Query 011323
Match_columns 488
No_of_seqs 629 out of 3114
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 00:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.1E-70 2.5E-75 545.1 59.6 463 22-484 367-829 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 3.7E-62 8E-67 484.6 56.0 428 33-467 414-872 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 7.1E-61 1.5E-65 484.4 47.3 439 28-487 151-665 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.2E-57 2.5E-62 450.4 47.6 431 37-484 135-569 (697)
5 PLN03081 pentatricopeptide (PP 100.0 2.1E-57 4.6E-62 448.5 47.2 428 31-475 93-527 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 9.7E-57 2.1E-61 454.3 46.7 441 26-477 52-624 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-28 3.4E-33 254.8 55.5 435 24-474 430-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-27 2.2E-32 248.7 55.8 433 21-469 461-898 (899)
9 PRK11447 cellulose synthase su 99.9 8.5E-22 1.8E-26 205.1 47.3 429 33-478 277-750 (1157)
10 KOG4626 O-linked N-acetylgluco 99.9 2.4E-22 5.2E-27 178.9 35.6 434 26-477 49-491 (966)
11 PRK11447 cellulose synthase su 99.9 2.3E-20 4.9E-25 194.5 51.1 421 38-476 160-705 (1157)
12 PRK11788 tetratricopeptide rep 99.9 1.4E-21 3.1E-26 181.9 35.1 302 101-410 44-354 (389)
13 PRK11788 tetratricopeptide rep 99.9 3.4E-21 7.3E-26 179.4 36.0 303 134-445 42-354 (389)
14 KOG4626 O-linked N-acetylgluco 99.9 4.6E-21 9.9E-26 170.9 33.5 388 37-445 94-490 (966)
15 PRK15174 Vi polysaccharide exp 99.9 1.1E-19 2.3E-24 177.3 46.1 326 99-437 49-380 (656)
16 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-19 4.1E-24 176.3 46.4 395 32-438 134-571 (615)
17 PRK15174 Vi polysaccharide exp 99.9 1.7E-19 3.8E-24 175.9 45.0 328 31-369 48-382 (656)
18 PRK10049 pgaA outer membrane p 99.9 1.8E-19 3.9E-24 179.6 45.9 405 27-445 16-461 (765)
19 PRK14574 hmsH outer membrane p 99.9 2.6E-18 5.6E-23 168.1 50.5 444 21-477 30-519 (822)
20 TIGR00990 3a0801s09 mitochondr 99.9 3.3E-18 7.2E-23 167.6 50.1 398 66-474 132-574 (615)
21 PRK10049 pgaA outer membrane p 99.9 1.4E-18 3.1E-23 173.2 44.2 417 45-477 2-462 (765)
22 KOG4422 Uncharacterized conser 99.9 3.3E-17 7.1E-22 140.2 43.8 434 10-454 101-606 (625)
23 PRK09782 bacteriophage N4 rece 99.9 1.5E-16 3.2E-21 159.1 49.6 179 37-225 56-275 (987)
24 PRK09782 bacteriophage N4 rece 99.8 3.2E-15 7E-20 149.7 51.8 435 28-477 185-712 (987)
25 PRK14574 hmsH outer membrane p 99.8 6.6E-16 1.4E-20 151.4 44.6 419 18-446 61-519 (822)
26 KOG2002 TPR-containing nuclear 99.8 3.8E-16 8.2E-21 147.0 38.8 404 37-451 319-758 (1018)
27 KOG2002 TPR-containing nuclear 99.8 1.9E-15 4.1E-20 142.4 41.2 451 20-477 265-751 (1018)
28 KOG2003 TPR repeat-containing 99.8 7.8E-17 1.7E-21 139.1 25.4 425 37-470 213-721 (840)
29 KOG2076 RNA polymerase III tra 99.8 2.9E-13 6.3E-18 127.0 44.2 368 28-400 142-552 (895)
30 KOG1915 Cell cycle control pro 99.7 9E-13 1.9E-17 114.9 41.3 421 37-472 85-537 (677)
31 PF13429 TPR_15: Tetratricopep 99.7 1.1E-16 2.4E-21 141.1 14.3 263 27-297 10-276 (280)
32 TIGR00540 hemY_coli hemY prote 99.7 1.8E-13 3.9E-18 126.9 35.1 292 72-366 95-397 (409)
33 KOG2076 RNA polymerase III tra 99.7 1.3E-12 2.7E-17 122.8 39.7 361 71-436 149-553 (895)
34 KOG2003 TPR repeat-containing 99.7 4.8E-14 1E-18 122.1 27.3 389 22-424 234-709 (840)
35 KOG4422 Uncharacterized conser 99.7 7.8E-13 1.7E-17 113.9 34.1 361 62-428 208-615 (625)
36 KOG1155 Anaphase-promoting com 99.7 2.8E-12 6E-17 111.6 37.2 294 134-437 234-535 (559)
37 KOG0495 HAT repeat protein [RN 99.7 2.9E-11 6.4E-16 109.8 44.3 396 24-435 375-779 (913)
38 PRK10747 putative protoheme IX 99.7 3.2E-13 6.8E-18 124.6 33.2 282 73-367 96-389 (398)
39 PRK10747 putative protoheme IX 99.7 4.4E-13 9.6E-18 123.7 34.0 283 105-400 97-387 (398)
40 PF13429 TPR_15: Tetratricopep 99.7 2.6E-16 5.7E-21 138.7 12.2 258 99-364 15-273 (280)
41 KOG1155 Anaphase-promoting com 99.7 1.3E-11 2.9E-16 107.5 39.7 294 168-469 233-534 (559)
42 KOG1915 Cell cycle control pro 99.7 5.6E-12 1.2E-16 110.1 37.3 399 27-438 105-536 (677)
43 COG2956 Predicted N-acetylgluc 99.7 3.5E-13 7.6E-18 111.8 28.3 278 26-314 37-325 (389)
44 TIGR00540 hemY_coli hemY prote 99.7 1.2E-12 2.5E-17 121.6 34.6 287 104-399 96-395 (409)
45 COG2956 Predicted N-acetylgluc 99.7 2.7E-12 5.9E-17 106.6 31.8 289 105-402 48-346 (389)
46 KOG0547 Translocase of outer m 99.7 3E-12 6.5E-17 112.2 33.0 388 33-437 123-565 (606)
47 KOG0495 HAT repeat protein [RN 99.6 7.4E-10 1.6E-14 100.9 48.0 434 26-477 407-852 (913)
48 KOG1126 DNA-binding cell divis 99.6 3.3E-13 7.2E-18 122.7 24.9 290 142-444 334-626 (638)
49 COG3071 HemY Uncharacterized e 99.6 8.7E-12 1.9E-16 106.9 31.6 287 105-401 97-388 (400)
50 KOG2047 mRNA splicing factor [ 99.6 2.3E-10 5E-15 103.9 40.9 413 33-452 110-630 (835)
51 KOG1126 DNA-binding cell divis 99.6 2.6E-12 5.6E-17 117.0 27.9 199 196-402 420-619 (638)
52 COG3071 HemY Uncharacterized e 99.6 5.4E-11 1.2E-15 102.1 32.9 287 140-438 97-390 (400)
53 KOG2376 Signal recognition par 99.5 6.9E-09 1.5E-13 93.7 42.8 423 27-473 14-522 (652)
54 KOG1173 Anaphase-promoting com 99.5 1.1E-10 2.4E-15 104.5 30.9 375 69-455 149-533 (611)
55 KOG1173 Anaphase-promoting com 99.5 1.8E-10 3.9E-15 103.1 32.1 288 123-420 240-533 (611)
56 KOG0547 Translocase of outer m 99.5 1E-09 2.2E-14 96.6 32.8 219 245-472 337-567 (606)
57 PRK12370 invasion protein regu 99.5 6.3E-11 1.4E-15 114.4 27.5 249 73-334 273-536 (553)
58 TIGR02521 type_IV_pilW type IV 99.5 1.4E-10 3E-15 99.9 26.3 198 236-437 33-231 (234)
59 KOG4318 Bicoid mRNA stability 99.5 3E-11 6.5E-16 113.4 22.6 252 114-389 12-286 (1088)
60 KOG1174 Anaphase-promoting com 99.5 2.4E-08 5.1E-13 86.4 38.2 401 30-444 48-504 (564)
61 KOG1129 TPR repeat-containing 99.4 3.6E-11 7.7E-16 100.2 20.0 228 202-437 228-457 (478)
62 PF12569 NARP1: NMDA receptor- 99.4 2.2E-09 4.8E-14 100.2 34.4 291 68-366 11-332 (517)
63 PRK12370 invasion protein regu 99.4 4.9E-10 1.1E-14 108.3 30.7 260 194-464 253-529 (553)
64 TIGR02521 type_IV_pilW type IV 99.4 3.2E-10 6.9E-15 97.6 26.8 196 129-329 33-228 (234)
65 KOG1156 N-terminal acetyltrans 99.4 1.9E-08 4.1E-13 92.0 37.9 387 37-438 19-434 (700)
66 PF12569 NARP1: NMDA receptor- 99.4 3.4E-09 7.4E-14 99.0 33.3 290 136-437 13-333 (517)
67 KOG1156 N-terminal acetyltrans 99.4 9.1E-08 2E-12 87.7 40.6 388 37-440 53-470 (700)
68 KOG1129 TPR repeat-containing 99.4 1.3E-10 2.9E-15 96.9 19.3 233 161-402 222-457 (478)
69 KOG4318 Bicoid mRNA stability 99.4 3.1E-10 6.8E-15 106.8 23.8 334 89-456 22-391 (1088)
70 KOG3785 Uncharacterized conser 99.4 8.8E-08 1.9E-12 81.3 35.8 392 32-451 29-467 (557)
71 KOG3785 Uncharacterized conser 99.3 1.2E-07 2.7E-12 80.5 34.9 393 28-448 58-498 (557)
72 PF13041 PPR_2: PPR repeat fam 99.3 7.3E-12 1.6E-16 77.3 6.4 49 372-420 1-49 (50)
73 PF13041 PPR_2: PPR repeat fam 99.3 9.2E-12 2E-16 76.9 6.7 49 160-208 1-49 (50)
74 KOG4162 Predicted calmodulin-b 99.3 8.9E-08 1.9E-12 89.5 34.9 440 29-477 288-789 (799)
75 KOG1840 Kinesin light chain [C 99.3 1.5E-08 3.3E-13 93.5 28.4 97 127-223 199-309 (508)
76 KOG2376 Signal recognition par 99.3 3E-07 6.4E-12 83.5 35.4 393 21-435 42-517 (652)
77 COG3063 PilF Tfp pilus assembl 99.3 1.7E-08 3.7E-13 80.5 23.9 197 237-437 38-235 (250)
78 PRK11189 lipoprotein NlpI; Pro 99.2 1.1E-08 2.5E-13 90.4 24.8 95 95-191 67-161 (296)
79 KOG2047 mRNA splicing factor [ 99.2 2.1E-06 4.6E-11 78.9 39.8 326 65-403 106-506 (835)
80 KOG1840 Kinesin light chain [C 99.2 2.9E-09 6.2E-14 98.2 20.8 239 58-296 196-477 (508)
81 KOG0624 dsRNA-activated protei 99.2 4.3E-08 9.2E-13 82.8 25.1 301 60-369 37-371 (504)
82 COG3063 PilF Tfp pilus assembl 99.2 8E-08 1.7E-12 76.8 25.1 198 130-332 38-235 (250)
83 KOG4162 Predicted calmodulin-b 99.2 2.3E-06 5E-11 80.4 38.2 397 33-438 331-783 (799)
84 KOG0548 Molecular co-chaperone 99.2 2.9E-07 6.3E-12 82.7 31.0 386 32-437 9-454 (539)
85 PRK11189 lipoprotein NlpI; Pro 99.2 1.3E-07 2.9E-12 83.6 29.0 218 106-334 40-266 (296)
86 KOG0624 dsRNA-activated protei 99.2 1.5E-06 3.2E-11 73.8 32.7 300 92-403 38-370 (504)
87 cd05804 StaR_like StaR_like; a 99.2 9.1E-07 2E-11 81.5 34.5 304 129-438 8-336 (355)
88 KOG1174 Anaphase-promoting com 99.1 3.5E-07 7.6E-12 79.4 28.3 271 89-369 229-501 (564)
89 cd05804 StaR_like StaR_like; a 99.1 4.8E-07 1E-11 83.3 32.1 154 102-261 53-213 (355)
90 PRK04841 transcriptional regul 99.1 3.9E-06 8.4E-11 87.6 40.9 369 71-439 351-761 (903)
91 PF04733 Coatomer_E: Coatomer 99.1 8.7E-09 1.9E-13 89.7 17.4 256 28-298 4-265 (290)
92 KOG4340 Uncharacterized conser 99.1 2.8E-06 6E-11 70.8 28.8 190 29-227 14-208 (459)
93 KOG0548 Molecular co-chaperone 99.0 2.3E-06 5E-11 77.1 30.4 384 69-477 10-461 (539)
94 PF04733 Coatomer_E: Coatomer 99.0 4.5E-08 9.7E-13 85.3 19.4 249 172-438 11-265 (290)
95 KOG3617 WD40 and TPR repeat-co 99.0 8.1E-06 1.8E-10 77.4 32.8 165 35-224 810-994 (1416)
96 KOG4340 Uncharacterized conser 99.0 2.3E-06 5E-11 71.2 26.1 84 175-264 125-208 (459)
97 PRK04841 transcriptional regul 99.0 1.1E-05 2.3E-10 84.4 37.5 368 33-403 349-760 (903)
98 KOG1125 TPR repeat-containing 98.9 1.7E-07 3.6E-12 85.0 18.2 220 206-437 294-526 (579)
99 KOG3617 WD40 and TPR repeat-co 98.9 5E-05 1.1E-09 72.3 32.9 137 33-188 833-993 (1416)
100 KOG1128 Uncharacterized conser 98.8 2.5E-06 5.5E-11 79.7 24.0 238 194-454 395-633 (777)
101 PLN02789 farnesyltranstransfer 98.8 7.6E-06 1.6E-10 72.5 26.2 122 207-334 47-172 (320)
102 KOG3616 Selective LIM binding 98.8 2.7E-05 5.9E-10 73.1 30.1 171 240-435 738-908 (1636)
103 KOG1070 rRNA processing protei 98.8 5E-06 1.1E-10 83.2 26.4 233 195-431 1456-1693(1710)
104 KOG0985 Vesicle coat protein c 98.8 0.00011 2.5E-09 71.5 33.9 185 102-326 1058-1242(1666)
105 KOG1914 mRNA cleavage and poly 98.8 0.00011 2.4E-09 66.7 40.2 152 320-473 347-503 (656)
106 KOG3616 Selective LIM binding 98.8 5.4E-05 1.2E-09 71.2 30.3 297 22-363 612-932 (1636)
107 PLN02789 farnesyltranstransfer 98.8 3.4E-05 7.4E-10 68.4 27.4 211 98-316 43-267 (320)
108 KOG1125 TPR repeat-containing 98.8 3.9E-06 8.4E-11 76.4 21.4 222 137-365 295-524 (579)
109 KOG3081 Vesicle coat complex C 98.7 5.7E-05 1.2E-09 62.2 25.6 256 27-298 10-271 (299)
110 KOG1127 TPR repeat-containing 98.7 0.0001 2.2E-09 71.8 30.9 182 38-225 471-658 (1238)
111 COG5010 TadD Flp pilus assembl 98.7 6.9E-06 1.5E-10 67.5 19.6 161 58-222 64-227 (257)
112 PF12854 PPR_1: PPR repeat 98.7 2.8E-08 6E-13 54.8 4.0 32 157-188 2-33 (34)
113 TIGR03302 OM_YfiO outer membra 98.7 3.7E-06 8E-11 72.2 19.3 187 89-298 30-232 (235)
114 KOG1070 rRNA processing protei 98.7 3E-05 6.6E-10 77.8 27.2 205 162-372 1458-1667(1710)
115 PRK10370 formate-dependent nit 98.7 1.3E-05 2.8E-10 66.0 21.0 119 317-438 52-173 (198)
116 COG4783 Putative Zn-dependent 98.7 6.8E-05 1.5E-09 67.3 26.4 162 274-456 311-474 (484)
117 KOG1128 Uncharacterized conser 98.7 3E-06 6.5E-11 79.2 18.6 238 125-385 396-634 (777)
118 KOG1914 mRNA cleavage and poly 98.7 0.00029 6.2E-09 64.1 39.5 409 25-438 16-501 (656)
119 TIGR03302 OM_YfiO outer membra 98.7 8.1E-06 1.8E-10 70.1 20.3 183 125-333 31-232 (235)
120 PRK10370 formate-dependent nit 98.6 1.6E-05 3.5E-10 65.4 20.8 118 248-368 53-173 (198)
121 COG5010 TadD Flp pilus assembl 98.6 1.4E-05 3.1E-10 65.7 19.9 157 273-433 70-226 (257)
122 PF12854 PPR_1: PPR repeat 98.6 4.8E-08 1E-12 53.9 4.0 32 404-435 2-33 (34)
123 KOG0985 Vesicle coat protein c 98.6 0.00067 1.4E-08 66.5 37.0 201 196-433 1103-1303(1666)
124 KOG3081 Vesicle coat complex C 98.6 4.8E-05 1.1E-09 62.6 22.2 249 170-437 16-270 (299)
125 PRK14720 transcript cleavage f 98.6 4.5E-05 9.7E-10 75.6 25.7 144 29-191 35-178 (906)
126 PRK15359 type III secretion sy 98.6 5.4E-06 1.2E-10 64.5 15.5 95 95-191 27-121 (144)
127 KOG1127 TPR repeat-containing 98.6 0.00034 7.4E-09 68.3 29.4 127 27-155 528-658 (1238)
128 PRK15359 type III secretion sy 98.5 1.2E-05 2.6E-10 62.5 16.6 90 346-437 31-120 (144)
129 PRK15179 Vi polysaccharide bio 98.5 0.0001 2.3E-09 72.3 25.9 182 231-422 83-268 (694)
130 KOG2053 Mitochondrial inherita 98.5 0.0015 3.3E-08 63.3 43.0 205 19-226 37-255 (932)
131 PRK14720 transcript cleavage f 98.5 0.00026 5.6E-09 70.4 27.3 150 89-262 28-177 (906)
132 TIGR02552 LcrH_SycD type III s 98.5 1.1E-05 2.3E-10 62.5 14.5 105 339-447 17-121 (135)
133 PRK15179 Vi polysaccharide bio 98.5 4.1E-05 8.9E-10 75.0 21.0 182 192-386 81-267 (694)
134 COG4783 Putative Zn-dependent 98.4 0.00038 8.2E-09 62.7 24.8 141 204-368 313-454 (484)
135 KOG3060 Uncharacterized conser 98.4 0.00033 7.1E-09 57.5 21.6 186 176-368 26-220 (289)
136 TIGR02552 LcrH_SycD type III s 98.4 2.1E-05 4.5E-10 60.9 14.8 96 305-402 18-113 (135)
137 KOG3060 Uncharacterized conser 98.4 0.00062 1.4E-08 55.9 22.3 152 107-263 27-183 (289)
138 PF09976 TPR_21: Tetratricopep 98.2 0.0002 4.2E-09 56.0 15.6 126 307-435 15-144 (145)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 6.2E-05 1.3E-09 68.2 14.1 129 91-225 168-296 (395)
140 PF09976 TPR_21: Tetratricopep 98.2 0.00027 5.8E-09 55.2 15.9 115 105-222 24-143 (145)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.8E-09 66.1 15.7 120 240-365 175-294 (395)
142 TIGR00756 PPR pentatricopeptid 98.1 6.6E-06 1.4E-10 46.1 4.5 33 164-196 2-34 (35)
143 TIGR00756 PPR pentatricopeptid 98.1 6.1E-06 1.3E-10 46.3 4.2 33 376-408 2-34 (35)
144 PF13812 PPR_3: Pentatricopept 98.1 7E-06 1.5E-10 45.7 4.2 32 164-195 3-34 (34)
145 PF10037 MRP-S27: Mitochondria 98.1 9.6E-05 2.1E-09 67.3 13.0 120 336-455 63-184 (429)
146 PF13812 PPR_3: Pentatricopept 98.0 1.1E-05 2.5E-10 44.8 4.4 32 411-442 3-34 (34)
147 PF08579 RPM2: Mitochondrial r 98.0 0.00013 2.8E-09 51.7 10.3 76 98-173 31-115 (120)
148 PF10037 MRP-S27: Mitochondria 98.0 0.00028 6.1E-09 64.3 14.5 120 159-280 63-184 (429)
149 PF08579 RPM2: Mitochondrial r 98.0 0.00018 3.9E-09 51.0 9.9 80 130-209 28-116 (120)
150 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00058 1.3E-08 51.3 13.9 21 168-188 45-65 (119)
151 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00067 1.5E-08 50.9 13.8 100 93-192 3-106 (119)
152 PLN03088 SGT1, suppressor of 97.9 0.00051 1.1E-08 62.6 14.8 102 348-453 11-112 (356)
153 cd00189 TPR Tetratricopeptide 97.9 0.00027 5.8E-09 50.5 10.9 92 344-437 5-96 (100)
154 KOG2053 Mitochondrial inherita 97.9 0.031 6.7E-07 54.7 42.9 229 30-264 14-256 (932)
155 cd00189 TPR Tetratricopeptide 97.9 0.00044 9.6E-09 49.3 11.8 91 97-189 5-95 (100)
156 KOG0553 TPR repeat-containing 97.9 0.00023 4.9E-09 60.1 10.9 99 314-416 91-189 (304)
157 KOG0553 TPR repeat-containing 97.9 0.00029 6.3E-09 59.4 11.4 100 33-136 89-191 (304)
158 PLN03088 SGT1, suppressor of 97.8 0.00077 1.7E-08 61.4 14.6 88 313-402 11-98 (356)
159 PRK02603 photosystem I assembl 97.8 0.00051 1.1E-08 55.5 11.8 84 341-425 37-122 (172)
160 PRK15363 pathogenicity island 97.8 0.0026 5.6E-08 49.0 14.5 97 340-438 36-132 (157)
161 PF14559 TPR_19: Tetratricopep 97.8 0.0001 2.2E-09 48.9 6.2 62 35-98 1-64 (68)
162 PRK15363 pathogenicity island 97.8 0.0017 3.6E-08 50.0 13.1 92 97-190 40-131 (157)
163 PF12895 Apc3: Anaphase-promot 97.7 8.6E-05 1.9E-09 51.7 5.7 78 353-433 3-82 (84)
164 PF12895 Apc3: Anaphase-promot 97.7 0.00022 4.8E-09 49.6 7.5 80 38-117 2-83 (84)
165 PF01535 PPR: PPR repeat; Int 97.7 5E-05 1.1E-09 41.1 3.3 26 377-402 3-28 (31)
166 PF05843 Suf: Suppressor of fo 97.7 0.0011 2.4E-08 58.1 13.4 130 270-402 2-135 (280)
167 PF01535 PPR: PPR repeat; Int 97.7 5.9E-05 1.3E-09 40.7 3.6 29 164-192 2-30 (31)
168 KOG0550 Molecular chaperone (D 97.7 0.014 3.1E-07 51.8 19.2 320 102-449 59-396 (486)
169 PRK10866 outer membrane biogen 97.7 0.012 2.6E-07 50.3 19.0 53 346-398 182-236 (243)
170 PF05843 Suf: Suppressor of fo 97.7 0.0014 3.1E-08 57.4 13.5 131 235-368 2-136 (280)
171 PF14938 SNAP: Soluble NSF att 97.6 0.018 3.9E-07 50.8 20.2 25 273-297 159-183 (282)
172 PF14938 SNAP: Soluble NSF att 97.6 0.0041 8.8E-08 54.9 16.1 135 341-478 116-267 (282)
173 PRK10153 DNA-binding transcrip 97.6 0.0026 5.5E-08 60.7 15.5 73 124-200 417-489 (517)
174 KOG2041 WD40 repeat protein [G 97.6 0.073 1.6E-06 50.7 24.7 319 74-437 747-1085(1189)
175 PRK10153 DNA-binding transcrip 97.6 0.0099 2.1E-07 56.8 18.8 136 300-438 333-482 (517)
176 PRK10866 outer membrane biogen 97.6 0.03 6.6E-07 47.9 20.0 176 241-436 39-239 (243)
177 PRK02603 photosystem I assembl 97.6 0.0061 1.3E-07 49.2 15.3 85 271-356 37-123 (172)
178 KOG2796 Uncharacterized conser 97.6 0.033 7.2E-07 46.4 22.8 131 271-402 179-314 (366)
179 PF06239 ECSIT: Evolutionarily 97.6 0.0013 2.7E-08 53.2 10.6 88 125-212 45-153 (228)
180 CHL00033 ycf3 photosystem I as 97.6 0.0023 4.9E-08 51.5 12.3 26 341-366 74-99 (168)
181 PF06239 ECSIT: Evolutionarily 97.5 0.004 8.6E-08 50.4 13.0 88 336-423 44-152 (228)
182 PF14559 TPR_19: Tetratricopep 97.5 0.00047 1E-08 45.6 6.7 52 104-156 3-54 (68)
183 CHL00033 ycf3 photosystem I as 97.5 0.0032 6.9E-08 50.7 12.7 81 269-350 35-117 (168)
184 PF12688 TPR_5: Tetratrico pep 97.5 0.011 2.5E-07 43.7 13.9 89 346-436 8-102 (120)
185 PF12688 TPR_5: Tetratrico pep 97.4 0.012 2.6E-07 43.6 13.1 93 169-261 8-102 (120)
186 COG4235 Cytochrome c biogenesi 97.4 0.016 3.5E-07 49.5 15.3 113 336-452 153-268 (287)
187 COG4235 Cytochrome c biogenesi 97.4 0.016 3.4E-07 49.5 15.2 127 285-416 138-267 (287)
188 KOG0550 Molecular chaperone (D 97.3 0.11 2.3E-06 46.5 23.0 258 33-298 57-350 (486)
189 PF13432 TPR_16: Tetratricopep 97.3 0.00088 1.9E-08 43.8 6.1 55 32-88 4-58 (65)
190 KOG2041 WD40 repeat protein [G 97.3 0.17 3.6E-06 48.5 32.0 367 32-451 670-1064(1189)
191 PF13525 YfiO: Outer membrane 97.3 0.036 7.9E-07 46.1 16.7 21 241-261 49-69 (203)
192 COG4700 Uncharacterized protei 97.3 0.058 1.3E-06 42.5 19.7 133 159-294 86-218 (251)
193 PF13432 TPR_16: Tetratricopep 97.3 0.0017 3.8E-08 42.4 6.8 56 100-156 5-60 (65)
194 KOG1538 Uncharacterized conser 97.2 0.0091 2E-07 56.0 13.3 244 128-402 557-845 (1081)
195 KOG1920 IkappaB kinase complex 97.2 0.25 5.4E-06 50.4 23.7 109 307-435 942-1052(1265)
196 PF13414 TPR_11: TPR repeat; P 97.2 0.0015 3.2E-08 43.4 6.3 60 376-436 5-65 (69)
197 KOG2796 Uncharacterized conser 97.2 0.11 2.3E-06 43.5 21.7 142 305-449 178-324 (366)
198 PF13414 TPR_11: TPR repeat; P 97.2 0.0031 6.7E-08 41.8 7.4 61 93-154 4-65 (69)
199 PF13525 YfiO: Outer membrane 97.1 0.12 2.7E-06 42.9 18.1 179 241-429 12-198 (203)
200 PRK10803 tol-pal system protei 97.1 0.017 3.7E-07 49.8 13.0 95 130-226 146-246 (263)
201 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.26 5.6E-06 44.7 35.9 132 341-475 399-535 (660)
202 PF03704 BTAD: Bacterial trans 97.0 0.05 1.1E-06 42.5 13.9 72 376-448 64-140 (146)
203 PF13371 TPR_9: Tetratricopept 96.9 0.0093 2E-07 40.0 8.0 56 100-156 3-58 (73)
204 PRK10803 tol-pal system protei 96.9 0.023 5E-07 49.0 12.1 97 165-263 146-246 (263)
205 PF13371 TPR_9: Tetratricopept 96.9 0.0078 1.7E-07 40.3 7.3 52 349-401 5-56 (73)
206 COG4700 Uncharacterized protei 96.8 0.17 3.6E-06 40.0 18.2 127 266-394 86-213 (251)
207 PF03704 BTAD: Bacterial trans 96.8 0.012 2.6E-07 46.0 9.2 70 94-164 64-138 (146)
208 KOG1130 Predicted G-alpha GTPa 96.8 0.025 5.4E-07 50.3 11.6 273 93-366 16-342 (639)
209 PF12921 ATP13: Mitochondrial 96.8 0.033 7.1E-07 41.8 10.7 98 338-455 1-99 (126)
210 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.028 6.2E-07 51.3 12.1 70 18-89 68-140 (453)
211 COG3898 Uncharacterized membra 96.7 0.39 8.5E-06 42.8 31.4 286 140-443 97-397 (531)
212 KOG1538 Uncharacterized conser 96.7 0.35 7.5E-06 46.0 18.2 42 43-88 618-659 (1081)
213 KOG1130 Predicted G-alpha GTPa 96.6 0.031 6.7E-07 49.7 10.9 265 135-401 25-342 (639)
214 PF04840 Vps16_C: Vps16, C-ter 96.6 0.47 1E-05 42.4 29.9 107 272-398 180-286 (319)
215 COG3898 Uncharacterized membra 96.6 0.5 1.1E-05 42.2 30.9 280 72-368 95-392 (531)
216 COG3118 Thioredoxin domain-con 96.6 0.25 5.3E-06 42.4 15.4 145 29-177 138-287 (304)
217 COG3118 Thioredoxin domain-con 96.6 0.42 9.1E-06 41.1 17.2 51 138-189 145-195 (304)
218 KOG2114 Vacuolar assembly/sort 96.5 0.87 1.9E-05 44.9 20.3 117 31-153 340-457 (933)
219 PRK15331 chaperone protein Sic 96.5 0.28 6.2E-06 38.2 14.4 85 316-402 49-133 (165)
220 PF12921 ATP13: Mitochondrial 96.4 0.048 1E-06 40.9 9.6 48 194-242 49-96 (126)
221 PRK15331 chaperone protein Sic 96.4 0.17 3.6E-06 39.5 12.5 92 345-438 43-134 (165)
222 PF04840 Vps16_C: Vps16, C-ter 96.3 0.75 1.6E-05 41.1 27.4 106 307-432 180-285 (319)
223 PF13281 DUF4071: Domain of un 96.3 0.83 1.8E-05 41.4 20.3 72 101-172 150-227 (374)
224 PF04053 Coatomer_WDAD: Coatom 96.3 0.39 8.4E-06 45.1 16.5 168 25-223 261-428 (443)
225 KOG2280 Vacuolar assembly/sort 96.2 1.3 2.8E-05 43.2 25.2 77 313-399 693-769 (829)
226 COG5107 RNA14 Pre-mRNA 3'-end 96.2 0.94 2E-05 41.3 33.9 129 305-437 398-530 (660)
227 PF13424 TPR_12: Tetratricopep 96.2 0.012 2.7E-07 40.0 5.1 63 375-437 6-74 (78)
228 PF04053 Coatomer_WDAD: Coatom 96.2 0.29 6.3E-06 45.9 15.3 159 67-260 267-428 (443)
229 KOG0543 FKBP-type peptidyl-pro 96.2 0.18 3.8E-06 45.2 12.8 96 375-473 258-357 (397)
230 KOG0543 FKBP-type peptidyl-pro 96.1 0.12 2.5E-06 46.3 11.7 138 33-191 216-355 (397)
231 PF07079 DUF1347: Protein of u 96.1 1.1 2.4E-05 41.0 40.2 122 320-449 396-530 (549)
232 KOG2280 Vacuolar assembly/sort 96.1 1.6 3.4E-05 42.6 34.1 320 102-436 399-771 (829)
233 KOG3941 Intermediate in Toll s 96.0 0.077 1.7E-06 44.8 9.5 113 81-212 54-173 (406)
234 PF13424 TPR_12: Tetratricopep 96.0 0.028 6E-07 38.2 6.0 62 340-401 6-73 (78)
235 PRK11906 transcriptional regul 96.0 0.76 1.6E-05 42.5 16.4 79 322-402 322-400 (458)
236 COG4105 ComL DNA uptake lipopr 96.0 0.84 1.8E-05 38.5 20.1 54 346-400 174-230 (254)
237 PF09205 DUF1955: Domain of un 95.9 0.46 1E-05 35.3 13.1 57 347-404 94-150 (161)
238 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.33 7.3E-06 44.6 13.8 65 303-368 74-141 (453)
239 PF10300 DUF3808: Protein of u 95.9 1.1 2.5E-05 42.7 18.2 163 236-401 190-374 (468)
240 COG4649 Uncharacterized protei 95.9 0.65 1.4E-05 36.4 14.8 130 27-156 60-196 (221)
241 PF13281 DUF4071: Domain of un 95.6 1.7 3.8E-05 39.4 21.7 28 411-438 307-334 (374)
242 PF10300 DUF3808: Protein of u 95.5 0.28 6E-06 46.7 12.4 48 38-87 246-293 (468)
243 COG1729 Uncharacterized protei 95.4 0.34 7.4E-06 41.1 11.1 98 200-298 145-244 (262)
244 KOG3941 Intermediate in Toll s 95.4 0.23 5E-06 42.1 9.8 90 231-320 64-174 (406)
245 PF09205 DUF1955: Domain of un 95.3 0.83 1.8E-05 34.0 12.8 68 373-441 85-152 (161)
246 KOG1941 Acetylcholine receptor 95.3 1.7 3.7E-05 38.6 15.1 126 240-365 128-272 (518)
247 PF04184 ST7: ST7 protein; In 95.3 1.9 4.2E-05 40.1 16.2 77 128-204 260-338 (539)
248 KOG1258 mRNA processing protei 95.3 2.8 6.1E-05 39.9 30.0 385 26-423 42-489 (577)
249 PF09613 HrpB1_HrpK: Bacterial 95.2 0.83 1.8E-05 35.6 11.8 51 36-88 21-71 (160)
250 PF04184 ST7: ST7 protein; In 95.2 2.7 5.8E-05 39.2 17.7 59 343-401 263-322 (539)
251 KOG4555 TPR repeat-containing 95.1 0.72 1.6E-05 34.2 10.5 91 101-192 52-145 (175)
252 COG4785 NlpI Lipoprotein NlpI, 95.1 1.5 3.3E-05 35.9 17.1 182 245-439 76-267 (297)
253 KOG2610 Uncharacterized conser 95.1 1 2.3E-05 39.3 13.1 154 245-401 114-274 (491)
254 COG1729 Uncharacterized protei 94.9 0.55 1.2E-05 39.9 10.9 97 129-226 144-244 (262)
255 PF08631 SPO22: Meiosis protei 94.8 2.6 5.7E-05 37.1 24.7 62 199-263 86-150 (278)
256 PF07079 DUF1347: Protein of u 94.8 3.3 7.1E-05 38.1 42.6 421 36-468 17-521 (549)
257 PRK11906 transcriptional regul 94.8 3.4 7.5E-05 38.4 17.5 145 250-399 274-432 (458)
258 smart00299 CLH Clathrin heavy 94.7 1.5 3.2E-05 33.9 16.3 83 133-223 13-95 (140)
259 KOG2610 Uncharacterized conser 94.7 1.3 2.8E-05 38.8 12.8 155 208-366 114-274 (491)
260 smart00299 CLH Clathrin heavy 94.6 1.6 3.5E-05 33.7 15.6 85 238-330 11-95 (140)
261 PF13428 TPR_14: Tetratricopep 94.5 0.16 3.4E-06 29.8 5.1 23 380-402 7-29 (44)
262 COG3629 DnrI DNA-binding trans 94.4 0.71 1.5E-05 39.9 10.7 77 129-206 155-236 (280)
263 COG4785 NlpI Lipoprotein NlpI, 94.4 2.4 5.2E-05 34.8 13.7 187 68-264 72-267 (297)
264 COG3629 DnrI DNA-binding trans 94.4 0.67 1.4E-05 40.1 10.5 78 340-418 154-236 (280)
265 KOG1258 mRNA processing protei 94.3 5.1 0.00011 38.3 34.6 367 76-455 60-486 (577)
266 PF13428 TPR_14: Tetratricopep 94.3 0.15 3.3E-06 29.9 4.8 27 95-121 4-30 (44)
267 KOG4555 TPR repeat-containing 94.2 1.4 2.9E-05 32.8 10.1 90 349-439 53-145 (175)
268 KOG1920 IkappaB kinase complex 94.2 7 0.00015 40.7 18.2 114 159-294 932-1051(1265)
269 PF10602 RPN7: 26S proteasome 93.9 1.8 3.8E-05 35.0 11.7 61 129-189 38-100 (177)
270 KOG1585 Protein required for f 93.7 3.7 8E-05 34.4 16.6 205 199-432 33-250 (308)
271 PF13512 TPR_18: Tetratricopep 93.6 2.6 5.6E-05 32.2 11.1 23 240-262 53-75 (142)
272 TIGR02561 HrpB1_HrpK type III 93.5 1.5 3.3E-05 33.6 9.7 52 36-89 21-72 (153)
273 PF13512 TPR_18: Tetratricopep 93.4 2.7 5.9E-05 32.1 11.9 55 315-369 21-77 (142)
274 KOG1941 Acetylcholine receptor 93.4 3.8 8.2E-05 36.5 13.1 126 310-435 128-272 (518)
275 PRK15180 Vi polysaccharide bio 93.3 6.9 0.00015 36.4 28.5 131 24-157 288-421 (831)
276 KOG0276 Vesicle coat complex C 92.9 1.2 2.6E-05 42.3 10.1 157 30-223 591-747 (794)
277 PF10602 RPN7: 26S proteasome 92.9 1.9 4.2E-05 34.8 10.3 61 341-401 38-100 (177)
278 PF02284 COX5A: Cytochrome c o 92.7 2.6 5.6E-05 29.8 9.6 61 392-454 28-89 (108)
279 COG0457 NrfG FOG: TPR repeat [ 92.6 5.5 0.00012 33.5 29.3 199 236-438 61-265 (291)
280 PF13176 TPR_7: Tetratricopept 92.5 0.34 7.4E-06 26.8 4.0 26 411-436 1-26 (36)
281 KOG1585 Protein required for f 92.4 5.9 0.00013 33.3 16.8 54 307-361 193-249 (308)
282 PF13170 DUF4003: Protein of u 92.4 7.5 0.00016 34.5 21.7 132 178-311 78-224 (297)
283 KOG1550 Extracellular protein 92.3 12 0.00027 36.7 19.2 50 319-369 308-358 (552)
284 KOG4648 Uncharacterized conser 92.2 1.1 2.4E-05 39.3 8.3 90 33-126 105-197 (536)
285 PF08631 SPO22: Meiosis protei 92.1 8 0.00017 34.1 26.8 162 103-269 4-192 (278)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 92.0 1.6 3.4E-05 30.5 7.2 63 391-454 24-86 (103)
287 PF13170 DUF4003: Protein of u 92.0 8.5 0.00018 34.1 20.8 131 287-419 80-227 (297)
288 PF09613 HrpB1_HrpK: Bacterial 91.8 5.2 0.00011 31.3 13.5 91 350-444 21-112 (160)
289 COG4649 Uncharacterized protei 91.6 5.7 0.00012 31.4 15.7 131 315-445 69-203 (221)
290 KOG1586 Protein required for f 91.6 7.3 0.00016 32.5 19.5 18 351-368 166-183 (288)
291 COG2976 Uncharacterized protei 91.5 5.9 0.00013 32.1 11.1 118 37-157 65-189 (207)
292 PF13176 TPR_7: Tetratricopept 91.4 0.58 1.2E-05 25.9 4.1 23 165-187 2-24 (36)
293 PF07035 Mic1: Colon cancer-as 91.3 6.2 0.00013 31.3 16.2 28 188-215 20-47 (167)
294 COG4105 ComL DNA uptake lipopr 91.3 8.5 0.00018 32.7 21.3 172 173-366 45-231 (254)
295 PF07575 Nucleopor_Nup85: Nup8 91.2 17 0.00036 36.0 19.4 150 289-453 390-539 (566)
296 COG2909 MalT ATP-dependent tra 90.8 20 0.00044 36.3 26.4 227 136-364 424-684 (894)
297 KOG0276 Vesicle coat complex C 90.8 5 0.00011 38.4 11.6 43 174-222 649-691 (794)
298 PRK09687 putative lyase; Provi 90.7 11 0.00024 33.2 29.2 235 88-349 33-277 (280)
299 PF13431 TPR_17: Tetratricopep 90.6 0.32 7E-06 26.5 2.5 16 411-426 15-30 (34)
300 PF00515 TPR_1: Tetratricopept 90.6 0.73 1.6E-05 24.9 4.0 27 411-437 3-29 (34)
301 KOG2114 Vacuolar assembly/sort 90.4 21 0.00046 35.9 21.2 138 33-188 376-516 (933)
302 KOG4234 TPR repeat-containing 90.4 6.6 0.00014 31.9 10.4 56 100-156 142-197 (271)
303 PF07035 Mic1: Colon cancer-as 90.4 7.7 0.00017 30.8 16.3 134 113-262 15-148 (167)
304 KOG4570 Uncharacterized conser 90.3 6.2 0.00013 34.5 10.9 47 354-400 115-161 (418)
305 KOG4570 Uncharacterized conser 90.3 5.8 0.00013 34.6 10.7 48 249-296 115-162 (418)
306 PF02284 COX5A: Cytochrome c o 89.6 5.8 0.00012 28.1 8.7 46 357-402 28-73 (108)
307 KOG1464 COP9 signalosome, subu 89.6 12 0.00027 31.9 15.9 181 37-218 39-252 (440)
308 PF07719 TPR_2: Tetratricopept 89.2 1.1 2.3E-05 24.1 4.0 26 412-437 4-29 (34)
309 COG4455 ImpE Protein of avirul 88.8 2.1 4.6E-05 35.1 6.7 71 29-101 5-81 (273)
310 PF13431 TPR_17: Tetratricopep 88.7 0.39 8.6E-06 26.2 2.0 21 91-111 12-32 (34)
311 PF06552 TOM20_plant: Plant sp 88.6 5.2 0.00011 31.9 8.6 17 440-456 109-125 (186)
312 COG0457 NrfG FOG: TPR repeat [ 88.5 13 0.00029 31.0 30.2 64 162-225 59-123 (291)
313 COG1747 Uncharacterized N-term 88.3 23 0.00051 33.5 23.8 161 271-438 68-234 (711)
314 PF00515 TPR_1: Tetratricopept 88.0 1.9 4.1E-05 23.2 4.5 23 132-154 6-28 (34)
315 PF02259 FAT: FAT domain; Int 87.4 23 0.0005 32.4 22.5 63 235-297 147-212 (352)
316 PRK15180 Vi polysaccharide bio 87.2 26 0.00057 32.8 13.4 90 278-369 332-421 (831)
317 PF02259 FAT: FAT domain; Int 87.1 24 0.00051 32.3 24.4 64 269-332 146-212 (352)
318 TIGR02508 type_III_yscG type I 86.8 8.9 0.00019 27.1 10.4 86 40-130 20-105 (115)
319 KOG2066 Vacuolar assembly/sort 86.8 36 0.00079 34.1 26.9 154 30-189 361-532 (846)
320 PF07719 TPR_2: Tetratricopept 86.5 2.5 5.5E-05 22.6 4.5 19 135-153 9-27 (34)
321 PF11207 DUF2989: Protein of u 86.4 8.1 0.00017 31.6 8.7 42 247-288 153-197 (203)
322 COG1747 Uncharacterized N-term 86.4 30 0.00066 32.8 24.4 182 90-280 64-250 (711)
323 COG4455 ImpE Protein of avirul 86.0 7 0.00015 32.2 8.1 77 341-418 3-81 (273)
324 PF13374 TPR_10: Tetratricopep 85.9 2.3 5E-05 24.1 4.4 28 410-437 3-30 (42)
325 TIGR02561 HrpB1_HrpK type III 85.7 15 0.00031 28.4 11.3 52 103-156 21-73 (153)
326 KOG4234 TPR repeat-containing 85.6 16 0.00034 29.8 9.8 93 314-409 105-201 (271)
327 TIGR03504 FimV_Cterm FimV C-te 85.6 2.5 5.3E-05 24.7 4.1 23 415-437 5-27 (44)
328 PF00637 Clathrin: Region in C 85.6 0.38 8.2E-06 37.3 1.0 84 310-400 13-96 (143)
329 PF13929 mRNA_stabil: mRNA sta 85.4 24 0.00053 30.8 18.7 116 302-417 162-286 (292)
330 TIGR03504 FimV_Cterm FimV C-te 85.4 2 4.4E-05 25.1 3.7 28 28-55 2-29 (44)
331 PF13374 TPR_10: Tetratricopep 85.0 2.8 6.1E-05 23.7 4.4 26 164-189 4-29 (42)
332 COG3947 Response regulator con 84.9 25 0.00055 30.6 16.5 72 375-447 280-356 (361)
333 PF07163 Pex26: Pex26 protein; 84.6 18 0.00039 31.3 10.2 87 99-185 90-181 (309)
334 PF11207 DUF2989: Protein of u 84.6 21 0.00045 29.3 15.1 72 144-216 123-197 (203)
335 PF07163 Pex26: Pex26 protein; 84.4 17 0.00037 31.4 10.0 87 241-327 90-181 (309)
336 KOG1550 Extracellular protein 84.1 46 0.001 32.9 26.2 181 108-300 228-428 (552)
337 PF13174 TPR_6: Tetratricopept 83.2 2.4 5.2E-05 22.4 3.4 21 135-155 8-28 (33)
338 cd00923 Cyt_c_Oxidase_Va Cytoc 82.6 14 0.00031 25.9 9.7 45 287-331 25-69 (103)
339 PF13181 TPR_8: Tetratricopept 81.9 4.9 0.00011 21.5 4.3 27 411-437 3-29 (34)
340 PF14561 TPR_20: Tetratricopep 81.8 5.9 0.00013 27.7 5.6 36 20-55 17-52 (90)
341 PF00637 Clathrin: Region in C 81.6 0.61 1.3E-05 36.2 0.7 53 134-186 14-66 (143)
342 PF10579 Rapsyn_N: Rapsyn N-te 80.8 6.5 0.00014 26.4 5.1 47 386-432 18-66 (80)
343 COG2976 Uncharacterized protei 79.9 31 0.00068 28.1 13.3 92 205-298 97-188 (207)
344 PRK11619 lytic murein transgly 79.8 72 0.0016 32.2 39.2 23 29-51 37-59 (644)
345 KOG2471 TPR repeat-containing 79.5 55 0.0012 31.0 12.0 40 104-143 29-68 (696)
346 KOG4648 Uncharacterized conser 78.9 12 0.00026 33.2 7.5 94 276-373 104-197 (536)
347 PF10345 Cohesin_load: Cohesin 78.9 75 0.0016 31.9 38.1 181 42-223 38-251 (608)
348 PF14853 Fis1_TPR_C: Fis1 C-te 78.8 13 0.00027 22.9 6.2 38 414-453 6-43 (53)
349 PRK11619 lytic murein transgly 78.4 80 0.0017 31.9 36.5 182 247-434 254-464 (644)
350 PF07721 TPR_4: Tetratricopept 78.1 3.7 8.1E-05 20.6 2.7 19 414-432 6-24 (26)
351 PF06552 TOM20_plant: Plant sp 77.8 35 0.00076 27.5 11.8 75 109-192 52-137 (186)
352 TIGR02508 type_III_yscG type I 77.7 22 0.00049 25.2 8.5 15 138-152 50-64 (115)
353 PRK09687 putative lyase; Provi 77.6 50 0.0011 29.1 29.8 23 379-402 240-262 (280)
354 PF09477 Type_III_YscG: Bacter 77.5 24 0.00052 25.4 8.7 79 40-122 21-99 (116)
355 PF08311 Mad3_BUB1_I: Mad3/BUB 77.4 11 0.00025 28.3 6.3 43 43-85 81-123 (126)
356 PF13181 TPR_8: Tetratricopept 77.1 8.8 0.00019 20.4 4.4 26 130-155 4-29 (34)
357 KOG0890 Protein kinase of the 76.7 1.6E+02 0.0034 34.4 24.0 152 97-258 1388-1542(2382)
358 KOG0890 Protein kinase of the 76.1 1.6E+02 0.0035 34.3 26.3 148 66-221 1388-1542(2382)
359 COG5159 RPN6 26S proteasome re 69.6 77 0.0017 27.7 11.5 21 379-399 130-150 (421)
360 COG2909 MalT ATP-dependent tra 69.4 1.4E+02 0.0031 30.7 25.5 229 101-329 424-684 (894)
361 cd08819 CARD_MDA5_2 Caspase ac 69.2 35 0.00075 23.6 6.9 14 318-331 50-63 (88)
362 KOG4077 Cytochrome c oxidase, 69.1 46 0.00099 24.9 10.0 61 392-453 67-127 (149)
363 COG3947 Response regulator con 68.8 82 0.0018 27.7 16.2 86 99-186 94-190 (361)
364 KOG2066 Vacuolar assembly/sort 68.7 1.4E+02 0.003 30.3 23.8 96 72-174 367-467 (846)
365 PF11848 DUF3368: Domain of un 68.6 22 0.00049 21.2 4.9 33 420-452 13-45 (48)
366 PF13929 mRNA_stabil: mRNA sta 68.5 83 0.0018 27.6 22.0 63 231-293 199-262 (292)
367 KOG2034 Vacuolar sorting prote 68.1 1.5E+02 0.0033 30.5 28.4 78 27-115 360-438 (911)
368 PF13762 MNE1: Mitochondrial s 67.6 56 0.0012 25.3 10.6 82 129-210 41-128 (145)
369 PF04097 Nic96: Nup93/Nic96; 67.1 1.5E+02 0.0032 29.9 19.9 63 128-192 113-182 (613)
370 PF04910 Tcf25: Transcriptiona 66.8 1.1E+02 0.0023 28.3 17.6 97 58-154 37-166 (360)
371 KOG2063 Vacuolar assembly/sort 65.2 1.8E+02 0.004 30.4 25.5 56 31-88 313-373 (877)
372 PF13762 MNE1: Mitochondrial s 64.5 65 0.0014 25.0 10.5 82 341-422 41-128 (145)
373 PF08424 NRDE-2: NRDE-2, neces 63.8 1.1E+02 0.0025 27.6 17.7 59 146-206 50-108 (321)
374 PF09477 Type_III_YscG: Bacter 63.5 54 0.0012 23.7 8.9 32 159-192 68-99 (116)
375 smart00028 TPR Tetratricopepti 63.0 18 0.00038 18.0 3.7 15 137-151 11-25 (34)
376 PF14689 SPOB_a: Sensor_kinase 62.7 29 0.00064 22.1 4.9 25 130-154 26-50 (62)
377 PHA02875 ankyrin repeat protei 62.7 1.3E+02 0.0029 28.3 11.6 17 241-257 72-88 (413)
378 PF04097 Nic96: Nup93/Nic96; 62.6 1.8E+02 0.0038 29.4 17.2 87 312-403 266-356 (613)
379 PF10579 Rapsyn_N: Rapsyn N-te 62.4 30 0.00065 23.3 4.9 15 344-358 48-62 (80)
380 COG5159 RPN6 26S proteasome re 61.8 1.1E+02 0.0024 26.8 21.4 201 26-226 4-235 (421)
381 PF14689 SPOB_a: Sensor_kinase 61.2 28 0.00061 22.2 4.6 24 166-189 27-50 (62)
382 smart00777 Mad3_BUB1_I Mad3/BU 61.1 34 0.00074 25.7 5.7 25 92-116 99-123 (125)
383 KOG2297 Predicted translation 61.0 1.2E+02 0.0026 26.9 20.2 173 159-359 162-341 (412)
384 PF11846 DUF3366: Domain of un 60.8 53 0.0011 27.0 7.6 33 405-437 140-172 (193)
385 cd00280 TRFH Telomeric Repeat 60.7 85 0.0019 25.4 7.9 22 346-367 118-139 (200)
386 KOG4077 Cytochrome c oxidase, 60.6 69 0.0015 24.0 9.7 59 357-416 67-125 (149)
387 KOG1308 Hsp70-interacting prot 60.3 14 0.00031 32.8 4.1 92 351-445 126-218 (377)
388 PF09868 DUF2095: Uncharacteri 59.6 61 0.0013 23.6 6.3 31 133-164 67-97 (128)
389 COG0735 Fur Fe2+/Zn2+ uptake r 59.4 62 0.0013 25.1 7.1 60 293-353 10-69 (145)
390 COG5108 RPO41 Mitochondrial DN 59.3 2E+02 0.0042 28.8 12.7 74 309-385 33-114 (1117)
391 KOG4567 GTPase-activating prot 58.7 1.3E+02 0.0028 26.7 9.3 72 147-223 263-344 (370)
392 PF14853 Fis1_TPR_C: Fis1 C-te 58.4 39 0.00085 20.8 4.7 29 380-410 7-35 (53)
393 PF11848 DUF3368: Domain of un 58.2 38 0.00082 20.2 5.2 25 141-165 16-40 (48)
394 KOG2396 HAT (Half-A-TPR) repea 57.6 1.8E+02 0.0039 27.9 37.0 68 28-97 104-179 (568)
395 KOG1464 COP9 signalosome, subu 57.1 1.3E+02 0.0028 26.1 19.2 120 211-331 41-172 (440)
396 PF07575 Nucleopor_Nup85: Nup8 56.8 1.2E+02 0.0026 30.2 10.4 29 126-154 404-432 (566)
397 KOG0376 Serine-threonine phosp 56.7 24 0.00053 33.0 5.1 104 32-139 11-117 (476)
398 COG5187 RPN7 26S proteasome re 56.6 1.4E+02 0.003 26.3 12.3 98 338-437 114-220 (412)
399 PF08311 Mad3_BUB1_I: Mad3/BUB 55.4 88 0.0019 23.6 9.3 43 110-152 81-124 (126)
400 KOG3824 Huntingtin interacting 55.1 49 0.0011 29.1 6.3 50 37-88 128-177 (472)
401 cd08819 CARD_MDA5_2 Caspase ac 54.7 69 0.0015 22.2 7.3 66 253-324 21-86 (88)
402 COG0735 Fur Fe2+/Zn2+ uptake r 54.3 1E+02 0.0022 24.0 7.7 47 117-164 11-57 (145)
403 PRK10564 maltose regulon perip 54.2 40 0.00086 29.7 5.7 35 412-446 260-294 (303)
404 KOG4567 GTPase-activating prot 54.0 98 0.0021 27.4 7.9 57 324-385 263-319 (370)
405 KOG0686 COP9 signalosome, subu 54.0 1.9E+02 0.0041 26.9 15.8 63 128-190 151-215 (466)
406 PRK10564 maltose regulon perip 53.8 32 0.0007 30.2 5.2 35 165-199 260-294 (303)
407 KOG3807 Predicted membrane pro 53.4 1.7E+02 0.0037 26.3 13.6 23 133-155 281-303 (556)
408 COG5108 RPO41 Mitochondrial DN 52.7 1.3E+02 0.0029 29.8 9.3 90 167-261 33-130 (1117)
409 KOG1308 Hsp70-interacting prot 52.7 6.3 0.00014 34.9 0.8 90 73-164 126-219 (377)
410 PF05944 Phage_term_smal: Phag 52.5 72 0.0016 24.3 6.2 35 20-56 45-79 (132)
411 PRK10941 hypothetical protein; 51.8 1.7E+02 0.0036 25.7 10.4 72 380-452 187-259 (269)
412 PF11846 DUF3366: Domain of un 51.7 97 0.0021 25.4 7.7 30 337-366 142-171 (193)
413 PF08424 NRDE-2: NRDE-2, neces 51.6 1.9E+02 0.0041 26.2 17.1 78 321-400 48-128 (321)
414 PRK10941 hypothetical protein; 51.4 1.7E+02 0.0037 25.7 10.1 55 203-261 187-242 (269)
415 PF09454 Vps23_core: Vps23 cor 51.3 41 0.00088 21.8 4.1 49 125-174 6-54 (65)
416 KOG4642 Chaperone-dependent E3 50.9 1.6E+02 0.0034 25.2 11.1 118 278-399 19-142 (284)
417 PF04910 Tcf25: Transcriptiona 50.6 2.1E+02 0.0045 26.5 19.1 99 303-401 39-166 (360)
418 PF11663 Toxin_YhaV: Toxin wit 50.5 22 0.00047 26.9 3.1 30 105-136 108-137 (140)
419 KOG0376 Serine-threonine phosp 50.2 52 0.0011 31.0 6.1 99 350-454 15-115 (476)
420 PF13934 ELYS: Nuclear pore co 49.2 1.7E+02 0.0036 24.9 11.2 119 59-184 76-198 (226)
421 PF09986 DUF2225: Uncharacteri 48.9 1.6E+02 0.0035 24.7 11.7 65 379-443 123-199 (214)
422 KOG2659 LisH motif-containing 48.7 1.7E+02 0.0036 24.8 9.1 96 302-399 24-128 (228)
423 KOG0686 COP9 signalosome, subu 48.3 2.3E+02 0.0051 26.4 14.6 164 270-437 151-332 (466)
424 TIGR03362 VI_chp_7 type VI sec 48.1 2.1E+02 0.0045 25.7 13.3 47 27-75 101-147 (301)
425 KOG4642 Chaperone-dependent E3 48.1 1.8E+02 0.0038 24.9 10.3 116 314-433 20-141 (284)
426 KOG0687 26S proteasome regulat 47.9 2.1E+02 0.0046 25.7 15.5 149 299-451 65-223 (393)
427 PF09868 DUF2095: Uncharacteri 47.7 94 0.002 22.7 5.7 40 97-137 66-105 (128)
428 PF11663 Toxin_YhaV: Toxin wit 47.4 22 0.00048 26.9 2.8 28 283-312 109-136 (140)
429 PF11817 Foie-gras_1: Foie gra 47.3 1.2E+02 0.0025 26.2 7.8 25 28-52 13-37 (247)
430 COG5116 RPN2 26S proteasome re 47.3 2.9E+02 0.0062 27.1 11.4 33 55-87 53-85 (926)
431 PF12862 Apc5: Anaphase-promot 47.0 99 0.0021 21.7 7.2 18 35-52 8-25 (94)
432 KOG3364 Membrane protein invol 46.9 1.3E+02 0.0028 23.0 11.2 65 372-437 30-99 (149)
433 KOG4507 Uncharacterized conser 46.6 1.3E+02 0.0029 29.4 8.1 108 272-381 610-717 (886)
434 KOG4507 Uncharacterized conser 46.6 98 0.0021 30.2 7.3 164 250-416 551-717 (886)
435 KOG2659 LisH motif-containing 45.7 1.9E+02 0.004 24.5 9.2 64 124-189 23-91 (228)
436 PF00244 14-3-3: 14-3-3 protei 45.2 2E+02 0.0043 24.7 10.1 58 98-155 7-65 (236)
437 PRK11639 zinc uptake transcrip 45.2 1.4E+02 0.0031 23.9 7.4 60 118-178 17-76 (169)
438 PF15297 CKAP2_C: Cytoskeleton 45.1 2.4E+02 0.0053 25.6 10.2 64 390-455 119-186 (353)
439 KOG0991 Replication factor C, 45.0 2E+02 0.0043 24.6 13.2 136 270-415 131-279 (333)
440 KOG2471 TPR repeat-containing 44.0 3E+02 0.0065 26.4 12.9 37 74-110 30-70 (696)
441 PF10255 Paf67: RNA polymerase 43.9 2.8E+02 0.0061 26.1 10.7 20 98-117 128-147 (404)
442 KOG0403 Neoplastic transformat 43.9 2.9E+02 0.0062 26.2 19.4 63 377-440 512-574 (645)
443 PF10345 Cohesin_load: Cohesin 43.4 3.6E+02 0.0078 27.2 37.8 162 27-189 61-252 (608)
444 smart00386 HAT HAT (Half-A-TPR 43.4 47 0.001 16.9 4.1 17 39-55 1-17 (33)
445 PHA02875 ankyrin repeat protei 43.0 2.9E+02 0.0063 26.0 22.1 43 442-484 346-389 (413)
446 PF09670 Cas_Cas02710: CRISPR- 42.9 2.8E+02 0.0062 25.9 12.2 52 280-332 142-197 (379)
447 COG0790 FOG: TPR repeat, SEL1 42.8 2.4E+02 0.0052 24.9 20.1 25 249-273 252-276 (292)
448 PF02184 HAT: HAT (Half-A-TPR) 41.8 58 0.0013 17.5 3.2 13 390-402 3-15 (32)
449 KOG2908 26S proteasome regulat 41.3 2.7E+02 0.006 25.2 10.1 82 135-216 83-176 (380)
450 PF09670 Cas_Cas02710: CRISPR- 41.3 3E+02 0.0066 25.7 12.1 55 313-368 140-198 (379)
451 PF04190 DUF410: Protein of un 41.2 2.4E+02 0.0053 24.6 13.1 81 60-155 89-169 (260)
452 PF09454 Vps23_core: Vps23 cor 40.4 60 0.0013 21.0 3.7 50 159-209 5-54 (65)
453 PF07064 RIC1: RIC1; InterPro 40.4 2.5E+02 0.0054 24.5 15.4 61 202-263 184-249 (258)
454 KOG3807 Predicted membrane pro 40.0 2.8E+02 0.0061 25.0 15.7 17 349-365 285-301 (556)
455 PF11817 Foie-gras_1: Foie gra 39.8 2.2E+02 0.0047 24.6 8.2 21 345-365 184-204 (247)
456 PF10366 Vps39_1: Vacuolar sor 39.7 1.5E+02 0.0032 21.6 7.3 26 307-332 42-67 (108)
457 KOG1586 Protein required for f 39.3 2.5E+02 0.0053 24.1 22.0 22 244-265 164-185 (288)
458 KOG0292 Vesicle coat complex C 39.3 4.3E+02 0.0092 27.7 10.6 189 25-262 593-781 (1202)
459 PF03745 DUF309: Domain of unk 38.8 1E+02 0.0023 19.6 5.6 14 317-330 12-25 (62)
460 cd00280 TRFH Telomeric Repeat 38.2 2.2E+02 0.0048 23.2 12.1 22 276-297 118-139 (200)
461 PF12862 Apc5: Anaphase-promot 37.9 1.4E+02 0.0031 20.9 7.9 22 416-437 48-69 (94)
462 KOG2300 Uncharacterized conser 37.7 3.8E+02 0.0082 25.8 28.7 377 101-484 56-528 (629)
463 PF09986 DUF2225: Uncharacteri 37.4 80 0.0017 26.5 5.0 26 97-122 170-195 (214)
464 PF10366 Vps39_1: Vacuolar sor 37.2 1.6E+02 0.0035 21.4 7.1 27 271-297 41-67 (108)
465 COG4003 Uncharacterized protei 36.1 1.4E+02 0.003 20.3 5.4 25 98-122 37-61 (98)
466 KOG4521 Nuclear pore complex, 36.0 6.1E+02 0.013 27.7 13.3 130 36-178 931-1070(1480)
467 cd07153 Fur_like Ferric uptake 35.9 1.2E+02 0.0027 22.1 5.5 41 101-141 9-49 (116)
468 PRK11639 zinc uptake transcrip 35.4 2.3E+02 0.0051 22.7 7.9 60 153-213 17-76 (169)
469 PF10475 DUF2450: Protein of u 35.1 3.3E+02 0.0071 24.3 10.0 52 168-225 104-155 (291)
470 PRK09857 putative transposase; 35.1 3.3E+02 0.0071 24.3 9.6 66 130-196 209-274 (292)
471 PRK09462 fur ferric uptake reg 35.0 2.2E+02 0.0047 22.2 7.5 35 142-176 32-66 (148)
472 smart00804 TAP_C C-terminal do 34.4 1.1E+02 0.0025 19.6 4.2 24 38-61 38-61 (63)
473 PF14669 Asp_Glu_race_2: Putat 34.3 2.6E+02 0.0057 23.0 14.4 183 155-364 1-206 (233)
474 KOG2908 26S proteasome regulat 33.2 3.8E+02 0.0082 24.4 10.4 83 343-425 79-173 (380)
475 PHA02537 M terminase endonucle 33.0 3.1E+02 0.0067 23.4 10.0 37 19-57 79-115 (230)
476 PF04190 DUF410: Protein of un 32.9 3.4E+02 0.0073 23.7 17.7 66 120-185 42-113 (260)
477 PF01475 FUR: Ferric uptake re 32.8 1.2E+02 0.0025 22.5 4.9 44 98-141 13-56 (120)
478 KOG1166 Mitotic checkpoint ser 32.6 1.4E+02 0.0029 31.8 6.6 60 29-88 82-141 (974)
479 COG0790 FOG: TPR repeat, SEL1 32.3 3.5E+02 0.0077 23.8 22.6 45 357-404 173-221 (292)
480 KOG3364 Membrane protein invol 32.3 2.3E+02 0.0051 21.8 10.0 71 336-408 29-103 (149)
481 COG4003 Uncharacterized protei 32.3 1.6E+02 0.0035 19.9 5.4 30 133-163 37-66 (98)
482 PF11417 Inhibitor_G39P: Loade 31.8 79 0.0017 20.9 3.3 37 24-60 28-64 (71)
483 PRK09857 putative transposase; 31.5 3.8E+02 0.0082 23.9 9.7 58 385-443 217-274 (292)
484 PF09090 MIF4G_like_2: MIF4G l 31.4 2.6E+02 0.0057 24.2 7.4 107 337-444 9-127 (253)
485 KOG3636 Uncharacterized conser 30.9 4.6E+02 0.01 24.8 9.1 95 113-208 169-271 (669)
486 PF11768 DUF3312: Protein of u 30.9 5.2E+02 0.011 25.3 10.0 25 201-225 412-436 (545)
487 PF10475 DUF2450: Protein of u 30.5 3.9E+02 0.0085 23.8 12.1 19 236-254 199-217 (291)
488 KOG3677 RNA polymerase I-assoc 30.5 4.1E+02 0.0088 25.0 8.3 218 91-310 200-425 (525)
489 cd07153 Fur_like Ferric uptake 30.4 1.6E+02 0.0034 21.5 5.3 36 141-176 14-49 (116)
490 KOG4279 Serine/threonine prote 29.7 6.4E+02 0.014 26.0 12.5 18 420-437 377-394 (1226)
491 PF15297 CKAP2_C: Cytoskeleton 29.7 4.4E+02 0.0095 24.1 9.7 63 144-208 120-186 (353)
492 KOG2062 26S proteasome regulat 29.7 6.3E+02 0.014 25.9 27.1 89 346-437 544-634 (929)
493 KOG1839 Uncharacterized protei 29.6 8E+02 0.017 27.1 13.2 27 58-84 970-996 (1236)
494 TIGR03581 EF_0839 conserved hy 29.4 2.7E+02 0.0059 23.3 6.4 63 303-365 162-234 (236)
495 PF14863 Alkyl_sulf_dimr: Alky 29.3 2.2E+02 0.0047 22.1 5.8 46 28-75 73-118 (141)
496 COG3107 LppC Putative lipoprot 29.0 5E+02 0.011 25.4 8.9 165 1-177 39-217 (604)
497 PF11838 ERAP1_C: ERAP1-like C 28.6 4.3E+02 0.0094 23.7 19.1 190 99-294 45-262 (324)
498 PF01475 FUR: Ferric uptake re 28.6 1.5E+02 0.0031 22.0 4.8 42 133-174 13-54 (120)
499 PF02607 B12-binding_2: B12 bi 28.2 1.8E+02 0.004 19.3 5.3 33 387-419 14-46 (79)
500 KOG2034 Vacuolar sorting prote 28.1 7.2E+02 0.016 26.1 29.0 322 67-436 364-688 (911)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-70 Score=545.14 Aligned_cols=463 Identities=79% Similarity=1.275 Sum_probs=448.3
Q ss_pred cCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 011323 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (488)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 101 (488)
+.+...++..++.+++.|++++|+++|++|.+.+..+++..++..++..|...|..++|.++|+.+..||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45678899999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011323 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (488)
|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 261 (488)
.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987555789999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHH
Q 011323 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (488)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (488)
+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (488)
|+.++.+|++.|++++|.++|++|.+.++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCCccccceee
Q 011323 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWYV 484 (488)
Q Consensus 422 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~ 484 (488)
.|++++|.+++++|.+.|+.||..+|++++.+|.+++++|..+.+.+..++++++.+...|+.
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 999999999999999999999999999999988878999999999888888887776667753
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.7e-62 Score=484.60 Aligned_cols=428 Identities=23% Similarity=0.404 Sum_probs=254.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHhcCCh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~ 108 (488)
+.+.+.|.+++|+.+|..|.. ++...+..++..|.+.|++++|.++|+.+. .||..+|+.+|.+|++.|++
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v 488 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH
Confidence 334455666666666655542 233444455555555566666666665543 35666666666666666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 489 d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred Hh--CCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011323 189 RS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (488)
Q Consensus 189 ~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 266 (488)
.. .|+.||..+|+.++.+|++.|++++|.++|+.|... ++.|+..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 569 ~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 54 345566666666666666666666666666666553 45555566666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 011323 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (488)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (488)
||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.++
T Consensus 647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666656666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-----
Q 011323 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----- 421 (488)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----- 421 (488)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka 806 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKA 806 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666665544321
Q ss_pred ------------------cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHH
Q 011323 422 ------------------KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEH 467 (488)
Q Consensus 422 ------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~ 467 (488)
.+..+.|..+|++|.+.|+.||..||+.+|.++.. ..+.+..+.+.
T Consensus 807 ~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~ 872 (1060)
T PLN03218 807 CALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIEN 872 (1060)
T ss_pred hhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 01224556666666666666666666666643322 34444444443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.1e-61 Score=484.39 Aligned_cols=439 Identities=20% Similarity=0.292 Sum_probs=378.2
Q ss_pred hHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCchH----------------------------------HHHHHHHH
Q 011323 28 QLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDK----------------------------------VYHARFFN 69 (488)
Q Consensus 28 ~~~~~~~l----~~~g~~~~A~~~~~~~~~~~~~~~~~----------------------------------~~~~~l~~ 69 (488)
+..+|+.+ .+.|++++|+++|++|...|+.|+.. .+...++.
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~ 230 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHH
Confidence 44455554 48999999999999999888655422 22345566
Q ss_pred HHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 011323 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (488)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (488)
.+.+.|++++|.++|+.++.+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.++
T Consensus 231 ~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 011323 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 229 (488)
+..+.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|+++|++|... +
T Consensus 311 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~--g 384 (857)
T PLN03077 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD--N 384 (857)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--C
Confidence 9999999999999999999999999999999999999996 578899999999999999999999999999875 7
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (488)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (488)
+.||..+|+.++.+|++.|+++.+.++++.+.+.|+.++..+++.++.+|++.|++++|.++|++|.+. |..+|+.
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~ 460 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTS 460 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHH
Confidence 889999999999999999999999999999999999999999999999999999998888888887653 4555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHH-----------------------------------HHHHHHHhcCC
Q 011323 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-----------------------------------SLMGACSNAKN 354 (488)
Q Consensus 310 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------------------------~l~~~~~~~g~ 354 (488)
++.+|++.|+.++|..+|++|.. +++||..+|+ .++.+|++.|+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 66666666666666666666554 3455555555 45555556666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 434 (488)
+++|.++|+.+ .||..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.
T Consensus 540 ~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 540 MNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 66666666554 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCccccceeeeec
Q 011323 435 AK-EDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWYVTLC 487 (488)
Q Consensus 435 ~~-~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~w~~ll~ 487 (488)
|. +.|+.|+..+|+++++++.+ ++++|.++++.| |..|+ ...|++||+
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd-~~~~~aLl~ 665 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPD-PAVWGALLN 665 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCC-HHHHHHHHH
Confidence 99 67999999999999999998 899999999886 34443 578988875
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-57 Score=450.39 Aligned_cols=431 Identities=18% Similarity=0.275 Sum_probs=310.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 116 (488)
+.++++.|.+++..|.+.|+.| +..+...++..+.+.|++++|.++|+.++.||..+|+.++.+|++.|++++|+++|+
T Consensus 135 ~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 135 ALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213 (697)
T ss_pred hCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHH
Confidence 4555555666666555555433 344455555666677777777777777777777777777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011323 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (488)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (488)
+|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|. .+|
T Consensus 214 ~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~ 289 (697)
T PLN03081 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKT 289 (697)
T ss_pred HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777775 356
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011323 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (488)
Q Consensus 197 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 276 (488)
..+|+.++.+|++.|+.++|.++|++|... ++.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+++.++
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 777777777777777777777777777664 567777777777777777777777777777777777777777777777
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 011323 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (488)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (488)
.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 777777777777777777754 4667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 357 KALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 357 ~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
+|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|.++++++
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 77777777764 577777777777777777777777777777655 35677777777777777777777777777776
Q ss_pred HHcCCCCc-HHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCccccceee
Q 011323 436 KEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWYV 484 (488)
Q Consensus 436 ~~~~~~~~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~w~~ 484 (488)
.+ +.|+ ..+|..++.+|.+ ++++|.++.+.|+.. ........+|..
T Consensus 521 ~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~~g~s~i~ 569 (697)
T PLN03081 521 YG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMHPACTWIE 569 (697)
T ss_pred hC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccCCCeeEEE
Confidence 54 3343 4567777777765 777777777776643 223333455544
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-57 Score=448.54 Aligned_cols=428 Identities=18% Similarity=0.262 Sum_probs=401.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHhcC
Q 011323 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~ 106 (488)
.+..+.+.|++++|+++|++|...+...++..++..++..+.+.++.+.|.+++..+. .||..+|+.++..|++.|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 3445568999999999999999876445677777888888999999999999998764 689999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++.
T Consensus 173 ~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 173 MLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred CHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999996 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011323 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 266 (488)
.+.+.|+.||..+++.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999985 368899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 011323 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (488)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (488)
||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ ||..+||.++
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI 398 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALI 398 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999864 6889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCH
Q 011323 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDV 425 (488)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~ 425 (488)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999985 69999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCC
Q 011323 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGR 475 (488)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~ 475 (488)
++|.+++++| ++.|+..+|++++.+|.. +++.|..+.+.+..+.|.+
T Consensus 479 ~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 479 DEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 9999998754 688999999999999986 8999999999887655543
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.7e-57 Score=454.34 Aligned_cols=441 Identities=19% Similarity=0.292 Sum_probs=311.9
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHH----------------------------------HHHHHHHHH
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV----------------------------------YHARFFNVC 71 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------------------~~~~l~~~~ 71 (488)
......+..+.+.|++++|+++|++|.+.|..|+... ....++..+
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 3344555667789999999999999988765333222 123344556
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011323 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (488)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (488)
.+.|+++.|.++|+.++++|..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+++..+.+++.
T Consensus 132 ~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999988887666655554444444444444
Q ss_pred HHHHcCCCC-------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011323 152 EMVNAGIEP-------------------------------NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (488)
Q Consensus 152 ~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 200 (488)
.+.+.|+.| |..+||+++.+|++.|++++|+++|++|...|+.||..||
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 444444444 4555555555555555555555555555555555555555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011323 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (488)
Q Consensus 201 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (488)
+.++.+|.+.|+.+.+.+++..+... ++.||..+|+.++.+|++.|++++|.++|+.|. .|+..+|+.++.+|+
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~ 365 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHH
Confidence 55555555555555555555555553 455666666666666666666666666666654 245556666666666
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 011323 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (488)
Q Consensus 281 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 360 (488)
+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..+.+.|+.|+..+++.++.+|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC---------------------------------
Q 011323 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--------------------------------- 407 (488)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--------------------------------- 407 (488)
+|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.|
T Consensus 446 vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 7777653 4555666666666666666666666666653 2344
Q ss_pred --------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011323 408 --------------------------------NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 408 --------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (488)
|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|.
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 455677788888889999999999999999999999999999999998
Q ss_pred h--cHHHHHHHHHHhhhccCCCCc
Q 011323 456 R--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 456 ~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
+ ++++|.++.+.|....+..|+
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCc
Confidence 6 899999999999866666665
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-28 Score=254.76 Aligned_cols=435 Identities=12% Similarity=0.044 Sum_probs=262.0
Q ss_pred CCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHH
Q 011323 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMS 100 (488)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~ 100 (488)
...........+++.|++++|+++++.+.... |.+...+..++..+...|++++|.+.|+++. +.+...+..+..
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 507 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 33444445555667777777777777776654 4555556666666666777777777776543 344555666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 180 (488)
.+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+...|++++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHH
Confidence 6677777777777777766553 4456666666666667777777777776666543 3345556666666666777777
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (488)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 260 (488)
|..+++.+.... +.+...|..+..++...|++++|...|+.+.... +.+...+..+..++...|++++|...++.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777776666543 4455666666666666677777777666665431 123345556666666666666666666666
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH
Q 011323 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340 (488)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 340 (488)
.+.. +.+...+..++..+...|++++|..+++.+.+.+.. +...+..+...+...|++++|...++.+...+ |+..
T Consensus 662 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 737 (899)
T TIGR02917 662 LELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ 737 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence 6543 444566666666666666666666666666655432 45555566666666666666666666666543 2334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (488)
++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|+++.+.. +++...+..+...+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55556666666666666666666665543 3455566666666666666666666666665542 344555666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhhccCC
Q 011323 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG 474 (488)
Q Consensus 421 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~ 474 (488)
..|+ .+|+.+++++.+.... +...+..+...+.. ++++|....+.+....|.
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6666 5566666665553211 12223333333332 566666666666655554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-27 Score=248.68 Aligned_cols=433 Identities=14% Similarity=0.085 Sum_probs=279.9
Q ss_pred ccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHH
Q 011323 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNM 97 (488)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 97 (488)
.|.+..........+.+.|++++|.+.|+++.+.+ |.+......++..+...|++++|.+.|+.+. +.+..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 44444444445555556777777777777776654 4555555556666666677777777776553 345556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (488)
+...+.+.|+.++|...++.+.+.+ +.+...+..++..+...|++++|.++++.+.+.. +.+..+|..+..++...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 6677777777777777777766554 4455566667777777777777777777766543 4456667777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 011323 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
+++|...|+++.+.. +.+...+..+..++...|++++|...++++.... +.+..++..+...+...|++++|..++
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK---PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777766543 3345566666677777777777777777666531 223456666666777777777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (488)
+.+.... +.+...+..+...+...|++++|...++.+...+. +..++..+..++.+.|++++|.+.+..+.+.. +.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 7776654 45556666666777777777777777777666543 33555566667777777777777777766653 44
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
+...+..+...|...|++++|...|+++.+.. +++..+++.+...+...|+ .+|+..++++.+.. +-++.++..+..
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~ 845 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGW 845 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 56666677777777777777777777776654 4556666777777777777 66777777766531 334555666666
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhh
Q 011323 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 469 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~ 469 (488)
.+...|++++|.++++++.+.+.. +..++..+...+.+ ++++|.++.+.++
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 677777777777777777765443 55566666665554 6777766666653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=8.5e-22 Score=205.08 Aligned_cols=429 Identities=12% Similarity=0.063 Sum_probs=325.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CC---HHHHH-----------
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PT---LSTFN----------- 96 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~----------- 96 (488)
..++..|++++|+..|++.++.. |.+...+..++.++...|++++|+..|+++.+ |+ ...|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 44568899999999999999886 77888888899999999999999999987652 22 11121
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011323 97 -MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (488)
Q Consensus 97 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (488)
.....+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 12345778999999999999998874 5567788889999999999999999999998763 334666777777774 4
Q ss_pred CCHHHHHHHHHHHHhCCCC--------CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHh
Q 011323 176 GQVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACAN 246 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 246 (488)
++.++|...++.+...... .....+..+...+...|++++|++.|++.... .|+ ...+..+...|.+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH
Confidence 6789999888765432100 01223455677788899999999999999875 343 4466778889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhc
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHA 317 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~ 317 (488)
.|++++|...++.+.+.. +.++..+..+...+...++.++|...++.+......++.. .+......+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999999988765 4566666666667788999999999998865433222221 123456678889
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
|+.++|..+++. .+.++..+..+...+.+.|++++|...|+++.+.. +.+...+..++..|...|++++|++.+
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999998872 34566777888999999999999999999998875 557888999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC-C----cHHHHHHHHHHHhh--cHHHHHHHHHHhhh
Q 011323 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI-P----NLVMFKCIIGMCSR--RYEKARTLNEHVLS 470 (488)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~--~~~~a~~~~~~~~~ 470 (488)
+.+.+.. +.+..++..+..++...|++++|.++++++.+.... | +...+..+...+.. ++++|...++....
T Consensus 661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9887642 334666777888899999999999999998875322 2 12334434444443 79999999888875
Q ss_pred ---ccCCCCcc
Q 011323 471 ---FNSGRPQI 478 (488)
Q Consensus 471 ---~~~~~~~~ 478 (488)
+.|..|.+
T Consensus 740 ~~~~~~~~p~~ 750 (1157)
T PRK11447 740 ASGITPTRPQD 750 (1157)
T ss_pred hcCCCCCCCCC
Confidence 33444443
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.4e-22 Score=178.89 Aligned_cols=434 Identities=13% Similarity=0.094 Sum_probs=268.5
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHH
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVC 102 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~ 102 (488)
...+.....+.+.|++.+|.+...-.-+.+ |.+.....++...+....+++.....-... .+.-..+|..+..++
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 346667777779999999999887776666 444444444444444434444333322211 234456777777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHH
Q 011323 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG-ALIDGCAKAGQVAKA 181 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a 181 (488)
-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+..... .+...+-..|+..+|
T Consensus 127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchh
Confidence 77777777777777777653 335667777777777777777777777777665 45444332 333444456777777
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMI 260 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 260 (488)
...|.+..+.. +-=...|+.|...+-..|+...|++.|++...- +|+ ...|..+...|...+.+++|...+.+.
T Consensus 204 ~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 204 KACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred HHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 77776666552 122456666666677777777777777776543 332 235666666677777777777766666
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH
Q 011323 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340 (488)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 340 (488)
.... +....++..+...|...|..+.|+..+++.++..+. =...|+.+..++-..|++.+|...+.+..... +-...
T Consensus 279 l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~had 355 (966)
T KOG4626|consen 279 LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHAD 355 (966)
T ss_pred HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHH
Confidence 5543 334556666666666777777777777766664332 23456667777777777777777776666653 23455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVAC 419 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 419 (488)
..+.|...|...|.++.|..+|....+.. +--...++.|...|-+.|++++|+..+++.++ +.|+ ...|+.+...|
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHH
Confidence 66666777777777777777776665432 12234556666666677777777777776665 4565 45666666666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 420 ERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
-..|+.+.|.+.+.+++. +.|... ..+.|...+.. +..+|...++..+.++|.-|+
T Consensus 433 ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 667777777777666665 444443 23333344432 566666666666666666555
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=2.3e-20 Score=194.49 Aligned_cols=421 Identities=13% Similarity=0.064 Sum_probs=252.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC-CC----------------------HHH
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PT----------------------LST 94 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----------------------~~~ 94 (488)
.|+.++|++.++++.+.. |.+...+..+..++...|+.++|++.++++.. +. ...
T Consensus 160 ~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 467777777777777665 56666666666777667777777776665421 00 000
Q ss_pred HH----------------------------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 011323 95 FN----------------------------------MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (488)
Q Consensus 95 ~~----------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (488)
+. .....+...|++++|+..|++..+.. +.+...+..+..++.+.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 00 11223455677777777777777653 44666777777777777
Q ss_pred CCHhHHHHHHHHHHHcCCCC-CHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011323 141 GKVDAMFEVFHEMVNAGIEP-NVHTYG------------ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (488)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 207 (488)
|++++|+..|++..+..... ....|. .....+.+.|++++|...|++..... +.+...+..+..++
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~ 395 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVA 395 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 77777777777776653211 111111 12334566777777777777777653 33455666677777
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHH------------------------------------------HH
Q 011323 208 GQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMK------------------------------------------AC 244 (488)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~------------------------------------------~~ 244 (488)
...|++++|++.|++.... .|+ ...+..+.. .+
T Consensus 396 ~~~g~~~eA~~~y~~aL~~----~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 396 MARKDYAAAERYYQQALRM----DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777777777777777653 222 122222222 23
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 324 (488)
...|++++|.+.++...+.. +.++..+..+...|.+.|++++|...++++.+.... +...+..+...+...++.++|.
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHH
Confidence 33455555555555554443 334444445555555555555555555555443221 2222333333344455555555
Q ss_pred HHHHHHHHCCCCccH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 011323 325 EILQEAKNQGISVGI---------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 325 ~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
..++.+......++. ..+......+...|+.++|..+++. .+.+...+..+...+.+.|++++|+.
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 555443322111111 1122334556667777777777661 24566677788899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhh--cHHHHHHHHHHhhhcc
Q 011323 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMCSR--RYEKARTLNEHVLSFN 472 (488)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~--~~~~a~~~~~~~~~~~ 472 (488)
.+++..+.. +.+...+..++..+...|++++|++.++.+.+. .|+. ..+..+..++.. ++++|.++++.+....
T Consensus 625 ~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 625 AYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999998852 446888999999999999999999999988764 3333 233334444433 8999999999988766
Q ss_pred CCCC
Q 011323 473 SGRP 476 (488)
Q Consensus 473 ~~~~ 476 (488)
+.++
T Consensus 702 ~~~~ 705 (1157)
T PRK11447 702 KSQP 705 (1157)
T ss_pred ccCC
Confidence 5544
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.4e-21 Score=181.88 Aligned_cols=302 Identities=13% Similarity=0.109 Sum_probs=190.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCC
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 177 (488)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|.++++.+...+..++ ..++..+...|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456678888888888887764 44566777788888888888888888887776432211 2456777778888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---cchHHHHHHHHHhcCCHHHHH
Q 011323 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 254 (488)
+++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+...... .+. ...+..+...+...|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888888888887653 445667777778888888888888888877654211 111 112334555566667777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
..++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777666543 334455666666666667777777776666654332223445566666666666666666666666543
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHH
Q 011323 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTI 410 (488)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~ 410 (488)
|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 33344456666666666666666666665543 3555566655555443 345666666666666555554444
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.4e-21 Score=179.39 Aligned_cols=303 Identities=17% Similarity=0.110 Sum_probs=246.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHHHHcc
Q 011323 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD---RVVFNALITACGQS 210 (488)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 210 (488)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445678899999999999999874 34567899999999999999999999999987542221 24677888999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChH
Q 011323 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWE 286 (488)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 286 (488)
|++++|..+|+++... .+.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999864 234566888899999999999999999999887653322 124556777888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 287 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
+|...++++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999876433 5667788889999999999999999999876533335678889999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHcCCCCc
Q 011323 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPN 443 (488)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 443 (488)
+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|+
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 763 66667788899999999999999999998874 6888888888877664 5688999999999998766666
Q ss_pred HH
Q 011323 444 LV 445 (488)
Q Consensus 444 ~~ 445 (488)
..
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 54
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=4.6e-21 Score=170.87 Aligned_cols=388 Identities=15% Similarity=0.151 Sum_probs=322.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
+-.+++...+--....+.. |.....+..++.+++..|++++|+.+++.+. +..+..|-.+..++...|+.+.|.+
T Consensus 94 q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred cccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHH
Confidence 4445565555555555554 7788888999999999999999999999775 3456789999999999999999999
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 114 VLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (488)
.|....+. .|+.. ....+...+...|+.++|...+.+.++. .|. ...|+.|...+-.+|+...|++.|++....
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 99988875 45544 4445556666789999999999888876 444 467889999999999999999999998876
Q ss_pred CCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 011323 192 NVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (488)
Q Consensus 192 ~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 269 (488)
.|+ ...|..|...|...+.+++|...+.+.... .|+ ...+..+...|-..|+++.|+..+++..+.. +.-+
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~ 320 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFP 320 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCch
Confidence 455 678889999999999999999999888753 454 4567777788899999999999999998875 4457
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (488)
..|+.+.+++...|+..+|.+.+.+....... -....+.|...|...|.++.|..+|....+.. +--....+.|...|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIY 398 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHH
Confidence 89999999999999999999999998886443 55678899999999999999999999988753 22356789999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHH
Q 011323 350 SNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (488)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 427 (488)
-++|++++|+..+++.++. .|+ ...|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|...|..+|+..+
T Consensus 399 kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999999875 455 57899999999999999999999999887 4676 5788999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHH
Q 011323 428 GLMLLSQAKEDGVIPNLV 445 (488)
Q Consensus 428 a~~~~~~~~~~~~~~~~~ 445 (488)
|+.-++...+. +||..
T Consensus 475 AI~sY~~aLkl--kPDfp 490 (966)
T KOG4626|consen 475 AIQSYRTALKL--KPDFP 490 (966)
T ss_pred HHHHHHHHHcc--CCCCc
Confidence 99999999884 44443
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.1e-19 Score=177.34 Aligned_cols=326 Identities=11% Similarity=0.037 Sum_probs=156.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (488)
+..+.+.|++++|+.+++...... +-+...+..++.+....|++++|.+.++++.... +.+...+..+...+...|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 344445555555555555554432 2233334444444444555555555555555442 22334444555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcc-hHHHHHHHHHhcCCHHHHHHHH
Q 011323 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
++|...+++..... +.+...+..+...+...|++++|...++.+... .|+.. .+..+ ..+...|++++|...+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE----VPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 55555555555432 223444444555555555555555555544332 11111 11111 2244455555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHC
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEAKNQ 333 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~ 333 (488)
+.+.+....++......+...+...|++++|...+++..+.... +...+..+...+...|++++ |...+++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 55444332222223333344455555555555555555544322 34444555555555555553 45555555554
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHH
Q 011323 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITY 412 (488)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~ 412 (488)
. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|+..++++.+. .|+. ..+
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH
Confidence 3 2244555555555555555555555555555443 233444445555555555555555555555542 2332 222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 413 SILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..+..++...|++++|...|+++.+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234445555555555555555554
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.9e-19 Score=176.30 Aligned_cols=395 Identities=12% Similarity=0.025 Sum_probs=286.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCCh
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 108 (488)
-+.+.+.|++++|+..|++.++.. |. ...+..++..+...|++++|++.++.+. +.+..+|..+..++...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 355668999999999999998875 43 5677788888899999999999998765 45667888899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc---------------------------CCCCC
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---------------------------GIEPN 161 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~ 161 (488)
++|+.-|......+ ..+......++..+........+...++.-... ...+.
T Consensus 211 ~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 99998887665443 112111111111111110011111111100000 00000
Q ss_pred -HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-c
Q 011323 162 -VHTYGALIDG---CAKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-H 234 (488)
Q Consensus 162 -~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~ 234 (488)
...+..+... ....+++++|.+.|+.....+ ..| ....+..+...+...|++++|+..+++.... .|+ .
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~ 365 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVT 365 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcH
Confidence 0001111110 012367899999999998764 223 4566788888889999999999999998864 344 4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..|..+...+...|++++|...|+.+.+.. +.++.++..+...+...|++++|...|++..+..+. +...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 477788888999999999999999998875 567889999999999999999999999999887543 667788888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHcCC
Q 011323 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS------TMNALITALCDGD 388 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~ 388 (488)
.+.|++++|+..++...+.. +.++..++.+...+...|++++|...|++..+.....+.. .++.....+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999998764 4568889999999999999999999999988754221111 1122222344579
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
++++|.+++++..... +.+...+..+...+...|++++|+++|+++.+.
T Consensus 523 ~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999988753 334567888999999999999999999998875
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.7e-19 Score=175.85 Aligned_cols=328 Identities=11% Similarity=0.002 Sum_probs=241.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCC
Q 011323 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (488)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 107 (488)
.+..+.++|++++|+.+++.++... |.+...+..++......|++++|...|+++. +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 3445557888888888888888776 6666666666677777888888888888764 4556677778888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 187 (488)
+++|+..++...+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 888888888888753 44667788888888888888888888887766532 233333333 346778888888888888
Q ss_pred HHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHH----HHHHHHHHHhc
Q 011323 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR----AREVYKMIHKY 263 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 263 (488)
+......++...+..+..++...|++++|...+++..... +.+...+..+...+...|++++ |...++.+...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 7765423344444555677788888888888888887642 2234566677788888888875 78888888776
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHH
Q 011323 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (488)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (488)
. +.+...+..+...+.+.|++++|...+++..+..+. +...+..+..++.+.|++++|...++.+...+. .+...+.
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~~~ 356 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKWNR 356 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHHHH
Confidence 5 556778888888888888888888888888876543 556677778888888888888888888887542 2233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 344 SLMGACSNAKNWQKALELYEHMKSIK 369 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 369 (488)
.+..++...|+.++|...|++..+..
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45667788888888888888877653
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=1.8e-19 Score=179.57 Aligned_cols=405 Identities=10% Similarity=0.010 Sum_probs=307.4
Q ss_pred hhHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 011323 27 EQLHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (488)
Q Consensus 27 ~~~~~~~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 102 (488)
..+.-|..+. ..|+.++|++++.+..... |.+...+..++..+...|++++|.++|+++. +.+...+..+...+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455554444 8999999999999998744 5667678888899999999999999999853 55677888888999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 182 (488)
...|++++|+..++...+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999998773 55666 8889999999999999999999999874 335666777888888999999999
Q ss_pred HHHHHHHhCCCCCCH------hHHHHHHHHHH-----ccCCH---HHHHHHHHHHhhCCCCCCCCcc-hHH----HHHHH
Q 011323 183 GAYGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TIG----ALMKA 243 (488)
Q Consensus 183 ~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~~-~~~----~l~~~ 243 (488)
..++.... .|+. .....+++... ..+++ ++|++.++.+.... +..|+.. .+. ..+..
T Consensus 171 ~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 171 GAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHH
Confidence 99886654 2221 11222233222 12234 77888888887542 1223321 111 11334
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCH
Q 011323 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKV 320 (488)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 320 (488)
+...|++++|...|+.+.+.+.+........+...|...|++++|+..|+++.+..... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 56779999999999999887532122233335778999999999999999987754321 134566677788999999
Q ss_pred HHHHHHHHHHHHCCC-----------Ccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 321 EAAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
++|...++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 999999999887531 122 2345667788899999999999999998765 5678889999999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 445 (488)
.|++++|++.+++..+. .|+ ...+...+..+...|++++|..+++++++. .|+..
T Consensus 406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 99999999999999885 454 677778888999999999999999999984 45554
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.90 E-value=2.6e-18 Score=168.08 Aligned_cols=444 Identities=13% Similarity=0.102 Sum_probs=311.5
Q ss_pred ccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchH-HHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHH-HHHHH
Q 011323 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS-TFNML 98 (488)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l 98 (488)
.|..+......+-...++|+++.|++.|+++++.. |.+. .++ -++.++...|+.++|+..+++...|+.. .+..+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 34444455555555669999999999999999887 5553 333 5666677779999999999998765433 33333
Q ss_pred --HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 99 --MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 99 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
...+...|++++|+++++.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 557888899999999999999875 556778888889999999999999999999876 666666655544554566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH------HHHHHHH---H--
Q 011323 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC---A-- 245 (488)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------~~l~~~~---~-- 245 (488)
+..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-..- +.+....+ ..+++.- .
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHHHHHHHHHHhhccccccc
Confidence 6766999999999884 446778888889999999998888877663311 11111000 1111100 0
Q ss_pred hcCC---HHHHHHHHHHHHhcC-CCCCH-----HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011323 246 NAGQ---VDRAREVYKMIHKYN-IKGTP-----EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (488)
Q Consensus 246 ~~~~---~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (488)
...+ .+.|+.-++.+...- ..|.. ....-.+-++...+++.++++.++.+...+......+-..+.++|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1112 344555555554421 11221 12223455677888999999999999988765455678888999999
Q ss_pred cCCHHHHHHHHHHHHHCC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC--H-HHH
Q 011323 317 AGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-----------KPT--V-STM 377 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~--~-~~~ 377 (488)
.+++++|..+++.+.... ..++......|.-+|...+++++|..+++.+.+... .|| - ..+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999886643 123444457788888999999999999998876321 122 1 223
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHH-HHHHHHhh
Q 011323 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMCSR 456 (488)
Q Consensus 378 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~ 456 (488)
..++..+...|+..+|.+.++++... -|-|......+...+...|.+.+|++.++.+... .|+..... ........
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHh
Confidence 44566778889999999999998775 3667888888889999999999999999776653 45544322 23333322
Q ss_pred --cHHHHHHHHHHhhhccCCCCc
Q 011323 457 --RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 457 --~~~~a~~~~~~~~~~~~~~~~ 477 (488)
++.+|..+.+.+....|.++.
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchh
Confidence 788888888888887777765
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=3.3e-18 Score=167.57 Aligned_cols=398 Identities=12% Similarity=-0.005 Sum_probs=285.1
Q ss_pred HHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 011323 66 RFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (488)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (488)
..+..+...|++++|+..|+++. .|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 44566677899999999998865 4677788888889999999999999999988764 45677888899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------------CCCCC
Q 011323 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---------------------------NVKPD 196 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~ 196 (488)
++|+..|......+...+... ..++..+........+...++.-... ...+.
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 999988877655431212211 11111111110111111111100000 00000
Q ss_pred H-hHHHHHHHH---HHccCCHHHHHHHHHHHhhCCCCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 011323 197 R-VVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (488)
Q Consensus 197 ~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 271 (488)
. ..+..+... ....+++++|.+.|+...... ...| ....+..+...+...|++++|...++...... +.....
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~ 367 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQS 367 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHH
Confidence 0 000111100 122367899999999987642 1223 34567777888889999999999999998865 455778
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (488)
|..+...+...|++++|...|++..+.... +..++..+...+...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 889999999999999999999999887543 67888999999999999999999999999875 4467778888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-H-------HHHHHHHHHhhcC
Q 011323 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-I-------TYSILLVACERKD 423 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g 423 (488)
.|++++|...|++..+.. +.+...|+.+...+...|++++|++.|++..+. .|+. . .+...+..+...|
T Consensus 446 ~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhh
Confidence 999999999999988754 456788999999999999999999999998864 2321 1 1122223344579
Q ss_pred CHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhh--cHHHHHHHHHHhhhccCC
Q 011323 424 DVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCSR--RYEKARTLNEHVLSFNSG 474 (488)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~--~~~~a~~~~~~~~~~~~~ 474 (488)
++++|.++++++.+.. |+.. .+..+...+.+ ++++|...++....+.+.
T Consensus 523 ~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 523 DFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred hHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999988754 4443 56666666665 899999999888776554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=1.4e-18 Score=173.21 Aligned_cols=417 Identities=13% Similarity=0.078 Sum_probs=306.0
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011323 45 IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121 (488)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (488)
+..+++ .+.+ +.+.....=...+....|+.++|++++.... +.+...+..+...+...|++++|.++++...+.
T Consensus 2 ~~~~~~-~~~~--~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKS--ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhcc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555 3333 4444444445667777899999999998765 345557899999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011323 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (488)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (488)
. +.+...+..+..++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~ 154 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPT 154 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4 5567788889999999999999999999998873 34556 8888999999999999999999999874 44566667
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc------chHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-CCC
Q 011323 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIK 266 (488)
Q Consensus 202 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~ 266 (488)
.+..++...|..++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 788888889999999999987653 2221 01122222222 12233 6788888888754 112
Q ss_pred CCHH-HH----HHHHHHHHccCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---
Q 011323 267 GTPE-VY----TIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--- 337 (488)
Q Consensus 267 ~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--- 337 (488)
|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+.+.....
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 2211 11 11133456779999999999999987643 332 22335778999999999999999988654211
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 403 (488)
.......+..++...|++++|...++.+.+... .|+ ...+..+...+...|+.++|+++++++...
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 134566677788999999999999999886531 123 234556777888999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
.+.+...+..+...+...|++++|++.++++.+. .|+... +......+.+ ++++|..+.+.+....|.++.
T Consensus 389 -~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 389 -APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 3556788899999999999999999999999884 355432 2222233333 899999999999988887775
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.88 E-value=3.3e-17 Score=140.23 Aligned_cols=434 Identities=16% Similarity=0.189 Sum_probs=307.6
Q ss_pred cccCCCcccccccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHH---Hh--------------
Q 011323 10 QFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV---CK-------------- 72 (488)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~-------------- 72 (488)
+.|...+++-..|..+. +-...-.+|.+|++..+.-+|+.|...+. +-...+...+..+ +-
T Consensus 101 ~l~~F~P~~l~~~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~ 178 (625)
T KOG4422|consen 101 QLPVFRPRHLADPLQVE-TENNLLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVG 178 (625)
T ss_pred cccccCchhcCCchhhc-chhHHHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhh
Confidence 44555555555555555 33334456689999999999999999885 3333322222222 11
Q ss_pred ------------hhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 011323 73 ------------SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (488)
Q Consensus 73 ------------~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (488)
+.|++ |. ++-...+.+..+|..+|.++|+-...+.|.+++++-.....+.+..+||.+|.+-+-.
T Consensus 179 ~~~~~E~S~~sWK~G~v--Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 179 MRNFGEDSTSSWKSGAV--AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred ccccccccccccccccH--HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 12222 22 3333445677899999999999999999999999998877789999999999876544
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH-
Q 011323 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR- 215 (488)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~- 215 (488)
.+ .+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|+..+|..+|..+.+.++..+
T Consensus 256 ~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 VG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred cc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 33 7899999999999999999999999999998764 56788899999999999999999999998887643
Q ss_pred HHHHHHHHhhCC--CCC---CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHcc
Q 011323 216 AFDVLAEMNAEV--HPV---DP-DHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQT 282 (488)
Q Consensus 216 a~~~~~~~~~~~--~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~ 282 (488)
+..++.++...- ..+ .| |...|...|..|.+..+.+.|.++...+.... +.|+ ..-|..+....++.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 445555554321 112 22 34567888999999999999998887665431 2222 12356677788888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-C-------
Q 011323 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-N------- 354 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~------- 354 (488)
...+.-...|+.|.-.-.-|+..+...++.+..-.|.++-..+++..++..|.........-++..+++.+ .
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 99999999999999888888999999999999999999999999999888775544444444555555443 1
Q ss_pred -HHH-----HHHHH-------HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----CCCCHHHHHHHHH
Q 011323 355 -WQK-----ALELY-------EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITYSILLV 417 (488)
Q Consensus 355 -~~~-----a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~ 417 (488)
+.. |..++ .++.+. .......+.+.-.+.+.|+.++|.+++.-+.+.+ ..|......-++.
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 111 11111 122222 3455667777778889999999999999886543 2233444556777
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
+..+.++...|...++-|...+...-....+-+...|
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDF 606 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhc
Confidence 7788889999999998887765544333334444443
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.87 E-value=1.5e-16 Score=159.08 Aligned_cols=179 Identities=12% Similarity=0.005 Sum_probs=111.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHhcCChhHHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLMSVCASSKDSEGAFQV 114 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 114 (488)
..|++++|+..|+++.+.+ |.+...+..+..++...|+.++|+..+++..+ |+...|..++..+ +++.+|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 4699999999999999887 77788888899999999999999999988753 3333333333222 778888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--------HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHH
Q 011323 115 LRLVQEAGLKADCKLYTTLITT--------CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-IDGCAKAGQVAKAFGAY 185 (488)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~ 185 (488)
++++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+.... .+.|...++++.|++++
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 88887664 3344444444443 3333 33333333 2222122233333322 55555555555555555
Q ss_pred HHHHhCC------------------------------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 186 GIMRSKN------------------------------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 186 ~~~~~~~------------------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
.++.+.+ ++.+...+..+...+.+.|+.++|.++++++..
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 5554432 123455566777778888888888888888754
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=3.2e-15 Score=149.67 Aligned_cols=435 Identities=14% Similarity=0.046 Sum_probs=277.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh-hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcC
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (488)
.+.....+++.|++++|++++..+.+.+ +.+......+..++.. .++ +++..+++...+.++..+..+...+.+.|
T Consensus 185 ~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 185 RTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCC
Confidence 4444677789999999999999999998 5566656666666666 355 88888877655678899999999999999
Q ss_pred ChhHHHHHHHHHHHcCCC-CCHHHHH------------------------------HHHHHHHHcCCHhHHHHHHH----
Q 011323 107 DSEGAFQVLRLVQEAGLK-ADCKLYT------------------------------TLITTCAKSGKVDAMFEVFH---- 151 (488)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~-~~~~~~~------------------------------~l~~~~~~~~~~~~a~~~~~---- 151 (488)
+.++|.++++.+...-.. |...++. .++..+.+.++++.+.++..
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 999999999887643211 2222221 12444555555555444421
Q ss_pred -------------------------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHhHHHHHH
Q 011323 152 -------------------------EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N-VKPDRVVFNALI 204 (488)
Q Consensus 152 -------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll 204 (488)
.|.+.. +-+....-.+.-.....|+.++|.++|+..... + -.++.....-++
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 111110 112222222333345677888888888887652 1 122333444666
Q ss_pred HHHHccCC---HHHHHHH----------------------HHHHhhCCCCCCC--CcchHHHHHHHHHhcCCHHHHHHHH
Q 011323 205 TACGQSGA---VDRAFDV----------------------LAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 205 ~~~~~~g~---~~~a~~~----------------------~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
..|.+.+. ..++..+ ++.........++ +...|..+..++.. +++++|...+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 66666655 2233222 1111111111122 33455556655555 7777788877
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (488)
....... |+......+...+...|++++|...++++... .|+...+..+..++.+.|++++|...++...+.. +.
T Consensus 500 ~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 7666543 44334444455556788888888888887554 2333445566677788888888888888887764 22
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
....+..+.......|++++|...+++..+.. |+...|..+...+.+.|++++|+..+++..... +.+...+..+..
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~ 651 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGY 651 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33334344444455688888888888887654 567778888888888888888888888887752 334667777778
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 418 ACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
++...|++++|+..++++.+.. |+.. .+..+..++.. ++++|....+++...+|....
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 8888888888888888887743 3332 33334344433 788888888888877776655
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=6.6e-16 Score=151.39 Aligned_cols=419 Identities=11% Similarity=0.007 Sum_probs=305.1
Q ss_pred cccccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHH
Q 011323 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLST 94 (488)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~ 94 (488)
.+..|.+...-......+...|+.++|+..+++..... +........++..+...|++++|+++|+++. +.++..
T Consensus 61 L~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~ 138 (822)
T PRK14574 61 SKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM--NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDL 138 (822)
T ss_pred HhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 34445553222244455568899999999999998322 3333333444678888899999999999876 456677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+
T Consensus 139 l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 139 ISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQR 215 (822)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 778888999999999999999999875 4566666555555555677767999999999884 4467788889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHH------HHHHHHH---H--ccCC---HHHHHHHHHHHhhCCCCCCCCcch----
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVF------NALITAC---G--QSGA---VDRAFDVLAEMNAEVHPVDPDHIT---- 236 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~~~---~--~~g~---~~~a~~~~~~~~~~~~~~~~~~~~---- 236 (488)
.|-...|+++..+-... +.+...-+ ...++.- . ...+ .+.|+.-++.+.......++....
T Consensus 216 ~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~ 294 (822)
T PRK14574 216 NRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRA 294 (822)
T ss_pred cCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHH
Confidence 99999998877653322 11111111 1111110 0 1112 345566666665532222222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-----CCCHHHHHHHH
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-----IPDEVFLSALI 311 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~ 311 (488)
..-.+-++...|+..++++.++.+...+.+....+-..+.++|...+++++|..+++.+..... .++......|.
T Consensus 295 ~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 374 (822)
T PRK14574 295 RIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLY 374 (822)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHH
Confidence 2234557788999999999999999988766778999999999999999999999999876431 23444467888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-----------Ccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 377 (488)
-++...+++++|..+++.+.+... .|+ ...+..++..+...|++.+|++.++++.... +-|....
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~ 453 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLR 453 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 999999999999999999987422 122 1234456777889999999999999998765 6789999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHH
Q 011323 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (488)
Q Consensus 378 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 446 (488)
..+...+...|.+.+|.+.++..... -+-+..+....+.++...|++++|..+.+.+.+. .|+...
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchh
Confidence 99999999999999999999877664 2334677788889999999999999999988874 455543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.8e-16 Score=146.96 Aligned_cols=404 Identities=13% Similarity=0.110 Sum_probs=248.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCch-HHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcC----Ch
Q 011323 37 RQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK----DS 108 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~----~~ 108 (488)
.+|++++|...|.+..+.+ +.+ ..-+.-+++.+...|+++.+...|+++. +.+..+.-.+...|+..+ ..
T Consensus 319 a~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred hhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 4555555555555554443 233 3333444555555555555555555443 223333333444444332 23
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV----NAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (488)
+.|..++....+.- +.|...|-.+...+..... ..++.+|.... ..+-.+-....|.+...+...|+++.|...
T Consensus 397 d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 44444444444332 3344455544444433322 22244443322 334345556666666666666777777666
Q ss_pred HHHHHhC---CCCCCH------hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcCCHHHHH
Q 011323 185 YGIMRSK---NVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 185 ~~~~~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 254 (488)
|...... ...+|. .+-..+.+.+-..++.+.|.+.|..+... .|+- ..|..+.......+...+|.
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke----hp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE----HPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----CchhHHHHHHhhHHHHhccCcHHHH
Confidence 6665543 111222 22233444455556666777777666654 2321 23333333333446677777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc------------CCHH
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHA------------GKVE 321 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~------------g~~~ 321 (488)
..+......+ ..++..++.+.+.+.+...+..|.+-|..+.+. ...+|..+.-.|.+.|.+. +..+
T Consensus 551 ~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~ 629 (1018)
T KOG2002|consen 551 LLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQE 629 (1018)
T ss_pred HHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHH
Confidence 7777777655 567778888888888888888888877666543 2235777777777765532 4567
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
.|+++|.++.+.. +-+...-|.+.-+++..|++..|..+|.++++.. .....+|-.+..+|..+|++..|+++|+...
T Consensus 630 KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 630 KALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888875 5578888888889999999999999999998765 3456788889999999999999999998865
Q ss_pred h-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011323 402 S-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (488)
Q Consensus 402 ~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 451 (488)
+ ..-..+......|.+++.+.|.+.+|.+.+..+....+.-....+|..+
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 4 3334567888899999999999999999998887765554555555544
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=1.9e-15 Score=142.37 Aligned_cols=451 Identities=12% Similarity=0.078 Sum_probs=327.3
Q ss_pred cccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCH--HH
Q 011323 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTL--ST 94 (488)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~ 94 (488)
..++++..-.+..+.+.-.|++..++++.+.+...... +.-+.-+..+++.+-..|++++|..+|....+ ++. ..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 35566666777778888899999999999988876421 11122355677778888999999999876542 333 33
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+--+...+...|+.+.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++.+..+.- +.|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 4457788999999999999999998764 556777777777777775 4566666666666553 456777877777
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCcc------hHHH
Q 011323 171 GCAKAGQVAKAFGAYGIMR----SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHI------TIGA 239 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~------~~~~ 239 (488)
.+-.. +...++..|.... ..+-.+.+...|.+...+...|+++.|...|+....... ...+|.. +--.
T Consensus 423 l~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 76654 4444466665543 445567788999999999999999999999988866411 1233331 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
+....-..++.+.|.+.|..+.+.. +.-...|--++......+...+|...+++.....- .++..++.+...+.....
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhh
Confidence 4455566778999999999998864 33345555555444455778889999988877533 255666777778888888
Q ss_pred HHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 320 VEAAFEILQEAKNQG-ISVGIISYSSLMGACSN------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..|.+-|..+.+.- ..+|+.+.-.|...|.+ .+..++|+++|.++.+.. +.|...-|.+...++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 888888776665442 23677777777776653 345778999999988876 6688888889999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhh--cHHHHHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--RYEKART 463 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~--~~~~a~~ 463 (488)
.|++.+|..+|.+..+.. .....+|..+...|...|++..|++.|+...+. ...-+..+..+|-+++.+ ++.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999998864 345678889999999999999999999988766 555667777788887765 7888888
Q ss_pred HHHHhhhccCCCCc
Q 011323 464 LNEHVLSFNSGRPQ 477 (488)
Q Consensus 464 ~~~~~~~~~~~~~~ 477 (488)
.........|.++.
T Consensus 738 ~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHhCCccch
Confidence 87777766666654
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=7.8e-17 Score=139.09 Aligned_cols=425 Identities=13% Similarity=0.172 Sum_probs=292.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC----CC----CHHHHHHHHHHHHhcCCh
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP----TLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~ 108 (488)
.+....+|+..|+-+.+...+|....+...+..++.+...+..|+++|.... +. .+.+.+.+...+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 4678899999999999999888888888889999999999999999987553 22 233455555678899999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC------------CHHHHHHHH-----HH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP------------NVHTYGALI-----DG 171 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~-----~~ 171 (488)
+.|+..|+.+.+. .|+..+-..|+-++.-.|+.++..+.|.+|+.....| +....+.-+ +-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999998876 5787776667777778899999999999998653222 222222221 22
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHhH---H--H----------------HHHHHHHccCCHHHHHHHHHHHhhCCC
Q 011323 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV---F--N----------------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (488)
Q Consensus 172 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~---~--~----------------~ll~~~~~~g~~~~a~~~~~~~~~~~~ 228 (488)
.-+.+ +.++++-.-.+++.--+.|+-.. | . .-...+.+.|+++.|+++++-+..+..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22211 22222222222222222222110 0 0 012236788999999999888766432
Q ss_pred CCCCCcch-----------------------------HHHH-----HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011323 229 PVDPDHIT-----------------------------IGAL-----MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (488)
Q Consensus 229 ~~~~~~~~-----------------------------~~~l-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (488)
....-..+ |+.- .+.....|++++|.+.++.....+.. .......
T Consensus 451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfn 529 (840)
T KOG2003|consen 451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFN 529 (840)
T ss_pred hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHH
Confidence 21110000 0100 00112246788888888877765522 2233333
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (488)
+.-.+-..|+.++|++.|-++..--. -+..++..+...|.-..+...|++++.+.... ++.|+..+..|...|-+.|+
T Consensus 530 iglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccc
Confidence 44456778888998888877655322 26777778888888889999999998887665 57788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hhcCCHHHHHHHHH
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERKDDVEVGLMLLS 433 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~ 433 (488)
-..|.+.+-.--+. ++-+..+..-|..-|....-+++++..|++..- +.|+..-|..++..| .+.|++++|..+++
T Consensus 608 ksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 608 KSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99888776543332 355778888888888888889999999998764 689999999888666 46899999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhh-cHHHHHHHHHHhhh
Q 011323 434 QAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLS 470 (488)
Q Consensus 434 ~~~~~~~~~~~~~~~~li~~~~~-~~~~a~~~~~~~~~ 470 (488)
...+. ++-|......|++.+.. -+.++.++..++..
T Consensus 685 ~~hrk-fpedldclkflvri~~dlgl~d~key~~klek 721 (840)
T KOG2003|consen 685 DIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYADKLEK 721 (840)
T ss_pred HHHHh-CccchHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 88764 66788888888888876 45556555554443
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=2.9e-13 Score=127.02 Aligned_cols=368 Identities=14% Similarity=0.141 Sum_probs=277.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHh
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCAS 104 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~ 104 (488)
-+.-.|.+.-+|++++|..++.++++.+ |.+...+..++.++..+|+.+++...+-.+ .+.|...|-.+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 3455677778899999999999999988 888899999999999999999999887543 46778899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA----LIDGCAKAGQVAK 180 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~ 180 (488)
.|+++.|.-.|.+..+.. +++...+-.-+..|-+.|+...|.+.|.++.....+.|..-+.. .+..+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999886 66666666778889999999999999999998743223333333 4556677788899
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-------------------------CCCCCCCc
Q 011323 181 AFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPDH 234 (488)
Q Consensus 181 a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------------------~~~~~~~~ 234 (488)
|.+.++..... +-..+...++.++..+.+...++.+.......... +....++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99998887763 22445677888889999999999888877766551 01112222
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYN--IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 312 (488)
..+ .++-++.+.+..+....+...+.... +..+...|.-+..++.+.|++.+|+.+|..+......-+...|-.+..
T Consensus 379 ~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 221 22233445555555556666666655 334567899999999999999999999999988765557788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITAL 384 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~ 384 (488)
+|...|..++|.+.+....... +.+...-..|...+-+.|+.++|.+++..+.. .+..|+..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 9999999999999999999864 44566667778888999999999999988642 22344444444555666
Q ss_pred HcCCChhHHHHHHHHH
Q 011323 385 CDGDQLPKTMEVLSDM 400 (488)
Q Consensus 385 ~~~~~~~~a~~~~~~~ 400 (488)
...|+.++=+.+...|
T Consensus 537 ~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 537 FQVGKREEFINTASTL 552 (895)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 7777777655544443
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=9e-13 Score=114.93 Aligned_cols=421 Identities=13% Similarity=0.096 Sum_probs=290.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
.++++..|.++|++++..+ ..+..+....+.+-.+.+.+..|+.+++++. +.-...|-..+-.--..|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4677778888888887765 3445555556666667777888888887654 2222344444444455678888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 011323 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 192 (488)
+|+...+. .|+...|++.+..=.+.+.++.|..+++...-. .|++.+|--..+.=-++|....+..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 88777754 788888888888888888888888888887654 678888888888778888888888888777654 1
Q ss_pred C-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--cchHHHHHHHHHhcCCHHHHHHH--------HHHHH
Q 011323 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (488)
Q Consensus 193 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~ 261 (488)
- .-+...+.+....-.++..++.|.-+|+-.... ++.+ ...|......=-+-|+....... ++...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 0 112233444444444566777777777777653 2222 23344444333345554433332 23333
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH--HHHHHHH----H-HH---HhcCCHHHHHHHHHHHH
Q 011323 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALI----D-FA---GHAGKVEAAFEILQEAK 331 (488)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~----~-~~---~~~g~~~~a~~~~~~~~ 331 (488)
+.+ +.|-.++-..+..-...|+.+...++|++.+.. ++|-. ..|...| + ++ ....+++.+.++++...
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333 456667777788788889999999999998875 33321 1111111 1 11 24678899999999888
Q ss_pred HCCCCccHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 011323 332 NQGISVGIISYSSLMGAC----SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (488)
Q Consensus 332 ~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 407 (488)
+. ++-...||.-+--.| .++.++..|.+++...+ |..|-..+|-..|..-.+.+++|.+..++++.++.+ |-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 84 444455665554444 46788999999998876 457888999999999999999999999999999864 55
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhhcc
Q 011323 408 NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472 (488)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~ 472 (488)
|..+|......-...|+.+.|..+|+-+.+. ........|.+.|+.-.. .+++|..++++++...
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 7889999998889999999999999999877 345566678888875443 7999999999987543
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.72 E-value=1.1e-16 Score=141.13 Aligned_cols=263 Identities=18% Similarity=0.160 Sum_probs=113.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHH
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCA 103 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 103 (488)
..+...+.+.+.|++++|++++.........|.+..+...++.++...++.+.|++.++++.. .++..+..++.. .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 344556777899999999999966544432367778888888899999999999999998863 345567777777 7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAF 182 (488)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 182 (488)
..+++++|.++++...+. .++...+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999877655 3566778888899999999999999999987543 3567788899999999999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
+.+++..+.. +.|......++..+...|+.+++.++++...... +.|...+..+..++...|+.++|..+++....
T Consensus 167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 9999999873 3357788889999999999999888888887642 34556778889999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
.. +.|+.+...+..++...|+.++|.++..+..+
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT-----------------
T ss_pred cc-cccccccccccccccccccccccccccccccc
Confidence 75 67889999999999999999999998877654
No 32
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.71 E-value=1.8e-13 Score=126.95 Aligned_cols=292 Identities=11% Similarity=-0.045 Sum_probs=145.1
Q ss_pred hhhHHHHHHHHHhhhCCC--CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 011323 72 KSQKAIKEAFRFFKLVPN--PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (488)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (488)
...|+++.|.+.+.+..+ |++. .+-....+..+.|+++.|.+.+....+....+...........+...|+++.|.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 334556666666655432 2222 2223334555556666666666665543211111222233555556666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH-HHHHHH---HccCCHHHHHHHHHHHh
Q 011323 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITAC---GQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~g~~~~a~~~~~~~~ 224 (488)
.++.+.+.. +-+......+...+...|+++.|.+++..+.+.+.. +...+. .-..++ ...+..++..+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666553 224455566666666666666666666666655432 222221 111111 12222222222333332
Q ss_pred hCCC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 011323 225 AEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (488)
Q Consensus 225 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 302 (488)
...+ ..+.+...+..+...+...|+.+.|.++++...+......... ...........++.+.+.+.++...+..+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 2110 0112344555555666666666666666666665432111111 011111223345566666666665554322
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 303 DE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 303 ~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 45556666677777777777777743332334666666677777777777777777776643
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=1.3e-12 Score=122.83 Aligned_cols=361 Identities=14% Similarity=0.090 Sum_probs=269.8
Q ss_pred HhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 011323 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (488)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (488)
.-..|++++|.+++..+. +.+...|..|...|-+.|+.+++...+-.....+ +.|...|..+.....+.|.+++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 344599999999998875 4567799999999999999999988776555443 557789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh----HHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
-+|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|.. ....+++.+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999874 4455555666788999999999999999998774222222 2334556677788889999999888
Q ss_pred hhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------CCCHHHHHHHH
Q 011323 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI---------------------------KGTPEVYTIAI 276 (488)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l~ 276 (488)
... ..-..+...++.++..+.+...++.+............ .++..++ -++
T Consensus 307 ~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ 384 (895)
T KOG2076|consen 307 LSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM 384 (895)
T ss_pred Hhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence 763 23344566788999999999999999988877665211 1122221 223
Q ss_pred HHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 011323 277 NCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (488)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (488)
-++......+....+...+.+.. +.-+...|.-+..++...|++.+|+.+|..+.....--+...|-.+.++|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34445555555555555555555 3335677888999999999999999999999887655567889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhhcCCHH
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------LGLCPNTITYSILLVACERKDDVE 426 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~l~~~~~~~g~~~ 426 (488)
.+.|...|+.+.... +.+...-..|...+-+.|++++|.+.+..+.. .+..|+..........+...|+.+
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999998764 44556666777888899999999999998642 234555555556667777788877
Q ss_pred HHHHHHHHHH
Q 011323 427 VGLMLLSQAK 436 (488)
Q Consensus 427 ~a~~~~~~~~ 436 (488)
+-+.....|.
T Consensus 544 ~fi~t~~~Lv 553 (895)
T KOG2076|consen 544 EFINTASTLV 553 (895)
T ss_pred HHHHHHHHHH
Confidence 7555554444
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=4.8e-14 Score=122.13 Aligned_cols=389 Identities=15% Similarity=0.142 Sum_probs=258.9
Q ss_pred cCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHH----HHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHH
Q 011323 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----HARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTF 95 (488)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~ 95 (488)
|+...-.+..-+..++..++..|++.|.-.+..-. .-+... ...+...+.+.|++++|+.-|+.+. .||..+-
T Consensus 234 ~nag~lkmnigni~~kkr~fskaikfyrmaldqvp-sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~ 312 (840)
T KOG2003|consen 234 PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVP-SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA 312 (840)
T ss_pred CCCceeeeeecceeeehhhHHHHHHHHHHHHhhcc-ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh
Confidence 33333333344455578889999999987765431 222222 2233344567899999999999875 4666654
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCC------------CHHHHHHHH-----HHHHHcCCHhHHHHHHH---HHHH
Q 011323 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKA------------DCKLYTTLI-----TTCAKSGKVDAMFEVFH---EMVN 155 (488)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~-----~~~~~~~~~~~a~~~~~---~~~~ 155 (488)
-.|+-.+..-|+.++..+.|.+|...-..| +....+.-+ .-.-+.++ ..|.+..- +++.
T Consensus 313 ~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiia 391 (840)
T KOG2003|consen 313 LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIA 391 (840)
T ss_pred hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhc
Confidence 444445555788999999999988642222 222222222 11212211 12222221 1111
Q ss_pred cCCCCCHHH---H--H----------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH--H-------
Q 011323 156 AGIEPNVHT---Y--G----------------ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI--T------- 205 (488)
Q Consensus 156 ~~~~~~~~~---~--~----------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~------- 205 (488)
--+.|+-.. | . .-...+.++|+++.|.+++.-+.+..-+.-...-+.|. +
T Consensus 392 pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~ 471 (840)
T KOG2003|consen 392 PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKD 471 (840)
T ss_pred cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccc
Confidence 112222110 1 0 01224668899999999888776542111111111110 0
Q ss_pred ---------------------------HHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHH---HHHHHhcCCHHHHHH
Q 011323 206 ---------------------------ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL---MKACANAGQVDRARE 255 (488)
Q Consensus 206 ---------------------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~ 255 (488)
.....|++++|.+.+++.... |...-..+ .-.+-..|++++|++
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n------dasc~ealfniglt~e~~~~ldeald 545 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN------DASCTEALFNIGLTAEALGNLDEALD 545 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC------chHHHHHHHHhcccHHHhcCHHHHHH
Confidence 011357889999999988764 22222222 224667899999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011323 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (488)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 335 (488)
.|-++...- ..+..+...+.+.|-...++..|++++.+.... ++-|+..++.|...|-+.|+-..|.+.+-.--+. +
T Consensus 546 ~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-f 622 (840)
T KOG2003|consen 546 CFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-F 622 (840)
T ss_pred HHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-c
Confidence 998887642 457788889999999999999999999887664 3448899999999999999999999887655443 5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 414 (488)
+-+..+...|...|....-+++++..|++..- +.|+..-|..++..| .+.|++.+|..++++..+. ++.|.....-
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkf 699 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKF 699 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHH
Confidence 67889999999999999999999999998754 479999999888655 5789999999999998775 7888999999
Q ss_pred HHHHHhhcCC
Q 011323 415 LLVACERKDD 424 (488)
Q Consensus 415 l~~~~~~~g~ 424 (488)
|++.|...|-
T Consensus 700 lvri~~dlgl 709 (840)
T KOG2003|consen 700 LVRIAGDLGL 709 (840)
T ss_pred HHHHhccccc
Confidence 9998888775
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=7.8e-13 Score=113.87 Aligned_cols=361 Identities=13% Similarity=0.156 Sum_probs=251.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 62 VYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (488)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (488)
.....++.-.++--..+.|.++++... +.+..++|.+|.+-.- ..-.+++.+|....+.||..|+|+++.+.
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 344444444444467899999998764 4677889999887543 33378899999999999999999999999
Q ss_pred HHcCCHhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCC----CCHhHHHHHH
Q 011323 138 AKSGKVDA----MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK-AFGAYGIMRS----KNVK----PDRVVFNALI 204 (488)
Q Consensus 138 ~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~~~ll 204 (488)
++.|+++. |.+++.+|++.|++|+..+|..+|..+++.++..+ +..++.++.. ..++ .|..-|...+
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 99998766 56788889999999999999999999999888754 3444444432 2222 2345567788
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCC--CCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011323 205 TACGQSGAVDRAFDVLAEMNAEVH--PVDPD---HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (488)
..|.+..+.+-|.++..-+..... -+.|+ .+-|..+....+.....+....+|+.+.-.-.-|++.+...++.+.
T Consensus 364 ~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~ 443 (625)
T KOG4422|consen 364 SICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRAL 443 (625)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHH
Confidence 888888999888888766654311 11222 2335566677788888999999999988777778889999999999
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHHHHHH-------HHHHCCCCcc
Q 011323 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KV--------E-----AAFEILQ-------EAKNQGISVG 338 (488)
Q Consensus 280 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~a~~~~~-------~~~~~~~~~~ 338 (488)
.-.|+++-.-+++.++...|.........-++..+++.. ++ . -|..+++ ++.+ ....
T Consensus 444 ~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~ 521 (625)
T KOG4422|consen 444 DVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWP 521 (625)
T ss_pred hhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCC
Confidence 999999999999999988775544444444444444433 11 0 1111111 2222 3456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC---CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSI-KL---KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 414 (488)
....+.++-.+.+.|+.++|.+++..+.+. +- .|.......++..-...+.+..|..+++-|...+.+.-.-.-+.
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~R 601 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQR 601 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 778888888999999999999999998543 22 23334444566667778889999999998877653322223344
Q ss_pred HHHHHhhcCCHHHH
Q 011323 415 LLVACERKDDVEVG 428 (488)
Q Consensus 415 l~~~~~~~g~~~~a 428 (488)
+...|.-.....++
T Consensus 602 I~e~f~iNqeq~~~ 615 (625)
T KOG4422|consen 602 IMEDFAINQEQKEA 615 (625)
T ss_pred HHHhcCcCHHHHHH
Confidence 44444443333333
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.8e-12 Score=111.64 Aligned_cols=294 Identities=10% Similarity=0.049 Sum_probs=176.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhHHHHHHHHHHccC
Q 011323 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSG 211 (488)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g 211 (488)
..++-...+.+++.+-...+...|.+-+...-+....+.....|+++|+.+|+++.+... --|..+|..++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 344445556666666666666666554444444445555566677777777777766521 1145556555532 222
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011323 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (488)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 291 (488)
+-. +..+.+-...-....|. |...+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+...|.+-
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHH--HHHHHHHHHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 11111111111122333 55666666777777777777777777765 44556677777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011323 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (488)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 371 (488)
++...+-.+. |-..|-.+.++|.-.+...-|+-+|++..... +.|...|.+|..+|.+.++.++|++.|.+....+ .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 7777765444 66777777777777777777777777776653 4567777777777777777777777777776655 3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CC-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKS----LG-LCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+...+..|...|-+.++..+|...+++-++ .| +.|. .....-|..-+.+.+++++|..+......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 4556677777777777777777777666443 22 1221 12222244555666677766666555443
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=2.9e-11 Score=109.81 Aligned_cols=396 Identities=13% Similarity=0.094 Sum_probs=246.9
Q ss_pred CCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHH
Q 011323 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMS 100 (488)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~ 100 (488)
.++..+..|.......+.+.|+-++.+..+-= |....+... +.+...++.|..++.+. .+.+..+|-+-..
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 45667888888888888888888888887753 444443332 33345567777776654 3567788877777
Q ss_pred HHHhcCChhHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh
Q 011323 101 VCASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 174 (488)
.--.+|+.+....++++ +...|+..+...|..=...|-..|.+-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 77778888888877754 3456777788888877788888888888888888887777543 24577777777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 254 (488)
.+.++-|..+|....+. ++.+...|......--..|..+....+|.+.... ++.....|......+-..|+...|.
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 88888888777777654 2344555655555555567777777777776653 2223334444455556667777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
.++..+.+.. +.+...+.+-+.....+..++.|..+|.+.... .|+...|.--+..-.-.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 7777666654 345666666666667777777777777665553 334444544444444556666666666666554
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (488)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 414 (488)
++.-...|..+.+.+.+.++.+.|...|..-.+. ++.....|-.+...--+.|++-+|..++++..-.+ +-+...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 2323445555556666666666666555543332 12333444444444455555566666665554432 334555555
Q ss_pred HHHHHhhcCCHHHHHHHHHHH
Q 011323 415 LLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~ 435 (488)
.++.-.+.|+.+.|..+..++
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 555555666555555444433
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=3.2e-13 Score=124.63 Aligned_cols=282 Identities=11% Similarity=0.018 Sum_probs=209.1
Q ss_pred hhHHHHHHHHHhhhCCC--CCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHhHHH
Q 011323 73 SQKAIKEAFRFFKLVPN--PTLSTFNML-MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMF 147 (488)
Q Consensus 73 ~~~~~~~A~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 147 (488)
..|+++.|++.+...+. +++..+..+ ..+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 35888888888887653 234444333 34447889999999999988764 45543322 3366788889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hHHHHHHHHHHccCCHHHHHHHH
Q 011323 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVL 220 (488)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~ 220 (488)
+.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999988775 446778888889999999999999999999887644322 23444455555556667777777
Q ss_pred HHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011323 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (488)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 300 (488)
+.+... .+.+......+...+...|+.++|..+++...+. ++++... ++.+....++++++.+..+...+..+
T Consensus 253 ~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 253 KNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 776543 2335557777888889999999999999888773 4454322 23344456889999999998888755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (488)
Q Consensus 301 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 367 (488)
. |...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 6777888889999999999999999998885 57888888899999999999999999987754
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=4.4e-13 Score=123.66 Aligned_cols=283 Identities=13% Similarity=0.055 Sum_probs=143.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 182 (488)
.|+++.|.+.+....+.. +-....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666666665544331 111222333334445666677777776666654 34433222 2245566666777777
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc------chHHHHHHHHHhcCCHHHHHHH
Q 011323 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (488)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~ 256 (488)
..++.+.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7666666554 3345566666666666667777666666666542 111110 1122222222233334444444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011323 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (488)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (488)
++.+.+.- +.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 44443322 344555555555556666666666665555543 2222111 1122223355555555555555443 3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011323 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 337 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 400 (488)
-|+..+..+...|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555555555555555555555543 355555555555555555555555555554
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=2.6e-16 Score=138.71 Aligned_cols=258 Identities=18% Similarity=0.166 Sum_probs=61.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (488)
...+.+.|++++|+++++...... .+.+...|..+...+...++.+.|.+.++++...+. -+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 334444555555555553322221 122333333334444444555555555555544331 133334444444 34455
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 011323 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
+++|.+++....+. .++...+..++..+...++++++.++++.+... ...+.+...|..+...+.+.|+.++|.+.+
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555554444332 233344444444455555555555555554332 112233334444444455555555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (488)
++..+.. |.++.....++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|...+++..+.. +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 5554443 3344444455555555555555444444444332 1122334444445555555555555555544432 23
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEH 364 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 364 (488)
|+.....+..++...|+.++|.++.++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444555555555555555544443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.3e-11 Score=107.48 Aligned_cols=294 Identities=15% Similarity=0.061 Sum_probs=223.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc
Q 011323 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (488)
+..++....+.+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.++.+---.|..+|+.++.+-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34455666688888888888888888767666666777778889999999999999987422223556777666433222
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 327 (488)
..+. -+-+.....+ +--+.|...+.+.|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-+
T Consensus 313 skLs---~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SKLS---YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHH---HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1211 1112222222 334478889999999999999999999999997655 5677888888999999999999999
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 011323 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (488)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 407 (488)
+..++-+ +-|-..|-.|.++|.-.+.+.-|.-.|++..... +.|...|.+|..+|.+.++.++|++.|......| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999976 5688999999999999999999999999998876 6789999999999999999999999999998865 45
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc----CCCCcHHHH-HHHHHHHh-h--cHHHHHHHHHHhh
Q 011323 408 NTITYSILLVACERKDDVEVGLMLLSQAKED----GVIPNLVMF-KCIIGMCS-R--RYEKARTLNEHVL 469 (488)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~-~~li~~~~-~--~~~~a~~~~~~~~ 469 (488)
+...+..|...+.+.++.++|...+++..+. |...+.... ...+..+. + ++++|........
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 6788999999999999999999999887653 333332222 22222222 2 6777666544433
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.6e-12 Score=110.10 Aligned_cols=399 Identities=11% Similarity=0.053 Sum_probs=298.6
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHH
Q 011323 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (488)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~ 100 (488)
.++..|-.++ ++..+..|..++++....- |....+....+.+--..|++.-|+++|++-. +|+..+|++.|.
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~ 182 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK 182 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3455555555 8999999999999998763 6666666666666677899999999999765 799999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCCH
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GI-EPNVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~ 178 (488)
.-.+-+..+.|..+++...-. .|++.+|-.....=.++|.+..+.++|....+. |- ..+...+.+....=.++..+
T Consensus 183 fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998753 699999999999999999999999999988764 21 12334455555555678889
Q ss_pred HHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCCHHHHHHH--------HHHHhhCCCCCCCCcchHHHHHHHHHhcC
Q 011323 179 AKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDV--------LAEMNAEVHPVDPDHITIGALMKACANAG 248 (488)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (488)
+.|.-+|+-.++.- +.+ ...|......--+-|+....... ++.+... -+.|-.+|-..++.-...|
T Consensus 261 ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~---np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 261 ERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK---NPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh---CCCCchHHHHHHHHHHhcC
Confidence 99999999888762 222 33444444433344554433332 3333332 1345557777888888889
Q ss_pred CHHHHHHHHHHHHhcCCCCCHH-------HHHHH---HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----
Q 011323 249 QVDRAREVYKMIHKYNIKGTPE-------VYTIA---INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA---- 314 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~-------~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 314 (488)
+.+...++|+.+...- +|-.. +|.-+ +-.-....+++.+.++++..++. ++...+||.-+--.|
T Consensus 337 ~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 9999999999998754 44221 22211 11123468899999999998883 344566666554444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 011323 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
.++.++..|.+++..... ..|-..+|...|..-.+.++++.+.+++++..+.+ +-|..+|......-...|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 467889999999987764 56888999999999999999999999999999877 567788888888888899999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 395 EVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 395 ~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.+|.-.++.. +.-....|...|.--...|.++.|..+++++++.
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999988642 2223456777777778899999999999999875
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.5e-13 Score=111.79 Aligned_cols=278 Identities=13% Similarity=0.122 Sum_probs=165.9
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-CCCHH------HHHHH
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLS------TFNML 98 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~------~~~~l 98 (488)
+.++...|.|+ +.+.++|.++|.+|.+.+ |....++..++.++++.|..+.|+++..... +||.. ....|
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 45666777776 678899999999999876 7778888899999999999999999887654 34332 23334
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHh
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAK 174 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 174 (488)
.+-|...|-++.|+++|..+.+.+ .--......|+..|-...+|++|+++-.++.+.|.++.. ..|.-+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 455667777777777777776543 234456667777777777777777777777766533332 234555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 254 (488)
..+++.|..++.+..+.+ +.....-..+.+.....|+++.|.+.++.+.++++..- ..+...+..+|...|+.++..
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--SEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHhCCHHHHH
Confidence 666677777766666553 22233333444556666666666666666665421111 224455556666666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..+..+.+.... +..-..+........-.+.|...+.+-..+ .|+...+..++..-
T Consensus 270 ~fL~~~~~~~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 270 NFLRRAMETNTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHccCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 666555544322 222233333333333334444433333322 25555555555543
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.67 E-value=1.2e-12 Score=121.63 Aligned_cols=287 Identities=11% Similarity=-0.013 Sum_probs=139.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011323 104 SSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVAK 180 (488)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 180 (488)
..|+++.|.+.+....+. .|+ ...+-....++...|+.+.|.+.+.+..+. .|+. .........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 457777777777665554 233 333344455666667777777777776554 2332 233334666666777777
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHH-HHHHHH---HhcCCHHHHHHH
Q 011323 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-ALMKAC---ANAGQVDRAREV 256 (488)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~ 256 (488)
|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.. .. +...+. ....++ ...+..+.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--LF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 777777776664 3355566666777777777777777777766542 11 111111 000111 111122222223
Q ss_pred HHHHHhcCC---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 257 YKMIHKYNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL-SALIDFAGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 257 ~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 332 (488)
+..+.+... +.++..+..+...+...|+.+.|.+++++..+..+......+ ..........++.+.+.+.++...+
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 322222211 124555555666666666666666666665554322111100 0011111223444444444444443
Q ss_pred CCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011323 333 QGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (488)
Q Consensus 333 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 399 (488)
.. +.++ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 32 2223 334444555555555555555555322222234444444555555555555555555554
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.7e-12 Score=106.60 Aligned_cols=289 Identities=15% Similarity=0.135 Sum_probs=207.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP---NVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 181 (488)
+++.++|.++|-+|.+.. +.+..+.-.|.+.|.+.|.+++|+.+.+.+.+..--+ .......|.+-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567899999999998753 4466677788899999999999999999988642111 122345566778889999999
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----cchHHHHHHHHHhcCCHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++..-+ -.+. ...|.-+...+....+.+.|..++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999998765 3456777889999999999999999988776531 1111 123555556666677888899999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (488)
++..+.+ +.+...--.+.+.....|++..|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+....+
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 8888776 445555566777888889999999999988887665556677888888999999999988888888764333
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHh
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKS 402 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 402 (488)
..-..+..........+.|...+.+-... +|+...+..++..... .|...+.+.+++.|..
T Consensus 283 --~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 --DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred --cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33334444444444556666555544433 6888888888876543 3445666667777753
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=3e-12 Score=112.19 Aligned_cols=388 Identities=11% Similarity=0.069 Sum_probs=256.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHH---HHHHHHHHHHhcCChh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS---TFNMLMSVCASSKDSE 109 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 109 (488)
|...++|++++|++.|.+.+... |+.++++......+...|++++..+..-+..+-++. .+.--.+++-..|+++
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 44458999999999999999876 666899999999999999999999998877654443 5555556788888888
Q ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHHh-----------
Q 011323 110 GAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAK----------- 174 (488)
Q Consensus 110 ~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~----------- 174 (488)
+|+.=..-.. -.|+. +..+--.+=+.+-+ .|.+-.++-.+ .+ +-|+.....+....+..
T Consensus 201 eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred HHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 8754332221 11211 11111111111111 12222222111 11 23444444444333321
Q ss_pred --------------cC---CHHHHHHHHHHHHhC-CCCC-----C------HhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 175 --------------AG---QVAKAFGAYGIMRSK-NVKP-----D------RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 175 --------------~~---~~~~a~~~~~~~~~~-~~~~-----~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
.+ .+..|.+.+.+-... -..+ | ..+.......+.-.|+.-.|..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 01 122222222221100 0011 1 11111112223446888889999988876
Q ss_pred CCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 011323 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (488)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 305 (488)
..+ .+...|.-+...|....+.++....|....+.+ +.++.+|..-...+.-.+++++|..=|++.+...+. +..
T Consensus 355 l~~---~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~ 429 (606)
T KOG0547|consen 355 LDP---AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAY 429 (606)
T ss_pred cCc---ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhH
Confidence 421 122237778888999999999999999999987 667888888888888889999999999998886543 555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHH--H
Q 011323 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-----PTVSTM--N 378 (488)
Q Consensus 306 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~--~ 378 (488)
.|-.+.-+..+.++++++...|++.++. ++-.+..|+.....+...++++.|.+.|+..++.... .+...+ -
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 6666666667888999999999999886 5667899999999999999999999999998865311 112111 1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.++..- =.+++..|..++++..+. .| ....|..|...-...|+.++|+++|++...
T Consensus 509 a~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 509 ALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222111 238899999999999884 44 467899999999999999999999987664
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=7.4e-10 Score=100.95 Aligned_cols=434 Identities=10% Similarity=0.040 Sum_probs=344.1
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--------CCCHHHHHH
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--------NPTLSTFNM 97 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~ 97 (488)
+..+..|.+|.+..-|+.|..+++...+.- |.+..+......+--.+|+.+...++.++.. ..+...|..
T Consensus 407 p~s~dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 407 PQSMDLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 456788999999999999999999998764 6666666666666667788888777776543 457778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (488)
=...|-..|..-.+..+.......|+... -.||..-.+.|.+.+-++-|..+|...++. .+-+...|......--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc
Confidence 88889899999999999999988886543 458999999999999999999999998876 244567788877777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 011323 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 255 (488)
|..++...+|++.... ++-....|....+.+-..|++..|..++.+..... +.+...|...+..-....+++.|..
T Consensus 564 gt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred CcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHH
Confidence 9999999999999876 34456677777788888999999999999987642 2245677788888899999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011323 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (488)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 335 (488)
+|.+.... .++..+|.--+...--.+..++|.+++++..+.-.. -.-.|..+.+.+-+.++.+.|.+.|..-.+. +
T Consensus 640 llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-c 715 (913)
T KOG0495|consen 640 LLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-C 715 (913)
T ss_pred HHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-C
Confidence 99998874 567778877777777789999999999998886322 3456777788889999999999988876665 4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011323 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 415 (488)
+-.+..|-.+...-.+.|.+-.|..++++.+-.+ +.+...|-..|+.-.+.|..+.|..+..+.++. ++-+...|..-
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEa 793 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEA 793 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHH
Confidence 5567788888888888999999999999988766 678899999999999999999999999888765 56677888888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh--hcHHHHHHHHHHhhhccCCCCc
Q 011323 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~a~~~~~~~~~~~~~~~~ 477 (488)
|....+.++-......+++. .-|..+.-++-.++. +++++|.+.+++....+|...+
T Consensus 794 I~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 88888887755555555433 234444445554443 3899999999999877776544
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.3e-13 Score=122.69 Aligned_cols=290 Identities=13% Similarity=0.067 Sum_probs=212.3
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhHHHHHHHHHHccCCHHHHHHH
Q 011323 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDV 219 (488)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~ 219 (488)
+..+|...|..+.+. +.-+..+...+.++|...+++++|.++|+.+.+.. ..-+...|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 457788888885544 23345666788889999999999999999887652 012455666665433221 12222
Q ss_pred H-HHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 220 L-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 220 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
+ +++... . +-...+|..+.++|.-.++.+.|++.|+...+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~-~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDT-D--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhh-C--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 2 222221 1 2234589999999999999999999999988875 446788888888888888999999999887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011323 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (488)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (488)
... +...|--+...|.+.++++.|+-.|+.+.+.+ +-+.+....+...+.+.|+.++|+.+++++...+ +.|+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 332 33445556778899999999999999988876 4466777778888889999999999999988776 34555555
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 444 (488)
..+..+...++.++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|..+.+...++..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5667777889999999999999884 3444667888889999999999999999888875544443
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=8.7e-12 Score=106.86 Aligned_cols=287 Identities=16% Similarity=0.122 Sum_probs=170.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (488)
.|++.+|+.+..+-.+.+ +-....|..-..+.-+.|+.+.+-.++.+..+....++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777766655 3334455556666667777777777777776653355556666666777777777777777
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACANAGQVDRAREVYKM 259 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 259 (488)
+.++.+.+ +..+.......++|.+.|++.....++..+.+.+..-++. ..+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77776664 4456666777777777777777777777776652111111 12345555544444444554455555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH
Q 011323 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (488)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 339 (488)
.... .+.++..-..++.-+.+.|+.++|.++..+..+++..|. ...+ -.+.+-++.+.-.+..+...+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 244455556666666666666666666666666555443 1111 12334455555555555444432 3344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 56666666666666666666666655443 4666666666666666666666666666544
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=2.3e-10 Score=103.93 Aligned_cols=413 Identities=16% Similarity=0.158 Sum_probs=232.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 112 (488)
..++++|++..-...|+..+..=......-+....+.+..+.+-.+-+.++|++..+-++..-+-.+..++..+++++|-
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 34457888888888888887764444444555566666777777777888888777767777777778888888888877
Q ss_pred HHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHhH---HHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 011323 113 QVLRLVQEAG------LKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 113 ~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a 181 (488)
+.+....... .+.+...|..+....++.-+.-. ...++..+... -+| ...|++|..-|.+.|++++|
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 7776655321 12333344444444433322211 12222222221 222 22345555555555555555
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHH-----------------------------------------------------
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACG----------------------------------------------------- 208 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~----------------------------------------------------- 208 (488)
.++|++.... ..+..-|..+..+|+
T Consensus 268 rDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 268 RDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 5555444332 111222222222211
Q ss_pred -------------ccCCHHHHHHHHHHHhhCCCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---H
Q 011323 209 -------------QSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---P 269 (488)
Q Consensus 209 -------------~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 269 (488)
..|+..+...++.+......+..+ -...|..+.+.|-..|+++.|..+|++..+...+.- .
T Consensus 346 ~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 346 PHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred CccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 123344444555554442111111 123467777888888888888888888876543322 3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----------P-------DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 332 (488)
.+|..-...-.++.+++.|.++.+........ | +...|+..++.--..|-++....+++.+.+
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45555566666777888888887765432111 1 123344445555556778888888888887
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCC
Q 011323 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD---GDQLPKTMEVLSDMKSLGLCPN 408 (488)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~ 408 (488)
..+. ++...-.....+..+.-++++.+++++-+..-..|+. ..|+..+.-+.+ ...++.|..+|++.++ |.+|.
T Consensus 506 Lria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 506 LRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 6543 3444434444455666778888888776654334443 456655544442 3467889999998888 56665
Q ss_pred HHH--HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHH
Q 011323 409 TIT--YSILLVACERKDDVEVGLMLLSQAKEDGVIPNL--VMFKCIIG 452 (488)
Q Consensus 409 ~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~ 452 (488)
..- |-.....-.+.|....|+.+++++... +++.. ..|+..|.
T Consensus 584 ~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 332 233333344567778888888876543 33222 24555553
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=2.6e-12 Score=117.00 Aligned_cols=199 Identities=12% Similarity=0.039 Sum_probs=91.4
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011323 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (488)
Q Consensus 196 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (488)
.+.+|..+..+|.-.++.+.|++.|++..+- +| ..++|+.+..-+.....+|.|...|+...... +-+-..|.-
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHh
Confidence 3445555555555555555555555554432 22 33444444444444555555555555444322 111122223
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (488)
+.-.|.+.++++.|+-.|++..+-++. +.+....+...+.+.|+.++|+.+++++...... |+..--.-+..+...++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcc
Confidence 344455555555555555555444333 4444444444555555555555555555444322 22222223334444555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
+++|...++++++.- +.+...|..+...|.+.|+.+.|+.-|..+.+
T Consensus 573 ~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 573 YVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 555555555554431 22334444445555555555555555555544
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=5.4e-11 Score=102.08 Aligned_cols=287 Identities=12% Similarity=0.040 Sum_probs=192.3
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 011323 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (488)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 219 (488)
.|++.+|++...+-.+.+ +.....|..-..+--..|+.+.+-+++.+..+..-.++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 478888888877766665 3334455555666677788888888887777653244555566666777777888888877
Q ss_pred HHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHccCChHHHHHHH
Q 011323 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE-------VYTIAINCCSQTGDWEFACSVY 292 (488)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 292 (488)
++++.... +..........++|.+.|++.....++..+.+.+.-.++. ++..+++-....+..+.-...+
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 77776541 2234466677778888888888888888887777555432 4555666555555555555566
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011323 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (488)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 372 (488)
+....+ ..-++..-.+++.-+.+.|+.++|.++..+..+++..|+ . ...-.+.+.++.+.-.+..+.-.... +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 655543 233556666777777788888888888877777765554 1 11223456666666666666554332 34
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|..+..++.+.|+..+|.+..++....
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 456777777788888888888888887665 4678888888888888888888888777766543
No 53
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=6.9e-09 Score=93.73 Aligned_cols=423 Identities=14% Similarity=0.106 Sum_probs=252.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHH--HHHHH--
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVC-- 102 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--l~~~~-- 102 (488)
.-+...+...++|++++|.+....++..+ |++......-.......+.+++|+.+.+.-... .+++. +=.+|
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 34455677779999999999999999877 666666555666677789999999887765421 12222 23444
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 011323 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 181 (488)
.+.+..++|+..++... +.+..+...-.+.+.+.|++++|.++|+.+.+.+.+- +...-..++.+-. -..+
T Consensus 90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH
Confidence 46889999999888322 2344577777888899999999999999998764321 1111111111110 0011
Q ss_pred HHHHHHHHhCCCCCCHhHHHHH---HHHHHccCCHHHHHHHHHHHhh--------CCCC---CCCCc-chHHHHHHHHHh
Q 011323 182 FGAYGIMRSKNVKPDRVVFNAL---ITACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDH-ITIGALMKACAN 246 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~--------~~~~---~~~~~-~~~~~l~~~~~~ 246 (488)
++ +......| ..+|..+ .-.+...|++.+|+++++.... ...+ +.... ..-..+..++-.
T Consensus 162 -~~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 -QL---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred -HH---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11 22222222 2233333 3345567888888888777611 1100 00000 012234455667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHcc----------------------------------------
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEV----YTIAINCCSQT---------------------------------------- 282 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~---------------------------------------- 282 (488)
.|+-++|..++..+.+... +|... -|.++..-...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888877776653 22211 11111111000
Q ss_pred -----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 011323 283 -----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG--HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (488)
Q Consensus 283 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (488)
+.-+.+.++.... .+..|. ..+.+++..+. +......+.+++...-+....-...+.-..+......|++
T Consensus 316 L~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 0111111111110 112222 33444444332 2234677888887777765444466777778888999999
Q ss_pred HHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHhh
Q 011323 356 QKALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPN----TITYSILLVACER 421 (488)
Q Consensus 356 ~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~ 421 (488)
+.|.+++. .+.+.+..| .+...++..+.+.++.+.|..++.+.... .-.+. ..++.-++..-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999999 555544344 55566777788888887788877776431 01122 2233344444567
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh-cHHHHHHHHHHhhhccC
Q 011323 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLSFNS 473 (488)
Q Consensus 422 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~a~~~~~~~~~~~~ 473 (488)
.|+.++|..+++++.+. ..+|..+...++.++.+ +.++|..+.+.+.....
T Consensus 471 ~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka~~l~k~L~p~~~ 522 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKAESLSKKLPPLKG 522 (652)
T ss_pred cCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHHHHHhhcCCCccc
Confidence 89999999999999985 34678888999999998 99999999887654433
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.1e-10 Score=104.46 Aligned_cols=375 Identities=11% Similarity=0.048 Sum_probs=247.8
Q ss_pred HHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHH
Q 011323 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS-KDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAM 146 (488)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 146 (488)
.++....+.++|...|..+...|+.++.++....... -..++-+++++.+.-. ....+......+.....-...-+..
T Consensus 149 k~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~ 228 (611)
T KOG1173|consen 149 KVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEES 228 (611)
T ss_pred ehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccc
Confidence 3445556677788888777767777766655433221 1112222333211000 0011222222222221111100111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 011323 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
...-.+..-.|...+.........-+...+++.+..++.+...+.. ++....+-.-|.++...|+..+-..+=.++...
T Consensus 229 ~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~ 307 (611)
T KOG1173|consen 229 LTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL 307 (611)
T ss_pred cccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 1111111112234455666666667777889999999999888764 667777777777888888877777776777653
Q ss_pred CCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCH
Q 011323 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDE 304 (488)
Q Consensus 227 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 304 (488)
.+....+|-++.-.|...|..++|.+.|.+....+ +.-...|-.+...|.-.|..++|+..+...-+. |..
T Consensus 308 ---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h--- 380 (611)
T KOG1173|consen 308 ---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH--- 380 (611)
T ss_pred ---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---
Confidence 23345678888888888899999999998887665 223457888888888888889888888766553 221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHHH
Q 011323 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----K--LKPTVSTMN 378 (488)
Q Consensus 305 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~ 378 (488)
.-+--+.--|.+.+..+.|.++|.+..... +.|+..++-+.-...+.+.+.+|...|+..... + ...-..+++
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 113334445777889999999999888764 567888888888888888999999988877621 1 011345677
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (488)
.|..+|.+.+.+++|+..+++.+.. .+.+..++.++.-.+...|+++.|...|.+... +.|+..+...++..+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 8888999999999999999998875 366788899999999999999999999988775 7788877777776543
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.8e-10 Score=103.13 Aligned_cols=288 Identities=14% Similarity=0.048 Sum_probs=225.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011323 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (488)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (488)
...+......-.+-+...+++.+..++.+.+.+.. +++...+..-|.++...|+..+-..+=.++.+.- +-.+.+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 35566667777778888899999999999988764 5677777777778889999888888878887763 556788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011323 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (488)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (488)
+.--|...|...+|.+.|.....-++.. ...|......|+-.|..++|...+..+.+.- +.....+.-+.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHh
Confidence 9988888999999999998876543232 3378888889999999999998887766542 22222333444567888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CccHHHHHHHHHHHHhcCCHH
Q 011323 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI--SVGIISYSSLMGACSNAKNWQ 356 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~ 356 (488)
+++..|.+.|.+.....+. |+..++-+.-.....+.+.+|..+|+..... +. .--..+++.|..+|.+.+.++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 9999999999988776443 7777777777777889999999999877621 11 113457899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011323 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (488)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (488)
+|+..+++..... +.+..++.++.-.|...|+++.|++.|.+.+- +.|+..+...++..+.
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999999998765 67889999999999999999999999999875 6888877777776443
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1e-09 Score=96.64 Aligned_cols=219 Identities=16% Similarity=0.118 Sum_probs=148.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 324 (488)
.-.|+.-.+.+-|+........ +...|--+...|....+..+....|.+..+.+.. ++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 4457777888888887776533 3334666677788888888888888888776554 5566666677777778888888
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 011323 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
.-|++.+... +-+...|-.+..+..+.+.++++...|++.++. ++.-+..|+.....+...+++++|.+.|+...+.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 8888887764 334556666666667788888888888887754 3455678888888888888888888888887653
Q ss_pred CCCC-------HH--HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhh--cHHHHHHHHHHhhhcc
Q 011323 405 LCPN-------TI--TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCSR--RYEKARTLNEHVLSFN 472 (488)
Q Consensus 405 ~~p~-------~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~--~~~~a~~~~~~~~~~~ 472 (488)
.|+ .. ....++..- -.+++..|..+++++.+. .|... .|-+|...... +.++|.++.|....+-
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 232 21 122222222 337888888888888774 34433 44455544443 7888888887765543
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=6.3e-11 Score=114.38 Aligned_cols=249 Identities=13% Similarity=0.023 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHhhhCCC--C-CHHHHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 011323 73 SQKAIKEAFRFFKLVPN--P-TLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (488)
Q Consensus 73 ~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (488)
..+++++|+.+|+++.. | +...|..+..++. ..+++++|...+++..+.+ +.+...+..+...+...
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 34678888888887652 3 4445555554433 2345789999999988775 55778888888888899
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHccCCHHHHHHH
Q 011323 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDV 219 (488)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~ 219 (488)
|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|...
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999988874 3356778888889999999999999999988774 33 33334445556678889999999
Q ss_pred HHHHhhCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 220 LAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 220 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
+++..... .|+ ...+..+..++...|++++|...+..+.... +.+....+.+...|...| +.+...++.+.+.
T Consensus 429 ~~~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98876531 233 2345667777888999999999998876543 334455566666777777 4777777776553
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 299 -GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 299 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
...+..... .-..+.-.|+.+.+... +++.+.+
T Consensus 503 ~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 503 EQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 111222222 33445556776666655 7777664
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=1.4e-10 Score=99.85 Aligned_cols=198 Identities=14% Similarity=0.062 Sum_probs=125.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (488)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 44555566666666666666666665543 344556666666666677777777777666655432 4455556666666
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
..|++++|...+....+... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776665321 2233455556666777777777777777776543 334556666777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777654 244555666666677777777777777666554
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=3e-11 Score=113.42 Aligned_cols=252 Identities=16% Similarity=0.162 Sum_probs=139.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011323 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 193 (488)
++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445555666666666666666666666666665 6666655555555666666666666666655554
Q ss_pred CCCHhHHHHHHHHHHccCCHHH---HHHHHHHHhhC-------------------CCCCCCCcchHHHHHHHHHhcCCHH
Q 011323 194 KPDRVVFNALITACGQSGAVDR---AFDVLAEMNAE-------------------VHPVDPDHITIGALMKACANAGQVD 251 (488)
Q Consensus 194 ~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (488)
.|...+|..|..+|...||+.. +.+.+..+... .++.-||. ...+......|.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHH
Confidence 4556666666666666666433 22211111110 01112221 12223334445555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 330 (488)
.+++++..+....... +... +++-+.... .+++-..+.+...+ .|+..+|..++.+....|+.+.|..++.+|
T Consensus 157 qllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 5555554443322111 1111 233332222 22222222222222 467777777777777777777777777777
Q ss_pred HHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 011323 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (488)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 389 (488)
.+.|++.+.+-|..++-+ .++...+..+++-|...|+.|+..|+...+..+.+.|.
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777777766666644 66667777777777777777777777777666666444
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.4e-08 Score=86.42 Aligned_cols=401 Identities=12% Similarity=0.052 Sum_probs=230.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC------------------CCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC-
Q 011323 30 HSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP- 90 (488)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 90 (488)
+.++.+.+...+..|.+-|....+... .+.+.......+..+...++-+.|......+++.
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 344555567777888888887765431 1333444445556666667777788777777642
Q ss_pred CHHHHHHHHHHHHhcC-ChhH--------------HHHHHHHHHHcCC---------------CCCHHHHHHHHHHHHH-
Q 011323 91 TLSTFNMLMSVCASSK-DSEG--------------AFQVLRLVQEAGL---------------KADCKLYTTLITTCAK- 139 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~-~~~~--------------a~~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~- 139 (488)
...--+.++..+-+.| +-.+ |++.+.-..+.++ +|...+...-+.+++.
T Consensus 128 r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~ 207 (564)
T KOG1174|consen 128 RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQM 207 (564)
T ss_pred cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHH
Confidence 2222333333332222 1111 1222222222221 2222222223333332
Q ss_pred -cCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHccCCHHHH
Q 011323 140 -SGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRA 216 (488)
Q Consensus 140 -~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a 216 (488)
.++...+...+-.+.... ++-|+.....+...+...|+.++|...|++.... .|+. .......-.+.+.|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 344444444444333322 3456667777777888888888888888777654 2322 2222222334556777776
Q ss_pred HHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011323 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (488)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 296 (488)
..+...+.... +.....|-.-.......++++.|+.+-++..+.+ +.+...+-.-...+...+++++|.-.|+...
T Consensus 286 ~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 286 SALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 66666665421 1122223333334455667777777777776655 3445556555667777788888887787766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH-HHH-HhcCCHHHHHHHHHHHHhCCCCCC-
Q 011323 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GAC-SNAKNWQKALELYEHMKSIKLKPT- 373 (488)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~a~~~~~~~~~~~~~~~- 373 (488)
...+ .+..+|..++.+|...|.+.+|...-....+. ++.+..++..+. ..+ .....-++|.++++...... |+
T Consensus 362 ~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y 437 (564)
T KOG1174|consen 362 MLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIY 437 (564)
T ss_pred hcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--Ccc
Confidence 6432 26677888888888888888877776665543 334455555442 222 22333467777777766543 43
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH
Q 011323 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (488)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 444 (488)
....+.+...+...|....++.+++..+. ..||....+.|...+...+.+++|+..|..+.. +.|..
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 44556666777778888888888887765 367777888888888888888888888877776 34444
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3.6e-11 Score=100.21 Aligned_cols=228 Identities=15% Similarity=0.011 Sum_probs=100.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011323 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (488)
Q Consensus 202 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (488)
.+.++|.+.|.+.+|.+.|+....+ .|-..||..+-++|.+..++..|+.++..-.+. .+.+.....-+...+-.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 3444444444444444444444332 222224444444444444444444444444432 12333333334444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (488)
Q Consensus 282 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 361 (488)
.++.++|.++++...+.... ++.....+...|.-.++++-|+.+++++.+.|+. ++..|+.+.-+|.-.++++-+..-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 44444454544444443222 3333444444444444455555555555444422 344444444444444455544444
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 362 YEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 362 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
|++....--.|+ ..+|-.+....+..|++.-|.+.|+-.+..+ ......++.|.-.-.+.|++++|..++..+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 444433211122 2334444444444455555555555444321 22234444444444455555555555544443
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=2.2e-09 Score=100.20 Aligned_cols=291 Identities=13% Similarity=0.118 Sum_probs=155.7
Q ss_pred HHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----
Q 011323 68 FNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---- 140 (488)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 140 (488)
..++...|++++|+++++...+ ............+.+.|+.++|..++..+.+++ |.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3444555566666666554331 223344455566666677777777777776664 33444444444444222
Q ss_pred -CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011323 141 -GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA-KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (488)
Q Consensus 141 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 218 (488)
.+.+...++++++... -|.......+.-.+.....+. .+...+..+...|++ .+|+.+-..|.......-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 2345556666666544 233333333322222222232 334445555556643 344444444444444444444
Q ss_pred HHHHHhhCC------------CCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 219 VLAEMNAEV------------HPVDPDH--ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 219 ~~~~~~~~~------------~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
++....... ..-.|.. .++..+...|...|++++|+++++...++. |..+..|..-...+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 444432210 0011222 233444556667777777777777776664 3446667777777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH--------HHHHHHHHHHHhcCCHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI--------ISYSSLMGACSNAKNWQ 356 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~ 356 (488)
+.+|.+.++........ |...-+-.+..+.+.|+.++|.+++..+.+.+..|.. ........+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 77777777777666554 6666666666677777777777777776655432211 11233456666777777
Q ss_pred HHHHHHHHHH
Q 011323 357 KALELYEHMK 366 (488)
Q Consensus 357 ~a~~~~~~~~ 366 (488)
.|.+.|..+.
T Consensus 323 ~ALk~~~~v~ 332 (517)
T PF12569_consen 323 LALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHH
Confidence 7766655544
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=4.9e-10 Score=108.28 Aligned_cols=260 Identities=10% Similarity=0.037 Sum_probs=170.6
Q ss_pred CCCHhHHHHHHHHHHc-----cCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHH---------hcCCHHHHHHHHH
Q 011323 194 KPDRVVFNALITACGQ-----SGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACA---------NAGQVDRAREVYK 258 (488)
Q Consensus 194 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~---------~~~~~~~a~~~~~ 258 (488)
..+...|...+++... .++.++|...|++.... .|+. ..+..+..++. ..+++++|...++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 3455555555554311 23467888888888764 4443 34444444333 2244788888888
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 011323 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (488)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (488)
++.+.+ +.++..+..+...+...|++++|...+++..+.++. +...+..+..++...|++++|...+++..+.... +
T Consensus 329 ~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~ 405 (553)
T PRK12370 329 KATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-R 405 (553)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 888876 567778888888888888899999999888887544 5667777888888889999999999888886533 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLV 417 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~ 417 (488)
...+..++..+...|++++|...++++.....+.+...+..+..++...|+.++|...++++... .|+ ......+..
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~ 483 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYA 483 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHH
Confidence 33333444456667888888888888775532224555677777888889999999888887653 344 333445555
Q ss_pred HHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcHHHHHHH
Q 011323 418 ACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSRRYEKARTL 464 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~a~~~ 464 (488)
.+...|+ .+...++.+.+. .-.+....+..++.++..+-+.+...
T Consensus 484 ~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 484 EYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH
Confidence 6666663 677767666554 33344444466666655434444444
No 64
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=3.2e-10 Score=97.63 Aligned_cols=196 Identities=16% Similarity=0.107 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 208 (488)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444444444555555555554444331 2223444444444445555555555554444432 223334444444444
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHH
Q 011323 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (488)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 288 (488)
..|++++|.+.+++..... ........+..+...+...|++++|...+....... +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4555555555554443310 000111223333344444444444444444444332 22333444444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (488)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 329 (488)
...+++..+. ...+...+..+...+...|+.+.|..+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444433 112233333334444444444444444433
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.42 E-value=1.9e-08 Score=92.00 Aligned_cols=387 Identities=12% Similarity=0.085 Sum_probs=234.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
..+++...+++.+.+++.. |.......+.+-.....|+.++|........ ..+.++|..+.-.+-..+++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 5788999999999999854 6666666666666677788999998887765 3566789988888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 011323 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN- 192 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 192 (488)
.|+.....+ +.|...+..+.-.-++.|+++........+.+.. +.....|..+..++.-.|+...|..+++...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999998876 6678888888888889999999888888887762 2245678888888888999999999999887664
Q ss_pred CCCCHhHHHHHH------HHHHccCCHHHHHHHHHHHhhCCCCCCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011323 193 VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNI 265 (488)
Q Consensus 193 ~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 265 (488)
-.|+...+.... ....+.|..++|.+.+...... ..|... -.+-...+.+.+++++|..++..+....
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn- 249 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN- 249 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-
Confidence 246666654433 2345678888888887765442 123222 2345567788999999999999998864
Q ss_pred CCCHHHHHHHHHHHHccCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 011323 266 KGTPEVYTIAINCCSQTGDWEFAC-SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344 (488)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (488)
+.+..-|..+..++.+-.+..++. .+|....+.-.. .......=+.......-.+...+++....+.|+++ ++..
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~d 325 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKD 325 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhh
Confidence 334444444555554332333333 555554433111 00001111111111222333344445555555432 2222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 011323 345 LMGACSNAKNWQKALELYEHMK----SIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 408 (488)
+...|-.....+-..++.-.+. ..| -+|+...|. .++..+-+.|+++.|...++...++ .|+
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPT 403 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPT 403 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cch
Confidence 2222221111110111111110 000 134443333 3444555666666666666666543 344
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 409 -TITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 409 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
+..|..=.+.+.+.|+.++|..++++..+.
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 334444456666666666666666666554
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.41 E-value=3.4e-09 Score=98.97 Aligned_cols=290 Identities=14% Similarity=0.137 Sum_probs=160.2
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH-HHHHHHHHHc-----
Q 011323 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV-FNALITACGQ----- 209 (488)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~----- 209 (488)
.+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |+... |..+..+..-
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344556666666665553332 12223334455555556666666666666666553 33333 3333333311
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHH
Q 011323 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (488)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 288 (488)
..+.+...++++++... -|.......+.-.+.....+ ..+...+......|+| .+|+.+-..|.......-.
T Consensus 90 ~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 12345555566665543 12222221111111111112 2333444555555643 3555555555555554444
Q ss_pred HHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 011323 289 CSVYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (488)
Q Consensus 289 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (488)
.+++...... + -.|+. .++..+...|...|++++|+++++..+++. +-.+..|..-.+.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555444321 1 12333 244556677778888888888888888764 33366777777888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHhhcCC
Q 011323 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TY--SILLVACERKDD 424 (488)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~ 424 (488)
|++.+|.+.++..+..+ .-|...-+-.+..+.+.|+.++|.+++....+.+..|... .| .-...+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888887766 3566666667777778888888888888776655433221 12 233567788888
Q ss_pred HHHHHHHHHHHHH
Q 011323 425 VEVGLMLLSQAKE 437 (488)
Q Consensus 425 ~~~a~~~~~~~~~ 437 (488)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776665543
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.40 E-value=9.1e-08 Score=87.66 Aligned_cols=388 Identities=14% Similarity=0.133 Sum_probs=262.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
..|+-++|.+......+.+ +...+....++-++++.+++++|++.|..+. +.|...|.-+.-.-++.|+++...+
T Consensus 53 ~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 6899999999999888876 5666777788888999999999999998764 5678888888777788899999888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHH------HHHhcCCHHHHHHHHH
Q 011323 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALID------GCAKAGQVAKAFGAYG 186 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~ 186 (488)
.-....+.. +.....|..+..++.-.|+...|..+++...+.. -.|+...+..... ...+.|..+.|++.+.
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 888777653 4456678888888889999999999999988764 2467666654433 3456788888888776
Q ss_pred HHHhCCCCCCHhHH-HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH-hcCCHHHHH-HHHHHHHhc
Q 011323 187 IMRSKNVKPDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQVDRAR-EVYKMIHKY 263 (488)
Q Consensus 187 ~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~ 263 (488)
.-... ..|...+ ..-...+.+.++.++|..++..+... .||...|...+..+. +..+.-++. .+|....+.
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r----nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER----NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh----CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 65433 2233333 33456678899999999999999875 677777766555444 333333333 666655543
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC-----
Q 011323 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK----NQG----- 334 (488)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~----- 334 (488)
-.. ....-..=++......-.+..-.++..+.+.|+++ ++..+...|-.-...+-..++.-.+. ..|
T Consensus 284 y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 YPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred Ccc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 211 11111111111112223344556677777888764 34444444433222221111111111 111
Q ss_pred -----CCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 011323 335 -----ISVGII--SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (488)
Q Consensus 335 -----~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 406 (488)
-+|+.. ++-.+...+-..|+++.|...++..+.+ .|+. ..|..-.+.+...|++++|..++++..+.. .
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 134443 4445677888999999999999998876 4553 456666788889999999999999998754 4
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 011323 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (488)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 440 (488)
||...-..-+.-..+++..++|.++.....+.|.
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5655544666777789999999999998888765
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=1.3e-10 Score=96.88 Aligned_cols=233 Identities=14% Similarity=0.071 Sum_probs=181.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcch-HHH
Q 011323 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGA 239 (488)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~ 239 (488)
|-.--+.+.++|.+.|.+.+|.+-++.-... .|-+.||..|-+.|.+..+...|+.++.+-... .|..+| ...
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g 295 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLG 295 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhh
Confidence 3344467788888888888888888887766 677788888888888888888888888887653 344344 345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
+.+.+-..++.++|.++++...+.. +.+......+...|.-.++++.|+..++++.+.|+. +...|..+.-+|.-.++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 6677778888888888888887765 556677777777888888888888888888888887 77888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 320 VEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
++-++.-|.+....-..|+ ..+|-.+.......||+..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 8888888887765433333 4567777777888889888888888887665 456778888888888889999998888
Q ss_pred HHHHh
Q 011323 398 SDMKS 402 (488)
Q Consensus 398 ~~~~~ 402 (488)
.....
T Consensus 453 ~~A~s 457 (478)
T KOG1129|consen 453 NAAKS 457 (478)
T ss_pred HHhhh
Confidence 88765
No 69
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=3.1e-10 Score=106.79 Aligned_cols=334 Identities=13% Similarity=0.094 Sum_probs=211.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
.||..+|..+|.-||..|+.+.|- +|..|.-...+.+...|+.++......++.+.+. .|...||..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 588899999999999999999888 8888888777788888999998888888877665 6788899999
Q ss_pred HHHHHhcCCHHH---HHHHHHHHH----hCCCCCCHhH--------------HHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 011323 169 IDGCAKAGQVAK---AFGAYGIMR----SKNVKPDRVV--------------FNALITACGQSGAVDRAFDVLAEMNAEV 227 (488)
Q Consensus 169 ~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~--------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 227 (488)
..+|...||... +.+.+..+. ..|+-....- -...+....-.|.++.+++++..+....
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999988643 333222221 1222111111 1223333445566777777766654321
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH
Q 011323 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307 (488)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 307 (488)
+. . .....++-+.... ....++........-.+++.+|.+++.+-...|+.+.|..++.+|.+.|++.+..-|
T Consensus 170 ~~-~----p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 170 WN-A----PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cc-c----hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 11 1 1112233333222 233333333333222688999999999999999999999999999999998888877
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 011323 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (488)
Q Consensus 308 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 387 (488)
..++-+ .++...+..+++-|...|+.|+..|+...+..+..+|....+ +.+ .+....+++-+..-.-.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~tAavrsaa~r 310 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFTAAVRSAACR 310 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhhHHHHHHHhc
Confidence 777755 889999999999999999999999999998888886652222 222 23333333322222222
Q ss_pred CChhHHHHHHH------------HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc--CCCCcH-HHHHHHHH
Q 011323 388 DQLPKTMEVLS------------DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNL-VMFKCIIG 452 (488)
Q Consensus 388 ~~~~~a~~~~~------------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~-~~~~~li~ 452 (488)
| ..|.+.++ +..-.|+.....+|.... -....|+-++..++...+..- .+.++. ..|..++.
T Consensus 311 g--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 311 G--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred c--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 2 22222222 222234444444444333 344478888888888776532 222322 23445555
Q ss_pred HHhh
Q 011323 453 MCSR 456 (488)
Q Consensus 453 ~~~~ 456 (488)
-|.+
T Consensus 388 qyFr 391 (1088)
T KOG4318|consen 388 QYFR 391 (1088)
T ss_pred HHHH
Confidence 5444
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=8.8e-08 Score=81.34 Aligned_cols=392 Identities=14% Similarity=0.091 Sum_probs=207.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCCh
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 108 (488)
..-++.+.++..|+.+++--...+- .....+...++..+-..|++++|...|+.+. .++...+-.+...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4556678888888888887665442 2233555556666777788888888887664 34555555555555556777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
.+|.++-... +.++-.-..++...-+.++-++-..+.+.+.. +..---+|.......-.+++|+++|.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777765442 23344444555555566776666655555542 2223334444444455677888888877
Q ss_pred HhCCCCCCHhHHHHH-HHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHhc--CC---------------
Q 011323 189 RSKNVKPDRVVFNAL-ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANA--GQ--------------- 249 (488)
Q Consensus 189 ~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--~~--------------- 249 (488)
... .|.-...|.- .-+|.+..-++-+.++++-..++ .|| ....+..+....+. |+
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q----~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ----FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh----CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 755 3455555543 34556666666666666666553 233 22233222222221 11
Q ss_pred ------------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 250 ------------------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (488)
Q Consensus 250 ------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 311 (488)
-+.|++++--+.+. -+.....++-.|.+.++..+|..+.+++... .|-......++
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv 325 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV 325 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH
Confidence 11222222111111 1234445566678888888888887765432 23333333332
Q ss_pred HHH-----HhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 312 DFA-----GHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (488)
Q Consensus 312 ~~~-----~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (488)
.+. .......-|.+.|+..-..+..-| ..---++...+.-..+++++...+..+...-...|...+| +..+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHH
Confidence 221 111224445555555444332211 1112233334444456666666666665543333333333 566777
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011323 386 DGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (488)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 451 (488)
..|.+.+|.++|-.+....++ |..+| +.|.+.|.+.++++-|..++ .+.+-..+..+.-.+|
T Consensus 405 atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlI 467 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLI 467 (557)
T ss_pred HhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHH
Confidence 777777777777666543333 33444 34456666777776665444 4444444444444444
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.2e-07 Score=80.48 Aligned_cols=393 Identities=10% Similarity=0.072 Sum_probs=228.6
Q ss_pred hHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhc
Q 011323 28 QLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (488)
Q Consensus 28 ~~~~~~~l~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (488)
.+..|-... +.|++++|+..|.-+.+.+- .+..+...++...--.|.+.+|..+.++.++ ++-.-..++..-.+.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHh
Confidence 455554444 89999999999998887653 3333333344444445889999999888763 344555566666677
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-IDGCAKAGQVAKAFGA 184 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~ 184 (488)
++-++-..+.+.+... ...-..|.......-.+.+|++++.+.+.. .|+-...|.- .-+|.+..-++-+.++
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 7777666666655432 122333444444455677888888888765 4454444443 3455666666666666
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHc--cCCH---------------------------------HHHHHHHHHHhhCCCC
Q 011323 185 YGIMRSKNVKPDRVVFNALITACGQ--SGAV---------------------------------DRAFDVLAEMNAEVHP 229 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~---------------------------------~~a~~~~~~~~~~~~~ 229 (488)
+.--.+. ++.++...|.......+ .|+. +.|++++-.+...
T Consensus 208 l~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--- 283 (557)
T KOG3785|consen 208 LKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--- 283 (557)
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---
Confidence 6665544 23334444433332222 1221 1122221111110
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-------CChHHHHHHHHHHHhCCCCC
Q 011323 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-------GDWEFACSVYDDMTKKGVIP 302 (488)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~~~~~~~ 302 (488)
-|. .-..++-.|.+.+++.+|..+.+.+. +.++.-|-.-.-.+... .+..-|.+.|.-.-..+..-
T Consensus 284 -IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 284 -IPE--ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred -ChH--hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 111 12233445778899999988877664 22333332222222222 23455666666555554433
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HH
Q 011323 303 DEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN-AL 380 (488)
Q Consensus 303 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l 380 (488)
|.. .-.++...+.-..++++.+-++..+..--...|...+ .+..+++..|.+.+|+++|-++..-.+ .|..+|. .|
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~L 434 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSML 434 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHH
Confidence 322 2334445555566788888888877765333344444 467888899999999999988765443 3455555 45
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 011323 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (488)
Q Consensus 381 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (488)
.++|.+.+.++-|..++-.+.. +.+. .....+..-|.+.+.+--|.+.|+.+... .|+...|.
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 6788899999888776655432 2233 23445567788888888888888877764 35544443
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=7.3e-12 Score=77.32 Aligned_cols=49 Identities=31% Similarity=0.634 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011323 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (488)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (488)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555544
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=9.2e-12 Score=76.86 Aligned_cols=49 Identities=37% Similarity=0.661 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011323 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (488)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 208 (488)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=8.9e-08 Score=89.52 Aligned_cols=440 Identities=13% Similarity=0.003 Sum_probs=231.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHH
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERK---GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVC 102 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 102 (488)
.-.-..++-+.+.+++.-..--+.+. +...++..++..+.-.....|+++.+.+.|++..+ .....|..+...+
T Consensus 288 lli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~ 367 (799)
T KOG4162|consen 288 LLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSY 367 (799)
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHH
Confidence 33344555556666655544333221 22346677777777777788888888888887653 3455777777778
Q ss_pred HhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH-cCCHhHHHHHHHHHHHc--C--CCCCHHHHHHHHHHHHhc-
Q 011323 103 ASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAK-SGKVDAMFEVFHEMVNA--G--IEPNVHTYGALIDGCAKA- 175 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~- 175 (488)
...|.-..|+.+++......-.| +...+...-..|.+ .+.+++++++-.+.... + -......|..+.-+|...
T Consensus 368 saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A 447 (799)
T KOG4162|consen 368 SAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA 447 (799)
T ss_pred HHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh
Confidence 88888888888887655332123 33444444444433 46677777666665551 1 123445555555555421
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH
Q 011323 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (488)
Q Consensus 176 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (488)
....++++.+++..+.+ +.|+.....+.--|+..++++.|.+...+...-+ -..+...|..+.-.+.
T Consensus 448 ~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlS 524 (799)
T KOG4162|consen 448 RQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLS 524 (799)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHh
Confidence 22567778888887664 3344444445555677788888888888877642 2345567777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-----------------h----CC-----
Q 011323 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT-----------------K----KG----- 299 (488)
Q Consensus 246 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------~----~~----- 299 (488)
..+++.+|+.+.+.....- ..|-.....-+..-...++.+++......+. . .|
T Consensus 525 a~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 525 AQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred hhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCc
Confidence 8888888888887665431 1111111111111111223222222211110 0 00
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011323 300 --VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG------IISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (488)
Q Consensus 300 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 371 (488)
..-...++..+.......+....-...+...... ..|+ ...|......+.+.+..++|.-.+.+..... +
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~ 681 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-P 681 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccccCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-h
Confidence 0001122222222211111110000001111111 0111 1233444555566666666666665555432 3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHH--HHHHHHHcCCCCcHHHHH
Q 011323 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLM--LLSQAKEDGVIPNLVMFK 448 (488)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~ 448 (488)
.....|......+...|...+|.+.|..... +.|+ +....++...+...|+..-+.. ++..+.+.+.. +...|-
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~ 758 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWY 758 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHH
Confidence 3445555555566666677777776666655 3444 4556666666666666655555 66666654321 333454
Q ss_pred HHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 449 CIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 449 ~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
.+...+.. +.++|.+.+.+..++++..|.
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 45444443 566677777766666655554
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=1.5e-08 Score=93.53 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 011323 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----NV- 193 (488)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 193 (488)
..+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++.+|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555667777777777777777665543 21 12222 2233555666666666666666665432 10
Q ss_pred -CCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 194 -KPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 194 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
+.-..+++.|..+|.+.|++++|...+++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 111334555555666666666655555443
No 76
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=3e-07 Score=83.51 Aligned_cols=393 Identities=11% Similarity=0.067 Sum_probs=222.0
Q ss_pred ccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 011323 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (488)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 100 (488)
+|++...----.-+||+.++|++|+.+.+.-.... ..+... ..-+.+..+.+..++|+..++-..+.+..+...-..
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~-fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFF-FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQ 118 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhh-HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHH
Confidence 35555555555667889999999996665332111 112221 222333456688999999999666667777777788
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhc
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKL--YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA---LIDGCAKA 175 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~ 175 (488)
.+.+.+++++|+++|+.+.+.+. ++... -..++.+-.. -.+. +.+... ..| ..+|.. ..-.++..
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~----l~~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAAA----LQVQ-LLQSVP---EVP-EDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh----hhHH-HHHhcc---CCC-cchHHHHHHHHHHHHhc
Confidence 89999999999999999987653 22211 1111111100 0111 122221 122 223332 23445667
Q ss_pred CCHHHHHHHHHHHHhCC-------------CCCCHhH-HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH----
Q 011323 176 GQVAKAFGAYGIMRSKN-------------VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI---- 237 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~-------------~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---- 237 (488)
|++.+|+++++...+.+ +.-...+ --.+.-.+-..|+.++|.+++..+.... .+|....
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~Av~~ 265 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSLAVAV 265 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHHHHHh
Confidence 88888888887772211 0001111 1123334556788888888888777642 2222111
Q ss_pred HHHHHHHHhcCC-----------------HHHHHHHH--------------------------HHHHhc-CCCCCHHHHH
Q 011323 238 GALMKACANAGQ-----------------VDRAREVY--------------------------KMIHKY-NIKGTPEVYT 273 (488)
Q Consensus 238 ~~l~~~~~~~~~-----------------~~~a~~~~--------------------------~~~~~~-~~~~~~~~~~ 273 (488)
|.++ +.....+ .+..+.-+ +..... +..| ...+.
T Consensus 266 NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p-~~~~~ 343 (652)
T KOG2376|consen 266 NNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSP-ESLFP 343 (652)
T ss_pred cchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCc-hHHHH
Confidence 1111 0000000 00000000 000000 1112 23333
Q ss_pred HHHHHHHc--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCccHHHHH
Q 011323 274 IAINCCSQ--TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYS 343 (488)
Q Consensus 274 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 343 (488)
.++....+ ......+.+++...-+....-...+.-..+......|+++.|.+++. .+.+.+.. +.+..
T Consensus 344 ~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~ 421 (652)
T KOG2376|consen 344 ILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVG 421 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHH
Confidence 44433322 22466777777776665443335566777788889999999999999 55554444 45556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 344 SLMGACSNAKNWQKALELYEHMKSI--KLKPT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
.++..+.+.++-+.|..++...... .-.+. ..++..++..-.+.|+-++|..+++++.+.. ++|..+...++.
T Consensus 422 aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~ 500 (652)
T KOG2376|consen 422 AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVT 500 (652)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHH
Confidence 6777778888777777777766521 00111 2233334444557899999999999999863 788999999999
Q ss_pred HHhhcCCHHHHHHHHHHH
Q 011323 418 ACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~ 435 (488)
+|++. +++.|..+-+.+
T Consensus 501 a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 501 AYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhc-CHHHHHHHhhcC
Confidence 99876 567777665543
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.25 E-value=1.7e-08 Score=80.54 Aligned_cols=197 Identities=11% Similarity=0.052 Sum_probs=133.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (488)
...+.-.|...|+...|..-+++..+.+ +.+..++..+...|.+.|..+.|.+-|++.....+. +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3445556777777777777777777765 556667777777777777777777777777665444 55566666667777
Q ss_pred cCCHHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 011323 317 AGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
.|++++|...|++...... .-...+|..+.-+..+.|+.+.|...|++..+.. +......-.+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777777777665421 2224566666666677777777777777777654 3344556666777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+++.....+ .++..+....|+.-.+.|+.+.+-++=.++.+
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777766654 37777777777777777777777666655554
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=1.1e-08 Score=90.38 Aligned_cols=95 Identities=13% Similarity=-0.028 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.+.|+...+.. +-+..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3334444444555555555555544432 2334455555555555555555555555554432 1123444444444555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 011323 175 AGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~ 191 (488)
.|++++|.+.|+.....
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555554443
No 79
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.23 E-value=2.1e-06 Score=78.94 Aligned_cols=326 Identities=14% Similarity=0.121 Sum_probs=188.8
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhCC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 011323 65 ARFFNVCKSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (488)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (488)
...++.+..+|++-..+..|+++. .....+|...+......+-++-++.++++..+. ++..-+..+..+++
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 344556677788888888887653 245567888888888888888999999888753 34446677888889
Q ss_pred cCCHhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCC--HhHHHHHHHHHH
Q 011323 140 SGKVDAMFEVFHEMVNA------GIEPNVHTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPD--RVVFNALITACG 208 (488)
Q Consensus 140 ~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 208 (488)
.+++++|.+.+...... ..+.+...|.-+....+++-+.- .+..+++.+... -+| ...|++|..-|.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYI 259 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHH
Confidence 99999999888877642 12445566777666666544332 344455555543 344 356899999999
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhcCC-
Q 011323 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----------------G------QVDRAREVYKMIHKYNI- 265 (488)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~~- 265 (488)
+.|.++.|..+|++....... ..-|..+...|+.- + +++-...-|+.+.....
T Consensus 260 r~g~~ekarDvyeeai~~v~t----vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMT----VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HhhhhHHHHHHHHHHHHhhee----hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999998775222 22233333333221 1 12223333333332210
Q ss_pred ----------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 266 ----------KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP------DEVFLSALIDFAGHAGKVEAAFEILQE 329 (488)
Q Consensus 266 ----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 329 (488)
+.+...+..-+. ...|+..+...++.+..+. +.| -...|..+...|-..|+++.|..+|.+
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 111111211111 1234555556666665543 222 123466677777777777777777777
Q ss_pred HHHCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHHcCCC
Q 011323 330 AKNQGISVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLK-----------------PTVSTMNALITALCDGDQ 389 (488)
Q Consensus 330 ~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~ 389 (488)
..+...+-- ..+|-.....-.+..+++.|.++.+......-. .+...|..++...-..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 766543211 234444445555666777777776665432100 012234444444445566
Q ss_pred hhHHHHHHHHHHhC
Q 011323 390 LPKTMEVLSDMKSL 403 (488)
Q Consensus 390 ~~~a~~~~~~~~~~ 403 (488)
++....+++++.+.
T Consensus 493 festk~vYdriidL 506 (835)
T KOG2047|consen 493 FESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=2.9e-09 Score=98.25 Aligned_cols=239 Identities=13% Similarity=0.072 Sum_probs=144.8
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC----------CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 011323 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----------PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEA----- 121 (488)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 121 (488)
|....+...+...|..+|+++.|..+++.... +.+. ..+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 33334444466666666777777776665431 2222 2233556677777777777777766531
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 011323 122 G--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSK- 191 (488)
Q Consensus 122 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 191 (488)
| .+.-..+++.|..+|.+.|++++|...++...+. |. .|.+ ..++.+...++..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 1 1112346667777777888877777666654431 21 2222 23556666777777888777777765432
Q ss_pred --CCCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC----CCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 192 --NVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEV----HPVDP-DHITIGALMKACANAGQVDRAREVYKMI 260 (488)
Q Consensus 192 --~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 260 (488)
-+.+ -..+++.+...|...|++++|.++++.+.... ....+ ....++.+...|.+.+.++.|.++|...
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1111 23567777888888888888888877765431 11122 2345677777777777777777777644
Q ss_pred Hhc------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011323 261 HKY------NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (488)
Q Consensus 261 ~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 296 (488)
... +.+....+|..|...|...|+++.|.++.+...
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 322 222235677888888888888888888877655
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=4.3e-08 Score=82.83 Aligned_cols=301 Identities=11% Similarity=0.075 Sum_probs=149.5
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHH---HHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHH
Q 011323 60 DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLIT 135 (488)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 135 (488)
+..-|..++.-....|++.+|+..|..+.+.|+..|.++.+ .|...|+...|+.=+....+. +||-.. -..-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 33444444444444455555555555444444444444332 344445555555444444432 333221 111222
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCC------------CCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011323 136 TCAKSGKVDAMFEVFHEMVNAGIE------------PNVHT--YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (488)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (488)
.+.+.|.+++|..-|+.+++.... +.... ....+..+...|+...|+.....+.+.. +-|...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 334455555555555554443110 00000 1122333344555555555555555442 33444444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHH---
Q 011323 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE----VYTI--- 274 (488)
Q Consensus 202 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~--- 274 (488)
.-..+|...|++..|+.-++...+- ...+..++--+-..+...|+.+.++......++.+ |+-. .|..
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askL---s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKL---SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHH
Confidence 4555555555555555444443321 11122233333444445555555555554444432 2211 1110
Q ss_pred ------HHHHHHccCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 011323 275 ------AINCCSQTGDWEFACSVYDDMTKKGVIPDE---VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (488)
Q Consensus 275 ------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (488)
-+......++|.++.+-.+...+..+.... ..+..+-.++...|++.+|++.-.++.+.. +.|..++.--
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dR 347 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHH
Confidence 022344567777777777777765443222 234445556677788888888888877753 3347777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 346 MGACSNAKNWQKALELYEHMKSIK 369 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~ 369 (488)
..+|.-..+++.|+.-|+...+.+
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888888888888888887765
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.20 E-value=8e-08 Score=76.81 Aligned_cols=198 Identities=16% Similarity=0.073 Sum_probs=117.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 209 (488)
...|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3345556666666666666666666552 2234566666666666666666666666666553 3345556666666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011323 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (488)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 289 (488)
.|.+++|.+.|++.... +....-..+|..+.-+..+.|+.+.|...|+...+.. +..+.+...+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 66666666666666553 1111123355555555566666666666666666654 334455556666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 332 (488)
..++.....+. ++..+....|..-...|+.+.+-++=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666554 5666666666666666666666555555544
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=2.3e-06 Score=80.39 Aligned_cols=397 Identities=14% Similarity=0.046 Sum_probs=241.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHh-cC
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-----PTLSTFNMLMSVCAS-SK 106 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~-~~ 106 (488)
-++..-|+++.+.+.|++....-+.. ...+ ..+.-.+...|.-..|..+++...+ +++..+-..-..|.+ .+
T Consensus 331 ~al~~~g~f~~lae~fE~~~~~~~~~-~e~w-~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 331 FALSRCGQFEVLAEQFEQALPFSFGE-HERW-YQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhh-HHHH-HHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchh
Confidence 34457788888888888876543222 2222 2233334444556777887765432 234455544555554 36
Q ss_pred ChhHHHHHHHHHHH--cCC--CCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 107 DSEGAFQVLRLVQE--AGL--KADCKLYTTLITTCAKSG-----------KVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 107 ~~~~a~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
..+++++...+... .+. ......|..+.-+|...- ...++++.+++..+.+. -|......+.--
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~dp~~if~lalq 487 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TDPLVIFYLALQ 487 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 77777777766655 111 223455666665655331 23456777777776542 233333334445
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHH
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (488)
|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..... ...|......-+..-...++.+
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E---~~~N~~l~~~~~~i~~~~~~~e 564 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE---FGDNHVLMDGKIHIELTFNDRE 564 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---hhhhhhhchhhhhhhhhcccHH
Confidence 6777888889888888887755668888888888888888899999888887764 1223333333444455678888
Q ss_pred HHHHHHHHHHhcCC-CCCH-HHHH--HHHH----HHHccCChHHHHHHHHH-----------------HHhCCCCC--C-
Q 011323 252 RAREVYKMIHKYNI-KGTP-EVYT--IAIN----CCSQTGDWEFACSVYDD-----------------MTKKGVIP--D- 303 (488)
Q Consensus 252 ~a~~~~~~~~~~~~-~~~~-~~~~--~l~~----~~~~~~~~~~a~~~~~~-----------------~~~~~~~~--~- 303 (488)
++......+...-- .+.. .+.. .... .....++..++.+..+. +......| +
T Consensus 565 ~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~ 644 (799)
T KOG4162|consen 565 EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS 644 (799)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc
Confidence 88887776654200 0000 0000 0000 00000111111111111 11111111 2
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011323 304 -----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (488)
Q Consensus 304 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (488)
...|......+.+.+..++|...+.+..... +.....|......+...|.+++|...|......+ +.++.+..
T Consensus 645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~ 722 (799)
T KOG4162|consen 645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMT 722 (799)
T ss_pred hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHH
Confidence 1234455566777788888887777777653 4556777777777888888888888888877665 44567778
Q ss_pred HHHHHHHcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 379 ALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
++...+.+.|+..-|.. ++.++.+.+ +.++..|..+...+.+.|+.+.|.+.|....+.
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 88888888888777777 888888754 456888888888898999998888888776654
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.9e-07 Score=82.72 Aligned_cols=386 Identities=12% Similarity=0.036 Sum_probs=206.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHHhcCCh
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~ 108 (488)
-|..+..|+++.|+.+|-+.+..+ |.+.++++.-...+.+.|++++|++--.+.. .| -...|.-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 356678999999999999998887 7798999888899999999999998876654 23 345899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh---HHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc-------
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEVFHEMVNAG---IEPNVHTYGALIDGCAKA------- 175 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~------- 175 (488)
++|+.-|.+-++.. +.+...++-+..++....... .--.++..+.... ......+|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999888764 446667777777761110000 0001111111000 001111222222222110
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHH--HHHhhCCCCC---------CCCcchHHHHHHHH
Q 011323 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL--AEMNAEVHPV---------DPDHITIGALMKAC 244 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~--~~~~~~~~~~---------~~~~~~~~~l~~~~ 244 (488)
...+...+..-.+...+.. .....|....+-..- .......+.+ ..-..-...+.+..
T Consensus 166 l~d~r~m~a~~~l~~~~~~-----------~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDEL-----------LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred cccHHHHHHHHHHhcCccc-----------cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 0011111111111110000 000000000000000 0000000000 00011234455666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHhc
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA-------LIDFAGHA 317 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~ 317 (488)
.+..++..+.+-+....... .+..-++....+|...|.+..+...-.+..+.|.. ...-|+. +..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 66777777777777776654 34555666677777777777776666665555432 2222222 33355566
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011323 318 GKVEAAFEILQEAKNQGISVGIIS-------------------------YSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 372 (488)
++++.++..|.+.......|+... ...-...+.+.|++..|.+.|.+++... +.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 777777777777654433322211 1111233445666666666666666555 45
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
|...|..-..+|.+.|.+..|++-.+...+. .|+ ...|..=..++....+++.|.+.|.+.++
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666666666666655553 232 33444444445555566666666666555
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=1.3e-07 Score=83.63 Aligned_cols=218 Identities=12% Similarity=0.013 Sum_probs=131.4
Q ss_pred CChhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAG-LKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 182 (488)
+..+.++.-+.++.... ..| ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 112 23457777777888888888888888887763 335678888888888888888888
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
..|++..+.. +-+..++..+..++...|++++|.+.|+..... .|+..........+...+++++|...|.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD----DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8888887653 234566777777777888888888888887764 34332222222334456678888888865443
Q ss_pred cCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC---C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---V--IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
.. .++... ..+. ....|+...+ ..+..+.+.. + .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWG-WNIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccH-HHHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22 222111 1222 2234444433 2333333211 0 00 22456666666666777777777777666654
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=1.5e-06 Score=73.80 Aligned_cols=300 Identities=13% Similarity=0.095 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY-GALID 170 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 170 (488)
+.--.-+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.-+.+.++. +||-..- -.-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 3334446677888899999999999888642 333445555567888999999999999999876 6765332 23345
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH----hH------------HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPDR----VV------------FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 234 (488)
.+.++|.++.|..-|+...... |+. .. ....+..+...|+...|+.....+... .+-|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi---~~Wda 189 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI---QPWDA 189 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc---Ccchh
Confidence 6789999999999999998763 321 11 122344566789999999999988864 23466
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH----HHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF----LSAL 310 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l 310 (488)
..+..-..+|...|++..|+.-++...+.. ..+...+.-+-..+...|+.+.++...++..+.+ ||... |..+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHH
Confidence 677788889999999999999998888765 4566777777888889999999999888887753 44321 2111
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011323 311 ---------IDFAGHAGKVEAAFEILQEAKNQGISVGII---SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (488)
Q Consensus 311 ---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (488)
+......+++.++++-.+...+........ .+..+-.++...|++.+|++...++.+.. +.|..++.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHH
Confidence 223445678888888888877765432233 34445566677889999999999988754 44588888
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhC
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKSL 403 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~~ 403 (488)
--..+|.-...++.|+.-|+...+.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 8888999889999999999988774
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.15 E-value=9.1e-07 Score=81.45 Aligned_cols=304 Identities=15% Similarity=0.034 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH---H
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA---L 203 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 203 (488)
.|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 444445555555555555555544443211 1121 111122233445666777777666665542 223333331 1
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (488)
.......+..+.+.+.+... .+..|+. .....+...+...|++++|...++...+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11111233444444444331 1122332 223344456667777777777777777655 44556666777777777
Q ss_pred CChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CccHHHH-H--HHHHHHHhcCCH
Q 011323 283 GDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKNW 355 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~ 355 (488)
|++++|...+.+...... .|+. ..+..+...+...|++++|..++++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 777777777777665422 1222 2344566677777778888777777653322 1111111 1 222333333432
Q ss_pred HHHHHH---HHHHHhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHhhcC
Q 011323 356 QKALEL---YEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC------P--NTITYSILLVACERKD 423 (488)
Q Consensus 356 ~~a~~~---~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------p--~~~~~~~l~~~~~~~g 423 (488)
..+.+. ........ .............++...|+.++|..+++.+...... . ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 11111110 0111122234666777888899999998887653211 0 1122223334556889
Q ss_pred CHHHHHHHHHHHHHc
Q 011323 424 DVEVGLMLLSQAKED 438 (488)
Q Consensus 424 ~~~~a~~~~~~~~~~ 438 (488)
+.++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988877653
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.5e-07 Score=79.40 Aligned_cols=271 Identities=8% Similarity=-0.051 Sum_probs=136.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
+.|+.....+...+...|+.++|+..|+.....+ +-+........-.+.+.|+.+....+...+.... +.+...|..-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 3455556666666666666666666666555332 1122222222333345566666555555554331 1233333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (488)
.......++++.|+.+-++.++.. +.+...+..-...+...|+.++|.-.|+....- .+.+...|..++..|...|
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---ap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML---APYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc---chhhHHHHHHHHHHHHhhc
Confidence 444444556666666666555442 223333333334555566666666666655432 1233456666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHH-HH-HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 249 QVDRAREVYKMIHKYNIKGTPEVYTIAI-NC-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
.+.+|...-...... ++.+..+.+.+. .. +.....-++|.+++++-.+..+. -......+...+...|..+.++.+
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHH
Confidence 666665554433332 133344444442 11 22222334565655554443211 223344555556666666666666
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (488)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 369 (488)
++..... .||....+.|...+...+.+++|.+.|....+.+
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 6665542 4556666666666666666666666666665544
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.14 E-value=4.8e-07 Score=83.28 Aligned_cols=154 Identities=17% Similarity=0.067 Sum_probs=74.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 011323 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAG 176 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 176 (488)
+...|++++|.+.++...+.. |.+...+.. ...+.. .+....+.+.+... .+..|+ ......+...+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC
Confidence 445566666666666655542 333333332 112222 23333333333331 111222 223334445556666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc--chHHHHHHHHHhcCCHHHHH
Q 011323 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH--ITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~ 254 (488)
++++|...+++..+.. +.+...+..+..++...|++++|...+++....... .++. ..|..+...+...|++++|.
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-SSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-CcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 6666666666666553 333445555566666666666666666665543111 1221 12334555566666666666
Q ss_pred HHHHHHH
Q 011323 255 EVYKMIH 261 (488)
Q Consensus 255 ~~~~~~~ 261 (488)
.+++...
T Consensus 207 ~~~~~~~ 213 (355)
T cd05804 207 AIYDTHI 213 (355)
T ss_pred HHHHHHh
Confidence 6666653
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.11 E-value=3.9e-06 Score=87.56 Aligned_cols=369 Identities=9% Similarity=-0.049 Sum_probs=223.9
Q ss_pred HhhhHHHHHHHHHhhhCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 011323 71 CKSQKAIKEAFRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (488)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (488)
+...|++.+|...+.......... ...........|+++.+..+++.+.......+..........+...|+++++..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 344455555555555444322111 111223445567777777776655221111222233444556677899999999
Q ss_pred HHHHHHHcC--C----CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hHHHHHHHHHHccCCHHHH
Q 011323 149 VFHEMVNAG--I----EPNV--HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRA 216 (488)
Q Consensus 149 ~~~~~~~~~--~----~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a 216 (488)
.+......- . .+.. .....+...+...|+++.|...+++....-...+. ...+.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 988775431 0 1111 12223334556799999999999987753111121 2345556667789999999
Q ss_pred HHHHHHHhhCCCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CHHHHHHHHHHHHccCChH
Q 011323 217 FDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKY----NIKG---TPEVYTIAINCCSQTGDWE 286 (488)
Q Consensus 217 ~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~ 286 (488)
...+.+.........+ ...++..+...+...|+++.|...++..... +... ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999887643111111 1224455666788899999999998876542 2111 1233445566777889999
Q ss_pred HHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCccHHH----HHHHHHHHHhcCCHH
Q 011323 287 FACSVYDDMTKK--GVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIIS----YSSLMGACSNAKNWQ 356 (488)
Q Consensus 287 ~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~g~~~ 356 (488)
+|...+.+.... ...+ ....+..+...+...|+++.|...+....... ....... ....+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 999998886542 1112 23344456667788999999999988875421 1111111 111224455688999
Q ss_pred HHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCCHHHH
Q 011323 357 KALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVG 428 (488)
Q Consensus 357 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a 428 (488)
.|...+........... ...+..+..++...|++++|...+++.... |..+. ..+...+..++.+.|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99998877654221111 111345667788999999999999987642 33322 34566777888999999999
Q ss_pred HHHHHHHHHcC
Q 011323 429 LMLLSQAKEDG 439 (488)
Q Consensus 429 ~~~~~~~~~~~ 439 (488)
...+.++.+..
T Consensus 751 ~~~L~~Al~la 761 (903)
T PRK04841 751 QRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=8.7e-09 Score=89.68 Aligned_cols=256 Identities=14% Similarity=0.159 Sum_probs=144.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCC
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (488)
.+..+....-.|++..++.-++ ..... .+........+.+.+...|+.+.++.-.....+|.......+...+...++
T Consensus 4 eLf~vrn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 4 ELFTVRNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp TTHHHHHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccc
Confidence 3456667777888888887666 22222 122334445566667777777777666655556666666555555544344
Q ss_pred hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
-+.++.-++........+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455554444333222222 2222222234455567777777776542 356666667777778888888888888
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
.|.+.+ .| .+...+..++.. .+.+.+|..+|+++... ..++..+.+.+..++...|++++|..++.....
T Consensus 156 ~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 156 NMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 877653 23 333344444332 23577777777777653 334555666666677777777777777777665
Q ss_pred cCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHhC
Q 011323 263 YNIKGTPEVYTIAINCCSQTGDW-EFACSVYDDMTKK 298 (488)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 298 (488)
.+ +.++.+...++.+....|+. +.+.+.+.++...
T Consensus 230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 54 44566666666666666666 5566666666554
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2.8e-06 Score=70.78 Aligned_cols=190 Identities=13% Similarity=0.076 Sum_probs=136.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHH-HHHHHHhc
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNM-LMSVCASS 105 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-l~~~~~~~ 105 (488)
..++-.||+..++..|++++..-.++. |.+..-.+.++..+....++..|..-|++.. -|...-|.. -...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 345667899999999999999888876 6778888888888888899999999998875 355555543 24566778
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITT--CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 183 (488)
+.+..|+.+...|... ++...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8999999998877642 222222222222 235678888888888876432 45555555566678999999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 011323 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (488)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 227 (488)
-|+...+.+--.....|+..+ +..+.|+++.|++...++...+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhh
Confidence 999887754333456666544 5557889999999998887753
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=2.3e-06 Score=77.11 Aligned_cols=384 Identities=15% Similarity=0.104 Sum_probs=224.7
Q ss_pred HHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 011323 69 NVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (488)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (488)
....+.|+++.|+.+|-... ++|...|..-..+|+..|++++|++=-.+-.+.+ |.-...|.....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHH
Confidence 34456688888888886543 5577778777888888888888877666665543 2335678888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHhHHHHHH-----HHHHccCCHHHHHHH
Q 011323 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF-GAYGIMRSKNVKPDRVVFNALI-----TACGQSGAVDRAFDV 219 (488)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~g~~~~a~~~ 219 (488)
|...|.+-++.. +.+...++-+..++. .+.+. +.|. ++..|..+. +.+...-.+.. +
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~---~ 151 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVK---I 151 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHH---H
Confidence 888888877662 234556666666651 11111 1110 111111111 01111111111 1
Q ss_pred HHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHH-HHHH------------HHHHhcC-----------CCCCHHHHHHH
Q 011323 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVY------------KMIHKYN-----------IKGTPEVYTIA 275 (488)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~------------~~~~~~~-----------~~~~~~~~~~l 275 (488)
+..+......+..... ...++.+.......+.- ...- ....... ...-..-...+
T Consensus 152 l~~~~~~p~~l~~~l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 152 LEIIQKNPTSLKLYLN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred HHHhhcCcHhhhcccc-cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 1111110000000000 00111111110000000 0000 0000000 00011235667
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHH-------HHHHH
Q 011323 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-------SLMGA 348 (488)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~ 348 (488)
.+...+..++..+.+-+....+.. -+..-++....+|...|.+..+...-....+.|-. ...-|+ .+..+
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhh
Confidence 888888899999999999988875 36666777778899999988888777777666532 222233 33446
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------------------------HHHHHHHHcCCChhHHHHHHHHHHhC
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTM-------------------------NALITALCDGDQLPKTMEVLSDMKSL 403 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~ 403 (488)
|.+.++++.++..|.+.......|+...= ..-...+.+.|++..|++.+.+++..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 67788899999999887654434433221 11133466789999999999999987
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH---HHHHHHHHHhhcHHHHHHHHHHhhhccCCCCc
Q 011323 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV---MFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~ 477 (488)
. +-|...|..-.-+|.+.|.+..|+.-.+...+. .|+.. +....+.-..++|++|.+.++..+..+|.+..
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 4 567889999999999999999999998888874 34432 22222222234899999999999888876543
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=4.5e-08 Score=85.29 Aligned_cols=249 Identities=15% Similarity=0.114 Sum_probs=138.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHH
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (488)
+.-.|.+..++.-.+ .....-..+......+.+++...|+.+.++ .++... -.|.......+...+...++-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~---~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS---SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT---SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC---CChhHHHHHHHHHHHhCccchH
Confidence 344566776665554 222211122334445667777777665433 333322 1444444444443333323444
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 252 RAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 330 (488)
.+..-++........ .++.........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444333222222 22333333344566677788777776532 25666677777788888888888888887
Q ss_pred HHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 011323 331 KNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (488)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 406 (488)
.+.+ .| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 7643 22 233333333322 33577888888887654 35677778888888888888888888888876543 3
Q ss_pred CCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHc
Q 011323 407 PNTITYSILLVACERKDDV-EVGLMLLSQAKED 438 (488)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 438 (488)
-++.+...++......|+. +.+.+++.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3566777777777777776 6677777777763
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=8.1e-06 Score=77.37 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=97.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 011323 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
-+..|.+++|..+|.+..+.+ ++-.++.+.|.+++|+++-+.-..-. ..+|-.....+-..++.+.|++
T Consensus 810 AieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHH
Confidence 347788888888888776543 45566777788888887776433211 2344444555555666766666
Q ss_pred HHHHHH----------HcC---------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 114 VLRLVQ----------EAG---------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 114 ~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
.|++.. ... -..|...|......+-..|+.+.|+.+|..... |.++++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 665421 110 011223333444444445555555555554432 4455566666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
.|+.++|-++-++- -|......+.+.|-..|++.+|...|.+..
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777776665432 255666678888888888888888877654
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=2.3e-06 Score=71.21 Aligned_cols=84 Identities=13% Similarity=0.029 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 254 (488)
.+++..+..++++....| +..+.+...-...+.|+++.|.+-|....+- .|..| ...|+..+ +..+.|+++.|+
T Consensus 125 e~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqv-sGyqp-llAYniAL-aHy~~~qyasAL 198 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQV-SGYQP-LLAYNLAL-AHYSSRQYASAL 198 (459)
T ss_pred cccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhh-cCCCc-hhHHHHHH-HHHhhhhHHHHH
Confidence 444444544444443222 2223333333334455555555555554432 23322 23333333 233345555555
Q ss_pred HHHHHHHhcC
Q 011323 255 EVYKMIHKYN 264 (488)
Q Consensus 255 ~~~~~~~~~~ 264 (488)
+....+...|
T Consensus 199 k~iSEIieRG 208 (459)
T KOG4340|consen 199 KHISEIIERG 208 (459)
T ss_pred HHHHHHHHhh
Confidence 5555555444
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=1.1e-05 Score=84.37 Aligned_cols=368 Identities=10% Similarity=-0.002 Sum_probs=225.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC----CCHHHHHHHHHHHHhcCCh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 108 (488)
..+...|++.+|...+... +..+................|+.+.+...++.++. .++.........+...|++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 3345677877777544433 21111112222223344455777777777776641 2233333445556778999
Q ss_pred hHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcC
Q 011323 109 EGAFQVLRLVQEAGL------KAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAG 176 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 176 (488)
+++...+......-- .+. ......+...+...|++++|...++.....-...+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 999999987754210 111 122233345566789999999999987763111121 24455666778899
Q ss_pred CHHHHHHHHHHHHhCCC---CCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC--CCC--C-CcchHHHHHHHHHh
Q 011323 177 QVAKAFGAYGIMRSKNV---KPD--RVVFNALITACGQSGAVDRAFDVLAEMNAEVH--PVD--P-DHITIGALMKACAN 246 (488)
Q Consensus 177 ~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~--~-~~~~~~~l~~~~~~ 246 (488)
++++|...+++.....- .+. ..++..+...+...|++++|...+++...... +.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999999988764311 111 23445566778889999999999887654211 111 1 12234445566777
Q ss_pred cCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHHh
Q 011323 247 AGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPDEV--FL--SALIDFAGH 316 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~ 316 (488)
.|++++|...+....... ..+ ....+..+...+...|+++.|...+....... ...... .. ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 899999999988765431 111 23345556677888999999999988875421 111111 10 112244556
Q ss_pred cCCHHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCC
Q 011323 317 AGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGD 388 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~ 388 (488)
.|+.+.|...+........... ...+..+..++...|+.++|...+++.... +..++ ..+...+..++.+.|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 7899999998877554221111 112456677888999999999999887642 22221 235566677888999
Q ss_pred ChhHHHHHHHHHHhC
Q 011323 389 QLPKTMEVLSDMKSL 403 (488)
Q Consensus 389 ~~~~a~~~~~~~~~~ 403 (488)
+.++|...+.+..+.
T Consensus 746 ~~~~A~~~L~~Al~l 760 (903)
T PRK04841 746 RKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.7e-07 Score=84.98 Aligned_cols=220 Identities=13% Similarity=0.064 Sum_probs=173.1
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011323 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (488)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (488)
-+.+.|++.+|.-.|+....+. +-+...|..|.......++-..|+..+.+..+.+ +.+..+...|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 3567899999999999988762 2345688888888888999999999999999887 66888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcC
Q 011323 286 EFACSVYDDMTKKGVIPDEVFLSALI-----------DFAGHAGKVEAAFEILQEAKN-QGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 286 ~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 353 (488)
..|...++.-+...++ |..+. ........+....++|-++.. .+..+|+.+...|.-.|--.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999887654321 11111 011122234445555655544 444588899999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHH
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLL 432 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 432 (488)
++++|.+.|+.+.... +-|..+||-|...++...+.++|+..|++.++ +.|+ +....-|.-+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 9999999999998865 56788999999999999999999999999998 5787 456667888999999999999988
Q ss_pred HHHHH
Q 011323 433 SQAKE 437 (488)
Q Consensus 433 ~~~~~ 437 (488)
=.++.
T Consensus 522 L~AL~ 526 (579)
T KOG1125|consen 522 LEALS 526 (579)
T ss_pred HHHHH
Confidence 76553
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=5e-05 Score=72.29 Aligned_cols=137 Identities=17% Similarity=0.200 Sum_probs=80.9
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC----------------------
Q 011323 33 NRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---------------------- 89 (488)
Q Consensus 33 ~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------- 89 (488)
|.|. ..|.+++|.++.+.--+.+ -.-++...+......++.+.|++.|++...
T Consensus 833 NKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 833 NKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHhcccHHHHHHHHhhcccee----hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 4343 5789999998877544332 233455567777788899999999987542
Q ss_pred -CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 90 -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 90 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
.|...|.--...+-..|+.+.|+.++..... |-.+++..+-.|+.++|-++-++-. |......|
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhl 973 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHL 973 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHH
Confidence 2333333334444456666666666655442 3344555555666666665554422 44445555
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 011323 169 IDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~ 188 (488)
.+.|-..|++.+|...|.+.
T Consensus 974 aR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 66666666666666555543
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=2.5e-06 Score=79.67 Aligned_cols=238 Identities=11% Similarity=0.080 Sum_probs=183.9
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 011323 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (488)
Q Consensus 194 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (488)
+|--..-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+.....+ -+|++..|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc 461 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC 461 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH
Confidence 3444444566778888999999999998874 566788899999999999999888777 378889999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 011323 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (488)
.+.+......-+++|.++.+....+ .-..+.......++++++.+.|+.-.+.+ +....+|-.+..+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 9999888888889999988875443 11112222234789999999998877765 456788888888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (488)
+++.|.+.|....... +.+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999999887764 4567899999999999999999999999998876 5566677777778889999999999998
Q ss_pred HHHHcC-CCCcHHHHHHHHHHH
Q 011323 434 QAKEDG-VIPNLVMFKCIIGMC 454 (488)
Q Consensus 434 ~~~~~~-~~~~~~~~~~li~~~ 454 (488)
++.+.. ...|..+...++...
T Consensus 612 rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHhhhhcccchhhHHHHHHH
Confidence 887551 112444444444443
No 101
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=7.6e-06 Score=72.47 Aligned_cols=122 Identities=9% Similarity=-0.002 Sum_probs=52.8
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
+...+..++|+.+..++... .|+. .+|+....++...| ++++++..++.+...+ +.+..+|+.....+.+.|.
T Consensus 47 l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 33344555555555555442 2322 12333333333334 3455555555554443 2333344433333333333
Q ss_pred h--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 285 W--EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 285 ~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
. +++..+++++.+.... +..+|.....++...|+++++++.+.++.+.+
T Consensus 122 ~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 122 DAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 1 3344444444444333 44444444444444455555555555554443
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.84 E-value=2.7e-05 Score=73.08 Aligned_cols=171 Identities=18% Similarity=0.230 Sum_probs=113.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
.+.+.....+|.+|+.+++.+.+... -..-|..+...|...|+++.|.++|-+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 44555667778888888887776543 23456677788888888888888875431 24556778888888
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011323 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 399 (488)
++.|.++-.+.. |.......|-.-..-+-+.|++.+|.+++-.+. .|+. .|..|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 888887765543 334455666666666777888888877765443 3543 35667778888877777765
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 400 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
-.- ..-..|...+..-+...|+.+.|.+.|-++
T Consensus 876 ~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 876 HHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 321 112456667777777888888887776433
No 103
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=5e-06 Score=83.15 Aligned_cols=233 Identities=12% Similarity=0.042 Sum_probs=152.4
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 011323 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (488)
Q Consensus 195 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 272 (488)
-+...|...|......++.++|.++.++....-.... --...|.++++.-..-|.-+...++|+++.+.. ..-.+|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3456677777777777888888888777765310000 112356666666666677777777887777653 223567
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHh
Q 011323 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSN 351 (488)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 351 (488)
..|...|.+.+.+++|.++++.|.++-- -....|...+..+.+..+-+.|..++.+..+.-.+ -......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 7777788888888888888888776522 35566777777777777777788887777654211 134455555666677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHH
Q 011323 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGL 429 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~ 429 (488)
.|+.+.+..+|+...... +.-...|+.++..-.++|+.+.+..+|++....++.|- -..|...+.---..|+-..+.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 788888888887776543 44567788888888888888888888888877766654 234555555445555544443
Q ss_pred HH
Q 011323 430 ML 431 (488)
Q Consensus 430 ~~ 431 (488)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
No 104
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=0.00011 Score=71.52 Aligned_cols=185 Identities=16% Similarity=0.198 Sum_probs=88.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011323 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (488)
+..++-+++|..+|+..- .+....+.|+. ..++.++|.+.-++.. .+..|..+..+-.+.|...+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 334444555555554432 23333333332 2244455544444332 334566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 261 (488)
++-|-+. .|+..|..++....+.|.+++..+.+.-..+.. -.|. .=..++-+|++.+++.+..+.+
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~--~E~~--id~eLi~AyAkt~rl~elE~fi---- 1189 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV--REPY--IDSELIFAYAKTNRLTELEEFI---- 1189 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh--cCcc--chHHHHHHHHHhchHHHHHHHh----
Confidence 5544321 245556666666666666666666555444431 1222 2234555566665554443332
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
.-|+......+.+-|...+.++.|.-+|... .-|..+...+...|++..|.+.
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 1234444444555555555555555444322 2244444445555555555433
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=0.00011 Score=66.74 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHH
Q 011323 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEVLS 398 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 398 (488)
.+....++.++...-...-.-+|-.++....+...++.|..+|.++.+.+..+ .+.++++++.-|| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44555555555543222223456666666677777788888888887665555 5666677776665 467777888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhh--cHHHHHHHHHHhhhccC
Q 011323 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL--VMFKCIIGMCSR--RYEKARTLNEHVLSFNS 473 (488)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~--~~~~a~~~~~~~~~~~~ 473 (488)
--... +..++.-....+.-+.+.++-..+..+|++....++.|+. .+|..+|+--+. ++..+.++.++....-|
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 65543 2334455556667777777777788888887777555444 467777754332 56666666666554444
No 106
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.78 E-value=5.4e-05 Score=71.16 Aligned_cols=297 Identities=14% Similarity=0.156 Sum_probs=172.2
Q ss_pred cCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 011323 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (488)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 101 (488)
..+-...+..+..+++.|.+..|......-... ..+..+...+.....+..-++.|-.+|+++..++.. +..
T Consensus 612 k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l---~~de~il~~ia~alik~elydkagdlfeki~d~dka-----le~ 683 (1636)
T KOG3616|consen 612 KESDGDGLAAIQLYIKAGKPAKAARAALNDEEL---LADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKA-----LEC 683 (1636)
T ss_pred ccccCccHHHHHHHHHcCCchHHHHhhcCHHHh---hccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHH-----HHH
Confidence 334455677788888888888877665322111 223334444555555656677777777776543322 111
Q ss_pred HHhcCChhHHHHHHHHHH----------------HcCCCCC--------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 011323 102 CASSKDSEGAFQVLRLVQ----------------EAGLKAD--------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~----------------~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (488)
+-+-+-+.+|+++-+... ..| ..| .......+.+......+.+|+.+++.+...
T Consensus 684 fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdq- 761 (1636)
T KOG3616|consen 684 FKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQ- 761 (1636)
T ss_pred HHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhh-
Confidence 111122223322221110 000 001 011222344455566777777787777655
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH
Q 011323 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (488)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (488)
..-..-|..+...|+..|+++.|.++|.+. ..++..|..|.+.|.|+.|.++-.+... .......|
T Consensus 762 -k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~----~e~t~~~y 827 (1636)
T KOG3616|consen 762 -KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG----PEATISLY 827 (1636)
T ss_pred -ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC----chhHHHHH
Confidence 223445667778888888888888887643 2345667778888888888888777642 23344456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011323 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (488)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (488)
.+-..-.-..|.+.+|.+++-.+. .|+ ..|..|-+.|..+..+++..+-.... -..|...+..-+...
T Consensus 828 iakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~ 895 (1636)
T KOG3616|consen 828 IAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAE 895 (1636)
T ss_pred HHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhc
Confidence 666666677778877777765443 222 24567777788777777665532221 234555666777788
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 363 (488)
|++..|.+-|-+.. -|.+-+.+|-..+.|++|.++-+
T Consensus 896 g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred cChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 88888887765433 24455666777777777766543
No 107
>PLN02789 farnesyltranstransferase
Probab=98.76 E-value=3.4e-05 Score=68.38 Aligned_cols=211 Identities=11% Similarity=0.005 Sum_probs=119.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
+-.++...++.++|+.+.+.+++.+ +-+..+|+..-.++...| +++++++.++.+.+.. +.+..+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 3344555667777777777777653 334455665555555665 4677777777777653 334455665544444555
Q ss_pred CH--HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc---CC--
Q 011323 177 QV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQ-- 249 (488)
Q Consensus 177 ~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-- 249 (488)
+. ++++..++++.+.. +-+..+|+...-++...|+++++++.++++.... ..+..+|+....++.+. |.
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhcccccccc
Confidence 42 55666776666554 3456667766666667777777777777776642 22344555544444333 21
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011323 250 --VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (488)
Q Consensus 250 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (488)
.+........+.... +.+...|+.+...+... +...+|.+.+.+....++. +...+..++..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 234555554555443 44555666665555552 2334466666665554332 55566666666654
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=3.9e-06 Score=76.40 Aligned_cols=222 Identities=14% Similarity=0.123 Sum_probs=118.6
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH
Q 011323 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (488)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 216 (488)
+.+.|++.+|.-.|+...+.. +-+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 456677777777777766653 3356677777777777777777777777777653 34566666666777777777777
Q ss_pred HHHHHHHhhCCCCCC------CCcchHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011323 217 FDVLAEMNAEVHPVD------PDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (488)
Q Consensus 217 ~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 289 (488)
++.|+.-....+... ++...-.. ..+.....+....++|- .....+...|+.++..|.-.|.-.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 777766544311000 00000000 01111112223333332 2233333355555665555566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
..|+..+...+. |...|+.|...++...+.++|+..|.+..+.. |. +.+...|.-.|...|.+++|.+.|-.+
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 666665554433 55556666666666666666666666655532 22 223333444555666666665555444
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=5.7e-05 Score=62.21 Aligned_cols=256 Identities=12% Similarity=0.125 Sum_probs=153.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcC
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (488)
..+..++...=.|+|..++...+..... +.....-..+.+.+...|.......-.+....+.......+.......+
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELES 86 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcc
Confidence 3445555555678888777766654433 1233333445555555555444333333333333334444444444444
Q ss_pred ChhHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 107 DSEGA-FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (488)
Q Consensus 107 ~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 185 (488)
+.+.- .++.+++.......+......-...|.+.|++++|++...... +......=+..+.+..+++-|.+.+
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 3444555554444444444455567788888888888776632 3333333345566778888888888
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 186 GIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 186 ~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 261 (488)
++|.+.. +..|.+.|..++.+ .+.+.+|.-+|+++..+ ..|+..+.+....++...|++++|..+++...
T Consensus 161 k~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 161 KKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888653 55666666666654 35577888888888753 46666677777777888888888888888887
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHhC
Q 011323 262 KYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKK 298 (488)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 298 (488)
... ..++.+...++.+-...|...+ ..+.+.++...
T Consensus 235 ~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 235 DKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred hcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 766 4556666666666555665533 44555555554
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.73 E-value=0.0001 Score=71.79 Aligned_cols=182 Identities=11% Similarity=0.034 Sum_probs=129.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhcCChhHHHHH
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQV 114 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 114 (488)
+.+...|+..|-+..+.+ +.-...+..++.+++...+...|.+-|.++.+ .+...+......|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 455788888888888877 55566667788999888899999999988764 4556778888999999999999988
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 115 LRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 115 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
.-..-+.. +.- ...|....-.|.+.++...+..-|+...+.. +.|...|..+..+|...|++..|.+.|.+....
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 33322221 111 1223334455667788888888888887764 447788999999999999999999999887755
Q ss_pred CCCCH-hHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 193 VKPDR-VVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 193 ~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
.|+. ..---.....+..|.+.+++..+..+..
T Consensus 626 -rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 -RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3332 1111222334567888888887776654
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.71 E-value=6.9e-06 Score=67.49 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=100.7
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011323 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (488)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (488)
|.+..+ ......+...|+-+....+..... +.+....+..+....+.|++..|+..+++..... ++|..+|+.+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 444444 444445555555555555555432 3444555556667777777777777777776543 56677777777
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH
Q 011323 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (488)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 214 (488)
-+|.+.|+++.|..-|.+..+.. .-+....+.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 77777777777777777766652 2245556666666677777777777777766553 335566666666667777777
Q ss_pred HHHHHHHH
Q 011323 215 RAFDVLAE 222 (488)
Q Consensus 215 ~a~~~~~~ 222 (488)
+|..+...
T Consensus 220 ~A~~i~~~ 227 (257)
T COG5010 220 EAEDIAVQ 227 (257)
T ss_pred HHHhhccc
Confidence 77666544
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=2.8e-08 Score=54.84 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555544444
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.70 E-value=3.7e-06 Score=72.25 Aligned_cols=187 Identities=11% Similarity=0.013 Sum_probs=125.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC-HH
Q 011323 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PN-VH 163 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~ 163 (488)
......+..+...+...|++++|...++.+.... +.+. .++..+..++...|++++|...++.+.+.... |. ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677777888889999999999999887653 2222 46677888889999999999999998876321 11 12
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc
Q 011323 164 TYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (488)
Q Consensus 164 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 234 (488)
++..+..++... |+++.|.+.|+.+... .|+. ..+..+..... ... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~~--------- 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLAG--------- 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHHH---------
Confidence 455555555544 6788888888888766 3332 22222211100 000 0000
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
....+...+.+.|++++|...++.+..... +.....+..+..++.+.|++++|...++.+...
T Consensus 168 -~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 -KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112455678889999999999988877532 223578888899999999999999988887765
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=3e-05 Score=77.82 Aligned_cols=205 Identities=12% Similarity=0.054 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKP---DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (488)
...|-..|......++.++|.++.++.... ++.- -...|.++++.-...|.-+...++|+++.+- -.....|
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy----cd~~~V~ 1533 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY----CDAYTVH 1533 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh----cchHHHH
Confidence 344555555555555555555555554432 1100 1223444444444445555555555555442 1112244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 011323 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGH 316 (488)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (488)
..|...|.+.+..++|.++++.|.+.- .....+|...+..+.+.++-++|..++.+..+.-+.- ......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 555555555555555555555555432 2344455555555555555555555555544421110 12223333344445
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011323 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 372 (488)
.|+.+.+..+|+...... +-....|+..++.-.++|+.+.++.+|+++...++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 566666666665555442 2234556666666666666666666666665554443
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.68 E-value=1.3e-05 Score=66.02 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCC--hhHH
Q 011323 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQ--LPKT 393 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 393 (488)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455666666676666654 5567777778788888888888888888777765 44666777776653 56565 4788
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.+++++..+.+ +-+...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888877652 335667777777778888888888888887765
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=6.8e-05 Score=67.32 Aligned_cols=162 Identities=13% Similarity=0.071 Sum_probs=125.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 011323 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (488)
-..-.+...|+++.|+..++.+...-+. |........+.+.+.++..+|.+.++.+.... +......-.+..+|.+.|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcC
Confidence 3344566778999999999998876443 77777788889999999999999999998864 223666777888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (488)
++.+|+.+++...... +.|+..|..|..+|...|+..++..-..+ .+...|+++.|..++.
T Consensus 389 ~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 389 KPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLM 449 (484)
T ss_pred ChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHH
Confidence 9999999999887654 67889999999999999988887765544 3456889999999998
Q ss_pred HHHHc--CCCCcHHHHHHHHHHHhh
Q 011323 434 QAKED--GVIPNLVMFKCIIGMCSR 456 (488)
Q Consensus 434 ~~~~~--~~~~~~~~~~~li~~~~~ 456 (488)
...+. ...|+..-+...|.....
T Consensus 450 ~A~~~~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 450 RASQQVKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHH
Confidence 88776 334555556666665443
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=3e-06 Score=79.18 Aligned_cols=238 Identities=13% Similarity=0.063 Sum_probs=182.5
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011323 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (488)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 204 (488)
|--..-..+...+.+.|-...|..+|+++. .|.-++.+|...|+..+|..+..+..+. +||...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333344567778888899999999998875 3567788899999999999998888874 78999999999
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
.......-+++|.++.+..... +-..+.....+.++++++.+.|+.-...+ +....+|.....+..+.++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 9888888889999998876542 11122222345789999999998877765 5567888888888899999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 364 (488)
+..|.+.|..-..-.+. +...|+.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.++.|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999887775433 66789999999999999999999999999887 44567777888888899999999999988
Q ss_pred HHhCC-CCCCHHHHHHHHHHHH
Q 011323 365 MKSIK-LKPTVSTMNALITALC 385 (488)
Q Consensus 365 ~~~~~-~~~~~~~~~~l~~~~~ 385 (488)
+.... ...|..+...++....
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHH
Confidence 86421 1124444444444433
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.67 E-value=0.00029 Score=64.12 Aligned_cols=409 Identities=11% Similarity=0.127 Sum_probs=238.5
Q ss_pred CchhHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHH
Q 011323 25 VSEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM 99 (488)
Q Consensus 25 ~~~~~~~~~~l~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~ 99 (488)
.+.++.+|..|+ ++..++++++.|+++... +|...-.....+..-...++++...++|.++. .-+...|...+
T Consensus 16 nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl 93 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYL 93 (656)
T ss_pred CCccHHHHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 456778888888 455999999999999764 35655555556666666789999999998875 35677777777
Q ss_pred HHHHh-cCChh----HHHHHHHHHH-HcCCCCC-HHHHHHHHHHH---------HHcCCHhHHHHHHHHHHHcCCCC---
Q 011323 100 SVCAS-SKDSE----GAFQVLRLVQ-EAGLKAD-CKLYTTLITTC---------AKSGKVDAMFEVFHEMVNAGIEP--- 160 (488)
Q Consensus 100 ~~~~~-~~~~~----~a~~~~~~~~-~~~~~~~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~~~~--- 160 (488)
...-+ .++.. ...+.|+... +.|+.+- ...|+..+..+ ....+.+...+++++++...+.-
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 65433 23332 3334444443 4454432 23455544432 33445666778888877532111
Q ss_pred ---CHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHhH---------------HHHHHHHHHccC--
Q 011323 161 ---NVHTYGALIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSG-- 211 (488)
Q Consensus 161 ---~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~ll~~~~~~g-- 211 (488)
|-..|..=|+.. -+...+..|.++++++.. .|+.....+ |..+|.--...+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 111222111111 123456677777777643 233221111 333333211111
Q ss_pred ----C--HHHHHHHHHHHhhCCCCCCCCcch-H----HHHHHHHHhcCCH-------HHHHHHHHHHHhcCCCCCHHHHH
Q 011323 212 ----A--VDRAFDVLAEMNAEVHPVDPDHIT-I----GALMKACANAGQV-------DRAREVYKMIHKYNIKGTPEVYT 273 (488)
Q Consensus 212 ----~--~~~a~~~~~~~~~~~~~~~~~~~~-~----~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~ 273 (488)
. .....-.+++...- .+..|+... + ...-+.+...|+. +++..+++.....-...+..+|.
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred cccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111222222211 122232111 0 1111233334443 34444444443322222333343
Q ss_pred HHHHHHHcc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHH
Q 011323 274 IAINCCSQT---GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (488)
Q Consensus 274 ~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 349 (488)
.+...--.. ...+....+++++...-..--..+|...+....+..-+..|..+|.++.+.+..+ ++.+.++++..|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 333221111 1355666777776654222233567788888888888999999999999887666 677888888876
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHH
Q 011323 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEV 427 (488)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 427 (488)
| .++.+-|.++|+-=...- ..++.--...+.-+...++-..|..+|++....+++|+ ...|..++.--..-|+...
T Consensus 413 c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 578899999998655432 23344445677788888998999999999998766666 5789999999999999999
Q ss_pred HHHHHHHHHHc
Q 011323 428 GLMLLSQAKED 438 (488)
Q Consensus 428 a~~~~~~~~~~ 438 (488)
+.++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 99988876643
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.66 E-value=8.1e-06 Score=70.11 Aligned_cols=183 Identities=14% Similarity=0.078 Sum_probs=129.4
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-Hh-
Q 011323 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V---HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RV- 198 (488)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~- 198 (488)
.....+..+...+...|++++|...|+++... .|+ . ..+..+..++...|++++|...++++.+.. |+ ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 35667778888899999999999999998876 333 2 467778889999999999999999998763 32 22
Q ss_pred --HHHHHHHHHHcc--------CCHHHHHHHHHHHhhCCCCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011323 199 --VFNALITACGQS--------GAVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (488)
Q Consensus 199 --~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 267 (488)
++..+..++... |+.++|.+.++.+... .|+.. .+..+..... ... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~~~~----~~~------~~------- 165 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----YPNSEYAPDAKKRMDY----LRN------RL------- 165 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----CCCChhHHHHHHHHHH----HHH------HH-------
Confidence 445555555543 6788899999888764 34322 2211111100 000 00
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011323 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (488)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 333 (488)
......+...+.+.|++.+|...+......... | ....+..+..++.+.|++++|..+++.+...
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011235667799999999999999998876432 2 4578889999999999999999999988765
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=1.6e-05 Score=65.45 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--HHHHH
Q 011323 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAF 324 (488)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a~ 324 (488)
++.+++...++.....+ +.+...|..+...|...|+++.|...|++..+.... +...+..+..+ +...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33444444444444433 344455555555555555555555555555444332 34444444443 233343 24555
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
+++++..+.+ +.+...+..+...+.+.|++++|...|+++.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555443 223444444445555555555555555555443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.65 E-value=1.4e-05 Score=65.66 Aligned_cols=157 Identities=14% Similarity=0.057 Sum_probs=89.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 011323 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (488)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (488)
..+-..+...|+-+....+.......... |.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44444555555555555555544332222 44444455666666666666666666666543 55666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 011323 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (488)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 432 (488)
|+++.|..-|.+..+.. ..++..++.+...+.-.|+.+.|..++......+ .-|...-..+..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666665543 2344555566666666666666666666655432 224444555555566666666666655
Q ss_pred H
Q 011323 433 S 433 (488)
Q Consensus 433 ~ 433 (488)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 122
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=4.8e-08 Score=53.88 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
|+.||..||++++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 123
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.00067 Score=66.48 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=125.6
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011323 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (488)
Q Consensus 196 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (488)
.+..|..+..+-.+.|.+.+|++-|-+. .|...|..++....+.|.+++..+.+...++....| .+=+.+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eL 1172 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSEL 1172 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHH
Confidence 3467888888888888888888776543 233478888888888888888888888777765444 344567
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 011323 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (488)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (488)
+-+|++.++..+.++++ .-|+......+.+-|...|.++.|.-+|.. ..-|..|...+...|++
T Consensus 1173 i~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHH
Confidence 77888888877665544 235777777788888888888888777653 34456666667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 011323 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (488)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (488)
+.|.+.-++. .+..+|-.+-.+|...+.+.-| +|...++-....-..-++.-|...|-+++.+.+++
T Consensus 1237 Q~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1237 QGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 7766554432 2445555555555544433222 12222222233334444555555555555554443
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=4.8e-05 Score=62.63 Aligned_cols=249 Identities=13% Similarity=0.044 Sum_probs=142.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCC
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (488)
+-+.-.|.+..++..-...... +.+...-..+.++|...|.+.....- +.. +-.|.......+......-++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~---~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKE---GKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccc---ccCChHHHHHHHHHHhhCcch
Confidence 3444456666666554444332 13344444556666666665443322 221 112222222222222223333
Q ss_pred HHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 250 VDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (488)
Q Consensus 250 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 328 (488)
.+.-. .+.+.+.......+......-...|++.|++++|++..... . +......=+..+.+..+.+.|...++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 33444444433334344444455677888888888777651 1 23333333455667777888888888
Q ss_pred HHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 011323 329 EAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
.|.+-. +..+.+.|..++.+ .+....|.-+|++|.+. .+|+..+.+....++...|++++|..+++..+...
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 887643 45666666666543 34577888888888764 36888888888888888888888888888887653
Q ss_pred CCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHH
Q 011323 405 LCPNTITYSILLVACERKDDV-EVGLMLLSQAKE 437 (488)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 437 (488)
.-++.+...++..-...|.. +...+.+.++..
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 44566666666666666654 344555566554
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=4.5e-05 Score=75.63 Aligned_cols=144 Identities=11% Similarity=0.006 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCh
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 108 (488)
...++.+...|++++|.++.++..+.. |....++...+.++.+.++..++..+ .++.......++
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~ 99 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKW 99 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccch
Confidence 333444448999999999999888765 66666666666666666665444333 334444444455
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
.-...+...|... .-+...+..+..+|-+.|+.+++.++|+++++.. +-|..+.|.+.-.|... ++++|.+++.+.
T Consensus 100 ~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 100 AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 3344444444442 3344567777777777888888888888877765 44677777777777777 777777777766
Q ss_pred HhC
Q 011323 189 RSK 191 (488)
Q Consensus 189 ~~~ 191 (488)
...
T Consensus 176 V~~ 178 (906)
T PRK14720 176 IYR 178 (906)
T ss_pred HHH
Confidence 544
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.58 E-value=5.4e-06 Score=64.49 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344455555666666666666655543 3455566666666666666666666666666543 3345555666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 011323 175 AGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~ 191 (488)
.|++++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665554
No 127
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.56 E-value=0.00034 Score=68.32 Aligned_cols=127 Identities=10% Similarity=-0.017 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHH
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA 103 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 103 (488)
+--.+..++....+.+.|..+.-...+.........-....+-++...++...|+..|+... +.|..+|..+..+|.
T Consensus 528 aaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~ 607 (1238)
T KOG1127|consen 528 AAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP 607 (1238)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 33344455556677777777744443332110111111114445666777888888887654 456678888999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011323 104 SSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVN 155 (488)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (488)
++|++..|+++|.+.... .|+.. .--.....-+..|.+.++.+.+.....
T Consensus 608 ~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 608 ESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999888764 34322 222223334567888888888877654
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=1.2e-05 Score=62.51 Aligned_cols=90 Identities=8% Similarity=-0.049 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 011323 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 425 (488)
...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+...... +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 334444444444444444444333 2334444444444444444444444444444321 22334444444444444444
Q ss_pred HHHHHHHHHHHH
Q 011323 426 EVGLMLLSQAKE 437 (488)
Q Consensus 426 ~~a~~~~~~~~~ 437 (488)
++|+..|+...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=0.0001 Score=72.26 Aligned_cols=182 Identities=10% Similarity=0.052 Sum_probs=134.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011323 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (488)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (488)
..+...+..|..+..+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|...+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 4456678888888888999999999999888875 556777888888899999999999999998887655 67777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 011323 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (488)
Q Consensus 311 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 390 (488)
..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+...+.. .+...-|+.++. +.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HH
Confidence 888888999999999999988844 4457888888888999999999999999887654 344555555443 23
Q ss_pred hHHHHHHHHHHhC----CCCCCHHHHHHHHHHHhhc
Q 011323 391 PKTMEVLSDMKSL----GLCPNTITYSILLVACERK 422 (488)
Q Consensus 391 ~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~ 422 (488)
..-..+++++.-. |.+.........+.-+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 3344556665432 2333344555555555543
No 130
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.49 E-value=0.0015 Score=63.27 Aligned_cols=205 Identities=11% Similarity=0.085 Sum_probs=103.9
Q ss_pred ccccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHH
Q 011323 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFN 96 (488)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~ 96 (488)
+.+|+...+.+...-.+++.|+.++|..+++.....+ +.+..+...+-.++...++.++|..+|+++.. |+.....
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~ 114 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLY 114 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHH
Confidence 4455555555555555667777777777776665444 44666666677777777777777777777653 4444444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CC---------HhHHHHHHHHHHHcC-CCCCHHHH
Q 011323 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-GK---------VDAMFEVFHEMVNAG-IEPNVHTY 165 (488)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~a~~~~~~~~~~~-~~~~~~~~ 165 (488)
.+..+|.+-+++.+-.+.--++-+. .+-+...+=.+++...+. .. ..-|.+.++.+.+.+ ..-+..-.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~ 193 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI 193 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH
Confidence 5555666666555443333333221 223333333333333322 11 112444445544432 11111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 011323 166 GALIDGCAKAGQVAKAFGAYG-IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
..-...+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 122223334566777777763 2222222223333344455555666666666666665553
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=0.00026 Score=70.44 Aligned_cols=150 Identities=9% Similarity=0.011 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
+.+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++...+.-+ . +
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 4556677777777777788888888777655542 22233344444455555554444333 2 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (488)
+.......++.-+..++..|...+ -+...+..+..+|-+.|+.+++..+++++..-. +.|..+.+.+...|...
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-
Confidence 222222333333333333343321 233455555666666666666666666665531 22344555555555555
Q ss_pred CHHHHHHHHHHHHh
Q 011323 249 QVDRAREVYKMIHK 262 (488)
Q Consensus 249 ~~~~a~~~~~~~~~ 262 (488)
++++|.+++.++..
T Consensus 164 dL~KA~~m~~KAV~ 177 (906)
T PRK14720 164 DKEKAITYLKKAIY 177 (906)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666665555543
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.47 E-value=1.1e-05 Score=62.50 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445555666667777777777777766554 3456666666677777777777777777666542 4445666666667
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCcHHHH
Q 011323 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (488)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 447 (488)
+...|++++|...|++..+. .|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 77777777777777766663 3444433
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=4.1e-05 Score=75.03 Aligned_cols=182 Identities=9% Similarity=0.091 Sum_probs=141.1
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 011323 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (488)
Q Consensus 192 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 270 (488)
..+.+...+..|.....+.|..++|..+++...+- .|+. .....+..++.+.+++++|...++...... +.+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~ 155 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAR 155 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHH
Confidence 34667889999999999999999999999999864 5664 456677888999999999999999999987 67888
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (488)
....+..++.+.|++++|..+|+++...+.. +..++..+..++...|+.++|...|+...+.. .+....|+..+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~--- 230 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV--- 230 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH---
Confidence 9999999999999999999999999985443 57889999999999999999999999998764 445566666553
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHc
Q 011323 351 NAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCD 386 (488)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~ 386 (488)
++..-..+++++.-. |..........++..|.+
T Consensus 231 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 231 ---DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred ---HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 333344555555422 222233344455555544
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=0.00038 Score=62.73 Aligned_cols=141 Identities=14% Similarity=0.057 Sum_probs=89.6
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (488)
.-.+...|+.++|+..++.+... .|+ ...+......+...++..+|.+.++++.... +......-.+..++.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA----QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhc
Confidence 33445667777777777777664 333 3334445566777777777777777777654 33355566667777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 362 (488)
|++.+|+.+++........ |...|..|..+|...|+..++..-.. +.|...|+++.|...+
T Consensus 388 g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l 448 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFL 448 (484)
T ss_pred CChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHH
Confidence 7777777777776665443 66777777777777777666554332 3455566777777666
Q ss_pred HHHHhC
Q 011323 363 EHMKSI 368 (488)
Q Consensus 363 ~~~~~~ 368 (488)
....+.
T Consensus 449 ~~A~~~ 454 (484)
T COG4783 449 MRASQQ 454 (484)
T ss_pred HHHHHh
Confidence 666543
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00033 Score=57.47 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHhC---C-CCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcCC
Q 011323 176 GQVAKAFGAYGIMRSK---N-VKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQ 249 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 249 (488)
.+.++..+++.++... | ..++.. .|..++-+....|+.+.|..+++++..+. |.. ..-..-...+-..|+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF----PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC----CCChhHHHHHHHHHHHhhc
Confidence 3455555555555422 2 233332 23444455556666666666666665542 221 111111122344566
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (488)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 329 (488)
+++|.++++.+.+.+ +.|..++.--+...-..|+.-+|++-+.+..+.-+ .|...|.-+...|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 666666666666655 44555555555555555665566666666555422 3666666666666666666666666666
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 011323 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSI 368 (488)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 368 (488)
+.-.. |.++..+..+...+...| +.+.+.+.|.+..+.
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 66543 333444444444443333 344555666665543
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=2.1e-05 Score=60.86 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (488)
Q Consensus 305 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (488)
.....+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555566666666666666665543 3355566666666666666666666666665544 34455555566666
Q ss_pred HcCCChhHHHHHHHHHHh
Q 011323 385 CDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~ 402 (488)
...|++++|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666665
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00062 Score=55.90 Aligned_cols=152 Identities=15% Similarity=0.127 Sum_probs=65.7
Q ss_pred ChhHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011323 107 DSEGAFQVLRLVQE---AG-LKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 107 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (488)
++++.++++..+.. .| ..++.. .|..++-+....|+.+-|...++.+...- +-+...-..-...+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 44555555544432 12 223332 23444444455555555555555554431 11111111111222334555555
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 261 (488)
+++|+.+.+.. +.|..++---+...-..|..-+|++-+.+.... +..|...|.-+...|...|++++|.-.++++.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 55555555443 333333333333333344444444444444432 23344455555555555555555555555444
Q ss_pred hc
Q 011323 262 KY 263 (488)
Q Consensus 262 ~~ 263 (488)
-.
T Consensus 182 l~ 183 (289)
T KOG3060|consen 182 LI 183 (289)
T ss_pred Hc
Confidence 43
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=0.0002 Score=56.03 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV--STMNALIT 382 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 382 (488)
|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+.+......|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33334333 3566666666666666543111 1223333445666677777777777776654422221 12333556
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
.+...|++++|+..++..... ......+......+.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666777777777777553322 233445556667777777777777777653
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=6.2e-05 Score=68.17 Aligned_cols=129 Identities=9% Similarity=0.046 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...-..++..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+......-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556677788888899999999999998764 44 34457888888888899999999988653 446777777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
.+.+.++.+.|+.+.+++.... +-+-.+|..|..+|...|+++.|+..++.+..
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8899999999999999998773 33456999999999999999999999988754
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.16 E-value=0.00027 Score=55.25 Aligned_cols=115 Identities=12% Similarity=0.065 Sum_probs=49.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVA 179 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 179 (488)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+........|+. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 444555555555554432 222 122223334444555555555555555544311111 12233444455555555
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 011323 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (488)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 222 (488)
+|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555442222 11223333444445555555555555443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=0.00013 Score=66.15 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=51.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++.+..+.... +...+..-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 3333444444555555555444432 11 2223344444444444444444444433222 33333333444444444
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
++.|+.+.+++.+.. +.+..+|..|..+|.+.|+++.|...++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 444444444444432 222334444444444444444444444433
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=6.6e-06 Score=46.14 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (488)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=6.1e-06 Score=46.31 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 011323 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (488)
Q Consensus 376 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 408 (488)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.08 E-value=7e-06 Score=45.66 Aligned_cols=32 Identities=44% Similarity=0.756 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (488)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 145
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.06 E-value=9.6e-05 Score=67.27 Aligned_cols=120 Identities=11% Similarity=0.148 Sum_probs=68.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 011323 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 413 (488)
+.+...+..++..+....+.+.+..++-+.+.. ....-..|..++++.|.+.|..++++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555566555555566666666555532 111112333466666666666666666666666666666666666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011323 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 414 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (488)
.|+..+.+.|++..|.++...|...+...+..++...+..|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 666666666666666666666655555445555544444443
No 146
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.03 E-value=1.1e-05 Score=44.77 Aligned_cols=32 Identities=44% Similarity=0.756 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 442 (488)
+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.03 E-value=0.00013 Score=51.71 Aligned_cols=76 Identities=17% Similarity=0.408 Sum_probs=46.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG--------KVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
.|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +....+.++++|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555677777777777777776 667777777776665542 223345566666666666666666666
Q ss_pred HHHHH
Q 011323 169 IDGCA 173 (488)
Q Consensus 169 ~~~~~ 173 (488)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 65544
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.98 E-value=0.00028 Score=64.33 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcch
Q 011323 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236 (488)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (488)
+.+......++..+....+.+.+..++-+.+.. ....-..|..++++.|.+.|..+.++.+++.=.. .|+-||.++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~--yGiF~D~~s 140 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ--YGIFPDNFS 140 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh--cccCCChhh
Confidence 334444555555555555555555555555433 1111223334555555555555555555554333 355555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (488)
++.+|..+.+.|++..|.++...|...+...++.++...+.+|.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 55555555555555555555554444443444444444444333
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.95 E-value=0.00018 Score=51.02 Aligned_cols=80 Identities=18% Similarity=0.368 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHhHH
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVVF 200 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 200 (488)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999998 899999999999887643 244678889999999999999999
Q ss_pred HHHHHHHHc
Q 011323 201 NALITACGQ 209 (488)
Q Consensus 201 ~~ll~~~~~ 209 (488)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00058 Score=51.30 Aligned_cols=21 Identities=24% Similarity=0.195 Sum_probs=8.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011323 168 LIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~ 188 (488)
+...+.+.|+++.|...|+.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHH
Confidence 333333444444444444433
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.92 E-value=0.00067 Score=50.92 Aligned_cols=100 Identities=13% Similarity=-0.009 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC--CCHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLK--ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE--PNVHTYGAL 168 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 168 (488)
.++..+...+.+.|++++|.+.++.+.+.... .....+..+..++.+.|++++|.+.|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566677788889999999999888765311 12456677888889999999999999988865211 124567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
..++...|+.++|.+.++++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888888999999999999888774
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.89 E-value=0.00051 Score=62.56 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=53.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 011323 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (488)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (488)
.+...|+++.|...|+++++.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445555566666665555543 3344555555555555666666666665555531 2234455555555556666666
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Q 011323 428 GLMLLSQAKEDGVIPNLVMFKCIIGM 453 (488)
Q Consensus 428 a~~~~~~~~~~~~~~~~~~~~~li~~ 453 (488)
|...|+++.+ +.|+.......+..
T Consensus 89 A~~~~~~al~--l~P~~~~~~~~l~~ 112 (356)
T PLN03088 89 AKAALEKGAS--LAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 6666655554 33444433434433
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.89 E-value=0.00027 Score=50.48 Aligned_cols=92 Identities=20% Similarity=0.177 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 011323 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (488)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444555556666666665555432 2233444455555555566666666665555432 223345555555566666
Q ss_pred CHHHHHHHHHHHHH
Q 011323 424 DVEVGLMLLSQAKE 437 (488)
Q Consensus 424 ~~~~a~~~~~~~~~ 437 (488)
+++.|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666655543
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.88 E-value=0.031 Score=54.72 Aligned_cols=229 Identities=10% Similarity=0.002 Sum_probs=150.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcC
Q 011323 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 106 (488)
.-+--++..+++..|++....+.++. |.......+-+-...+.|+.++|...++... ..|..+...+-..|-..+
T Consensus 14 rpi~d~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 14 RPIYDLLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 33444567899999999999999886 5544444444445667788999998887543 357778888999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------
Q 011323 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG---------- 176 (488)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------- 176 (488)
+.++|..+++...+. -|+..-...+..+|.+.+++.+-.++--++.+. .+-+...+=++++.+...-
T Consensus 92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 999999999999875 566777888888999988876654444444433 1223333334444443321
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 011323 177 QVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (488)
Q Consensus 177 ~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 255 (488)
-..-|.+.++.+.+.+ -.-+..-...-...+...|++++|..++..-.... -...+...-+.-+..+...+++.+..+
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHH
Confidence 1234666777776554 11122222223344556788999999984433221 112222333456677788889998888
Q ss_pred HHHHHHhcC
Q 011323 256 VYKMIHKYN 264 (488)
Q Consensus 256 ~~~~~~~~~ 264 (488)
+-..+...+
T Consensus 248 l~~~Ll~k~ 256 (932)
T KOG2053|consen 248 LSSRLLEKG 256 (932)
T ss_pred HHHHHHHhC
Confidence 888888776
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.87 E-value=0.00044 Score=49.29 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
.+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444455555555555555554432 2233444555555555555555555555555442 223344555555555555
Q ss_pred CHHHHHHHHHHHH
Q 011323 177 QVAKAFGAYGIMR 189 (488)
Q Consensus 177 ~~~~a~~~~~~~~ 189 (488)
+++.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555544
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00023 Score=60.07 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=64.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 011323 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (488)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 393 (488)
..+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 455667777777777777654 3456666666677777777777777666666544 23356677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH
Q 011323 394 MEVLSDMKSLGLCPNTITYSILL 416 (488)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~ 416 (488)
++.|++.++ +.|+..+|..=+
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHH
Confidence 777777665 466665555443
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.00029 Score=59.43 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=79.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHhcCChh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 109 (488)
+.+.++++|.+|++.|.+.++.. |.+++++-.-..++.+.|.++.|++-.+....-| ..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 44557889999999999998876 8889998888889999999999999988876433 347788888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITT 136 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (488)
+|++.|++.++. .|+-.+|..=+..
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 999998888764 6666666544443
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00077 Score=61.40 Aligned_cols=88 Identities=13% Similarity=0.002 Sum_probs=47.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 392 (488)
.+...|+++.|+..|.++.+.. +.+...|..+..+|...|++++|...++++.+.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3344555555555555555543 2344455555555555555555555555555543 2344455555555555566666
Q ss_pred HHHHHHHHHh
Q 011323 393 TMEVLSDMKS 402 (488)
Q Consensus 393 a~~~~~~~~~ 402 (488)
|+..|++.++
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 6665555554
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.00051 Score=55.52 Aligned_cols=84 Identities=13% Similarity=0.149 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 444555555555666666666665554321111 2345555556666666666666666655431 2234444455555
Q ss_pred HhhcCCH
Q 011323 419 CERKDDV 425 (488)
Q Consensus 419 ~~~~g~~ 425 (488)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5555543
No 160
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.78 E-value=0.0026 Score=48.96 Aligned_cols=97 Identities=7% Similarity=-0.067 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
...-.+...+...|++++|.++|+-+.... +.+..-|-.|..++-..|++++|+..+....... +-++..+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 334445555667788888888887776654 4455666677777777788888888887777653 34567777777777
Q ss_pred hhcCCHHHHHHHHHHHHHc
Q 011323 420 ERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~ 438 (488)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888877776654
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.77 E-value=0.0001 Score=48.91 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=48.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHH
Q 011323 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (488)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (488)
|+++|++++|+++|+++.... |.+......++.++...|++++|.++++++. .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 567899999999999998887 7788888888889999999999999998876 3443444333
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.75 E-value=0.0017 Score=49.96 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
.+...+...|++++|..+|+.+.... +-+..-|..|..++-..|++++|++.|....... +-|...+..+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33344455566666666665555443 3344455555555555566666666666555554 234555555555666666
Q ss_pred CHHHHHHHHHHHHh
Q 011323 177 QVAKAFGAYGIMRS 190 (488)
Q Consensus 177 ~~~~a~~~~~~~~~ 190 (488)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555543
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=8.6e-05 Score=51.67 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHH
Q 011323 353 KNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLM 430 (488)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 430 (488)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+ ..| +......+..+|...|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4444444444444433210 1222233344444444444444444444 11 111 12222233444444444444444
Q ss_pred HHH
Q 011323 431 LLS 433 (488)
Q Consensus 431 ~~~ 433 (488)
+++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.72 E-value=0.00022 Score=49.57 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVL 115 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 115 (488)
+|+++.|+.+++.+.+......+..+...++..+...|++++|..++++.. +.+....-.+..++.+.|++++|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 677888888888887765211134444446667777777777777776522 123333334456677777777777776
Q ss_pred HH
Q 011323 116 RL 117 (488)
Q Consensus 116 ~~ 117 (488)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 165
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=5e-05 Score=41.06 Aligned_cols=26 Identities=31% Similarity=0.661 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 377 MNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 377 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
|+.++.+|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
No 166
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.70 E-value=0.0011 Score=58.10 Aligned_cols=130 Identities=13% Similarity=0.031 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (488)
.+|..++....+.+..+.|..+|.+..+.+.. +...|...... +...++.+.|..+|+...+. ...+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 35666666666667777777777776644221 23333333333 22245555577777776654 34556666666677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
+...++.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776644 2222 23666666666666777777777766665
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=5.9e-05 Score=40.74 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 168
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.014 Score=51.79 Aligned_cols=320 Identities=12% Similarity=0.042 Sum_probs=154.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011323 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (488)
+.+..++..|+..+....+.. +.+...|..-...+...|+++++.--.+.-.+.. +-....+.-.-+++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 344455666666666666554 3345555555555666666666654444433321 00112222333333333444444
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHH-HHHHHhcCCHHHHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMI 260 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~ 260 (488)
.+.++ +...+ ....++..++.+.... .-+|...++..+ ..++...|++++|...--.+
T Consensus 137 ~~~~~---------~~~~~-----------~~anal~~~~~~~~s~-s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 137 EEKLK---------SKQAY-----------KAANALPTLEKLAPSH-SREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHhh---------hhhhh-----------HHhhhhhhhhcccccc-cCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 44333 00101 0111222222222110 111322333322 23445566666666666555
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH-------------HHHHHHHHHhcCCHHHHHHHH
Q 011323 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF-------------LSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~a~~~~ 327 (488)
.+.+ ..+......-..++.-.++.+.+...|.+.+..+ |+... +..-..-..+.|.+..|.+.+
T Consensus 196 lkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 196 LKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred Hhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 5544 2222222222223334556666666666655543 22211 111122345778888999988
Q ss_pred HHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 011323 328 QEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 328 ~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
.+.+... ..++...|.....+..+.|+.++|+.-.++....+ ..-...|..-..++...+++++|++-++...+..
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8887643 45566677777777888899999888888877532 1111222222345556788888888888876542
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 011323 405 LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449 (488)
Q Consensus 405 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (488)
..+ ...++.-...++-++.+.+ =.+++.-.......|.-..|.-
T Consensus 352 ~s~e~r~~l~~A~~aLkkSkRkd-~ykilGi~~~as~~eikkayrk 396 (486)
T KOG0550|consen 352 KDCEIRRTLREAQLALKKSKRKD-WYKILGISRNASDDEIKKAYRK 396 (486)
T ss_pred cccchHHHHHHHHHHHHHhhhhh-HHHHhhhhhhcccchhhhHHHH
Confidence 222 2344444444444333322 1222322233334455555643
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.68 E-value=0.012 Score=50.27 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 011323 346 MGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 398 (488)
...|.+.|.+..|..-++.+.+. +-+........++.+|...|..++|.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 33444455555555544444432 111122233334444444555444444443
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.0014 Score=57.44 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=97.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (488)
.+|..+++...+.+..+.|..+|..+.+.+ ..+..+|...... |...++.+.|..+|+...+. ...+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 367888888888888999999999888544 3344556555555 33356777799999998876 33477788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 314 AGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
+.+.++.+.|..+|++.... +.++ ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999998865 3332 358888888888999999999999888764
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.64 E-value=0.018 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=11.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHh
Q 011323 273 TIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
..+...+.+.|++++|.++|+++..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444445555555555555555443
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.64 E-value=0.0041 Score=54.86 Aligned_cols=135 Identities=10% Similarity=0.124 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-----CC
Q 011323 341 SYSSLMGACSNA-KNWQKALELYEHMKSI----KLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-----PN 408 (488)
Q Consensus 341 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~ 408 (488)
.+..+...|... |+++.|.+.|++..+. + .+. ..++..+...+.+.|++++|.++|++....... .+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 444555566666 7777777777766431 2 111 234455666777777777777777776543221 12
Q ss_pred HH-HHHHHHHHHhhcCCHHHHHHHHHHHHHc--CCCC--cHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCCcc
Q 011323 409 TI-TYSILLVACERKDDVEVGLMLLSQAKED--GVIP--NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQI 478 (488)
Q Consensus 409 ~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~ 478 (488)
.. .+...+-.+...||+..|.+.+++.... ++.. .......||.++-. .+...+.+++..++.+.+-|
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~--~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE--GDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT--T-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh--CCHHHHHHHHHHHcccCccH
Confidence 21 2233344555677777777777776644 2222 23344445555432 23334444444455544443
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.63 E-value=0.0026 Score=60.72 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011323 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (488)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 200 (488)
+.+...|..+...+...|++++|...+++.... .|+...|..+...+...|+.++|.+.|++.... .|...+|
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 445677877777777789999999999998887 468888888899999999999999999888765 4554454
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.073 Score=50.75 Aligned_cols=319 Identities=11% Similarity=0.055 Sum_probs=176.6
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHhHHHHH
Q 011323 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA----DCKLYTTLITTCAKSGKVDAMFEV 149 (488)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 149 (488)
-|.+++|.++|-.+...|. .+..+.+.|++-...++++.- |... -...|+.+...++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999998887765544 355667778887777666431 1111 235788888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 011323 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 229 (488)
+..-... ...+.++.+..++++...+-..+. .+....-.+..++.+.|.-++|.+.+-+...
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---- 880 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL---- 880 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----
Confidence 7664321 235666666667766655554433 3445566677888888888888877655421
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-----------GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
| ...+..|...++|.+|.++-+...-..+. .+. -...-|..+.+.|.+-.|-+++.+|.++
T Consensus 881 --p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~-~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 881 --P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADA-NHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred --c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhc-chHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 2 13455677777777777766543211110 000 0112355666777777777777777543
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011323 299 ----GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (488)
Q Consensus 299 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 374 (488)
+.+| ...-...+-+..-..+..++.+-.+....+|...+... +...|-..++-++.+..-+ -...
T Consensus 953 e~~K~~p~-lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEA 1021 (1189)
T KOG2041|consen 953 EQEKYVPY-LRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEA 1021 (1189)
T ss_pred HhhccCCH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHH
Confidence 3332 22111111111112233344444444445553322221 2233344444444443332 1234
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..|..|..--...|..+.|++.--.+.+ ..+-|....|+.+.-+.+....+.-.-+.|-++..
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 5555566666677888888776554443 12556677777776665555555444444444433
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.59 E-value=0.0099 Score=56.82 Aligned_cols=136 Identities=12% Similarity=0.008 Sum_probs=82.8
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 011323 300 VIPDEVFLSALIDFAGHA-----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--------KNWQKALELYEHMK 366 (488)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 366 (488)
...+...|...+.+.... ++...|..+|++..+.. +-....+..+..++... .++..+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 344666666666654322 22556777777777653 22233444433333221 12233344444333
Q ss_pred hC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 367 SI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 367 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.. ....+...|.++.......|++++|...+++..+. .|+...|..+...+...|+.++|...++++...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 32 12345567777766666678888888888888874 467788888888888888888888888887764
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.59 E-value=0.03 Score=47.88 Aligned_cols=176 Identities=9% Similarity=-0.034 Sum_probs=102.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH- 316 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 316 (488)
...+...|++++|.+.|+.+.... +.++... -.++.++.+.++++.|...+++..+..+.....-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344556777888888887777654 2233332 34566777778888888888777765433222223222222221
Q ss_pred -cC---------------C---HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011323 317 -AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (488)
Q Consensus 317 -~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 377 (488)
.+ + ...|+..|+.++ .-|-.+.-..+|...+..+... . ...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~---l-a~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR---L-AKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH---H-HHHH
Confidence 10 1 123333344433 3333333445555544444321 1 1111
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 378 NALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 378 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
..+.+.|.+.|.+..|+.-++.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 24567788999999999999998864 223345667788899999999999988776554
No 177
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.0061 Score=49.24 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=42.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (488)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344445555555555555555555554322221 2345555555556666666666665555542 2234444445555
Q ss_pred HHhcCCHH
Q 011323 349 CSNAKNWQ 356 (488)
Q Consensus 349 ~~~~g~~~ 356 (488)
+...|+..
T Consensus 116 ~~~~g~~~ 123 (172)
T PRK02603 116 YHKRGEKA 123 (172)
T ss_pred HHHcCChH
Confidence 55555433
No 178
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.58 E-value=0.033 Score=46.40 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=65.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH----
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---- 346 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 346 (488)
+.+.++.++.-.|.+.-....+++.++...+.++...+.+...-.+.||.+.|...|+...+..-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3444555555555555556666666555544455556666666666666666666666554432222222222222
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 347 -GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 347 -~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..|.-++++.+|...+.++...+ +.|+...|.-.-+..-.|+..+|++.++.|.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22334455555555555555433 23333333333333344555566666655554
No 179
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.57 E-value=0.0013 Score=53.17 Aligned_cols=88 Identities=22% Similarity=0.355 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------------cCCHHHHHH
Q 011323 125 ADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----------------AGQVAKAFG 183 (488)
Q Consensus 125 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~ 183 (488)
.+-.+|..++..+.+. |.++-....+..|.+.|+..|..+|+.|++.+=+ -.+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3444555555555433 4444455555555666666666666666654432 123456888
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 184 AYGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
++++|...|+.||..++..++..+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999998877665
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.0023 Score=51.53 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
++..+...+...|++++|...++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 181
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.54 E-value=0.004 Score=50.39 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=58.3
Q ss_pred CccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------------CChhHHH
Q 011323 336 SVGIISYSSLMGACSN-----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG----------------DQLPKTM 394 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 394 (488)
..+..+|..+++.|.+ .|..+=....+..|.+.|+..|..+|+.|+..+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3467788888888764 355666667777888888888888888888876541 2334455
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 011323 395 EVLSDMKSLGLCPNTITYSILLVACERKD 423 (488)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (488)
+++++|...|+-||..++..++..+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 56666666666666666666665555544
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.53 E-value=0.00047 Score=45.64 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=29.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
..|++++|++.|+.+.+.. +.+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666655543 335555555666666666666666666665554
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.51 E-value=0.0032 Score=50.68 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 011323 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (488)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (488)
...+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++...... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666677777788888888888776543322 23467777777888888888888888777653 23344555555
Q ss_pred HHHH
Q 011323 347 GACS 350 (488)
Q Consensus 347 ~~~~ 350 (488)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.47 E-value=0.011 Score=43.73 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=45.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 011323 346 MGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVAC 419 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~ 419 (488)
..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..++++.... .|+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3444555666666666666665554332 223444555566666666666666665542 122 12222233445
Q ss_pred hhcCCHHHHHHHHHHHH
Q 011323 420 ERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~ 436 (488)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55666666666554433
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.38 E-value=0.012 Score=43.63 Aligned_cols=93 Identities=18% Similarity=0.075 Sum_probs=43.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (488)
..++-..|+.++|+.+|++....|+..+ ...+..+...+...|++++|..++++.....+.-.-+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3344455666666666666665554332 22344445555556666666666655554311100011111112223445
Q ss_pred cCCHHHHHHHHHHHH
Q 011323 247 AGQVDRAREVYKMIH 261 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~ 261 (488)
.|+.++|...+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 556665555554433
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.016 Score=49.50 Aligned_cols=113 Identities=16% Similarity=0.041 Sum_probs=68.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCCCHHHH
Q 011323 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCPNTITY 412 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~ 412 (488)
+-|...|-.|..+|...|+++.|..-|.+..+.. .+|...+..+..++.... ...++..+|++++... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4466677777777777777777777777666554 455666666555544322 2446667777766542 3345556
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 011323 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (488)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 452 (488)
..|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 666666777777777777777777642 33334444554
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.016 Score=49.54 Aligned_cols=127 Identities=12% Similarity=-0.016 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALEL 361 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~ 361 (488)
.+....-++.-...++. |...|-.|..+|...|+.+.|..-|....+.. .+++..+..+..++.... +..++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44444445554555554 88999999999999999999999999998874 567788888877765433 46789999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (488)
|+++...+ +-|......|...+...|++.+|...|+.|.+.. +|+ ..+..++
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~-~~rr~~i 267 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PAD-DPRRSLI 267 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCC-CchHHHH
Confidence 99999876 5677788888889999999999999999999862 333 3444444
No 188
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.11 Score=46.51 Aligned_cols=258 Identities=12% Similarity=0.020 Sum_probs=133.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 109 (488)
+...+..++..|+..+...++.. |+++..+..-+..+...+++++|.--.+... +.....+.-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 44457778899999999988876 6666666655555566677777665554332 111111111111222222222
Q ss_pred HHHHH---------------HHHHHHcC-CCCCHHHHHHH-HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH--
Q 011323 110 GAFQV---------------LRLVQEAG-LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID-- 170 (488)
Q Consensus 110 ~a~~~---------------~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-- 170 (488)
+|.+. ++...... -+|...++..+ ..++.-.|+.++|.++--..++.. ....+...++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 22222 22221111 12333444433 345556688888887776666542 1222333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH-------------HHHHHccCCHHHHHHHHHHHhhCCC-CCCCCcch
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL-------------ITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHIT 236 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------l~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 236 (488)
++.-.++.+.+...|++.+..+ |+...--.. ..-..+.|.+..|.+.|.+.+...+ ...++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 3334667788888888777553 333221111 1123456777777777777654321 12223334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
|.....+..+.|+.++|+.--+...+.+ +.-...+..-..++...++|++|.+-+++..+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555666777777777666666543 111223333445555566677777766665553
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.33 E-value=0.00088 Score=43.80 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (488)
...+.+.|++++|++.|+++++.. |.+...+..++.++...|++++|...|+.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355677888888888888888776 6777777777777777777777777777653
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.32 E-value=0.17 Score=48.47 Aligned_cols=367 Identities=12% Similarity=0.099 Sum_probs=214.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC-CCHHHHHHHHHH---------
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSV--------- 101 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~--------- 101 (488)
...|+..=.+++|.+..+ .+ +.+.+..+++.+....-.++.|...|-+... +.+.....+-..
T Consensus 670 ~~~Lve~vgledA~qfiE----dn---PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~ae 742 (1189)
T KOG2041|consen 670 VMNLVEAVGLEDAIQFIE----DN---PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAE 742 (1189)
T ss_pred HHHHHHHhchHHHHHHHh----cC---CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHh
Confidence 345555566777777665 33 4455666778887777888889888866542 222221111111
Q ss_pred -HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHH
Q 011323 102 -CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVA 179 (488)
Q Consensus 102 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 179 (488)
-+--|++++|++++-+|.++.+ .+..+.+.|++-.+.++++.--.. .-+.-...|+.+...+.....++
T Consensus 743 i~~~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 743 ISAFYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred HhhhhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 1224889999999988776542 467778889988887776542111 00112457889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (488)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 259 (488)
+|.+.|..-... ...+.++.+..++++.+.+.+.+. .+....-.+..++.+.|.-++|.+.+-+
T Consensus 814 ~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp-------e~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 814 EAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLP-------EDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC-------cccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 999999865422 245677777777777666665553 3444666788888899988888876654
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-----------PDEVFLSALIDFAGHAGKVEAAFEILQ 328 (488)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 328 (488)
... | ...+..|...++|.+|.++-+...-..+. .+.. ..--|..+.+.|+.-.|-+++.
T Consensus 878 ~s~----p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~ 947 (1189)
T KOG2041|consen 878 RSL----P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLS 947 (1189)
T ss_pred ccC----c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHH
Confidence 321 1 23455677777888887776543211000 0111 1223667788888877877877
Q ss_pred HHHHC----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 011323 329 EAKNQ----GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 329 ~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
+|.+. +.++ ...-...+-+..-..+..++.+-.+....+|...+... +...|-..++-++.+..=+
T Consensus 948 qmae~e~~K~~p~-lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-- 1017 (1189)
T KOG2041|consen 948 QMAEREQEKYVPY-LRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-- 1017 (1189)
T ss_pred HHhHHHhhccCCH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--
Confidence 77643 3332 22111111111122344555555565555554333221 2233334444444443211
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHH
Q 011323 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCII 451 (488)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li 451 (488)
-.....|..+..--...|.++.|++.--.+.+. .+-|....|+.+.
T Consensus 1018 -gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1018 -GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred -hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 123445556666667788888888766555554 4666666666543
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.30 E-value=0.036 Score=46.07 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=8.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011323 241 MKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~ 261 (488)
+.++.+.|+++.|...++.+.
T Consensus 49 a~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 49 AYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444433
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.28 E-value=0.058 Score=42.49 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHH
Q 011323 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (488)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (488)
-|++..--.|..+....|+..+|...|++....-+..|......+.++....++...|..+++.+-+.. +-..+..+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-PAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-CccCCCCchH
Confidence 567777777888888888888888888888766566677778888888888888888888888876542 1112233555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011323 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (488)
Q Consensus 239 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 294 (488)
.+.+.+...|.+.+|..-|+...+.- |++..-......+.+.|+.+++..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 66777888888888888888887753 4444444444556666766655544433
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.25 E-value=0.0017 Score=42.38 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=28.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
..+.+.|++++|+..|+.+.+.. +-+...+..+..++...|++++|...|+.+.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555555555443 234445555555555555555555555555443
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.24 E-value=0.0091 Score=56.00 Aligned_cols=244 Identities=14% Similarity=0.190 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHcCCHhHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 011323 128 KLYTTLITTCAKSGKVDAMFEV---------FHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVKPD 196 (488)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 196 (488)
..+..=+..|...|.+++|.++ |+.+... ..+.-.++.-=.+|.+-.+ +-+...-+++++++|-.|+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 3344455666777777776553 2222211 1123334444556666554 3345555677778887677
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHH------------HHHHhc-
Q 011323 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMIHKY- 263 (488)
Q Consensus 197 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------~~~~~~- 263 (488)
... +...++-.|.+.+|-++|.+--.+ +..+..|.....++.|.+++ ++-.+.
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~e-----------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGHE-----------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCch-----------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 654 344566678888888888765322 12233333333334333333 221110
Q ss_pred -CCCCCHHHHHHHHHHHHccCChHHHHHHHHH---------HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011323 264 -NIKGTPEVYTIAINCCSQTGDWEFACSVYDD---------MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (488)
Q Consensus 264 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 333 (488)
++... .+....+...|+.++|..+..+ +-++--..+..+...+...+.+...+..|-++|..|-+.
T Consensus 701 r~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 701 RNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred hhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 11111 1233444555666666554321 111111124455666666666777788888888876543
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-----------TMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..++......++|.+|..+-+...+. .||.. -|...-.+|.+.|+-.+|.++++++..
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 35677788899999998888776543 33322 122233456667777777777776643
No 195
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.24 E-value=0.25 Score=50.45 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS--TMNALITAL 384 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~ 384 (488)
|.+....+...+.+++|.-.|+..-+. .-.+.+|..+|+|++|..+..++.. ..+.. +-..|+..+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence 333444445566777776666544321 2345677888888888888777642 12222 225677778
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
...+++-+|-+++.+.... |. -.+..+++...+++|.++....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 8889988888888876642 22 2233344555566666655443
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.22 E-value=0.0015 Score=43.38 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHH
Q 011323 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD-DVEVGLMLLSQAK 436 (488)
Q Consensus 376 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 436 (488)
.|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444321 112334444444444444 3444444444443
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.11 Score=43.53 Aligned_cols=142 Identities=6% Similarity=0.003 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---
Q 011323 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI--- 381 (488)
Q Consensus 305 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 381 (488)
.....++......|.+.-....+.++++...+.++.....+++.-.+.||.+.|...|++..+..-+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34666777777888999999999999998878889999999999999999999999999876543344444444433
Q ss_pred --HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 011323 382 --TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449 (488)
Q Consensus 382 --~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (488)
..|.-.+++..|...+.++.+.. +.|+...+.-.-...-.|+...|++.++.|... .|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 34566788999999998887653 345555555455555678999999999999975 344444443
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.16 E-value=0.0031 Score=41.77 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 154 (488)
.+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444445555555555555555554443 233444445555555555 3555555555444
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.11 E-value=0.12 Score=42.91 Aligned_cols=179 Identities=8% Similarity=0.024 Sum_probs=95.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 318 (488)
...+...|++++|...|+.+..... +-.......++.++.+.|+++.|...+++..+..+......+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3456678888888888888876532 12245566778888888999999999888776533322222222222221111
Q ss_pred CHHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 011323 319 KVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 319 ~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
...... ...... .--...+..++.-|-.+.-..+|...+..+... . ...--.+...|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHHH
Confidence 111110 000000 001234555555565666666666655555421 1 1112235677888888888888
Q ss_pred HHHHHHhCCCCCC---HHHHHHHHHHHhhcCCHHHHH
Q 011323 396 VLSDMKSLGLCPN---TITYSILLVACERKDDVEVGL 429 (488)
Q Consensus 396 ~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~ 429 (488)
-++.+++. .+-+ ......++.++.+.|..+.+.
T Consensus 163 r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88888764 2222 334566778888888776443
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.09 E-value=0.017 Score=49.80 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhHHHHH
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNAL 203 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 203 (488)
|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|+.+.+.- -+.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444443334455566666666655554 2222 344455555556666666666666655431 01112333334
Q ss_pred HHHHHccCCHHHHHHHHHHHhhC
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
..++...|+.++|..+|+.+...
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555556666666666655543
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.00 E-value=0.26 Score=44.73 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
+|...+..-.+...++.|..+|-+..+.+ +.+++.++++++..++ .|+...|.++|+--... ++.+..-..-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 44455555566667777888888877766 5567777777777665 46777777777765442 222333334555666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCC
Q 011323 420 ERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGR 475 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~ 475 (488)
.+.++-..|..+|+...+. +..+ ..+|..+|+--.. .+..+..+.+++...-|..
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6777777777777754432 1122 4456666643222 4666666666666555544
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.98 E-value=0.05 Score=42.51 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCcHHHHH
Q 011323 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMFK 448 (488)
Q Consensus 376 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 448 (488)
+...++..+...|++++|.++++.+.... |.+...|..++.++...|+..+|.++|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44556666778888888888888887742 45677888888888888888888888877642 38888776543
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.91 E-value=0.0093 Score=39.97 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=33.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
..|.+.+++++|+++++.+...+ |.+...+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666666553 345555555666666666666666666666554
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.89 E-value=0.023 Score=49.02 Aligned_cols=97 Identities=19% Similarity=0.107 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHH
Q 011323 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (488)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 240 (488)
|...+..+.+.|++++|...|+.+... .|+ ...+..+..+|...|++++|...|+.+....+.-......+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444333334456666666666666554 222 13444555556666666666666666554321111111233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 011323 241 MKACANAGQVDRAREVYKMIHKY 263 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~ 263 (488)
..++...|+.+.|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44445555555555555555543
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.86 E-value=0.0078 Score=40.34 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=20.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|.+.++...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444444332 2233333333344444444444444444443
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.84 E-value=0.17 Score=40.04 Aligned_cols=127 Identities=13% Similarity=0.031 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-ccHHHHHH
Q 011323 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSS 344 (488)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 344 (488)
.|+......+.+.....|+..+|...|.+...--..-|....-.+.++....+++..|...++.+.+.+.. -++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444455555556666666666666665554333345555555555555556666666665555543210 11222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
+.+.+...|....|+.-|+...+. -|+...-......+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 445555566666666666655543 233333333334444555444443
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.83 E-value=0.012 Score=46.05 Aligned_cols=70 Identities=23% Similarity=0.327 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-----cCCCCCHHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIEPNVHT 164 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 164 (488)
+...++..+...|++++|..+.+.+.... |.+...|..+|.++...|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555666666777776666666554 44566666667777777776666666666532 366666554
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.81 E-value=0.025 Score=50.25 Aligned_cols=273 Identities=15% Similarity=0.083 Sum_probs=144.8
Q ss_pred HHHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHH--HH--cCCC-CC
Q 011323 93 STFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEM--VN--AGIE-PN 161 (488)
Q Consensus 93 ~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~ 161 (488)
+++..-+. -+++.|+....+.+|+...+.| ..|. .+|..|..+|.-.+++++|+++...= +. .|-+ -.
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGE 94 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGE 94 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcc
Confidence 34444333 4677888888888888888776 3333 34666677777777888887764321 11 0100 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCC-CCHhHHHHHHHHHHccCC--------------------HHHH
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGI----MRSKNVK-PDRVVFNALITACGQSGA--------------------VDRA 216 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~ll~~~~~~g~--------------------~~~a 216 (488)
......|...+--.|.+++|+-.-.+ ..+.|-. .....+..+...|...|. ++.|
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~A 174 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENA 174 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHH
Confidence 11222233333445555555433211 1111110 122334445555544332 2233
Q ss_pred HHHHHHHhhCC---CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHccCChHHH
Q 011323 217 FDVLAEMNAEV---HPVDPDHITIGALMKACANAGQVDRAREVYKMIH----KYNIK-GTPEVYTIAINCCSQTGDWEFA 288 (488)
Q Consensus 217 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a 288 (488)
.+.|.+-.+-. ...-.-...|..+.+.|.-.|+++.|+...+.-. +.|-. .....+..+.+++.-.|+++.|
T Consensus 175 v~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 175 VKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 33333211100 0000112245555555666678888877665332 22211 1234677788888888888888
Q ss_pred HHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCccHHHHHHHHHHHHhcCCHHHH
Q 011323 289 CSVYDDMTK----KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G-ISVGIISYSSLMGACSNAKNWQKA 358 (488)
Q Consensus 289 ~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a 358 (488)
.+.|+.... .|- .......-++...|.-..+++.|+.++.+-... + ..-....+-+|..+|...|..++|
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 888876432 221 123345556777777777888888877653321 1 112356777888888888888888
Q ss_pred HHHHHHHH
Q 011323 359 LELYEHMK 366 (488)
Q Consensus 359 ~~~~~~~~ 366 (488)
..+.+...
T Consensus 335 l~fae~hl 342 (639)
T KOG1130|consen 335 LYFAELHL 342 (639)
T ss_pred HHHHHHHH
Confidence 87776554
No 209
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.80 E-value=0.033 Score=41.77 Aligned_cols=98 Identities=8% Similarity=0.013 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
|..++..++.++++.|+.+....+++..-.. .++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 3456667777777777777776666554321 111100 0000 0112346788888888888
Q ss_pred HHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHh
Q 011323 418 ACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 455 (488)
+|+..|++..|+++++...+. +++.+..+|..|+.-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888887755 88888888888887543
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.78 E-value=0.028 Score=51.25 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=55.0
Q ss_pred cccccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchH---HHHHHHHHHHhhhHHHHHHHHHhhhCCC
Q 011323 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK---VYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (488)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (488)
....|++.......-..|.+.|++++|+..|++.++.+ |.+. ..+..++..+...|+.++|+..++++..
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777777777788889999999999999998887 5555 3477778888888888888888887654
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.73 E-value=0.39 Score=42.79 Aligned_cols=286 Identities=15% Similarity=0.077 Sum_probs=151.3
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHhH--HHHHHHHHHccCCHHH
Q 011323 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC--AKAGQVAKAFGAYGIMRSKNVKPDRVV--FNALITACGQSGAVDR 215 (488)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~ 215 (488)
.|+-..|.++-.+..+. +..|....-.++.+. .-.|+++.|.+-|+.|... |.... ...|.-.--+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35656666555443321 123434344444433 2367777777777777642 22211 2222223345677777
Q ss_pred HHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHH--HHHHHHHHH---HccCChHHHH
Q 011323 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPE--VYTIAINCC---SQTGDWEFAC 289 (488)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~~~~~~a~ 289 (488)
|...-++.-... +.-...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+- .-..+...|.
T Consensus 173 Ar~yAe~Aa~~A---p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 173 ARHYAERAAEKA---PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHhhc---cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 777666655431 1112456667777777788888887777554432 122211 111111111 1112344444
Q ss_pred HHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH---
Q 011323 290 SVYDDMTKKGVIPDEVF-LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM--- 365 (488)
Q Consensus 290 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--- 365 (488)
..-.+..+ +.||..- -..-..++.+.|+..++-.+++.+-+....| ..... ..+.+.|+. +..-+++.
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~l--Y~~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALL--YVRARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHH--HHHhcCCCc--HHHHHHHHHHH
Confidence 44444333 2333321 2223456777888888888888887764333 33222 233455553 22222222
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHcCCCCc
Q 011323 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPN 443 (488)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~ 443 (488)
.+.. +.+..+-..+..+-...|++..|..--+...+ ..|....|..+.+.-.. .|+-.++...+.+..+..-.|+
T Consensus 322 ~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 322 ESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 2222 34456666677777778888777766666654 46777777777666544 4888888888877776544443
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.66 E-value=0.35 Score=46.01 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 011323 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (488)
Q Consensus 43 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (488)
+.+.-++++.++|..|. ..+ ++..+.-.|.+.+|.++|.+.-
T Consensus 618 ~li~EL~~~k~rge~P~-~iL---lA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPN-DLL---LADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred HHHHHHHHHHhcCCCch-HHH---HHHHHHhhhhHHHHHHHHHHcC
Confidence 33333444555553332 222 3344555666777777776643
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.64 E-value=0.031 Score=49.71 Aligned_cols=265 Identities=18% Similarity=0.065 Sum_probs=156.7
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH--HhC--CC-CCCHhHHHHHHH
Q 011323 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIM--RSK--NV-KPDRVVFNALIT 205 (488)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~-~~~~~~~~~ll~ 205 (488)
.-+++.|+......+|+..++.|.+ |. .+|..|..+|.-.+++++|++....= ... |- .-...+-..|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578999999999999999998843 43 35777788888889999998764321 110 10 001112222333
Q ss_pred HHHccCCHHHHHHHHHHHhh----CCCCCCCCcchHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 011323 206 ACGQSGAVDRAFDVLAEMNA----EVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (488)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 261 (488)
.+--.|.+++|.....+-.. -+..+ .....+-.+..+|...|. ++.|.++|..-.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 33444556655543222110 00000 111233334445544332 233334433211
Q ss_pred ----hcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 262 ----KYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMT----KKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (488)
Q Consensus 262 ----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 331 (488)
+.|- ..-...|..+.+.|.-.|+++.|+...+.-. +-|-. .....+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 0112356777778888899999987765422 22221 123567778888889999999999888643
Q ss_pred H----CC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 332 N----QG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-----KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 332 ~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
. .| -.......-+|...|.-..++++|+.++.+-... ...-....+..|..+|...|..++|+.+.+.-+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 22 1234556677888888888999999888765321 112345678889999999999999988877654
No 214
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.47 Score=42.38 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (488)
.+..+.-+...|+...|.++-.+. . .|+...|...+.+++..++|++...+... +-++.-|..++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 333444555556665555554443 1 24666666666666666666665554321 1123556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 011323 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 398 (488)
.|...+|..+..++ + +..-+..|.++|++.+|.+...
T Consensus 250 ~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666655541 1 1234555666666666655543
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.59 E-value=0.5 Score=42.16 Aligned_cols=280 Identities=14% Similarity=0.080 Sum_probs=169.0
Q ss_pred hhhHHHHHHHHHhhhCC---CCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHh
Q 011323 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVD 144 (488)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 144 (488)
...|+-..|+++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|.. .|... -...|.-..-+.|+.+
T Consensus 95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHH
Confidence 33466666666655432 334444433443 33446888899988888874 22222 2334444445678888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHh--HHHHHHHHHHc---cCCHHHHHH
Q 011323 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRV--VFNALITACGQ---SGAVDRAFD 218 (488)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~ll~~~~~---~g~~~~a~~ 218 (488)
.|...-++.-..- +.-...+.+.+...+..|+++.|+++++.-+... +.++.. .-..|+.+-.. ..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 8888887776542 2345678888888899999999999888766542 233322 22233332211 234555555
Q ss_pred HHHHHhhCCCCCCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH---
Q 011323 219 VLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD--- 294 (488)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--- 294 (488)
.-.+..+ +.||... -..-...+.+.|+..++-.+++.+-+....| .+... ..+.+.|+.. ..-++.
T Consensus 251 ~A~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~l--Y~~ar~gdta--~dRlkRa~~ 320 (531)
T COG3898 251 DALEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALL--YVRARSGDTA--LDRLKRAKK 320 (531)
T ss_pred HHHHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHH--HHHhcCCCcH--HHHHHHHHH
Confidence 5444433 3555432 2334567888899999999999887764333 33332 2344555532 333332
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 011323 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSI 368 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 368 (488)
+.....+ +......+..+....|++..|..--+...+ ..|....|..+...-. ..||-.++...+.+..+.
T Consensus 321 L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2222222 556677777888888998888777766665 3577777777776654 458988998888887754
No 216
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.25 Score=42.41 Aligned_cols=145 Identities=11% Similarity=0.084 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC-CHHHHH---HHHHHHHh
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFN---MLMSVCAS 104 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~---~l~~~~~~ 104 (488)
+.....++..|++.+|..+|....... +.+......++..+...|+.+.|..++..++.. ....+. .-+..+.+
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 334455668899999999999888876 667777778888888889999999999888732 222222 23445555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCC
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQ 177 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 177 (488)
.....+..++-...-.. +-|...-..+...+...|+.++|.+.+-.+.+.. -..|...-..++..+.-.|.
T Consensus 216 aa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 216 AAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 55555555555554432 3466777777888888888888887766665431 13355556666666665553
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.42 Score=41.06 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=24.5
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
...|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555544432 1123344444555555555555555555543
No 218
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.87 Score=44.92 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=75.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHhcCChh
Q 011323 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 109 (488)
-++.|.+...++-|+.+...-.... ..-..++...+..+.+.|++++|...|-+.. ..++. .++.-+....+..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s---~Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS---EVIKKFLDAQRIK 414 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH---HHHHHhcCHHHHH
Confidence 3456667777788887765432211 2234566777777888899999988885543 22221 2344455555666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (488)
+--..++.+.+.|+ .+...-..|+.+|.+.++.+.-.+..+..
T Consensus 415 nLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 415 NLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 66677788888774 45556667888999888877766655443
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.49 E-value=0.28 Score=38.23 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=39.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
..|++++|..+|+-+.-.+ ..+..-+..|..++-..+++++|...|......+ ..|+..+-....+|...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 4455555555555544433 2233344444444445555555555554443332 1233333344445555555555555
Q ss_pred HHHHHHh
Q 011323 396 VLSDMKS 402 (488)
Q Consensus 396 ~~~~~~~ 402 (488)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554443
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.44 E-value=0.048 Score=40.88 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=20.7
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHH
Q 011323 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (488)
Q Consensus 194 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (488)
.|+..+..+++.+|+..|++..|+++++.+... .+++.+..+|..|++
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Confidence 344444444444444444444444444444433 123333334444443
No 221
>PRK15331 chaperone protein SicA; Provisional
Probab=96.41 E-value=0.17 Score=39.48 Aligned_cols=92 Identities=8% Similarity=-0.120 Sum_probs=75.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 424 (488)
...-+...|++++|..+|+-+...+ ..+..-|..|..++-..+++++|+..|......+ .-|+..+......+...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 3444568999999999999988765 4567778888888999999999999999876543 3456667778889999999
Q ss_pred HHHHHHHHHHHHHc
Q 011323 425 VEVGLMLLSQAKED 438 (488)
Q Consensus 425 ~~~a~~~~~~~~~~ 438 (488)
.+.|+..|+...+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998873
No 222
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.31 E-value=0.75 Score=41.12 Aligned_cols=106 Identities=11% Similarity=0.041 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
.+..+.-+...|+...|.++-++.. -|+...|..-+.+++..++|++..++... +.++..|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3334444555666666655544431 24566666666666666666665554321 1233566666666666
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 432 (488)
.|+..+|..+..++ ++ ..-+..|.+.|++.+|.+..
T Consensus 250 ~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHH
Confidence 66666666666551 11 23344556666666665554
No 223
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.29 E-value=0.83 Score=41.39 Aligned_cols=72 Identities=8% Similarity=0.166 Sum_probs=33.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 101 VCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCAK---SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
.|-...+++..+++.+.+...- +..+...-.....++.+ .|+.++|++++..+......++..+|..+.+.|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3444555666666666555421 11111222223333344 556666666665544333345555555555544
No 224
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.26 E-value=0.39 Score=45.08 Aligned_cols=168 Identities=13% Similarity=0.153 Sum_probs=98.9
Q ss_pred CchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHh
Q 011323 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (488)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 104 (488)
+.....-+...+-+|+++++.+..+.-.-.. .-+......++.++.+.|-.+.|+++-.. + ..-.....+
T Consensus 261 ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~ 330 (443)
T PF04053_consen 261 LDLSELEFKTAVLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQ 330 (443)
T ss_dssp --HHHHHHHHHHHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHH
T ss_pred ECHHHHHHHHHHHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHh
Confidence 4456667777778888888777765111111 11233455667777777877777776542 1 223445567
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (488)
.|+.+.|.++.+. ..+...|..|.......|+++-|.+.|.+... |..|+-.|.-.|+.+...++
T Consensus 331 lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 331 LGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp CT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred cCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 7788777766432 33666888888888888888888888877542 45666677777887777777
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
.+.....|- ++....++.-.|+.++..+++.+.
T Consensus 396 ~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 396 AKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 776666542 455555566667777777776654
No 225
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=1.3 Score=43.17 Aligned_cols=77 Identities=10% Similarity=0.056 Sum_probs=35.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 392 (488)
-+...|+..+|.++-++.+ -||...|-.=+.+++..+++++-+++-+..+ .+.-|...+.+|.+.|+.++
T Consensus 693 ~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH
Confidence 3344455555544443332 2344444444555555555554444333221 12344445555555555555
Q ss_pred HHHHHHH
Q 011323 393 TMEVLSD 399 (488)
Q Consensus 393 a~~~~~~ 399 (488)
|.+++-+
T Consensus 763 A~KYipr 769 (829)
T KOG2280|consen 763 AKKYIPR 769 (829)
T ss_pred Hhhhhhc
Confidence 5555544
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.22 E-value=0.94 Score=41.33 Aligned_cols=129 Identities=10% Similarity=0.117 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 011323 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALIT 382 (488)
Q Consensus 305 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 382 (488)
..|...+....+..-++.|..+|-++.+.+ ..+++..+++++..++ .|+..-|..+|+--... .||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 445555555555555666666666666655 3455555666665443 44555666666543322 2333333 33444
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 383 ALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+...++-+.|..+|+...+. +..+ ...|..++.--...|+...+..+-+++.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 455556666666666644332 2222 34566666666666666666555555554
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.20 E-value=0.012 Score=39.98 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKSL----GL-CPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+|+.+...|...|++++|+..+++..+. |- .|+ ..++..+...+...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555666666666666666666665421 10 111 34556666667777777777777766543
No 228
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.19 E-value=0.29 Score=45.91 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=88.4
Q ss_pred HHHHHhhhHHHHHHHHHhh--hCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 011323 67 FFNVCKSQKAIKEAFRFFK--LVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (488)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (488)
..+.+.-.++++++.+..+ .+. .-.....+.+++.+-+.|.++.|+++-.+ +. .-.....+.|++
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 3344455567777544433 111 11244567777777777888777776432 21 134555677777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
+.|.++.++. ++...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 7777665442 3666788888888888888888777776542 345555666677777666666655
Q ss_pred hhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (488)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 260 (488)
...+ -++....++.-.|+.++..+++...
T Consensus 400 ~~~~--------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERG--------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT---------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHcc--------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5431 2444555555667777666665543
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.18 Score=45.22 Aligned_cols=96 Identities=9% Similarity=-0.012 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
.++..+..+|.+.+++.+|++.....++.+ ++|......=..+|...|+++.|+..|+++++ +.|+....+.=|..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456777888889999999999888888764 56777777778888889999999999998887 557666655544444
Q ss_pred hh----cHHHHHHHHHHhhhccC
Q 011323 455 SR----RYEKARTLNEHVLSFNS 473 (488)
Q Consensus 455 ~~----~~~~a~~~~~~~~~~~~ 473 (488)
.. ..++..+++..|....+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 32 44555667776655443
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.12 Score=46.30 Aligned_cols=138 Identities=17% Similarity=0.124 Sum_probs=87.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 112 (488)
|.+.+.|++..|...|+.+...= .....+ . .++.... ...-..+++.+.-.+.+.+++.+|+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l--~~~~~~-----------~-~ee~~~~----~~~k~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFL--EYRRSF-----------D-EEEQKKA----EALKLACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHh--hccccC-----------C-HHHHHHH----HHHHHHHhhHHHHHHHhhhhHHHHH
Confidence 56678888888888888765431 000000 0 0111000 0122346666777788888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH-HHHHHHHHHHh
Q 011323 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVA-KAFGAYGIMRS 190 (488)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~ 190 (488)
+.-+..++.+ ++|+...-.-..++...|+++.|+..|+.+.+. .|+ ..+-+.++.+..+..+.. ...++|..|..
T Consensus 278 ~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 278 ESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888775 677777777888888888888888888888876 444 444455555555544443 34677777764
Q ss_pred C
Q 011323 191 K 191 (488)
Q Consensus 191 ~ 191 (488)
.
T Consensus 355 k 355 (397)
T KOG0543|consen 355 K 355 (397)
T ss_pred c
Confidence 3
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.09 E-value=1.1 Score=40.96 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH--HHc
Q 011323 320 VEAAFEILQEAKNQGISVGIISYSSLM----GACSN---AKNWQKALELYEHMKSIKLKPTV----STMNALITA--LCD 386 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~ 386 (488)
-+.|+.+++.+.+-. +-|...-|.+. .+|.+ ...+..-.++-+-+.+.|++|-. ..-|.|..+ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 566666666666542 22333322222 22221 22233334444444455555432 233333332 335
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (488)
.|++.++.-.-..+.+ +.|++.+|..+.-......++++|..++.. ++|+..++++
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 6677766655555554 567777777777666667777777776643 4455555544
No 232
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=1.6 Score=42.63 Aligned_cols=320 Identities=13% Similarity=0.085 Sum_probs=181.9
Q ss_pred HHhcCChhHHHHHHHHH--------HHcCCCCCHHHHHH-----HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 102 CASSKDSEGAFQVLRLV--------QEAGLKADCKLYTT-----LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
+.+..++++-..+-+.+ ..-|++.+..-|.. +++-+...+.+..|.++-..+...-.. ....|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 34445555544444332 24567777666654 466677788889999888777532111 16777777
Q ss_pred HHHHHhcCCH--HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC--CCCcchHHHHHHHH
Q 011323 169 IDGCAKAGQV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKAC 244 (488)
Q Consensus 169 ~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~l~~~~ 244 (488)
..-+.+..+. +.+.+..++=.+... ....+|..+.+-....|+.+-|..+++.=......+ -.+...+...+.-+
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 7777776432 233333333222222 345677777777778999999988876532221111 01223345556667
Q ss_pred HhcCCHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH--------HHHccCChHHHHHHHH--HHH----hCC
Q 011323 245 ANAGQVDRAREVYKMIHKYN-----------IKGTPEVYTIAIN--------CCSQTGDWEFACSVYD--DMT----KKG 299 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~~--~~~----~~~ 299 (488)
...|+.+....++-++...- .+.....|.-++. .+.+.++-..+...|. ... ..+
T Consensus 557 ies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~ 636 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEG 636 (829)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcc
Confidence 77788777777766554431 1111112222221 0111111111111111 100 012
Q ss_pred CCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 300 VIPDEVFLSALIDFAGHAGKV----------EAAFEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
..|+ .......+.+.... ..-+.+.+.+.. .+......+.+--+.-+...|+..+|.++-.+.+
T Consensus 637 r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-- 711 (829)
T KOG2280|consen 637 RIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-- 711 (829)
T ss_pred cchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--
Confidence 2222 22333344433321 112222222222 1222333455666677788999999999888776
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
-||...|..-+.+++..+++++..++-+.+. ++.-|.....+|.+.|+.++|.+++-+..
T Consensus 712 --ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 712 --IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred --CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 6899999999999999999988777766543 26678889999999999999999996544
No 233
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.04 E-value=0.077 Score=44.81 Aligned_cols=113 Identities=18% Similarity=0.244 Sum_probs=62.7
Q ss_pred HHHhhhCC--CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 011323 81 FRFFKLVP--NPTLSTFNMLMSVCASS-----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (488)
Q Consensus 81 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (488)
.+.|+.++ +.|-.+|...+..+... +..+-....++.|.+-|+..|..+|+.|+..+=+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------- 122 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------- 122 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-----------
Confidence 34455554 45566666666555432 4455555566667777777777777777665432211
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
.| ...+....-.|-+ +-+-+++++++|...|+.||..+-..++.++.+.+.
T Consensus 123 -----iP-~nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 123 -----IP-QNVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -----cc-HHHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 01 1111111111211 223466777777777777777777777777776665
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.99 E-value=0.028 Score=38.23 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
.+++.+...|...|++++|...|++..+. |- .|+ ..++..+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555566666666666655555421 10 011 3345555556666666666666665543
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=95.99 E-value=0.76 Score=42.45 Aligned_cols=79 Identities=10% Similarity=-0.001 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
+|.+.-+...+.+ +.|+.....+..+....++++.|...|++....+ +....+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4444444444443 3345555555555555555555555555555443 2223333333334444555555555555544
Q ss_pred h
Q 011323 402 S 402 (488)
Q Consensus 402 ~ 402 (488)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 3
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.96 E-value=0.84 Score=38.51 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=25.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHH
Q 011323 346 MGACSNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 400 (488)
.+.|.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|...|-.++|.+.-+-+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34455555555555555555543 12222 22333444555555555555444433
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.93 E-value=0.46 Score=35.26 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=20.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 011323 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
..+...|+-+...+++..+...+ .+++...-.+..+|.+.|+..++-+++++..+.|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33334444444444444433211 3333444444444444444444444444444433
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.92 E-value=0.33 Score=44.59 Aligned_cols=65 Identities=12% Similarity=-0.056 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI---ISYSSLMGACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 303 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
+...+..+..+|.+.|++++|+..|++..+.+.. +. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666666666666666666666666664321 12 24666666666666666666666666653
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.91 E-value=1.1 Score=42.68 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE------VYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEV 305 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 305 (488)
.+..++....-.||-+.+++.+....+.+-.-.+. .|..++..++. ..+.+.|.+++..+.++- |+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcH
Confidence 44556666666677777777776654432111211 23333333332 345667788888777753 3444
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 306 FLSAL-IDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (488)
Q Consensus 306 ~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 381 (488)
.|... ...+...|++++|++.|+...... .+.....+--+.-.+.-.++|++|...|..+.+.. ..+...|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 33332 335566788888888887654321 11223344455566677788888888888887654 34445554443
Q ss_pred H-HHHcCCCh-------hHHHHHHHHHH
Q 011323 382 T-ALCDGDQL-------PKTMEVLSDMK 401 (488)
Q Consensus 382 ~-~~~~~~~~-------~~a~~~~~~~~ 401 (488)
. ++...|+. ++|.+++.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 33455666 67777777653
No 240
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=0.65 Score=36.37 Aligned_cols=130 Identities=11% Similarity=0.102 Sum_probs=87.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHHHHH-----
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLM----- 99 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~----- 99 (488)
..+...-.|.+.|+.++|+.-|.++.+.|....+.........+....|+...|...|..+-. +.+....-+.
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 344444556689999999999999999886666666666677777788889999999987642 2222222221
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
-.+...|.++......+-+...+-+.....-..|.-+..+.|++..|.+.|..+...
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 134567777777777666654443444455556666667778888888888777653
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.59 E-value=1.7 Score=39.40 Aligned_cols=28 Identities=21% Similarity=0.086 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
-+..++.++.-.|++++|.+..++|.+.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4456778888899999999999999875
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.48 E-value=0.28 Score=46.71 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (488)
....+.|.++++.+.++- |....+...-+++....|++++|++.|+.+
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 445666777777776653 666666666666666677777777777654
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.40 E-value=0.34 Score=41.11 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=48.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHH
Q 011323 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAIN 277 (488)
Q Consensus 200 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 277 (488)
|+.-+..+ ..|++..|...|.......++-......+-.|..++...|++++|..+|..+.+... +.-+..+.-+..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444332 445566666666555554222222222344455555666666666666555544311 112345555555
Q ss_pred HHHccCChHHHHHHHHHHHhC
Q 011323 278 CCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 278 ~~~~~~~~~~a~~~~~~~~~~ 298 (488)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555556666666666655554
No 244
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.35 E-value=0.23 Score=42.09 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=63.6
Q ss_pred CCCcchHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC----------------ChHHHH
Q 011323 231 DPDHITIGALMKACAN-----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG----------------DWEFAC 289 (488)
Q Consensus 231 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 289 (488)
+.|..+|...+..+.. .++++-....++.|.+.|+.-|..+|+.|++.+-+-. +-.-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3444455555554432 3556666666777777777777788887777665432 234578
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011323 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (488)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 320 (488)
+++++|..+|+.||..+-..+++++.+.+-.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8999999999999999999999999887753
No 245
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.32 E-value=0.83 Score=33.99 Aligned_cols=68 Identities=13% Similarity=0.084 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 011323 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (488)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 441 (488)
+....+..+..+...|.-|.-.+++.++... -.+++.....+..+|.+.|+..++-+++.++-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4455666778888999999999999998754 3788999999999999999999999999999888864
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.31 E-value=1.7 Score=38.58 Aligned_cols=126 Identities=15% Similarity=0.109 Sum_probs=55.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHccCChHHHHHHHHHHHh----CCCCCCHHHHH--
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKG-----TPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLS-- 308 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~-- 308 (488)
+..++...+.++++++.|+...+..... ...++..+...|.+..++++|.-+..+..+ .++..-...|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444455555555555555443321111 123455555555555565555544433221 12111111111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHH----CCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 309 ---ALIDFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 309 ---~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
.+.-++...|.+..|.+.-++..+ .|-++ .......+.+.|...|+.+.|+.-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122244455555555554444332 23111 1233445555666666666666555543
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.30 E-value=1.9 Score=40.10 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHH
Q 011323 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALI 204 (488)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll 204 (488)
.+-..+..++.+.|+.++|.+.+.+|.+.... .+......|+.++...+.+.++..++.+-.+...+.+ ..+|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 33445666777788888888888888764211 2334667788888888888888888887654433222 23454433
No 248
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.29 E-value=2.8 Score=39.94 Aligned_cols=385 Identities=13% Similarity=0.098 Sum_probs=223.3
Q ss_pred chhHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHH
Q 011323 26 SEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (488)
Q Consensus 26 ~~~~~~~~~l~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (488)
......|..++..+ ..+.+..++..++.. .|.-..+...++..-.+.|..+.+..+|++.. +-+...|...
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y 119 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSY 119 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34566788888543 345566666766654 37777777778888888899999999999875 4566677666
Q ss_pred HHHH-HhcCChhHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---
Q 011323 99 MSVC-ASSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC--- 172 (488)
Q Consensus 99 ~~~~-~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 172 (488)
...+ ...|+.+...+.|+..... |.. .....|...|..-..++++.....+++++++.. ..-|+....-|
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHH
Confidence 6544 3467888888888877653 211 245578888888888899999999999998642 22222222222
Q ss_pred Hhc------CCHHHHHHHHHHHHhC---------------CC----CCC-H--hHHHHHHHH-------HHccCCHHHHH
Q 011323 173 AKA------GQVAKAFGAYGIMRSK---------------NV----KPD-R--VVFNALITA-------CGQSGAVDRAF 217 (488)
Q Consensus 173 ~~~------~~~~~a~~~~~~~~~~---------------~~----~~~-~--~~~~~ll~~-------~~~~g~~~~a~ 217 (488)
... ...+++.++-...... ++ .|. . ...+.+-.. +-..-...+..
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKR 275 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 222 2234443333222210 00 111 0 001111111 11111222222
Q ss_pred HHHHHHhhCC-CCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011323 218 DVLAEMNAEV-HPVDP----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (488)
Q Consensus 218 ~~~~~~~~~~-~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 292 (488)
..++.-.... ..++| +..+|..-+..-...|+.+.+.-+|+...-. +..-...|--.+.-....|+.+-|..++
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 3333332210 01122 3456777777778899999999988877542 1222334444455555558888888877
Q ss_pred HHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCccH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHh
Q 011323 293 DDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKAL---ELYEHMKS 367 (488)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~---~~~~~~~~ 367 (488)
....+-..+ +......+-. ..-..|++..|..+++.+...- |+. ..-..-+....+.|..+.+. .++.....
T Consensus 355 ~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~ 431 (577)
T KOG1258|consen 355 ARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE 431 (577)
T ss_pred HhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc
Confidence 766554332 2222222222 2345689999999999998764 432 22233344556778888777 33333332
Q ss_pred CCCCCCHHHHHHHHHH-----HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 011323 368 IKLKPTVSTMNALITA-----LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (488)
Q Consensus 368 ~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (488)
. .-+..+...+.-- +.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 432 ~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 432 G--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred c--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2 2222333333222 23367899999999999886 6778888888888777655
No 249
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.21 E-value=0.83 Score=35.56 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=34.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 011323 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (488)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (488)
++.++.+++..+++.+.-.. |....+...-..++...|++.+|+++|+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 36677777777777776655 5566666666666666677777777776654
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.20 E-value=2.7 Score=39.23 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 343 SSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 343 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
..+..++.+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33444445555555555555555432111 122344445555555555555555555543
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.12 E-value=0.72 Score=34.18 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=55.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCC
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT---YGALIDGCAKAGQ 177 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~ 177 (488)
+++..|+.+.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+..-..+... |..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566677777777777666542 44666777777777777777777777776665422222222 2222334556667
Q ss_pred HHHHHHHHHHHHhCC
Q 011323 178 VAKAFGAYGIMRSKN 192 (488)
Q Consensus 178 ~~~a~~~~~~~~~~~ 192 (488)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777776666665555
No 252
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.11 E-value=1.5 Score=35.86 Aligned_cols=182 Identities=16% Similarity=0.091 Sum_probs=109.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 324 (488)
-..|-+.-|.--|....... +.-+.+||.+.-.+...|+++.|.+.|+...+.++.-+-...+.-|. +--.|++..|.
T Consensus 76 DSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq 153 (297)
T COG4785 76 DSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQ 153 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhH
Confidence 34455555555565555543 44578899999999999999999999999988765534333333333 33468899998
Q ss_pred HHHHHHHHCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 325 EILQEAKNQGISVGI--ISYSSLMGACSNAKNWQKALELYE-HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 325 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
+-+...-+.... |+ ..|--+. ...-++.+|..-+. +.. ..|..-|...+..|.-.+-.+ ..+++++.
T Consensus 154 ~d~~~fYQ~D~~-DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~ 223 (297)
T COG4785 154 DDLLAFYQDDPN-DPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISE--ETLMERLK 223 (297)
T ss_pred HHHHHHHhcCCC-ChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccH--HHHHHHHH
Confidence 888777766522 22 2222222 23345666665443 333 345555555444443222111 12333333
Q ss_pred hCCCCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 011323 402 SLGLCPN-------TITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 402 ~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
.. -..+ ..||..+.+-+...|+.++|..+|+-.....
T Consensus 224 a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 224 AD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 21 1111 4578889999999999999999998877643
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=1 Score=39.35 Aligned_cols=154 Identities=8% Similarity=-0.058 Sum_probs=108.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCH
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS----ALIDFAGHAGKV 320 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 320 (488)
--.|+..+|-..++++.+.- |.|...+...=.+|.-.|+...-...++++... ..||...|. ...-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34677777778888887753 677778888888888999988888888887764 223332222 233345578999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
++|++.-++..+.+ +.|...-.+....+...|++.++.++..+-... +--.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999888888775 556677777888888899999998887765421 11112234555556677778999999999
Q ss_pred HHHH
Q 011323 398 SDMK 401 (488)
Q Consensus 398 ~~~~ 401 (488)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.89 E-value=0.55 Score=39.94 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHhHHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KP-DRVVFNALI 204 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~ll 204 (488)
.|+.-+..+ +.|++..|...|...++... .-....+-.|..++...|+++.|..+|..+.+.-- .| -+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455444433 55556666666666665421 11223344556666666666666666666654310 11 134455555
Q ss_pred HHHHccCCHHHHHHHHHHHhhC
Q 011323 205 TACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5666666666666666666654
No 255
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.81 E-value=2.6 Score=37.09 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=28.1
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011323 199 VFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (488)
Q Consensus 199 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 263 (488)
++..++.+|...+..+ +|..+++.+.... +-+ ...+..-++.+.+.++.+.+.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555554433 3444444443321 111 223334444455555556666666555543
No 256
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.80 E-value=3.3 Score=38.12 Aligned_cols=421 Identities=13% Similarity=0.102 Sum_probs=224.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHhhhHHHHHHHHHh---hhCCCCCHHHHHHHHH--HHHh
Q 011323 36 IRQGRISECIDLLEDMERKGLLDMD------KVYHARFFNVCKSQKAIKEAFRFF---KLVPNPTLSTFNMLMS--VCAS 104 (488)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~---~~~~~~~~~~~~~l~~--~~~~ 104 (488)
-+++++.+|..+|-++.+.. ..+ ..+...++.++-. ++++.-.... ++-.. ...|-.+.. .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 38999999999999988764 222 1222233333332 2233333322 22222 234444444 3457
Q ss_pred cCChhHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCCCHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYG 166 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 166 (488)
.+.+++|++.+....++ +..+ |-..=+..+.++...|++.++..+++++... ...-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 88999999998777654 2222 1122245677888999999999999888754 3447888999
Q ss_pred HHHHHHHhcC--------C-------HHHHHHHHHHHHhC------CCCCCHhHHHHHHHHHHcc--CCHHHHHHHHHHH
Q 011323 167 ALIDGCAKAG--------Q-------VAKAFGAYGIMRSK------NVKPDRVVFNALITACGQS--GAVDRAFDVLAEM 223 (488)
Q Consensus 167 ~l~~~~~~~~--------~-------~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~ 223 (488)
.++-.+.+.= . ++.+.-...+|... .+.|....+..++....-. ....--+++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 8666655421 1 12222222333221 2234333333333332211 1122222333333
Q ss_pred hhCCCCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 224 NAEVHPVDPDHI-TIGALMKACANAGQVDRAREVYKMIHKYNIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 224 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
.. .-+.|+.. ....+...+.. +.+++..+-+.+....+.+ -..+|..++....+.++...|.+.+.-+...
T Consensus 252 e~--~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 252 EN--FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred Hh--hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 22 12344422 22333333333 5556555555444332111 1357888888899999999998888877654
Q ss_pred CCCCCHH-----HHHHHHHHHH-hc---CCHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 011323 299 GVIPDEV-----FLSALIDFAG-HA---GKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKN-WQKALELYEHMK 366 (488)
Q Consensus 299 ~~~~~~~-----~~~~l~~~~~-~~---g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 366 (488)
.+..... +-..+.+..+ .. -+...-+.+|......++.- =+.....-..-+.+.|. -++|..+++.+.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3221110 0011112222 11 12223344444444433211 01222223344566666 788999999888
Q ss_pred hCCCCCCHHHHHHHH----HHHHc---CCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HhhcCCHHHHHHHHH
Q 011323 367 SIKLKPTVSTMNALI----TALCD---GDQLPKTMEVLSDMKSLGLCPN----TITYSILLVA--CERKDDVEVGLMLLS 433 (488)
Q Consensus 367 ~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~ 433 (488)
+.. +-|..+-|.+. ..|.. ...+.+-+.+-+-+.+.|++|- ...-+.|.+| +...|++.++.-+-.
T Consensus 408 ~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 408 QFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred Hhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 643 33444433322 22322 2334444455455567787774 3344445443 456899999988888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHh
Q 011323 434 QAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468 (488)
Q Consensus 434 ~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~ 468 (488)
.+.+ +.|...+|..+.-.+.. ++++|+.+...+
T Consensus 487 WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 487 WLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 8877 77888888866544443 899999988764
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=94.79 E-value=3.4 Score=38.35 Aligned_cols=145 Identities=12% Similarity=0.178 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHc---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011323 250 VDRAREVYKMIHKY-NIKG-TPEVYTIAINCCSQ---------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (488)
Q Consensus 250 ~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 318 (488)
.+.|..+|.+.... ...| ....|..+..++.. .....+|.+..+...+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 56777788877721 1223 24445544444332 22345677777777777665 8888888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCCChhHHHH
Q 011323 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST---MNALITALCDGDQLPKTME 395 (488)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~ 395 (488)
+++.|...|++....+ +....+|......+.-+|+.++|.+.+++..+.. |.... .-..+..|+. ...+.|++
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 8999999999998875 3345566666666778999999999999877653 43322 2222335554 45677777
Q ss_pred HHHH
Q 011323 396 VLSD 399 (488)
Q Consensus 396 ~~~~ 399 (488)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 7654
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.74 E-value=1.5 Score=33.86 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
++..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+....++. ..+......+++.|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4444444455555555555555444 234445555555555432 2222233221 0122223334445555555
Q ss_pred HHHHHHHHHHH
Q 011323 213 VDRAFDVLAEM 223 (488)
Q Consensus 213 ~~~a~~~~~~~ 223 (488)
++++.-++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=1.3 Score=38.82 Aligned_cols=155 Identities=13% Similarity=0.046 Sum_probs=111.7
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHccCC
Q 011323 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY---NIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 284 (488)
...|...+|-..++++... .+.|...+...-.+|.-.|+.......++++... +.|-...+...+.-++...|.
T Consensus 114 ~~~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888888889998874 4667777777778899999999999999888754 222223444455666778899
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ---GISVGIISYSSLMGACSNAKNWQKALEL 361 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 361 (488)
+++|++.-++..+.+.. |...-.++...+...|+..++.++..+-.+. +.-.-..-|-...-.+...+.++.|..+
T Consensus 191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999988886554 7777778888888899999999887764432 1111122233334445667899999999
Q ss_pred HHHHH
Q 011323 362 YEHMK 366 (488)
Q Consensus 362 ~~~~~ 366 (488)
|+.-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 98654
No 260
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.60 E-value=1.6 Score=33.66 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011323 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (488)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (488)
..++..+...+.+.....+++.+...+ ..++..++.++..|++.+ ..+..+.+.. . ++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555555666666666666666555 345566666666666542 2233333331 1 1222234455555555
Q ss_pred CCHHHHHHHHHHH
Q 011323 318 GKVEAAFEILQEA 330 (488)
Q Consensus 318 g~~~~a~~~~~~~ 330 (488)
+.++++..++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.46 E-value=0.16 Score=29.81 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=9.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 011323 380 LITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 380 l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
+...|.+.|++++|.++++++++
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444333
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.40 E-value=0.71 Score=39.90 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 203 (488)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|++.|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556677777778888888888877764 44677788888888888888888888877754 4677776666555
Q ss_pred HHH
Q 011323 204 ITA 206 (488)
Q Consensus 204 l~~ 206 (488)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 263
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.39 E-value=2.4 Score=34.78 Aligned_cols=187 Identities=14% Similarity=0.033 Sum_probs=91.4
Q ss_pred HHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 011323 68 FNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (488)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (488)
+.++-+.|-+.-|+--|.+.. +.-+..||.+.-.+...|+++.|.+.|+...+....-+-...|.-| ++---|++.
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~ 150 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYK 150 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchH
Confidence 334444455555555554432 3345678888888888888888888888887764222222222222 233457788
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH-HHccCCHHHHHHHHHH
Q 011323 145 AMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSGAVDRAFDVLAE 222 (488)
Q Consensus 145 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~ 222 (488)
-|.+-|...-+.. -.|-...|--+. -..-++.+|..-+.+--+ ..|..-|...|-. |...=..+ .++++
T Consensus 151 LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e---~l~~~ 221 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEE---TLMER 221 (297)
T ss_pred hhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHH---HHHHH
Confidence 8877766665542 112222232222 233456666544333221 1233444333322 22111112 22333
Q ss_pred HhhCCCCC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011323 223 MNAEVHPV----DPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (488)
Q Consensus 223 ~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 264 (488)
+......- ..=..||--+.+.+...|+.++|..+|+.....+
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 33210000 0001244555566666777777777777665543
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.38 E-value=0.67 Score=40.06 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-----hCCCCCCHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-----SLGLCPNTITYSI 414 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~~~ 414 (488)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+. +.|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445556666666777777777777766655 4566667777777777777777777766654 3466666666555
Q ss_pred HHHH
Q 011323 415 LLVA 418 (488)
Q Consensus 415 l~~~ 418 (488)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
No 265
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.33 E-value=5.1 Score=38.31 Aligned_cols=367 Identities=11% Similarity=0.118 Sum_probs=208.1
Q ss_pred HHHHHHHHhhhCCC--CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHH
Q 011323 76 AIKEAFRFFKLVPN--PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFH 151 (488)
Q Consensus 76 ~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~ 151 (488)
+.+.++..+..... |... -|......-.+.|..+.+..+|++..+ +++.+...|...+..+.. .|+.+...+.|+
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34566666666552 4444 456666677788999999999999886 467777777777665544 578888888888
Q ss_pred HHHHc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH---Hcc------CCHHHHHHHH
Q 011323 152 EMVNA-GI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC---GQS------GAVDRAFDVL 220 (488)
Q Consensus 152 ~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~------g~~~~a~~~~ 220 (488)
..... |. -.+...|...|..-..++++.....+|++.++.. ...++....-| ... ...+++.++-
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 87764 32 2466788888988888999999999999998652 12222222211 111 2233333322
Q ss_pred HHHhhC----------------CCC-CCCC-c--chHHHHHHHH-------HhcCCHHHHHHHHHHHHhc---CC----C
Q 011323 221 AEMNAE----------------VHP-VDPD-H--ITIGALMKAC-------ANAGQVDRAREVYKMIHKY---NI----K 266 (488)
Q Consensus 221 ~~~~~~----------------~~~-~~~~-~--~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~---~~----~ 266 (488)
.....+ ... ..|. . ...+.+-..+ -...........|+.-.+. .+ .
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 222110 000 0010 0 0111111111 1111111111222211111 01 1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--ccHHHHHH
Q 011323 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS--VGIISYSS 344 (488)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~ 344 (488)
++..+|...+..-...|+++.+.-.|+...-.-.. -...|-..+.-....|+.+.|..++....+-.++ |....+.+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 23456778888888999999999988886542111 1223333344444458989888888776665433 33333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHHH---HHHHHHHhCCCCCCHHHHHHHHH---
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLPKTM---EVLSDMKSLGLCPNTITYSILLV--- 417 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~--- 417 (488)
. ..-..|++..|..+++.+.+.- |+.. .-..-+....+.|..+.+. .++....+. .-+..+...+.-
T Consensus 374 ~--f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 R--FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFA 447 (577)
T ss_pred H--HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHH
Confidence 3 3455789999999999987653 4432 2223344556777877777 333333321 122222222222
Q ss_pred --HHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011323 418 --ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 418 --~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (488)
.+.-.++.+.|..++.++.+. .+++...|..++..+.
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 233467889999999988874 5566667777777654
No 266
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.29 E-value=0.15 Score=29.85 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEA 121 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (488)
+..+...|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444455555555555555554443
No 267
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.18 E-value=1.4 Score=32.82 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=41.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCCH
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN---TITYSILLVACERKDDV 425 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~ 425 (488)
++..|+++.|++.|.+....- +.+...||.-..++.-.|+.++|+.-+++..+..-..+ -..|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344555555555555544332 23445555555555555555555555555444211111 11222223344455555
Q ss_pred HHHHHHHHHHHHcC
Q 011323 426 EVGLMLLSQAKEDG 439 (488)
Q Consensus 426 ~~a~~~~~~~~~~~ 439 (488)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55555555544433
No 268
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.17 E-value=7 Score=40.70 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=56.2
Q ss_pred CCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc
Q 011323 159 EPNVHTYGALI----DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (488)
Q Consensus 159 ~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 234 (488)
.|+...+.... ..+...+.+++|--.|+..-+. ...+.+|..+|+|.+|+.+..++... .|.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~-----~de 997 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG-----KDE 997 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC-----HHH
Confidence 44544444333 3333455666666555543221 23456666677777777766665431 221
Q ss_pred ch--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011323 235 IT--IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (488)
Q Consensus 235 ~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 294 (488)
.. -..|..-+...+++-+|-++.....+. ..-.+..+++...+++|.++...
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 11 134555555566665555555544432 11223344455556666655443
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.94 E-value=1.8 Score=35.02 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455556666666666666666666555432222 2344555555556666666655555544
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=3.7 Score=34.42 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=94.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011323 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (488)
Q Consensus 199 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (488)
.|.....+|....++++|...+.+.... ..-+... +-..+.++.|.-+.+.+.... .-...|+--...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~---yEnnrsl-------fhAAKayEqaamLake~~kls--Evvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG---YENNRSL-------FHAAKAYEQAAMLAKELSKLS--EVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH---HHhcccH-------HHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHH
Confidence 3444455666677777777666555431 1111111 111223344444444444321 122345555556
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CC--CCccHHHHHHHHHHHHhcC
Q 011323 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN---QG--ISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 279 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g 353 (488)
|..+|.++.|-..+++.-+. ...-+++.|++++++... .+ ...-...+..+-+.+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 66666666655555543321 112233344444433221 10 0111223344444555556
Q ss_pred CHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhhcCCH
Q 011323 354 NWQKALELYEHMKS----IKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLG---LCPNTITYSILLVACERKDDV 425 (488)
Q Consensus 354 ~~~~a~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~ 425 (488)
.+.+|-..+.+-.. ..-.++. ..|...|-.+.-..++..|.+.++.-.+.+ -+-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 66655544433221 1111221 234445555556667777777777643321 123455666777766 45676
Q ss_pred HHHHHHH
Q 011323 426 EVGLMLL 432 (488)
Q Consensus 426 ~~a~~~~ 432 (488)
+++.+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 6666554
No 271
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.57 E-value=2.6 Score=32.24 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=9.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 011323 240 LMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
++.+|.+.++++.|...++...+
T Consensus 53 l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33334444444444444443333
No 272
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.49 E-value=1.5 Score=33.56 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=40.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC
Q 011323 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (488)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (488)
+..++++++..+++.+.-.. |........-..++...|++.+|.++|..+..
T Consensus 21 L~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 36888888888888887665 66777777777778888888888888887764
No 273
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.41 E-value=2.7 Score=32.09 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=27.1
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 315 GHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 369 (488)
.+.|++++|.+.|+.+...- .+.....--.++.+|.+.+++++|...+++.++.+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34455555555555554431 11223344445555555555555555555555443
No 274
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.36 E-value=3.8 Score=36.50 Aligned_cols=126 Identities=17% Similarity=0.061 Sum_probs=53.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH--
Q 011323 310 LIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----IKLKPTVSTMN-- 378 (488)
Q Consensus 310 l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~-- 378 (488)
+..+....+.++++++.|+...+.. ......++-.|...|.+..|+++|.-+..+..+ .++..-..-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3334444445555555555443211 011123455555555555555555544433321 12111111111
Q ss_pred ---HHHHHHHcCCChhHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 379 ---ALITALCDGDQLPKTMEVLSDMK----SLGLCPN-TITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 379 ---~l~~~~~~~~~~~~a~~~~~~~~----~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
.|..++-..|..-.|.+.-++.. ..|-++. ......+.+.|...|+.+.|..-|+.+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 12233444555555555444432 2232221 223344455555566666555555543
No 275
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.30 E-value=6.9 Score=36.36 Aligned_cols=131 Identities=13% Similarity=0.078 Sum_probs=98.1
Q ss_pred CCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHH
Q 011323 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMS 100 (488)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~ 100 (488)
.......+++.-...|++..|-+-....+++. |..+....+...+....|+++.+...+..+ ......+...+++
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r 365 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLR 365 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHH
Confidence 45566677888888999999988777777664 455555556667778889999999988544 3456678888899
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (488)
...+.+++++|..+-+-|....++ +...........-..|-++++.-.|+++....
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999999999999876654 44444444444556688899999999887654
No 276
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.95 E-value=1.2 Score=42.31 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChh
Q 011323 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (488)
.-+..++-.|+++.|-.++..+.+.. +..++.+..++|-.++|+++.- .|+.. .....+.|+.+
T Consensus 591 leyqt~vmrrd~~~a~~vLp~I~k~~--------rt~va~Fle~~g~~e~AL~~s~---D~d~r-----Felal~lgrl~ 654 (794)
T KOG0276|consen 591 LEYQTLVLRRDLEVADGVLPTIPKEI--------RTKVAHFLESQGMKEQALELST---DPDQR-----FELALKLGRLD 654 (794)
T ss_pred HHHHHHhhhccccccccccccCchhh--------hhhHHhHhhhccchHhhhhcCC---Chhhh-----hhhhhhcCcHH
Confidence 33445556667766666555554321 2233444555555555554432 11111 22334556666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
.|.++..+. .+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-....
T Consensus 655 iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 655 IAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 666655432 2445666677777777777777766665542 3355556666666665555555555
Q ss_pred hCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 190 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
+.|. .|...-+|...|+++++.+++..-
T Consensus 720 ~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 4442 122333455566666666666553
No 277
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.89 E-value=1.9 Score=34.79 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555666666666666666666554432222 2233445555555556655555555443
No 278
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.67 E-value=2.6 Score=29.80 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHH
Q 011323 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (488)
Q Consensus 392 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~ 454 (488)
+..+-+..+....+-|++....+.+++|.+.+++.-|.++++-++.. |.. ...|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHH
Confidence 45555666666667788888888888888888888888888777654 322 22677666553
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.65 E-value=5.5 Score=33.51 Aligned_cols=199 Identities=16% Similarity=0.075 Sum_probs=100.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-H
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-F 313 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 313 (488)
.+......+...+++..+...+...... ........+......+...+.+..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3344444445555555555555444431 112333444444455555555555555555555433322 111111112 4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCh
Q 011323 314 AGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQL 390 (488)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 390 (488)
+...|+++.+...+........ ......+......+...++.+.+...+....... .. ....+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccH
Confidence 5566666666666666544211 1122333333333556666777777766666543 22 345566666666666677
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 391 PKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
+.|...+...... .|+ ...+..+...+...+..+.+...+.+..+.
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777766653 233 333444444444555667777766666653
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.52 E-value=0.34 Score=26.83 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888888754
No 281
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.43 E-value=5.9 Score=33.32 Aligned_cols=54 Identities=15% Similarity=0.002 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALEL 361 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~ 361 (488)
+...|-.+....++..|...++.-.+.+ -..+..+...|+.+| ..|+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3334444555556666666665533221 123445555555555 44555555444
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.38 E-value=7.5 Score=34.46 Aligned_cols=132 Identities=14% Similarity=0.244 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc--cCC----HHHHHHHHHHHhhCCCCCC-CCcchHHHHHHHHHhcCC-
Q 011323 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ--SGA----VDRAFDVLAEMNAEVHPVD-PDHITIGALMKACANAGQ- 249 (488)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~----~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~- 249 (488)
+++.+.+++.|.+.|+..+..+|-+..-.... ..+ ...+..+++.|++..+-+. ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788888888887777666553333222 222 4578888888887643332 334445554432 3333
Q ss_pred ---HHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCC--hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 250 ---VDRAREVYKMIHKYNIKGTP--EVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALI 311 (488)
Q Consensus 250 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 311 (488)
.+.+...|+.+.+.|+..+. ...+.++........ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34556666666666655432 222333322222211 235566666666666666555555443
No 283
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.28 E-value=12 Score=36.73 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCC
Q 011323 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIK 369 (488)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~ 369 (488)
+.+.|..++....+.| .|+...+-..+..... ..+...|.++|......|
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 4455666665555554 2223222222211111 134556666666655554
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.18 E-value=1.1 Score=39.31 Aligned_cols=90 Identities=18% Similarity=0.106 Sum_probs=60.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHhcCChh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 109 (488)
|.+.++|++++|++.|....... |.+.+++..-+..|.+.+.+..|..-++.+...| +..|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 56678999999999999887765 7888888888888888888888877776554322 223444444444445555
Q ss_pred HHHHHHHHHHHcCCCCC
Q 011323 110 GAFQVLRLVQEAGLKAD 126 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~ 126 (488)
+|.+-.+...+. .|+
T Consensus 183 EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHhHHHHHhh--Ccc
Confidence 555555555543 454
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.06 E-value=8 Score=34.07 Aligned_cols=162 Identities=13% Similarity=0.086 Sum_probs=87.0
Q ss_pred HhcCChhHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcC-CHhHHHHHHHHHHHc--------CCCCCH---
Q 011323 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSG-KVDAMFEVFHEMVNA--------GIEPNV--- 162 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 162 (488)
.+.|+.+.|..++.+..... ..|+. ..|+.-.. ....+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35566777777766665322 12221 12232222 23444 777776666554332 122332
Q ss_pred --HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH
Q 011323 163 --HTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (488)
Q Consensus 163 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (488)
.+...++.+|...+..+ +|..+++.+.... +-.+.++..-++.+.+.++.+.+.+.+.+|.... .-....+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~ 158 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchH
Confidence 35667777887777654 5566666665442 2235556566777777899999999999998752 2122344
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCH
Q 011323 238 GALMKACAN--AGQVDRAREVYKMIHKYNIKGTP 269 (488)
Q Consensus 238 ~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 269 (488)
...+..+.. ......+...+..+....+.++.
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 444444421 12234455555544444344443
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.95 E-value=1.6 Score=30.48 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
-++.+-+..+....+-|++....+.+++|.+.+++.-|.++++-.+.. ...+...|..++.-+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 355555666666667788888888888888888888888888776643 112444666666543
No 287
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.95 E-value=8.5 Score=34.13 Aligned_cols=131 Identities=18% Similarity=0.281 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHhcCC---
Q 011323 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGH--AG----KVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN--- 354 (488)
Q Consensus 287 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 354 (488)
....+++.|.+.|+.-+..+|-+....... .. ....+..+++.|++... .++-..+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344455556666555444444332222221 11 23456666777666542 1233344444322 2222
Q ss_pred -HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCC-C--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 355 -WQKALELYEHMKSIKLKPTVS-TMNALITALCDGD-Q--LPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 355 -~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~-~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
.+.++.+|+.+.+.|+..+.. -+.+-+-++.... . ..++.++++.+.+.|+++....|..+.-..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 244556666666655544322 2222222222211 1 335666777777777777766666554433
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.76 E-value=5.2 Score=31.29 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=41.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 011323 350 SNAKNWQKALELYEHMKSIKLKPTVSTMN-ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428 (488)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 428 (488)
.+.++.+.+..++..+.-. .|...... .-...+...|++.+|+++|+++.+. .|....-..|+..|.....-..=
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHH
Confidence 3455666666666665543 23222221 2233445566666666666665543 23333334444444433222222
Q ss_pred HHHHHHHHHcCCCCcH
Q 011323 429 LMLLSQAKEDGVIPNL 444 (488)
Q Consensus 429 ~~~~~~~~~~~~~~~~ 444 (488)
..+-.++.+.+-.|+.
T Consensus 97 r~~A~evle~~~d~~a 112 (160)
T PF09613_consen 97 RRYADEVLESGADPDA 112 (160)
T ss_pred HHHHHHHHhcCCChHH
Confidence 2333444454444444
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.63 E-value=5.7 Score=31.43 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=72.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHcCCCh
Q 011323 315 GHAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNAL--ITALCDGDQL 390 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~ 390 (488)
.+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.-...|-.. -..-| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44566677777777777665432221 12222334456777777777777765433223221 01111 1234567777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH
Q 011323 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 445 (488)
+.....++.+...+-+-....-..|.-+-.+.|++..|...|..+......|...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 7776666666543322233344556666677788888888887777655555443
No 290
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.55 E-value=7.3 Score=32.54 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=8.7
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 011323 351 NAKNWQKALELYEHMKSI 368 (488)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~ 368 (488)
..+++.+|+++|+++...
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554443
No 291
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.55 E-value=5.9 Score=32.06 Aligned_cols=118 Identities=9% Similarity=0.059 Sum_probs=71.1
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-CCCHHHHHH-----HHHHHHhcCChh
Q 011323 37 RQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNM-----LMSVCASSKDSE 109 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~-----l~~~~~~~~~~~ 109 (488)
+.+.. +.....+.+.... ...........+.......|++++|...++... .+....+.. |.+.....|.++
T Consensus 65 ~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 65 QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKAD 143 (207)
T ss_pred hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444 4444555555443 222333444556666777788888888887654 333333333 334567778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (488)
+|+.+++.....+. .......-.+.+...|+-++|..-|......+
T Consensus 144 ~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 144 AALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88888877665432 22233444567778888888888888877664
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.39 E-value=0.58 Score=25.91 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 011323 165 YGALIDGCAKAGQVAKAFGAYGI 187 (488)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~ 187 (488)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555556666666555555
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.31 E-value=6.2 Score=31.29 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=12.3
Q ss_pred HHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011323 188 MRSKNVKPDRVVFNALITACGQSGAVDR 215 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 215 (488)
+...+++|+...+..++..+.+.|++..
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334444444444444444444444433
No 294
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.26 E-value=8.5 Score=32.74 Aligned_cols=172 Identities=13% Similarity=0.034 Sum_probs=82.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCC--CCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc---
Q 011323 173 AKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--- 247 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 247 (488)
.+.|++++|.+.|+.+..... +-...+.-.++-++.+.+++++|+..+++..... +..|| ..|..-|.+.+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhccC
Confidence 456777777777777765421 1123444455566667777777777777766542 22333 2333333333321
Q ss_pred ----CCHHHH---HHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011323 248 ----GQVDRA---REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (488)
Q Consensus 248 ----~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 320 (488)
.|...+ ..-|+.+... |=.+.=...|......+... =...=..+...|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r---------------yPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR---------------YPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH---------------CCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCh
Confidence 122222 2222222222 11111111121111111110 000112344566777777
Q ss_pred HHHHHHHHHHHHCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 321 EAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
..|..-++.+.+. .+- ....+-.+..+|...|-.++|.+.-.-+.
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 7777777777765 222 23345556677777777777766655443
No 295
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=91.22 E-value=17 Score=36.04 Aligned_cols=150 Identities=10% Similarity=0.039 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
...++.+..+-+..+......++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.++|+...+..+.+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444444443444566667777777777877777777776654321 2234555555566666665555554444422
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 011323 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (488)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (488)
....+......++....... +....+.| ..+|.-+-. ..+.|++.+|.+.+-.+.+.++.|...-..
T Consensus 468 ~~~~~~~~~~~ll~~i~~~~-----------~~~~~L~f-la~yreF~~-~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~ 534 (566)
T PF07575_consen 468 YCNNGEPLDDDLLDNIGSPM-----------LLSQRLSF-LAKYREFYE-LYDEGDFREAASLLVSLLKSPIAPKSFWPL 534 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCcccHHHHHHhcchh-----------hhhhhhHH-HHHHHHHHH-HHhhhhHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 21111111222222111111 00000000 001111111 123477778877777777777777776665
Q ss_pred HHHHH
Q 011323 449 CIIGM 453 (488)
Q Consensus 449 ~li~~ 453 (488)
.+.++
T Consensus 535 LL~d~ 539 (566)
T PF07575_consen 535 LLCDA 539 (566)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55554
No 296
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.83 E-value=20 Score=36.34 Aligned_cols=227 Identities=13% Similarity=0.055 Sum_probs=117.5
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHH-------HHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHhHHHHH
Q 011323 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVH-------TYGALID-GCAKAGQVAKAFGAYGIMRSK----NVKPDRVVFNAL 203 (488)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 203 (488)
......++++|..++.++...-..|+.. .|+.+-. .....|+++.|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456688999999988876642222221 3443322 233578888888887776543 223445666777
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHH-----HHHHHhcCCHHHH--HHHHHHHHhc---CCC---CCHH
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-----MKACANAGQVDRA--REVYKMIHKY---NIK---GTPE 270 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a--~~~~~~~~~~---~~~---~~~~ 270 (488)
..+..-.|++++|..+..+..+.. -..+...+..+ ...+...|+...+ ...|...... ..+ +-..
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a--~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMA--RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 777888899999988877665421 12233333222 2334556643322 2233322221 111 1123
Q ss_pred HHHHHHHHHHcc-CChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCC----ccHHHHH
Q 011323 271 VYTIAINCCSQT-GDWEFACSVYDDMTKKGVIPDEVFL--SALIDFAGHAGKVEAAFEILQEAKNQGIS----VGIISYS 343 (488)
Q Consensus 271 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~ 343 (488)
++..++.++.+. +...++..-+.--......|-.... ..++......|++++|...+.++...... ++...-.
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 444455555441 1111222222222222222222222 36777888899999999998888754322 2222222
Q ss_pred HHHHH--HHhcCCHHHHHHHHHH
Q 011323 344 SLMGA--CSNAKNWQKALELYEH 364 (488)
Q Consensus 344 ~l~~~--~~~~g~~~~a~~~~~~ 364 (488)
..+.. ....|+...+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 22222 2356777776665544
No 297
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.78 E-value=5 Score=38.37 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 011323 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (488)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 222 (488)
+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|..
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHh
Confidence 4455555544433322 334455555555555555555555544
No 298
>PRK09687 putative lyase; Provisional
Probab=90.73 E-value=11 Score=33.17 Aligned_cols=235 Identities=13% Similarity=0.048 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----hHHHHHHHHHHHcCCCCCHH
Q 011323 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEPNVH 163 (488)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~ 163 (488)
..+|.......+.++...|.. .+...+..+.. .++...-...+.++++.|+. +++...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 345666666666666666543 33333333433 23455555556666666653 3455666555333 45555
Q ss_pred HHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHH
Q 011323 164 TYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (488)
+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+... +|...-.
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-----~~~~VR~ 177 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD-----PNGDVRN 177 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-----CCHHHHH
Confidence 555555555443321 122333322222 2344555556666666665 3444444444431 2322333
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011323 239 ALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (488)
Q Consensus 239 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (488)
..+.++.+.+ +...+...+..+.. .++..+....+.++.+.++. .+...+-+..+.+ + .....+.++...
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhc
Confidence 3333444332 12334444444432 33455566666666666663 3444444444432 1 123455555666
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (488)
|+. +|...+..+.+.. +|..+-...+.++
T Consensus 249 g~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 249 GDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred CCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 653 4555555555432 2444444444433
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.58 E-value=0.32 Score=26.55 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhcCCHH
Q 011323 411 TYSILLVACERKDDVE 426 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~ 426 (488)
.|..+...+...|+++
T Consensus 15 a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 15 AYNNLANLYLNQGDYE 30 (34)
T ss_pred HHHHHHHHHHHCcCHH
Confidence 3333333333333333
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.55 E-value=0.73 Score=24.90 Aligned_cols=27 Identities=30% Similarity=0.150 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+|..+...+...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 444555555555555555555555554
No 301
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.45 E-value=21 Score=35.93 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=78.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhcCChh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 109 (488)
+.|.+.|++++|.+-|-+.... ..+..+. .-+.....+.+-..+++.+-+ .+...-..|+..|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~--le~s~Vi-----~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF--LEPSEVI-----KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc--CChHHHH-----HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 4555899999999999876543 2333222 223444555565666655432 33444567888999999888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
+-.+..+... .|.. ..-....+..+.+.+-.++|.-+-..... +......++ -..+++++|++.+..+
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 7766665443 2211 11233455666666666666555444321 333333333 3456677777776655
No 302
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.41 E-value=6.6 Score=31.91 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=25.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
.++.+.+.++.|+.--...++.+ +........-..+|.+...+++|++-|+.+.+.
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34444455555554444444433 112222223344455555555555555555544
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.39 E-value=7.7 Score=30.78 Aligned_cols=134 Identities=14% Similarity=0.233 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
+.++.+.+.+++|+...+..++..+.+.|++.....+ ...++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 3344445556666666666666666666665443333 333334444333322222221 222223322222221
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 193 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
=...+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..+++....
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHK------VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC------cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 001234455556666666666666655321 1112223445555555555444444444433
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.33 E-value=6.2 Score=34.48 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 400 (488)
+.++++.++..=++.|+-||..+++.++..+.+.+++.+|.++.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555555444443
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.32 E-value=5.8 Score=34.64 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011323 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 296 (488)
++++++.++..=.+.|+-||..+++.+++.+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555544444433
No 306
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.58 E-value=5.8 Score=28.14 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
+..+-++.+....+.|++.+..+.+++|.+.+++..|+++++-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666666666666653
No 307
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.57 E-value=12 Score=31.92 Aligned_cols=181 Identities=13% Similarity=0.140 Sum_probs=107.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---------CCCHHHHHHHHHHHHhc
Q 011323 37 RQGRISECIDLLEDMERKGLL--DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---------NPTLSTFNMLMSVCASS 105 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~ 105 (488)
+..++++|+.-|+..++.... .|.--...-++.+..+.+++++....|.++. .-+..+.|+++...+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 567999999999998876421 2332333445566667788888777776543 23455778888887777
Q ss_pred CChhHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CC------CCCHHHHHHHH
Q 011323 106 KDSEGAFQVLRLVQE----A-GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI------EPNVHTYGALI 169 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~------~~~~~~~~~l~ 169 (488)
.+.+-..+.++.-.. . +-+.--.|-..|...|...+.+.+..++++++... |- ..=...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 776665555543221 1 10111223445677777778888888888777542 10 11234566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHH-----HccCCHHHHHH
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITAC-----GQSGAVDRAFD 218 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~-----~~~g~~~~a~~ 218 (488)
..|....+-.+...+|++..... -.|.+... .+|+-| .+.|++++|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 77777777777777777765331 13443332 334433 34566766554
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.17 E-value=1.1 Score=24.10 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=13.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+..+...+...|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555555555555555544
No 309
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.81 E-value=2.1 Score=35.09 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC------CCCHHHHHHHHHH
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTLSTFNMLMSV 101 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~ 101 (488)
-.+++.|++.+++.+|+...++-.+.. |.+......+.+++.-.|++++|..-++.+. .+....|..+|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 346788999999999999999988887 7787777788888888899999988776543 1334466666554
No 310
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=88.74 E-value=0.39 Score=26.19 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHhcCChhHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGA 111 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a 111 (488)
|..+|+.+...+...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444444
No 311
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.62 E-value=5.2 Score=31.91 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=8.2
Q ss_pred CCCcHHHHHHHHHHHhh
Q 011323 440 VIPNLVMFKCIIGMCSR 456 (488)
Q Consensus 440 ~~~~~~~~~~li~~~~~ 456 (488)
..|+..+|+.-+.+..+
T Consensus 109 ~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 109 EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp H-TT-HHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHh
Confidence 44566666655555443
No 312
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.53 E-value=13 Score=31.01 Aligned_cols=64 Identities=14% Similarity=0.000 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
...+......+...+.+..+...+...... ........+......+...++...+.+.+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555555566666665555555431 1123334444444455555555566665555543
No 313
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.29 E-value=23 Score=33.48 Aligned_cols=161 Identities=9% Similarity=0.109 Sum_probs=65.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (488)
...+++..+.++-.+.-++.+..+|..-|- +...+..++++|... ..+.-..++.++.+..+. |.+.-..|+..|.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 344444444444444444444444444332 334444445544444 334444444444443221 2222223333332
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCC
Q 011323 351 NAKNWQKALELYEHMKSIKLK-----PTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDD 424 (488)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~ 424 (488)
+ ++.+.+..+|..+...-++ .-...|..+...- ..+.+..+.+..++.. .|...-...+.-+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 2 4444444444444322111 0011222222211 2334444444444432 2222233344444455555555
Q ss_pred HHHHHHHHHHHHHc
Q 011323 425 VEVGLMLLSQAKED 438 (488)
Q Consensus 425 ~~~a~~~~~~~~~~ 438 (488)
+.+|++++..+.+.
T Consensus 221 ~~eai~Ilk~il~~ 234 (711)
T COG1747 221 WTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHHhhh
Confidence 55555555544443
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.05 E-value=1.9 Score=23.22 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=8.6
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHH
Q 011323 132 TLITTCAKSGKVDAMFEVFHEMV 154 (488)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~ 154 (488)
.+..++...|++++|++.|++.+
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHH
Confidence 33333333344444444433333
No 315
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.44 E-value=23 Score=32.42 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=32.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
.++..+...+.+.|.++.|...+..+...+... .+.+...-+...-..|+..+|...++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555556666666666666666555432111 223333344444555555555555555544
No 316
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.18 E-value=26 Score=32.81 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=46.9
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 011323 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (488)
Q Consensus 278 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (488)
.+...|+++.+...+...... +.....+..+++....+.|+++.|...-..|....++ ++..........-..|-+++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 344556666666665544332 1123445566666666666666666666665554433 33333333333334455666
Q ss_pred HHHHHHHHHhCC
Q 011323 358 ALELYEHMKSIK 369 (488)
Q Consensus 358 a~~~~~~~~~~~ 369 (488)
+...|+++...+
T Consensus 410 ~~~~wk~~~~~~ 421 (831)
T PRK15180 410 SYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccC
Confidence 666666655443
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.15 E-value=24 Score=32.31 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 332 (488)
..++..++..+.+.|.++.|...+..+...+... ++...-.-+...-..|+..+|+..++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777777777777777766643111 223333344455566777777777766665
No 318
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.84 E-value=8.9 Score=27.10 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011323 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119 (488)
Q Consensus 40 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (488)
..++|..+-+.+...+ ........+-......+|++++|..+.+....||...|.++... +.|--+++..-+..|.
T Consensus 20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 4567777777766554 22333333344445566788888888877777777777666543 3455555555555666
Q ss_pred HcCCCCCHHHH
Q 011323 120 EAGLKADCKLY 130 (488)
Q Consensus 120 ~~~~~~~~~~~ 130 (488)
..| .|....|
T Consensus 96 ~sg-~p~lq~F 105 (115)
T TIGR02508 96 ASG-DPRLQTF 105 (115)
T ss_pred hCC-CHHHHHH
Confidence 555 4444333
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.79 E-value=36 Score=34.07 Aligned_cols=154 Identities=10% Similarity=0.085 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCC
Q 011323 30 HSYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (488)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (488)
..++-+++.+.+++|++........- +. ..-....++.-+...|++++|-...-.+...+...|..-+..+...++
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 35667889999999999887654332 21 222333344444566889999888888887788888877777777766
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH---------cCC-------CCCHHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN---------AGI-------EPNVHTYGALIDG 171 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~-------~~~~~~~~~l~~~ 171 (488)
......+ +.......+...|..++..+.. .+...-.++...... ... .-+...-..|+..
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 6543332 2221112345567777666655 222222222111100 000 1122223347777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011323 172 CAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~ 189 (488)
|...+++..|++++-..+
T Consensus 515 Yl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHccChHHHHHHHHhcc
Confidence 777888888887776655
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=86.52 E-value=2.5 Score=22.56 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=6.9
Q ss_pred HHHHHcCCHhHHHHHHHHH
Q 011323 135 TTCAKSGKVDAMFEVFHEM 153 (488)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~ 153 (488)
..+...|++++|++.|++.
T Consensus 9 ~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 9 QAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 3333333333333333333
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.40 E-value=8.1 Score=31.58 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHccCChHHH
Q 011323 247 AGQVDRAREVYKMIHKY---NIKGTPEVYTIAINCCSQTGDWEFA 288 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 288 (488)
..+.+++..++-...+. +-.+++..+..|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555555544332 1134555566666666666655554
No 322
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.39 E-value=30 Score=32.77 Aligned_cols=182 Identities=12% Similarity=0.088 Sum_probs=121.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011323 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (488)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 169 (488)
.|..+.-+++..+..+....-...+-.+|..-| .+-..|..++++|... ..+.-..+|+++.+..+. |+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 466677888888888888888888888888764 4667888899999888 567888999988887432 444444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHH
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSKNVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 244 (488)
..|- .++.+.+...|.+...+-++. -...|..+... -..+.+....+...+... .+...-...+.-+-.-|
T Consensus 140 ~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHh
Confidence 5444 488888888888876543221 12244444432 135567777777666554 23333344555566677
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (488)
....++.+|++++..+.+.+ ..|......++..+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 88889999999999888776 445555555554433
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.98 E-value=7 Score=32.24 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVA 418 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~ 418 (488)
+.+..++.+.+.+.+.+++...+.-.+.+ +-|..+-..++..|+-.|++++|..-++-.-+. ...+...+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556677888899999999888777664 445666677889999999999998777765442 133446677777654
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.93 E-value=2.3 Score=24.11 Aligned_cols=28 Identities=29% Similarity=0.209 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+++.+...|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777778888888888888777654
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.69 E-value=15 Score=28.44 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=34.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 103 ASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
...++.+++..+++.|.-. .|+.. .-..-...+...|++.+|..+|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3467888888888877653 34322 2222234456788888888888888765
No 326
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.65 E-value=16 Score=29.84 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=53.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 011323 314 AGHAGKVEAAFEILQEAKNQGISV----GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (488)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 389 (488)
+...|++++|..-|.......... ....|..-..++.+.+.++.|+.-....++.+ +-......--..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 455677777777777666643211 12334444556667777777777776666654 1112222223446667777
Q ss_pred hhHHHHHHHHHHhCCCCCCH
Q 011323 390 LPKTMEVLSDMKSLGLCPNT 409 (488)
Q Consensus 390 ~~~a~~~~~~~~~~~~~p~~ 409 (488)
+++|+.-|+.+.+. .|..
T Consensus 184 ~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 184 YEEALEDYKKILES--DPSR 201 (271)
T ss_pred HHHHHHHHHHHHHh--Ccch
Confidence 77777777777763 4443
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.62 E-value=2.5 Score=24.74 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=12.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHH
Q 011323 415 LLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555553
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.56 E-value=0.38 Score=37.33 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 011323 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (488)
Q Consensus 310 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 389 (488)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555556666666666666665554455666666666666666555555555411 11222345555556666
Q ss_pred hhHHHHHHHHH
Q 011323 390 LPKTMEVLSDM 400 (488)
Q Consensus 390 ~~~a~~~~~~~ 400 (488)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666555543
No 329
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.40 E-value=24 Score=30.76 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHH
Q 011323 302 PDEVFLSALIDFAGH-A-GKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTM 377 (488)
Q Consensus 302 ~~~~~~~~l~~~~~~-~-g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 377 (488)
-|..+...++..... . .....-.++.+.+... +..++..+...++..++..+++.+-.++++..... +...|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 355666666655543 1 1222333333333322 23556666677777777777777777777665543 445566777
Q ss_pred HHHHHHHHcCCChhHHHHHHHH-----HHhCCCCCCHHHHHHHHH
Q 011323 378 NALITALCDGDQLPKTMEVLSD-----MKSLGLCPNTITYSILLV 417 (488)
Q Consensus 378 ~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~p~~~~~~~l~~ 417 (488)
..+++...+.|+..-..++..+ +.+.|+..+...-..+-.
T Consensus 242 ~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 7777777777776655555544 234445544444444433
No 330
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.40 E-value=2 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKG 55 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~ 55 (488)
.+.....++..|+.+.|.++++++...+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3567788999999999999999999765
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.95 E-value=2.8 Score=23.71 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555554443
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.94 E-value=25 Score=30.59 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCcHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMF 447 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 447 (488)
.+++.....|..+|.+.+|.++-++.+... +.+...+..++..+...|+--.+.+.++++.+ .|+..+...+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 345566678889999999999999988753 56778888999999999998888887777653 2666665543
No 333
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.64 E-value=18 Score=31.29 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=57.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK---- 174 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 174 (488)
|.+++..+++.+++...-+--+.--+........-|-.|++.+.+..+.++-...++..-..+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5778888888888776544432211223344555566678888888888888877765333444557777666654
Q ss_pred -cCCHHHHHHHH
Q 011323 175 -AGQVAKAFGAY 185 (488)
Q Consensus 175 -~~~~~~a~~~~ 185 (488)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 68888887776
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.64 E-value=21 Score=29.31 Aligned_cols=72 Identities=8% Similarity=-0.022 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhHHHHHHHHHHccCCHHHH
Q 011323 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNALITACGQSGAVDRA 216 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a 216 (488)
+.|.+.|-.+...+.--++.....|...|. ..+.++++.++-...+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 566666666666554445555555555554 55677777776666543 2245667777777777777777665
No 335
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=84.43 E-value=17 Score=31.38 Aligned_cols=87 Identities=11% Similarity=0.002 Sum_probs=52.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH---- 316 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 316 (488)
|++++..+++.+++.+.-...+..-+..+.+...-|-.|.+.+.+..+.++-..-.+..-+-+...|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666777777777666554443322334456666666677777777777777666554322233446666665543
Q ss_pred -cCCHHHHHHHH
Q 011323 317 -AGKVEAAFEIL 327 (488)
Q Consensus 317 -~g~~~~a~~~~ 327 (488)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 47777777665
No 336
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.08 E-value=46 Score=32.87 Aligned_cols=181 Identities=14% Similarity=0.103 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKAG- 176 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 176 (488)
...|.+.++.....|. .........+.. ++...+.+.|...|+...+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 3567777777776652 122222222222 3355677888888877765 33 2234445555555432
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc-cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH----hc
Q 011323 177 ----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA----NA 247 (488)
Q Consensus 177 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 247 (488)
+.+.|+.+|.+.-+.| .|+....-..+..... ..+...|.++|......+ .++ .+-.+..+|. ..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~--A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HIL--AIYRLALCYELGLGVE 377 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChH--HHHHHHHHHHhCCCcC
Confidence 5566777777777666 3444443333332222 234567777777665532 111 2111221111 22
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011323 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (488)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 300 (488)
.+...|..++++.-..+ .+...--...+..+.. +.++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 35666777777666666 3322222222233333 555555555555554443
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.18 E-value=2.4 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=9.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHH
Q 011323 135 TTCAKSGKVDAMFEVFHEMVN 155 (488)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~ 155 (488)
.++.+.|+.++|.+.|+++.+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 333344444444444444443
No 338
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.60 E-value=14 Score=25.94 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (488)
Q Consensus 287 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 331 (488)
++.+-++.+....+.|++....+.+.+|.+.+++..|..+|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555666666666666666666666666665554
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.90 E-value=4.9 Score=21.47 Aligned_cols=27 Identities=30% Similarity=0.234 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777778888888888877765
No 340
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=81.81 E-value=5.9 Score=27.66 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=26.1
Q ss_pred cccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (488)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~ 55 (488)
..|.+..........++..|++++|++.+-++.+.+
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456777777777788888888888888888888775
No 341
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.59 E-value=0.61 Score=36.16 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=23.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33334444444444444444443333344444555555555544444444444
No 342
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.79 E-value=6.5 Score=26.38 Aligned_cols=47 Identities=6% Similarity=-0.076 Sum_probs=31.6
Q ss_pred cCCChhHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHhhcCCHHHHHHHH
Q 011323 386 DGDQLPKTMEVLSDMKSLGLCP-N-TITYSILLVACERKDDVEVGLMLL 432 (488)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~ 432 (488)
...+.++|+..|+..++.-..| + ..++..++.+++..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888776542222 2 345667778888888887776654
No 343
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.94 E-value=31 Score=28.11 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=39.8
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
..+...|++++|..-++........-.....+-..+.+.....|.++.|+..++.....+. .......-.+.+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 3445555666665555554431000000001111223344455555555555555544332 11222333444555555
Q ss_pred hHHHHHHHHHHHhC
Q 011323 285 WEFACSVYDDMTKK 298 (488)
Q Consensus 285 ~~~a~~~~~~~~~~ 298 (488)
-++|..-|.+....
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 55555555555554
No 344
>PRK11619 lytic murein transglycosylase; Provisional
Probab=79.77 E-value=72 Score=32.18 Aligned_cols=23 Identities=4% Similarity=0.137 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 011323 29 LHSYNRLIRQGRISECIDLLEDM 51 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~ 51 (488)
+......++.|+...+.++...+
T Consensus 37 f~~A~~a~~~g~~~~~~~~~~~l 59 (644)
T PRK11619 37 YQQIKQAWDNRQMDVVEQLMPTL 59 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhc
Confidence 33445555777777776666655
No 345
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=79.46 E-value=55 Score=30.96 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=29.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 011323 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (488)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (488)
..+.++...++++.+...|.......++.-...|.+.|..
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 3577888888888888777666666677777777777654
No 346
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.94 E-value=12 Score=33.20 Aligned_cols=94 Identities=18% Similarity=0.059 Sum_probs=61.4
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 011323 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (488)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (488)
.+.|++.|.+++|+..|..-...... +.+++..-..+|.+...+..|..-.......+ ..-...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 45788999999999998876664322 77778888888888888887777666665543 11233444444444455666
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 011323 356 QKALELYEHMKSIKLKPT 373 (488)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~ 373 (488)
.+|.+-++...+. .|+
T Consensus 182 ~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHhHHHHHhh--Ccc
Confidence 6666666665554 454
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.92 E-value=75 Score=31.92 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHh-hhHHHHHHHHHhhhCC----CCCHH-----HHHHHHHHHHhcCChh
Q 011323 42 SECIDLLEDMERKGLLDM--DKVYHARFFNVCK-SQKAIKEAFRFFKLVP----NPTLS-----TFNMLMSVCASSKDSE 109 (488)
Q Consensus 42 ~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~----~~~~~-----~~~~l~~~~~~~~~~~ 109 (488)
..|++.++-+.+....++ ...++..++.++. .-.++++|...+++.. +++.. +...++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 346777777774322222 2345555555554 4567899999988763 22221 2234556666666555
Q ss_pred HHHHHHHHHHHcC----CCCCHHHHHHH-HHHHHHcCCHhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hcCCHH
Q 011323 110 GAFQVLRLVQEAG----LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAG---IEPNVHTYGALIDGCA--KAGQVA 179 (488)
Q Consensus 110 ~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~ 179 (488)
|...++...+.- ..+-...|..+ +..+...++...|.+.++.+.... ..|...++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 888888766432 12233344444 333334479999999998877542 2445555556665544 345566
Q ss_pred HHHHHHHHHHhCC---------CCCCHhHHHHHHHHH--HccCCHHHHHHHHHHH
Q 011323 180 KAFGAYGIMRSKN---------VKPDRVVFNALITAC--GQSGAVDRAFDVLAEM 223 (488)
Q Consensus 180 ~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~ 223 (488)
.+.+.++.+.... ..|-..+|..+++.+ ...|+++.+.+.++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777776663221 134566677776654 4567776666665554
No 348
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.82 E-value=13 Score=22.89 Aligned_cols=38 Identities=11% Similarity=0.071 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 011323 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (488)
Q Consensus 414 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 453 (488)
.+.-++.+.|++++|.++.+.+.+ +.|+......|-..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 345566677777777777777766 44666555555444
No 349
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.36 E-value=80 Score=31.89 Aligned_cols=182 Identities=9% Similarity=-0.032 Sum_probs=91.2
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011323 247 AGQVDRAREVYKMIHKYN-IKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 323 (488)
..+.+.|...+....... ..+. ..+...+.......+...++...+....... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345566777776653332 1111 1122333322233222344444444433221 1333344444444566777766
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------CCCC--------CCHH------HH
Q 011323 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS------------IKLK--------PTVS------TM 377 (488)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~~~--------~~~~------~~ 377 (488)
...+..|.... .-...-.--+.+++...|+.++|...|+.+.. .|.+ |... .-
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 410 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPE 410 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChH
Confidence 66666654432 22334444555665666777777777766532 1111 0000 00
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 011323 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (488)
Q Consensus 378 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 434 (488)
..-+..+...|....|...|..+.+. .+......+.......|.++.++.....
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 11234456678888888888777763 3444555666666677777777665543
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.07 E-value=3.7 Score=20.56 Aligned_cols=19 Identities=26% Similarity=0.121 Sum_probs=9.5
Q ss_pred HHHHHHhhcCCHHHHHHHH
Q 011323 414 ILLVACERKDDVEVGLMLL 432 (488)
Q Consensus 414 ~l~~~~~~~g~~~~a~~~~ 432 (488)
.+..++...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444455555555555544
No 351
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.81 E-value=35 Score=27.46 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----C-------HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----K-------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (488)
++|+.-|++....+ |....++..+..+|...+ + +++|.+.|+..... +|+...|+.-+....
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~---- 124 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA---- 124 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH----
Confidence 44455555555432 223456666666665443 2 34455555555544 788888887776653
Q ss_pred HHHHHHHHHHHHhCC
Q 011323 178 VAKAFGAYGIMRSKN 192 (488)
Q Consensus 178 ~~~a~~~~~~~~~~~ 192 (488)
+|-++..++.+.+
T Consensus 125 --kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 --KAPELHMEIHKQG 137 (186)
T ss_dssp --THHHHHHHHHHSS
T ss_pred --hhHHHHHHHHHHH
Confidence 3555555555543
No 352
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.70 E-value=22 Score=25.20 Aligned_cols=15 Identities=7% Similarity=0.222 Sum_probs=6.4
Q ss_pred HHcCCHhHHHHHHHH
Q 011323 138 AKSGKVDAMFEVFHE 152 (488)
Q Consensus 138 ~~~~~~~~a~~~~~~ 152 (488)
...|++++|..+.+.
T Consensus 50 mNrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 50 MNRGDYQSALQLGNK 64 (115)
T ss_pred HccchHHHHHHhcCC
Confidence 334444444444333
No 353
>PRK09687 putative lyase; Provisional
Probab=77.56 E-value=50 Score=29.14 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=11.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHh
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..+.++...|.. +|+..+..+.+
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344455555553 45555555443
No 354
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.53 E-value=24 Score=25.42 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011323 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119 (488)
Q Consensus 40 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (488)
..++|-.+.+.+...+ ........+.+.....+|++++|+..=.....||...|.++.. .+.|-.+++...+.++.
T Consensus 21 cH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 21 CHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp -HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 4566666666666554 2222333333333445566666633333344555555544432 23455555555555554
Q ss_pred HcC
Q 011323 120 EAG 122 (488)
Q Consensus 120 ~~~ 122 (488)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 433
No 355
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.44 E-value=11 Score=28.32 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhh
Q 011323 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85 (488)
Q Consensus 43 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 85 (488)
.+.++|..|..+++....+.++...+..+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555554444444444444444445555555554443
No 356
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.14 E-value=8.8 Score=20.40 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMVN 155 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (488)
|..+...+...|++++|.+.|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555443
No 357
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.73 E-value=1.6e+02 Score=34.37 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=91.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 97 MLMSVCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
.+..+-.+++.+.+|...++.-..... ......|..+...|+..++++...-+..... .+...+.. +.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~q-il~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQ-ILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHH-HHHHHh
Confidence 344455667788888888877311111 1122234444558888888888877766421 12223333 344566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHH-HHHHHHhcCCHHHH
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA-LMKACANAGQVDRA 253 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a 253 (488)
.|++..|...|+.+...+ ++...+++.++......|.++.+.-..+-.... ..+....++. -+.+.-+.++++..
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~---~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN---RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc---cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 889999999999998774 344777888888777888888777766665543 1222222222 23344566777766
Q ss_pred HHHHH
Q 011323 254 REVYK 258 (488)
Q Consensus 254 ~~~~~ 258 (488)
.....
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66555
No 358
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=76.12 E-value=1.6e+02 Score=34.26 Aligned_cols=148 Identities=12% Similarity=0.105 Sum_probs=98.5
Q ss_pred HHHHHHhhhHHHHHHHHHhhhCC----CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 011323 66 RFFNVCKSQKAIKEAFRFFKLVP----NP--TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (488)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (488)
.+..+..+.+.+.+|+-.+++-. +. ....|..+...|...++++...-+...-.. .|+ .+. -+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHh
Confidence 45556778899999999999842 11 222445555699999999988777664111 222 222 3445668
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH-HHHHHccCCHHHHHH
Q 011323 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL-ITACGQSGAVDRAFD 218 (488)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~ 218 (488)
.|++..|...|+.+.+.+ ++...+++-++......|.++.+.-..+-..... .+....++.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999874 3347778877777777888888777666555432 3334444433 344567788887776
Q ss_pred HHH
Q 011323 219 VLA 221 (488)
Q Consensus 219 ~~~ 221 (488)
.+.
T Consensus 1540 ~l~ 1542 (2382)
T KOG0890|consen 1540 YLS 1542 (2382)
T ss_pred hhh
Confidence 655
No 359
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.65 E-value=77 Score=27.70 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=13.7
Q ss_pred HHHHHHHcCCChhHHHHHHHH
Q 011323 379 ALITALCDGDQLPKTMEVLSD 399 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~ 399 (488)
-++..+.+.|.+.+|+.+...
T Consensus 130 Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHH
Confidence 456667777777777765443
No 360
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.38 E-value=1.4e+02 Score=30.74 Aligned_cols=229 Identities=12% Similarity=0.047 Sum_probs=122.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHH-HHHHcCCHhHHHHHHHHHHHc----CCCCCHHHHHHH
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCK-------LYTTLIT-TCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYGAL 168 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 168 (488)
......++++|..++.++...-..|+.. .++.+-. .....|+++.|.++-+...+. -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 4556789999999998876542232221 3443332 334568899999888876653 123455667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH---HHHH--HHHHccCCHH--HHHHHHHHHhhCCCCCCC----CcchH
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF---NALI--TACGQSGAVD--RAFDVLAEMNAEVHPVDP----DHITI 237 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~ll--~~~~~~g~~~--~a~~~~~~~~~~~~~~~~----~~~~~ 237 (488)
..+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|+.. +.+..+.........-.| -..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 78888899999999888777654222233332 2222 2345566433 333334333332111111 12233
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHhCCC----CCCHHHHHHH
Q 011323 238 GALMKACANA-GQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGV----IPDEVFLSAL 310 (488)
Q Consensus 238 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l 310 (488)
..++.++.+. +...++..-++........+-.. .+..++......|+.++|...++++..... .++..+....
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4444444441 11122222222222222111111 233677888899999999999988776322 2333333333
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 011323 311 IDF--AGHAGKVEAAFEILQE 329 (488)
Q Consensus 311 ~~~--~~~~g~~~~a~~~~~~ 329 (488)
+.. ....|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 332 3456777777766655
No 361
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.17 E-value=35 Score=23.56 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHHH
Q 011323 318 GKVEAAFEILQEAK 331 (488)
Q Consensus 318 g~~~~a~~~~~~~~ 331 (488)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 362
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.10 E-value=46 Score=24.90 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 011323 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (488)
Q Consensus 392 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 453 (488)
+..+-+..+....+.|++.....-+++|.+.+|+..|.++|+-++.. ..+....|..++.-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 44455556666667888888888888888888888888888776654 33333356666654
No 363
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.77 E-value=82 Score=27.69 Aligned_cols=86 Identities=13% Similarity=-0.034 Sum_probs=48.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc------C-----CHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS------G-----KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~-----~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (488)
++...+-=..++-....+...+...+....++...+.++... | -..+|+++|.-+.... -...+-..
T Consensus 94 ~dYl~KPvt~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hk--gk~v~~~~ 171 (361)
T COG3947 94 DDYLPKPVTPEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHK--GKEVTSWE 171 (361)
T ss_pred HhhccCCCCHHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhc--CCcccHhH
Confidence 334444444455555555555443344456677777766521 2 1357888998887752 22334445
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 011323 168 LIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~ 186 (488)
++.++....+..+|...+.
T Consensus 172 ~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 172 AIEALWPEKDEKKASSLLH 190 (361)
T ss_pred HHHHHccccchhhHHHHHH
Confidence 6666666666666655543
No 364
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.69 E-value=1.4e+02 Score=30.31 Aligned_cols=96 Identities=7% Similarity=-0.036 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHhhhCCC--C---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011323 72 KSQKAIKEAFRFFKLVPN--P---TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (488)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 146 (488)
.+.+.+++|+..-+.... + -...+...+..+...|++++|-...-.|.. -+..-|...+..+...++....
T Consensus 367 l~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccchh
Confidence 344666666666655431 1 223555666666666667666666666653 2445555555555555544332
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 147 FEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
. .-+.......+...|..++..+..
T Consensus 443 a---~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 A---PYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred h---ccCCCCCcccCchHHHHHHHHHHH
Confidence 2 222222112345566666666655
No 365
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.63 E-value=22 Score=21.20 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=17.9
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 011323 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 452 (488)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555555555555555555555555554443
No 366
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.45 E-value=83 Score=27.64 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=33.2
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 011323 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYD 293 (488)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 293 (488)
.++..+....+..++..+++..-.++++..... +...|...|..+|....+.|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 344445555555666666666655555544433 333455555556666666665554444443
No 367
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.11 E-value=1.5e+02 Score=30.54 Aligned_cols=78 Identities=10% Similarity=0.158 Sum_probs=50.2
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCch-HHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhc
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (488)
.....|+.++..|+|+.|++.-..- |.. ......-+.++...+++..|.+.|.+. ...+..+.--+...
T Consensus 360 E~R~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~ 429 (911)
T KOG2034|consen 360 EARDVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEI 429 (911)
T ss_pred chHHHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhc
Confidence 4567899999999999999885432 121 123334455667778888888888776 34455555555555
Q ss_pred CChhHHHHHH
Q 011323 106 KDSEGAFQVL 115 (488)
Q Consensus 106 ~~~~~a~~~~ 115 (488)
++.+ ++..|
T Consensus 430 ~~~~-~L~~~ 438 (911)
T KOG2034|consen 430 NQER-ALRTF 438 (911)
T ss_pred CCHH-HHHHH
Confidence 5555 44443
No 368
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.59 E-value=56 Score=25.31 Aligned_cols=82 Identities=5% Similarity=0.146 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAG-----IEPNVHTYGALIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNA 202 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (488)
..+.++......+++.-...+++.+.... -..+...|.+++.+..+..- ---+..+|.-|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34556666566666666666666553211 02345566677776654444 3345566666666666677777777
Q ss_pred HHHHHHcc
Q 011323 203 LITACGQS 210 (488)
Q Consensus 203 ll~~~~~~ 210 (488)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77766543
No 369
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=67.07 E-value=1.5e+02 Score=29.94 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCC
Q 011323 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ-------VAKAFGAYGIMRSKN 192 (488)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~ 192 (488)
..|. ++-.|.++|++++|.++....... .......+-..+..|....+ -++...-|++.....
T Consensus 113 p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 113 PIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred ccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 3443 667788999999999999554433 34556677777888876532 245666677666553
No 370
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.78 E-value=1.1e+02 Score=28.31 Aligned_cols=97 Identities=11% Similarity=0.000 Sum_probs=52.3
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-----------------------------CCCHHHHHHHH---HHHHhc
Q 011323 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-----------------------------NPTLSTFNMLM---SVCASS 105 (488)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------------------------~~~~~~~~~l~---~~~~~~ 105 (488)
|........+..++..+|+.+.|.++.+++. ..|...|.++. ..+.+.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 5555555555566666666655555544331 12444444433 345666
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHhHHHHHHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA-KSGKVDAMFEVFHEMV 154 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 154 (488)
|-+..|+++-+.+...+..-|+.....+|+.|+ +.++++--+++.+...
T Consensus 117 G~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 117 GCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 666777766666666553335555555555553 4455555555555544
No 371
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.17 E-value=1.8e+02 Score=30.39 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=36.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHH----HHHH-HHHHhhhHHHHHHHHHhhhCC
Q 011323 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----HARF-FNVCKSQKAIKEAFRFFKLVP 88 (488)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~l-~~~~~~~~~~~~A~~~~~~~~ 88 (488)
-+..|++..++++|+.+.+.....+ |..... +... +...-.++++++|.+.|+++.
T Consensus 313 qi~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 313 QIQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred HHHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 3456778888999999988766543 222211 1111 223456789999999998875
No 372
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.50 E-value=65 Score=24.96 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCC-hhHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALITALCDGDQ-LPKTMEVLSDMKSLGLCPNTITYSI 414 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~ 414 (488)
..+.++......+++.....+++.+.... -..+...|.+++.+..+..- ---+..+|.-|.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34556665566666666666665553210 02344566777777655544 2345566666666666777777777
Q ss_pred HHHHHhhc
Q 011323 415 LLVACERK 422 (488)
Q Consensus 415 l~~~~~~~ 422 (488)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77777654
No 373
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=63.78 E-value=1.1e+02 Score=27.59 Aligned_cols=59 Identities=7% Similarity=0.051 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011323 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (488)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 206 (488)
-+.++++.++.. +.+......++..+.+..+.+...+.++++.... +-+...|...+..
T Consensus 50 klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 50 KLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence 344455544442 2344445555555555555555555555555442 2234444444443
No 374
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.45 E-value=54 Score=23.71 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
.||...|.+|.. .+.|-.+++...+.++...|
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344444443322 34445555555554444443
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.98 E-value=18 Score=18.03 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=5.6
Q ss_pred HHHcCCHhHHHHHHH
Q 011323 137 CAKSGKVDAMFEVFH 151 (488)
Q Consensus 137 ~~~~~~~~~a~~~~~ 151 (488)
+...|+++.|...++
T Consensus 11 ~~~~~~~~~a~~~~~ 25 (34)
T smart00028 11 YLKLGDYDEALEYYE 25 (34)
T ss_pred HHHHhhHHHHHHHHH
Confidence 333333333333333
No 376
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.73 E-value=29 Score=22.11 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMV 154 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (488)
.-.++.++...|++++|.+.++.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555555443
No 377
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.73 E-value=1.3e+02 Score=28.29 Aligned_cols=17 Identities=18% Similarity=0.419 Sum_probs=8.5
Q ss_pred HHHHHhcCCHHHHHHHH
Q 011323 241 MKACANAGQVDRAREVY 257 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~ 257 (488)
+...+..|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 34445556655544444
No 378
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=62.65 E-value=1.8e+02 Score=29.36 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=38.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHc---C
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALCD---G 387 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 387 (488)
..+.-.|+++.|++.+.. ..+...+.+++...+..|.-.+-..... ..+.... -.|....+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 344557889998888876 2233556666665554443222111111 2222111 01122456677777764 4
Q ss_pred CChhHHHHHHHHHHhC
Q 011323 388 DQLPKTMEVLSDMKSL 403 (488)
Q Consensus 388 ~~~~~a~~~~~~~~~~ 403 (488)
.++.+|++.+--+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 5677777777766543
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.43 E-value=30 Score=23.34 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=6.1
Q ss_pred HHHHHHHhcCCHHHH
Q 011323 344 SLMGACSNAKNWQKA 358 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a 358 (488)
.++.+|+..|+++++
T Consensus 48 ~l~qA~~e~Gkyr~~ 62 (80)
T PF10579_consen 48 YLIQAHMEWGKYREM 62 (80)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 380
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.82 E-value=1.1e+02 Score=26.77 Aligned_cols=201 Identities=15% Similarity=0.108 Sum_probs=103.2
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchH------HHHHHHHHHHhhhHHHHHHHHHhh-------hCC-CCC
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK------VYHARFFNVCKSQKAIKEAFRFFK-------LVP-NPT 91 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~-------~~~-~~~ 91 (488)
...+...+.+.+.+++++|++.|.+++..|...+.. .....+..++.+.|+...-.++.. ... +..
T Consensus 4 ~~sle~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~ 83 (421)
T COG5159 4 KSSLELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKI 83 (421)
T ss_pred cchHHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhH
Confidence 345788899999999999999999999887543332 334455666666665544433322 222 223
Q ss_pred HHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHH----HcCCCCC
Q 011323 92 LSTFNMLMSVCAS-SKDSEGAFQVLRLVQEAGLKAD-----CKLYTTLITTCAKSGKVDAMFEVFHEMV----NAGIEPN 161 (488)
Q Consensus 92 ~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~ 161 (488)
.....+++.-+.. ...++.-+.+.....+...+.+ ...-..++..+.+.|++.+|+.+...+. +..-+|+
T Consensus 84 ~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~ 163 (421)
T COG5159 84 TKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKIN 163 (421)
T ss_pred HHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccc
Confidence 3455555554433 2345555555544443221111 1122346677778888888776655443 3333444
Q ss_pred HHHHHHH-HHHHHhcCCHHHHHHHHHHHHh----CCCCCCHhHHHHHHHHH--HccCCHHHHHHHHHHHhhC
Q 011323 162 VHTYGAL-IDGCAKAGQVAKAFGAYGIMRS----KNVKPDRVVFNALITAC--GQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 162 ~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~ 226 (488)
..+...+ -..|..-++..++..-+...+. .-++|-...--.++++- +...++..|...|-+..+.
T Consensus 164 Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 164 LITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred eeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 3332221 1234444444444443333321 12334333333344332 3344566666666555543
No 381
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.18 E-value=28 Score=22.21 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 166 GALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
-.++.+|...|++++|.+.++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555666666666665555554
No 382
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=61.06 E-value=34 Score=25.68 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLR 116 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~ 116 (488)
...|......+-..|++.+|.++|+
T Consensus 99 AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 99 ALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3345556666677777777777765
No 383
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=60.96 E-value=1.2e+02 Score=26.87 Aligned_cols=173 Identities=15% Similarity=0.160 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHH-HHHhcCC-HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcch
Q 011323 159 EPNVHTYGALID-GCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236 (488)
Q Consensus 159 ~~~~~~~~~l~~-~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (488)
.|....++.|.. .+.+.|= ..-|.++|+..... ...+.++.++.+.+.-+.-+++| +|+..+
T Consensus 162 t~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff----------Ppnkrs 225 (412)
T KOG2297|consen 162 TLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF----------PPNKRS 225 (412)
T ss_pred CCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc----------CCcchh
Confidence 344444554443 3334442 34466677666533 23455666665544444433332 455555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH----HHHHHHH
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV----FLSALID 312 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~ 312 (488)
-......+...|--+-..-.-.++.. + .-...-..+..-..+...+++.....++-.+..-.|+.. .|+.+++
T Consensus 226 ~E~Fak~Ft~agL~elvey~~~q~~~-~--a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMs 302 (412)
T KOG2297|consen 226 VEHFAKYFTDAGLKELVEYHRNQQSE-G--ARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMS 302 (412)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHH-H--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhH
Confidence 44454444444432211111111100 0 000122233333344455666666555533333345553 4555655
Q ss_pred HHHhcCCHH-HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 011323 313 FAGHAGKVE-AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 359 (488)
Q Consensus 313 ~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 359 (488)
+-.-+.+-+ -|.+.+++ ...|.-|+.+++..|+.+-..
T Consensus 303 aveWnKkeelva~qalrh---------lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 303 AVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcCChHHHHH
Confidence 433221111 12222322 456778889999999876543
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.83 E-value=53 Score=26.96 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..|++.+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777777777777777777777777776665
No 385
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.74 E-value=85 Score=25.42 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=13.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 011323 346 MGACSNAKNWQKALELYEHMKS 367 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~ 367 (488)
+..|.+.|.+++|.+++++..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3446666666666666666554
No 386
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.63 E-value=69 Score=24.00 Aligned_cols=59 Identities=12% Similarity=0.194 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (488)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (488)
+..+-++.+...++.|++.....-++++-+.+++..|+++|+-++.. ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 44555556666667777777777778888888888888887777643 233333344443
No 387
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.33 E-value=14 Score=32.84 Aligned_cols=92 Identities=12% Similarity=0.025 Sum_probs=41.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHH
Q 011323 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGL 429 (488)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~ 429 (488)
..|.++.|++.|...+..+ ++....|..-...+.+.+....|++=+....+ +.||. ..|-.=-.+..-.|++++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHH
Confidence 3444555555555554443 33334444444445555555555554444443 23331 22222222333345555555
Q ss_pred HHHHHHHHcCCCCcHH
Q 011323 430 MLLSQAKEDGVIPNLV 445 (488)
Q Consensus 430 ~~~~~~~~~~~~~~~~ 445 (488)
..+....+.++.+...
T Consensus 203 ~dl~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 203 HDLALACKLDYDEANS 218 (377)
T ss_pred HHHHHHHhccccHHHH
Confidence 5555555555444443
No 388
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=59.57 E-value=61 Score=23.58 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=18.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH
Q 011323 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (488)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (488)
+++.+.++...++|+++++.|.+.| ..+...
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~ 97 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEE 97 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHH
Confidence 4455566666777777777777666 334433
No 389
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.37 E-value=62 Score=25.14 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=27.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 011323 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (488)
..+.+.|.+++.. -..++..+...++.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344455543332 33344444445444556666666665554444443333334444333
No 390
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=59.27 E-value=2e+02 Score=28.78 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 011323 309 ALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQ------KALELYEHMKSIKLKPTVSTMNAL 380 (488)
Q Consensus 309 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 380 (488)
++..+|...|++..+.++++.+...+ -+.-...+|..++-+.+.|.++ .|...++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 56677777777777777777666542 2233456666666666666543 2222222222 34455566555
Q ss_pred HHHHH
Q 011323 381 ITALC 385 (488)
Q Consensus 381 ~~~~~ 385 (488)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 54433
No 391
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.71 E-value=1.3e+02 Score=26.73 Aligned_cols=72 Identities=13% Similarity=0.206 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----------cCCHHHH
Q 011323 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----------SGAVDRA 216 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------~g~~~~a 216 (488)
.++|+.+.+.++.|.-..+.-+.-.+.+.=.+..++.+++.+.... .-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3466666666666666666666666666666666666666665432 113334333332 4666666
Q ss_pred HHHHHHH
Q 011323 217 FDVLAEM 223 (488)
Q Consensus 217 ~~~~~~~ 223 (488)
+++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 6666543
No 392
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.42 E-value=39 Score=20.76 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=16.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHH
Q 011323 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (488)
Q Consensus 380 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 410 (488)
+.-++.+.|++++|.+..+.+++ +.|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 44556667777777777776665 345543
No 393
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.23 E-value=38 Score=20.22 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=9.5
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHH
Q 011323 141 GKVDAMFEVFHEMVNAGIEPNVHTY 165 (488)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (488)
|-.+++..+++.|.+.|+..+...+
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHH
Confidence 3333333344444333333333333
No 394
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=57.56 E-value=1.8e+02 Score=27.87 Aligned_cols=68 Identities=10% Similarity=0.019 Sum_probs=42.1
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHH-HHhhhHHHHHHHHHhhhCC---CCCHHHHHH
Q 011323 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP---NPTLSTFNM 97 (488)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 97 (488)
++..|..++ +.+.+.+...+|.+|+..+ |.++.+....+. .+..+-.++.|+.+|.+.. +.++..|-.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H--p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH--PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 344555554 5666999999999999988 555444332222 2333334899999998765 344445443
No 395
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.05 E-value=1.3e+02 Score=26.07 Aligned_cols=120 Identities=11% Similarity=0.069 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHccC
Q 011323 211 GAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKY-----NIKGTPEVYTIAINCCSQTG 283 (488)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~ 283 (488)
.+.++|+.-|.....-. +-+.+ -.+...++....+.+++++....+.++... ...-+....+.++.....+.
T Consensus 41 ~~p~~Al~sF~kVlelE-gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE-GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred cCHHHHHHHHHHHHhcc-cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 35566666666554421 11110 112233455556666666666555554321 01122334455555444444
Q ss_pred ChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 284 DWEFACSVYDDMTKK-----GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (488)
Q Consensus 284 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 331 (488)
+.+...+.++.-.+. +-..-..|-..+...|...|.+....++++++.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 444444444322210 000011122334444555555555555555554
No 396
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.76 E-value=1.2e+02 Score=30.20 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011323 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (488)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (488)
+...-..++..|.+.|-.+.+.++.+.+-
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~ 432 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILG 432 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44445555566666666555555555543
No 397
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=56.74 E-value=24 Score=33.00 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCH---HHHHHHHHHHHhcCCh
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL---STFNMLMSVCASSKDS 108 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 108 (488)
.+..+..+.++.|..+|-.+++.+ |..+.+...-...+.+.+++-.|+.=+.++.+.++ ..|---..++.+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 345667889999999999999887 77777776666667777777777777666654332 2333334566677788
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (488)
.+|+..|+.... +.|+..-....+.-|-+
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 888888887765 36777666666655533
No 398
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=56.57 E-value=1.4e+02 Score=26.25 Aligned_cols=98 Identities=17% Similarity=0.122 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHH-HHHHHHcCCChhHHHHHHHHHHhCCCCCCHH--
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNA-LITALCDGDQLPKTMEVLSDMKSLGLCPNTI-- 410 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-- 410 (488)
....+..+...|++.++.+.+.+...+.. ..|.+.|....-+ |.-.|....-.++.++..+.|.+.|-..+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 34566777777777777777766655443 3344444332211 2223333334566677777777776554422
Q ss_pred --HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 411 --TYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 411 --~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+|..+. +....++.+|-.++-....
T Consensus 194 yK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 222222 2233456666666655443
No 399
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.42 E-value=88 Score=23.57 Aligned_cols=43 Identities=12% Similarity=0.283 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHE 152 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 152 (488)
.+.++|..|...|+-.. ...|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666554433 34555666666666666666666654
No 400
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=55.15 E-value=49 Score=29.10 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=40.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (488)
++|+.+.|..+|+...... |.+......++.+....+++-+|-+.|-++.
T Consensus 128 ~~Gk~ekA~~lfeHAlala--P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALA--PTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred hccchHHHHHHHHHHHhcC--CCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 7899999999999998877 7888888778877777778888888776654
No 401
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.71 E-value=69 Score=22.17 Aligned_cols=66 Identities=14% Similarity=0.045 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 253 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (488)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 324 (488)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. +|.. .|..+++++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~----aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEG----WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc----HHHHHHHHHHHcCchhhhh
Confidence 3456666666663 333333333333335577777777777777 5433 3677777777766655443
No 402
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=54.31 E-value=1e+02 Score=23.96 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=21.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH
Q 011323 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT 164 (488)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (488)
.+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 344444444322 12244444444444555555555555444433333
No 403
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.19 E-value=40 Score=29.70 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=19.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHH
Q 011323 412 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (488)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 446 (488)
|+.-|....+.||+++|+.+++++.+.|..--..+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 34555555666666666666666665555544433
No 404
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=54.03 E-value=98 Score=27.42 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (488)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (488)
.++++.+...++.|.-.++..+.-.+.+.=.+..++.+|+.+.. |..-|..|+..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 34566666666777777776666666666667777777776653 2222555555444
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.95 E-value=1.9e+02 Score=26.94 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS 190 (488)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 190 (488)
..+..+...|..+|+++.|.+.+.+....- .+.....|..+|..-.-.|+|..+.....+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456777778888888888888887754421 122334455566666666777666666555544
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.83 E-value=32 Score=30.21 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH
Q 011323 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV 199 (488)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 199 (488)
|+.-|....+.||+++|++++++.++.|+.--..+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 45666666777777777777777776665433333
No 407
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=53.37 E-value=1.7e+02 Score=26.26 Aligned_cols=23 Identities=13% Similarity=0.403 Sum_probs=12.2
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHH
Q 011323 133 LITTCAKSGKVDAMFEVFHEMVN 155 (488)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~ 155 (488)
+..+..+.|+..+|.+.|.++.+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhh
Confidence 33344455666666666655544
No 408
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=52.67 E-value=1.3e+02 Score=29.83 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhHHHHHHHHHHccCCHH------HHHHHHHHHhhCCCCCCCCcchHH
Q 011323 167 ALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVD------RAFDVLAEMNAEVHPVDPDHITIG 238 (488)
Q Consensus 167 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 238 (488)
+|+.+|..+|++..+.++++.....+ -+.=...+|..|+...+.|.++ .+.+++++. .+.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a-----~ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA-----RLNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh-----hcCCcchHHH
Confidence 89999999999999999999988653 2333567888888888988764 333344333 2566777888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 011323 239 ALMKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 239 ~l~~~~~~~~~~~~a~~~~~~~~ 261 (488)
.++.+...--+-....-++..+.
T Consensus 108 ll~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 108 LLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHHhhcChHhHHhccHHHHHHH
Confidence 87776554333333334444443
No 409
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.65 E-value=6.3 Score=34.93 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHH
Q 011323 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFE 148 (488)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 148 (488)
..|.+++|++.|-... ++....|..-.+++.+.+++..|+.=++...+. .|| ..-|-.--.+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 3466777777776554 234445555556677777777777766666553 333 2344444445556677777777
Q ss_pred HHHHHHHcCCCCCHHH
Q 011323 149 VFHEMVNAGIEPNVHT 164 (488)
Q Consensus 149 ~~~~~~~~~~~~~~~~ 164 (488)
.|....+.++.+....
T Consensus 204 dl~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 204 DLALACKLDYDEANSA 219 (377)
T ss_pred HHHHHHhccccHHHHH
Confidence 7777777765544443
No 410
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=52.46 E-value=72 Score=24.28 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=24.3
Q ss_pred cccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011323 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL 56 (488)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~ 56 (488)
.+++++-.++-.| ++.-|+++.|+++.+-+++.|.
T Consensus 45 g~qd~Vl~~~mvW--~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 45 GAQDDVLMTVMVW--LFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred CCcCchHHhhHhh--hhcccCHHHHHHHHHHHHHcCC
Confidence 3455555555555 5678888888888888887775
No 411
>PRK10941 hypothetical protein; Provisional
Probab=51.81 E-value=1.7e+02 Score=25.72 Aligned_cols=72 Identities=18% Similarity=0.070 Sum_probs=36.1
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHH
Q 011323 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIG 452 (488)
Q Consensus 380 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~ 452 (488)
+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..-++...+. .-.|+.......+.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3344555666666666666655531 223444444444555666666666655555443 33344444443333
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.73 E-value=97 Score=25.41 Aligned_cols=30 Identities=10% Similarity=-0.051 Sum_probs=14.4
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 337 VGIISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 337 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
|++.+|..++.++...|+.++|.+..+++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444444444444
No 413
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=51.62 E-value=1.9e+02 Score=26.24 Aligned_cols=78 Identities=9% Similarity=0.021 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHH
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVL 397 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 397 (488)
+.-+.+++++.+.+ +.+......++..+.+..+.+...+-++++.... +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455566655553 3455566666666666666666666666666543 2345556555554332 22355555555
Q ss_pred HHH
Q 011323 398 SDM 400 (488)
Q Consensus 398 ~~~ 400 (488)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 543
No 414
>PRK10941 hypothetical protein; Provisional
Probab=51.37 E-value=1.7e+02 Score=25.68 Aligned_cols=55 Identities=15% Similarity=0.000 Sum_probs=25.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 261 (488)
+-.+|.+.++++.|+.+.+.+..- .|+ ..-+.--.-.|.+.|.+..|..-++...
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l----~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQF----DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 334445555555555555555432 222 1223333334555555555555554443
No 415
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=51.29 E-value=41 Score=21.77 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
|+...++.++..+++..-.+.++..+.+..+.|. .+..+|.--++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555542 344444444444443
No 416
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.90 E-value=1.6e+02 Score=25.20 Aligned_cols=118 Identities=12% Similarity=0.021 Sum_probs=58.9
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH-HHHHHHHHHHhcCCH
Q 011323 278 CCSQTGDWEFACSVYDDMTKKGVIPDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNW 355 (488)
Q Consensus 278 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 355 (488)
.|.....++.|...|.+.+.. .|+. .-|+.-+..+.+..+++.+..--....+. .|+.. ....+..+......+
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 355555666666666555553 3333 33444555566666666666555555543 33332 233344455566667
Q ss_pred HHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011323 356 QKALELYEHMKS----IKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (488)
Q Consensus 356 ~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 399 (488)
++|+..+.+..+ ..+.+-...+..|..+--..=...+..++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 777776666532 23333334444444433333333344444443
No 417
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.64 E-value=2.1e+02 Score=26.49 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCC------------------CccHHHHHH---HHHHHHhcCC
Q 011323 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKN-------QGI------------------SVGIISYSS---LMGACSNAKN 354 (488)
Q Consensus 303 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~------------------~~~~~~~~~---l~~~~~~~g~ 354 (488)
-..++-.+...+.+.|+.+.|.+++++..- ... .-|...|.+ .+..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 345566666778888888777777766431 011 112223332 2445566777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cCCChhHHHHHHHHHH
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQLPKTMEVLSDMK 401 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 401 (488)
+..|.++.+-+...+..-|+.....+|..|+ +.++++-.+++.+...
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 7777777777776654445555555666554 5666666666666544
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.53 E-value=22 Score=26.88 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=19.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (488)
.|.-..|..+|..|.+.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3555677778888888877766 34555543
No 419
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.17 E-value=52 Score=30.99 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=48.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHH
Q 011323 350 SNAKNWQKALELYEHMKSIKLKPTVSTM-NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (488)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 427 (488)
...++++.|..++.++++. .||...| ..=..++.+.+++..|+.=+..+++. .|+ ...|.-=..+|.+.+.+.+
T Consensus 15 l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHHHHHH
Confidence 3455566666666666554 2433332 22234555666666666555555443 232 2222222344444555555
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 428 GLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 428 a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
|...|+.... +.|+..-....+.-|
T Consensus 91 A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 5555554443 445555555555443
No 420
>PF13934 ELYS: Nuclear pore complex assembly
Probab=49.18 E-value=1.7e+02 Score=24.92 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011323 59 MDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (488)
Q Consensus 59 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (488)
+.......-+-.+...+++++|.+++-.. .....--..++.++...|+.+.|+.+++.+.-. ..+......++.. .
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~~~L~~p-s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEALELLSHP-SLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-L 151 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHHHHhCCC-CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-H
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHH
Q 011323 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA----KAGQVAKAFGA 184 (488)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~ 184 (488)
.++.+.+|...-+...+ .-....+..++..+. +.+..++...+
T Consensus 152 a~~~v~EAf~~~R~~~~---~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPD---ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HcCCHHHHHHHHHhCch---hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 421
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.89 E-value=1.6e+02 Score=24.72 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=37.2
Q ss_pred HHHHHHHcCCCh-------hHHHHHHHHHHhCCCCC----C-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCc
Q 011323 379 ALITALCDGDQL-------PKTMEVLSDMKSLGLCP----N-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (488)
Q Consensus 379 ~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 443 (488)
-+...|-..|+- ..|++.|.+..+..-.| + ....-.+.....+.|+.++|.+.|.++...+-.+.
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 344445555553 34555555554332121 2 22333455667788999999999999887744444
No 422
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=48.71 E-value=1.7e+02 Score=24.78 Aligned_cols=96 Identities=14% Similarity=0.036 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---cHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011323 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISY--SSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 376 (488)
Q Consensus 302 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 376 (488)
+...-++.|+--|.-...+.+|-+.|..-. |+.+ +...+ ..-|......|+.+.|.+....+-..-+.-|...
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 344445555544444444455555554322 2222 23322 3445556777777777777666542222233323
Q ss_pred HHHHHH----HHHcCCChhHHHHHHHH
Q 011323 377 MNALIT----ALCDGDQLPKTMEVLSD 399 (488)
Q Consensus 377 ~~~l~~----~~~~~~~~~~a~~~~~~ 399 (488)
+..|.. -..+.|..++|+++.+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 332221 23455666666666554
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.28 E-value=2.3e+02 Score=26.37 Aligned_cols=164 Identities=14% Similarity=0.073 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCcc
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---------ISVG 338 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------~~~~ 338 (488)
..+.-+...|...|+++.|.+.|.+...--. ......+..+|....-.|+|.....+..+....- +++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 4677888899999999999999988554311 1123445566667777889998888888776541 2233
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC-----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-hCCCCCCHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKS-IK-----LKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLCPNTIT 411 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~ 411 (488)
...+..+...+ .+++..|.+.|-.... .. +.|...+.-..+.+++--++-+--+.+..... +.=....+..
T Consensus 231 l~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 33444444333 3366666665544331 11 12222222233334333333222222221111 0001234445
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+..+..-| .+++...+++++++..
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 55555544 4567778888777654
No 424
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=48.12 E-value=2.1e+02 Score=25.69 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=33.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhH
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (488)
..+..+..+..+++..+.++-+++..... |.=-..+.+....+.+.|
T Consensus 101 d~~~~~~~~~~~~~~~~Ll~~~E~sl~~~--pfWLDgq~~~~qal~~lG 147 (301)
T TIGR03362 101 DRVADYQELLAQADWAALLQRVEQSLSLA--PFWLDGQRLSAQALERLG 147 (301)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHCC
Confidence 45667777778888888888888887764 444556666667666655
No 425
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.07 E-value=1.8e+02 Score=24.94 Aligned_cols=116 Identities=13% Similarity=0.048 Sum_probs=67.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChh
Q 011323 314 AGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLP 391 (488)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 391 (488)
|....+++.|+.-+.+.... .|+. .-|..-+.++.+..+++.+..--.+..+. .||.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 55556677777766666654 3444 44555566677777887777666666553 35443 3334455666777788
Q ss_pred HHHHHHHHHHh----CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 011323 392 KTMEVLSDMKS----LGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (488)
Q Consensus 392 ~a~~~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (488)
+|+..+.+..+ ..++|.......|..+--..=...+..++.+
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 88888777632 2334444555555554433334444454443
No 426
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.85 E-value=2.1e+02 Score=25.74 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=74.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCC
Q 011323 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPT 373 (488)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~ 373 (488)
.+..|...++.+..+ ...+.++..+..+...+. |-.--...+.....-|++.||-+.|.+.+.+.. ..|.+.|
T Consensus 65 ~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 65 VIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred ceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 344455555555442 122233333333333332 211223456666777888888888877766543 3455556
Q ss_pred HHHHHHHHH-HHHcCCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 011323 374 VSTMNALIT-ALCDGDQLPKTMEVLSDMKSLGLCPNTI----TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (488)
Q Consensus 374 ~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (488)
...+.+-+. .|....-..+-++..+.+.+.|-..+.. +|..+- |....++.+|-.+|-.....=-.-....|.
T Consensus 143 Vvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~ 220 (393)
T KOG0687|consen 143 VVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYE 220 (393)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHH
Confidence 554443322 3334444556666666666666555432 333332 334456777777775555432223333444
Q ss_pred HHH
Q 011323 449 CII 451 (488)
Q Consensus 449 ~li 451 (488)
.++
T Consensus 221 ~~v 223 (393)
T KOG0687|consen 221 TFV 223 (393)
T ss_pred HHH
Confidence 444
No 427
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=47.66 E-value=94 Score=22.67 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=29.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (488)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (488)
++++.+-++...++|+++++.|.++| ..+...-+.|-..+
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45677788889999999999999988 56655544444433
No 428
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.37 E-value=22 Score=26.85 Aligned_cols=28 Identities=32% Similarity=0.524 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 283 GDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 312 (488)
|.-..|..+|++|++.|-+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 4445566666666666666553 444443
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.34 E-value=1.2e+02 Score=26.24 Aligned_cols=25 Identities=4% Similarity=0.029 Sum_probs=19.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDME 52 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~ 52 (488)
+++....++..|+..+|++-|..-.
T Consensus 13 ~~ki~rl~l~~~~~~~Av~q~~~H~ 37 (247)
T PF11817_consen 13 AFKICRLYLWLNQPTEAVRQFRAHI 37 (247)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4556677778999999999887544
No 430
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=47.30 E-value=2.9e+02 Score=27.12 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=23.7
Q ss_pred CCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC
Q 011323 55 GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (488)
Q Consensus 55 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (488)
+-+++.......+..++...|++++|+.+--..
T Consensus 53 ~sf~~remaaL~~SKvYy~LgeY~~Ai~yAL~a 85 (926)
T COG5116 53 DSFDPREMAALCLSKVYYVLGEYQQAIEYALRA 85 (926)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 334555566677778888889999999886443
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.98 E-value=99 Score=21.69 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=11.0
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011323 35 LIRQGRISECIDLLEDME 52 (488)
Q Consensus 35 l~~~g~~~~A~~~~~~~~ 52 (488)
-++.|++.+|++.+.+..
T Consensus 8 ~~~~~dy~~A~d~L~~~f 25 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYF 25 (94)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 346777777766555544
No 432
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=46.91 E-value=1.3e+02 Score=23.05 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 372 PTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
++..+-..+..++.+..+ ..+.+.+++++.+.. .|+ ......|.-++.+.++++.++++++.+.+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 334444444444444333 233444555544311 221 22223344455555555555555555554
No 433
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.60 E-value=1.3e+02 Score=29.38 Aligned_cols=108 Identities=21% Similarity=0.156 Sum_probs=58.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (488)
.|...-.+...|+...|...+....-..+.-..+....+.+...+.|..-.|..++.+..... ...+-++-.+.+++.-
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLA 688 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHH
Confidence 333333344556666666666554432222122334445555556666666666666655543 3344566666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 352 AKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 381 (488)
..+.+.|++.|+...+.. +.+..+-+.|.
T Consensus 689 l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLT-TKCPECENSLK 717 (886)
T ss_pred HhhhHHHHHHHHHHHhcC-CCChhhHHHHH
Confidence 777777777777766554 33344444443
No 434
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.59 E-value=98 Score=30.18 Aligned_cols=164 Identities=13% Similarity=0.002 Sum_probs=96.8
Q ss_pred HHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 250 VDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 250 ~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
++...+.++ .|....--|+..+...++.-....-- .+.+-.++..|.+. ..|--...+...-.+...|+...|...
T Consensus 551 ~~~~~~~l~~r~d~k~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~c 629 (886)
T KOG4507|consen 551 LSYLVKELEVRMDLKAKMPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIAC 629 (886)
T ss_pred HHHHHHHhhhcccccccCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHH
Confidence 444445544 23222234555666555544433322 23445555555442 334333333333334557888888888
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 011323 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (488)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 406 (488)
+.........-.-+..-.|.....+.|..-.|-.++.+..... ...+-++-.+.+++....+.++|++.|++..+.. +
T Consensus 630 l~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~ 707 (886)
T KOG4507|consen 630 LQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-T 707 (886)
T ss_pred HHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-C
Confidence 8776654333233445556666777788888888888777654 3445667778889999999999999999988752 3
Q ss_pred CCHHHHHHHH
Q 011323 407 PNTITYSILL 416 (488)
Q Consensus 407 p~~~~~~~l~ 416 (488)
.+...-+.|.
T Consensus 708 ~~~~~~~~l~ 717 (886)
T KOG4507|consen 708 KCPECENSLK 717 (886)
T ss_pred CChhhHHHHH
Confidence 3344444443
No 435
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.69 E-value=1.9e+02 Score=24.50 Aligned_cols=64 Identities=16% Similarity=0.208 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP---NVHTY--GALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
.+...-+|.|+--|.-...+.+|-+.|.. +.|+.| +..+. ..-|+.....|+++.|++...++-
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 33444444444444444444444444432 222222 22222 234445566666666666665554
No 436
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.25 E-value=2e+02 Score=24.67 Aligned_cols=58 Identities=9% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHH
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFHEMVN 155 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 155 (488)
+++..-+.++++++.+.+..+...+...+..--+.+..+|-. .|....+++++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 455566677777777777777776666666666655555532 2444455555555543
No 437
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.15 E-value=1.4e+02 Score=23.90 Aligned_cols=60 Identities=8% Similarity=0.055 Sum_probs=31.2
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011323 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (488)
+.+.|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3444554443322 33444444455556666676666665555555544455555655543
No 438
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=45.07 E-value=2.4e+02 Score=25.65 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011323 390 LPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 390 ~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (488)
.+++..++.+++.. .|+. ..|-.+++.....|.++.++.+|+++...|-.|-...-..+++.+.
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34666677776653 3453 3566777777888888888888888888888888877777777754
No 439
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.99 E-value=2e+02 Score=24.59 Aligned_cols=136 Identities=13% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (488)
....--+..|.+.-+|.-|-....++.+ ...+-.+++. |.+..+..-...+.+-....+++.+...+..++ +
T Consensus 131 QAlRRtMEiyS~ttRFalaCN~s~KIiE-----PIQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--f 202 (333)
T KOG0991|consen 131 QALRRTMEIYSNTTRFALACNQSEKIIE-----PIQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--F 202 (333)
T ss_pred HHHHHHHHHHcccchhhhhhcchhhhhh-----hHHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--h
Q ss_pred HhcCCHHHHHHHHHHHHh-------------CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011323 350 SNAKNWQKALELYEHMKS-------------IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (488)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 415 (488)
...||..+|...++.-.. .+ .|.+.....++..|.+ +++++|.+++.++-+.|+.|....-+.+
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d-~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCD-EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccC-CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 440
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.04 E-value=3e+02 Score=26.45 Aligned_cols=37 Identities=3% Similarity=0.020 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHhcCChhH
Q 011323 74 QKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEG 110 (488)
Q Consensus 74 ~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 110 (488)
.+.++.-.+++..+. ......+|.-...|.+.|....
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~ 70 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQH 70 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchh
Confidence 355666666665443 2334457777777777776543
No 441
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=43.93 E-value=2.8e+02 Score=26.07 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=10.4
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 011323 98 LMSVCASSKDSEGAFQVLRL 117 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~ 117 (488)
+++.++-.|++..|+++++.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~ 147 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLEN 147 (404)
T ss_pred HHHHHHhccCHHHHHHHhhc
Confidence 34445555555555555543
No 442
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=43.90 E-value=2.9e+02 Score=26.17 Aligned_cols=63 Identities=14% Similarity=0.265 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 011323 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (488)
Q Consensus 377 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 440 (488)
...|+.-|...|+..+|.+.++++--- +-.-...+.+++.+..+.|+-...+.+++..-+.|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 456777888888888888888775311 111245677888888888887777777776666554
No 443
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=43.44 E-value=3.6e+02 Score=27.20 Aligned_cols=162 Identities=13% Similarity=0.141 Sum_probs=92.3
Q ss_pred hhHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHhhhHHHHHHHHHhhhCC----C----CCHH
Q 011323 27 EQLHSYNRLI-RQGRISECIDLLEDMERKGLLDMD----KVYHARFFNVCKSQKAIKEAFRFFKLVP----N----PTLS 93 (488)
Q Consensus 27 ~~~~~~~~l~-~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~----~~~~ 93 (488)
.++...+.|+ ...++++|...+++....-..+.- -....+++.++.+.+... |.+..++.. . +-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4555556666 688999999999977543211111 112334555666555444 777766543 1 1112
Q ss_pred HHHHH-HHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--HcCCHhHHHHHHHHHHHcC---------C
Q 011323 94 TFNML-MSVCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCA--KSGKVDAMFEVFHEMVNAG---------I 158 (488)
Q Consensus 94 ~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~ 158 (488)
.+..+ +..+...+++..|.+.++.+...- ..|-..++..++.+.. ..+..+++.+.++.+.... .
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 23333 233334479999999998876432 2344455555555544 3455677777777764321 1
Q ss_pred CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 011323 159 EPNVHTYGALIDGCA--KAGQVAKAFGAYGIMR 189 (488)
Q Consensus 159 ~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~ 189 (488)
.|...+|..+++.++ ..|+++.+...++++.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345667777776554 5777766666655553
No 444
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.37 E-value=47 Score=16.92 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHCC
Q 011323 39 GRISECIDLLEDMERKG 55 (488)
Q Consensus 39 g~~~~A~~~~~~~~~~~ 55 (488)
|+++.|.++|+++...-
T Consensus 1 ~~~~~~r~i~e~~l~~~ 17 (33)
T smart00386 1 GDIERARKIYERALEKF 17 (33)
T ss_pred CcHHHHHHHHHHHHHHC
Confidence 56778888888888764
No 445
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.02 E-value=2.9e+02 Score=25.99 Aligned_cols=43 Identities=12% Similarity=0.306 Sum_probs=18.4
Q ss_pred CcHHHHHHHHHHHhh-cHHHHHHHHHHhhhccCCCCccccceee
Q 011323 442 PNLVMFKCIIGMCSR-RYEKARTLNEHVLSFNSGRPQIENKWYV 484 (488)
Q Consensus 442 ~~~~~~~~li~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~w~~ 484 (488)
.....|..++.-... -..+...+...+..+++.-..+...|+.
T Consensus 346 ~~~~iY~~~i~~~i~~~~~R~~li~~~~~~i~~~~~~~~~~w~~ 389 (413)
T PHA02875 346 DEAHFYKYLLKEAADIALKRAEAIESAIRVIDDEITGDESKWNI 389 (413)
T ss_pred cceehHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhc
Confidence 344557777654432 2233333333343333322122345654
No 446
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.94 E-value=2.8e+02 Score=25.85 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=23.5
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 011323 280 SQTGDWEFACSVYDDMTKKGVIPDEV--FLSALIDFAG--HAGKVEAAFEILQEAKN 332 (488)
Q Consensus 280 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 332 (488)
.+.+++..|.++++.+... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455555555555555554 322222 2333333332 23445555555555443
No 447
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=42.77 E-value=2.4e+02 Score=24.92 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHH
Q 011323 249 QVDRAREVYKMIHKYNIKGTPEVYT 273 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (488)
+...+...+......+.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 6777777777777666554444433
No 448
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=41.79 E-value=58 Score=17.54 Aligned_cols=13 Identities=0% Similarity=0.102 Sum_probs=5.9
Q ss_pred hhHHHHHHHHHHh
Q 011323 390 LPKTMEVLSDMKS 402 (488)
Q Consensus 390 ~~~a~~~~~~~~~ 402 (488)
++.|..+|++...
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 449
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.30 E-value=2.7e+02 Score=25.20 Aligned_cols=82 Identities=12% Similarity=0.149 Sum_probs=44.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHHc---CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHh-HHHHH
Q 011323 135 TTCAKSGKVDAMFEVFHEMVNA---GIEPNVHTY--GALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRV-VFNAL 203 (488)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~-~~~~l 203 (488)
...-+.++.++|++.++++.+. --.|+...| ....+++...||..++.+++++..+ .+++|+.. .|..+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 3334445667777777666542 123454444 3444555667777777777776665 46665443 34444
Q ss_pred HHHHH-ccCCHHHH
Q 011323 204 ITACG-QSGAVDRA 216 (488)
Q Consensus 204 l~~~~-~~g~~~~a 216 (488)
-.-|. ..|++...
T Consensus 163 ssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 163 SSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHhHHHH
Confidence 44333 34554443
No 450
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.29 E-value=3e+02 Score=25.68 Aligned_cols=55 Identities=20% Similarity=0.095 Sum_probs=40.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHH--HHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGISVGII--SYSSLMGAC--SNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 368 (488)
.+...+++..|.+++..+.+. ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445789999999999999986 555444 455555555 4577899999999887653
No 451
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=41.24 E-value=2.4e+02 Score=24.57 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 011323 60 DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (488)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (488)
++.+|..++..+.+.|++.+|+..|-....++...+..++......|...++ +...-. .+-.|.-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~R-aVL~yL~ 153 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIAR-AVLQYLC 153 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHH-HHHHHHH
Confidence 4566777777777777777777766655444333332233333323322222 111112 2233445
Q ss_pred cCCHhHHHHHHHHHHH
Q 011323 140 SGKVDAMFEVFHEMVN 155 (488)
Q Consensus 140 ~~~~~~a~~~~~~~~~ 155 (488)
.++...|...++...+
T Consensus 154 l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 154 LGNLRDANELFDTFTS 169 (260)
T ss_dssp TTBHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 6667777776666554
No 452
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.40 E-value=60 Score=21.01 Aligned_cols=50 Identities=8% Similarity=-0.029 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011323 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (488)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 209 (488)
.|....++.++..+++..-.+.++..+.+....|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45667778888888888888888888888888873 566666666666554
No 453
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=40.39 E-value=2.5e+02 Score=24.47 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=29.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011323 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDP-----DHITIGALMKACANAGQVDRAREVYKMIHKY 263 (488)
Q Consensus 202 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 263 (488)
.++..|.+.|+.+.|-.++--+.... +... +......++......++++-+.++.+.+...
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e-~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLE-GSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKAL 249 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 45555566666666655554443211 1111 1222233444555556666666665555443
No 454
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.00 E-value=2.8e+02 Score=24.96 Aligned_cols=17 Identities=6% Similarity=0.251 Sum_probs=8.3
Q ss_pred HHhcCCHHHHHHHHHHH
Q 011323 349 CSNAKNWQKALELYEHM 365 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~ 365 (488)
..+.|+..+|.+.|+.+
T Consensus 285 ARklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDL 301 (556)
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 33445555555555444
No 455
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.81 E-value=2.2e+02 Score=24.62 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=10.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011323 345 LMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~ 365 (488)
+..-|...|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444455555555554444
No 456
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.65 E-value=1.5e+02 Score=21.63 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 332 (488)
|..++..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 457
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.31 E-value=2.5e+02 Score=24.06 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=13.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC
Q 011323 244 CANAGQVDRAREVYKMIHKYNI 265 (488)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~~~~ 265 (488)
.+..+++.+|..+|+++.....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666677777766655443
No 458
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.27 E-value=4.3e+02 Score=27.70 Aligned_cols=189 Identities=15% Similarity=0.144 Sum_probs=93.8
Q ss_pred CchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHh
Q 011323 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (488)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 104 (488)
+.+.-+.+..-+-+.++++.+.+.+...--| ..++.++.+.|-.+-|+.+.+.-. + -...+..
T Consensus 593 IDptEy~FKlALi~k~ydeVl~lI~ns~LvG---------qaiIaYLqKkgypeiAL~FVkD~~-----t---RF~LaLe 655 (1202)
T KOG0292|consen 593 IDPTEYRFKLALLNKKYDEVLHLIKNSNLVG---------QAIIAYLQKKGYPEIALHFVKDER-----T---RFELALE 655 (1202)
T ss_pred echHHHHHHHHHHhhhhHHHHHHHHhcCccc---------HHHHHHHHhcCCcceeeeeecCcc-----h---heeeehh
Confidence 3445555555555777777777665443333 123334444454444444433211 0 1223445
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (488)
.|+.+.|++.-..+ .+..+|..|......+|+.+-|+..|++... |..|--.|.-.|+.++..++
T Consensus 656 ~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 656 CGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred cCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 56666665543322 2456677777777777777777777666553 22333344455666665555
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
......++ |..+ ......-.|+.++-.++++.... .|- .|. .....|.-+.|.++.+....
T Consensus 721 ~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~n~g~-----~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEIRN---DATG---QFQNALYLGDVKERVKILENGGQ-----LPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHHhcCc-----ccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 54443221 1111 11112235666666666655422 111 221 12345666667666666654
No 459
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=38.80 E-value=1e+02 Score=19.64 Aligned_cols=14 Identities=43% Similarity=0.544 Sum_probs=5.2
Q ss_pred cCCHHHHHHHHHHH
Q 011323 317 AGKVEAAFEILQEA 330 (488)
Q Consensus 317 ~g~~~~a~~~~~~~ 330 (488)
.|++-+|-++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 33444444444433
No 460
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.24 E-value=2.2e+02 Score=23.21 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=13.7
Q ss_pred HHHHHccCChHHHHHHHHHHHh
Q 011323 276 INCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 4456666666666666666555
No 461
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.88 E-value=1.4e+02 Score=20.88 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=12.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH
Q 011323 416 LVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.......|++++|...+++.++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3444556666666666665553
No 462
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.71 E-value=3.8e+02 Score=25.80 Aligned_cols=377 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCCHHHHHH-----H
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCK------LYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGA-----L 168 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 168 (488)
.+.-.++++.|..-++......-....+ ++..+...|.... .+..+..++.+.++. ..+...|.. |
T Consensus 56 L~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaiel--sq~~p~wsckllfQL 133 (629)
T KOG2300|consen 56 LLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIEL--SQSVPYWSCKLLFQL 133 (629)
T ss_pred HHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHH--hcCCchhhHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc------cCCHHHHHHHHHHHhhCCCCCCCC--------c
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ------SGAVDRAFDVLAEMNAEVHPVDPD--------H 234 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~~~~~~~--------~ 234 (488)
+..+.-..|+..|.+++.---+.. .+-...|..++..+.+ ..+..++.+++...........+| .
T Consensus 134 aql~~idkD~~sA~elLavga~sA-d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~Lkv 212 (629)
T KOG2300|consen 134 AQLHIIDKDFPSALELLAVGAESA-DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKV 212 (629)
T ss_pred HHHHhhhccchhHHHHHhcccccc-chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHH
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------------------CCCCCHHHHHHHHHHHHccCChH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKY----------------------------NIKGTPEVYTIAINCCSQTGDWE 286 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~ 286 (488)
+-.+.-+..|.-.|+...+...++++.+. .-....-+|......-...|-++
T Consensus 213 Fyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~ 292 (629)
T KOG2300|consen 213 FYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFK 292 (629)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHH
Q ss_pred HHHHHHHHHHhC--------CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH---------HHHHH
Q 011323 287 FACSVYDDMTKK--------GVIP-----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI---------ISYSS 344 (488)
Q Consensus 287 ~a~~~~~~~~~~--------~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~ 344 (488)
+|.++-++++.. +..| ...+...++-+-.-.|++.+|++-...|.+-...... ..-..
T Consensus 293 ~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~L 372 (629)
T KOG2300|consen 293 KAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHML 372 (629)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH------
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL------ 416 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~------ 416 (488)
+...++..+.++.|..-|....+.--..|...+. .+...|.+.|+.+.-.++++.+- +|+..++.+..
T Consensus 373 lGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~ 448 (629)
T KOG2300|consen 373 LGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASIL 448 (629)
T ss_pred HhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHH
Q ss_pred ----HHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh-------cHHHHHHHHHHhhhccCCCCc-cccceee
Q 011323 417 ----VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-------RYEKARTLNEHVLSFNSGRPQ-IENKWYV 484 (488)
Q Consensus 417 ----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~a~~~~~~~~~~~~~~~~-~~~~w~~ 484 (488)
--....+++.+|..++.+-.+..-.-|..-..+.--.+.. +..++.....-...+..--|+ .+..|.+
T Consensus 449 ~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~ 528 (629)
T KOG2300|consen 449 YVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSS 528 (629)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHH
No 463
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.37 E-value=80 Score=26.52 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=20.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC
Q 011323 97 MLMSVCASSKDSEGAFQVLRLVQEAG 122 (488)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 122 (488)
.+.....+.|+.++|.+.|..+...+
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34456677899999999999888654
No 464
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.16 E-value=1.6e+02 Score=21.41 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=22.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
-|..++..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888776
No 465
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.09 E-value=1.4e+02 Score=20.26 Aligned_cols=25 Identities=12% Similarity=0.391 Sum_probs=12.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAG 122 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~ 122 (488)
+++.+.++.-.++|+++++.|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3344444455555555555555554
No 466
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.96 E-value=6.1e+02 Score=27.66 Aligned_cols=130 Identities=12% Similarity=0.169 Sum_probs=65.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 011323 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT--LSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
+..|+.-+|+..|.+... |+..++ .++.......-.+..+.+. +...++. ..-|..+++.+-+.+-.+.+.+
T Consensus 931 l~tge~~kAl~cF~~a~S-g~ge~~-aL~~lv~~~~p~~~sv~dG----~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 931 LGTGEPVKALNCFQSALS-GFGEGN-ALRKLVYFLLPKRFSVADG----KTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred ecCCchHHHHHHHHHHhh-ccccHH-HHHHHHHHhcCCCCchhcC----CCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 357888889988888865 333333 3332222111100000000 0000111 2346667777777777777777
Q ss_pred HHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCH
Q 011323 114 VLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH----TYGALIDGCAKAGQV 178 (488)
Q Consensus 114 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 178 (488)
+-....+. ++++ ..+++.+.+.....|.+-+|.+.+-. .||.. +...++..++.+|.+
T Consensus 1005 lA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 1005 LAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccch
Confidence 77666543 2222 23556666666666666666554432 23332 344455555566554
No 467
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.93 E-value=1.2e+02 Score=22.12 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=17.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (488)
.+...+..-.|.++++.+.+.+...+..|....+..+.+.|
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33333334444445544444443334443333344444443
No 468
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.40 E-value=2.3e+02 Score=22.67 Aligned_cols=60 Identities=7% Similarity=0.067 Sum_probs=34.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011323 153 MVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (488)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 213 (488)
+.+.|+..+..-. .++..+...++.-.|.++++.+.+.+...+..|..-.+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445555444332 44444444555666777777777776656666655566666666554
No 469
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.12 E-value=3.3e+02 Score=24.27 Aligned_cols=52 Identities=12% Similarity=0.130 Sum_probs=25.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
++..+.+.++.....+.+..+.. ...-...+..+...|++..|++++.+...
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444444432 22233444555566666666666655543
No 470
>PRK09857 putative transposase; Provisional
Probab=35.08 E-value=3.3e+02 Score=24.30 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (488)
+..++......++.++..++++.+.+. .+.......++..-+...|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555555666666666677666554 233333444555666666666667777777777776543
No 471
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.03 E-value=2.2e+02 Score=22.16 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=16.8
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44555555555555544444444333344444444
No 472
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=34.36 E-value=1.1e+02 Score=19.61 Aligned_cols=24 Identities=4% Similarity=0.185 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchH
Q 011323 38 QGRISECIDLLEDMERKGLLDMDK 61 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~ 61 (488)
+=+++.|+..|.++...+..|+++
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 448999999999998877556543
No 473
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.33 E-value=2.6e+02 Score=22.97 Aligned_cols=183 Identities=10% Similarity=0.052 Sum_probs=0.0
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 011323 155 NAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
+.|..++...++.++..+....-...-+..+-.++.+ +..-+......=+..|-..||+.+.-.+|-....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~- 79 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM- 79 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh-
Q ss_pred CCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 011323 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (488)
Q Consensus 227 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 305 (488)
++-+.++++.--.......-.+.+..+.+ |..+..+-++.-+.+++.+.+ =..
T Consensus 80 ----------------gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~----------LGR 133 (233)
T PF14669_consen 80 ----------------GCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTL----------LGR 133 (233)
T ss_pred ----------------hcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhh----------hhH
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--------------CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 306 FLSALIDFAGHAGKVEAAFEILQEAKN--------------QGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (488)
Q Consensus 306 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 364 (488)
+--+++-.|.+..++.+..++++.+.+ .+..+.-...|.....+.+.|..+.|..++++
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 474
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=33.16 E-value=3.8e+02 Score=24.40 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHh-----CCCCCCHHH-
Q 011323 343 SSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKS-----LGLCPNTIT- 411 (488)
Q Consensus 343 ~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~- 411 (488)
..++...-+.++.++|.++++++.+. .-.|+...|. .+.+++...|+..++.+++.+..+ .|++|+.++
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34444555667888888888877632 2245655554 345566677888888888877665 566775443
Q ss_pred HHHHHHHHh-hcCCH
Q 011323 412 YSILLVACE-RKDDV 425 (488)
Q Consensus 412 ~~~l~~~~~-~~g~~ 425 (488)
|..+-.-|. ..|++
T Consensus 159 fY~lssqYyk~~~d~ 173 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDF 173 (380)
T ss_pred HHHHHHHHHHHHHhH
Confidence 444443333 33443
No 475
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.02 E-value=3.1e+02 Score=23.38 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=29.5
Q ss_pred ccccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011323 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL 57 (488)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~ 57 (488)
..+++++-.++-.| ++.-|+++.|+++.+-+++.|..
T Consensus 79 ~~~qd~Vl~~~mvW--~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 79 AGYQDDVLMTVMVW--RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred CCCCCCeeeEeeee--eeeccCHHHHHHHHHHHHHcCCC
Confidence 35666676677677 67899999999999999998864
No 476
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=32.86 E-value=3.4e+02 Score=23.72 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=31.5
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHh-HHHHHHHHHH---HcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 120 EAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEMV---NAGI--EPNVHTYGALIDGCAKAGQVAKAFGAY 185 (488)
Q Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 185 (488)
+.+.+.+......++..+...+.-+ +-.++.+.+. +.|- .-++.....+...|.+.+++..|...|
T Consensus 42 ~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 42 KSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3455556555555555555443211 1222222222 2221 235667777788888888888777665
No 477
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=32.81 E-value=1.2e+02 Score=22.49 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=18.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (488)
++..+...+..-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 33444444444455555555554444444443333333333333
No 478
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=32.62 E-value=1.4e+02 Score=31.78 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (488)
+..|..|.....+.+++++|..|.+.++......++...+..+.+.+.+.+|..+|....
T Consensus 82 l~~~~~~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Gi 141 (974)
T KOG1166|consen 82 LILWCSLELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGI 141 (974)
T ss_pred HHHHHhHHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333445667777888888887777767777777777777777777777777776654
No 479
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=32.32 E-value=3.5e+02 Score=23.83 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCC
Q 011323 357 KALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 404 (488)
.|...+.++...+ +......+...|.. ..+..+|...|....+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 5556666555544 22333333333322 235566666666666554
No 480
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=32.30 E-value=2.3e+02 Score=21.75 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=47.7
Q ss_pred CccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 011323 336 SVGIISYSSLMGACSNAKN---WQKALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 408 (488)
.++..+-..+..++.+..+ ..+.+.+++.+.+.. ........-.|.-++.+.+++++++++++.+.+. .||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~--e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET--EPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--CCC
Confidence 4556666667777776654 556777888887522 1222344445667888999999999999988874 454
No 481
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.28 E-value=1.6e+02 Score=19.94 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=21.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH
Q 011323 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (488)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 163 (488)
+++.+.++...++|+++++.+.+.| ..+..
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 4566677777888888888888777 33443
No 482
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=31.80 E-value=79 Score=20.92 Aligned_cols=37 Identities=8% Similarity=0.113 Sum_probs=25.6
Q ss_pred CCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCch
Q 011323 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60 (488)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~ 60 (488)
+....+.+|..+++..+++.+..-+......+.+|+.
T Consensus 28 ~~k~~v~~W~~~L~d~~ye~v~~al~~~i~~~kfPPs 64 (71)
T PF11417_consen 28 DSKETVDLWYDMLKDYDYEIVMKALKKHIATNKFPPS 64 (71)
T ss_dssp THHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-SS---
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcC
Confidence 3345789999999999999999998876655545544
No 483
>PRK09857 putative transposase; Provisional
Probab=31.51 E-value=3.8e+02 Score=23.93 Aligned_cols=58 Identities=7% Similarity=0.013 Sum_probs=31.0
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCc
Q 011323 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443 (488)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 443 (488)
...++.++-.++++.+.+. .++.......++.-+...|..+++.++..+|...|+.++
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3445544455555554443 233333344455555555555666777777777776655
No 484
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=31.39 E-value=2.6e+02 Score=24.23 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCC--ChhHHHHHHHHH----HhCCCC
Q 011323 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGD--QLPKTMEVLSDM----KSLGLC 406 (488)
Q Consensus 337 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~----~~~~~~ 406 (488)
|-...-..++...-+....++...+++.+... +..++......++.+++..| .+.-+..++++. +..+ .
T Consensus 9 P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l~-~ 87 (253)
T PF09090_consen 9 PFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKELE-A 87 (253)
T ss_dssp TTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH--T
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc-c
Confidence 44455555666655555566666666655432 22344566667777666544 344454444442 2211 2
Q ss_pred CCHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHcCCCCcH
Q 011323 407 PNTITYSILLVACER--KDDVEVGLMLLSQAKEDGVIPNL 444 (488)
Q Consensus 407 p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~ 444 (488)
++...=..++.+..+ ..+++.+.-+.++|...++-...
T Consensus 88 ~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~ 127 (253)
T PF09090_consen 88 ESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPS 127 (253)
T ss_dssp SSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HH
T ss_pred CChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHH
Confidence 333332233333222 35566677777777777665443
No 485
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=30.94 E-value=4.6e+02 Score=24.77 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH--------HHHhcCCHHHHHHH
Q 011323 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID--------GCAKAGQVAKAFGA 184 (488)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~a~~~ 184 (488)
++-..+....+.||..+.|.+...++..-..+-...+|+-..+.+ .|-...+.+++- .-.+...-+++++.
T Consensus 169 elc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikf 247 (669)
T KOG3636|consen 169 ELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKF 247 (669)
T ss_pred HHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHH
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHH
Q 011323 185 YGIMRSKNVKPDRVVFNALITACG 208 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~ 208 (488)
++.|...--.-|..-+.+|..-|+
T Consensus 248 Lenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 248 LENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HHcCchhcccccchhHHHHHHHHh
No 486
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.88 E-value=5.2e+02 Score=25.35 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=17.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 201 NALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 201 ~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
..++.-|.+.+++++|..++..|.-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 3456667777777777777777654
No 487
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.55 E-value=3.9e+02 Score=23.78 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhcCCHHHHH
Q 011323 236 TIGALMKACANAGQVDRAR 254 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~ 254 (488)
.|..+..+|.-.|+...+.
T Consensus 199 ~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 199 KYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHhhhHHHH
Confidence 5555666655555544433
No 488
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=30.51 E-value=4.1e+02 Score=24.98 Aligned_cols=218 Identities=11% Similarity=0.066 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCCCCHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA--GIEPNVHTYGAL 168 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l 168 (488)
+..--+..+.++...++++..-..+-...-.. .....+..-|++.+.-.|+.....+.++.+.+. |..|.-..--.+
T Consensus 200 ~ksqi~~ql~~~~s~~dp~~va~~~g~s~~y~-~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~V 278 (525)
T KOG3677|consen 200 DKSQISIQLTASVSNKDPALVALIFGASQPYA-NLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQV 278 (525)
T ss_pred HHHHHHHHHHHHhcCCChhhhhhhhccccHHH-hhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeeh
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHH----
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC---- 244 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~---- 244 (488)
.-+|.-.+++.+|.+.|-..... +..+...+...--.+...+.--+-...+-.+...-.+...|......+...|
T Consensus 279 GFayLmmrryadai~~F~niLly-Iqrtks~~~~~~y~~d~inKq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d~m 357 (525)
T KOG3677|consen 279 GFAYLMMRRYADAIRVFLNILLY-IQRTKSMFSRTTYQYDMINKQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGDKM 357 (525)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcchhhhHhhhhhhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcchh
Q ss_pred --HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011323 245 --ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (488)
Q Consensus 245 --~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (488)
...|+.+.-..+|......-..|....|..+..-|.+.--.....-.++......--|....|..+
T Consensus 358 l~mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~kePl~~qlq~fld~v~qq~dl~~~rsylkl 425 (525)
T KOG3677|consen 358 LPMQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHKEPLLQQLQVFLDEVSQQADLPTIRSYLKL 425 (525)
T ss_pred hhhhcCChHHHHHHHHHcCccccCCCCcccccccccccccHHHHHHHHHhHHHhhhccchHHHHHHHH
No 489
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=30.39 E-value=1.6e+02 Score=21.54 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=14.7
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333444444444444433333333333333344333
No 490
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.71 E-value=6.4e+02 Score=25.97 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=12.1
Q ss_pred hhcCCHHHHHHHHHHHHH
Q 011323 420 ERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~ 437 (488)
.-++++.+|.+.-+.|.+
T Consensus 377 VLAnd~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 377 VLANDYQKAIQAAEMMFK 394 (1226)
T ss_pred hhccCHHHHHHHHHHHhc
Confidence 345677777777777766
No 491
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.69 E-value=4.4e+02 Score=24.10 Aligned_cols=63 Identities=10% Similarity=0.217 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011323 144 DAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 208 (488)
+++..+++++++. .|+. ..|-.+++.....|.++.++.+|++....|-.|-...-..++..+-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4666677766654 4443 3577788888888888888999998888888877666666666544
No 492
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.65 E-value=6.3e+02 Score=25.93 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhhcC
Q 011323 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI--TYSILLVACERKD 423 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g 423 (488)
..+|+-.|+.....+++.-... ++..|+.-+..+.-++.-..+++....+++-+.+. ..|-.. +-..|.-+|+..|
T Consensus 544 alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG 621 (929)
T KOG2062|consen 544 ALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG 621 (929)
T ss_pred HHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC
Confidence 3445555554444444443332 22344444444445555556666666666555543 233322 2223334455555
Q ss_pred CHHHHHHHHHHHHH
Q 011323 424 DVEVGLMLLSQAKE 437 (488)
Q Consensus 424 ~~~~a~~~~~~~~~ 437 (488)
+ .+|+.+++-|.+
T Consensus 622 ~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 622 L-KEAINLLEPLTS 634 (929)
T ss_pred c-HHHHHHHhhhhc
Confidence 4 456666666664
No 493
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=29.57 E-value=8e+02 Score=27.10 Aligned_cols=27 Identities=7% Similarity=-0.148 Sum_probs=13.4
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHh
Q 011323 58 DMDKVYHARFFNVCKSQKAIKEAFRFF 84 (488)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~ 84 (488)
|.....+..+...+-..++.++|+..-
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~ 996 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQ 996 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhc
Confidence 334444444455555555555555554
No 494
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=29.40 E-value=2.7e+02 Score=23.33 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 303 DEVFLSALIDFAGHAG---------KVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 303 ~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
...-|..+..+|.+.| +.+.-.++++...+.|++ .-++.|.++++--.-.-+.++..+++..+
T Consensus 162 ~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 162 HLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred cHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHh
Confidence 3344555666666554 233444444555555432 22345555554433333455555555443
No 495
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=29.27 E-value=2.2e+02 Score=22.07 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhH
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (488)
-+......+..|++..|.++.+.+...+ |.+.....+....+...|
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~~ad--p~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLVFAD--PDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHH
Confidence 3444555567888888888888888776 666666665555555444
No 496
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=29.02 E-value=5e+02 Score=25.37 Aligned_cols=165 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCccCcccccccCCCcccccccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHH
Q 011323 1 MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80 (488)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 80 (488)
||+.+.-...|......+.+...-..-.+..+..+++.|+.+.|-.++.++...=..........+..++....++...|
T Consensus 39 lq~~a~a~s~~yl~qa~qs~~~~~~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q~~~~~LL~ael~la~~q~~~A 118 (604)
T COG3107 39 LQGTANASSQFYLQQAQQSSGEQQNDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQRAEKSLLAAELALAQKQPAAA 118 (604)
T ss_pred ccCCcchhHHHHHHHHhhcCchhhhhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhccChHHH
Q ss_pred HHHhhhCC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011323 81 FRFFKLVP------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (488)
Q Consensus 81 ~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (488)
.+.+.+.. ..-...|...+.+....|+.-.+.+-+-.+.. ++..-.+..+.+..+.++..-.
T Consensus 119 l~~L~~~~~~~ls~~Qq~Ry~q~~a~a~ea~~~~~~a~rari~~~~------------lL~~k~~q~nid~tW~ll~~~~ 186 (604)
T COG3107 119 LQQLAKLLPADLSQNQQARYYQARADALEARGDSIDAARARIAQDP------------LLSGKAKQANIDKTWQLLSEQA 186 (604)
T ss_pred HHHHhhcchhhcCHHHHHHHHHHHHHHHhcccchHHHHHHHHHhhh------------hccchhHHHhHHHHHHHhhhhc
Q ss_pred HcCCCC--------CHHHHHHHHHHHHhcCC
Q 011323 155 NAGIEP--------NVHTYGALIDGCAKAGQ 177 (488)
Q Consensus 155 ~~~~~~--------~~~~~~~l~~~~~~~~~ 177 (488)
..|+-. ...-|..+.+.|-..+.
T Consensus 187 ~~~VIn~sa~e~~~~L~GWL~L~rv~~~~~~ 217 (604)
T COG3107 187 NTGVINNSADEGNAALQGWLDLARVYKDNGS 217 (604)
T ss_pred cccceecccCCcccccchHHHHHHHHHhccc
No 497
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=28.61 E-value=4.3e+02 Score=23.68 Aligned_cols=190 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcC-----CHhHHHHHHHH---------HHHcCCCCC--
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSG-----KVDAMFEVFHE---------MVNAGIEPN-- 161 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~---------~~~~~~~~~-- 161 (488)
+-++++.|..+ ...+++.+... .-.++...|..++..+.... ..+.....|+. +.+.|.++.
T Consensus 45 ~~al~~~g~~~-~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 123 (324)
T PF11838_consen 45 LFALARAGRLS-YSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPG 123 (324)
T ss_dssp HHHHHHTTSS--HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--
T ss_pred HHHHHHcCCCC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Q ss_pred HHHHHHHHHHH-HhcCC-----HHHHHHHHHHHHhCCC----CCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 011323 162 VHTYGALIDGC-AKAGQ-----VAKAFGAYGIMRSKNV----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (488)
Q Consensus 162 ~~~~~~l~~~~-~~~~~-----~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 231 (488)
.......++.. ....- .+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++.... .
T Consensus 124 ~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-----~ 198 (324)
T PF11838_consen 124 EDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN-----S 198 (324)
T ss_dssp SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT-----T
T ss_pred ccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc-----c
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCChHHHHHHHHH
Q 011323 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC-SQTGDWEFACSVYDD 294 (488)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~ 294 (488)
++...-..++.+.+...+.+...++++.+...+..++......+.... ......+.+.+.+..
T Consensus 199 ~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 498
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=28.56 E-value=1.5e+02 Score=21.99 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=17.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
++..+...+..-.|.++++.+.+.+...+..|.-.-+..+..
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 334444444444555555555554444444333333333333
No 499
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=28.21 E-value=1.8e+02 Score=19.27 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=16.5
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
.++.+.+.+++++..+.|.+|.......+.-+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455556666666655555555444444444433
No 500
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.13 E-value=7.2e+02 Score=26.10 Aligned_cols=322 Identities=9% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011323 67 FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (488)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 146 (488)
+...+...|+++.|.+....-+..-...+..-...+.+.+++..|-+++.++ ...|..+.--+....+.+ +
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~~~-~ 434 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQER-A 434 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCCHH-H
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 011323 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
+..|-.=+-..++|...+-..++..+.-.-..++--++- .+|.......-.. .+...+-|......
T Consensus 435 L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~--------~~de~~~en~~~~------~~~~~re~~~~~~~ 500 (911)
T KOG2034|consen 435 LRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLD--------STDEEALENWRLE------YDEVQREFSKFLVL 500 (911)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhccc--------ccChhHHHHHHHH------HHHHHHHHHHHHHh
Q ss_pred CCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 011323 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 306 (488)
Q Consensus 227 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 306 (488)
..+.....+..+.+...|+.+....+-..+.+ |..++..+.+.+.+++|++++..- ....
T Consensus 501 ----~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~--~~~e----- 560 (911)
T KOG2034|consen 501 ----HKDELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ--RNPE----- 560 (911)
T ss_pred ----hHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc--cchh-----
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 383 (488)
......--.....+.+....+....+.. +......++..+.+. .....+...++-....-..-++..+|.++..
T Consensus 561 l~yk~ap~Li~~~p~~tV~~wm~~~d~~---~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~l 637 (911)
T KOG2034|consen 561 LFYKYAPELITHSPKETVSAWMAQKDLD---PNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHL 637 (911)
T ss_pred hHHHhhhHHHhcCcHHHHHHHHHccccC---chhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHH
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
|++..+-+.-..+-..+...+- ...-....++.|.+.+....+..++..|.
T Consensus 638 ya~~~~~~ll~~le~~~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 638 YAKHERDDLLLYLEIIKFMKSR--VHYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred hhcCCccchHHHHHHHhhcccc--ceecHHHHHHHHHHhCccceeeeHHHHHH
Done!