCCC---HHHHHHHHHHHHHH-HHcCCCCCCCCCHHHHHHHHHHhhC
Confidence 6666655554 2 544 45555688889995 9999999999999999999998863
No 40
>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion]
Probab=100.00 E-value=1.4e-98 Score=733.11 Aligned_cols=480 Identities=83% Similarity=1.267 Sum_probs=464.6
Q ss_pred CCCcccccCCccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCC
Q 011320 5 QNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFT 84 (488)
Q Consensus 5 ~~~~~~~~~~~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~ 84 (488)
+...-++.|...+...|-+|..|+||+|....++.+...|+|.+.-++|....|+|+++.++++++|+|++|+|+..+-+
T Consensus 8 ~~~a~~~~~~~~prl~y~tv~gvngplvild~vkfp~y~eiv~ltlpdgt~r~gqvlev~g~kavvqvfegtsgid~k~t 87 (489)
T KOG1351|consen 8 HATAVIENYTTEPRLTYRTVSGVNGPLVILDKVKFPKYAEIVNLTLPDGSVRSGQVLEVSGEKAVVQVFEGTSGIDAKKT 87 (489)
T ss_pred HHHHHHhccccCCceeEeeecccCCceEEEecccccchhhheEEecCCCCeecceEEEecCCeeEEEEeccccccccccc
Confidence 34445788999999999999999999999999999999999999889999889999999999999999999999988899
Q ss_pred EEEEcCCeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEE
Q 011320 85 TVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIP 164 (488)
Q Consensus 85 ~V~~tg~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~g 164 (488)
.|.+||+.++.||++++||||||+.|+|||++|++.++++..++|.|+||..|..+.|+++|||.+||.|+.|.||||++
T Consensus 88 ~~eftg~~lr~pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkip 167 (489)
T KOG1351|consen 88 TVEFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIP 167 (489)
T ss_pred eEEEecccccccccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCC
Q 011320 165 LFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLAND 244 (488)
Q Consensus 165 Ifg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~ 244 (488)
||+.+|.+++.+.++|+||+|... ..++| +++.+.+++.+||+++|-..|.+.|+++.+.+.|.|+++++|.+-+++
T Consensus 168 ifsaaglphneiaaqicrqaglvk-~~~k~--~~d~~~dnfaivfaamgvnmetarffk~dfeengsm~~v~lflnland 244 (489)
T KOG1351|consen 168 IFSAAGLPHNEIAAQICRQAGLVK-RPEKD--VHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAND 244 (489)
T ss_pred eeecCCCChhHHHHHHHHhcCccc-cCCcc--cccccccceeeeehhhcccHHHHHHHHhhHHhcCCccceEEEEecCCC
Confidence 999999999999999999999766 23445 667778899999999999999999999999999999999999999999
Q ss_pred CHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCc
Q 011320 245 PTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKG 324 (488)
Q Consensus 245 ~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~G 324 (488)
|..+|...|..|+|.|||+.++.+||||+++.|++.||+|+||+|.+..|.|+++|||+|||.+|+.+|||||++++++|
T Consensus 245 ptieriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdlatiyeragrvegr~g 324 (489)
T KOG1351|consen 245 PTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNG 324 (489)
T ss_pred CchhhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHHHHHHHhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHH
Q 011320 325 SITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANY 404 (488)
Q Consensus 325 SIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y 404 (488)
|||.++++++|.||+++||||.|.+|++|||+.||+|+++.+||+||+|.|+||+|..++|+.+++.+|.++.+++++.|
T Consensus 325 sitqipiltmpnddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksaigegmtr~dh~dvsnqlya~y 404 (489)
T KOG1351|consen 325 SITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACY 404 (489)
T ss_pred ceeeeeeEecCCcccCCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHHhcCCcccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchhhhcCCChhhHhhhccc
Q 011320 405 AIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 484 (488)
Q Consensus 405 ~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (488)
+-.+|.+.+.+.+|.++||.+|.+++++..+|++.|+.|..++..++.|+|+..|.+|+.||++.|+|||++++++||++
T Consensus 405 aigkdvqamkavvgeeals~ed~l~lefl~kfek~fi~qg~yenrtvfesldi~w~llrifpreml~rip~~~ld~~y~r 484 (489)
T KOG1351|consen 405 AIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFEKNFISQGAYENRTVFESLDIAWQLLRIFPREMLKRIPAKTLDEFYSR 484 (489)
T ss_pred HhcchHHHHHHHhcccccChhhhHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHhHHHHHhhccHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 011320 485 DAA 487 (488)
Q Consensus 485 ~~~ 487 (488)
+..
T Consensus 485 ~~~ 487 (489)
T KOG1351|consen 485 DST 487 (489)
T ss_pred ccc
Confidence 654
No 41
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=8.2e-96 Score=771.28 Aligned_cols=417 Identities=25% Similarity=0.416 Sum_probs=377.8
Q ss_pred ccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCc--eeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCe
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGT--MRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEV 92 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~--~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~ 92 (488)
.+..+.+|+|++|.|++|++++. .+++||+|+|...++. .+.|||++|++++++++||++++||+. |++|.+||++
T Consensus 13 ~~~~~~~G~v~~i~G~~i~~~~~-~~~ige~~~i~~~~~~~~~~~~EVi~~~~~~~~l~~~~~~~gl~~-g~~V~~tg~~ 90 (438)
T PRK07721 13 LDPYKRYGKVSRVIGLMIESKGP-ESSIGDVCYIHTKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAP-GCLVEATGKP 90 (438)
T ss_pred CCccceecEEEEEECcEEEEEEC-CCCchheEEEEecCCCCceEEEEEEEEcCCEEEEEEccCccCCCC-CCEEEECCCc
Confidence 46778999999999999999976 5799999999643222 478999999999999999999999996 9999999999
Q ss_pred eeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCC
Q 011320 93 LKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (488)
Q Consensus 93 ~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~G 172 (488)
++||||++|||||+|++|+|||+.+......++++++.||+|++|.+++++|.||+++||.++++++||+++|+|++|+|
T Consensus 91 ~~v~vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~G 170 (438)
T PRK07721 91 LEVKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVG 170 (438)
T ss_pred cEEEechhhcCCEECcCCCccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCC
Confidence 99999999999999999999999875444456799999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHh
Q 011320 173 HNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (488)
Q Consensus 173 Kt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~ 251 (488)
||+|+++|+++.. ++ ..+++++||| +|+.+|+++.+...+ ++|+++|++|+|+||.+|++
T Consensus 171 KStLl~~I~~~~~-------~~-----------~gvI~~~Gerg~ev~e~~~~~l~~~~-l~r~v~vv~~~~~~~~~r~~ 231 (438)
T PRK07721 171 KSTLMGMIARNTS-------AD-----------LNVIALIGERGREVREFIERDLGPEG-LKRSIVVVATSDQPALMRIK 231 (438)
T ss_pred HHHHHHHHhcccC-------CC-----------eEEEEEEecCCccHHHHHHhhcChhh-hcCeEEEEECCCCCHHHHHH
Confidence 9999999987643 23 6789999999 566677777677766 99999999999999999999
Q ss_pred HHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeE
Q 011320 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPI 331 (488)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~ 331 (488)
++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||+++ ..+||||+|+|
T Consensus 232 ~~~~a~~iAEyfr-~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~--~~~GsIT~~~T 308 (438)
T PRK07721 232 GAYTATAIAEYFR-DQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGT--NASGSITAFYT 308 (438)
T ss_pred HHHHHHHHHHHHH-HCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcC--CCCCCeeeEEE
Confidence 9999999999999 89999999999999999999999999999999999999999999999999986 34799999999
Q ss_pred EeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHH---HHHHHHHccc
Q 011320 332 LTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSN---QLYANYAIGK 408 (488)
Q Consensus 332 v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~---~l~~~y~~~~ 408 (488)
|+++++|++||++|++++|+||||+||++|+++||||||||+.|+||+|+.++ +++|+++++ ++++.|++.+
T Consensus 309 Vlv~~hdm~e~i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~~~~~-----~~~~~~~a~~~r~~l~~y~e~~ 383 (438)
T PRK07721 309 VLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHIV-----SPEHKEAANRFRELLSTYQNSE 383 (438)
T ss_pred EEEECCCCCchhhhhEEEecCEEEEEeccHHHCCCCCccCCcccccccccccC-----CHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999755 479999997 5566777777
Q ss_pred cHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011320 409 DVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 409 ~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
+++++++|.+. .+++.+.+++++++|+ .||+|+++++.+++++++.+|++++
T Consensus 384 ~li~~g~y~~g--~~~~~d~a~~~~~~~~-~fl~Q~~~~~~~~~~~~~~l~~~~~ 435 (438)
T PRK07721 384 DLINIGAYKRG--SSREIDEAIQFYPQII-SFLKQGTDEKATFEESIQALLSLFG 435 (438)
T ss_pred HHHHhhCCcCC--CCHHHHHHHHhHHHHH-HHhCCCCCCCCCHHHHHHHHHHHHh
Confidence 77777777631 2456667799999995 9999999999999999999999985
No 42
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.2e-95 Score=765.32 Aligned_cols=411 Identities=23% Similarity=0.399 Sum_probs=375.4
Q ss_pred CccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCee
Q 011320 14 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVL 93 (488)
Q Consensus 14 ~~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~ 93 (488)
..++.+.+|+|++|.|.++++.|+ .+++||+|+|. ++ ...|||++|+++.+.++||++++||+. |++|.+||+++
T Consensus 15 ~~~~~~~~g~v~~~~g~~~~~~g~-~~~ige~~~i~--~~-~~~~eV~~~~~~~~~~~~~~~~~gi~~-g~~v~~~~~~~ 89 (432)
T PRK06793 15 ETPFYTKVGKVHSVQEQFFVAKGP-KAKIGDVCFVG--EH-NVLCEVIAIEKENNMLLPFEQTEKVCY-GDSVTLIAEDV 89 (432)
T ss_pred cCCccceeeEEEEEEEEEEEEEcC-CCCcCCEEEEC--CC-CEEEEEEEecCCcEEEEEccCccCCCC-CCEEEECCCcc
Confidence 456778999999999999999986 68999999992 33 368999999999999999999999996 99999999999
Q ss_pred eEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCCh
Q 011320 94 KTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (488)
Q Consensus 94 ~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GK 173 (488)
+||||++|||||+|++|+|||+.+++....+++++++||+|++|..+++++.||+++||.++|+++|||++|||++|+||
T Consensus 90 ~v~vg~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GK 169 (432)
T PRK06793 90 VIPRGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGK 169 (432)
T ss_pred EEEcCHhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCCh
Confidence 99999999999999999999998776666678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhH
Q 011320 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERIIT 252 (488)
Q Consensus 174 t~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a 252 (488)
|+|+.+|+++.. +| ..++++|||| +|+.+|+++.+++++ ++||++|++|+|+|+++|+++
T Consensus 170 TtLl~~Ia~~~~-------~~-----------~gvI~~iGerg~ev~e~~~~~l~~~g-l~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 170 STLLGMIAKNAK-------AD-----------INVISLVGERGREVKDFIRKELGEEG-MRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred HHHHHHHhccCC-------CC-----------eEEEEeCCCCcccHHHHHHHHhhhcc-cceeEEEEECCCCCHHHHHHH
Confidence 999999988753 23 6788999999 788888888898888 999999999999999999999
Q ss_pred HHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEE
Q 011320 253 PRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPIL 332 (488)
Q Consensus 253 ~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v 332 (488)
+++|+++||||| |+|+|||+++||+||||+|+|||++++||||+. |||+++|+.|++|+||||+. ++||||++|+|
T Consensus 231 ~~~a~~iAEyfr-~~G~~VLlilDslTr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~~--~~GSiT~~~tv 306 (432)
T PRK06793 231 AKLATSIAEYFR-DQGNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKT--QKGSITGIYTV 306 (432)
T ss_pred HHHHHHHHHHHH-HcCCcEEEEecchHHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhccC--CCcceEEEEEE
Confidence 999999999999 899999999999999999999999999999996 99999999999999999985 48999999999
Q ss_pred eecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHH---HHHHHcccc
Q 011320 333 TMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQL---YANYAIGKD 409 (488)
Q Consensus 333 ~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l---~~~y~~~~~ 409 (488)
++|+||++|||+|+++||+||||+|||+||++||||||||+.|+||+|+.+++ ++|+++++++ ++.|++.++
T Consensus 307 lv~~dD~~dpI~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~~~-----~~~~~~a~~~r~~la~y~e~e~ 381 (432)
T PRK06793 307 LVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEIVS-----PNHWQLANEMRKILSIYKENEL 381 (432)
T ss_pred EecCCCCCCcchHHhhhhcceEEEEcHHHHhCCCCCccCCCcccCcCccccCC-----HHHHHHHHHHHHHHHhChHHHH
Confidence 99999999999999999999999999999999999999999999999997654 7899999755 555555566
Q ss_pred HHHHHHHh-CCcCCCHHHHHHHH-HHhHHHHHHhccCCCCCCCHHHHHHHHHHH
Q 011320 410 VQAMKAVV-GEEALSSEDLLYLE-FLDKFERKFVAQGAYDSRNIFQSLDLAWTL 461 (488)
Q Consensus 410 l~~~~~~~-G~d~l~~~~~~~l~-~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~ 461 (488)
++++++|. |. +++.++++. +.+++. .||+|+.+++.+++++++.|.++
T Consensus 382 ~i~~g~y~~g~---~~~~d~ai~~~~~~i~-~fl~Q~~~~~~~~~~~~~~l~~~ 431 (432)
T PRK06793 382 YFKLGTIQENA---ENAYIFECKNKVEGIN-TFLKQGRSDSFQFDDIVEAMHHI 431 (432)
T ss_pred HHHhCCccCCC---CHHHHHHHHHhHHHHH-HHhCCCCCCCCCHHHHHHHHHhh
Confidence 66666665 44 556667788 999995 99999999999999999999875
No 43
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=3e-95 Score=764.20 Aligned_cols=417 Identities=25% Similarity=0.413 Sum_probs=378.1
Q ss_pred ccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeee
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLK 94 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~ 94 (488)
.++.+.+|+|++|.|+++++.|. .+++||+|.|...++..+.|||++|+++.+.++||+++.|++. |++|.+||++++
T Consensus 18 ~~~~~~~G~v~~i~g~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~-g~~V~~~g~~~~ 95 (442)
T PRK06315 18 VQLTTVVGRITEVVGMLIKAVVP-DVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSP-SSEVIPTGLPLH 95 (442)
T ss_pred CCcceeccEEEEEECCEEEEEEC-CcccCCEEEEecCCCCEEEEEEEEEcCCeEEEEEccCCcCCCC-CCEEEeCCCccE
Confidence 46778999999999999999986 4699999999643333579999999999999999999999996 999999999999
Q ss_pred EecCccccceEecCCCcccCC--CCCCC-CCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCC
Q 011320 95 TPVSLDMLGRIFNGSGKPIDN--GPPIL-PEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 171 (488)
Q Consensus 95 VpvG~~lLGRVlD~lG~PlDg--~~~~~-~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~ 171 (488)
||||++|||||+|++|+|||+ .+++. ...++|+++.||+|++|.++++||+||||+||.++|+++|||++|||++|+
T Consensus 96 v~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~ 175 (442)
T PRK06315 96 IRAGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGV 175 (442)
T ss_pred EEecccccCCEEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCCCC
Confidence 999999999999999999998 66654 446679999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHH
Q 011320 172 PHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFEENGSMERVTLFLNLANDPTIERI 250 (488)
Q Consensus 172 GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~ 250 (488)
|||+|+.+|+++... +| ..|+++|||| +|+.++..+.+.+.+ ++++++|++||+++|..|+
T Consensus 176 GKStLl~~I~~~~~~------~~-----------~~vi~liGerg~ev~~~~~~~l~~~g-~~~svvvvats~q~p~~rl 237 (442)
T PRK06315 176 GKSSLLGMIARNAEE------AD-----------VNVIALIGERGREVREFIEGDLGEEG-MKRSVIVVSTSDQSSQLRL 237 (442)
T ss_pred CcchHHHHhhccccc------CC-----------ceEEEEECCCchHHHHHHHHHHHhcC-CceEEEEEeCCCCCHHHHh
Confidence 999999999876421 22 5789999998 566677777788766 8999999999999999999
Q ss_pred hHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEe
Q 011320 251 ITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIP 330 (488)
Q Consensus 251 ~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~ 330 (488)
.++++|+++||||| ++|++||+++||+||||+|+|||++++||||.++||||++||.||+|+||||+. .+||||+||
T Consensus 238 np~~va~~IAE~~r-~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~--~~GSITai~ 314 (442)
T PRK06315 238 NAAYVGTAIAEYFR-DQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGAS--DKGTITAFY 314 (442)
T ss_pred hHHHHHHHHHHHHH-HcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCC--CCcceeeeE
Confidence 99999999999999 899999999999999999999999999999999999999999999999999984 489999999
Q ss_pred EEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHH---HHHHHHcc
Q 011320 331 ILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQ---LYANYAIG 407 (488)
Q Consensus 331 ~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~---l~~~y~~~ 407 (488)
||++++||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+++ ++|++++++ +++.|++.
T Consensus 315 tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e~ 389 (442)
T PRK06315 315 TVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAIVP-----EEQRRIIGKAREVLAKYKAN 389 (442)
T ss_pred EEEecCCCCCcccHHHhhhhcceEEEEeccHHHcCCCCCccchhhhcccchhcCC-----HHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999997554 689999975 56666666
Q ss_pred ccHHHHHHHh-CCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011320 408 KDVQAMKAVV-GEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 408 ~~l~~~~~~~-G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
++++++++|. | .+++.++++.++++++ +||+|+.+++.+++++++.|.++++
T Consensus 390 e~li~~g~y~~g---~d~~~d~ai~~~~~i~-~fL~Q~~~e~~~~~~~~~~l~~~~~ 442 (442)
T PRK06315 390 EMLIRIGEYRRG---SDREVDFAIDHIDKLN-RFLKQDIHEKTNYEEAAQQLRAIFR 442 (442)
T ss_pred HHHHHhcCCcCC---CCHHHHHHHHHHHHHH-HHhCCCCCCCCCHHHHHHHHHHHhC
Confidence 7777777765 4 3558888999999996 9999999999999999999988763
No 44
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=5.7e-94 Score=720.64 Aligned_cols=430 Identities=27% Similarity=0.396 Sum_probs=391.7
Q ss_pred eeeEEEEEECCEEEEecc---CCCCCCcEEEEEeCCCceeEEEEEEEECCeEEE-EEccCCCCCccCCCEEEEcCCeeeE
Q 011320 20 EYRTVTGVAGPLVILDKV---KGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVV-QVFEGTSGIDNKFTTVQFTGEVLKT 95 (488)
Q Consensus 20 ~~G~V~~I~G~li~v~g~---~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l-~~~~~t~Gl~~~G~~V~~tg~~~~V 95 (488)
..|+|++|.|+++.++-. ..+.+++++++...+...+.-||-..-++.++. ..++.++||. +|+.|..||+|++|
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~-rg~~v~dtg~pi~V 80 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLV-RGLEVIDTGKPISV 80 (468)
T ss_pred CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcc-cCcEEecCCCceEE
Confidence 469999999999999753 367899999986543113455666555666655 4689999997 79999999999999
Q ss_pred ecCccccceEecCCCcccCCCCCCCCC--ceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCCh
Q 011320 96 PVSLDMLGRIFNGSGKPIDNGPPILPE--AYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPH 173 (488)
Q Consensus 96 pvG~~lLGRVlD~lG~PlDg~~~~~~~--~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GK 173 (488)
|||++.||||+|.+|+|||+.+|+.+. .+|++++.+|...+...-++.|+||||+||.|+|+.||+|+|+|||+||||
T Consensus 81 PVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGK 160 (468)
T COG0055 81 PVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGK 160 (468)
T ss_pred ecchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccc
Confidence 999999999999999999999998866 889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHH
Q 011320 174 NEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITP 253 (488)
Q Consensus 174 t~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~ 253 (488)
|+|++++.+|..+.+ +.++||+++|||.++..+++++|+++++++||++|.+++|+||+.|.+.+
T Consensus 161 TVl~~ELI~Nia~~h---------------~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVa 225 (468)
T COG0055 161 TVLIQELINNIAKEH---------------GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVA 225 (468)
T ss_pred eeeHHHHHHHHHHHc---------------CCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeeh
Confidence 999999988875321 12899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEe
Q 011320 254 RIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILT 333 (488)
Q Consensus 254 ~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~ 333 (488)
++|+|+|||||+++|+||||++|++.||.+|.+|+|.+||++|+..||+|.|.+++..|.||... ++.||||++++|+
T Consensus 226 ltGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERIts--tk~GSITSiQavy 303 (468)
T COG0055 226 LTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITS--TKKGSITSVQAVY 303 (468)
T ss_pred hhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhc--CCCCceEEEEEEE
Confidence 99999999999777999999999999999999999999999999999999999999999999976 5689999999999
Q ss_pred ecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHH
Q 011320 334 MPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAM 413 (488)
Q Consensus 334 ~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~ 413 (488)
+|+||++||.|.++++|||+.++|||++|+.|+|||||||.|.||.+++ .++-++|+++|+++++.+++|++|++|
T Consensus 304 vPaDDlTDPapattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr~l~p----~ivGe~Hy~va~~vq~iLqrYkeLqDI 379 (468)
T COG0055 304 VPADDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDP----KIVGEEHYEVAREVQSILQRYKELQDI 379 (468)
T ss_pred eccccCCCcchhhhhhhcccceeeeHhHHhcCCCcccCcccccccccCc----ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999997 345589999999999999999999999
Q ss_pred HHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCC----------CHHHHHHHHHHHHHh----cchhhhcC
Q 011320 414 KAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSR----------NIFQSLDLAWTLLRI----FPRELLHR 472 (488)
Q Consensus 414 ~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~----------~~~~~~~~~~~~~~~----~~~~~~~~ 472 (488)
++++|.|+||++|++++.++++|+ .||+||||... ++.++++...+++.. +|...++.
T Consensus 380 IaILGmdELseedk~~V~rArki~-~FlSQpF~vAE~FTg~pG~~V~l~dti~~fk~Il~G~yd~~pE~aF~~ 451 (468)
T COG0055 380 IAILGMDELSEEDKLTVARARKIQ-RFLSQPFFVAEVFTGSPGKYVPLKDTIRGFKRILEGKYDHLPEQAFYM 451 (468)
T ss_pred HHHhCchhcChhHHHHHHHHHHHH-HHhcCcchhhheecCCCceeeeHHHHHHHHHHHhCCCcccCCHHHHhh
Confidence 999999999999999999999996 89999998755 889999999988873 34444443
No 45
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=1.3e-92 Score=702.12 Aligned_cols=275 Identities=82% Similarity=1.280 Sum_probs=258.8
Q ss_pred eeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCC
Q 011320 92 VLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 171 (488)
Q Consensus 92 ~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~ 171 (488)
+++||||++|||||+|++|+|||+++++...++++++++||+|++|.++++||+||||+||+|+|||||||+||||++|+
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 47899999999999999999999998887778889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHh
Q 011320 172 PHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (488)
Q Consensus 172 GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~ 251 (488)
|||+|+.||++|+..+ |+++.++|||++||||.+++.++++++.+.++++||++|++|+|+||++|++
T Consensus 81 GKt~L~~~i~~~~~~~------------~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 81 PHNELAAQIARQAGVV------------GEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred ChhHHHHHHHHhhhcc------------ccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 9999999999987421 1223459999999999777777778888889999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhc-CCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEe
Q 011320 252 TPRIALTTAEYLAYEC-GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIP 330 (488)
Q Consensus 252 a~~~a~tiAEyfr~d~-G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~ 330 (488)
++|+|+|+||||| |+ |+|||+++||+||||+|+||||+++||||+++||||++|+.|++|+||||++++++||||+||
T Consensus 149 a~~~a~aiAEyfr-d~~g~~VLl~~D~ltr~A~A~rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~~~~GSITa~~ 227 (276)
T cd01135 149 TPRMALTTAEYLA-YEKGKHVLVILTDMTNYAEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVEGRNGSITQIP 227 (276)
T ss_pred HHHHHHHHHHHHH-hccCCeEEEEEcChhHHHHHHHHHHhccCCCCCccCcCccHHHHhhHHheecccCCCCCeeEEEEE
Confidence 9999999999999 66 999999999999999999999999999999999999999999999999999754589999999
Q ss_pred EEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccc
Q 011320 331 ILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRL 379 (488)
Q Consensus 331 ~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~ 379 (488)
+|++|+||++|||+|+++|||||||+|||+||++||||||||+.|+||+
T Consensus 228 ~V~~~~dD~~dpi~~~~~si~DG~ivLsr~la~~g~~PAID~l~S~SR~ 276 (276)
T cd01135 228 ILTMPNDDITHPIPDLTGYITEGQIVLDRQLHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred EEEccCCCcCcchHHHHHhhcceEEEEcHHHHhCCCCCCcCCcccccCC
Confidence 9999999999999999999999999999999999999999999999996
No 46
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.6e-91 Score=716.15 Aligned_cols=420 Identities=26% Similarity=0.374 Sum_probs=393.9
Q ss_pred cceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEec
Q 011320 18 AMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPV 97 (488)
Q Consensus 18 ~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vpv 97 (488)
....|+|++|...++++.|+.++..||++++ ++| ..|.++.++.+.+.+.++++.+.|+. |+.|..||+.++|||
T Consensus 25 ~~~~g~V~sv~DgIa~v~Gl~~~~~~E~~ef--~~~--v~G~alnle~d~VG~vi~g~~~~i~e-G~~v~~Tg~i~~Vpv 99 (504)
T COG0056 25 VKEVGTVISVGDGIARVSGLENVMAGELVEF--PGG--VKGMALNLEEDSVGAVILGDYSDIKE-GDEVKRTGRILEVPV 99 (504)
T ss_pred hhccceEEEEecceEEEecCchhhcCceEEe--cCC--cEEEEEeccccceeEEEecCCccccC-CcEEEeeCceEEEec
Confidence 3478999999999999999999999999999 344 48999999999999999999999985 999999999999999
Q ss_pred CccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHH
Q 011320 98 SLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 177 (488)
Q Consensus 98 G~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll 177 (488)
|++|+|||+|++|+|+|+.+++....+.++...+|..++|.++++||+|||++||+|+|||||||.+|+|...+|||.++
T Consensus 100 g~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIA 179 (504)
T COG0056 100 GEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIA 179 (504)
T ss_pred chhhcceeecCCCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred -HHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHH
Q 011320 178 -AQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIA 256 (488)
Q Consensus 178 -~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a 256 (488)
.. +++|++.++.|||++||++++.+..+.++|++.|+|++|+||++++++|+..+|++||+|
T Consensus 180 idt-----------------IiNQk~~~v~CIYVAIGQK~stva~vv~tL~e~gAmdyTiVV~AsASd~a~lqYLaPy~g 242 (504)
T COG0056 180 IDT-----------------IINQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDYTIVVAASASDSAPLQYLAPYAG 242 (504)
T ss_pred HHH-----------------HHhcccCCcEEEEEEcccchHHHHHHHHHHHHcCCccceEEEEecCCcchhhhhhhhhhh
Confidence 22 455666788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--CCcceeEEeEEee
Q 011320 257 LTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSITQIPILTM 334 (488)
Q Consensus 257 ~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~~GSIT~i~~v~~ 334 (488)
||+||||| ++|+|||+++||||+||.|+|||||++++||+|++|||++|+.|+||+|||+++++ .+||||++|++.+
T Consensus 243 ~a~aE~f~-~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~e~g~GSiTALPIIET 321 (504)
T COG0056 243 CAMAEYFR-DNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDELGGGSITALPIIET 321 (504)
T ss_pred hHHHHHHH-hcCCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhccccCCCceEeeeeEEe
Confidence 99999999 89999999999999999999999999999999999999999999999999999975 3799999999999
Q ss_pred cCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHH
Q 011320 335 PNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMK 414 (488)
Q Consensus 335 ~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~ 414 (488)
.++|++.+||+|++|||||||||+.+|+++|+.||||+..|+||+++.+|-+ .-.+++..++..|++++++..+.
T Consensus 322 qagDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ~k-----amkkvag~lrl~laqYrel~afs 396 (504)
T COG0056 322 QAGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQIK-----AMKKVAGSLRLILAQYRELEAFS 396 (504)
T ss_pred ccCceeeecccceEEecCCcEEeehhhhhcCCCccccCCceeeccchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988764 34678888999999999999999
Q ss_pred HHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhcchh
Q 011320 415 AVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRE 468 (488)
Q Consensus 415 ~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (488)
++ |. .|++..+..|++.+++. +.|+|+.|.|.+.++++-.+|.+...|...
T Consensus 397 qf-~s-dLd~~T~~~l~~G~r~~-ellkQ~~~~p~sv~~qv~ilya~~~G~ld~ 447 (504)
T COG0056 397 QF-GS-DLDKATRKQLERGKRLT-ELLKQPQYSPLSVEEQVLILYAGTNGYLDD 447 (504)
T ss_pred hh-cc-hhCHHHHHHHHccHHHH-HHhcCCCCCCccHHHHHHHHHHHhcCcccC
Confidence 86 43 47899999999999996 899999999999999999999887776544
No 47
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=8.9e-89 Score=771.14 Aligned_cols=259 Identities=27% Similarity=0.411 Sum_probs=235.1
Q ss_pred CCeEEEEEEecCc-hHHHHHHHHhh-------ccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEE
Q 011320 203 DNFAIVFAAMGVN-METAQFFKRDF-------EENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVI 274 (488)
Q Consensus 203 ~~~~~V~~~iGer-~e~~~~~~~~l-------~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli 274 (488)
+.++|||++|||| +|+.+++ +++ .+.++|+|||+|+||||+||++|++++|+|+||||||| |||+|||+|
T Consensus 681 ~adi~V~~~iGERg~Ev~e~l-~~~~~l~~~~~g~~~m~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfr-d~G~~Vll~ 758 (1017)
T PRK14698 681 DAQVVIYIGCGERGNEMTDVL-EEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYDVALM 758 (1017)
T ss_pred CCCEEEEEeeccchHHHHHHH-HHHHhhcccccCccccccEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEE
Confidence 5579999999999 5555555 554 23567999999999999999999999999999999999 999999999
Q ss_pred EcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccC-----CCCcceeEEeEEeecCCCCCCCccccccc
Q 011320 275 LTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE-----GRKGSITQIPILTMPNDDITHPTPDLTGY 349 (488)
Q Consensus 275 ~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~-----~~~GSIT~i~~v~~~~dD~~dpi~d~~~~ 349 (488)
+||+||||+|+||||+++||||+++|||||||++||+||||||++. +++||||+||+|++||||++|||++++++
T Consensus 759 ~Ds~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ERaG~~~~l~~~~~~GSIT~i~~V~~~g~D~s~Pv~~~~~~ 838 (1017)
T PRK14698 759 ADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLR 838 (1017)
T ss_pred eccchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhccCCcccCCCCCCcceEEEEEEECCCCCCCCcHHHHHHH
Confidence 9999999999999999999999999999999999999999999863 25799999999999999999999999999
Q ss_pred ccceEEEeeccccccCCCCCCcCCCCcccccccccccc--cccccHHHHHHHHHHHHHccccHHHHHHHhCCcCCCHHHH
Q 011320 350 ITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEG--MTRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDL 427 (488)
Q Consensus 350 i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~--~~~~~h~~~~~~l~~~y~~~~~l~~~~~~~G~d~l~~~~~ 427 (488)
|+||||+|||+||++||||||||+.|+||+|+.+-.++ ..+++|.++++++++.|+++++++++.++.|.+.+++.|+
T Consensus 839 i~dg~i~L~~~La~~g~~PAId~l~S~Sr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~el~~~i~l~g~~~l~~~d~ 918 (1017)
T PRK14698 839 VVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNVDPEWKAMRDKAMELLQKEAELQEIVRIVGPDALPERER 918 (1017)
T ss_pred HhCcEEecCHHHHhCCCCCCcCcccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 99999999999999999999999999999999652211 2457899999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHhccCCCCC----CCHHHHHHHHHHHHH
Q 011320 428 LYLEFLDKFERKFVAQGAYDS----RNIFQSLDLAWTLLR 463 (488)
Q Consensus 428 ~~l~~~~~i~~~fL~Q~~~~~----~~~~~~~~~~~~~~~ 463 (488)
..+++++.|++.||+|+.|++ .++++++..+..++.
T Consensus 919 ~~~~~~~~i~e~fL~Q~~~~~~d~~~~~~~~~~~l~~i~~ 958 (1017)
T PRK14698 919 AILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLN 958 (1017)
T ss_pred HHHHHhHHHHhccCCCCCCCccccCCCHHHHHHHHHHHHH
Confidence 999999999889999999877 578888877766654
No 48
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=1.2e-89 Score=681.00 Aligned_cols=270 Identities=31% Similarity=0.484 Sum_probs=257.6
Q ss_pred eeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCC
Q 011320 93 LKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (488)
Q Consensus 93 ~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~G 172 (488)
++||||++|||||+|++|+|||+.+++....++++++.+|+|++|.++++||+||||+||+|+|||||||++|||++|+|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 68999999999999999999999988877778899999999999999999999999999999999999999999999999
Q ss_pred hhHH-HHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHh
Q 011320 173 HNEI-AAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (488)
Q Consensus 173 Kt~L-l~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~ 251 (488)
||+| +++|+++.. + +++|||++||||.+++.++++++.+.++++||++|++|+|+||.+|++
T Consensus 82 Kt~L~l~~i~~~~~-------~----------~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 82 KTAIAIDTIINQKG-------K----------KVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred ccHHHHHHHHHhcC-------C----------CeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 9999 688888753 2 347899999999888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCC--CCcceeEE
Q 011320 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEG--RKGSITQI 329 (488)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~--~~GSIT~i 329 (488)
++|+|||+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.+. ++||||+|
T Consensus 145 a~~~a~aiAE~fr-~~G~~Vlvl~DslTr~A~A~rEisl~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~~~~GSIT~i 223 (274)
T cd01132 145 APYTGCAMGEYFM-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDELGGGSLTAL 223 (274)
T ss_pred HHHHHHHHHHHHH-HCCCCEEEEEcChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHhHHHHHHhhhccCCCCCcceEEE
Confidence 9999999999999 89999999999999999999999999999999999999999999999999998752 48999999
Q ss_pred eEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCccccc
Q 011320 330 PILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLM 380 (488)
Q Consensus 330 ~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~ 380 (488)
|+|++|+||++|||+|+++|||||||+|||+||++||||||||+.|+||++
T Consensus 224 ~~V~~~~dD~~~pi~~~~~~i~dg~ivLsr~la~~g~yPaId~l~S~SR~g 274 (274)
T cd01132 224 PIIETQAGDVSAYIPTNVISITDGQIFLETDLFNKGIRPAINVGLSVSRVG 274 (274)
T ss_pred EEEEcCCCCcCcchHHHHHhhcCeEEEEcHHHHhCCCCCCcCCcccccCCC
Confidence 999999999999999999999999999999999999999999999999984
No 49
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=2.8e-89 Score=679.58 Aligned_cols=272 Identities=29% Similarity=0.465 Sum_probs=258.3
Q ss_pred eeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCC
Q 011320 92 VLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 171 (488)
Q Consensus 92 ~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~ 171 (488)
+++||||++|||||+|++|+|||+.+++...+++++++.+|+|++|.++++||+||||+||+|+|||||||++|||++|+
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 47899999999999999999999998887778889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHh
Q 011320 172 PHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (488)
Q Consensus 172 GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~ 251 (488)
|||+|+.+++++..+- . ..+|||++||||.+++.++++++.+.++++||++|++|+|+||.+|++
T Consensus 81 GKTtLa~~i~~~i~~~-------------~--~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 81 GKTVLIMELINNIAKA-------------H--GGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred ChhHHHHHHHHHHHhc-------------C--CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 9999999999886421 1 238999999999777777788888888999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhc-CCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEe
Q 011320 252 TPRIALTTAEYLAYEC-GKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIP 330 (488)
Q Consensus 252 a~~~a~tiAEyfr~d~-G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~ 330 (488)
++|+|+|+||||| |+ |+||||++||+||||+|+||||+++||+|+++||||++|+.|++||||||+ .++||||+||
T Consensus 146 ~~~~a~~~AEyfr-~~~g~~Vl~~~Dsltr~a~A~reis~~~ge~p~~~gyp~~~f~~~~~l~ERag~--~~~GSiT~~~ 222 (274)
T cd01133 146 VALTGLTMAEYFR-DEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGALQERITS--TKKGSITSVQ 222 (274)
T ss_pred HHHHHHHHHHHHH-HhcCCeEEEEEeChhHHHHHHHHHHHHcCCCCCCcCcCccHHHHHHHHHHHhcC--CCCcccceEE
Confidence 9999999999999 67 999999999999999999999999999999999999999999999999997 4589999999
Q ss_pred EEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccc
Q 011320 331 ILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMK 381 (488)
Q Consensus 331 ~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~ 381 (488)
+|++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+
T Consensus 223 ~v~~~~dD~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~ 273 (274)
T cd01133 223 AVYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRILD 273 (274)
T ss_pred EEEecCCCCCCchHHHHHHhcceEEEEcHHHHhCCCCCCcCCccchhcccC
Confidence 999999999999999999999999999999999999999999999999996
No 50
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=4.5e-86 Score=672.69 Aligned_cols=324 Identities=27% Similarity=0.473 Sum_probs=292.0
Q ss_pred eeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCC
Q 011320 92 VLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 171 (488)
Q Consensus 92 ~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~ 171 (488)
+++||||++|||||+|++|+|||+.+++....++|+++.||+|++|.+++++|.||+++||.++|+++|||++|||++|+
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 47899999999999999999999998877777889999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHh
Q 011320 172 PHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERII 251 (488)
Q Consensus 172 GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~ 251 (488)
|||+|+.+|+++.. .+ ++|+++|||+.+++.++.+++.+.+.++||++|++|+|+||.+|++
T Consensus 81 GKTtLl~~Ia~~~~-------~~-----------~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 81 GKSTLLGMIARGTT-------AD-----------VNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred ChHHHHHHHhCCCC-------CC-----------EEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 99999999987653 23 7999999999655555555555566699999999999999999999
Q ss_pred HHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeE
Q 011320 252 TPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPI 331 (488)
Q Consensus 252 a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~ 331 (488)
++|+|+|+||||| |+|+||||++||+||||+|+|||++++||||+++||||++|+.|++|+||||+. ++||||+|++
T Consensus 143 ~~~~a~~~AEyfr-~~g~~Vll~~Dsltr~a~A~rei~~~~ge~p~~~gyp~~~~~~~~~l~ERag~~--~~GSIT~i~t 219 (326)
T cd01136 143 AAYTATAIAEYFR-DQGKDVLLLMDSLTRFAMAQREIGLAAGEPPTTKGYPPSVFALLPRLLERAGNS--DKGSITAFYT 219 (326)
T ss_pred HHHHHHHHHHHHH-HcCCCeEEEeccchHHHHHHHHHHHhcCCCCCcCCcChHHHHHhHHHHHHhcCC--CCCCeeeeee
Confidence 9999999999999 899999999999999999999999999999999999999999999999999985 4699999999
Q ss_pred EeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHH
Q 011320 332 LTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQ 411 (488)
Q Consensus 332 v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~ 411 (488)
|++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+++ ++|+++++++++.|+++++++
T Consensus 220 v~~~gdd~~dpi~~~~~~~~dg~ivL~r~la~~g~~PAid~~~S~SR~~~~~~~-----~~~~~~a~~~r~~l~~y~e~~ 294 (326)
T cd01136 220 VLVEGDDLNEPIADAVRSILDGHIVLSRALAAAGHYPAIDVLKSISRLMNAVVT-----PEHKEAARKLRELLSAYQEVE 294 (326)
T ss_pred eeecCCCCCcchHHhhhhccceEEEEcCcHHHcCCCCCcccccccccCccccCC-----HHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999999999997554 789999987776666666666
Q ss_pred HHHHHhCC--cCCCHHHHHHHHHHhHHHHHHhcc
Q 011320 412 AMKAVVGE--EALSSEDLLYLEFLDKFERKFVAQ 443 (488)
Q Consensus 412 ~~~~~~G~--d~l~~~~~~~l~~~~~i~~~fL~Q 443 (488)
++.++ |. ..++++.+++++++++|+ .||+|
T Consensus 295 ~~i~~-g~y~~g~d~~~d~~i~~~~~i~-~~l~Q 326 (326)
T cd01136 295 DLIRI-GAYKKGSDPEVDEAIKLLPKIE-AFLKQ 326 (326)
T ss_pred HHHHh-cCCCCCCCHHHHHHHHhHHHHH-HHhCC
Confidence 66554 21 123446667899999996 89998
No 51
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=6.5e-85 Score=642.51 Aligned_cols=431 Identities=26% Similarity=0.371 Sum_probs=389.8
Q ss_pred cceeeEEEEEECCEEEEeccC-CCCCCcEEEEEeCCCceeEEEEEEEECCeEEEE-EccCCCCCccCCCEEEEcCCeeeE
Q 011320 18 AMEYRTVTGVAGPLVILDKVK-GPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQ-VFEGTSGIDNKFTTVQFTGEVLKT 95 (488)
Q Consensus 18 ~~~~G~V~~I~G~li~v~g~~-~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~-~~~~t~Gl~~~G~~V~~tg~~~~V 95 (488)
....|+|+.|.|+++.+.-.. .+.+-+.++|...+. .+..||...-+++++.. .+++|+||. ||.+|..||.|++|
T Consensus 49 ~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~-~lvlEV~qhlG~n~VR~iAMdgTEGLv-RG~~VlDtG~Pi~i 126 (521)
T KOG1350|consen 49 KKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDT-RLVLEVAQHLGENTVRTIAMDGTEGLV-RGQKVLDTGYPISI 126 (521)
T ss_pred cccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCc-eeeeHHHHHhCcCeEEEEEecCchhhh-cCcccccCCCceee
Confidence 346899999999999884322 357888888864443 35566666667766664 699999996 79999999999999
Q ss_pred ecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhH
Q 011320 96 PVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNE 175 (488)
Q Consensus 96 pvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~ 175 (488)
|||++.||||+|.+|+|+|+++|+....+.||+..+|...+.....++|.||||++|+|.|..||+|+|+|||+|+|||+
T Consensus 127 pVG~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTV 206 (521)
T KOG1350|consen 127 PVGPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 206 (521)
T ss_pred ecCHHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCC------cceEEEEEeCCCCCHHHH
Q 011320 176 IAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGS------MERVTLFLNLANDPTIER 249 (488)
Q Consensus 176 Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~------~~~tvvv~~t~~~~~~~r 249 (488)
|+.++.+|..+++ +.+.||+++|||.++...++++|.+.|+ -+|..+|..++|+||++|
T Consensus 207 lImELINNiAKaH---------------GGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~~SKvaLV~GQMNePPGAR 271 (521)
T KOG1350|consen 207 LIMELINNIAKAH---------------GGYSVFAGVGERTREGNDLYHEMIESGVINLEGETSKVALVYGQMNEPPGAR 271 (521)
T ss_pred eHHHHHHHHHHhc---------------CCeEEeeccccccccccHHHHHHHhcCeeeccCCcceEEEEeeccCCCCCce
Confidence 9999998876543 2299999999999999999999988764 378899999999999999
Q ss_pred HhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEE
Q 011320 250 IITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQI 329 (488)
Q Consensus 250 ~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i 329 (488)
.+.+.||+|+|||||+..|+||||++|++.||.+|..|+|.++|++|+..||+|.+..++..+.||... +++||||++
T Consensus 272 aRV~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITt--TkkGSiTSv 349 (521)
T KOG1350|consen 272 ARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT--TKKGSITSV 349 (521)
T ss_pred eeeeeecccHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhc--cccCceeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999976 578999999
Q ss_pred eEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHcccc
Q 011320 330 PILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKD 409 (488)
Q Consensus 330 ~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~ 409 (488)
++|++|+||++||.|..+++++|..-||||.+++.|+|||+|||.|.||+|++. ++-++||++|+++.+.++.|+.
T Consensus 350 QAvYVPADDLtDPaPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimdp~----ivG~eHY~vA~~Vqk~LQ~YKs 425 (521)
T KOG1350|consen 350 QAVYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPN----IVGEEHYNVARGVQKTLQDYKS 425 (521)
T ss_pred EEEEeehhccCCCCccceeeccchhhhhhhhhHhcCCccccCCccccccccCcc----ccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999973 4558999999999999999999
Q ss_pred HHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCC----------CHHHHHHHHHHHHHh----cchhhhcC
Q 011320 410 VQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSR----------NIFQSLDLAWTLLRI----FPRELLHR 472 (488)
Q Consensus 410 l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~----------~~~~~~~~~~~~~~~----~~~~~~~~ 472 (488)
|+++++++|+|+||++|+++++++++|+ +||+|||.... ++++++.....+|+. +|...+|+
T Consensus 426 LQDIIAILGmDELSEeDkLTV~RARKiq-RFLSQPF~VAEvFTG~~GklV~l~~ti~gF~~iL~Ge~D~lPE~AFYm 501 (521)
T KOG1350|consen 426 LQDIIAILGMDELSEEDKLTVARARKIQ-RFLSQPFQVAEVFTGHPGKLVPLEETIRGFKAILEGEYDHLPEQAFYM 501 (521)
T ss_pred HHHHHHHhCchhhchhhhhhHHHHHHHH-HHHcCchhhhhhhcCCCCceecHHHHHHHHHHHhcCcccCCchhheee
Confidence 9999999999999999999999999997 89999986543 888888888887763 34444444
No 52
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=3.4e-84 Score=671.54 Aligned_cols=420 Identities=26% Similarity=0.419 Sum_probs=375.4
Q ss_pred eeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEecCcc
Q 011320 21 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLD 100 (488)
Q Consensus 21 ~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~VpvG~~ 100 (488)
.|+|.+|+||+|.++|+..+.++|+|+|. +..+.||||++++|++.+|+|++|+||++ |.+|..||+|++|.+||+
T Consensus 2 ~G~i~~isGp~V~a~gm~~~~my~~v~Vg---~~~L~gEiI~i~gd~a~iQVyE~T~Gi~~-Ge~V~~Tg~pLsvELGPG 77 (588)
T COG1155 2 MGKIIRISGPVVVAEGMEGAKMYDVVKVG---EMGLIGEIIRIEGNRATIQVYEDTAGIRP-GEKVENTGRPLSVELGPG 77 (588)
T ss_pred CceEEEEECCEEEEecCcCCceEEEEEEc---CCceeEEEEEEeCCeEEEEEEeecCCCCC-CCeeecCCCceEEEeCcc
Confidence 69999999999999999999999999994 34689999999999999999999999997 999999999999999999
Q ss_pred ccceEecCCCcccCCC--------------CCCCCCc-------------------------------------------
Q 011320 101 MLGRIFNGSGKPIDNG--------------PPILPEA------------------------------------------- 123 (488)
Q Consensus 101 lLGRVlD~lG~PlDg~--------------~~~~~~~------------------------------------------- 123 (488)
||+.|+||++|||+.. +++....
T Consensus 78 ll~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v 157 (588)
T COG1155 78 LLKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKV 157 (588)
T ss_pred HHhhhhhhccChHHHHHHHhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEE
Confidence 9999999999999831 1111000
Q ss_pred -------------------------------eeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCC
Q 011320 124 -------------------------------YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 172 (488)
Q Consensus 124 -------------------------------~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~G 172 (488)
+||+.. |-+..++.++.+||.||.|+||+|+|+.||+.-.|.|+.|+|
T Consensus 158 ~~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~-~rp~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsG 236 (588)
T COG1155 158 TWIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRK-ARPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSG 236 (588)
T ss_pred EEEecCCCceeeEEEEEEecCCCeEEEEEEEeccccC-CccccccCCCCCcccccceeehhhcccccCccccccCCCCCC
Confidence 012211 222346788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhc-------cCCCcceEEEEEeCCCCC
Q 011320 173 HNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFE-------ENGSMERVTLFLNLANDP 245 (488)
Q Consensus 173 Kt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~-------~~~~~~~tvvv~~t~~~~ 245 (488)
||++.++++++++ +| ++||++||||..+..++..+|. +..+|+||++|+|||+||
T Consensus 237 KTV~qh~laK~sd-------ad-----------iVVyigCGERGNEmtevL~eFPeL~Dp~tg~~lm~RT~liaNTSnMP 298 (588)
T COG1155 237 KTVSQHTLSKLAD-------GD-----------IVIYVGCGERGNEMTEVLQEFPELKDPNTGQPLMDRTVLIANTSNMP 298 (588)
T ss_pred cEehhhhhhhhcc-------CC-----------EEEEEecCCccchHHHHHHhCccccCCCCCCcccceeeEeecCccch
Confidence 9999999999976 56 9999999999444444444443 334799999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccC-----
Q 011320 246 TIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE----- 320 (488)
Q Consensus 246 ~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~----- 320 (488)
.++|+++.|+|+|+||||| |||+||+++.||++|||+|+||||.+++|+|+.+|||.||-++|++||||||++.
T Consensus 299 VAAREasIYtGiTiaEY~R-DmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~ 377 (588)
T COG1155 299 VAAREASIYTGITIAEYYR-DMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPE 377 (588)
T ss_pred HHHhhhhhhhhhhHHHHHH-hhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeecCCC
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999885
Q ss_pred CCCcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCccccccccccccc---ccccHHHHH
Q 011320 321 GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM---TRRDHSDVS 397 (488)
Q Consensus 321 ~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~---~~~~h~~~~ 397 (488)
.+.||+|++++|+++|||+++|++.+|+.+.-.+|-||++||+++|||||||+.|+|.+.+.+-. |+ +++++..+.
T Consensus 378 ~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~-~~~~~v~~~~~~~r 456 (588)
T COG1155 378 ERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRS-WYDENVSPEWGALR 456 (588)
T ss_pred cceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHHHH-HhhcccCchHHHHH
Confidence 24699999999999999999999999999999999999999999999999999999999996532 22 335677777
Q ss_pred HHHHHHHHccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHHhc
Q 011320 398 NQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIF 465 (488)
Q Consensus 398 ~~l~~~y~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~~~ 465 (488)
.++++.+++..+|+++++++|.|++++.++.++..++.|++.||+|+.|+++|..+++.+++.||+.+
T Consensus 457 ~~a~~~Lq~e~elqeiv~lVG~eal~e~~~~il~va~~ire~fLqQnafd~vD~~~~~~kq~~mm~~i 524 (588)
T COG1155 457 DQAMEILQRESELQEIVQLVGYDALPEKEKSILDVARIIREDFLQQNAFDEIDAYCSLRKQYLMLKAI 524 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHhhcccCcccccCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998865
No 53
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=100.00 E-value=1e-82 Score=639.65 Aligned_cols=423 Identities=26% Similarity=0.420 Sum_probs=368.9
Q ss_pred ccccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeee
Q 011320 15 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLK 94 (488)
Q Consensus 15 ~~~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~ 94 (488)
-+....+|+|.+|+||+|.++++.++.++|+|+|.+ ..+.||||.+++|.+.+|+|++|+|+.+ |++|..||+|++
T Consensus 15 e~~es~~G~v~~VSGPVV~a~~M~G~aMYELVrVGh---~~LvGEiIrlegD~aTIQVYEeTsG~tV-gDpvlrTgkPLs 90 (618)
T KOG1352|consen 15 EEEESEYGRVYSVSGPVVVAENMAGCAMYELVRVGH---DELVGEIIRLEGDMATIQVYEETSGLTV-GDPVLRTGKPLS 90 (618)
T ss_pred chhhhccceEEeccCceEehhcccchHHHHHHHcch---HhhhhheeEecCceeEEEEEeccCCccc-CCchhhcCCcce
Confidence 345678999999999999999999999999999953 2478999999999999999999999998 999999999999
Q ss_pred EecCccccceEecCCCcccCCCCCCCC---------------Cc------------------------------------
Q 011320 95 TPVSLDMLGRIFNGSGKPIDNGPPILP---------------EA------------------------------------ 123 (488)
Q Consensus 95 VpvG~~lLGRVlD~lG~PlDg~~~~~~---------------~~------------------------------------ 123 (488)
|.+||+++|.|+|+++|||........ +.
T Consensus 91 vELGPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~hki~l 170 (618)
T KOG1352|consen 91 VELGPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKHKILL 170 (618)
T ss_pred EeeCcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhceeec
Confidence 999999999999999999963211000 00
Q ss_pred ---------------------------------------eeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEE
Q 011320 124 ---------------------------------------YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIP 164 (488)
Q Consensus 124 ---------------------------------------~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~g 164 (488)
.||+ +.|-+..+..+-+.||.||.|++|+|+||..|+...
T Consensus 171 pPr~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPV-R~pRPv~ekl~an~PLltGQRvLDalfPcVqGGTta 249 (618)
T KOG1352|consen 171 PPRARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPV-RQPRPVTEKLPANHPLLTGQRVLDALFPCVQGGTTA 249 (618)
T ss_pred CCccCceEEEEecCCccccccEEEEEeecCceeeEEEEEeccc-CCCcchhhccCCCCcccccchHHHhhcchhcCCccc
Confidence 0111 112223457778999999999999999999999999
Q ss_pred eccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHHHHHHHHhhc---------cCCCcce
Q 011320 165 LFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-METAQFFKRDFE---------ENGSMER 234 (488)
Q Consensus 165 Ifg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~~~~~~~~l~---------~~~~~~~ 234 (488)
|.|..|||||++.+.+.+.++ .| ++||++|||| .|+.|.+ .++. .+.+|+|
T Consensus 250 IPGAFGCGKTVISQsLSKYSN-------SD-----------~iiYVGCGERGNEMsEVL-~dFPeLt~ev~G~~esiMKR 310 (618)
T KOG1352|consen 250 IPGAFGCGKTVISQSLSKYSN-------SD-----------AIIYVGCGERGNEMSEVL-MDFPELTMEVDGKTESIMKR 310 (618)
T ss_pred cCcccccchHHHHHHHhhccC-------CC-----------eEEEEcccccchhHHHHH-HhChhhEEecCCcchhhhhh
Confidence 999999999999999988765 45 9999999999 5555544 3332 3458999
Q ss_pred EEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHH
Q 011320 235 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYE 314 (488)
Q Consensus 235 tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~E 314 (488)
|++|+||||+|.++|+++.|||+|+||||| |||+||-.|.||++|||+|+||||.+|+|+|+..|||+++.++|++|||
T Consensus 311 T~LVANTSNMPVAAREASIYTGITlsEYfR-DmG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYE 389 (618)
T KOG1352|consen 311 TALVANTSNMPVAAREASIYTGITLSEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYE 389 (618)
T ss_pred hhhhhcCCCCchhhhhhhhhhcccHHHHHH-hcCcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hhcccC-----CCCcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCccccccccccccc-
Q 011320 315 RAGRIE-----GRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGM- 388 (488)
Q Consensus 315 Rag~~~-----~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~- 388 (488)
|||+++ .+.||+|++++|++|||||+||++.+|.+|+.-+|-||++||+|.|||.|||+.|+|++|..+.. +|
T Consensus 390 RAG~vkcLGsP~ReGsVsIVgAVSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL~~-~Ye 468 (618)
T KOG1352|consen 390 RAGRVKCLGSPDREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDP-FYE 468 (618)
T ss_pred hcCceeecCCCCcCceeEEEEeecCCCCCcCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHHHHHHHH-HHH
Confidence 999986 47999999999999999999999999999999999999999999999999999999999997642 22
Q ss_pred -ccccHHHHHHHHHHHHHccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHHHHHHHH
Q 011320 389 -TRRDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLR 463 (488)
Q Consensus 389 -~~~~h~~~~~~l~~~y~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~~~~~~~ 463 (488)
..++..-+..+.+..+++.+||.++.+++|..+|++.|+.+|+.+..|.++||+|+.|.++|-.+.+-+..-+|+
T Consensus 469 ~~~peF~~lRtk~keilq~eedl~eivQLVGK~aL~etdKitLevaklik~DfLqQN~ys~YD~~CPfyKt~~Mlr 544 (618)
T KOG1352|consen 469 KNYPEFVVLRTKAKEILQEEEDLSEIVQLVGKSALAETDKITLEVAKLIKDDFLQQNGYSPYDRFCPFYKTVGMLR 544 (618)
T ss_pred hcCCCccchHHHHHHHHhhhhhHHHHHHHhhhhhhhhcchhhHHHHHHHHHHHHhhcCCCchhhcCchHHHHHHHH
Confidence 224555566789999999999999999999999999999999999999999999999999866555544444433
No 54
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=3e-81 Score=635.49 Aligned_cols=235 Identities=29% Similarity=0.466 Sum_probs=219.2
Q ss_pred eeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCC
Q 011320 125 LDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDN 204 (488)
Q Consensus 125 ~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~ 204 (488)
||++.++|.+ +|..+++||.||||+||+|+|++||||++|||++|+|||+|+++|++|.. +|
T Consensus 123 ~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~~~-------~d---------- 184 (369)
T cd01134 123 WPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKYSN-------SD---------- 184 (369)
T ss_pred eecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhCCC-------CC----------
Confidence 4666667777 99999999999999999999999999999999999999999999999864 45
Q ss_pred eEEEEEEecCchHHHHHHHHhhc-------cCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcc
Q 011320 205 FAIVFAAMGVNMETAQFFKRDFE-------ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTD 277 (488)
Q Consensus 205 ~~~V~~~iGer~e~~~~~~~~l~-------~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Ds 277 (488)
+|||++||||.+++.++.++|. ++++|+||++|+||||+||++|++++|+|+|+||||| |||+|||+|+||
T Consensus 185 -vvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfr-d~G~dVll~~Ds 262 (369)
T cd01134 185 -IVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFR-DMGYNVALMADS 262 (369)
T ss_pred -EEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEcC
Confidence 9999999999555555555543 4567999999999999999999999999999999999 999999999999
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccC-----CCCcceeEEeEEeecCCCCCCCcccccccccc
Q 011320 278 MSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE-----GRKGSITQIPILTMPNDDITHPTPDLTGYITE 352 (488)
Q Consensus 278 ltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~-----~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~D 352 (488)
+||||+|+||||+++||||+++|||+|+|++|++||||||+++ +++||||+|++|++|+||++|||++++++|+|
T Consensus 263 ~tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSIT~i~~V~~~g~D~sdPV~~~t~~i~d 342 (369)
T cd01134 263 TSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSVTIVGAVSPPGGDFSEPVTQATLRIVQ 342 (369)
T ss_pred hhHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccEEEEEEEEccCCCcCcchHHhhHhhcc
Confidence 9999999999999999999999999999999999999999985 35799999999999999999999999999999
Q ss_pred eEEEeeccccccCCCCCCcCCCCcccc
Q 011320 353 GQIYIDRQLQNRQIYPPINVLPSLSRL 379 (488)
Q Consensus 353 g~ivLsr~La~~g~yPAID~l~S~SR~ 379 (488)
|||+|||+||++||||||||+.|+||+
T Consensus 343 g~i~Lsr~La~~g~yPAId~l~S~Sry 369 (369)
T cd01134 343 VFWGLDKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred eEEEECHHHHhCCCCCCcCCcccccCC
Confidence 999999999999999999999999996
No 55
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=4.5e-70 Score=527.44 Aligned_cols=213 Identities=40% Similarity=0.703 Sum_probs=200.7
Q ss_pred cceeeeeeeeecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHh
Q 011320 146 TGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRD 225 (488)
Q Consensus 146 TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~ 225 (488)
||||+||+|+|||||||++|||++|+|||+|+.+|+++.. +| ++||++||||.+++.++.++
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~-------~d-----------~~V~~~iGer~~Ev~~~~~~ 62 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD-------AD-----------VVVYALIGERGREVTEFIEE 62 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT-------TT-----------EEEEEEESECHHHHHHHHHH
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhccc-------cc-----------ceeeeeccccchhHHHHHHH
Confidence 8999999999999999999999999999999999999874 34 77999999998888888999
Q ss_pred hccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCch
Q 011320 226 FEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYM 305 (488)
Q Consensus 226 l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~l 305 (488)
++++++++||++|++|+|+||++|++++|+||++||||| |+|+|||+++||+||||+|+|||++++||+|+++|||+++
T Consensus 63 ~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfr-d~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~ 141 (215)
T PF00006_consen 63 LKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEYFR-DQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSL 141 (215)
T ss_dssp HHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHHHH-HTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTH
T ss_pred HhhcccccccccccccchhhHHHHhhhhccchhhhHHHh-hcCCceeehhhhhHHHHHHHHhhhcccccccccccccchh
Confidence 999999999999999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhhccc--CCCCcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcc
Q 011320 306 YTDLAQIYERAGRI--EGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLS 377 (488)
Q Consensus 306 fs~l~~l~ERag~~--~~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~S 377 (488)
|+.|++|+||||++ ..++||||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+|
T Consensus 142 ~~~l~~l~ERag~~~~~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 142 FSDLASLYERAGKVNSEEGGGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp HHHHHHHHTTSEEBSTTTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred ccchhhHHHHhhccccccCCceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 99999999999998 2358999999999999999999999999999999999999999999999999999998
No 56
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=8.6e-69 Score=550.86 Aligned_cols=306 Identities=17% Similarity=0.202 Sum_probs=271.9
Q ss_pred cCCCCCccCCCEEEEcCCeeeEecCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccce-ecceeeee
Q 011320 74 EGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMI-QTGISTID 152 (488)
Q Consensus 74 ~~t~Gl~~~G~~V~~tg~~~~VpvG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l-~TGI~aID 152 (488)
=...||+. |+.|..++++ ++|+.+||||+|++|+|+|+.. .........|++|.+|.++.+++ .+|+|+||
T Consensus 54 i~~~~l~~-Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID 125 (380)
T PRK12608 54 IRRFNLRT-GDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----RRPHFDDLTPLHPRERLRLETGSDDLSMRVVD 125 (380)
T ss_pred HHHhCCCC-CCEEEeccCC---CCChhheEEEeccCCcCchhcc----cccCcCcCCCCCccccccccccCcchhHhhhh
Confidence 34578985 9999999998 9999999999999999999873 22335677899999999999888 89999999
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCc
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSM 232 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~ 232 (488)
+|+|||||||++|+|++|+|||+|+.+|+++... +.++..|++++||||.+++.++++.+..
T Consensus 126 ~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~--------------~~~dv~~vv~lIgER~~EV~df~~~i~~---- 187 (380)
T PRK12608 126 LVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA--------------NHPEVHLMVLLIDERPEEVTDMRRSVKG---- 187 (380)
T ss_pred heeecCCCceEEEECCCCCCHHHHHHHHHHHHHh--------------cCCCceEEEEEecCCCCCHHHHHHHHhh----
Confidence 9999999999999999999999999999887641 1123468999999997666666676643
Q ss_pred ceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHH
Q 011320 233 ERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQI 312 (488)
Q Consensus 233 ~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l 312 (488)
.++++++|+|+..|.+++++++++||||+ ++|+||++++||+||||+|+||++++.||+|+ +||||++|+.+++|
T Consensus 188 ---~Vvast~de~~~~~~~v~~~~~~~Ae~f~-~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s-~G~~~s~~~~~~rl 262 (380)
T PRK12608 188 ---EVYASTFDRPPDEHIRVAELVLERAKRLV-EQGKDVVILLDSLTRLARAYNNEVESSGRTLS-GGVDARALQRPKRL 262 (380)
T ss_pred ---hEEeecCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEeCcHHHHHHHHhhhcccCCCCC-CCcChHHHhhhHHH
Confidence 58899999999999999999999999999 89999999999999999999999999999999 89999999999999
Q ss_pred HHhhcccCCCCcceeEEeEEeec-CCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccc
Q 011320 313 YERAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRR 391 (488)
Q Consensus 313 ~ERag~~~~~~GSIT~i~~v~~~-~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~ 391 (488)
+||||+.+ ++||||+|+||+++ |+||+|||+|++++++||||+|||+||++|||||||+++|.||.++.++ ++
T Consensus 263 ~~~A~~~~-~~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S~sR~~~~l~-----~~ 336 (380)
T PRK12608 263 FGAARNIE-EGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELLL-----DS 336 (380)
T ss_pred HHhcCCCC-CCcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCCCCccCcccccCcchhhcC-----CH
Confidence 99999974 48999999999999 9999999999999999999999999999999999999999999999755 47
Q ss_pred cHHHHHHHHHHHHHccccHHHHHHH
Q 011320 392 DHSDVSNQLYANYAIGKDVQAMKAV 416 (488)
Q Consensus 392 ~h~~~~~~l~~~y~~~~~l~~~~~~ 416 (488)
+|.+.+.++++.++.+++.+.+..+
T Consensus 337 ~~~~~~~~~R~~l~~~~~~e~~~~~ 361 (380)
T PRK12608 337 KELEKVRRLRRALASRKPVEAMEAL 361 (380)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8999998777766666655555443
No 57
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=9.3e-61 Score=492.29 Aligned_cols=259 Identities=17% Similarity=0.229 Sum_probs=235.2
Q ss_pred CCCCCCCCCCCccc--ceecceeeeeeeeecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeE
Q 011320 129 GSSINPSERTYPEE--MIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFA 206 (488)
Q Consensus 129 ~~~~~~~~R~~~~~--~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~ 206 (488)
..|++|.+|.++.+ ++.||+|+||+|+|||||||.+|||++|+|||||+.+|+++... +..+.+
T Consensus 136 l~p~~p~~R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~--------------nhFDv~ 201 (416)
T PRK09376 136 LTPLYPNERLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITT--------------NHPEVH 201 (416)
T ss_pred CCCCChhhcccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHh--------------hcCCeE
Confidence 46889999999987 79999999999999999999999999999999999999887642 112357
Q ss_pred EEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHH
Q 011320 207 IVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALR 286 (488)
Q Consensus 207 ~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~r 286 (488)
|++++||||.+++..+.+.+.. +||++|+|+||..|++++|.++++||||+ ++|+||+|++||+||||+|+|
T Consensus 202 ~~VvLIgER~~EVtdiqrsIlg-------~vv~st~d~~~~~~~~~a~~~ie~Ae~~~-e~G~dVlL~iDsItR~arAqr 273 (416)
T PRK09376 202 LIVLLIDERPEEVTDMQRSVKG-------EVVASTFDEPAERHVQVAEMVIEKAKRLV-EHGKDVVILLDSITRLARAYN 273 (416)
T ss_pred EEEEEeCCchhHHHHHHHHhcC-------cEEEECCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEEChHHHHHHHH
Confidence 8999999998888777777752 69999999999999999999999999999 899999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeec-CCCCCCCcccccccccceEEEeeccccccC
Q 011320 287 EVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYIDRQLQNRQ 365 (488)
Q Consensus 287 Eisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~-~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g 365 (488)
|++++.||+|+ .||+|+.|+.+++|+|||++++ ++||||+|+||+++ |++|+|||++++++++||||+|||+||++|
T Consensus 274 ev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e-~~GSlT~i~T~LvetGs~mdd~I~ee~kg~~n~~ivLdR~lA~~r 351 (416)
T PRK09376 274 TVVPSSGKVLS-GGVDANALHRPKRFFGAARNIE-EGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLAEKR 351 (416)
T ss_pred hhhhccCCCCC-CCCChhHhhhhHHHHHhhcCCC-CCcceEEEEEEEecCCCCCCccHHHHHhhhcCceEeECHHHHhcC
Confidence 99999999999 9999999999999999999974 48999999999999 999999999999999999999999999999
Q ss_pred CCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHH
Q 011320 366 IYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 416 (488)
Q Consensus 366 ~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~ 416 (488)
|||||||++|.||.++.++ +++|++.+.++++.++.+++.+.+..+
T Consensus 352 ~fPAIDi~~S~sR~~~~l~-----~~~~~~~~~~lR~~l~~~~~~e~~e~~ 397 (416)
T PRK09376 352 IFPAIDINRSGTRKEELLL-----SPEELQKVWILRKILSPMDEVEAMEFL 397 (416)
T ss_pred CCCccCccccccccccccC-----CHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 9999999999999999755 478999998887777777666655544
No 58
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=4.4e-60 Score=501.79 Aligned_cols=251 Identities=19% Similarity=0.235 Sum_probs=227.3
Q ss_pred CCCCCCCCCCCcc-cceecceeeeeeeeecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEE
Q 011320 129 GSSINPSERTYPE-EMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAI 207 (488)
Q Consensus 129 ~~~~~~~~R~~~~-~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~ 207 (488)
..|++|++|.++. +|+.||+|+||+|+|||||||.+|||++|+|||+||.+|+++..+. .++..|
T Consensus 384 Ltp~~P~~R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n--------------~~~~~~ 449 (672)
T PRK12678 384 LTPLYPNERLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTN--------------NPECHL 449 (672)
T ss_pred CCCCChHHhcccccCcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhc--------------CCCeEE
Confidence 3688999999988 9999999999999999999999999999999999999999976421 133477
Q ss_pred EEEEecCchHHHHHHHHhhccCCCcceEE---EEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHH
Q 011320 208 VFAAMGVNMETAQFFKRDFEENGSMERVT---LFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (488)
Q Consensus 208 V~~~iGer~e~~~~~~~~l~~~~~~~~tv---vv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (488)
||++||||.|++.++ ++|| ||++|+|+||..|++++|+|+++||||+ |+|+|||||+|||||||+|
T Consensus 450 ivvLIgERpeEVtdm----------~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fr-e~G~dVlillDSlTR~ArA 518 (672)
T PRK12678 450 MVVLVDERPEEVTDM----------QRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLV-ELGKDVVVLLDSITRLGRA 518 (672)
T ss_pred EEEEEeCchhhHHHH----------HHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEEeCchHHHHH
Confidence 899999998888665 4555 9999999999999999999999999999 8999999999999999999
Q ss_pred HHHHHHhcCC-----CCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeec-CCCCCCCcccccccccceEEEee
Q 011320 285 LREVSAAREE-----VPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYID 358 (488)
Q Consensus 285 ~rEisl~~ge-----~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~-~dD~~dpi~d~~~~i~Dg~ivLs 358 (488)
+|||++..|+ +|+..+|||++|+.+++++|+ +||||+|+||+++ +++|++||++++++++||||+||
T Consensus 519 yrev~~~sGr~lSGG~d~~a~ypP~~F~~~AR~iE~-------gGSLTii~TvLVETGS~mDd~Ifeefkgtgn~elvLs 591 (672)
T PRK12678 519 YNLAAPASGRILSGGVDSTALYPPKRFFGAARNIEN-------GGSLTIIATALVETGSKMDEVIFEEFKGTGNMELKLD 591 (672)
T ss_pred HHHhhcCCCCccCCCCchhhccCccHHHHHHHhhcc-------CccceeeEEEEeccCCccCcchHHHHhhccCceeeEC
Confidence 9999999999 799999999999999999992 7999999999999 88999999999999999999999
Q ss_pred ccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHH
Q 011320 359 RQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 416 (488)
Q Consensus 359 r~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~ 416 (488)
|+||++||||||||++|.||.++.++ +++|++.+.+++..+..++..+.+..+
T Consensus 592 R~LAerrifPAIDv~~S~SR~ee~l~-----~~~e~~~~~~lRr~l~~~~~~~a~e~l 644 (672)
T PRK12678 592 RKLADKRIFPAVDVNASGTRKEELLL-----SPDELAIVHKLRRVLSGLDSQQAIDLL 644 (672)
T ss_pred HHHHhCCCCCccCCCcCccccchhhC-----CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999755 478999998888877776665555444
No 59
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=2.2e-54 Score=446.99 Aligned_cols=246 Identities=16% Similarity=0.218 Sum_probs=219.8
Q ss_pred cceecceeeeeeeeecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHH
Q 011320 142 EMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQF 221 (488)
Q Consensus 142 ~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~ 221 (488)
.+-..|+|+||.++|||+|||++|+|++|+|||+|+.+|++.... +..+.++++++||||.+++..
T Consensus 150 ~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~--------------nhfdv~v~VlLIgER~~EVtD 215 (415)
T TIGR00767 150 STEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR--------------NHPEVELIVLLIDERPEEVTD 215 (415)
T ss_pred CccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc--------------cCCceEEEEEEcCCCCccHHH
Confidence 344579999999999999999999999999999999999887531 122347899999999766666
Q ss_pred HHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCC
Q 011320 222 FKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGY 301 (488)
Q Consensus 222 ~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gy 301 (488)
+.+.+. ..||++|+|+||..|.++++.++++||||+ ++|+||+|++||+||||+|+|||++++||||+ +||
T Consensus 216 LqrsIl-------g~Vvast~d~p~~~~~~va~~v~e~Ae~~~-~~GkdVVLlIDEitR~arAqrei~~~~G~~~s-~G~ 286 (415)
T TIGR00767 216 MQRSVK-------GEVVASTFDEPASRHVQVAEMVIEKAKRLV-EHKKDVVILLDSITRLARAYNTVTPASGKVLS-GGV 286 (415)
T ss_pred HHHHhh-------ceEEEecCCCChHHHHHHHHHHHHHHHHHH-HcCCCeEEEEEChhHHHHHHHHhHhhcCCCCC-CCc
Confidence 666664 269999999999999999999999999999 89999999999999999999999999999998 999
Q ss_pred CCchhhhHHHHHHhhcccCCCCcceeEEeEEeec-CCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCccccc
Q 011320 302 PGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLM 380 (488)
Q Consensus 302 p~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~-~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~ 380 (488)
||++|+.+++|+||||++++ +||||+|+||+++ |+||+|||++++++++||||+|||+||++|||||||+++|.||.+
T Consensus 287 ~~~~~~~~~~~~~~a~~~~~-~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~~fPAidi~~S~sR~~ 365 (415)
T TIGR00767 287 DANALHRPKRFFGAARNIEE-GGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKE 365 (415)
T ss_pred ChhhhcccHHHHhhcCCCCC-CcchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCCCCCCcCcccccccch
Confidence 99999999999999999754 8999999999999 899999999999999999999999999999999999999999999
Q ss_pred ccccccccccccHHHHHHHHHHHHHccccHHHHHHH
Q 011320 381 KSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 416 (488)
Q Consensus 381 ~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~ 416 (488)
+.++ +++|.+.+.+++..++.++..+.+..+
T Consensus 366 ~~l~-----~~~~~~~~~~~r~~l~~~~~~~~~~~~ 396 (415)
T TIGR00767 366 ELLL-----TPEELQKIWVLRKIISPMDSIEAMEFL 396 (415)
T ss_pred hhcC-----CHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9755 478999998888877777666655444
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=1.4e-50 Score=399.94 Aligned_cols=240 Identities=17% Similarity=0.238 Sum_probs=209.9
Q ss_pred eeeeeeeeecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhc
Q 011320 148 ISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFE 227 (488)
Q Consensus 148 I~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~ 227 (488)
.|+||+|+|+|+|||++|||++|+|||||+.+++++... ...+.+++++++|+|..+..++.+.+
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~--------------~~fdv~~~v~vI~er~~ev~el~~~I- 68 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK--------------NHPEVYLIVLLIDERPEEVTDMQRSV- 68 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhcccc--------------ccCCeEEEEEEccCCCccHHHHHHHh-
Confidence 589999999999999999999999999999999886531 11233667777999855555555555
Q ss_pred cCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhh
Q 011320 228 ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYT 307 (488)
Q Consensus 228 ~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs 307 (488)
++++|++++++|+..|+++++.++++||||+ ++|++|++++|+++|||+|+||+++..|++| .+||||++|+
T Consensus 69 ------~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~ 140 (249)
T cd01128 69 ------KGEVIASTFDEPPERHVQVAEMVLEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALH 140 (249)
T ss_pred ------ccEEEEecCCCCHHHHHHHHHHHHHHHHHHH-HCCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhh
Confidence 6789999999999999999999999999999 8999999999999999999999999999999 6999999999
Q ss_pred hHHHHHHhhcccCCCCcceeEEeEEeec-CCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCccccccccccc
Q 011320 308 DLAQIYERAGRIEGRKGSITQIPILTMP-NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGE 386 (488)
Q Consensus 308 ~l~~l~ERag~~~~~~GSIT~i~~v~~~-~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~ 386 (488)
.+++++|||+... ++||||++||++++ ++|++||+.+++++++||||+|||+|+..|+||||||+.|.||.++.++
T Consensus 141 ~~~q~~~~Ar~~~-~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll~-- 217 (249)
T cd01128 141 KPKRFFGAARNIE-EGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELLL-- 217 (249)
T ss_pred hhHHHHHHhcCCC-CCCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhhC--
Confidence 9999999999863 48999999999999 6788889999999999999999999999999999999999999888643
Q ss_pred ccccccHHHHHHHHHHHHHccccHHHHHHH
Q 011320 387 GMTRRDHSDVSNQLYANYAIGKDVQAMKAV 416 (488)
Q Consensus 387 ~~~~~~h~~~~~~l~~~y~~~~~l~~~~~~ 416 (488)
+++|+..+.+++..+..+++++.+..+
T Consensus 218 ---~~~~~~~~~~~r~~~~~~~~~~~~~~~ 244 (249)
T cd01128 218 ---DPEELQRMWLLRRVLSDMDPIEAMEFL 244 (249)
T ss_pred ---CHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 467888887776666666666665443
No 61
>KOG1353 consensus F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2e-39 Score=311.74 Aligned_cols=319 Identities=24% Similarity=0.305 Sum_probs=276.2
Q ss_pred ccceeeEEEEEECCEEEEeccCCCCCCcEEEEEeCCCceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcCCeeeEe
Q 011320 17 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTP 96 (488)
Q Consensus 17 ~~~~~G~V~~I~G~li~v~g~~~~~igE~~~i~~~~g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg~~~~Vp 96 (488)
...+.|+|.+|-+.+..+.|+.++.-+|++++ +.| ++|.-+.++.+.+.+..|++..-++ .|..|..|+....||
T Consensus 17 ~leEtgrVLsIGdGIArV~GL~nvQAeEmvEF--ssG--lKgmalnle~~~vg~v~~g~d~~ik-eg~~VkrTgaIvDVp 91 (340)
T KOG1353|consen 17 DLEETGRVLSIGDGIARVYGLTNVQAEEMVEF--SSG--LKGMALNLEGENVGVVVFGEDSLIK-EGDTVKRTAAISDVP 91 (340)
T ss_pred chhhccceEEEcCceeeeecccccchHHHHhh--hcc--ccchhccccCCceEEEEEcCcceec-cCceEEeeeeeeccC
Confidence 34578999999999999999999889999988 345 4677788899999999999999998 599999999999999
Q ss_pred cCccccceEecCCCcccCCCCCCCCCceeeccCCCCCCCCCCCcccceecceeeeeeeeecccCcEEEeccCCCCChhHH
Q 011320 97 VSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 176 (488)
Q Consensus 97 vG~~lLGRVlD~lG~PlDg~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGI~aID~l~pig~Gqr~gIfg~~G~GKt~L 176 (488)
+|+.|||||.|++|+|+|+.+++...+.+ ...|..+.+|++||+|++|++.|||||||.+|.|..-+|||.|
T Consensus 92 vg~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTsl 163 (340)
T KOG1353|consen 92 PLKALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTSL 163 (340)
T ss_pred chHHHhhhhhhhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeeccCceEEEeccccCCceee
Confidence 99999999999999999999998765544 5689999999999999999999999999999999999999987
Q ss_pred HHH-HHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHH
Q 011320 177 AAQ-ICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRI 255 (488)
Q Consensus 177 l~~-i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~ 255 (488)
.-. |.++.. -|.- .+.+.+.+|||+.||++++.+..+...|.+.++|++|++|++|++
T Consensus 164 a~dTI~nqk~--------~N~~-~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a~~y~ivv~atas------------ 222 (340)
T KOG1353|consen 164 AIDTILNQKR--------GNEC-LDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADAMEYSIVVAATAS------------ 222 (340)
T ss_pred eehhhhhhhh--------hccc-ccccceEEEEEEecccchhHHHHHHHHHHhcCCceEEEEEEeecc------------
Confidence 432 333221 0111 113456799999999999999999999999999999999999988
Q ss_pred HHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeec
Q 011320 256 ALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMP 335 (488)
Q Consensus 256 a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~ 335 (488)
.
T Consensus 223 -------------------------------------------------------------------------------q 223 (340)
T KOG1353|consen 223 -------------------------------------------------------------------------------Q 223 (340)
T ss_pred -------------------------------------------------------------------------------c
Confidence 7
Q ss_pred CCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCcccccccccccccccccHHHHHHHHHHHHHccccHHHHHH
Q 011320 336 NDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKA 415 (488)
Q Consensus 336 ~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~~~~~~~h~~~~~~l~~~y~~~~~l~~~~~ 415 (488)
++|.+.+||.++.|| ||||+|..+|+.+|+.||||+..|+||++..++-+ .-.+++..++..+++++++..+.+
T Consensus 224 ~gdvsayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvgsaaq~k-----amkqvag~~klelaq~revaafaq 297 (340)
T KOG1353|consen 224 AGDVSAYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTK-----AMKQVAGSLKLELAQYREVAAFAQ 297 (340)
T ss_pred ccceeeecccceeee-cchhHHHHHHHHhccchhheeeeEeeeccchHHHH-----HHHHHhhhhhhHHHHHHHHHHHHH
Confidence 889999999999999 99999999999999999999999999999986643 446777788999999999999988
Q ss_pred HhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCCCHHHHHHH
Q 011320 416 VVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDL 457 (488)
Q Consensus 416 ~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~~~~~~~~~ 457 (488)
+ |.| |+..-...|.+..++. ..|+|+.|.|...++++..
T Consensus 298 f-gsd-lda~tq~~l~rg~rlt-ellkq~qy~p~~~e~qv~~ 336 (340)
T KOG1353|consen 298 F-GSD-LDAATQQLLNRGVRLT-ELLKQGQYAPLAIEEQVAV 336 (340)
T ss_pred h-ccc-ccHHHHHHHHhhhHHH-HHHhcCCCCCcchhhheee
Confidence 5 654 5666678899999995 8999999999999887643
No 62
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=3.4e-35 Score=292.72 Aligned_cols=238 Identities=17% Similarity=0.242 Sum_probs=205.0
Q ss_pred eeeeeeeeecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhc
Q 011320 148 ISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFE 227 (488)
Q Consensus 148 I~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~ 227 (488)
-|+||.+.|||||||-+|.+|+..|||+|++.||+...+ +.+....++.+|.||.|++.++++..+
T Consensus 161 ~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~--------------N~Pe~~LiVLLIDERPEEVTdmqrsV~ 226 (422)
T COG1158 161 TRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITT--------------NHPECELIVLLIDERPEEVTDMQRSVK 226 (422)
T ss_pred hHHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhc--------------CCCceEEEEEEecCCchHHHHHHHhhc
Confidence 489999999999999999999999999999999887542 224558888999999999999988876
Q ss_pred cCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhh
Q 011320 228 ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYT 307 (488)
Q Consensus 228 ~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs 307 (488)
+ -||++|.|+||..+...+...+.-|.... ++|+||++++||+||+|+||+-+.-..|+..+ .|--+.-+.
T Consensus 227 g-------eViaSTFDepp~~HvqVAE~viEkAKRlV-E~~kDVVILLDSITRLaRAYN~v~P~SGkvLs-GGvD~nAL~ 297 (422)
T COG1158 227 G-------EVVASTFDEPPSRHVQVAEMVIEKAKRLV-EHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALH 297 (422)
T ss_pred c-------eEEeecCCCcchhhHHHHHHHHHHHHHHH-HcCCcEEEEehhHHHHHHHhcccCCCCCCeec-CCcChhhhc
Confidence 4 39999999999999999999999999999 99999999999999999999999888888776 466667777
Q ss_pred hHHHHHHhhcccCCCCcceeEEeEEeecC-CCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCccccccccccc
Q 011320 308 DLAQIYERAGRIEGRKGSITQIPILTMPN-DDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKSAIGE 386 (488)
Q Consensus 308 ~l~~l~ERag~~~~~~GSIT~i~~v~~~~-dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~~~~~ 386 (488)
.-.+|+--|.++++ |||+|++.|.+++. .-|+|-|.+++++.-+..++|||+||++++|||||+.+|-+|--+.+++
T Consensus 298 ~PKrFFGAARNIEe-GGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKEeLLl~- 375 (422)
T COG1158 298 RPKRFFGAARNIEE-GGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLS- 375 (422)
T ss_pred Cchhhhhhhhcccc-CcchhhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhcccccceecccCCcchHhhcCC-
Confidence 77889998999864 99999999999995 5689999999999999999999999999999999999999999987654
Q ss_pred ccccccHHHHHHHHHHHHHccccHHHHH
Q 011320 387 GMTRRDHSDVSNQLYANYAIGKDVQAMK 414 (488)
Q Consensus 387 ~~~~~~h~~~~~~l~~~y~~~~~l~~~~ 414 (488)
+++.+-.-.+++.+....+...+.
T Consensus 376 ----~~~l~k~w~lRr~l~~md~~~a~e 399 (422)
T COG1158 376 ----PDELQKMWVLRRILSPMDEIDAIE 399 (422)
T ss_pred ----HHHHHHHHHHHHHhcCCChHHHHH
Confidence 455554445555555444444433
No 63
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.07 E-value=8.4e-09 Score=92.76 Aligned_cols=160 Identities=28% Similarity=0.443 Sum_probs=116.8
Q ss_pred EEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCC
Q 011320 163 IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLA 242 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~ 242 (488)
+.|+|++|+|||+++..++.+... .+..++|.-..+......+-...+...+..++..++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~----------------~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT----------------KGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATA 65 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh----------------cCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCC
Confidence 579999999999999999887631 1125677777765332222112233334455666666666
Q ss_pred CCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCC
Q 011320 243 NDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGR 322 (488)
Q Consensus 243 ~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~ 322 (488)
+........ .++.++. ...+..++++|+++.+++...+. ..+++..+...+..|++++.
T Consensus 66 ~~~~~~~~~------~~~~~~~-~~~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~----- 124 (165)
T cd01120 66 DDPAAARLL------SKAERLR-ERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERAR----- 124 (165)
T ss_pred CCCcHHHHH------HHHHHHH-hCCCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHh-----
Confidence 655544433 5566777 67788899999999999877653 34677788889999999885
Q ss_pred CcceeEEeEEeecCCCCCCC----cccccccccceEEEeec
Q 011320 323 KGSITQIPILTMPNDDITHP----TPDLTGYITEGQIYIDR 359 (488)
Q Consensus 323 ~GSIT~i~~v~~~~dD~~dp----i~d~~~~i~Dg~ivLsr 359 (488)
...+|.+.+.....++..+| ....+..+.|+-|+|+|
T Consensus 125 ~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 125 KGGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred cCCceEEEEEecCCccccCcccccCccceeeecceEEEEeC
Confidence 35899999999998888888 88889999999999986
No 64
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=98.86 E-value=5.8e-09 Score=91.40 Aligned_cols=85 Identities=31% Similarity=0.465 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHccccHHHHHHHhCCcCCCHHHHHHHHHHhHHHHHHhccCCCCCC-------C-HHHHHHHHHHHHH---
Q 011320 395 DVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDSR-------N-IFQSLDLAWTLLR--- 463 (488)
Q Consensus 395 ~~~~~l~~~y~~~~~l~~~~~~~G~d~l~~~~~~~l~~~~~i~~~fL~Q~~~~~~-------~-~~~~~~~~~~~~~--- 463 (488)
+++.+++..|+++++|+++.+++|.+.|+++++..+.++++|++ ||+|++|++. . +.+++..+|++++
T Consensus 2 ~v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e-~LkQ~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~ 80 (113)
T PF00306_consen 2 KVAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE-FLKQNAFDPVPLEKQYVMILEETIDLFYAILRGKF 80 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH-HT-BSTTTTTSSHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HcCCCCCCCCcCcchhhhHHHHHHHHHHHHHhCCC
Confidence 57889999999999999999999999999999999999999985 9999999999 7 7778888888888
Q ss_pred -hcchhhhcCCChhhHhh
Q 011320 464 -IFPRELLHRIPGKTLDQ 480 (488)
Q Consensus 464 -~~~~~~~~~~~~~~~~~ 480 (488)
.++.+.+.++....++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~ 98 (113)
T PF00306_consen 81 DDIPEEELEKIETKDIEK 98 (113)
T ss_dssp TTS-GGGHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhhHHHHH
Confidence 66777777776666653
No 65
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.80 E-value=1.8e-08 Score=80.20 Aligned_cols=66 Identities=39% Similarity=0.569 Sum_probs=57.6
Q ss_pred EEEEECCEEEEeccCC--CCCCcEEEEEeCC-CceeEEEEEEEECCeEEEEEccCCCCCccCCCEEEEcC
Q 011320 24 VTGVAGPLVILDKVKG--PKYYEIVNIRLGD-GTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTG 90 (488)
Q Consensus 24 V~~I~G~li~v~g~~~--~~igE~~~i~~~~-g~~~~geVv~~~~~~~~l~~~~~t~Gl~~~G~~V~~tg 90 (488)
|++|.|+++++++... +.+++.|.++..+ +....|+|++|+++.+.+|+|++++||+. |++|.+||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~-G~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFGNGVLGEVVGLDEDEVRLQVFGSTDGLSR-GTEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEETTEEEEEEEEEETTEEEEEESSSGTTSBT-TCEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccceeeeeeeecccCccEEEEEEecCCCCCCC-CCEEEcCc
Confidence 6899999999966554 6789999987444 56789999999999999999999999996 99999986
No 66
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.78 E-value=0.00027 Score=68.08 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=36.5
Q ss_pred eecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 144 l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.|||..+|-++. +.+|.-+.|+|++|+|||+|+.+++.+.
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4799999999885 7789999999999999999999987765
No 67
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.62 E-value=0.0011 Score=66.05 Aligned_cols=184 Identities=17% Similarity=0.210 Sum_probs=107.4
Q ss_pred cceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHH
Q 011320 142 EMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETA 219 (488)
Q Consensus 142 ~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~ 219 (488)
+.+.|||.-+|-++- +-+|..+.|.|++|+|||++..+.+.+.. . .+.-|+|+..-|..++.
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~--------~--------~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGA--------R--------EGEPVLYVSTEESPEEL 66 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHH--------h--------cCCcEEEEEecCCHHHH
Confidence 457899999998888 78999999999999999999988766642 2 12379999999986554
Q ss_pred HHHHHhh-------ccCCCcceEEEEEeCCCCCHH---H--HHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHH
Q 011320 220 QFFKRDF-------EENGSMERVTLFLNLANDPTI---E--RIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALRE 287 (488)
Q Consensus 220 ~~~~~~l-------~~~~~~~~tvvv~~t~~~~~~---~--r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rE 287 (488)
......+ .+.+ +-.++-..+...+.. . -.......-.|-+.+. +.+ ...+++||++.+......
T Consensus 67 ~~~~~~~g~d~~~~~~~g--~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~-~~~-~~~~ViDsi~~~~~~~~~ 142 (260)
T COG0467 67 LENARSFGWDLEVYIEKG--KLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVE-KEG-ADRVVIDSITELTLYLND 142 (260)
T ss_pred HHHHHHcCCCHHHHhhcC--CEEEEEccccccccccccccCCccHHHHHHHHHHHHH-HhC-CCEEEEeCCchHhhhcCc
Confidence 3333222 2222 112222222222211 1 1234446667777777 566 677889999976544421
Q ss_pred HHHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCC
Q 011320 288 VSAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQI 366 (488)
Q Consensus 288 isl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~ 366 (488)
|. .....+..|.... .+.| +|++.+...+.+...+. ....++.||.|.|+....+.+.
T Consensus 143 --------~~------~~r~~~~~l~~~~----~~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~~~~ 200 (260)
T COG0467 143 --------PA------LVRRILLLLKRFL----KKLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIEGGG 200 (260)
T ss_pred --------hH------HHHHHHHHHHHHH----HhCC-CEEEEEecccccCCCcc--ceEEEEEEEEEEEeeecccCce
Confidence 10 1112222222222 2234 77776654332222221 1234489999999997765333
No 68
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.59 E-value=0.00017 Score=61.86 Aligned_cols=145 Identities=18% Similarity=0.130 Sum_probs=79.7
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEE
Q 011320 159 RGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLF 238 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv 238 (488)
+++.+.|+|++|+|||+++..++++... . ...++++-+....+....... ..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~------------~~ 52 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGP-------P---------GGGVIYIDGEDILEEVLDQLL------------LI 52 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCC-------C---------CCCEEEECCEEccccCHHHHH------------hh
Confidence 4788999999999999999999887642 0 002333333332222111110 11
Q ss_pred EeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcc
Q 011320 239 LNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGR 318 (488)
Q Consensus 239 ~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~ 318 (488)
....+.....+........+.|++.. ..++++|++.++.............. ...+....
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~viiiDei~~~~~~~~~~~~~~~~~-------------~~~~~~~~-- 112 (148)
T smart00382 53 IVGGKKASGSGELRLRLALALARKLK-----PDVLILDEITSLLDAEQEALLLLLEE-------------LRLLLLLK-- 112 (148)
T ss_pred hhhccCCCCCHHHHHHHHHHHHHhcC-----CCEEEEECCcccCCHHHHHHHHhhhh-------------hHHHHHHH--
Confidence 11222233344445556666666443 58999999999887776654443332 11111111
Q ss_pred cCCCCcceeEEeEEeecCCCCCCCcccccccccceEEEee
Q 011320 319 IEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYID 358 (488)
Q Consensus 319 ~~~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLs 358 (488)
....+..+.+... ...+.+...+..++.++.+.
T Consensus 113 ---~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 113 ---SEKNLTVILTTND----EKDLGPALLRRRFDRRIVLL 145 (148)
T ss_pred ---hcCCCEEEEEeCC----CccCchhhhhhccceEEEec
Confidence 1345566666543 34555556666777777654
No 69
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.56 E-value=0.00032 Score=68.09 Aligned_cols=175 Identities=14% Similarity=0.161 Sum_probs=95.3
Q ss_pred eecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHH-HH
Q 011320 144 IQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET-AQ 220 (488)
Q Consensus 144 l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~-~~ 220 (488)
..|||..+|-++ -+-+|.-++|.|++|+|||+|..+++.+... . .+..|+|+..-|..+. .+
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~------~---------~ge~vlyvs~ee~~~~l~~ 65 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLK------N---------FGEKVLYVSFEEPPEELIE 65 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------H---------HT--EEEEESSS-HHHHHH
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhh------h---------cCCcEEEEEecCCHHHHHH
Confidence 369999999998 6889999999999999999998887655421 1 0116788888776433 33
Q ss_pred HHHHhhc-------cCCCcceEEEEEeCCCCCHH-HHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhc
Q 011320 221 FFKRDFE-------ENGSMERVTLFLNLANDPTI-ERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAR 292 (488)
Q Consensus 221 ~~~~~l~-------~~~~~~~tvvv~~t~~~~~~-~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ 292 (488)
.+. .+. .++ +- .+......... ...-.-...-.+.+... +.+. -.+++||++-+ .+.
T Consensus 66 ~~~-s~g~d~~~~~~~g---~l-~~~d~~~~~~~~~~~~~~~l~~~i~~~i~-~~~~-~~vVIDsls~l-~~~------- 130 (226)
T PF06745_consen 66 NMK-SFGWDLEEYEDSG---KL-KIIDAFPERIGWSPNDLEELLSKIREAIE-ELKP-DRVVIDSLSAL-LLY------- 130 (226)
T ss_dssp HHH-TTTS-HHHHHHTT---SE-EEEESSGGGST-TSCCHHHHHHHHHHHHH-HHTS-SEEEEETHHHH-TTS-------
T ss_pred HHH-HcCCcHHHHhhcC---CE-EEEecccccccccccCHHHHHHHHHHHHH-hcCC-CEEEEECHHHH-hhc-------
Confidence 221 221 111 23 33333222110 01111122334555555 4444 58899999887 221
Q ss_pred CCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCCCCCCccccccc-ccceEEEeeccc
Q 011320 293 EEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGY-ITEGQIYIDRQL 361 (488)
Q Consensus 293 ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD~~dpi~d~~~~-i~Dg~ivLsr~L 361 (488)
.. |..+...+-.|+....+ .| +|++.+...+.+..... ...... +.||-|.|+..-
T Consensus 131 -~~------~~~~r~~l~~l~~~l~~----~~-~t~llt~~~~~~~~~~~-~~~i~~~l~D~vI~L~~~~ 187 (226)
T PF06745_consen 131 -DD------PEELRRFLRALIKFLKS----RG-VTTLLTSEMPSGSEDDG-TFGIEHYLADGVIELRYEE 187 (226)
T ss_dssp -SS------GGGHHHHHHHHHHHHHH----TT-EEEEEEEEESSSSSSSS-STSHHHHHSSEEEEEEEEE
T ss_pred -CC------HHHHHHHHHHHHHHHHH----CC-CEEEEEEccccCccccc-ccchhhhcccEEEEEEEEe
Confidence 11 11233445566666532 23 57777776554221111 122333 899999998764
No 70
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.47 E-value=0.0015 Score=71.45 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=98.4
Q ss_pred cccceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchH
Q 011320 140 PEEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNME 217 (488)
Q Consensus 140 ~~~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e 217 (488)
..+.+.|||..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+... .+..++|...-+..+
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~----------------~g~~~~yis~e~~~~ 314 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR----------------RGERCLLFAFEESRA 314 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh----------------CCCcEEEEEecCCHH
Confidence 45668899999999875 788999999999999999999888765421 011566666555533
Q ss_pred HHHHHHHhhc-------cCCCcceEEEEEe-CCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHH
Q 011320 218 TAQFFKRDFE-------ENGSMERVTLFLN-LANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVS 289 (488)
Q Consensus 218 ~~~~~~~~l~-------~~~~~~~tvvv~~-t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEis 289 (488)
....-...+. ..+ +..++.. +......+.. ..+.+... +.+.+ ++|+||+|-+..+..
T Consensus 315 ~i~~~~~~~g~~~~~~~~~g---~l~i~~~~~~~~~~~~~~------~~i~~~i~-~~~~~-~vVIDslt~l~~~~~--- 380 (509)
T PRK09302 315 QLIRNARSWGIDLEKMEEKG---LLKIICARPESYGLEDHL------IIIKREIE-EFKPS-RVAIDPLSALARGGS--- 380 (509)
T ss_pred HHHHHHHHcCCChHHHhhcC---CceeecCCcccCCHHHHH------HHHHHHHH-HcCCC-EEEEcCHHHHHHhCC---
Confidence 2211111111 122 1122221 2222222211 23333333 33444 789999998864321
Q ss_pred HhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCCCCCCcc-cccccccceEEEeeccc
Q 011320 290 AAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDITHPTP-DLTGYITEGQIYIDRQL 361 (488)
Q Consensus 290 l~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD~~dpi~-d~~~~i~Dg~ivLsr~L 361 (488)
+ ..+-..+..|...+.+ -.+|.+.|..++...-.++.. ..+.++.|+-|.|+..-
T Consensus 381 ------~------~~~~~~l~~l~~~~k~-----~~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~~ 436 (509)
T PRK09302 381 ------L------NEFRQFVIRLTDYLKS-----EEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVE 436 (509)
T ss_pred ------H------HHHHHHHHHHHHHHHh-----CCCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEee
Confidence 0 0112233344444422 236888887666532223322 24678999999998754
No 71
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.29 E-value=0.004 Score=62.28 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=35.5
Q ss_pred eecceeeeeeee----------------ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 144 IQTGISTIDVMN----------------SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 144 l~TGI~aID~l~----------------pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.|||+.+|-++ -+-+|.-+.|.|++|+|||++..+++.+.
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999886 35689999999999999999999987764
No 72
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.23 E-value=0.0013 Score=64.37 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=38.0
Q ss_pred ccceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 141 EEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+.|||..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3568999999999874 6789999999999999999998886553
No 73
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.01 E-value=0.0027 Score=61.71 Aligned_cols=123 Identities=14% Similarity=0.164 Sum_probs=69.4
Q ss_pred eecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc--hHHH
Q 011320 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--META 219 (488)
Q Consensus 144 l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~e~~ 219 (488)
+.||++.+|-++. +.+|..+.|.|++|+|||+|+.+++.+.... + +..+.+..++|.-..+. .+..
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~------~----~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLP------I----ELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCc------c----ccCCCCccEEEEeCCCCcCHHHH
Confidence 4799999998875 7899999999999999999999987653210 0 00011125666554442 2222
Q ss_pred HHHHHhhc--cCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHH
Q 011320 220 QFFKRDFE--ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (488)
Q Consensus 220 ~~~~~~l~--~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (488)
..+.+.+. ...++++-.++...+ . ..... .-..+-+.+. +.++--++++||++.+..
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~~~~--~--~~l~~--~l~~l~~~l~-~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 71 VQIAERFGLDPEEVLDNIYVARAYN--S--DHQLQ--LLEELEAILI-ESSRIKLVIVDSVTALFR 129 (235)
T ss_pred HHHHHHhccChHhHhcCEEEEecCC--H--HHHHH--HHHHHHHHHh-hcCCeeEEEEeCcHHHHH
Confidence 22222211 123455544443222 1 11111 1122334455 444777999999998764
No 74
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.98 E-value=0.0027 Score=61.30 Aligned_cols=41 Identities=24% Similarity=0.414 Sum_probs=36.6
Q ss_pred eecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 144 IQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 144 l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+.
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 479999999887 47889999999999999999999988765
No 75
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.98 E-value=0.004 Score=63.62 Aligned_cols=126 Identities=14% Similarity=0.162 Sum_probs=73.6
Q ss_pred cceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc--hH
Q 011320 142 EMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--ME 217 (488)
Q Consensus 142 ~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~e 217 (488)
..+.||++.+|.++. +-+|.-+.|+|++|+|||+|+.+++.++.... +..+.+..+||+-.-+. .+
T Consensus 75 ~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~----------~~g~~~~~~~yi~te~~f~~~ 144 (310)
T TIGR02236 75 GKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPE----------EKGGLGGKAVYIDTENTFRPE 144 (310)
T ss_pred CeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCc----------ccCCCcceEEEEECCCCCCHH
Confidence 346799999998876 66899999999999999999999877653100 00011126788887663 33
Q ss_pred HHHHHHHhhc--cCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeE-EEEEcchhhHHHH
Q 011320 218 TAQFFKRDFE--ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHV-LVILTDMSSYADA 284 (488)
Q Consensus 218 ~~~~~~~~l~--~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~V-lli~Dsltr~a~A 284 (488)
....+.+.+. ....+++..++...+.+ + .. ...-.+.+++. +.+..+ ++|+||++-+-+.
T Consensus 145 rl~~~~~~~gl~~~~~~~~i~i~~~~~~~-~--~~---~lld~l~~~i~-~~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 145 RIMQMAEARGLDPDEVLKNIYVARAYNSN-H--QM---LLVEKAEDLIK-ELNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred HHHHHHHHcCCCHHHHhhceEEEecCCHH-H--HH---HHHHHHHHHHH-hcCCCceEEEEecchHhhhH
Confidence 3322222221 11124443343332222 2 11 12234667776 444333 8999999987543
No 76
>PRK04328 hypothetical protein; Provisional
Probab=96.96 E-value=0.011 Score=58.63 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=46.9
Q ss_pred ceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHH
Q 011320 143 MIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (488)
Q Consensus 143 ~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (488)
.+.|||..+|-++. +-+|.-+.|.|++|+|||+|..+++.+.-. .+..++|+..-|..+.
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~----------------~ge~~lyis~ee~~~~ 65 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------------MGEPGVYVALEEHPVQ 65 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh----------------cCCcEEEEEeeCCHHH
Confidence 47899999999875 558999999999999999998887665311 1126889888887544
No 77
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.95 E-value=0.0028 Score=61.47 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=38.3
Q ss_pred ccceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 141 EEMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++.+.|||..+|-++ -+-+|.-+.|.|++|+|||+++.+++.+.
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999887 46788999999999999999998887764
No 78
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.94 E-value=0.012 Score=64.15 Aligned_cols=188 Identities=12% Similarity=0.068 Sum_probs=107.2
Q ss_pred Ccccceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCch
Q 011320 139 YPEEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM 216 (488)
Q Consensus 139 ~~~~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~ 216 (488)
...+.+.|||..+|-++- +.+|.-+.|.|++|+|||+|+.+++.+... .+..|+|+.--|..
T Consensus 240 ~~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~----------------~ge~~~y~s~eEs~ 303 (484)
T TIGR02655 240 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA----------------NKERAILFAYEESR 303 (484)
T ss_pred ccccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH----------------CCCeEEEEEeeCCH
Confidence 356679999999998874 789999999999999999999888776521 11268888877764
Q ss_pred HHHHHHHHhhccCCC-----c-c-eEEEEE-eCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHH
Q 011320 217 ETAQFFKRDFEENGS-----M-E-RVTLFL-NLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREV 288 (488)
Q Consensus 217 e~~~~~~~~l~~~~~-----~-~-~tvvv~-~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEi 288 (488)
+.. .+.+..-|. . + +-.++. .+....+.. .+-.+-+... +.+.+ .+++||++-+..+..+
T Consensus 304 ~~i---~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~------~~~~i~~~i~-~~~~~-~vvIDsi~~~~~~~~~- 371 (484)
T TIGR02655 304 AQL---LRNAYSWGIDFEEMEQQGLLKIICAYPESAGLED------HLQIIKSEIA-DFKPA-RIAIDSLSALARGVSN- 371 (484)
T ss_pred HHH---HHHHHHcCCChHHHhhCCcEEEEEcccccCChHH------HHHHHHHHHH-HcCCC-EEEEcCHHHHHHhcCH-
Confidence 432 122221111 1 1 122322 222222222 1222223333 33444 6799999988654311
Q ss_pred HHhcCCCCCCCCCCCchhhhHHHHHHhhcccCCCCcceeEEeEEeecC--CCCCCCcc-cccccccceEEEeeccccccC
Q 011320 289 SAAREEVPGRRGYPGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPN--DDITHPTP-DLTGYITEGQIYIDRQLQNRQ 365 (488)
Q Consensus 289 sl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~--dD~~dpi~-d~~~~i~Dg~ivLsr~La~~g 365 (488)
+ .+-..+.+|.+-+. .-.||.+.|..+++ +.. +++ ..+-++.|+-|+|...-.+..
T Consensus 372 ----------~----~~r~~~~~l~~~lk-----~~~it~~~t~~~~~~~~~~--~~~~~~~s~l~D~ii~l~~~e~~g~ 430 (484)
T TIGR02655 372 ----------N----AFRQFVIGVTGYAK-----QEEITGFFTNTSDQFMGSH--SITDSHISTITDTILMLQYVEIRGE 430 (484)
T ss_pred ----------H----HHHHHHHHHHHHHh-----hCCCeEEEeecccccccCC--ccCCCCeeEeeeEEEEEEEEecCCE
Confidence 0 01112334444332 23578888876664 322 333 245679999999876655444
Q ss_pred CCCCCcCCCC
Q 011320 366 IYPPINVLPS 375 (488)
Q Consensus 366 ~yPAID~l~S 375 (488)
..-+|-++++
T Consensus 431 ~~r~i~V~K~ 440 (484)
T TIGR02655 431 MSRAINVFKM 440 (484)
T ss_pred EEEEEEEEEc
Confidence 4445555554
No 79
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.89 E-value=0.0024 Score=65.93 Aligned_cols=116 Identities=19% Similarity=0.321 Sum_probs=72.1
Q ss_pred cceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHH
Q 011320 142 EMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (488)
Q Consensus 142 ~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (488)
+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+..+ .+..|+|.-.=+..+.
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~----------------~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK----------------AGGTAAFIDAEHALDP 97 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----------------cCCcEEEEcccchhHH
Confidence 468899999999987 668899999999999999998887666431 0114555543332221
Q ss_pred HHHHHHhhccCCC-cceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHH
Q 011320 219 AQFFKRDFEENGS-MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSA 290 (488)
Q Consensus 219 ~~~~~~~l~~~~~-~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl 290 (488)
+ ..+.+ |+ +++ +++ ...+. .++ ++.+++.+- .++.--++++||++.+.. ..|+..
T Consensus 98 -~-~a~~l---Gvd~~~-l~v-~~p~~--~eq------~l~~~~~li-~~~~~~lIVIDSv~al~~-~~E~e~ 153 (321)
T TIGR02012 98 -V-YARKL---GVDIDN-LLV-SQPDT--GEQ------ALEIAETLV-RSGAVDIIVVDSVAALVP-KAEIEG 153 (321)
T ss_pred -H-HHHHc---CCCHHH-eEE-ecCCC--HHH------HHHHHHHHh-hccCCcEEEEcchhhhcc-chhhcc
Confidence 1 12222 32 233 233 33322 233 345566665 567777999999998875 334433
No 80
>PRK09354 recA recombinase A; Provisional
Probab=96.84 E-value=0.0025 Score=66.45 Aligned_cols=121 Identities=16% Similarity=0.279 Sum_probs=76.4
Q ss_pred ccceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchH
Q 011320 141 EEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNME 217 (488)
Q Consensus 141 ~~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e 217 (488)
.+.+.||+..+|.++. +-+|.-+-|+|++|+|||+|+.+++.++.. .+..|+|.-.=+..+
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~----------------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK----------------AGGTAAFIDAEHALD 101 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH----------------cCCcEEEECCccchH
Confidence 4568899999999988 557888899999999999999887766531 112566666544433
Q ss_pred HHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcC
Q 011320 218 TAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAARE 293 (488)
Q Consensus 218 ~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~g 293 (488)
. ++ .+.+.-. +++ +++ .+.+. .++ ++.+++.+- ..+.--++++||++-+.. ..|+....|
T Consensus 102 ~-~~-a~~lGvd--ld~-lli-~qp~~--~Eq------~l~i~~~li-~s~~~~lIVIDSvaaL~~-~~E~eg~~g 161 (349)
T PRK09354 102 P-VY-AKKLGVD--IDN-LLV-SQPDT--GEQ------ALEIADTLV-RSGAVDLIVVDSVAALVP-KAEIEGEMG 161 (349)
T ss_pred H-HH-HHHcCCC--HHH-eEE-ecCCC--HHH------HHHHHHHHh-hcCCCCEEEEeChhhhcc-hhhhcCCcc
Confidence 2 22 2233211 344 233 33322 333 345666666 568888999999998774 234543333
No 81
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.75 E-value=0.018 Score=55.84 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=35.8
Q ss_pred eecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 144 l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.|||..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~ 44 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKG 44 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHH
Confidence 5799999999874 6689999999999999999998877653
No 82
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.73 E-value=0.0026 Score=65.83 Aligned_cols=111 Identities=17% Similarity=0.307 Sum_probs=71.4
Q ss_pred ccceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchH
Q 011320 141 EEMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNME 217 (488)
Q Consensus 141 ~~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e 217 (488)
.+.+.||+..+|.++. +-+|.-+-|+|++|+|||+|+.+++.+... . +..|+|+-.=+..+
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~------~----------g~~~vyId~E~~~~ 96 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK------L----------GGTVAFIDAEHALD 96 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH------c----------CCCEEEECccccHH
Confidence 3468999999999987 567888999999999999999888766531 0 11456655433322
Q ss_pred HHHHHHHhhccCCC-cceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHH
Q 011320 218 TAQFFKRDFEENGS-MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (488)
Q Consensus 218 ~~~~~~~~l~~~~~-~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (488)
. ++ .+.+ |+ +++ ++++ ..+. .++ ++.+++.+. ..+.-.++|+||++-+..
T Consensus 97 ~-~~-a~~l---Gvd~~~-l~v~-~p~~--~eq------~l~i~~~li-~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 97 P-VY-AKKL---GVDLDN-LLIS-QPDT--GEQ------ALEIADSLV-RSGAVDLIVVDSVAALVP 147 (325)
T ss_pred H-HH-HHHc---CCCHHH-heec-CCCC--HHH------HHHHHHHHH-hccCCCEEEEcchHhhcc
Confidence 1 11 2223 22 233 2333 3332 222 345667776 577888999999998874
No 83
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.71 E-value=0.0095 Score=62.21 Aligned_cols=127 Identities=14% Similarity=0.131 Sum_probs=74.5
Q ss_pred cccceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecC--c
Q 011320 140 PEEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV--N 215 (488)
Q Consensus 140 ~~~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe--r 215 (488)
....+.||++.+|-++. +-+|.=.-|+|++|+|||+|+.+++-++.... +..+.+..++|.-.-+ +
T Consensus 104 ~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~----------~~gg~~~~vvyIdTE~tF~ 173 (344)
T PLN03187 104 SVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPT----------EMGGGNGKVAYIDTEGTFR 173 (344)
T ss_pred cCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcch----------hhCCCCceEEEEEcCCCCC
Confidence 45568899999999876 66888899999999999999999876543100 0111122677777755 3
Q ss_pred hHHHHHHHHhhc--cCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHH
Q 011320 216 METAQFFKRDFE--ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (488)
Q Consensus 216 ~e~~~~~~~~l~--~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (488)
.+....+-+.++ ...++++ +.+ .... ......... ..+.+.+. +. .-=|+|+||++-+.++
T Consensus 174 peRl~~ia~~~g~d~~~~l~~-I~~-~~~~-~~e~~~~~l---~~l~~~i~-~~-~~~LvVIDSital~r~ 236 (344)
T PLN03187 174 PDRIVPIAERFGMDADAVLDN-IIY-ARAY-TYEHQYNLL---LGLAAKMA-EE-PFRLLIVDSVIALFRV 236 (344)
T ss_pred HHHHHHHHHHcCCChhhhcCe-EEE-ecCC-CHHHHHHHH---HHHHHHHH-hc-CCCEEEEeCcHHhhhc
Confidence 444443333332 2223555 222 2222 222222211 23344454 33 3447899999987554
No 84
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.60 E-value=0.014 Score=57.30 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=45.4
Q ss_pred eecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchH
Q 011320 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNME 217 (488)
Q Consensus 144 l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e 217 (488)
+.|||..+|-++. +-+|.-+.|.|++|+|||+|..+++.+.- . .+..++|+..-|..+
T Consensus 3 i~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~--------~--------~ge~~lyvs~ee~~~ 62 (237)
T TIGR03877 3 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL--------Q--------MGEPGIYVALEEHPV 62 (237)
T ss_pred cccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH--------H--------cCCcEEEEEeeCCHH
Confidence 6799999998764 77999999999999999999988765531 1 122688888887644
No 85
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.53 E-value=0.067 Score=52.59 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=30.8
Q ss_pred eecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 144 l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+++.-+|-++. +-+|..++|.|++|+|||+|+.+++.+
T Consensus 6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~ 47 (230)
T PRK08533 6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYG 47 (230)
T ss_pred EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3466777776654 667999999999999999997555443
No 86
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.45 E-value=0.021 Score=61.86 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=38.1
Q ss_pred cceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 142 EMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.|||.-+|-++ -+.+|+-+.|.|++|+|||+|+.+++.+.
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~ 118 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQL 118 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35889999999887 48899999999999999999999987664
No 87
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.40 E-value=0.012 Score=60.57 Aligned_cols=126 Identities=13% Similarity=0.163 Sum_probs=72.9
Q ss_pred ccceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc--h
Q 011320 141 EEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--M 216 (488)
Q Consensus 141 ~~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~ 216 (488)
...+.||++.+|-++- +-+|.=+-|+|++|+|||+|+.+++-++.... +..+.+..++|+-.-+. .
T Consensus 75 ~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~----------~~gg~~~~vvYIdtE~~f~~ 144 (313)
T TIGR02238 75 VLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPR----------EMGGGNGKVAYIDTEGTFRP 144 (313)
T ss_pred CceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcch----------hhcCCCCeEEEEEcCCCCCH
Confidence 4568899999998875 67899999999999999999988876542100 00111225777765552 3
Q ss_pred HHHHHHHHhhcc--CCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHH
Q 011320 217 ETAQFFKRDFEE--NGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (488)
Q Consensus 217 e~~~~~~~~l~~--~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (488)
+....+-+.++- +.++++ +.++ .... ...... .-..+.+.+. + ++-=|+|+||++-+.++
T Consensus 145 eRi~~~a~~~g~d~~~~l~~-i~~~-~~~~-~e~~~~---~l~~l~~~i~-~-~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 145 DRIRAIAERFGVDPDAVLDN-ILYA-RAYT-SEHQME---LLDYLAAKFS-E-EPFRLLIVDSIMALFRV 206 (313)
T ss_pred HHHHHHHHHcCCChHHhcCc-EEEe-cCCC-HHHHHH---HHHHHHHHhh-c-cCCCEEEEEcchHhhhh
Confidence 444333333321 223445 3332 2221 222211 1233455555 3 34447999999977554
No 88
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.37 E-value=0.017 Score=60.33 Aligned_cols=125 Identities=15% Similarity=0.176 Sum_probs=73.3
Q ss_pred cceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecC--chH
Q 011320 142 EMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV--NME 217 (488)
Q Consensus 142 ~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe--r~e 217 (488)
..+.||++.+|-++. +-+|.-+-|+|++|+|||+|+.+++.++... ..+.+....++|.-.-+ +.+
T Consensus 103 ~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~----------~~~gg~~g~vlyIdtE~~f~~e 172 (342)
T PLN03186 103 IQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLP----------LDQGGGEGKAMYIDTEGTFRPQ 172 (342)
T ss_pred ceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcc----------hhhCCCCceEEEEECCCCccHH
Confidence 458899999998765 6678889999999999999998888764310 01111122577777665 344
Q ss_pred HHHHHHHhhc--cCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHH
Q 011320 218 TAQFFKRDFE--ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (488)
Q Consensus 218 ~~~~~~~~l~--~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (488)
....+-+.+. ....+++-. ++...+ ........ ..+++.+. .++--|+|+||++-+.+.
T Consensus 173 Rl~qia~~~~~~~~~~l~~i~-~~~~~~--~e~~~~ll---~~~~~~~~--~~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 173 RLIQIAERFGLNGADVLENVA-YARAYN--TDHQSELL---LEAASMMA--ETRFALMIVDSATALYRT 233 (342)
T ss_pred HHHHHHHHcCCChhhhccceE-EEecCC--HHHHHHHH---HHHHHHhh--ccCCCEEEEeCcHHHHHH
Confidence 4444433332 222445533 333221 22222211 12334444 344558999999987654
No 89
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.35 E-value=0.045 Score=57.77 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=38.5
Q ss_pred ccceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 141 EEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 141 ~~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.+.|||.-+|-++. +.+|.-+.|.|++|+|||+|+.+++.+.
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3458899999998874 8899999999999999999999988764
No 90
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.29 E-value=0.042 Score=60.17 Aligned_cols=62 Identities=21% Similarity=0.201 Sum_probs=48.0
Q ss_pred cceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHH
Q 011320 142 EMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (488)
Q Consensus 142 ~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (488)
+.+.|||..+|-++ -+-+|+-+.|.|++|+|||+|+.+++.+... + + +..|+|+..-|..+.
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~------------~-~--ge~~lyis~ee~~~~ 74 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIK------------R-F--DEPGVFVTFEESPED 74 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------------h-c--CCCEEEEEccCCHHH
Confidence 35689999999886 4889999999999999999999888765421 0 0 126788888887543
No 91
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.28 E-value=0.036 Score=60.48 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=47.4
Q ss_pred ceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHH
Q 011320 143 MIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETA 219 (488)
Q Consensus 143 ~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~ 219 (488)
.+.|||.-+|-++. +-+|..++|.|++|+|||+|..+++.+... . .+..|+|+..-|+.+..
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~-------~--------~ge~~lyvs~eE~~~~l 65 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-------H--------FDEPGVFVTFEESPQDI 65 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-------h--------CCCCEEEEEEecCHHHH
Confidence 36899999999876 779999999999999999999887654311 0 01168888887775443
No 92
>PTZ00035 Rad51 protein; Provisional
Probab=96.20 E-value=0.016 Score=60.30 Aligned_cols=128 Identities=13% Similarity=0.165 Sum_probs=71.5
Q ss_pred Ccccceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecC--
Q 011320 139 YPEEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV-- 214 (488)
Q Consensus 139 ~~~~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe-- 214 (488)
.-...+.||++.+|-++- +-+|.-+.|+|++|+|||+|+.+++...... .++.+.+..++|.-.-+
T Consensus 95 ~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp----------~~~gg~~g~vvyIdtE~~f 164 (337)
T PTZ00035 95 KNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLP----------IEQGGGEGKVLYIDTEGTF 164 (337)
T ss_pred ccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccc----------cccCCCCceEEEEEccCCC
Confidence 335668899999999874 6689999999999999999998887654310 00111122455655432
Q ss_pred chHHHHHHHHhhc--cCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHH
Q 011320 215 NMETAQFFKRDFE--ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (488)
Q Consensus 215 r~e~~~~~~~~l~--~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (488)
+.+....+.+.+. ...++++- .+. ....+ ....... ..+.+.+. +++--|+|+||++-+.+.
T Consensus 165 ~~eri~~ia~~~g~~~~~~l~nI-~~~-~~~~~-e~~~~~l---~~~~~~l~--~~~~~lvVIDSital~r~ 228 (337)
T PTZ00035 165 RPERIVQIAERFGLDPEDVLDNI-AYA-RAYNH-EHQMQLL---SQAAAKMA--EERFALLIVDSATALFRV 228 (337)
T ss_pred CHHHHHHHHHHhCCChHhHhhce-EEE-ccCCH-HHHHHHH---HHHHHHhh--ccCccEEEEECcHHhhhh
Confidence 2343333333321 11234452 222 22221 1221111 12334444 355568999999987543
No 93
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.08 E-value=0.032 Score=57.32 Aligned_cols=126 Identities=14% Similarity=0.183 Sum_probs=72.3
Q ss_pred cceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc--hH
Q 011320 142 EMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--ME 217 (488)
Q Consensus 142 ~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~e 217 (488)
..+.||+..+|-++. +-+|.-+.|+|++|+|||+|+.+++-++.... +..+.+..+||+-.-+. .+
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~----------~~gg~~~~~~yi~te~~f~~~ 151 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPE----------EKGGLEGKAVYIDTEGTFRPE 151 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhcccc----------ccCCCCceEEEEeCCCCcCHH
Confidence 347899999998765 67899999999999999999999886642100 00011126788877663 33
Q ss_pred HHHHHHHhhc--cCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHH
Q 011320 218 TAQFFKRDFE--ENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (488)
Q Consensus 218 ~~~~~~~~l~--~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (488)
....+.+.+. .+..+++-.++ .. .. ...+.. ..-.+.+.+. +..+-=++|+||++-+-++
T Consensus 152 rl~~~~~~~g~~~~~~l~~i~~~-~~-~~-~~~~~~---~~~~l~~~i~-~~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 152 RIEQMAEALGLDPDEVLDNIHVA-RA-YN-SDHQML---LAEKAEELIK-EGENIKLVIVDSLTAHFRA 213 (317)
T ss_pred HHHHHHHHcCCChHhhhccEEEE-eC-CC-HHHHHH---HHHHHHHHHh-ccCceeEEEEECchHHhhh
Confidence 3333333322 12234553333 22 11 122221 1224444444 3233338999999987544
No 94
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.05 E-value=0.068 Score=51.00 Aligned_cols=103 Identities=13% Similarity=0.195 Sum_probs=56.4
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecC-chHHHHHHHHhhccCCCcceE
Q 011320 157 IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV-NMETAQFFKRDFEENGSMERV 235 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe-r~e~~~~~~~~l~~~~~~~~t 235 (488)
+-+|+-+.|.|++|+|||+++.+++.+... .+..++|.-.-+ ..+....+.....+ ..+++
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~----------------~g~~v~yi~~e~~~~~rl~~~~~~~~~-~~~~~- 70 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAAR----------------QGKKVVYIDTEGLSPERFKQIAEDRPE-RALSN- 70 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh----------------CCCeEEEEECCCCCHHHHHHHHHhChH-HHhcC-
Confidence 567899999999999999999888766421 012567777653 33322222221111 12344
Q ss_pred EEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHH
Q 011320 236 TLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADA 284 (488)
Q Consensus 236 vvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A 284 (488)
+++.... ++..... ....+.+.+. +.+. =++++||++.+..+
T Consensus 71 i~~~~~~--~~~~~~~---~~~~l~~~~~-~~~~-~lvVIDSis~l~~~ 112 (209)
T TIGR02237 71 FIVFEVF--DFDEQGV---AIQKTSKFID-RDSA-SLVVVDSFTALYRL 112 (209)
T ss_pred EEEEECC--CHHHHHH---HHHHHHHHHh-hcCc-cEEEEeCcHHHhHH
Confidence 3333332 2222211 1223445554 3333 37888999988654
No 95
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.01 E-value=0.014 Score=66.64 Aligned_cols=110 Identities=19% Similarity=0.328 Sum_probs=68.9
Q ss_pred cceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHH
Q 011320 142 EMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (488)
Q Consensus 142 ~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (488)
..+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.++.. .+..|+|.---+..+.
T Consensus 39 ~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~----------------~G~~v~yId~E~t~~~ 102 (790)
T PRK09519 39 SVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA----------------AGGVAAFIDAEHALDP 102 (790)
T ss_pred ceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH----------------cCCcEEEECCccchhH
Confidence 468899999999887 668999999999999999999886655421 0115566654443221
Q ss_pred HHHHHHhhccCCC-cceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHH
Q 011320 219 AQFFKRDFEENGS-MERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (488)
Q Consensus 219 ~~~~~~~l~~~~~-~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (488)
+ ..+.+ |+ +++. +++ ..+ +.++ ++.+++.+- .++.--|+|+||++-+..
T Consensus 103 -~-~A~~l---GvDl~~l-lv~-~~~--~~E~------~l~~i~~lv-~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 103 -D-YAKKL---GVDTDSL-LVS-QPD--TGEQ------ALEIADMLI-RSGALDIVVIDSVAALVP 152 (790)
T ss_pred -H-HHHHc---CCChhHe-EEe-cCC--CHHH------HHHHHHHHh-hcCCCeEEEEcchhhhcc
Confidence 1 12223 32 2332 333 322 1233 344455554 467778999999997774
No 96
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.97 E-value=0.11 Score=51.59 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=36.4
Q ss_pred cceecceeeeeeee-ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 142 EMIQTGISTIDVMN-SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~-pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+-+.||+..+|-++ -+.+|.-+.|.|++|+|||+++.+++.+.
T Consensus 11 ~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 11 EEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred cCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45679999999764 47789999999999999999998887664
No 97
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.90 E-value=0.28 Score=45.43 Aligned_cols=156 Identities=12% Similarity=0.061 Sum_probs=75.8
Q ss_pred EEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhh-------ccCCCcceE
Q 011320 163 IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDF-------EENGSMERV 235 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l-------~~~~~~~~t 235 (488)
+.|.|++|+|||+|+.+++.+..+ .+..++|...-|..+........+ ...+ +.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----------------~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g---~l 62 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----------------RGEPGLYVTLEESPEELIENAESLGWDLERLEDEG---LL 62 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----------------CCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcC---Ce
Confidence 578999999999999998776531 011466776666544332111222 1112 11
Q ss_pred EEE-EeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHH
Q 011320 236 TLF-LNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYE 314 (488)
Q Consensus 236 vvv-~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~E 314 (488)
.++ ..+...+.............+.+... +.+.-++++|+++.+... .+ ...-..+.+++.
T Consensus 63 ~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~--~~~~~~lviD~~~~~~~~--------~~--------~~~~~~i~~l~~ 124 (187)
T cd01124 63 AIVDADPDEIGPAESSLRLELIQRLKDAIE--EFKAKRVVIDSVSGLLLM--------EQ--------STARLEIRRLLF 124 (187)
T ss_pred EEEecCccccchhhhhhhHHHHHHHHHHHH--HhCCCEEEEeCcHHHhhc--------Ch--------HHHHHHHHHHHH
Confidence 111 11112223222110011112222222 233458999999988653 00 012234455555
Q ss_pred hhcccCCCCcceeEEeEEeecCCCCCCCcccccccccceEEEeecc
Q 011320 315 RAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQ 360 (488)
Q Consensus 315 Rag~~~~~~GSIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~ 360 (488)
...+ .| +|.+.+.......-+.........+.|+.|.|++.
T Consensus 125 ~l~~----~g-~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~~ 165 (187)
T cd01124 125 ALKR----FG-VTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLRLD 165 (187)
T ss_pred HHHH----CC-CEEEEEeccccCCCcccCcCceeEeeeEEEEEEEE
Confidence 5532 23 46655543332211112234467899999999877
No 98
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.81 E-value=0.021 Score=54.16 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=24.3
Q ss_pred EEEeccCCCCChhHHHHHHHHHhcccc
Q 011320 162 KIPLFSAAGLPHNEIAAQICRQAGLVK 188 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~~~~ 188 (488)
|+.|+|+||+||||+...|++..+..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~h 28 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPH 28 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 789999999999999999999877555
No 99
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.78 E-value=0.1 Score=56.42 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=37.6
Q ss_pred cceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 142 EMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.|||.-+|-++. +.+|+-+.|.|++|+|||+|+.+++.+.
T Consensus 60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~ 104 (446)
T PRK11823 60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARL 104 (446)
T ss_pred CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 348899999998874 7789999999999999999999987764
No 100
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.72 E-value=0.045 Score=56.51 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=36.9
Q ss_pred cceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 142 EMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+.||++.+|.++. +-+|.-+.|+|++|+|||+|+.+++.++
T Consensus 76 ~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~ 120 (316)
T TIGR02239 76 IQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTC 120 (316)
T ss_pred ceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHH
Confidence 458899999998765 5678889999999999999999988754
No 101
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.67 E-value=0.068 Score=53.48 Aligned_cols=128 Identities=14% Similarity=0.180 Sum_probs=74.7
Q ss_pred cccceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecC--c
Q 011320 140 PEEMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV--N 215 (488)
Q Consensus 140 ~~~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe--r 215 (488)
-...+.||++.+|.++ -+-.|.=.=|+|++|+|||.|+.+++-++.... +..+.+..+||.-.-- +
T Consensus 16 ~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~----------~~~g~~~~vvyidTe~~f~ 85 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPE----------EIGGLGGKVVYIDTEGTFS 85 (256)
T ss_dssp TS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGG----------CTTSSSSEEEEEESSSSS-
T ss_pred cCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhccc----------ccccCCCceEEEeCCCCCC
Confidence 3456889999999887 366788899999999999999999887754211 1112233677776543 2
Q ss_pred hHHHHHHHHhh--ccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHH
Q 011320 216 METAQFFKRDF--EENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADAL 285 (488)
Q Consensus 216 ~e~~~~~~~~l--~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~ 285 (488)
.+....+.+.+ ..+.+++|..++-.. + ..+...... .+...+. + .+-=|||+||++.+-+..
T Consensus 86 ~~Rl~~i~~~~~~~~~~~l~~I~v~~~~-~--~~~l~~~L~---~l~~~l~-~-~~ikLIVIDSIaalfr~e 149 (256)
T PF08423_consen 86 PERLQQIAERFGLDPEEILDNIFVIRVF-D--LEELLELLE---QLPKLLS-E-SKIKLIVIDSIAALFRSE 149 (256)
T ss_dssp HHHHHHHHHHTTS-HHHHHHTEEEEE-S-S--HHHHHHHHH---HHHHHHH-H-SCEEEEEEETSSHHHHHH
T ss_pred HHHHHHHhhccccccchhhhceeeeecC-C--HHHHHHHHH---HHHhhcc-c-cceEEEEecchHHHHHHH
Confidence 33333333322 223356665544332 2 222222221 2344555 3 456699999999987754
No 102
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=95.64 E-value=0.024 Score=61.34 Aligned_cols=138 Identities=8% Similarity=-0.152 Sum_probs=122.2
Q ss_pred CCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhcccC
Q 011320 241 LANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAGRIE 320 (488)
Q Consensus 241 t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag~~~ 320 (488)
....+..++++|-++.+.++++++ |.++|+-+.++.+.+|+..++|...-+...+..-.|+...-+-|++.+++...
T Consensus 290 liaNTSnMPVAAREasIYtGiTia-EY~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYE-- 366 (588)
T COG1155 290 LIANTSNMPVAAREASIYTGITIA-EYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYE-- 366 (588)
T ss_pred EeecCccchHHHhhhhhhhhhhHH-HHHHhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHH--
Confidence 355677889999999999999999 99999999999999999999999999988899999999988999999998874
Q ss_pred CCCc--------ceeEEeEEeecCCCCCCCcccccccccceEEEeeccccccCCCCCCcCCCCccccccc
Q 011320 321 GRKG--------SITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLQNRQIYPPINVLPSLSRLMKS 382 (488)
Q Consensus 321 ~~~G--------SIT~i~~v~~~~dD~~dpi~d~~~~i~Dg~ivLsr~La~~g~yPAID~l~S~SR~~~~ 382 (488)
+.| ++|...||..+.++...++.+.+-+.|=..|-+.-.|..+.++|-..|..+.+-.-+.
T Consensus 367 -RaG~v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~ 435 (588)
T COG1155 367 -RAGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSL 435 (588)
T ss_pred -hcCeeeecCCCcceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHH
Confidence 455 4567777888889999999999999999999999999999999999998887765554
No 103
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.51 E-value=0.34 Score=46.88 Aligned_cols=172 Identities=15% Similarity=0.193 Sum_probs=86.1
Q ss_pred ceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHH
Q 011320 147 GISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKR 224 (488)
Q Consensus 147 GI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~ 224 (488)
||+.+|-++ -+-+|.-+.|.|++|+|||+++.+++.+.-. .+..++|.-.-++.+....-..
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~----------------~g~~~~y~s~e~~~~~l~~~~~ 64 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLK----------------NGEKAMYISLEEREERILGYAK 64 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----------------CCCeEEEEECCCCHHHHHHHHH
Confidence 567777765 3558999999999999999998888765421 1126777777666433211111
Q ss_pred hhcc--CCCcceEEEEEeCCCCCHHHHHhHH-HHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCC
Q 011320 225 DFEE--NGSMERVTLFLNLANDPTIERIITP-RIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGY 301 (488)
Q Consensus 225 ~l~~--~~~~~~tvvv~~t~~~~~~~r~~a~-~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gy 301 (488)
.+.- .+..++...+... ++..-.... ...-.+....+ ..+.+ ++++||++-+- . ..+.
T Consensus 65 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~~~i~-~~~~~-~vVIDsls~l~-----~--~~~~------- 125 (224)
T TIGR03880 65 SKGWDLEDYIDKSLYIVRL---DPSDFKTSLNRIKNELPILIK-ELGAS-RVVIDPISLLE-----T--LFDD------- 125 (224)
T ss_pred HcCCChHHHHhCCeEEEec---CHHHHHhhHHHHHHHHHHHHH-HhCCC-EEEEcChHHHh-----h--hcCC-------
Confidence 1111 0112222334332 121111101 11112222233 44555 56799999761 1 1111
Q ss_pred CCchhhhHHHHHHhhcccCCCCcceeEEeEEeecCCCC-CCCcccccccccceEEEeec
Q 011320 302 PGYMYTDLAQIYERAGRIEGRKGSITQIPILTMPNDDI-THPTPDLTGYITEGQIYIDR 359 (488)
Q Consensus 302 p~~lfs~l~~l~ERag~~~~~~GSIT~i~~v~~~~dD~-~dpi~d~~~~i~Dg~ivLsr 359 (488)
+...-..+.+|+....+ . -+|.+.+......+. ... ......+.|+-|+|+.
T Consensus 126 ~~~~r~~l~~l~~~lk~----~-~~tvll~s~~~~~~~~~~~-~~~~~~l~D~vI~L~~ 178 (224)
T TIGR03880 126 DAERRTELFRFYSSLRE----T-GVTTILTSEADKTNVFASK-YGLIEYLADGVIILKY 178 (224)
T ss_pred HHHHHHHHHHHHHHHHh----C-CCEEEEEEcccCCCCCccC-CCceEEEEeEEEEEee
Confidence 11122345566666532 2 336666654432111 001 1335778899999963
No 104
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.39 E-value=0.018 Score=50.23 Aligned_cols=34 Identities=12% Similarity=0.281 Sum_probs=27.9
Q ss_pred eeee-eeeeecccCcEEEeccCCCCChhHHHHHHH
Q 011320 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 148 I~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
..++ |.-+.+..|+.++|.|++|+|||||+.++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3445 344678899999999999999999999876
No 105
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.29 E-value=0.014 Score=57.78 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=29.1
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++++ .=+.|.+|.+.||+|.||+|||||+..|+-.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 4553 3378999999999999999999999888653
No 106
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.26 E-value=0.015 Score=57.70 Aligned_cols=36 Identities=11% Similarity=0.334 Sum_probs=30.8
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.++++ .=+.+.+|+.+.|.|+||||||||+..||--
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 66674 4479999999999999999999999998643
No 107
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.25 E-value=0.03 Score=52.61 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=52.2
Q ss_pred EEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc--hHHHHHHHHhhccCCCcceEEEEE
Q 011320 162 KIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--METAQFFKRDFEENGSMERVTLFL 239 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~e~~~~~~~~l~~~~~~~~tvvv~ 239 (488)
++.|.|++|+|||++...++...+. -++|...+.. .|..+.+.+...+.+ ..-.++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-------------------~~~~iat~~~~~~e~~~ri~~h~~~R~-~~w~t~-- 60 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-------------------QVLYIATAQPFDDEMAARIAHHRQRRP-AHWQTV-- 60 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-------------------CcEeCcCCCCChHHHHHHHHHHHhcCC-CCCeEe--
Confidence 6899999999999999998776431 2567777764 344455544444443 112121
Q ss_pred eCCCCCHHHHHhHHHHHHHHHHHhhH--hcCCeEEEEEcchhhHHHHH
Q 011320 240 NLANDPTIERIITPRIALTTAEYLAY--ECGKHVLVILTDMSSYADAL 285 (488)
Q Consensus 240 ~t~~~~~~~r~~a~~~a~tiAEyfr~--d~G~~Vlli~Dsltr~a~A~ 285 (488)
..|. .+++.+.. +++. ++++|++|-|....
T Consensus 61 ---E~~~-----------~l~~~i~~~~~~~~--~VlID~Lt~~~~n~ 92 (170)
T PRK05800 61 ---EEPL-----------DLAELLRADAAPGR--CVLVDCLTTWVTNL 92 (170)
T ss_pred ---cccc-----------cHHHHHHhhcCCCC--EEEehhHHHHHHHH
Confidence 1211 13343431 2333 79999999998765
No 108
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.13 E-value=0.054 Score=53.36 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.6
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011320 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
-+.++||+|+|||||+.-||+..+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred eEEEECCCccchhHHHHHHHhccC
Confidence 378999999999999999999875
No 109
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.05 E-value=0.02 Score=54.11 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=29.4
Q ss_pred eeeeeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++-.+.+.+|.+++|.|++|+|||||+.+|+..
T Consensus 14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEccCcEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34444568999999999999999999999998654
No 110
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.03 E-value=0.14 Score=43.99 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=23.0
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+.-+.|.|++|+|||+|+..++++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 36679999999999999999998875
No 111
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.99 E-value=0.097 Score=45.26 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEeccCCCCChhHHHHHHHHHhc
Q 011320 163 IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.|.|++|+|||+++..+++..+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57899999999999999999875
No 112
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.96 E-value=0.022 Score=55.16 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=27.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 22 isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3378999999999999999999999999654
No 113
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.91 E-value=0.024 Score=53.44 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=26.1
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.+.+|+.++|.|++|+|||||+.+|+.
T Consensus 13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 13 FAAERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999999999864
No 114
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.87 E-value=0.023 Score=53.76 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=30.4
Q ss_pred cceeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 146 TGISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 146 TGI~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++-+.+| .-+.+-+|.++.|.||+|+|||||+.++|.-
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc
Confidence 3444444 3367889999999999999999999999764
No 115
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.81 E-value=0.025 Score=52.97 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 78899999999999999999999998643
No 116
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.80 E-value=0.027 Score=54.50 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=28.0
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33689999999999999999999999997653
No 117
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.79 E-value=0.028 Score=53.75 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468899999999999999999999999753
No 118
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.75 E-value=0.025 Score=55.34 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 23 LNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 68899999999999999999999998643
No 119
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.73 E-value=0.029 Score=53.65 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=27.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3378899999999999999999999999654
No 120
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.71 E-value=0.029 Score=53.68 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=27.2
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3368899999999999999999999998653
No 121
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.70 E-value=0.029 Score=53.99 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3378899999999999999999999999654
No 122
>PF05729 NACHT: NACHT domain
Probab=94.68 E-value=0.12 Score=46.33 Aligned_cols=24 Identities=8% Similarity=0.147 Sum_probs=20.5
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011320 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+.|.|++|+|||+++..++.+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 367899999999999999887654
No 123
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.67 E-value=0.029 Score=53.99 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=26.4
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 36889999999999999999999999864
No 124
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.66 E-value=0.031 Score=53.76 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=28.5
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 443 3368899999999999999999999998653
No 125
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.03 Score=54.05 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|+|++|+|||||+.+|+..
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999999653
No 126
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.65 E-value=0.03 Score=53.25 Aligned_cols=31 Identities=13% Similarity=0.199 Sum_probs=27.1
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 17 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 17 LNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3367889999999999999999999998643
No 127
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.65 E-value=0.028 Score=53.79 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=26.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999999999643
No 128
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.59 E-value=0.092 Score=49.33 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=51.1
Q ss_pred EEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc--hHHHHHHHHhhccCCCcceEEEEEe
Q 011320 163 IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN--METAQFFKRDFEENGSMERVTLFLN 240 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer--~e~~~~~~~~l~~~~~~~~tvvv~~ 240 (488)
+.|.|++|+|||++..+++...+. .++|....+. .|..+.+.+.....+ ..-+++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~-------------------~~~y~at~~~~d~em~~rI~~H~~~R~-~~w~t~--- 58 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGG-------------------PVTYIATAEAFDDEMAERIARHRKRRP-AHWRTI--- 58 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCC-------------------CeEEEEccCcCCHHHHHHHHHHHHhCC-CCceEe---
Confidence 578999999999999888765321 4677777765 233344333222222 111221
Q ss_pred CCCCCHHHHHhHHHHHHHHHHHhhHhc-CCeEEEEEcchhhHHHHHH
Q 011320 241 LANDPTIERIITPRIALTTAEYLAYEC-GKHVLVILTDMSSYADALR 286 (488)
Q Consensus 241 t~~~~~~~r~~a~~~a~tiAEyfr~d~-G~~Vlli~Dsltr~a~A~r 286 (488)
.. ..-+++.+. +. +.+ .+++|++|-|.....
T Consensus 59 --E~-----------~~~l~~~l~-~~~~~~-~VLIDclt~~~~n~l 90 (169)
T cd00544 59 --ET-----------PRDLVSALK-ELDPGD-VVLIDCLTLWVTNLL 90 (169)
T ss_pred --ec-----------HHHHHHHHH-hcCCCC-EEEEEcHhHHHHHhC
Confidence 11 223455454 33 444 699999999998874
No 129
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.58 E-value=0.032 Score=53.59 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=27.0
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 378899999999999999999999998653
No 130
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.55 E-value=0.03 Score=54.48 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=26.9
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 78899999999999999999999999754
No 131
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.55 E-value=0.034 Score=52.91 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 20 ~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 20 ISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478899999999999999999999998653
No 132
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.54 E-value=0.029 Score=54.41 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 78899999999999999999999999643
No 133
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.53 E-value=0.031 Score=54.19 Aligned_cols=32 Identities=9% Similarity=0.209 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999998653
No 134
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.52 E-value=0.035 Score=58.10 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=32.2
Q ss_pred ceeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 147 GISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 147 GI~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+..++| .=+.+-+|.-+-+.||||||||||+.+||--
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 577775 5589999999999999999999999999653
No 135
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.51 E-value=0.034 Score=54.47 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=27.0
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 378899999999999999999999998643
No 136
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.033 Score=54.31 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 22 LSINPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999999999643
No 137
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.47 E-value=0.033 Score=49.18 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccc
Confidence 578899999999999999999999986543
No 138
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.039 Score=52.82 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=28.9
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|++++|.|++|+|||||+.+|+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 66688999999999999999999999999653
No 139
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=94.46 E-value=0.04 Score=57.01 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=30.9
Q ss_pred eeeeeee-eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.++++.+ +.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 4567544 79999999999999999999999998654
No 140
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.46 E-value=0.039 Score=51.04 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=26.7
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 78899999999999999999999999654
No 141
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.45 E-value=0.036 Score=52.85 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=26.4
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 67889999999999999999999998653
No 142
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.44 E-value=0.037 Score=53.97 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=28.8
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++ |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44 33478999999999999999999999999643
No 143
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.43 E-value=0.036 Score=54.22 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=27.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3378999999999999999999999998654
No 144
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.43 E-value=0.03 Score=53.69 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=26.4
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 67899999999999999999999998653
No 145
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.43 E-value=0.03 Score=54.50 Aligned_cols=28 Identities=18% Similarity=0.181 Sum_probs=26.1
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 21 FSVRPGEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHcC
Confidence 6889999999999999999999999864
No 146
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.41 E-value=0.037 Score=52.34 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=29.2
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.+++ .=+++.+|.+++|.|++|+|||||+..+..
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 44554 337899999999999999999999998854
No 147
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.41 E-value=0.034 Score=47.99 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=22.0
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011320 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+++|.|++|+||||++.++++..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 589999999999999999999865
No 148
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.40 E-value=0.1 Score=45.47 Aligned_cols=93 Identities=9% Similarity=0.103 Sum_probs=49.6
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCch---HHHHHHHHhhccCCCcceEEE
Q 011320 161 QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM---ETAQFFKRDFEENGSMERVTL 237 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~---e~~~~~~~~l~~~~~~~~tvv 237 (488)
+-+.|.|++|+|||+++..++++...-. ... ...-++++-+.... .....+.+.+..... .
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~--- 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEA--------EIK---NHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--S--- 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHH--------HHC---CCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--S---
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhh--------hcc---CCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--c---
Confidence 4478899999999999999988753100 000 01245566666543 444444555544321 1
Q ss_pred EEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHH
Q 011320 238 FLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYA 282 (488)
Q Consensus 238 v~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a 282 (488)
..+. ....-.+.++++ . .+.+++++|+.-.+.
T Consensus 69 -----~~~~------~~l~~~~~~~l~-~-~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 69 -----RQTS------DELRSLLIDALD-R-RRVVLLVIDEADHLF 100 (131)
T ss_dssp -----TS-H------HHHHHHHHHHHH-H-CTEEEEEEETTHHHH
T ss_pred -----cCCH------HHHHHHHHHHHH-h-cCCeEEEEeChHhcC
Confidence 1111 111134455555 3 344899999987764
No 149
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.39 E-value=0.039 Score=54.75 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 31 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 31 INLSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3377899999999999999999999999753
No 150
>PF13173 AAA_14: AAA domain
Probab=94.38 E-value=0.17 Score=44.73 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.5
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011320 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++-+.|.|+.|+|||||+.++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~ 25 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKD 25 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 455789999999999999998765
No 151
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.039 Score=53.61 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=27.3
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3467899999999999999999999998654
No 152
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.35 E-value=0.038 Score=52.97 Aligned_cols=30 Identities=13% Similarity=0.235 Sum_probs=26.9
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 368899999999999999999999998653
No 153
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.33 E-value=0.092 Score=54.39 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=68.7
Q ss_pred cceecceeeeeeeee---cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHH
Q 011320 142 EMIQTGISTIDVMNS---IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMET 218 (488)
Q Consensus 142 ~~l~TGI~aID~l~p---ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~ 218 (488)
+.+.||+..+|..++ +.+|.-+=|+|++++|||+|+-....+... . +..|+|+-+ |..=.
T Consensus 32 ~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~------~----------g~~~a~ID~-e~~ld 94 (322)
T PF00154_consen 32 EVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK------Q----------GGICAFIDA-EHALD 94 (322)
T ss_dssp -EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH------T----------T-EEEEEES-SS---
T ss_pred ceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhc------c----------cceeEEecC-cccch
Confidence 568999999999887 457888899999999999997665554421 1 126666655 32211
Q ss_pred HHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHHhcCC
Q 011320 219 AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREE 294 (488)
Q Consensus 219 ~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl~~ge 294 (488)
.+ +...++- . ++|- +|+-+ + + .+ -++.++|.+. ..|.-.++++||+...+- ..|+-..+++
T Consensus 95 ~~-~a~~lGv-d-l~rl-lv~~P-~-~-~E------~al~~~e~li-rsg~~~lVVvDSv~al~p-~~E~e~~~~~ 155 (322)
T PF00154_consen 95 PE-YAESLGV-D-LDRL-LVVQP-D-T-GE------QALWIAEQLI-RSGAVDLVVVDSVAALVP-KAELEGEIGD 155 (322)
T ss_dssp HH-HHHHTT----GGGE-EEEE--S-S-HH------HHHHHHHHHH-HTTSESEEEEE-CTT-B--HHHHTTSTSS
T ss_pred hh-HHHhcCc-c-ccce-EEecC-C-c-HH------HHHHHHHHHh-hcccccEEEEecCcccCC-HHHHhhcccc
Confidence 12 2233422 1 5564 33333 2 1 22 3567888887 678877899999876542 2355544444
No 154
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.035 Score=53.52 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=28.6
Q ss_pred eeee-eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TIDV-MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID~-l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++- =+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4433 368899999999999999999999998654
No 155
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.33 E-value=0.037 Score=54.46 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=27.9
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|.=+.+-+|+.++|.|++|+|||||+.+|+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4457889999999999999999999999975
No 156
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.33 E-value=0.04 Score=52.97 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=26.9
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 367889999999999999999999999653
No 157
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.31 E-value=0.041 Score=53.75 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=26.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999999998643
No 158
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.31 E-value=0.044 Score=51.18 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+-+|+.++|.|++|+|||||+.+|+..
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34477889999999999999999999999764
No 159
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.30 E-value=0.037 Score=54.49 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=27.1
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 23 NLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 367889999999999999999999999754
No 160
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.30 E-value=0.041 Score=52.77 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=28.9
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 17 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 443 3368999999999999999999999998664
No 161
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.29 E-value=0.037 Score=53.46 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=26.8
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 367889999999999999999999999653
No 162
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.29 E-value=0.13 Score=54.53 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=26.9
Q ss_pred HHHHHhhHhcCCeEEEEEcchhhHHHHHHHHHH
Q 011320 258 TTAEYLAYECGKHVLVILTDMSSYADALREVSA 290 (488)
Q Consensus 258 tiAEyfr~d~G~~Vlli~Dsltr~a~A~rEisl 290 (488)
.-|+-++ ..|+.++|++|-+-||-.++.+.-|
T Consensus 94 e~a~~~~-~~gr~tiLflDEIHRfnK~QQD~lL 125 (436)
T COG2256 94 EEARKNR-LLGRRTILFLDEIHRFNKAQQDALL 125 (436)
T ss_pred HHHHHHH-hcCCceEEEEehhhhcChhhhhhhh
Confidence 3466777 6799999999999999999998743
No 163
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.27 E-value=0.037 Score=53.33 Aligned_cols=31 Identities=6% Similarity=0.111 Sum_probs=27.3
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred ceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3367899999999999999999999999653
No 164
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.25 E-value=0.044 Score=50.98 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 21 LTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999999998654
No 165
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.25 E-value=0.037 Score=54.54 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=26.2
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 6789999999999999999999999965
No 166
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.043 Score=53.77 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=27.0
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 378899999999999999999999998643
No 167
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.23 E-value=0.039 Score=54.38 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3378999999999999999999999998654
No 168
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.23 E-value=0.043 Score=52.82 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=27.3
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3367899999999999999999999998653
No 169
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.23 E-value=0.043 Score=52.53 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3367899999999999999999999998754
No 170
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.21 E-value=0.042 Score=53.57 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=27.8
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33468899999999999999999999999754
No 171
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.19 E-value=0.044 Score=54.35 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999998654
No 172
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.18 E-value=0.044 Score=51.44 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=27.1
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 377899999999999999999999999654
No 173
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.18 E-value=0.044 Score=54.47 Aligned_cols=31 Identities=10% Similarity=0.216 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3368999999999999999999999999754
No 174
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.17 E-value=0.041 Score=52.15 Aligned_cols=33 Identities=12% Similarity=0.072 Sum_probs=28.2
Q ss_pred eeeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 151 IDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 151 ID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.|.=+.+-+|++++|.|++|+|||||+.+|+..
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 17 FDLSITFLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 343367889999999999999999999999664
No 175
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.15 E-value=0.042 Score=52.40 Aligned_cols=30 Identities=7% Similarity=0.263 Sum_probs=27.3
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 378999999999999999999999998664
No 176
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.15 E-value=0.04 Score=53.82 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=27.3
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 19 VNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3367899999999999999999999998653
No 177
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.037 Score=55.19 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|++++|.|++|+|||||+.+|+..
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 78899999999999999999999998653
No 178
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.14 E-value=0.044 Score=53.08 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3377899999999999999999999999654
No 179
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.14 E-value=0.043 Score=53.42 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=26.9
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+.+|+..
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 367889999999999999999999999754
No 180
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.13 E-value=0.047 Score=52.11 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=27.3
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3368899999999999999999999999653
No 181
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.12 E-value=0.044 Score=52.27 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=27.8
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+-+|++++|+|++|+|||||+..|+..
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33467889999999999999999999998654
No 182
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.12 E-value=0.048 Score=53.16 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=28.6
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 443 3368999999999999999999999999653
No 183
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.12 E-value=0.046 Score=53.46 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=28.7
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++ |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44 33478899999999999999999999998653
No 184
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.12 E-value=0.044 Score=53.43 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=29.0
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 443 3468899999999999999999999999754
No 185
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.11 E-value=0.041 Score=54.83 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=28.7
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 443 3478899999999999999999999998653
No 186
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.11 E-value=0.046 Score=54.19 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=27.1
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 377899999999999999999999999754
No 187
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.09 E-value=0.047 Score=53.62 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=27.9
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999998653
No 188
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.09 E-value=0.047 Score=52.78 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3378999999999999999999999998754
No 189
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=94.08 E-value=0.054 Score=56.21 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.7
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++++ .=+.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL 70 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45664 4588999999999999999999999998653
No 190
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.07 E-value=0.047 Score=52.30 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=26.7
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 368899999999999999999999998643
No 191
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.06 E-value=0.054 Score=50.42 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=26.8
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 67889999999999999999999999764
No 192
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.05 E-value=0.049 Score=52.41 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3478899999999999999999999999654
No 193
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.05 E-value=0.048 Score=53.35 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=27.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3378899999999999999999999999754
No 194
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.04 E-value=0.049 Score=53.30 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=27.0
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 22 SLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999999998653
No 195
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.04 E-value=0.046 Score=53.74 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=27.2
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3377899999999999999999999998643
No 196
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.03 E-value=0.049 Score=50.54 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 20 i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 20 LSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3377899999999999999999999998654
No 197
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=94.03 E-value=0.052 Score=56.28 Aligned_cols=36 Identities=11% Similarity=0.278 Sum_probs=30.7
Q ss_pred eeeeeee-eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++++|.+ +.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl 65 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL 65 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 4566544 78999999999999999999999998654
No 198
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.00 E-value=0.05 Score=53.66 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3378999999999999999999999998653
No 199
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.99 E-value=0.05 Score=52.96 Aligned_cols=32 Identities=13% Similarity=0.313 Sum_probs=28.5
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55678999999999999999999999998654
No 200
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.057 Score=55.88 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=30.8
Q ss_pred eeeeeee-eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++++|.+ +.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 4567544 89999999999999999999999998653
No 201
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.97 E-value=0.053 Score=52.23 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 67889999999999999999999998653
No 202
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.97 E-value=0.048 Score=53.83 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=26.7
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 28 IKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 68899999999999999999999999754
No 203
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=93.97 E-value=0.05 Score=55.47 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=28.8
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 453 3368999999999999999999999999653
No 204
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.95 E-value=0.046 Score=52.18 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=27.0
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999999998654
No 205
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=93.95 E-value=0.051 Score=54.43 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999998654
No 206
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.94 E-value=0.052 Score=54.16 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=27.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 31 isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 31 LDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468899999999999999999999998654
No 207
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.92 E-value=0.053 Score=53.37 Aligned_cols=29 Identities=17% Similarity=0.239 Sum_probs=26.6
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 23 ~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 23 TMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred eEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 37788999999999999999999999974
No 208
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.91 E-value=0.054 Score=54.49 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=32.7
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++++| .=+.+.+|..+||.|.||+|||||..+|.+-.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~ 63 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc
Confidence 68886 45899999999999999999999999987754
No 209
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=93.91 E-value=0.061 Score=56.23 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=29.7
Q ss_pred eeeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 151 IDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 151 ID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+|.=+.+-+|+.++|+|++|+|||||+.+|+..
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl 47 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGL 47 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 477788999999999999999999999999754
No 210
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.90 E-value=0.052 Score=52.70 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 26 ISFSLRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3478899999999999999999999998653
No 211
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.90 E-value=0.055 Score=54.04 Aligned_cols=31 Identities=10% Similarity=0.161 Sum_probs=27.7
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 39 vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 39 IDMQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3378899999999999999999999999764
No 212
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.90 E-value=0.056 Score=53.71 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=27.1
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+.+|+..
T Consensus 24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 377899999999999999999999999754
No 213
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=93.88 E-value=0.053 Score=56.77 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=29.8
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+.+|+.++|+|++|+|||||+.+|+..
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3553 4478999999999999999999999999764
No 214
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.88 E-value=0.054 Score=52.86 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=26.3
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 6 LTIQQGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999998654
No 215
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.88 E-value=0.054 Score=54.15 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=28.2
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999998654
No 216
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.86 E-value=0.053 Score=54.09 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=26.3
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 6788999999999999999999999976
No 217
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.86 E-value=0.055 Score=53.37 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=26.8
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 68899999999999999999999999753
No 218
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.86 E-value=0.055 Score=53.27 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=26.9
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 25 SLDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 377899999999999999999999999653
No 219
>PRK10908 cell division protein FtsE; Provisional
Probab=93.86 E-value=0.056 Score=52.20 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=26.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999999999643
No 220
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.85 E-value=0.051 Score=53.23 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 67999999999999999999999998753
No 221
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.82 E-value=0.064 Score=55.14 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=32.7
Q ss_pred eeeeeee-eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 148 ISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 148 I~aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+++||.. +.+.+|+.+||.|.||+|||++...|.+-.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~ll 55 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLL 55 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhcc
Confidence 7899765 899999999999999999999998886643
No 222
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.81 E-value=0.058 Score=53.91 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=28.1
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+-+|+.++|.|++|+|||||+.+|+..
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999999654
No 223
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.80 E-value=0.061 Score=50.38 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=26.7
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 367889999999999999999999998653
No 224
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.80 E-value=0.054 Score=51.85 Aligned_cols=30 Identities=7% Similarity=0.223 Sum_probs=26.8
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+.+|+..
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHhccc
Confidence 367889999999999999999999998653
No 225
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.79 E-value=0.053 Score=53.44 Aligned_cols=30 Identities=7% Similarity=0.177 Sum_probs=26.9
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 23 SFDLYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 377889999999999999999999998654
No 226
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.79 E-value=0.06 Score=52.97 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34478899999999999999999999999753
No 227
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.78 E-value=0.059 Score=53.11 Aligned_cols=30 Identities=10% Similarity=0.181 Sum_probs=27.1
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.=+.+.+|+.++|.|++|+|||||+.+|+.
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 22 ISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 346789999999999999999999999975
No 228
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=93.77 E-value=0.056 Score=52.21 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=27.3
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 27 VSLTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3378899999999999999999999998653
No 229
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.77 E-value=0.057 Score=53.08 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3477899999999999999999999998653
No 230
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=93.77 E-value=0.057 Score=52.87 Aligned_cols=31 Identities=10% Similarity=0.205 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|+|++|+|||||+.+|+..
T Consensus 40 vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3368899999999999999999999999654
No 231
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.76 E-value=0.045 Score=54.62 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=27.3
Q ss_pred eeeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 151 IDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 151 ID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++.+..+.+|++++|.|++|+|||||+..|+..
T Consensus 17 l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 17 LHRLPVPREGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred hhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 333334889999999999999999999998654
No 232
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.76 E-value=0.058 Score=54.55 Aligned_cols=30 Identities=3% Similarity=0.008 Sum_probs=27.1
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 31 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 378899999999999999999999999654
No 233
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.76 E-value=0.059 Score=53.96 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=26.7
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 68899999999999999999999998654
No 234
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.75 E-value=0.053 Score=53.34 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=26.7
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 25 LDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 67899999999999999999999999764
No 235
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.74 E-value=0.061 Score=53.03 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=27.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 24 INLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3368999999999999999999999998754
No 236
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.73 E-value=0.059 Score=54.12 Aligned_cols=30 Identities=13% Similarity=0.133 Sum_probs=27.0
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 368899999999999999999999999654
No 237
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=93.72 E-value=0.059 Score=56.42 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=28.1
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+..|+.++|+|++|+|||||+.+|+..
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34478889999999999999999999999754
No 238
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.72 E-value=0.059 Score=53.59 Aligned_cols=29 Identities=7% Similarity=0.284 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 67889999999999999999999998654
No 239
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.71 E-value=0.058 Score=53.16 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred eeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3368899999999999999999999998654
No 240
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.71 E-value=0.058 Score=51.29 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3377899999999999999999999999653
No 241
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.71 E-value=0.063 Score=52.83 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+..|+.++|.|++|+|||||+..|+..
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 33478889999999999999999999999753
No 242
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.70 E-value=0.059 Score=53.06 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=28.9
Q ss_pred eeee-eeeeecccCcEEEeccCCCCChhHHHHHHH
Q 011320 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 148 I~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
+.++ |.=+.+-+|.-+.|.|+||+||||||+.|.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4555 344789999999999999999999999973
No 243
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.69 E-value=0.062 Score=54.39 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+++.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl 56 (287)
T PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNAL 56 (287)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478999999999999999999999999654
No 244
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.69 E-value=0.058 Score=54.98 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=28.7
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|++++|.|++|+|||||+.+|+..
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 443 3378999999999999999999999999643
No 245
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.69 E-value=0.062 Score=51.98 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=26.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 67899999999999999999999998654
No 246
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.69 E-value=0.06 Score=53.29 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3378999999999999999999999998654
No 247
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.67 E-value=0.062 Score=53.01 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=26.7
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 26 TISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 37889999999999999999999999974
No 248
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.67 E-value=0.064 Score=52.20 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.7
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 33467889999999999999999999999654
No 249
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.66 E-value=0.058 Score=53.99 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=27.2
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3478899999999999999999999998643
No 250
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=93.65 E-value=0.066 Score=51.75 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=26.3
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 67889999999999999999999998653
No 251
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.64 E-value=0.062 Score=51.32 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=26.9
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 28 SFKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 367889999999999999999999999654
No 252
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=93.64 E-value=0.06 Score=53.45 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=29.3
Q ss_pred eee-eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
-++ |.=+.+-+|.++||+|..|+|||||+..|+.
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 344 4558999999999999999999999999854
No 253
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.062 Score=49.91 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=26.7
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 67889999999999999999999999654
No 254
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.63 E-value=0.062 Score=53.39 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=27.0
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 33 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 33 NLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 377899999999999999999999998653
No 255
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.63 E-value=0.062 Score=51.34 Aligned_cols=32 Identities=6% Similarity=0.149 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44478899999999999999999999998654
No 256
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.62 E-value=0.065 Score=53.14 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=27.4
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 30 NVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3347889999999999999999999999964
No 257
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.061 Score=56.42 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=29.1
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++ |.=+.+.+|+.++|+|++|+|||||+.+|+..
T Consensus 19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 44 34478999999999999999999999999654
No 258
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.60 E-value=0.062 Score=53.00 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+.-
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 67899999999999999999999999754
No 259
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.59 E-value=0.067 Score=53.62 Aligned_cols=31 Identities=10% Similarity=0.168 Sum_probs=27.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 43 vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 43 INLDIHENEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3368899999999999999999999999764
No 260
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.59 E-value=0.062 Score=53.62 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 29 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 29 VWLDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3377899999999999999999999999753
No 261
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.57 E-value=0.062 Score=53.75 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=27.4
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 60 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLVG 60 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3347899999999999999999999999864
No 262
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.57 E-value=0.066 Score=53.89 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=28.3
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 44578999999999999999999999999653
No 263
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.55 E-value=0.071 Score=50.62 Aligned_cols=34 Identities=6% Similarity=0.220 Sum_probs=28.6
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 443 3467899999999999999999999998653
No 264
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.54 E-value=0.071 Score=51.22 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=28.5
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 55578999999999999999999999998654
No 265
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.54 E-value=0.063 Score=52.06 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.-+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred ceEEEcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 3468899999999999999999999998654
No 266
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=93.54 E-value=0.065 Score=56.09 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=29.3
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+-+|+.++|+|++|+|||||+.+|+.-
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 55 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL 55 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 3454 4478899999999999999999999999653
No 267
>PRK08118 topology modulation protein; Reviewed
Probab=93.54 E-value=0.062 Score=50.13 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=23.2
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011320 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|+.|+|++|+|||||+..|++..+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998876
No 268
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.061 Score=51.44 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.=+.+-+| +++|.|++|+|||||+.+|+.
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHHHHHhC
Confidence 34678889 999999999999999999964
No 269
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.53 E-value=0.061 Score=53.62 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=28.9
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++ |.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44 34478999999999999999999999998654
No 270
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.53 E-value=0.83 Score=40.30 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.0
Q ss_pred EEeccCCCCChhHHHHHHHHHhc
Q 011320 163 IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.+.|++|+||||++.++++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 56889999999999999987754
No 271
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.53 E-value=0.065 Score=52.70 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=26.9
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 24 LPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999999999754
No 272
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.52 E-value=0.067 Score=52.71 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 25 LPIYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 67889999999999999999999999753
No 273
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.50 E-value=0.069 Score=54.04 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=28.6
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
++ |.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 54 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 44 3447899999999999999999999999975
No 274
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.50 E-value=0.07 Score=53.43 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=27.9
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478899999999999999999999998653
No 275
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.49 E-value=0.072 Score=51.82 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=28.8
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++ |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44 33478999999999999999999999998653
No 276
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.48 E-value=0.07 Score=53.96 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=27.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3378899999999999999999999999754
No 277
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.47 E-value=0.062 Score=53.40 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=26.8
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 367889999999999999999999999654
No 278
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=93.45 E-value=0.066 Score=56.79 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=32.4
Q ss_pred eeeeeee-eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 148 ISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 148 I~aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++++|.+ +++-+||.+||.|.+|+|||||-.++.+-.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~ 337 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI 337 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc
Confidence 6788766 799999999999999999999988887643
No 279
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.42 E-value=0.18 Score=50.14 Aligned_cols=94 Identities=16% Similarity=0.240 Sum_probs=54.3
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc---hHHHHHHHHhhccCCCcceE
Q 011320 159 RGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN---METAQFFKRDFEENGSMERV 235 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer---~e~~~~~~~~l~~~~~~~~t 235 (488)
..+.++|.|.+|+|||+|+.++++.... .+.- ..++++-.+.. .+..+.+.+.+..... ..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~------------~~~f--~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~ 81 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRI------------KNRF--DGVIWVSLSKNPSLEQLLEQILRQLGEPDS--SI 81 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHH------------CCCC--TEEEEEEEES-SCCHHHHHHHHHHHTCC-S--TS
T ss_pred CeEEEEEEcCCcCCcceeeeeccccccc------------cccc--cccccccccccccccccccccccccccccc--cc
Confidence 4556899999999999999998766220 0111 15677777654 3444555566654320 00
Q ss_pred EEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHH
Q 011320 236 TLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYA 282 (488)
Q Consensus 236 vvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a 282 (488)
........ ..-.+.++++ +++.|+|+||+....
T Consensus 82 -----~~~~~~~~------~~~~l~~~L~---~~~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 82 -----SDPKDIEE------LQDQLRELLK---DKRCLLVLDDVWDEE 114 (287)
T ss_dssp -----SCCSSHHH------HHHHHHHHHC---CTSEEEEEEEE-SHH
T ss_pred -----cccccccc------ccccchhhhc---cccceeeeeeecccc
Confidence 11122222 2234567776 449999999986554
No 280
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.42 E-value=0.059 Score=52.32 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=25.3
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+-+|+.++|.|++|+|||||+..|+..
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999999764
No 281
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.40 E-value=0.068 Score=53.83 Aligned_cols=31 Identities=13% Similarity=0.231 Sum_probs=27.3
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 20 LSLRIEPGRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3368999999999999999999999998653
No 282
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.38 E-value=0.07 Score=52.07 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=26.1
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 7889999999999999999999999864
No 283
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.37 E-value=0.061 Score=52.94 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=26.1
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 6789999999999999999999999865
No 284
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.36 E-value=0.067 Score=51.30 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=26.1
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++-+||.++|+|..|+|||||..||+-
T Consensus 34 FtL~~~QTlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 34 FTLREGQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred EEecCCcEEEEEccCCCcHhHHHHHHhc
Confidence 7899999999999999999999999854
No 285
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.35 E-value=0.073 Score=51.89 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=27.2
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 377899999999999999999999999765
No 286
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.34 E-value=0.074 Score=55.07 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=30.3
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++++| .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 45664 4478999999999999999999999998653
No 287
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.32 E-value=0.081 Score=52.87 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=27.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 38 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 38 VDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3377899999999999999999999999764
No 288
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.32 E-value=0.074 Score=53.88 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=27.7
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~G 54 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNG 54 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhc
Confidence 4457899999999999999999999999864
No 289
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.28 E-value=0.077 Score=53.21 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=28.1
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44478999999999999999999999998653
No 290
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=93.27 E-value=0.075 Score=56.15 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=29.1
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|+|++|+|||||+.+|+..
T Consensus 29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl 63 (375)
T PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63 (375)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 453 4478999999999999999999999999753
No 291
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.27 E-value=0.081 Score=52.09 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=27.1
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 24 SLDFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 377899999999999999999999999754
No 292
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.26 E-value=0.079 Score=52.22 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=26.9
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 24 NMDFPERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 367899999999999999999999998654
No 293
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.26 E-value=0.073 Score=48.27 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=26.3
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 57889999999999999999999998654
No 294
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.24 E-value=0.074 Score=55.39 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=28.5
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++ .=+.+-.|.-+-+.||+||||||||.+||-
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 553 347899999999999999999999999964
No 295
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.23 E-value=0.074 Score=50.96 Aligned_cols=29 Identities=10% Similarity=0.269 Sum_probs=26.1
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++-.|+++.|.|++|.|||||++-||-.
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhc
Confidence 56789999999999999999999998654
No 296
>PRK07261 topology modulation protein; Provisional
Probab=93.22 E-value=0.073 Score=49.77 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=22.6
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011320 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|+.|+|.+|+|||||+.++++..+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987754
No 297
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.22 E-value=0.079 Score=52.94 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 62 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGM 62 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34478899999999999999999999998654
No 298
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.21 E-value=0.084 Score=52.28 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3377899999999999999999999998654
No 299
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.20 E-value=0.082 Score=53.13 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=27.0
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 39 vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 337889999999999999999999999974
No 300
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.19 E-value=0.081 Score=52.31 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=26.4
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 67899999999999999999999998653
No 301
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.17 E-value=0.085 Score=52.53 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=27.5
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|.=+.+-+|++++|+|++|+|||||+..|+.
T Consensus 34 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 34 NINMMVHEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4447789999999999999999999999964
No 302
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.17 E-value=0.08 Score=55.28 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=30.0
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
..+++ .=+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34564 4478999999999999999999999998653
No 303
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.15 E-value=0.081 Score=52.96 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 32 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 32 VFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3378999999999999999999999999653
No 304
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=93.15 E-value=0.089 Score=50.80 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=26.9
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 24 vs~~i~~G~~~~I~G~nGsGKStLl~~l~G 53 (220)
T TIGR02982 24 INLEINPGEIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 347788999999999999999999999964
No 305
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.15 E-value=0.085 Score=53.39 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.6
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|++++|+|++|+|||||+..|+..
T Consensus 54 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 443 3368899999999999999999999999754
No 306
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.13 E-value=0.084 Score=50.02 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=25.9
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5788999999999999999999999864
No 307
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.13 E-value=0.096 Score=47.76 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=27.7
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.-+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34477899999999999999999999998653
No 308
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.13 E-value=0.085 Score=53.41 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=28.8
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl 56 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL 56 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 453 3378999999999999999999999999643
No 309
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.13 E-value=0.085 Score=52.98 Aligned_cols=32 Identities=9% Similarity=0.196 Sum_probs=27.9
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 51 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNGI 51 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33478999999999999999999999998653
No 310
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.11 E-value=0.098 Score=51.85 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=33.4
Q ss_pred eecceeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 144 IQTGISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 144 l~TGI~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++-|.++++ .-+.|-+|+.+.|+|++|+|||||+.+|....
T Consensus 13 yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 13 YPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred cCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc
Confidence 335666664 44789999999999999999999999997644
No 311
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.11 E-value=0.088 Score=50.65 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=27.1
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 24 SFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 378899999999999999999999998754
No 312
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.11 E-value=0.087 Score=53.72 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=28.3
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
++ |.=+.+.+|+.++|.|+.|+|||||+.+|+.
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhC
Confidence 44 3347899999999999999999999999864
No 313
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.10 E-value=0.085 Score=54.06 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=28.8
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++ .=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3453 447899999999999999999999999864
No 314
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.07 E-value=0.088 Score=52.26 Aligned_cols=31 Identities=13% Similarity=0.222 Sum_probs=27.7
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3378899999999999999999999999764
No 315
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.06 E-value=0.084 Score=55.58 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=28.8
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl 52 (369)
T PRK11000 18 ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52 (369)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 443 3378899999999999999999999999754
No 316
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.06 E-value=0.073 Score=52.78 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=24.8
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999998654
No 317
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.06 E-value=0.091 Score=52.62 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=27.9
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 43 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 43 DISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 33377889999999999999999999999754
No 318
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.05 E-value=0.09 Score=52.83 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=26.8
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 78899999999999999999999999654
No 319
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.04 E-value=0.081 Score=50.26 Aligned_cols=27 Identities=15% Similarity=0.372 Sum_probs=24.3
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
+.+-+|++++|.|++|+|||||++-+|
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlA 57 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLA 57 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHh
Confidence 457899999999999999999998874
No 320
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.04 E-value=0.088 Score=53.39 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|++++|+|++|+|||||+..|+..
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44478899999999999999999999998654
No 321
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.01 E-value=0.35 Score=51.60 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=22.4
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011320 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
...+.+.|++|+|||+|+..|++..+
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999988764
No 322
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.97 E-value=0.096 Score=52.26 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=27.3
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 27 SHVPIRKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 3478999999999999999999999998643
No 323
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.96 E-value=0.094 Score=53.61 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=29.2
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 59 ~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl 94 (305)
T PRK14264 59 HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM 94 (305)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3453 3478999999999999999999999999643
No 324
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.94 E-value=0.091 Score=52.30 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 29 vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 29 ITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3377899999999999999999999999754
No 325
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=92.92 E-value=0.082 Score=51.84 Aligned_cols=29 Identities=10% Similarity=0.263 Sum_probs=26.4
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|++++|.|++|+|||||+..|+..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 67889999999999999999999998654
No 326
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.89 E-value=0.098 Score=52.70 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=28.2
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44478999999999999999999999998654
No 327
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.89 E-value=0.098 Score=52.79 Aligned_cols=30 Identities=27% Similarity=0.235 Sum_probs=27.1
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence 367889999999999999999999999764
No 328
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=92.85 E-value=0.11 Score=54.19 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=28.8
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl 46 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL 46 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 66688999999999999999999999998654
No 329
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=92.83 E-value=0.097 Score=54.55 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=30.1
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
..++| .=+.+.+|+.++|.|+.|+|||||+.+|+..
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 34664 3478999999999999999999999999653
No 330
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.82 E-value=0.1 Score=52.44 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=28.1
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+++-+|+.++|.|++|+|||||+..|+..
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34478999999999999999999999999654
No 331
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=92.82 E-value=0.11 Score=55.44 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=29.4
Q ss_pred eeeee-eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STIDV-MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID~-l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++. =+.+.+|+.++|+|++|+|||||+.+|+..
T Consensus 17 ~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl 52 (402)
T PRK09536 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT 52 (402)
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 44533 378899999999999999999999999764
No 332
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.80 E-value=0.1 Score=51.96 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 26 is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (261)
T PRK14258 26 VSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM 56 (261)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3377899999999999999999999999754
No 333
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.79 E-value=0.11 Score=51.61 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 67889999999999999999999998654
No 334
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.78 E-value=0.1 Score=52.79 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=27.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+-+|++++|+|++|+|||||+.+|++..
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 789999999999999999999999997653
No 335
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=92.73 E-value=0.086 Score=52.08 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=26.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.=+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~G 44 (248)
T PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAG 44 (248)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 336789999999999999999999999854
No 336
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.72 E-value=0.094 Score=51.39 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=28.0
Q ss_pred eeeeeee-eecccCcEEEeccCCCCChhHHHHHHH
Q 011320 148 ISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 148 I~aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
..+++.. +.+-+|+.+.|+||||+|||||+..|.
T Consensus 15 ~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3444333 689999999999999999999998873
No 337
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.71 E-value=0.095 Score=52.64 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=29.8
Q ss_pred eeee-eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 148 I~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
-.++ |.=+++-+|.-++|.|+.|+|||||+..|++
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3445 3447899999999999999999999999877
No 338
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.69 E-value=0.11 Score=50.73 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=26.6
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+.+|++++|.|++|+|||||+..|+..
T Consensus 20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 20 LEVERGDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 78889999999999999999999998654
No 339
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.68 E-value=0.11 Score=52.42 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=26.8
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 78899999999999999999999999754
No 340
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=92.68 E-value=0.2 Score=50.91 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=69.3
Q ss_pred ccceecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecC-chH
Q 011320 141 EEMIQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV-NME 217 (488)
Q Consensus 141 ~~~l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe-r~e 217 (488)
-+.+.||.+.+|-++. +-+|.-+=|||++|+|||+|..+++-++.+ ..+.++.+=..|- +.+
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~---------------~g~~a~fIDtE~~l~p~ 103 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK---------------PGGKAAFIDTEHALDPE 103 (279)
T ss_pred cccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhc---------------CCCeEEEEeCCCCCCHH
Confidence 5678899999998876 336777899999999999999998777642 1111322223342 344
Q ss_pred HHHHHHHhhccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCC--eEEEEEcchhhHHHHH
Q 011320 218 TAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGK--HVLVILTDMSSYADAL 285 (488)
Q Consensus 218 ~~~~~~~~l~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~--~Vlli~Dsltr~a~A~ 285 (488)
....+-... ..-++++..+..--.. -+++++. ..+. ==|+++||++-+-++.
T Consensus 104 r~~~l~~~~-------~d~l~v~~~~~~e~q~--------~i~~~~~-~~~~~~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 104 RAKQLGVDL-------LDNLLVSQPDTGEQQL--------EIAEKLA-RSGAEKIDLLVVDSVAALVRAE 157 (279)
T ss_pred HHHHHHHhh-------hcceeEecCCCHHHHH--------HHHHHHH-HhccCCCCEEEEecCcccchhh
Confidence 443333321 1124445554443333 3344444 3333 5589999998877765
No 341
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.68 E-value=0.91 Score=44.74 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=20.8
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011320 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+-+.|.|++|+|||||+..+.+..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc
Confidence 368899999999999999987764
No 342
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.65 E-value=0.11 Score=52.71 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=26.8
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGL 56 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 78999999999999999999999999654
No 343
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.65 E-value=0.11 Score=54.20 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=29.3
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 19 HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4553 3378999999999999999999999998653
No 344
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.65 E-value=0.46 Score=47.29 Aligned_cols=23 Identities=4% Similarity=0.156 Sum_probs=19.9
Q ss_pred EEEeccCCCCChhHHHHHHHHHh
Q 011320 162 KIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|+.|.|++|+|||+|+..|....
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 78999999999999988876543
No 345
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=92.65 E-value=0.11 Score=55.04 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|+.++|+|++|+|||||+.+|+..
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 68 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGF 68 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4478899999999999999999999999743
No 346
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=92.64 E-value=0.11 Score=54.76 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=28.4
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++ .=+.+..|+.++|+|++|+|||||+.+|+-
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 443 347889999999999999999999999964
No 347
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=92.64 E-value=0.074 Score=51.93 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=25.3
Q ss_pred eeeeee-eeecccCcEEEeccCCCCChhHHH
Q 011320 148 ISTIDV-MNSIARGQKIPLFSAAGLPHNEIA 177 (488)
Q Consensus 148 I~aID~-l~pig~Gqr~gIfg~~G~GKt~Ll 177 (488)
+++++. =+.+.+|+.++|.|++|+|||||+
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 455543 378999999999999999999996
No 348
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.62 E-value=0.11 Score=53.61 Aligned_cols=35 Identities=3% Similarity=0.141 Sum_probs=29.6
Q ss_pred eeeeee-eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++.+ +.+.+|+.++|.|++|+|||||+..|+..
T Consensus 40 ~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 355443 78999999999999999999999998653
No 349
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=92.61 E-value=0.11 Score=51.54 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=26.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 67889999999999999999999998654
No 350
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.58 E-value=0.12 Score=52.07 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=29.0
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 443 3378999999999999999999999999754
No 351
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.48 E-value=0.12 Score=52.00 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=28.8
Q ss_pred eeeee-eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++.+ +.+-+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 56 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL 56 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 45433 68899999999999999999999998654
No 352
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.48 E-value=0.12 Score=49.57 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=28.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+ +.++|.|++|+|||||+..|+..
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 77789999 99999999999999999998643
No 353
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=0.12 Score=56.63 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.1
Q ss_pred eeeee-eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 150 TIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 150 aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++++. ++|.+|.|++|.|++|+||||++.++-+-.
T Consensus 367 iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057|consen 367 VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred eecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45444 789999999999999999999999987754
No 354
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.44 E-value=0.71 Score=43.08 Aligned_cols=41 Identities=20% Similarity=0.361 Sum_probs=26.6
Q ss_pred eecceeeeeeeee--cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 144 IQTGISTIDVMNS--IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 144 l~TGI~aID~l~p--ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.++++..|-++. +.+|+-..|.|++|+|||+++.+++...
T Consensus 14 ~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 14 LDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp HHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred ccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3455555554442 4589999999999999999988876654
No 355
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=92.43 E-value=0.1 Score=54.90 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=29.8
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++ |.=+.+.+|+.++|.|++|+|||||+.+|+...
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 44 344789999999999999999999999997653
No 356
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=92.42 E-value=0.11 Score=53.12 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=29.3
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.++| .=+.+-+|+.++|.|+.|+|||||+.+|+..
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4553 3378899999999999999999999999653
No 357
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.40 E-value=0.45 Score=49.86 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=55.9
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCch---HHHHHHHHhhccCCCcce
Q 011320 158 ARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNM---ETAQFFKRDFEENGSMER 234 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~---e~~~~~~~~l~~~~~~~~ 234 (488)
+++..+.|.|++|+|||+++..+.++... . .+...++|+-|-+.. .....+.+.+.....-
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~-------~-------~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~-- 116 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEE-------I-------AVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPP-- 116 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH-------h-------cCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCC--
Confidence 34567999999999999999998876531 0 012367777666533 3333344444331100
Q ss_pred EEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHH
Q 011320 235 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYA 282 (488)
Q Consensus 235 tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a 282 (488)
....+. .. .--.+.+++. ..++.++|++|++-...
T Consensus 117 ------~~~~~~-~~-----~~~~~~~~l~-~~~~~~viviDE~d~l~ 151 (394)
T PRK00411 117 ------SSGLSF-DE-----LFDKIAEYLD-ERDRVLIVALDDINYLF 151 (394)
T ss_pred ------CCCCCH-HH-----HHHHHHHHHH-hcCCEEEEEECCHhHhh
Confidence 001111 11 1112345666 67889999999987665
No 358
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=92.32 E-value=0.12 Score=51.92 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=28.7
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 443 3378899999999999999999999999654
No 359
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=92.30 E-value=0.1 Score=58.78 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=28.2
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|++++|+|++|+|||||+.+|+..
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~ 50 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNE 50 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44478999999999999999999999999654
No 360
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.23 E-value=0.13 Score=51.66 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=31.9
Q ss_pred ceeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 147 GISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 147 GI~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+-+++| .-+++-.|.-.-+.|+||+||||+|.||.|-
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL 50 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL 50 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc
Confidence 556775 4479999999999999999999999999664
No 361
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.22 E-value=0.11 Score=57.01 Aligned_cols=33 Identities=9% Similarity=0.253 Sum_probs=28.6
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|.=+.+-+|++++|.|++|+|||||++.|.+..
T Consensus 353 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 353 GVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344789999999999999999999999987643
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=92.20 E-value=0.1 Score=59.71 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=28.9
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
++ |.=+.+..|.|+||.|++|+|||||+.+|+.
T Consensus 192 ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 192 LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 44 4558899999999999999999999999964
No 363
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.19 E-value=0.13 Score=53.41 Aligned_cols=32 Identities=9% Similarity=0.163 Sum_probs=28.0
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.=+.+-+|++++|.|++|+|||+|+..|++..
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 33789999999999999999999999997643
No 364
>PRK05973 replicative DNA helicase; Provisional
Probab=92.12 E-value=1 Score=44.81 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=25.5
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 157 IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+-+|.-+.|.|.+|+|||+++.+++.++
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999988765
No 365
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.03 E-value=0.15 Score=50.63 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=30.7
Q ss_pred ceeee-eee-eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 147 GISTI-DVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 147 GI~aI-D~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|=+.| |.+ +.+-||.-.+|.||||+|||||+..|.-..
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 44444 444 789999999999999999999999886543
No 366
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=91.99 E-value=0.12 Score=58.34 Aligned_cols=32 Identities=9% Similarity=0.168 Sum_probs=28.1
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|++++|+|++|+|||||+.+|+..
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~ 52 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKILNGE 52 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 34478899999999999999999999998654
No 367
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=91.99 E-value=0.13 Score=56.26 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=29.4
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|++++|.|++|+|||||+..|+..
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 443 4478999999999999999999999999775
No 368
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=91.90 E-value=0.15 Score=55.99 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=31.7
Q ss_pred eeeeeee-eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++++|.. +.+-+|..+||.|.||+|||||+..|+.-
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL 340 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6888644 89999999999999999999999998653
No 369
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.89 E-value=0.13 Score=44.33 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.9
Q ss_pred EEeccCCCCChhHHHHHHHHHh
Q 011320 163 IPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|+|.|.+|+|||||+..+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998874
No 370
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=91.85 E-value=0.1 Score=56.67 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=28.4
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
++=+++.+|.|.|+.|..|+||||||.+|++
T Consensus 98 ~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 98 KANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred CCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 4447899999999999999999999999988
No 371
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.80 E-value=0.16 Score=51.27 Aligned_cols=34 Identities=9% Similarity=0.245 Sum_probs=29.0
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++ |.=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl 55 (283)
T PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI 55 (283)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44 33478899999999999999999999999654
No 372
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=91.79 E-value=0.14 Score=55.87 Aligned_cols=35 Identities=9% Similarity=0.185 Sum_probs=29.4
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+.+|+.++|+|++|+|||||+.+|+..
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3453 4478999999999999999999999998654
No 373
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.72 E-value=0.39 Score=54.31 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=50.0
Q ss_pred CcE-EEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc-hHH-HHHHHHhhccCCCc----
Q 011320 160 GQK-IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN-MET-AQFFKRDFEENGSM---- 232 (488)
Q Consensus 160 Gqr-~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer-~e~-~~~~~~~l~~~~~~---- 232 (488)
-|| +++.|++|.|||||++-||+|+|- . ++=+=+-.+| .++ .+.++...+.+.++
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGY-------s-----------VvEINASDeRt~~~v~~kI~~avq~~s~l~ads 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGY-------S-----------VVEINASDERTAPMVKEKIENAVQNHSVLDADS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCc-------e-----------EEEecccccccHHHHHHHHHHHHhhccccccCC
Confidence 345 467899999999999999999982 1 2223334556 233 34445545444433
Q ss_pred ceEEEEEeCCCCCH---HHHHhHHHHHHHHHHHhh
Q 011320 233 ERVTLFLNLANDPT---IERIITPRIALTTAEYLA 264 (488)
Q Consensus 233 ~~tvvv~~t~~~~~---~~r~~a~~~a~tiAEyfr 264 (488)
+=+++|+.--|-.| ..-.++..-+.-.+++..
T Consensus 387 rP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gk 421 (877)
T KOG1969|consen 387 RPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGK 421 (877)
T ss_pred CcceEEEecccCCcHHHHHHHHHHHHhhcchhhcC
Confidence 23556776666666 222333333444455554
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=91.64 E-value=1.4 Score=45.99 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=23.4
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+++..+++.|++|+||||++..++.+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456789999999999999998888764
No 375
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.61 E-value=0.12 Score=56.93 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=28.8
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.-+.+-.|.|+|++|..|+||||||..|+..
T Consensus 21 ~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~ 52 (530)
T COG0488 21 NVSLTLNPGERIGLVGRNGAGKSTLLKILAGE 52 (530)
T ss_pred CCcceeCCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 56688999999999999999999999998654
No 376
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=91.55 E-value=0.15 Score=56.05 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=29.0
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl 50 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD 50 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 454 3478999999999999999999999999753
No 377
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=91.54 E-value=0.15 Score=56.48 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=29.7
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+..|++++|.|++|+|||||+..|+..
T Consensus 21 ~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~ 56 (556)
T PRK11819 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 56 (556)
T ss_pred eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4553 4478999999999999999999999999754
No 378
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=91.50 E-value=0.93 Score=45.25 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=20.8
Q ss_pred CcEEEeccCCCCChhHHHHHHHHH
Q 011320 160 GQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.-++.++|.+|+|||+|++.|...
T Consensus 31 ~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 31 SLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999998654
No 379
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.40 E-value=0.18 Score=49.96 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=28.1
Q ss_pred eee-eeeeecccCcEEEeccCCCCChhHHHHHH
Q 011320 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQI 180 (488)
Q Consensus 149 ~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i 180 (488)
.++ |.-+.+.+|++++|.|++|+|||||+.++
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l 50 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLL 50 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 344 56678999999999999999999999887
No 380
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=91.38 E-value=0.16 Score=55.21 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=29.4
Q ss_pred eeeee-eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STIDV-MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID~-l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++++- =+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35543 378999999999999999999999998654
No 381
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=91.37 E-value=0.2 Score=56.33 Aligned_cols=36 Identities=11% Similarity=0.279 Sum_probs=30.5
Q ss_pred eeeeeee-eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++|.+ +.+.+|+.++|.|++|+|||||+..|+..
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl 373 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL 373 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4566544 68999999999999999999999998653
No 382
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=91.34 E-value=0.16 Score=56.17 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=27.9
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.=+.+-+||+++|.|++|+|||||+..|+...
T Consensus 362 i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 362 INFKIPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred ceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 33678899999999999999999999997754
No 383
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=0.15 Score=55.70 Aligned_cols=36 Identities=11% Similarity=0.296 Sum_probs=31.0
Q ss_pred eeeeee-eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 149 STIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 149 ~aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++++.+ +++-+|+|+.|.|.+|+|||||++-+++..
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence 466544 789999999999999999999999998754
No 384
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.30 E-value=0.16 Score=47.90 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=23.0
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+|+.+.|.|++|+|||||+.+|+...
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 47889999999999999999997654
No 385
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=91.30 E-value=0.17 Score=55.12 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=29.2
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 15 ~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~ 50 (500)
T TIGR02633 15 KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV 50 (500)
T ss_pred EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3453 3478999999999999999999999998653
No 386
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.29 E-value=0.17 Score=48.55 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.0
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 159 RGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+|..++|.|++|+|||||+..|+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999987653
No 387
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.20 E-value=0.16 Score=51.42 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=29.9
Q ss_pred eeeeeeeecccCcEEEeccCCCCChhHHHHHHH
Q 011320 149 STIDVMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 149 ~aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
.+-|.-+.|.+|+++|+.|+.|.||||+++|+.
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLT 71 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT 71 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHh
Confidence 344888999999999999999999999999983
No 388
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.19 E-value=0.18 Score=48.95 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.0
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|.-+.|..|+-+-+.|+||||||||++-+|-
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHHHHHHhc
Confidence 4446799999999999999999999988754
No 389
>PRK12377 putative replication protein; Provisional
Probab=91.18 E-value=0.45 Score=47.55 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.1
Q ss_pred cEEEeccCCCCChhHHHHHHHHHh
Q 011320 161 QKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+-+.+.|++|+|||.|+..|++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999998765
No 390
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=91.18 E-value=0.17 Score=55.21 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=29.4
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+..|+.++|.|++|+|||||+.+|+..
T Consensus 19 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (506)
T PRK13549 19 KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV 54 (506)
T ss_pred EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3553 3478899999999999999999999998754
No 391
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.16 E-value=0.16 Score=58.02 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=26.7
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-.|++++|+|.+|+|||||++.+.+-
T Consensus 493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 367899999999999999999999998653
No 392
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.16 E-value=0.16 Score=43.57 Aligned_cols=21 Identities=0% Similarity=0.237 Sum_probs=19.7
Q ss_pred EEEeccCCCCChhHHHHHHHH
Q 011320 162 KIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~ 182 (488)
|++|+|.+|+|||||+..+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999999985
No 393
>PRK14530 adenylate kinase; Provisional
Probab=91.09 E-value=0.2 Score=48.31 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=24.2
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011320 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|-++.|+|++|+||||+...|++..+
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999999988765
No 394
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=91.08 E-value=0.19 Score=53.64 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=27.6
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 47 isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl 77 (400)
T PRK10070 47 ASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred EEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 3368899999999999999999999999764
No 395
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=91.05 E-value=0.19 Score=55.26 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=29.5
Q ss_pred eee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.++ |.=+.+..|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~ 58 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRL 58 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 455 34478899999999999999999999998654
No 396
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.05 E-value=0.19 Score=47.67 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=24.3
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-+|+-+.|.|++|+|||||+..+++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 378999999999999999999998764
No 397
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=91.04 E-value=0.17 Score=57.01 Aligned_cols=34 Identities=15% Similarity=0.345 Sum_probs=28.7
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|++++|.|+.|+|||||+..|+..
T Consensus 327 il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~ 361 (638)
T PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE 361 (638)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 443 3468899999999999999999999999753
No 398
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.03 E-value=0.14 Score=47.02 Aligned_cols=22 Identities=5% Similarity=0.172 Sum_probs=18.1
Q ss_pred EEEeccCCCCChhHHHHHHHHH
Q 011320 162 KIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
||.|.|++|+|||||+..+++.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7899999999999999999887
No 399
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=90.98 E-value=0.18 Score=54.97 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=29.1
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
++++ .=+.+.+|+.++|+|++|+|||||+.+|+.
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G 308 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG 308 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhC
Confidence 4554 346899999999999999999999999964
No 400
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=90.97 E-value=0.19 Score=54.98 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=28.8
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 312 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV 312 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 443 3478899999999999999999999999653
No 401
>PRK13949 shikimate kinase; Provisional
Probab=90.97 E-value=0.37 Score=45.00 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.1
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhcc
Q 011320 161 QKIPLFSAAGLPHNEIAAQICRQAGL 186 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~~ 186 (488)
.++.|+|++|+||||+..++++..+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 47999999999999999999988763
No 402
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=90.96 E-value=0.19 Score=56.47 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=31.0
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
..+++ .=+.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl 65 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL 65 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 45664 4578999999999999999999999999765
No 403
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=90.93 E-value=0.18 Score=56.12 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=28.7
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|.=+++-+||+++|.|++|+|||||+..|++..
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344789999999999999999999999987654
No 404
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=90.93 E-value=0.2 Score=48.78 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=31.2
Q ss_pred eeee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 148 ISTI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 148 I~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++++ |.-+..-+|+-.||+|+.|.||||++.||+.-
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl 51 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL 51 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh
Confidence 4455 67788999999999999999999999999764
No 405
>PRK08181 transposase; Validated
Probab=90.91 E-value=0.29 Score=49.43 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=24.0
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
-+++.+.+.|++|+|||.|+..|++..
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHH
Confidence 478889999999999999999988765
No 406
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=90.89 E-value=0.17 Score=46.84 Aligned_cols=25 Identities=12% Similarity=0.275 Sum_probs=22.4
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHh
Q 011320 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|+.+.|.|++|+|||||+..|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6789999999999999999998753
No 407
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=90.88 E-value=0.1 Score=48.79 Aligned_cols=34 Identities=12% Similarity=0.352 Sum_probs=28.5
Q ss_pred eeeeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+|.|...-+++...++|.+|||||+|++.+...
T Consensus 25 g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 25 GIEELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp THHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4556667788999999999999999999998554
No 408
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=90.88 E-value=0.21 Score=52.93 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=28.5
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 42 ~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl 73 (382)
T TIGR03415 42 NASLDIEEGEICVLMGLSGSGKSSLLRAVNGL 73 (382)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 55588999999999999999999999999654
No 409
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=90.87 E-value=0.19 Score=55.23 Aligned_cols=31 Identities=6% Similarity=0.292 Sum_probs=27.5
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.-+.+-+|++++|.|++|+|||||+..|+..
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~ 368 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLLRTLVGE 368 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4478899999999999999999999998643
No 410
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=90.87 E-value=0.21 Score=46.41 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.1
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHh
Q 011320 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|+.+.|.|++|+|||||+..|+...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5678999999999999999987764
No 411
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=90.85 E-value=0.092 Score=52.12 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=32.6
Q ss_pred cceeeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 146 TGISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 146 TGI~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
-|++++| .=+.+-+|...+++||.|.||||+.+.|+-
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG 52 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG 52 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecc
Confidence 5899996 448999999999999999999999988743
No 412
>PRK08233 hypothetical protein; Provisional
Probab=90.82 E-value=0.21 Score=46.08 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=21.9
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHh
Q 011320 160 GQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.-++|.|++|+|||||...++..-
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4668999999999999999998764
No 413
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=90.77 E-value=0.2 Score=55.47 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=28.1
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.=+.+.+|++++|.|++|+|||||+..|+..
T Consensus 23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~ 54 (552)
T TIGR03719 23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV 54 (552)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34478999999999999999999999999753
No 414
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=90.75 E-value=0.22 Score=42.53 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEeccCCCCChhHHHHHHHHHh
Q 011320 162 KIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|+.|+|++|+|||+|+..+....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 78999999999999999987654
No 415
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=90.75 E-value=0.2 Score=54.45 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=28.6
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 47 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI 47 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 443 3478899999999999999999999998653
No 416
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=90.73 E-value=0.19 Score=57.13 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=28.1
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.=+.+-+|++++|.|++|+|||||+..|++..
T Consensus 493 isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~ 524 (708)
T TIGR01193 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524 (708)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33789999999999999999999999987643
No 417
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=90.71 E-value=0.23 Score=50.71 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=31.7
Q ss_pred ceeeee-eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 147 GISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 147 GI~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+..++| .=+.+.+|+-.|+.|+.|+|||||+.+|+...
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 356775 44789999999999999999999999986543
No 418
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=90.71 E-value=0.21 Score=55.22 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=28.8
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
|.=+.+-+|+|++|.|+.|+|||||+..|+...+
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~ 373 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG 373 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc
Confidence 3446788999999999999999999999966543
No 419
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=90.67 E-value=0.2 Score=56.51 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=27.1
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
=+.+-+|++++|.|+.|+|||||+.+|+..
T Consensus 339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~ 368 (635)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQ 368 (635)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 368899999999999999999999999754
No 420
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=90.66 E-value=0.21 Score=54.64 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=28.9
Q ss_pred ee-eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++ |.=+.+-.|+.++|.|++|+|||||+..|+..
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 54 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI 54 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 44 44478899999999999999999999998653
No 421
>PRK06217 hypothetical protein; Validated
Probab=90.63 E-value=0.22 Score=46.80 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=23.3
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhcc
Q 011320 161 QKIPLFSAAGLPHNEIAAQICRQAGL 186 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~~ 186 (488)
.||.|.|.+|+|||||..+|++..+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 57999999999999999999988763
No 422
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.59 E-value=0.2 Score=55.54 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=28.9
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|++++|.|++|+|||||++.|.+.
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~ 399 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF 399 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 443 3378999999999999999999999998764
No 423
>PRK05480 uridine/cytidine kinase; Provisional
Probab=90.56 E-value=0.23 Score=47.50 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=23.7
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.++..++|.|++|+|||||+..|++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998764
No 424
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=90.56 E-value=0.2 Score=54.82 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=28.0
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.=+.+.+|++++|.|++|+|||||+..|++..
T Consensus 341 i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33688999999999999999999999997643
No 425
>PRK14531 adenylate kinase; Provisional
Probab=90.55 E-value=0.23 Score=46.66 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=23.2
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011320 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+|+.++|++|+||||+...|++..+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999988876
No 426
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=90.53 E-value=0.24 Score=54.28 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=28.7
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 26 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 443 4478899999999999999999999998653
No 427
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=90.40 E-value=0.21 Score=56.86 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=28.0
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.=+.+-+|++++|.|++|+|||||+..|+...
T Consensus 498 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 498 FSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33678999999999999999999999987653
No 428
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=90.36 E-value=0.22 Score=56.51 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=28.0
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.=+.+-+|++++|.|++|+|||||++.|++..
T Consensus 472 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 503 (686)
T TIGR03797 472 VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE 503 (686)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34789999999999999999999999986643
No 429
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=90.35 E-value=0.25 Score=54.12 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=29.5
Q ss_pred eeee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 149 STID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 149 ~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+++ .=+.+-+|+.++|+|++|+|||||+..|+..
T Consensus 298 ~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl 333 (520)
T TIGR03269 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV 333 (520)
T ss_pred eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3564 4478999999999999999999999998643
No 430
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=90.35 E-value=0.21 Score=55.10 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+-+|++++|.|++|+|||||+..|++.
T Consensus 342 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~ 372 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372 (547)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3367889999999999999999999998764
No 431
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=90.34 E-value=1.8 Score=40.53 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=23.4
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+|-.+.+.|.+|+||||++..+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999987764
No 432
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.20 E-value=5.2 Score=36.83 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=18.8
Q ss_pred EEeccCCCCChhHHHHHHHHHh
Q 011320 163 IPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+.|++|+|||+++..++...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6788999999999998887654
No 433
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.11 E-value=2.4 Score=43.95 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=24.2
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.+|+.+++.|++|+||||++..+|...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999988764
No 434
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=90.07 E-value=0.24 Score=56.26 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=28.5
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|.=+.+-+|++++|.|++|+|||||+..|++..
T Consensus 483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344778999999999999999999999997643
No 435
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=0.84 Score=48.69 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=34.6
Q ss_pred cceecceeeeeeee--ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 142 EMIQTGISTIDVMN--SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~--pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+.||+.-+|=.+ -+.+|.-++|-|.||.|||||+-+++.+.
T Consensus 73 ~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~l 117 (456)
T COG1066 73 PRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 117 (456)
T ss_pred ccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHH
Confidence 34668887777554 46899999999999999999998877664
No 436
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=90.05 E-value=0.26 Score=53.76 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=28.8
Q ss_pred eee-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TID-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++ .=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 53 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN 53 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 453 3478999999999999999999999998653
No 437
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=90.02 E-value=0.24 Score=53.99 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=26.8
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 271 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G 300 (501)
T PRK10762 271 VSFTLRKGEILGVSGLMGAGRTELMKVLYG 300 (501)
T ss_pred ceEEEcCCcEEEEecCCCCCHHHHHHHHhC
Confidence 336889999999999999999999999864
No 438
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=90.01 E-value=0.25 Score=53.94 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=29.8
Q ss_pred eeeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 148 ISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 148 I~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.++++ .=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 275 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 310 (506)
T PRK13549 275 IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG 310 (506)
T ss_pred cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhC
Confidence 34664 347899999999999999999999999964
No 439
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=89.93 E-value=0.24 Score=54.91 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=27.4
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
=+.+-+|++++|.|++|+|||||+..|+...
T Consensus 335 ~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3678899999999999999999999987643
No 440
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=89.93 E-value=0.25 Score=53.64 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=26.7
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.=+.+.+|+.++|.|++|+|||||+..|+.
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 336788999999999999999999999864
No 441
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=89.80 E-value=3 Score=38.84 Aligned_cols=87 Identities=20% Similarity=0.122 Sum_probs=53.1
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEE
Q 011320 159 RGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLF 238 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv 238 (488)
||--+-|.|-+|+|||||...+.+.-.. . ...+|.+=|.. +.+.+.. +
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~-------------~----g~~~~~LDgD~------lR~~l~~-d-------- 48 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFA-------------R----GIKVYLLDGDN------LRHGLNA-D-------- 48 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHH-------------T----TS-EEEEEHHH------HCTTTTT-T--------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH-------------c----CCcEEEecCcc------hhhccCC-C--------
Confidence 4667889999999999999888765421 0 15566666641 1111211 1
Q ss_pred EeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhH
Q 011320 239 LNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSY 281 (488)
Q Consensus 239 ~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~ 281 (488)
-.-+...|..-+.-..-+|..|. ++|..|++-+-|.++-
T Consensus 49 ---l~fs~~dR~e~~rr~~~~A~ll~-~~G~ivIva~isp~~~ 87 (156)
T PF01583_consen 49 ---LGFSKEDREENIRRIAEVAKLLA-DQGIIVIVAFISPYRE 87 (156)
T ss_dssp -----SSHHHHHHHHHHHHHHHHHHH-HTTSEEEEE----SHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHH-hCCCeEEEeeccCchH
Confidence 12345667777777778889999 8998888777666543
No 442
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=89.77 E-value=0.25 Score=54.43 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=28.5
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|.=+.+-+|++++|.|++|+|||||+..++...
T Consensus 336 ~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 336 GISFRLQAGEALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344788899999999999999999999987653
No 443
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=89.74 E-value=0.25 Score=53.87 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=26.5
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.+-+|++++|.|++|+|||||+..|+..
T Consensus 274 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G~ 302 (501)
T PRK11288 274 FSVRAGEIVGLFGLVGAGRSELMKLLYGA 302 (501)
T ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHcCC
Confidence 68999999999999999999999998643
No 444
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.71 E-value=0.98 Score=46.91 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=52.8
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecC-chHHHHHHHHhhccCCCcceEEEEE
Q 011320 161 QKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV-NMETAQFFKRDFEENGSMERVTLFL 239 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe-r~e~~~~~~~~l~~~~~~~~tvvv~ 239 (488)
--+++.|-.|+||||-++.+|++-.. .+.-++++++.- |.--.+.+...-+..| .-+|.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~----------------~g~~VllaA~DTFRAaAiEQL~~w~er~g----v~vI~ 199 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQ----------------QGKSVLLAAGDTFRAAAIEQLEVWGERLG----VPVIS 199 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHH----------------CCCeEEEEecchHHHHHHHHHHHHHHHhC----CeEEc
Confidence 34789999999999999999988631 122566666665 4333343332222222 23444
Q ss_pred -eCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEE
Q 011320 240 -NLANDPTIERIITPRIALTTAEYLAYECGKHVLVI 274 (488)
Q Consensus 240 -~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli 274 (488)
....+|+. .+|-|+.-|. .+|.||+++
T Consensus 200 ~~~G~DpAa----VafDAi~~Ak----ar~~Dvvli 227 (340)
T COG0552 200 GKEGADPAA----VAFDAIQAAK----ARGIDVVLI 227 (340)
T ss_pred cCCCCCcHH----HHHHHHHHHH----HcCCCEEEE
Confidence 34666665 4555555554 789999876
No 445
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.70 E-value=2.7 Score=43.51 Aligned_cols=102 Identities=11% Similarity=0.213 Sum_probs=54.9
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCc---hHHHHHHHHhhccCCCcce
Q 011320 158 ARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVN---METAQFFKRDFEENGSMER 234 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer---~e~~~~~~~~l~~~~~~~~ 234 (488)
++++.+.|.|++|+|||+++..+.++..... + ..+.....+|+-|-+- .+....+.+.+...+. +
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-----~-----~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~- 105 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-----E-----DRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGE-E- 105 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-----h-----ccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCC-C-
Confidence 3456799999999999999988877642100 0 0011135666666543 2333444454532110 0
Q ss_pred EEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHH
Q 011320 235 VTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYA 282 (488)
Q Consensus 235 tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a 282 (488)
......+....+ -.+-+++. ..++.++|++|.+-.+.
T Consensus 106 ----~~~~~~~~~~~~------~~l~~~l~-~~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 106 ----VPTTGLSTSEVF------RRLYKELN-ERGDSLIIVLDEIDYLV 142 (365)
T ss_pred ----CCCCCCCHHHHH------HHHHHHHH-hcCCeEEEEECchhhhc
Confidence 001111211111 12334455 56889999999987775
No 446
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=89.53 E-value=0.31 Score=53.89 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=27.7
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
=+.+-+|++++|.|++|+|||||+..|+...
T Consensus 360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3789999999999999999999999987653
No 447
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=89.42 E-value=0.31 Score=53.73 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=28.2
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|.=+.+-+|++++|.|++|+|||||+..|+...
T Consensus 350 ~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 350 SISLVIEPGETVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred CeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344678899999999999999999999987653
No 448
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=89.38 E-value=0.16 Score=55.29 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=30.8
Q ss_pred cccceecce-eeee-eeeecccCcEEEeccCCCCChhHHHH
Q 011320 140 PEEMIQTGI-STID-VMNSIARGQKIPLFSAAGLPHNEIAA 178 (488)
Q Consensus 140 ~~~~l~TGI-~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~ 178 (488)
+..++++.. +++| .-+.+-+|+.++|.|++|+|||||+.
T Consensus 10 i~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 10 VKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred echHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 455556653 4554 35789999999999999999999997
No 449
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=89.36 E-value=0.32 Score=45.75 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.8
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011320 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.|..+.|.|++|+|||||+..++...+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999999987654
No 450
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=89.36 E-value=0.28 Score=54.55 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=27.4
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+-+|++++|.|++|+|||||+..|++..
T Consensus 361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 688999999999999999999999997754
No 451
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=89.29 E-value=0.28 Score=54.26 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.3
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+.+-+|++++|+|++|+|||||+..|++..
T Consensus 363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~ 392 (555)
T TIGR01194 363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLY 392 (555)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 688999999999999999999999997643
No 452
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=89.25 E-value=0.32 Score=53.92 Aligned_cols=30 Identities=13% Similarity=0.199 Sum_probs=27.0
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.=+.+.+|.+++|.|++|+|||||+.+|+.
T Consensus 343 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G 372 (556)
T PRK11819 343 LSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372 (556)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 447889999999999999999999999964
No 453
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=89.24 E-value=0.34 Score=53.53 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 43 VSfsI~~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred eEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3468899999999999999999999998654
No 454
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=89.21 E-value=0.4 Score=45.73 Aligned_cols=33 Identities=0% Similarity=0.016 Sum_probs=27.3
Q ss_pred eeeeeeeecccCcE-EEeccCCCCChhHHHHHHH
Q 011320 149 STIDVMNSIARGQK-IPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 149 ~aID~l~pig~Gqr-~gIfg~~G~GKt~Ll~~i~ 181 (488)
..++.=+.+..|.| +.|.|+.|+|||||+.+|+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 34555567888865 9999999999999999987
No 455
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=89.16 E-value=0.3 Score=53.42 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=25.9
Q ss_pred eecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 155 NSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 155 ~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+.+-+|++++|.|++|+|||||+..|+.
T Consensus 284 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G 311 (510)
T PRK15439 284 LEVRAGEILGLAGVVGAGRTELAETLYG 311 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 6788999999999999999999999864
No 456
>PRK13409 putative ATPase RIL; Provisional
Probab=89.13 E-value=0.3 Score=54.64 Aligned_cols=34 Identities=6% Similarity=0.131 Sum_probs=28.5
Q ss_pred eeeeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 150 aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+++.+..+-+|+.+||.|+.|+|||||+..|+..
T Consensus 89 ~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~ 122 (590)
T PRK13409 89 KLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGE 122 (590)
T ss_pred eEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4555556889999999999999999999998653
No 457
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.13 E-value=0.83 Score=46.16 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.3
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011320 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.+-+.+.|++|+|||+|+..+++..+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35589999999999999999988754
No 458
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=89.09 E-value=0.48 Score=45.24 Aligned_cols=27 Identities=7% Similarity=0.014 Sum_probs=23.7
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 156 SIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+.+|.++.|.|+.|+|||||+.+|+.
T Consensus 25 ~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 25 NLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 355789999999999999999999873
No 459
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=0.92 Score=47.89 Aligned_cols=100 Identities=15% Similarity=0.220 Sum_probs=64.1
Q ss_pred eeeecccCcE---EEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecC---chHHHHHHHHhh
Q 011320 153 VMNSIARGQK---IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV---NMETAQFFKRDF 226 (488)
Q Consensus 153 ~l~pig~Gqr---~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe---r~e~~~~~~~~l 226 (488)
.|.|.-+|.+ +.|-|++|+|||..+..+.++..... ....++|+=|=+ +......+.+.+
T Consensus 32 ~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~--------------~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 32 FLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS--------------ANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred HHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh--------------ccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 3555555554 88999999999999999888764211 111267777754 356666666666
Q ss_pred ccCCCcceEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhHHH
Q 011320 227 EENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYAD 283 (488)
Q Consensus 227 ~~~~~~~~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~a~ 283 (488)
. ..|.........=..+-+++. .+++.+++++|.+-....
T Consensus 98 ~----------------~~p~~g~~~~~~~~~l~~~~~-~~~~~~IvvLDEid~L~~ 137 (366)
T COG1474 98 G----------------KVPLTGDSSLEILKRLYDNLS-KKGKTVIVILDEVDALVD 137 (366)
T ss_pred C----------------CCCCCCCchHHHHHHHHHHHH-hcCCeEEEEEcchhhhcc
Confidence 4 222222222333345577777 789999999998766543
No 460
>PLN03073 ABC transporter F family; Provisional
Probab=89.05 E-value=0.32 Score=55.78 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=27.4
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.=+.+.+|.+++|.|++|+|||||+..|+..
T Consensus 528 vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl 558 (718)
T PLN03073 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGE 558 (718)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3368899999999999999999999998653
No 461
>PRK03839 putative kinase; Provisional
Probab=89.05 E-value=0.35 Score=45.04 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=22.6
Q ss_pred EEEeccCCCCChhHHHHHHHHHhcc
Q 011320 162 KIPLFSAAGLPHNEIAAQICRQAGL 186 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~~ 186 (488)
++.|+|.+|+||||+...+++..+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999998763
No 462
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=89.04 E-value=1 Score=47.76 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=21.3
Q ss_pred EEeccCCCCChhHHHHHHHHHhc
Q 011320 163 IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+||+||+|+|||.++..+++..+
T Consensus 151 llL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999876
No 463
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=89.03 E-value=0.31 Score=54.36 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=27.4
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
=+.+-+|++++|.|++|+|||||+..|+...
T Consensus 355 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 385 (585)
T TIGR01192 355 SFEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385 (585)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHccCC
Confidence 3678899999999999999999999987653
No 464
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=88.96 E-value=0.38 Score=44.91 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=26.1
Q ss_pred eeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 154 MNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 154 l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-+||.+|.-+-+.||+|+|||||+.-++-.
T Consensus 22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~ 51 (213)
T COG4136 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGA 51 (213)
T ss_pred eEEecCCcEEEEECCCCccHHHHHHHHHhh
Confidence 368999999999999999999998776544
No 465
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=88.94 E-value=0.33 Score=53.29 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=29.0
Q ss_pred eeeee-eeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 149 STIDV-MNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aID~-l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.+++- =+.+-+|+.++|.|++|+|||||+..|+.
T Consensus 300 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 334 (529)
T PRK15134 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334 (529)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45543 36899999999999999999999999864
No 466
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=88.92 E-value=0.34 Score=55.31 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=28.8
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
|.=+.+-+|++++|.|++|+|||||++.|.+..
T Consensus 499 ~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred CceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 444789999999999999999999999987654
No 467
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.91 E-value=0.36 Score=47.38 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=28.6
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
|.-+.+-+++-..++||+||||||++..+.|-..
T Consensus 25 ~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 25 DINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred cCceeccCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 4446788999999999999999999999866543
No 468
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.81 E-value=0.27 Score=52.60 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=37.3
Q ss_pred cceecceeeeeeee-ecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 142 EMIQTGISTIDVMN-SIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 142 ~~l~TGI~aID~l~-pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
..+.||+..+|-++ -+-+|+=+.|-|.+|+|||+++.+++.+.
T Consensus 176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~ 219 (434)
T TIGR00665 176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENA 219 (434)
T ss_pred CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHH
Confidence 44789999999876 47789999999999999999999887764
No 469
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=88.81 E-value=0.41 Score=44.37 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=22.5
Q ss_pred CcEEEeccCCCCChhHHHHHHHHHhc
Q 011320 160 GQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
...+.|+|++|+||||++..+++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999987765
No 470
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=88.68 E-value=0.44 Score=49.04 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=30.6
Q ss_pred ceeeee-eeeecccCcEEEeccCCCCChhHHHHHHH
Q 011320 147 GISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQIC 181 (488)
Q Consensus 147 GI~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~ 181 (488)
.+.++| .=+.+-+|+..||+|.||.|||||+..|.
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN 53 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN 53 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHh
Confidence 467775 66899999999999999999999998873
No 471
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=88.66 E-value=0.33 Score=45.95 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.0
Q ss_pred EEeccCCCCChhHHHHHHHHH
Q 011320 163 IPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+||.|++|+|||||+..|+..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998765
No 472
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=88.62 E-value=0.38 Score=49.45 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=26.0
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.-+.|--|+.+++.|++|+|||||+..||-
T Consensus 21 i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 21 ISLDIKSGELVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred ceeeecCCcEEEEECCCCCcHHHHHHHHhC
Confidence 445677999999999999999999999853
No 473
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=88.60 E-value=0.22 Score=49.46 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=33.8
Q ss_pred eecceeeeeeee-ecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011320 144 IQTGISTIDVMN-SIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 144 l~TGI~aID~l~-pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.||++.+|-++ -+.+|+=+.|-|.+|+|||+++.+++.+..
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a 44 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAA 44 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHH
Confidence 579999998665 577888899999999999999999988764
No 474
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=88.54 E-value=0.35 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.7
Q ss_pred EEEeccCCCCChhHHHHHHHHHhc
Q 011320 162 KIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 162 r~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
|+.|+|++|+||||+...|+...+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988755
No 475
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=88.47 E-value=0.32 Score=44.24 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=22.6
Q ss_pred cccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 157 IARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 157 ig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
-.+--|++|+|++|+|||+|+..+...
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 345568999999999999999998653
No 476
>PRK09183 transposase/IS protein; Provisional
Probab=88.45 E-value=0.29 Score=49.06 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=27.6
Q ss_pred eeeeeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 150 TIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 150 aID~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.++.+.-+.+|+.+.|+|++|+|||+|+..|+...
T Consensus 92 ~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 92 SLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred HHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 33333337889999999999999999998886653
No 477
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=88.44 E-value=0.44 Score=52.62 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=37.8
Q ss_pred CCCCcccceecceeeee-eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 136 ERTYPEEMIQTGISTID-VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 136 ~R~~~~~~l~TGI~aID-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
++.++..|-. |...|+ .-+-+-.||.++|.|++|+|||.|+.+++-
T Consensus 437 e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlgg 483 (659)
T KOG0060|consen 437 EEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGG 483 (659)
T ss_pred eeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhc
Confidence 4555566544 888897 557899999999999999999999998854
No 478
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=88.41 E-value=0.36 Score=53.44 Aligned_cols=30 Identities=10% Similarity=0.162 Sum_probs=26.7
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.=+.+-+|++++|.|++|+|||||+..|+.
T Consensus 341 isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G 370 (552)
T TIGR03719 341 LSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370 (552)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 336789999999999999999999999864
No 479
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.31 E-value=3.9 Score=44.11 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=22.6
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 158 ARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.++..+.+.|++|+||||++..++...
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345669999999999999999998643
No 480
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=88.27 E-value=0.46 Score=37.56 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEeccCCCCChhHHHHHHHHH
Q 011320 163 IPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
+.|.|++|+||||++..+++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998876
No 481
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=88.24 E-value=0.38 Score=53.49 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=27.8
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
.=+.+-+|++++|.|++|+|||||++-|+...
T Consensus 354 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 354 VSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 33688999999999999999999999986653
No 482
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.24 E-value=0.47 Score=43.19 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=24.4
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhc
Q 011320 159 RGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
++..+.+.|++|+||||+...+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 577899999999999999999988765
No 483
>COG0218 Predicted GTPase [General function prediction only]
Probab=88.20 E-value=9.9 Score=36.86 Aligned_cols=122 Identities=18% Similarity=0.294 Sum_probs=70.9
Q ss_pred cCcEEEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecC---------------chHHHH---
Q 011320 159 RGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGV---------------NMETAQ--- 220 (488)
Q Consensus 159 ~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGe---------------r~e~~~--- 220 (488)
.+--+.+.|.|.||||+|+..|+++-+.+. .-..++-+..+-|--++. ..++.+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LAr--------tSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLAR--------TSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceee--------cCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHH
Confidence 445678889999999999999988653221 111122222222222211 112222
Q ss_pred -HHHHhhccCCCcceEEEEEeCCCCCHH-HHHhHHHHHHHHHHHhhHhcCCeEEEEEcc---hhh--HHHHHHHHHHhcC
Q 011320 221 -FFKRDFEENGSMERVTLFLNLANDPTI-ERIITPRIALTTAEYLAYECGKHVLVILTD---MSS--YADALREVSAARE 293 (488)
Q Consensus 221 -~~~~~l~~~~~~~~tvvv~~t~~~~~~-~r~~a~~~a~tiAEyfr~d~G~~Vlli~Ds---ltr--~a~A~rEisl~~g 293 (488)
.+.+-|....-++..++++..-..+-. .+ -+-||+. +.|..+++++.= +.+ |.....++...++
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--------em~~~l~-~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~ 165 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR--------EMIEFLL-ELGIPVIVVLTKADKLKKSERNKQLNKVAEELK 165 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHH--------HHHHHHH-HcCCCeEEEEEccccCChhHHHHHHHHHHHHhc
Confidence 233444554447777777766555444 33 6789999 899999999744 443 5555566765555
Q ss_pred CCCC
Q 011320 294 EVPG 297 (488)
Q Consensus 294 e~p~ 297 (488)
-.|.
T Consensus 166 ~~~~ 169 (200)
T COG0218 166 KPPP 169 (200)
T ss_pred CCCC
Confidence 5553
No 484
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=88.20 E-value=0.4 Score=52.86 Aligned_cols=125 Identities=14% Similarity=0.067 Sum_probs=69.9
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHHhc----ccccccccccc------------cccCCCCCeEEEEEEecCc
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAG----LVKRLEKTDNL------------LEDGEEDNFAIVFAAMGVN 215 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~----~~~~~~~~d~~------------~~~~~~~~~~~V~~~iGer 215 (488)
|.-+++-+||++.|.|.+|+|||||++.|+.... .+. +++.|-. .++|+ -+..-+-|.|.
T Consensus 339 ~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~-vng~~l~~l~~~~~~k~i~~v~Q~---p~lf~gTireN 414 (559)
T COG4988 339 DLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIR-VNGIDLRDLSPEAWRKQISWVSQN---PYLFAGTIREN 414 (559)
T ss_pred CceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEE-ECCccccccCHHHHHhHeeeeCCC---CccccccHHHH
Confidence 5568899999999999999999999999865432 111 1111100 01111 12222223331
Q ss_pred ------hHHHHHHHHhhccCCC---cc-----eEEEEEeCCCCCHHHHHhHHHHHHHHHHHhhHhcCCeEEEEEcchhhH
Q 011320 216 ------METAQFFKRDFEENGS---ME-----RVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSY 281 (488)
Q Consensus 216 ------~e~~~~~~~~l~~~~~---~~-----~tvvv~~t~~~~~~~r~~a~~~a~tiAEyfr~d~G~~Vlli~Dsltr~ 281 (488)
...-+.+.+.++..++ .+ .+.+=-+...-|.+.+-|.+ +|.-|- .+ .=++++|.-|-+
T Consensus 415 i~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRla-----LARAll-~~--~~l~llDEpTA~ 486 (559)
T COG4988 415 ILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLA-----LARALL-SP--ASLLLLDEPTAH 486 (559)
T ss_pred hhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHH-----HHHHhc-CC--CCEEEecCCccC
Confidence 0111333333333221 11 34555566777888877754 355555 33 456778988888
Q ss_pred HHHHHHH
Q 011320 282 ADALREV 288 (488)
Q Consensus 282 a~A~rEi 288 (488)
-++..|-
T Consensus 487 LD~etE~ 493 (559)
T COG4988 487 LDAETEQ 493 (559)
T ss_pred CCHhHHH
Confidence 8888764
No 485
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=88.17 E-value=0.39 Score=52.19 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=27.9
Q ss_pred eeeee-eecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 150 TIDVM-NSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 150 aID~l-~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++.+ +.+.+|++++|.|++|+|||||+..|+.
T Consensus 263 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~G 296 (491)
T PRK10982 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFG 296 (491)
T ss_pred ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcC
Confidence 44433 6899999999999999999999999864
No 486
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.17 E-value=1 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=22.0
Q ss_pred cEEEeccCCCCChhHHHHHHHHHhc
Q 011320 161 QKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 161 qr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
..+.+.|++|+|||+|+..+++..+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhC
Confidence 4589999999999999999988764
No 487
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=88.10 E-value=0.39 Score=53.12 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=28.8
Q ss_pred eeeecccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011320 153 VMNSIARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 153 ~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
.=+.+-+|++++|.|++|+|||||+.-+.+...
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~ 380 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD 380 (567)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 446689999999999999999999999987654
No 488
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=88.07 E-value=0.49 Score=37.27 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=18.3
Q ss_pred CcEEEeccCCCCChhHHHHHH
Q 011320 160 GQKIPLFSAAGLPHNEIAAQI 180 (488)
Q Consensus 160 Gqr~gIfg~~G~GKt~Ll~~i 180 (488)
|.-.+|.|+.|+|||||+..|
T Consensus 23 g~~tli~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAI 43 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 447899999999999999776
No 489
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=88.02 E-value=0.46 Score=47.65 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=28.5
Q ss_pred eee-eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
.++ |.=+.+-+|.-++|+||.|.|||||+..|.-
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 355 4457899999999999999999999988754
No 490
>PTZ00088 adenylate kinase 1; Provisional
Probab=87.90 E-value=0.49 Score=46.63 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.6
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhc
Q 011320 158 ARGQKIPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
....|+.|+|++|+||||+...+++..+
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4457899999999999999999998765
No 491
>PTZ00301 uridine kinase; Provisional
Probab=87.73 E-value=0.42 Score=46.47 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEeccCCCCChhHHHHHHHHHh
Q 011320 163 IPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+||-|+||+|||||...|+++.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 7999999999999998887653
No 492
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=87.71 E-value=0.43 Score=47.61 Aligned_cols=34 Identities=9% Similarity=0.235 Sum_probs=28.2
Q ss_pred eee-eeeeecccCcEEEeccCCCCChhHHHHHHHH
Q 011320 149 STI-DVMNSIARGQKIPLFSAAGLPHNEIAAQICR 182 (488)
Q Consensus 149 ~aI-D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~ 182 (488)
+++ |.=-++-.|+++.|.|+.|+|||||+..++.
T Consensus 45 ~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~ 79 (257)
T COG1119 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG 79 (257)
T ss_pred eeccccceeecCCCcEEEECCCCCCHHHHHHHHhc
Confidence 344 3446789999999999999999999999854
No 493
>PRK14527 adenylate kinase; Provisional
Probab=87.71 E-value=0.52 Score=44.49 Aligned_cols=29 Identities=14% Similarity=0.365 Sum_probs=25.6
Q ss_pred ccCcEEEeccCCCCChhHHHHHHHHHhcc
Q 011320 158 ARGQKIPLFSAAGLPHNEIAAQICRQAGL 186 (488)
Q Consensus 158 g~Gqr~gIfg~~G~GKt~Ll~~i~~~~~~ 186 (488)
-+|..+.++|++|+||||+...+++..+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47889999999999999999999887663
No 494
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=87.68 E-value=0.44 Score=47.90 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=25.0
Q ss_pred eeeeee-cccCcEEEeccCCCCChhHHHHHHHHHh
Q 011320 151 IDVMNS-IARGQKIPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 151 ID~l~p-ig~Gqr~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
++.+.| -|+..++||.|++|+|||||+..+++..
T Consensus 19 l~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 19 LKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 334444 4788999999999999999998876654
No 495
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.60 E-value=0.48 Score=50.91 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=25.0
Q ss_pred ecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 156 SIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 156 pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
.+.+|+++++.|+.|+||||++..|+..
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999988764
No 496
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=87.59 E-value=0.48 Score=45.25 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=28.3
Q ss_pred eeeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 152 DVMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 152 D~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
|.-+.+-.|+-.||.|.+|+|||||++.|+..
T Consensus 24 ~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r 55 (258)
T COG4107 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGR 55 (258)
T ss_pred ccceeecCCcEEEEEecCCCcHHhHHHHHhcc
Confidence 55678999999999999999999999988654
No 497
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=87.57 E-value=0.58 Score=44.80 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=28.2
Q ss_pred cceeee-e-eeeecccCcEEEeccCCCCChhHHHHHHHHH
Q 011320 146 TGISTI-D-VMNSIARGQKIPLFSAAGLPHNEIAAQICRQ 183 (488)
Q Consensus 146 TGI~aI-D-~l~pig~Gqr~gIfg~~G~GKt~Ll~~i~~~ 183 (488)
++.|.. + .-+++.+| ..+|.|++|+|||||+..|+--
T Consensus 7 ~~fr~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 7 KGFKSFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred eCCcCcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 444555 2 33567888 9999999999999999988643
No 498
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=87.55 E-value=0.43 Score=46.58 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=19.3
Q ss_pred EEeccCCCCChhHHHHHHHHHh
Q 011320 163 IPLFSAAGLPHNEIAAQICRQA 184 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~ 184 (488)
+||.|++|+|||||+..|+...
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999987653
No 499
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=87.51 E-value=3.8 Score=43.53 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=66.0
Q ss_pred EEeccCCCCChhHHHHHHHHHhcccccccccccccccCCCCCeEEEEEEecCchHHHHHHHHhhccCCCcceEEEEEeCC
Q 011320 163 IPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLA 242 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~V~~~iGer~e~~~~~~~~l~~~~~~~~tvvv~~t~ 242 (488)
+-|+|.+|+|||.++.+.-+..+ .-.|+.-|=|-...+..++.-+...+ ++
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~n-------------------~~~vw~n~~ecft~~~lle~IL~~~~----------~~ 83 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVRQLLRKLN-------------------LENVWLNCVECFTYAILLEKILNKSQ----------LA 83 (438)
T ss_pred EEEeccCCCchhHHHHHHHhhcC-------------------CcceeeehHHhccHHHHHHHHHHHhc----------cC
Confidence 36899999999999988766542 13566666554444444444443322 34
Q ss_pred CCCHHHHHhHHHHHHHHHHHhhH-----hcCCeEEEEEcchhhHHHHHHHHHHhcCCCCCCCCCCCchhhhHHHHHHhhc
Q 011320 243 NDPTIERIITPRIALTTAEYLAY-----ECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLAQIYERAG 317 (488)
Q Consensus 243 ~~~~~~r~~a~~~a~tiAEyfr~-----d~G~~Vlli~Dsltr~a~A~rEisl~~ge~p~~~gyp~~lfs~l~~l~ERag 317 (488)
|.++..-......-++.-+-|+. ..++.|++++|+ |++.|+ +++-+|..+.+|+|=+-
T Consensus 84 d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDn----ad~lrD-------------~~a~ll~~l~~L~el~~ 146 (438)
T KOG2543|consen 84 DKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDN----ADALRD-------------MDAILLQCLFRLYELLN 146 (438)
T ss_pred CCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcC----HHhhhc-------------cchHHHHHHHHHHHHhC
Confidence 44443333323333444444441 236799999998 455553 34568999999999664
No 500
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=87.43 E-value=1.1 Score=39.65 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEeccCCCCChhHHHHHHHHHhc
Q 011320 163 IPLFSAAGLPHNEIAAQICRQAG 185 (488)
Q Consensus 163 ~gIfg~~G~GKt~Ll~~i~~~~~ 185 (488)
+.+.|++|+|||+|+..+++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 57899999999999999988764
Done!