Query 011323
Match_columns 488
No_of_seqs 629 out of 3114
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 05:45:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.5E-38 8.5E-43 311.4 43.9 431 33-477 92-585 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.5E-35 5.1E-40 291.6 41.7 397 29-439 121-580 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-29 7.5E-34 233.8 47.5 378 32-423 6-387 (388)
4 4g26_A Pentatricopeptide repea 100.0 4.6E-31 1.6E-35 248.7 25.8 205 252-456 8-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 6.6E-28 2.3E-32 223.8 46.5 360 68-438 6-368 (388)
6 4g26_A Pentatricopeptide repea 100.0 1.5E-30 5E-35 245.3 23.5 187 236-422 28-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 1.9E-23 6.4E-28 197.9 38.9 300 93-402 27-357 (450)
8 2gw1_A Mitochondrial precursor 99.9 6.4E-24 2.2E-28 204.7 36.1 404 28-445 9-483 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 6.3E-23 2.1E-27 194.3 40.0 328 43-382 10-371 (450)
10 2gw1_A Mitochondrial precursor 99.9 2.9E-23 9.9E-28 200.1 38.3 409 61-477 6-484 (514)
11 3fp2_A TPR repeat-containing p 99.9 1.7E-22 5.7E-27 195.9 36.9 395 29-439 29-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 7.8E-21 2.7E-25 184.2 40.0 401 61-477 25-497 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 5.5E-20 1.9E-24 168.4 40.6 314 91-438 2-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 8.9E-20 3E-24 167.0 41.3 318 126-477 2-341 (359)
15 2xm6_A Protein corresponding t 99.9 2.6E-17 8.9E-22 157.1 49.4 365 44-441 26-435 (490)
16 3hym_B Cell division cycle pro 99.9 2.1E-19 7.3E-24 162.5 32.3 285 126-419 21-314 (330)
17 3hym_B Cell division cycle pro 99.9 5.7E-19 1.9E-23 159.7 32.7 292 90-390 20-321 (330)
18 2xm6_A Protein corresponding t 99.9 6.7E-17 2.3E-21 154.3 47.4 351 24-404 38-433 (490)
19 2ooe_A Cleavage stimulation fa 99.9 1.7E-17 5.9E-22 160.0 42.8 408 21-437 9-491 (530)
20 2ooe_A Cleavage stimulation fa 99.9 1.8E-17 6.3E-22 159.8 43.0 421 48-477 2-498 (530)
21 1fch_A Peroxisomal targeting s 99.8 5.5E-19 1.9E-23 162.4 25.7 231 130-366 67-312 (368)
22 1fch_A Peroxisomal targeting s 99.8 1E-18 3.5E-23 160.6 24.4 308 38-363 14-354 (368)
23 3mkr_A Coatomer subunit epsilo 99.8 1.5E-17 5.1E-22 146.6 28.7 258 29-300 3-266 (291)
24 4eqf_A PEX5-related protein; a 99.8 5.3E-18 1.8E-22 155.7 24.8 234 91-331 64-308 (365)
25 4eqf_A PEX5-related protein; a 99.8 4E-18 1.4E-22 156.5 23.4 274 128-434 66-352 (365)
26 1b89_A Protein (clathrin heavy 99.8 2.5E-18 8.6E-23 154.6 19.4 293 28-362 5-305 (449)
27 3cv0_A Peroxisome targeting si 99.8 3.7E-17 1.3E-21 147.4 27.5 227 132-366 26-267 (327)
28 3cv0_A Peroxisome targeting si 99.8 6.2E-17 2.1E-21 146.0 28.8 267 91-365 20-312 (327)
29 1b89_A Protein (clathrin heavy 99.8 2.3E-18 7.8E-23 154.9 18.3 283 72-396 14-304 (449)
30 4g1t_A Interferon-induced prot 99.8 2.2E-16 7.5E-21 150.2 32.9 213 61-279 51-291 (472)
31 1xi4_A Clathrin heavy chain; a 99.8 3.1E-14 1.1E-18 143.1 45.7 376 29-462 989-1375(1630)
32 3mkr_A Coatomer subunit epsilo 99.8 2.8E-16 9.5E-21 138.4 27.4 246 174-437 11-263 (291)
33 3spa_A Mtrpol, DNA-directed RN 99.8 7.2E-18 2.5E-22 163.8 15.9 151 91-248 126-286 (1134)
34 4g1t_A Interferon-induced prot 99.8 1.1E-15 3.9E-20 145.3 30.5 376 35-446 61-468 (472)
35 3spa_A Mtrpol, DNA-directed RN 99.7 7.4E-18 2.5E-22 163.7 13.1 121 336-456 124-248 (1134)
36 1xi4_A Clathrin heavy chain; a 99.7 9.1E-14 3.1E-18 139.8 42.2 312 32-394 1056-1375(1630)
37 3e4b_A ALGK; tetratricopeptide 99.7 1.4E-15 4.6E-20 143.0 26.6 346 27-404 5-388 (452)
38 3uq3_A Heat shock protein STI1 99.7 9E-15 3.1E-19 126.9 24.5 117 318-437 119-235 (258)
39 2pl2_A Hypothetical conserved 99.7 2.7E-15 9.2E-20 126.3 20.2 197 22-224 2-212 (217)
40 3uq3_A Heat shock protein STI1 99.7 1.6E-14 5.6E-19 125.2 25.8 228 162-403 5-236 (258)
41 2pl2_A Hypothetical conserved 99.7 5.5E-15 1.9E-19 124.4 21.5 196 235-436 6-212 (217)
42 3e4b_A ALGK; tetratricopeptide 99.7 8.1E-15 2.8E-19 137.7 24.9 372 67-470 9-420 (452)
43 3u4t_A TPR repeat-containing p 99.7 5.7E-14 2E-18 122.9 24.3 125 169-297 10-136 (272)
44 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-13 5.2E-18 118.7 26.0 200 235-438 38-238 (252)
45 1xnf_A Lipoprotein NLPI; TPR, 99.6 9.4E-15 3.2E-19 128.1 17.0 223 93-327 44-269 (275)
46 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.6E-14 8.9E-19 125.3 19.8 245 106-362 19-269 (275)
47 3u4t_A TPR repeat-containing p 99.6 2.1E-13 7.2E-18 119.3 25.5 195 95-296 6-206 (272)
48 2ho1_A Type 4 fimbrial biogene 99.6 6.7E-13 2.3E-17 114.6 28.0 200 92-297 37-237 (252)
49 2vq2_A PILW, putative fimbrial 99.6 5.8E-13 2E-17 112.7 27.1 95 94-190 10-105 (225)
50 2vq2_A PILW, putative fimbrial 99.6 3.2E-13 1.1E-17 114.3 25.4 198 236-437 10-210 (225)
51 2h6f_A Protein farnesyltransfe 99.6 9.9E-14 3.4E-18 126.3 23.3 242 28-279 100-363 (382)
52 1ouv_A Conserved hypothetical 99.6 2.5E-12 8.7E-17 112.4 31.5 221 199-439 8-252 (273)
53 2h6f_A Protein farnesyltransfe 99.6 3.3E-13 1.1E-17 122.8 26.5 249 91-349 96-363 (382)
54 4e6h_A MRNA 3'-END-processing 99.6 3.2E-11 1.1E-15 117.2 41.1 430 43-477 50-576 (679)
55 1ouv_A Conserved hypothetical 99.6 4.8E-12 1.6E-16 110.7 31.9 223 162-404 6-252 (273)
56 2q7f_A YRRB protein; TPR, prot 99.6 9.8E-14 3.4E-18 119.1 20.7 200 92-298 23-222 (243)
57 2q7f_A YRRB protein; TPR, prot 99.6 1.1E-13 3.8E-18 118.8 21.0 199 235-438 24-222 (243)
58 4e6h_A MRNA 3'-END-processing 99.6 5.5E-11 1.9E-15 115.5 39.2 418 28-454 65-584 (679)
59 3vtx_A MAMA; tetratricopeptide 99.5 2.3E-12 8E-17 105.3 22.3 166 268-437 4-169 (184)
60 3sf4_A G-protein-signaling mod 99.5 3.4E-13 1.1E-17 125.4 18.9 156 270-425 188-363 (406)
61 3sf4_A G-protein-signaling mod 99.5 2.4E-13 8.1E-18 126.4 17.7 300 91-391 8-364 (406)
62 3ulq_A Response regulator aspa 99.5 3.4E-12 1.2E-16 117.6 25.1 232 203-437 109-367 (383)
63 4a1s_A PINS, partner of inscut 99.5 4E-13 1.4E-17 125.2 18.5 277 129-438 50-372 (411)
64 3ulq_A Response regulator aspa 99.5 1.2E-12 4.2E-17 120.6 21.2 307 24-366 11-366 (383)
65 3vtx_A MAMA; tetratricopeptide 99.5 4.4E-12 1.5E-16 103.6 22.1 165 234-402 5-169 (184)
66 4a1s_A PINS, partner of inscut 99.5 4.5E-13 1.5E-17 124.9 18.0 277 94-402 50-371 (411)
67 3ro2_A PINS homolog, G-protein 99.5 8.3E-13 2.8E-17 119.2 17.9 97 341-437 225-331 (338)
68 2ond_A Cleavage stimulation fa 99.5 5.9E-11 2E-15 105.6 29.5 237 197-439 8-271 (308)
69 2ond_A Cleavage stimulation fa 99.5 6E-11 2.1E-15 105.5 29.5 216 109-332 33-269 (308)
70 3ro2_A PINS homolog, G-protein 99.5 1E-12 3.5E-17 118.5 17.3 273 96-402 9-331 (338)
71 4abn_A Tetratricopeptide repea 99.5 3.9E-12 1.3E-16 120.2 19.5 213 213-434 84-317 (474)
72 4abn_A Tetratricopeptide repea 99.5 3.2E-12 1.1E-16 120.9 18.9 214 108-330 84-318 (474)
73 3q15_A PSP28, response regulat 99.4 1.1E-10 3.9E-15 107.2 27.2 230 204-437 108-364 (378)
74 3nf1_A KLC 1, kinesin light ch 99.4 9.1E-13 3.1E-17 117.6 12.6 133 92-224 27-180 (311)
75 3nf1_A KLC 1, kinesin light ch 99.4 9.6E-12 3.3E-16 110.9 17.8 241 196-437 26-306 (311)
76 1hz4_A MALT regulatory protein 99.4 3.5E-10 1.2E-14 103.7 27.9 167 271-437 137-321 (373)
77 3q15_A PSP28, response regulat 99.4 1.7E-10 5.8E-15 106.0 25.0 232 168-402 107-364 (378)
78 4i17_A Hypothetical protein; T 99.4 4.8E-10 1.7E-14 94.9 25.3 131 235-367 8-145 (228)
79 1hz4_A MALT regulatory protein 99.4 8.5E-10 2.9E-14 101.1 28.3 268 99-366 21-320 (373)
80 3as5_A MAMA; tetratricopeptide 99.4 8.8E-11 3E-15 95.7 19.6 162 272-437 11-172 (186)
81 3as5_A MAMA; tetratricopeptide 99.3 3.1E-10 1.1E-14 92.4 21.8 162 61-225 8-172 (186)
82 4gyw_A UDP-N-acetylglucosamine 99.3 8.4E-11 2.9E-15 115.7 19.7 162 236-401 11-172 (723)
83 4gyw_A UDP-N-acetylglucosamine 99.3 1.5E-10 5E-15 113.9 21.2 164 197-367 9-173 (723)
84 4i17_A Hypothetical protein; T 99.3 7.5E-10 2.6E-14 93.7 21.3 195 195-402 5-208 (228)
85 3edt_B KLC 2, kinesin light ch 99.2 8.3E-11 2.8E-15 103.1 13.7 230 208-437 12-280 (283)
86 3edt_B KLC 2, kinesin light ch 99.2 2.9E-10 9.9E-15 99.6 15.2 87 139-225 13-113 (283)
87 3mv2_B Coatomer subunit epsilo 99.2 4.5E-09 1.6E-13 90.7 21.1 251 26-299 14-283 (310)
88 2r5s_A Uncharacterized protein 99.2 1.3E-09 4.6E-14 87.9 15.5 164 23-189 4-171 (176)
89 1qqe_A Vesicular transport pro 99.2 2.6E-09 9E-14 94.0 18.6 129 306-436 119-267 (292)
90 3urz_A Uncharacterized protein 99.1 2.1E-09 7.1E-14 89.4 16.0 191 27-242 6-198 (208)
91 2uy1_A Cleavage stimulation fa 99.1 1.2E-07 4.1E-12 89.5 29.6 363 38-437 7-412 (493)
92 2fo7_A Synthetic consensus TPR 99.1 5.8E-09 2E-13 79.7 17.2 128 307-437 4-131 (136)
93 2fo7_A Synthetic consensus TPR 99.1 7.9E-09 2.7E-13 78.9 17.8 129 94-225 3-131 (136)
94 2pzi_A Probable serine/threoni 99.1 1.2E-09 4.2E-14 107.9 16.5 170 36-212 402-583 (681)
95 3qky_A Outer membrane assembly 99.1 1.2E-08 4E-13 88.3 20.8 182 236-439 17-225 (261)
96 3mv2_B Coatomer subunit epsilo 99.1 1.6E-08 5.4E-13 87.3 21.0 248 169-444 20-286 (310)
97 3qky_A Outer membrane assembly 99.1 6.2E-09 2.1E-13 90.1 18.9 101 125-226 13-126 (261)
98 1qqe_A Vesicular transport pro 99.1 3.9E-09 1.3E-13 92.9 17.4 132 306-437 79-227 (292)
99 3urz_A Uncharacterized protein 99.1 5.2E-09 1.8E-13 87.0 16.9 136 310-451 60-197 (208)
100 3qou_A Protein YBBN; thioredox 99.1 4.9E-09 1.7E-13 91.9 17.2 158 28-188 120-281 (287)
101 4ga2_A E3 SUMO-protein ligase 99.1 6.2E-09 2.1E-13 81.3 15.1 143 67-212 3-149 (150)
102 3rjv_A Putative SEL1 repeat pr 99.0 7.1E-08 2.4E-12 80.3 21.9 178 252-441 4-200 (212)
103 2pzi_A Probable serine/threoni 99.0 1.3E-08 4.6E-13 100.5 19.1 173 245-424 402-583 (681)
104 4ga2_A E3 SUMO-protein ligase 99.0 3E-09 1E-13 83.1 10.9 137 37-177 9-149 (150)
105 2yhc_A BAMD, UPF0169 lipoprote 99.0 9.4E-08 3.2E-12 80.4 20.1 184 236-439 6-214 (225)
106 3qou_A Protein YBBN; thioredox 99.0 2.5E-08 8.5E-13 87.4 17.0 162 127-294 117-280 (287)
107 2r5s_A Uncharacterized protein 99.0 1.3E-08 4.6E-13 82.0 13.9 160 237-400 9-170 (176)
108 2yhc_A BAMD, UPF0169 lipoprote 99.0 6.8E-08 2.3E-12 81.3 18.8 183 93-300 5-215 (225)
109 3dra_A Protein farnesyltransfe 99.0 1.3E-06 4.6E-11 76.1 27.2 221 105-332 46-286 (306)
110 2vsy_A XCC0866; transferase, g 99.0 1.4E-08 4.8E-13 98.6 16.4 151 38-192 2-158 (568)
111 3dra_A Protein farnesyltransfe 99.0 1.2E-06 4.2E-11 76.4 26.7 215 179-401 50-285 (306)
112 3rjv_A Putative SEL1 repeat pr 98.9 2.1E-07 7.1E-12 77.4 20.9 174 110-299 4-198 (212)
113 2uy1_A Cleavage stimulation fa 98.9 4.2E-06 1.4E-10 79.0 31.9 343 106-470 28-412 (493)
114 2vsy_A XCC0866; transferase, g 98.9 3.2E-08 1.1E-12 96.1 17.6 154 210-369 2-158 (568)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.1E-07 1.1E-11 76.4 19.8 128 63-192 8-151 (213)
116 2ifu_A Gamma-SNAP; membrane fu 98.9 9E-08 3.1E-12 84.8 17.1 183 243-430 45-253 (307)
117 2ifu_A Gamma-SNAP; membrane fu 98.9 4.9E-08 1.7E-12 86.6 15.2 228 37-290 3-253 (307)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4E-07 1.4E-11 75.7 18.2 125 272-402 9-149 (213)
119 4gco_A Protein STI-1; structur 98.8 2.2E-07 7.5E-12 69.9 13.5 96 340-437 14-109 (126)
120 3q7a_A Farnesyltransferase alp 98.7 1.4E-05 4.9E-10 70.4 26.2 182 96-284 58-257 (349)
121 1a17_A Serine/threonine protei 98.7 6.4E-07 2.2E-11 71.0 16.0 126 307-435 16-143 (166)
122 3u3w_A Transcriptional activat 98.7 1.9E-06 6.6E-11 75.6 20.3 159 241-400 82-263 (293)
123 4gco_A Protein STI-1; structur 98.7 7.9E-07 2.7E-11 66.8 15.3 97 93-191 14-110 (126)
124 1na0_A Designed protein CTPR3; 98.7 9.4E-07 3.2E-11 66.0 15.8 113 92-207 9-121 (125)
125 1a17_A Serine/threonine protei 98.7 1E-06 3.5E-11 69.8 16.6 128 93-223 14-143 (166)
126 3u3w_A Transcriptional activat 98.7 2.7E-06 9.1E-11 74.8 20.7 162 204-366 82-264 (293)
127 3dss_A Geranylgeranyl transfer 98.7 1.4E-05 4.8E-10 70.1 24.8 184 37-225 41-266 (331)
128 3gyz_A Chaperone protein IPGC; 98.7 3.3E-07 1.1E-11 71.1 12.7 103 91-197 35-137 (151)
129 2e2e_A Formate-dependent nitri 98.7 3.5E-07 1.2E-11 73.6 13.0 120 316-438 22-144 (177)
130 2vgx_A Chaperone SYCD; alterna 98.7 2.6E-07 9E-12 71.7 11.8 99 338-438 20-118 (148)
131 3q7a_A Farnesyltransferase alp 98.7 2.3E-05 7.8E-10 69.2 25.2 185 250-438 105-331 (349)
132 2e2e_A Formate-dependent nitri 98.7 2E-07 6.7E-12 75.1 11.3 119 35-156 20-144 (177)
133 2qfc_A PLCR protein; TPR, HTH, 98.7 7.3E-06 2.5E-10 71.9 22.0 125 240-365 81-222 (293)
134 2qfc_A PLCR protein; TPR, HTH, 98.7 4E-06 1.4E-10 73.6 20.3 168 270-437 76-265 (293)
135 3gyz_A Chaperone protein IPGC; 98.6 2.6E-07 8.8E-12 71.7 11.0 100 338-439 35-134 (151)
136 2c2l_A CHIP, carboxy terminus 98.6 8.9E-07 3E-11 77.2 15.6 191 268-470 3-198 (281)
137 2vyi_A SGTA protein; chaperone 98.6 1.3E-06 4.6E-11 65.8 14.8 118 92-212 12-129 (131)
138 1na0_A Designed protein CTPR3; 98.6 1.6E-06 5.6E-11 64.6 15.0 92 308-401 13-104 (125)
139 2c2l_A CHIP, carboxy terminus 98.6 8.1E-07 2.8E-11 77.4 14.5 96 127-224 4-99 (281)
140 2lni_A Stress-induced-phosphop 98.6 1.3E-06 4.5E-11 66.2 14.1 117 90-209 14-130 (133)
141 2vyi_A SGTA protein; chaperone 98.6 1.3E-06 4.3E-11 65.9 13.7 94 307-402 15-108 (131)
142 3gw4_A Uncharacterized protein 98.6 5.3E-07 1.8E-11 74.3 12.5 156 281-438 4-176 (203)
143 2lni_A Stress-induced-phosphop 98.6 1.3E-06 4.6E-11 66.1 13.6 93 307-401 19-111 (133)
144 4f3v_A ESX-1 secretion system 98.6 2.2E-06 7.6E-11 73.0 15.9 185 37-226 18-237 (282)
145 3gw4_A Uncharacterized protein 98.6 5.4E-07 1.9E-11 74.2 12.0 131 92-223 26-173 (203)
146 2vgx_A Chaperone SYCD; alterna 98.5 3.5E-07 1.2E-11 71.0 9.3 98 92-191 21-118 (148)
147 1p5q_A FKBP52, FK506-binding p 98.5 2.5E-06 8.5E-11 76.5 16.0 129 306-436 149-292 (336)
148 3upv_A Heat shock protein STI1 98.5 2.5E-06 8.5E-11 64.0 13.7 97 339-437 4-100 (126)
149 4f3v_A ESX-1 secretion system 98.5 1.7E-06 5.9E-11 73.7 13.7 131 31-166 108-245 (282)
150 3dss_A Geranylgeranyl transfer 98.5 7.4E-05 2.5E-09 65.6 24.3 170 208-385 40-238 (331)
151 1elw_A TPR1-domain of HOP; HOP 98.5 9.3E-06 3.2E-10 59.7 16.4 98 92-191 4-101 (118)
152 4gcn_A Protein STI-1; structur 98.5 1.6E-06 5.4E-11 65.3 12.0 98 340-438 9-112 (127)
153 3sz7_A HSC70 cochaperone (SGT) 98.5 3.2E-06 1.1E-10 66.9 14.2 100 337-438 9-108 (164)
154 2xcb_A PCRH, regulatory protei 98.5 3.9E-06 1.3E-10 64.6 13.9 98 339-438 18-115 (142)
155 1p5q_A FKBP52, FK506-binding p 98.5 3.5E-06 1.2E-10 75.5 15.4 131 269-401 147-292 (336)
156 2fbn_A 70 kDa peptidylprolyl i 98.5 2.3E-07 7.9E-12 76.3 6.8 88 340-429 89-176 (198)
157 3upv_A Heat shock protein STI1 98.5 7.4E-06 2.5E-10 61.4 14.6 97 93-191 5-101 (126)
158 2fbn_A 70 kDa peptidylprolyl i 98.4 1.1E-06 3.7E-11 72.2 10.2 142 73-217 16-176 (198)
159 1elw_A TPR1-domain of HOP; HOP 98.4 1.5E-05 5.1E-10 58.6 15.7 94 307-402 7-100 (118)
160 4gcn_A Protein STI-1; structur 98.4 5.3E-06 1.8E-10 62.3 12.9 104 94-200 10-119 (127)
161 2xcb_A PCRH, regulatory protei 98.4 3.8E-06 1.3E-10 64.6 11.9 97 93-191 19-115 (142)
162 4b4t_Q 26S proteasome regulato 98.4 1.9E-05 6.3E-10 73.7 18.9 198 26-223 5-242 (434)
163 3q49_B STIP1 homology and U bo 98.4 1.9E-05 6.4E-10 60.1 15.8 100 337-438 7-106 (137)
164 2kck_A TPR repeat; tetratricop 98.4 3.7E-06 1.3E-10 61.3 11.1 96 341-438 8-106 (112)
165 1elr_A TPR2A-domain of HOP; HO 98.4 6E-06 2E-10 62.1 12.1 111 92-205 4-120 (131)
166 2kck_A TPR repeat; tetratricop 98.4 8.1E-06 2.8E-10 59.4 12.4 95 129-225 8-105 (112)
167 1elr_A TPR2A-domain of HOP; HO 98.3 5.1E-06 1.7E-10 62.5 11.1 95 342-437 7-107 (131)
168 3q49_B STIP1 homology and U bo 98.3 2.2E-05 7.4E-10 59.7 14.6 97 91-189 8-104 (137)
169 4b4t_Q 26S proteasome regulato 98.3 8.9E-05 3E-09 69.0 21.7 197 169-366 11-243 (434)
170 2dba_A Smooth muscle cell asso 98.3 3.5E-05 1.2E-09 59.3 15.6 99 90-191 26-128 (148)
171 3sz7_A HSC70 cochaperone (SGT) 98.3 2E-05 6.8E-10 62.3 14.2 99 91-191 10-108 (164)
172 1hxi_A PEX5, peroxisome target 98.3 1.3E-05 4.6E-10 59.4 11.9 94 96-191 21-114 (121)
173 1hxi_A PEX5, peroxisome target 98.3 7.4E-06 2.5E-10 60.9 10.4 92 344-437 22-113 (121)
174 2dba_A Smooth muscle cell asso 98.3 4.5E-05 1.5E-09 58.7 15.3 94 270-366 29-126 (148)
175 3k9i_A BH0479 protein; putativ 98.2 1.1E-06 3.6E-11 65.1 4.4 86 352-438 3-90 (117)
176 3rkv_A Putative peptidylprolyl 98.2 1.9E-05 6.4E-10 62.2 11.8 102 341-445 13-131 (162)
177 2xev_A YBGF; tetratricopeptide 98.1 0.00013 4.6E-09 54.5 15.0 92 98-191 8-105 (129)
178 3ro3_A PINS homolog, G-protein 98.1 2.6E-05 9E-10 61.0 11.5 132 306-437 11-157 (164)
179 3rkv_A Putative peptidylprolyl 98.1 4.4E-05 1.5E-09 60.1 12.5 69 338-409 62-130 (162)
180 1wao_1 Serine/threonine protei 98.1 1.8E-05 6.2E-10 74.5 11.9 121 275-398 12-134 (477)
181 2xev_A YBGF; tetratricopeptide 98.1 0.00012 4E-09 54.8 14.3 23 344-366 44-66 (129)
182 3ro3_A PINS homolog, G-protein 98.1 2.6E-05 9E-10 61.1 10.7 131 94-224 11-156 (164)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 5.7E-05 1.9E-09 70.8 14.3 96 339-436 317-413 (457)
184 1ihg_A Cyclophilin 40; ppiase 98.1 6.4E-05 2.2E-09 68.1 14.1 119 307-427 226-359 (370)
185 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 9.4E-05 3.2E-09 69.3 15.2 122 93-217 269-405 (457)
186 1wao_1 Serine/threonine protei 98.0 1.8E-05 6E-10 74.6 10.1 119 100-221 14-134 (477)
187 1ihg_A Cyclophilin 40; ppiase 98.0 9.2E-05 3.1E-09 67.1 13.6 121 94-216 225-360 (370)
188 3k9i_A BH0479 protein; putativ 98.0 2.7E-05 9.1E-10 57.4 8.1 86 105-191 3-90 (117)
189 2if4_A ATFKBP42; FKBP-like, al 98.0 2.9E-05 1E-09 69.5 9.5 151 304-476 179-333 (338)
190 2hr2_A Hypothetical protein; a 97.9 0.00044 1.5E-08 53.0 14.1 110 342-451 14-149 (159)
191 2if4_A ATFKBP42; FKBP-like, al 97.9 6E-05 2.1E-09 67.5 9.7 148 269-438 179-328 (338)
192 2hr2_A Hypothetical protein; a 97.9 0.00029 9.8E-09 54.1 11.8 94 308-402 15-130 (159)
193 1dce_A Protein (RAB geranylger 97.8 0.0015 5.1E-08 62.7 19.3 172 37-213 40-242 (567)
194 1klx_A Cysteine rich protein B 97.8 0.0012 4.3E-08 49.9 14.8 17 422-438 110-126 (138)
195 1dce_A Protein (RAB geranylger 97.8 0.0035 1.2E-07 60.2 21.1 173 106-285 43-242 (567)
196 2l6j_A TPR repeat-containing p 97.8 2.3E-05 8E-10 56.9 4.7 61 341-402 6-66 (111)
197 3n71_A Histone lysine methyltr 97.8 8.3E-05 2.8E-09 69.6 9.4 99 93-191 352-464 (490)
198 1klx_A Cysteine rich protein B 97.8 0.0013 4.4E-08 49.9 14.6 87 312-404 33-127 (138)
199 3n71_A Histone lysine methyltr 97.7 0.00017 5.9E-09 67.4 11.1 126 313-438 318-464 (490)
200 1zu2_A Mitochondrial import re 97.7 0.00011 3.7E-09 56.3 7.2 97 354-455 17-135 (158)
201 1zu2_A Mitochondrial import re 97.7 0.0004 1.4E-08 53.1 10.0 106 36-167 13-129 (158)
202 1na3_A Designed protein CTPR2; 97.6 0.00087 3E-08 46.2 11.1 62 94-156 11-72 (91)
203 1na3_A Designed protein CTPR2; 97.6 0.00061 2.1E-08 47.0 10.0 62 340-402 10-71 (91)
204 2l6j_A TPR repeat-containing p 97.6 0.00037 1.3E-08 50.3 8.9 93 303-397 3-101 (111)
205 2kat_A Uncharacterized protein 97.6 0.00079 2.7E-08 49.1 10.7 78 358-437 4-81 (115)
206 2kat_A Uncharacterized protein 97.6 0.00075 2.6E-08 49.2 10.5 79 110-190 3-81 (115)
207 3ly7_A Transcriptional activat 97.4 0.009 3.1E-07 52.7 16.5 75 124-202 274-348 (372)
208 3ma5_A Tetratricopeptide repea 97.4 0.0011 3.6E-08 47.0 8.7 64 373-437 6-69 (100)
209 3ma5_A Tetratricopeptide repea 97.3 0.0022 7.5E-08 45.3 9.3 62 92-154 7-68 (100)
210 1pc2_A Mitochondria fission pr 97.2 0.0057 1.9E-07 46.3 11.1 96 355-454 14-114 (152)
211 2kc7_A BFR218_protein; tetratr 97.0 0.0031 1.1E-07 44.2 8.1 57 381-438 7-64 (99)
212 3mkq_A Coatomer beta'-subunit; 96.9 0.023 7.9E-07 57.5 16.5 47 137-189 662-708 (814)
213 3ly7_A Transcriptional activat 96.9 0.018 6.3E-07 50.8 13.1 63 338-402 276-338 (372)
214 2kc7_A BFR218_protein; tetratr 96.6 0.018 6.2E-07 40.1 9.2 55 101-156 9-64 (99)
215 3mkq_A Coatomer beta'-subunit; 96.6 0.15 5E-06 51.6 19.4 153 101-294 608-761 (814)
216 3qww_A SET and MYND domain-con 96.5 0.0086 2.9E-07 55.0 9.0 61 163-223 341-408 (433)
217 3qww_A SET and MYND domain-con 96.5 0.0083 2.8E-07 55.1 8.9 84 317-400 311-408 (433)
218 3qwp_A SET and MYND domain-con 96.5 0.017 5.9E-07 53.1 10.9 26 411-436 373-398 (429)
219 3bee_A Putative YFRE protein; 96.5 0.03 1E-06 38.6 9.5 48 108-156 25-72 (93)
220 3qwp_A SET and MYND domain-con 96.4 0.015 5E-07 53.6 9.7 86 139-224 299-398 (429)
221 3bee_A Putative YFRE protein; 96.4 0.059 2E-06 37.1 10.5 67 371-438 3-72 (93)
222 1nzn_A CGI-135 protein, fissio 96.4 0.066 2.3E-06 38.9 10.8 96 353-452 15-115 (126)
223 1pc2_A Mitochondria fission pr 96.2 0.042 1.5E-06 41.5 9.4 84 321-408 15-103 (152)
224 3u64_A Protein TP_0956; tetrat 96.2 0.2 6.9E-06 42.4 14.2 81 144-226 180-269 (301)
225 3u64_A Protein TP_0956; tetrat 95.8 0.1 3.4E-06 44.2 11.0 92 355-450 179-283 (301)
226 2v5f_A Prolyl 4-hydroxylase su 95.8 0.052 1.8E-06 38.3 8.2 63 340-402 6-74 (104)
227 4h7y_A Dual specificity protei 95.7 0.36 1.2E-05 36.1 12.2 114 89-205 10-136 (161)
228 2v5f_A Prolyl 4-hydroxylase su 95.7 0.087 3E-06 37.2 9.1 66 91-156 4-75 (104)
229 4h7y_A Dual specificity protei 95.6 0.12 4E-06 38.6 9.3 105 338-444 12-129 (161)
230 3mkq_B Coatomer subunit alpha; 95.6 0.59 2E-05 36.3 17.0 45 173-223 16-60 (177)
231 1wy6_A Hypothetical protein ST 95.2 0.6 2.1E-05 34.1 13.5 84 352-441 74-157 (172)
232 1nzn_A CGI-135 protein, fissio 94.9 0.2 6.8E-06 36.4 8.6 87 318-408 15-106 (126)
233 3mkq_B Coatomer subunit alpha; 94.8 1.1 3.8E-05 34.8 16.9 23 164-186 36-58 (177)
234 3o48_A Mitochondria fission 1 94.3 1.1 3.6E-05 32.8 11.2 82 371-454 37-121 (134)
235 4fhn_B Nucleoporin NUP120; pro 94.1 2.8 9.5E-05 44.1 18.6 87 127-215 899-989 (1139)
236 4b4t_P 26S proteasome regulato 93.0 5.5 0.00019 36.6 19.1 162 307-468 140-321 (445)
237 4gns_B Protein CSD3, chitin bi 92.5 0.95 3.3E-05 44.5 11.2 51 384-435 347-397 (754)
238 1wy6_A Hypothetical protein ST 92.3 2.4 8.4E-05 31.0 17.3 61 273-334 95-155 (172)
239 3lvg_A Clathrin heavy chain 1; 92.2 0.00078 2.7E-08 60.8 -9.5 211 63-293 56-286 (624)
240 2ff4_A Probable regulatory pro 91.8 3.8 0.00013 36.9 13.7 58 342-400 174-231 (388)
241 1v54_E Cytochrome C oxidase po 91.8 1.8 6.1E-05 29.7 8.4 65 389-454 25-89 (109)
242 2ff4_A Probable regulatory pro 91.8 1 3.4E-05 40.8 9.9 74 129-203 173-251 (388)
243 4b4t_P 26S proteasome regulato 91.6 8.1 0.00028 35.5 19.6 97 201-297 141-246 (445)
244 4gns_B Protein CSD3, chitin bi 91.5 1.3 4.6E-05 43.4 10.9 52 313-365 346-397 (754)
245 3lpz_A GET4 (YOR164C homolog); 91.0 7.3 0.00025 33.9 20.5 187 27-261 14-214 (336)
246 1y8m_A FIS1; mitochondria, unk 90.9 3.8 0.00013 30.4 13.1 81 371-453 36-119 (144)
247 1v54_E Cytochrome C oxidase po 90.8 2.8 9.6E-05 28.7 9.3 48 355-402 26-73 (109)
248 4fhn_B Nucleoporin NUP120; pro 90.5 11 0.00037 39.7 17.4 55 165-224 815-869 (1139)
249 3o48_A Mitochondria fission 1 90.2 4.2 0.00014 29.7 9.8 73 334-408 35-110 (134)
250 4ady_A RPN2, 26S proteasome re 89.4 20 0.00068 36.3 30.1 156 243-402 499-657 (963)
251 2y69_E Cytochrome C oxidase su 89.1 4.8 0.00016 29.3 9.2 63 391-454 70-132 (152)
252 2y69_E Cytochrome C oxidase su 89.1 5 0.00017 29.2 9.3 62 354-416 68-129 (152)
253 2wpv_A GET4, UPF0363 protein Y 88.9 11 0.00037 32.6 19.8 189 25-261 13-215 (312)
254 2uwj_G Type III export protein 88.2 4.6 0.00016 27.5 9.8 86 39-130 20-105 (115)
255 3lvg_A Clathrin heavy chain 1; 87.0 0.00028 9.7E-09 63.6 -16.5 116 93-223 55-170 (624)
256 1zbp_A Hypothetical protein VP 85.7 1.3 4.4E-05 37.0 5.4 55 32-88 4-58 (273)
257 1y8m_A FIS1; mitochondria, unk 84.7 10 0.00035 28.1 12.3 71 336-408 36-109 (144)
258 2p58_C Putative type III secre 84.6 7.6 0.00026 26.5 8.2 50 137-192 50-99 (116)
259 2p58_C Putative type III secre 84.6 7.6 0.00026 26.5 10.0 86 39-130 21-106 (116)
260 2uwj_G Type III export protein 84.1 7.1 0.00024 26.6 7.3 51 136-192 48-98 (115)
261 3ffl_A Anaphase-promoting comp 82.9 8.2 0.00028 29.5 8.3 120 94-226 22-151 (167)
262 4b4t_R RPN7, 26S proteasome re 82.1 30 0.001 31.6 13.9 97 236-332 133-236 (429)
263 1qsa_A Protein (soluble lytic 81.9 38 0.0013 32.6 35.9 80 62-143 73-152 (618)
264 3ffl_A Anaphase-promoting comp 81.5 5.9 0.0002 30.3 7.1 25 29-53 67-91 (167)
265 1zbp_A Hypothetical protein VP 79.9 6.7 0.00023 32.8 7.5 118 347-477 5-135 (273)
266 4b4t_R RPN7, 26S proteasome re 79.6 9.6 0.00033 34.9 9.4 99 199-297 133-236 (429)
267 3esl_A Checkpoint serine/threo 79.5 21 0.00073 28.2 10.9 56 106-161 93-149 (202)
268 4ady_A RPN2, 26S proteasome re 75.1 76 0.0026 32.3 34.5 85 33-120 153-258 (963)
269 3esl_A Checkpoint serine/threo 75.1 6.1 0.00021 31.3 5.7 60 28-87 79-141 (202)
270 1qsa_A Protein (soluble lytic 74.0 65 0.0022 31.0 36.1 377 29-432 10-436 (618)
271 3lpz_A GET4 (YOR164C homolog); 68.1 61 0.0021 28.2 21.2 166 271-469 37-214 (336)
272 3txn_A 26S proteasome regulato 67.0 71 0.0024 28.6 22.4 242 198-447 20-292 (394)
273 3ltj_A Alpharep-4; protein eng 66.2 45 0.0016 26.1 19.6 112 89-212 25-136 (201)
274 3ltm_A Alpha-REP4; protein eng 65.6 48 0.0017 26.2 16.6 171 90-282 31-201 (211)
275 4a1g_A Mitotic checkpoint seri 65.2 41 0.0014 25.2 10.0 50 111-160 84-134 (152)
276 1k1a_A B-cell lymphoma 3-encod 59.1 51 0.0017 26.5 8.9 25 135-159 14-38 (241)
277 2wvi_A Mitotic checkpoint seri 58.9 58 0.002 24.8 10.8 54 110-163 78-132 (164)
278 3ltm_A Alpha-REP4; protein eng 58.9 65 0.0022 25.4 19.5 170 125-316 31-200 (211)
279 4a1g_A Mitotic checkpoint seri 58.7 55 0.0019 24.5 9.4 55 391-445 82-137 (152)
280 2zu6_B Programmed cell death p 57.7 88 0.003 26.9 10.0 65 237-302 169-235 (307)
281 4aez_C MAD3, mitotic spindle c 57.5 10 0.00036 30.6 3.9 44 43-86 132-175 (223)
282 4aez_C MAD3, mitotic spindle c 54.7 84 0.0029 25.4 9.2 51 145-195 132-183 (223)
283 2d2s_A Exocyst complex compone 54.6 85 0.0029 25.7 9.0 27 196-222 90-116 (235)
284 2nsz_A Programmed cell death p 51.1 67 0.0023 23.2 7.2 24 273-296 11-34 (129)
285 2d2s_A Exocyst complex compone 49.5 1.1E+02 0.0036 25.1 9.9 89 98-189 24-118 (235)
286 2wpv_A GET4, UPF0363 protein Y 47.6 1.4E+02 0.0046 25.8 20.9 25 303-327 133-157 (312)
287 4b4t_S RPN3, 26S proteasome re 47.4 58 0.002 30.3 7.6 61 93-156 232-299 (523)
288 3kae_A CDC27, possible protein 46.6 98 0.0033 23.8 8.0 155 206-371 71-240 (242)
289 3txn_A 26S proteasome regulato 44.6 1.7E+02 0.0059 26.1 28.1 224 202-439 104-344 (394)
290 3hra_A Ankyrin repeat family p 43.9 41 0.0014 26.2 5.6 15 208-222 80-94 (201)
291 3eiq_C Programmed cell death p 43.2 1.7E+02 0.0059 25.7 12.4 67 272-339 220-288 (358)
292 1oai_A Nuclear RNA export fact 43.1 54 0.0018 19.8 4.6 31 31-61 25-56 (59)
293 2ion_A PDCD4, programmed cell 43.0 58 0.002 24.4 5.8 24 273-296 13-36 (152)
294 1wdy_A 2-5A-dependent ribonucl 42.9 47 0.0016 27.6 6.2 9 136-144 11-19 (285)
295 3eiq_C Programmed cell death p 42.7 1.8E+02 0.006 25.7 14.3 70 341-411 219-290 (358)
296 2ion_A PDCD4, programmed cell 42.2 1.1E+02 0.0036 23.0 7.6 24 201-224 13-36 (152)
297 1k1a_A B-cell lymphoma 3-encod 41.7 91 0.0031 25.0 7.7 11 210-220 19-29 (241)
298 2r9g_A AAA ATPase, central reg 40.7 1.3E+02 0.0046 23.7 9.5 32 283-315 28-59 (204)
299 2xig_A Ferric uptake regulatio 40.1 1.1E+02 0.0039 22.7 7.2 58 295-353 18-75 (150)
300 3bge_A Predicted ATPase; struc 39.2 1.4E+02 0.0048 23.5 9.2 33 283-315 21-53 (201)
301 2fe3_A Peroxide operon regulat 37.2 1.2E+02 0.0041 22.4 6.9 62 116-178 11-72 (145)
302 1n11_A Ankyrin; clathrin, BAND 36.8 99 0.0034 27.9 7.8 16 171-186 119-134 (437)
303 1wdy_A 2-5A-dependent ribonucl 36.1 91 0.0031 25.7 7.0 13 99-111 9-21 (285)
304 1mzb_A Ferric uptake regulatio 36.1 1.1E+02 0.0038 22.2 6.4 57 296-353 10-67 (136)
305 4b4t_S RPN3, 26S proteasome re 35.5 1.6E+02 0.0053 27.6 8.4 65 162-226 231-299 (523)
306 4gq2_M Nucleoporin NUP120; bet 35.4 3.2E+02 0.011 28.0 11.7 131 67-211 816-950 (950)
307 4gq2_M Nucleoporin NUP120; bet 35.2 3.7E+02 0.013 27.5 12.1 128 31-176 816-950 (950)
308 3eu9_A Huntingtin-interacting 34.9 51 0.0017 26.4 5.0 8 244-251 184-191 (240)
309 2xig_A Ferric uptake regulatio 34.8 1.4E+02 0.0048 22.2 8.2 61 117-178 17-77 (150)
310 3ctd_A Putative ATPase, AAA fa 34.5 1.7E+02 0.006 23.2 8.8 33 283-315 49-81 (213)
311 2w57_A Ferric uptake regulatio 33.8 1.2E+02 0.0041 22.5 6.4 35 319-353 32-66 (150)
312 2fu4_A Ferric uptake regulatio 33.7 95 0.0032 19.9 6.6 58 118-176 8-66 (83)
313 3eyy_A Putative iron uptake re 33.1 99 0.0034 22.8 5.8 57 295-353 10-66 (145)
314 4ets_A Ferric uptake regulatio 33.0 1.2E+02 0.0041 22.9 6.3 61 117-178 23-85 (162)
315 2zu6_B Programmed cell death p 32.6 2.4E+02 0.0081 24.2 10.3 25 130-154 6-30 (307)
316 3eyy_A Putative iron uptake re 32.5 1.2E+02 0.0041 22.4 6.2 60 258-319 8-67 (145)
317 2w57_A Ferric uptake regulatio 32.1 1.6E+02 0.0053 21.9 6.9 61 258-319 6-67 (150)
318 1mzb_A Ferric uptake regulatio 31.8 1.5E+02 0.005 21.5 7.1 60 259-319 8-68 (136)
319 2b7e_A PRE-mRNA processing pro 31.4 43 0.0015 20.3 2.7 29 109-137 3-31 (59)
320 2f6m_A Suppressor protein STP2 31.0 96 0.0033 19.2 4.5 42 131-173 6-47 (65)
321 2fe3_A Peroxide operon regulat 30.8 1.6E+02 0.0055 21.7 7.9 39 316-354 33-71 (145)
322 3jxi_A Vanilloid receptor-rela 29.8 67 0.0023 26.3 4.9 26 101-126 11-36 (260)
323 3kea_A K1L; tropism, ANK repea 29.2 1.2E+02 0.0041 25.4 6.5 16 395-410 209-224 (285)
324 4ets_A Ferric uptake regulatio 29.0 1.3E+02 0.0045 22.7 6.0 43 311-353 39-83 (162)
325 2ijq_A Hypothetical protein; s 28.6 1.9E+02 0.0066 21.9 8.4 50 317-366 45-102 (161)
326 3pvs_A Replication-associated 28.6 3.4E+02 0.012 24.7 12.9 38 351-388 267-304 (447)
327 3ygs_P Procaspase 9; apoptosis 27.5 83 0.0028 21.3 4.1 37 75-111 51-87 (97)
328 3jxi_A Vanilloid receptor-rela 26.4 24 0.00081 29.2 1.5 56 134-189 9-73 (260)
329 3fap_B FRAP, FKBP12-rapamycin 26.4 1.5E+02 0.0052 20.0 5.1 16 384-399 20-35 (94)
330 3eu9_A Huntingtin-interacting 25.9 51 0.0018 26.4 3.5 15 419-433 217-231 (240)
331 3t8k_A Uncharacterized protein 25.9 2.3E+02 0.0077 21.8 9.9 63 134-196 42-108 (186)
332 2o03_A Probable zinc uptake re 25.6 1.3E+02 0.0045 21.6 5.2 37 140-176 23-59 (131)
333 3ljn_A Hypothetical protein; a 25.3 1.9E+02 0.0067 25.0 7.4 218 201-434 21-266 (364)
334 3mwm_A ZUR, putative metal upt 25.0 1.2E+02 0.0041 22.1 5.0 42 135-176 21-62 (139)
335 1bpo_A Protein (clathrin); cla 24.9 4.1E+02 0.014 24.4 9.8 110 247-361 342-451 (494)
336 1oyz_A Hypothetical protein YI 24.9 2.9E+02 0.0099 22.7 23.9 50 160-212 103-157 (280)
337 3hra_A Ankyrin repeat family p 23.7 1.2E+02 0.0041 23.4 5.2 15 243-257 78-92 (201)
338 3ygs_P Procaspase 9; apoptosis 23.6 1.7E+02 0.0059 19.7 5.7 12 321-332 54-65 (97)
339 3qc1_A Immunoglobulin-binding 23.4 2.5E+02 0.0086 23.0 6.9 56 425-480 37-92 (243)
340 1wgl_A TOLL-interacting protei 23.2 1.3E+02 0.0043 18.2 3.8 13 211-223 37-49 (59)
341 3i5p_A Nucleoporin NUP170; hel 23.1 4.6E+02 0.016 24.5 9.4 31 127-157 217-247 (525)
342 2ijq_A Hypothetical protein; s 22.9 2.5E+02 0.0086 21.3 8.4 60 272-332 36-103 (161)
343 3kea_A K1L; tropism, ANK repea 22.6 1.2E+02 0.0042 25.3 5.3 18 241-258 165-182 (285)
344 2o03_A Probable zinc uptake re 22.5 1.6E+02 0.0053 21.2 5.1 45 168-212 16-60 (131)
345 3mwm_A ZUR, putative metal upt 21.9 1.4E+02 0.0046 21.9 4.7 36 318-353 27-62 (139)
346 2keb_A DNA polymerase subunit 21.1 2E+02 0.0069 19.5 7.1 32 110-141 27-58 (101)
347 2wvi_A Mitotic checkpoint seri 20.5 2.8E+02 0.0097 21.0 12.5 58 391-448 77-135 (164)
348 2cos_A Serine/threonine protei 20.2 99 0.0034 18.2 2.7 18 418-435 29-48 (54)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-38 Score=311.37 Aligned_cols=431 Identities=9% Similarity=-0.036 Sum_probs=374.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC--CCCCHHHHHHHHHHHHhcCChhH
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMSVCASSKDSEG 110 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 110 (488)
..+.++|++++|+.+|+++.... |++ .....++..+...|++++|+.+|+++ .+++..+++.++..|.+.|++++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDIT--GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHccCchHHHHHHHHHHhhC--CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHH
Confidence 44457999999999999998765 444 55567889999999999999999998 46889999999999999999999
Q ss_pred HHHHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH-------
Q 011323 111 AFQVLRLVQ-EA--------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL------- 168 (488)
Q Consensus 111 a~~~~~~~~-~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------- 168 (488)
|+++|+++. .. +.+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+..+
T Consensus 169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 247 (597)
T 2xpi_A 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLT 247 (597)
T ss_dssp HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSC
T ss_pred HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhccc
Confidence 999998532 11 223458899999999999999999999999999874 2234443333
Q ss_pred -------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011323 169 -------------------------------IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (488)
Q Consensus 169 -------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 217 (488)
+..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHH
Confidence 44566788999999999999866 589999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
++|+++.... +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++..|.+.|++++|.++|+++.+
T Consensus 326 ~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 326 AITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999998752 3366789999999999999999999999998765 66889999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011323 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (488)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 377 (488)
.... +..++..++..|.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|
T Consensus 402 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 478 (597)
T 2xpi_A 402 MDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLL 478 (597)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 6443 78899999999999999999999999999875 4578899999999999999999999999998765 5678999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011323 378 NALITALCDGDQLPKTMEVLSDMKSL----GLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (488)
Q Consensus 378 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 451 (488)
+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+.
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 99999999999999999999999765 66787 7899999999999999999999999999865 33778888888
Q ss_pred HHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 452 GMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 452 ~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
.++.+ ++++|.+.++++...+|.++.
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 88876 899999999999988877654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-35 Score=291.58 Aligned_cols=397 Identities=10% Similarity=0.006 Sum_probs=347.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC------------------
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP------------------ 90 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------ 90 (488)
......+.+.|++++|+++|+.+... +.+......++..+.+.|++++|+++|++..+.
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIK 197 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccc
Confidence 34455666899999999999988654 456677888899999999999999999965443
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH------------------------------------
Q 011323 91 -TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL------------------------------------ 133 (488)
Q Consensus 91 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------ 133 (488)
+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 47899999999999999999999999999875 3344443333
Q ss_pred --HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011323 134 --ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (488)
Q Consensus 134 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 211 (488)
+..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++...+ +.+..++..++.++.+.|
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG 353 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC
Confidence 44566788999999999998866 5899999999999999999999999999999775 457889999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011323 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (488)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 291 (488)
++++|.++++++... .+.+..++..++..|.+.|++++|.++|+.+.+.. +.+..+++.++..|.+.|++++|.++
T Consensus 354 ~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 354 EKNKLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp CHHHHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999864 23456789999999999999999999999998865 56788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 011323 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI--- 368 (488)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 368 (488)
|+++.+.+.. +..++..++.+|.+.|++++|.++|+++.+.. +.++.+|+.++..|.+.|++++|.++|+++.+.
T Consensus 430 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 430 YTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9999987553 78899999999999999999999999999875 457899999999999999999999999999765
Q ss_pred -CCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 011323 369 -KLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 369 -~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
+..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.++++++.+..
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 55677 7899999999999999999999999998764 5578999999999999999999999999999853
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.2e-29 Score=233.81 Aligned_cols=378 Identities=12% Similarity=0.043 Sum_probs=285.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCCh
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 108 (488)
...+.+.|++++|++.++++.+.. |.+......+..++...|++++|..+++... +.+..+|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 456678999999999999988876 7777777778888888888888888887653 45677888888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
++|++.|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888887764 4456678888888888888888888888887763 334566777778888888888888888888
Q ss_pred HhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 011323 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 268 (488)
.... +.+..+|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++...... +.+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 7663 3456778888888888888888888888877642 1234466777777788888888888888777765 456
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 011323 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (488)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (488)
..++..+...+.+.|++++|...++++.+..+. +..++..+...+.+.|++++|...++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 777777888888888888888888887776443 56677777778888888888888888777764 4567777777788
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKD 423 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 423 (488)
+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+. .| +...|..+...+...|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 888888888888888777654 445677777777888888888888888877763 34 3556666665555444
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.6e-31 Score=248.74 Aligned_cols=205 Identities=16% Similarity=0.243 Sum_probs=163.2
Q ss_pred HHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 011323 252 RAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VE 321 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 321 (488)
.+..+.+.+.+.+...++. .++.+|++|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3444555666665555443 5777888888888888888888888888888888888888888876554 67
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
.|.++|++|...|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888999988888889999999999999999999999999999888888999999999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 011323 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (488)
Q Consensus 402 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 456 (488)
+.|+.||..||+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999888888999999888887653
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.6e-28 Score=223.82 Aligned_cols=360 Identities=13% Similarity=0.064 Sum_probs=315.0
Q ss_pred HHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 011323 68 FNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (488)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (488)
+..+...|++++|++.++.+. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 445566799999999998763 4566778888889999999999999999988764 678899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
+|.+.|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999998873 3456789999999999999999999999998774 3345667778889999999999999999998
Q ss_pred hCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 011323 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (488)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 304 (488)
... +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++.....+. +.
T Consensus 163 ~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 163 ETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 742 2235678889999999999999999999999876 567889999999999999999999999998886543 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (488)
Q Consensus 305 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (488)
.++..+..++...|++++|...++++.+.+ +.++.++..+..++.+.|++++|...++++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 889999999999999999999999999875 4467889999999999999999999999998765 67889999999999
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|...++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999875 2456889999999999999999999999999874
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.5e-30 Score=245.30 Aligned_cols=187 Identities=18% Similarity=0.281 Sum_probs=155.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHhCCCCCCHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---------WEFACSVYDDMTKKGVIPDEVF 306 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 306 (488)
.++.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.+. ++.|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566677777777777777777777777777777777777777766543 5778888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (488)
.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888877653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.9e-23 Score=197.92 Aligned_cols=300 Identities=12% Similarity=0.040 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|.+.|+++.+.+ +.+..++..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 344444444444444444444444444332 2334444444444444455555554444444432 22344444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHH------------HHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDR---VVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (488)
...|++++|...|+++.... +.+. ..+..+ ...+...|++++|...|+++.... +.+...+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~ 180 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWDAELR 180 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHH
Confidence 44455555555544444432 1112 222222 222444555555555555544321 1223344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH-------
Q 011323 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL------- 310 (488)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------- 310 (488)
..+..++...|++++|...|+.+.+.. +.+..++..+...|...|++++|...++++...... +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHH
Confidence 444555555555555555555544432 334445555555555555555555555555443221 22222222
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 311 -----IDFAGHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (488)
Q Consensus 311 -----~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 381 (488)
...+.+.|++++|...|+.+.+.... + ...+..+..++.+.|++++|...++++.+.. +.+...|..+.
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 336 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44555555555555555555543211 1 2344555555555555555555555554432 23445555555
Q ss_pred HHHHcCCChhHHHHHHHHHHh
Q 011323 382 TALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~ 402 (488)
.+|...|++++|...++++.+
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555555555554
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.4e-24 Score=204.73 Aligned_cols=404 Identities=10% Similarity=0.017 Sum_probs=316.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHh
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 104 (488)
.....+.+.+.|++++|++.|+++.+.+ | +...+..++..+...|++++|++.|+++. +.+..+|..+..++..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3445566779999999999999999987 4 56777888899999999999999998764 5677899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----------------------------
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---------------------------- 156 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------- 156 (488)
.|++++|+..|+.+...+ +++......++..+........+.+.+..+...
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999876 445555555555444433333332222111100
Q ss_pred -------CC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHhHHHHHH
Q 011323 157 -------GI---------EPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRS-----KNV--------KPDRVVFNALI 204 (488)
Q Consensus 157 -------~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll 204 (488)
.. +.+...+......+.. .|++++|...|+++.. ..- +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 00 1114444444454554 8999999999999987 311 22356778888
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
..+...|++++|...++++... .|+...+..+..++...|++++|...++.+.... +.+..++..+...+...|+
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 8999999999999999998875 2336678888899999999999999999998875 5567889999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 364 (488)
+++|...+++..+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999887554 66788889999999999999999999998864 44677889999999999999999999999
Q ss_pred HHhCCCC-CC----HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 365 MKSIKLK-PT----VSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 365 ~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
+.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8754211 11 3388889999999 999999999999998753 4467888999999999999999999999999
Q ss_pred HcCCCCcHH
Q 011323 437 EDGVIPNLV 445 (488)
Q Consensus 437 ~~~~~~~~~ 445 (488)
+.. |+..
T Consensus 477 ~~~--~~~~ 483 (514)
T 2gw1_A 477 DLA--RTME 483 (514)
T ss_dssp HHC--SSHH
T ss_pred Hhc--cccH
Confidence 854 5544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6.3e-23 Score=194.31 Aligned_cols=328 Identities=12% Similarity=0.034 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011323 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119 (488)
Q Consensus 43 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (488)
.+...+.++...+ |.+...+..++..+...|++++|+..|+++. +.+..+|..+...+...|++++|+..|+.+.
T Consensus 10 ~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555555555 7788888888888899999999999998764 4678889999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHH------------HHhcCCHHHHHHH
Q 011323 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV---HTYGALIDG------------CAKAGQVAKAFGA 184 (488)
Q Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~~~~~~a~~~ 184 (488)
+.+ +.+..++..+..++...|++++|.+.|+.+.+.. +.+. ..+..+... +...|++++|...
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 875 5578889999999999999999999999998763 2234 667766444 8889999999999
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011323 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 264 (488)
|+++.... +.+..++..+..++...|++++|.+.|+++.... +.+..++..+..++...|++++|...|+.+....
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99998764 5578888999999999999999999999987642 3345688889999999999999999999988765
Q ss_pred CCCCHHHHHHH------------HHHHHccCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 265 IKGTPEVYTIA------------INCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVEAAFEILQ 328 (488)
Q Consensus 265 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 328 (488)
+.+...+..+ ...+.+.|++++|...|+++.+.... + ...+..+..++.+.|++++|...++
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4456666555 78889999999999999998885432 2 3477888889999999999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (488)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 382 (488)
.+.+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 371 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEK 371 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHH
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 988764 4468899999999999999999999999998764 334555555443
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.9e-23 Score=200.12 Aligned_cols=409 Identities=11% Similarity=-0.003 Sum_probs=316.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011323 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (488)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (488)
...+...+..+...|++++|+..|+++. .|+..+|..+..++...|++++|++.++.+.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4456667788888899999999998875 4788899999999999999999999999998875 567788999999999
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------------
Q 011323 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK--------------------------- 191 (488)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------- 191 (488)
..|++++|.+.|+.+.+.+ +++......++..+........+.+.+..+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999998875 344444445554444433333332222111100
Q ss_pred --------CC---------CCCHhHHHHHHHHHHc---cCCHHHHHHHHHHHhh-----C--CCCC----CCCcchHHHH
Q 011323 192 --------NV---------KPDRVVFNALITACGQ---SGAVDRAFDVLAEMNA-----E--VHPV----DPDHITIGAL 240 (488)
Q Consensus 192 --------~~---------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~--~~~~----~~~~~~~~~l 240 (488)
.. +.+...+......+.. .|++++|...++++.. . .+.. +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 00 1113344444444444 8999999999999876 2 1110 1224567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 320 (488)
...+...|++++|...++.+.+.... ...+..+...+...|++++|...++++.+.... +...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCH
Confidence 88999999999999999999887633 888999999999999999999999999887544 677889999999999999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 400 (488)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999875 4467789999999999999999999999998764 446788899999999999999999999998
Q ss_pred HhCCC-CCC----HHHHHHHHHHHhh---cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhh
Q 011323 401 KSLGL-CPN----TITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLS 470 (488)
Q Consensus 401 ~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~ 470 (488)
.+... .++ ...+..+...+.. .|++++|...++++.+... .+...+..+..++.+ ++++|...++.+..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 76321 111 3388899999999 9999999999999988642 245566666666665 89999999999998
Q ss_pred ccCCCCc
Q 011323 471 FNSGRPQ 477 (488)
Q Consensus 471 ~~~~~~~ 477 (488)
+.|.++.
T Consensus 478 ~~~~~~~ 484 (514)
T 2gw1_A 478 LARTMEE 484 (514)
T ss_dssp HCSSHHH
T ss_pred hccccHH
Confidence 8776554
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.7e-22 Score=195.95 Aligned_cols=395 Identities=12% Similarity=0.052 Sum_probs=302.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhc
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 105 (488)
......+.+.|++++|++.|+++.+.+ |.+...+..++..+...|++++|++.|+++. +.+..++..+..++...
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 344556669999999999999999987 7888889999999999999999999998864 56788999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CCCCCHHH---------------
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEPNVHT--------------- 164 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~--------------- 164 (488)
|++++|+..|+.+ .. .|+.. ...+..+...+...+|.+.++.+... ...|+...
T Consensus 107 g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999633 22 22221 22234455555667788888777542 11222222
Q ss_pred ---------------HHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCH-------hHHHHHHHHHHccCCHH
Q 011323 165 ---------------YGALIDGCA--------KAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVD 214 (488)
Q Consensus 165 ---------------~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~ 214 (488)
...+...+. ..|++++|..+|+++.+.. +.+. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 122222211 1247899999999998763 2222 34666777888899999
Q ss_pred HHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011323 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (488)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 294 (488)
+|...+++.... .|+...+..+...+...|++++|...++.+.+.. +.++.++..+...+...|++++|...+++
T Consensus 261 ~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 261 DAQVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999874 4556678888889999999999999999998876 56788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----
Q 011323 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK----- 369 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 369 (488)
..+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 9886544 56788889999999999999999999998875 4567788999999999999999999999987532
Q ss_pred CCCCHHHHHHHHHHHHcC----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 011323 370 LKPTVSTMNALITALCDG----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
.......+......+... |++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 111222344455667777 99999999999998752 4567889999999999999999999999999864
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=7.8e-21 Score=184.18 Aligned_cols=401 Identities=11% Similarity=0.032 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (488)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (488)
...+...+..+...|++++|++.|+++. +.+..+|..+..++...|++++|++.++.+.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4556677788888899999999998764 4678889999999999999999999999998875 56788899999999
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHhH------------
Q 011323 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVV------------ 199 (488)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~------------ 199 (488)
...|++++|.+.|+. ... .|+. ....+..+...+....|...++.+... ...|+...
T Consensus 104 ~~~g~~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999963 322 2222 222344555566667788888877543 11122221
Q ss_pred ------------------HHHHHHHHHc--------cCCHHHHHHHHHHHhhCCCCCCCC--------cchHHHHHHHHH
Q 011323 200 ------------------FNALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPD--------HITIGALMKACA 245 (488)
Q Consensus 200 ------------------~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~ 245 (488)
...+...+.. .|++++|..+++++... .|+ ..++..+...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHHH
Confidence 1222222222 24788999999998864 333 224666677888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011323 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (488)
Q Consensus 246 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 325 (488)
..|++++|...++.+.... |+...+..+...+...|++++|...+++..+.... +..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999998875 44888999999999999999999999999887544 78889999999999999999999
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-
Q 011323 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG- 404 (488)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 404 (488)
.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 999999875 3456789999999999999999999999998765 4567789999999999999999999999987532
Q ss_pred ----CCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHh
Q 011323 405 ----LCPNTITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468 (488)
Q Consensus 405 ----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~ 468 (488)
.......+......+... |++++|...++++.+... .+...+..+...+.+ ++++|...++.+
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111122344555677777 999999999999988642 244566667677665 899999999999
Q ss_pred hhccCCCCc
Q 011323 469 LSFNSGRPQ 477 (488)
Q Consensus 469 ~~~~~~~~~ 477 (488)
..+.|..+.
T Consensus 489 l~~~~~~~~ 497 (537)
T 3fp2_A 489 AILARTMDE 497 (537)
T ss_dssp HHHC--CHH
T ss_pred HHhCCCcHH
Confidence 988876654
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=5.5e-20 Score=168.35 Aligned_cols=314 Identities=10% Similarity=0.048 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
++..+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777778888888888888888887764 4567788888888888888888888888887763 336677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (488)
.+...|++++|...|++..+. .| +...+..+..... + ..+..+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------~------------------~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-------M------------------QRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------H------------------HHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-------H------------------HHHHHHHHHHHH
Confidence 888888888888888888765 34 3333333321100 0 011223344555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
.|++++|...++.+.+.. +.++..+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666555543 345555666666666666666666666666554332 455566666666666666666666
Q ss_pred HHHHHHCCCCccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCh
Q 011323 327 LQEAKNQGISVGIISYS------------SLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQL 390 (488)
Q Consensus 327 ~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 390 (488)
++...+.. +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+...+...|++
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCH
Confidence 66655543 22222222 23556777788888888887776643 2222 2244566777778888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
++|...+++..+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888888777642 335677777788888888888888888877763
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=8.9e-20 Score=166.98 Aligned_cols=318 Identities=12% Similarity=0.036 Sum_probs=242.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011323 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (488)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 205 (488)
++..+..+...+...|++++|.+.|+.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777788888888888888888887763 3457778888888888888888888888887663 335677777888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCC---C-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011323 206 ACGQSGAVDRAFDVLAEMNAEVHPVDP---D-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (488)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (488)
++...|++++|...+++.... .| + ...+..+..... ...+..+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 888888888888888887653 33 1 111211111100 1123445678899
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (488)
Q Consensus 282 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 361 (488)
.|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887554 78889999999999999999999999999875 55788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHH------------HHHHHHcCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCH
Q 011323 362 YEHMKSIKLKPTVSTMNA------------LITALCDGDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDV 425 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~ 425 (488)
+++..+.. +.+...+.. +...+.+.|++++|...++++.+.. +.+. ..+..+...+...|++
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCH
Confidence 99998764 344444432 3667899999999999999998742 2233 2355678899999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
++|...++++.+.. +.+...+..+...+.+ ++++|....+.+...+|.++.
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 99999999998853 2255566666666665 899999999999988776544
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=2.6e-17 Score=157.14 Aligned_cols=365 Identities=11% Similarity=0.006 Sum_probs=289.6
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHhh----hHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHh----cCChhHHHHH
Q 011323 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (488)
Q Consensus 44 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~ 114 (488)
++..+....+.+ +......+...+.. .+++++|+..|++.. ..+...+..+...|.. .+++++|.+.
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 355555555544 33444555666655 678899999988764 4567788888888888 8899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 011323 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYG 186 (488)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 186 (488)
|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99988765 56777778888887 789999999999988765 66778888888887 789999999999
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHH
Q 011323 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYK 258 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 258 (488)
+..+.| +...+..+...|.. .++.++|.+.|++.... .+...+..+...|.. .+++++|..+|+
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 988775 67778888888877 78999999999988764 234566777777775 789999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 011323 259 MIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQE 329 (488)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~ 329 (488)
...+.+ ++..+..+...|.. .+++++|...|++..+.| +...+..+...|... +++++|...+++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 888754 45677777777777 889999999999988764 556677777788777 899999999999
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHh
Q 011323 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKS 402 (488)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 402 (488)
..+.+ +...+..+...|...| +.++|.+.|++..+. .+...+..+...|.. .+++++|...+++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 98875 4567777888887766 788999999998875 367788888888888 8899999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHcCCC
Q 011323 403 LGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGVI 441 (488)
Q Consensus 403 ~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 441 (488)
.| +...+..+...|.. .+++++|..+|+++.+.+..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 56777788888887 89999999999999987644
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.1e-19 Score=162.47 Aligned_cols=285 Identities=12% Similarity=0.022 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011323 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (488)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 205 (488)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33344444444444455555555555544432 2233334444444445555555555555544432 223444444444
Q ss_pred HHHccC-CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 206 ACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 206 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
.+...| ++++|.+.|++..... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 455555 4555555555544321 1122344444455555555555555555554443 2233444445555555555
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCccHHHHHHHHHHHHhcCCHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNWQ 356 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 356 (488)
+++|...+++..+.... +...+..+...+...|++++|...++++.+.. .+....++..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 55555555555544322 44445555555555555555555555544321 0222345555555556666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
+|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+..++
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 6666665555443 2344555555556666666666666666555431 22344445554444
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=5.7e-19 Score=159.66 Aligned_cols=292 Identities=14% Similarity=0.070 Sum_probs=239.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011323 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (488)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 169 (488)
.+...+..+...+...|++++|+++++.+.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455667778888888899999999999988765 5566677778888899999999999999988764 44677888889
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC
Q 011323 170 DGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (488)
Q Consensus 170 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (488)
..+...| ++++|...|++..... +.+...+..+...+...|++++|.+.+++..... +.+...+..+...+...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHh
Confidence 9999999 8999999999988764 4457788889999999999999999999987742 223456777888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCH
Q 011323 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------VIPDEVFLSALIDFAGHAGKV 320 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 320 (488)
++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. ...+..++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998875 5678889999999999999999999999887632 123457888999999999999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCCh
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQL 390 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 390 (488)
++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 99999999998865 4467888999999999999999999999988765 45677888888777 455554
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=6.7e-17 Score=154.31 Aligned_cols=351 Identities=13% Similarity=0.045 Sum_probs=291.9
Q ss_pred CCchhHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh----hHHHHHHHHHhhhCC-CCCHHH
Q 011323 24 DVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLST 94 (488)
Q Consensus 24 ~~~~~~~~~~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~ 94 (488)
+.......-..+.. .+++++|++.|+...+.+ +......++.++.. .++.++|++.|++.. ..+...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34444444455555 799999999999999875 34455567777777 789999999998875 457778
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 011323 95 FNMLMSVCAS----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (488)
Q Consensus 95 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (488)
+..+...|.. .+++++|+..|+...+.| +...+..+...|.. .++.++|.+.|++..+.| +...+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888888 889999999999998865 56788888888887 789999999999998864 678888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchHH
Q 011323 167 ALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (488)
Q Consensus 167 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (488)
.+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|++.... .+...+.
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~ 259 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-----GNSIAQF 259 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-----TCHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHH
Confidence 89999988 899999999999998875 56777788888876 78999999999998764 2344666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 239 ALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSA 309 (488)
Q Consensus 239 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (488)
.+...+.. .+++++|..+|+...+.+ ++..+..+...|... +++++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77777777 899999999999998764 567788888888887 89999999999998875 4567777
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 310 LIDFAGHAG---KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (488)
Q Consensus 310 l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 382 (488)
+...|...| ++++|.+.|++..+.+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887766 7899999999999875 67888899999988 899999999999998865 5778888888
Q ss_pred HHHc----CCChhHHHHHHHHHHhCC
Q 011323 383 ALCD----GDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 383 ~~~~----~~~~~~a~~~~~~~~~~~ 404 (488)
.|.. .+++++|...|++..+.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8887 899999999999998865
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.7e-17 Score=160.02 Aligned_cols=408 Identities=11% Similarity=0.074 Sum_probs=247.7
Q ss_pred ccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHH
Q 011323 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (488)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (488)
.|.+.......+. +.+.|++++|..+|+++++.. |.+..+...++....+.|++++|..+|+++. .|+...|...
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~ 85 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCY 85 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3444444444444 356899999999999999875 7788888888888888899999999999876 3677777777
Q ss_pred HHHH-HhcCChhHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHHHH---------cCCHhHHHHHHHHHHHcCCCCCH
Q 011323 99 MSVC-ASSKDSEGAFQ----VLRLVQEA-GLK-ADCKLYTTLITTCAK---------SGKVDAMFEVFHEMVNAGIEPNV 162 (488)
Q Consensus 99 ~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~ 162 (488)
+... ...|+.+.|.+ +|+..... |.. ++...|...+..... .|++++|.++|++.++....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7543 45677777665 66665543 433 356677777776654 68889999999998873111112
Q ss_pred HHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------hCC---CCCC--------HhHHHHHHHHHHcc--
Q 011323 163 HTYGALIDGC-------------AKAGQVAKAFGAYGIMR------SKN---VKPD--------RVVFNALITACGQS-- 210 (488)
Q Consensus 163 ~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~ll~~~~~~-- 210 (488)
..|....... ...+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3443322211 12334556666555421 111 2333 13344433322211
Q ss_pred --CCH----HHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCCCHH
Q 011323 211 --GAV----DRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-------AGQVD-------RAREVYKMIHKYNIKGTPE 270 (488)
Q Consensus 211 --g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~ 270 (488)
++. ..+..+|++..... +.+...|...+..+.+ .|+++ +|..+++...+.-.+.+..
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 222 35566666665531 1233455555555554 56665 6777777776522244566
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH-
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA- 348 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 348 (488)
.+..++..+.+.|++++|..+|+++.+.... + ...|...+..+.+.|++++|..+|++..+.. +.+...+......
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 7777777777777777777777777764322 2 2466666666667777777777777776643 2222222222212
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCCH
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN--TITYSILLVACERKDDV 425 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~ 425 (488)
+...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 234677777777777766543 3356667777777777777777777777776542 1222 33566666666667777
Q ss_pred HHHHHHHHHHHH
Q 011323 426 EVGLMLLSQAKE 437 (488)
Q Consensus 426 ~~a~~~~~~~~~ 437 (488)
+.+..+.+++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776665
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=1.8e-17 Score=159.84 Aligned_cols=421 Identities=10% Similarity=0.064 Sum_probs=300.8
Q ss_pred HHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 011323 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (488)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 124 (488)
|++.++.+ |.+...+..++.. ...|++++|+.+|+++. +.+...|...+..+.+.|++++|..+|+++.+. .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55666665 6677666666665 56789999999999875 457788999999999999999999999999876 3
Q ss_pred CCHHHHHHHHHHH-HHcCCHhHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 011323 125 ADCKLYTTLITTC-AKSGKVDAMFE----VFHEMVNA-GIEP-NVHTYGALIDGCAK---------AGQVAKAFGAYGIM 188 (488)
Q Consensus 125 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 188 (488)
|+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6877887777533 45677777665 77766543 5443 56788888877655 78999999999999
Q ss_pred HhCCCCCCHhHHHHHHHHH-------------HccCCHHHHHHHHHHH------hhCC-CCCCCCc--------chHHHH
Q 011323 189 RSKNVKPDRVVFNALITAC-------------GQSGAVDRAFDVLAEM------NAEV-HPVDPDH--------ITIGAL 240 (488)
Q Consensus 189 ~~~~~~~~~~~~~~ll~~~-------------~~~g~~~~a~~~~~~~------~~~~-~~~~~~~--------~~~~~l 240 (488)
......+....|....... ...+++..|..++... .... ..++|+. ..|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8742111123443322211 1345567777776652 2111 1123331 234444
Q ss_pred HHHHHhc----CCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-------cCChH-------HHHHHHHHHHhC
Q 011323 241 MKACANA----GQV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKK 298 (488)
Q Consensus 241 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 298 (488)
+...... ++. +.+..+|+...... +.++..|..++..+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 3322221 232 47778898888764 6678899888888875 79987 899999998863
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011323 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (488)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 377 (488)
-.+-+...+..++..+.+.|++++|..+|+++.+.. +.+ ...|..++..+.+.|++++|..+|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 222368889999999999999999999999999864 223 3588888998999999999999999998753 2233333
Q ss_pred HHHHHH-HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCCc--HHHHHHHHHH
Q 011323 378 NALITA-LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIGM 453 (488)
Q Consensus 378 ~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~ 453 (488)
...... +...|+.++|..+|++..+. .+.+...|..++..+.+.|+.++|..+|+++...+ ..|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 332222 34689999999999998874 24468899999999999999999999999999873 3443 4467776765
Q ss_pred Hhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 454 CSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 454 ~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
... +.+.+..+.+++....|.+++
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p~~~~ 498 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFREEYE 498 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHCchhcc
Confidence 543 789999999988888775443
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=5.5e-19 Score=162.44 Aligned_cols=231 Identities=13% Similarity=0.064 Sum_probs=106.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 209 (488)
+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++.... +.+..++..+..++..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 2233444444444444444444444444444332 2234444444444444
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCcc--------------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHH
Q 011323 210 SGAVDRAFDVLAEMNAEVHPVDPDHI--------------TIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTI 274 (488)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 274 (488)
.|++++|...++++....+. .+... .+..+. .+...|++++|...++.+.+..... +..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 44444444444444432100 00000 000111 1225556666666666555543111 3555555
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (488)
+...+...|++++|...+++..+.... +..++..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 555566666666666666555544222 34455555555555555555555555555432 2334455555555555555
Q ss_pred HHHHHHHHHHHH
Q 011323 355 WQKALELYEHMK 366 (488)
Q Consensus 355 ~~~a~~~~~~~~ 366 (488)
+++|...|+++.
T Consensus 301 ~~~A~~~~~~al 312 (368)
T 1fch_A 301 HREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1e-18 Score=160.63 Aligned_cols=308 Identities=10% Similarity=-0.082 Sum_probs=223.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHH-HhhhCC---CC----CHHHHHHHHHHHHhcCChh
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVP---NP----TLSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~---~~----~~~~~~~l~~~~~~~~~~~ 109 (488)
.+.++.+...++.+.+.+ +. .+...|++++|++ .|++.. +. +...+..+...+...|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRD--AE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHcCC--ch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 344455555666665544 11 1122377888888 777553 11 3456788889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
+|+..++.+.+.. +.+..++..+..++...|++++|.+.|++..+.. +.+..++..+...+...|++++|...++++.
T Consensus 82 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 82 NAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999875 5678899999999999999999999999998875 4578899999999999999999999999998
Q ss_pred hCCCCCCHhHHHH---------------HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 011323 190 SKNVKPDRVVFNA---------------LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 190 ~~~~~~~~~~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 254 (488)
... +.+...+.. .+..+...|++++|...++++....+. .++..++..+...+...|++++|.
T Consensus 160 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 160 RYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 764 222333221 233444889999999999999875211 114567888999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
..++.+.... +.+..++..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|...++++.+..
T Consensus 238 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 238 DCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998875 567889999999999999999999999999886543 67889999999999999999999999987643
Q ss_pred CCc----------cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 335 ISV----------GIISYSSLMGACSNAKNWQKALELYE 363 (488)
Q Consensus 335 ~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~ 363 (488)
... ...+|..+..+|...|++++|..+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 111 15677777777777777777776665
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.5e-17 Score=146.58 Aligned_cols=258 Identities=12% Similarity=0.151 Sum_probs=192.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchH-HHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCC
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (488)
+..+...+..|++..|++.++...... |.+. .....+...+...|++++|+..++...+++..++..+...+...++
T Consensus 3 l~~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 3 LFDVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTT
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCc
Confidence 456777888999999999888765443 4442 3556677888888999999988877666677788888888888899
Q ss_pred hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
.++|++.++.+...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999888765434 566677777888899999999988877 4577888888888889999999999998
Q ss_pred HHHhCCCCCCHhHH---HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011323 187 IMRSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (488)
Q Consensus 187 ~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 263 (488)
++.+.. |+.... ...+..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...++++...
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888763 443211 12233344557888888888888764 2334556777777888888888888888887776
Q ss_pred CCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHhCCC
Q 011323 264 NIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKGV 300 (488)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~ 300 (488)
. +.++.++..++..+...|+.++ +.++++++.+..+
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 5 5677778778878888887765 5677777776543
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=5.3e-18 Score=155.67 Aligned_cols=234 Identities=12% Similarity=-0.029 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...+..+...+.+.|++++|++.|+.+.+.. +.+..++..+..++...|++++|.+.|++..+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44567788888888899999999998888765 5577888888888888999999999998888764 345778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HhHH----------HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHH
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPD-RVVF----------NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~----------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 239 (488)
.|...|++++|...|+++.+.. |+ ...+ ..+...+...|++++|...++++....+ ...+..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG-DMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSC-SSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-CccCHHHHHH
Confidence 8888888888888888887652 22 1112 2234455555555566555555554311 0112334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...+++..+..+. +..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 5555555555555555555555443 334445555555555555555555555555443222 34444445555555555
Q ss_pred HHHHHHHHHHHH
Q 011323 320 VEAAFEILQEAK 331 (488)
Q Consensus 320 ~~~a~~~~~~~~ 331 (488)
+++|...++++.
T Consensus 297 ~~~A~~~~~~al 308 (365)
T 4eqf_A 297 YREAVSNFLTAL 308 (365)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=4e-18 Score=156.52 Aligned_cols=274 Identities=12% Similarity=0.021 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011323 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (488)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 207 (488)
..+..+...+.+.|++++|.+.|+.+.+.. +.+..+|..+...|...|++++|+..|+++.... +.+..++..+..++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666666666666666666665543 3345566666666666666666666666665542 23455555566666
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChH
Q 011323 208 GQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (488)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (488)
...|++++|...++++... .|+. ..+..+. .....+..+...+...|+++
T Consensus 144 ~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ----NPKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH----CHHHHCC--------------------------------------------CCHHHH
T ss_pred HccccHHHHHHHHHHHHHh----CccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHH
Confidence 6666666666666555442 1210 0110000 11233444566677777777
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 287 FACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 287 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
+|...++++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777665332 156677777777777778888877777777654 445677777888888888888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC---CC--------CCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 011323 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG---LC--------PNTITYSILLVACERKDDVEVGLMLLSQ 434 (488)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 434 (488)
.+.. +.+..++..+..+|...|++++|...++++.+.. .. .+...|..+..++...|+.+.+.++.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7654 3457777777788888888888888888776421 00 1256777888888888888877776654
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.5e-18 Score=154.58 Aligned_cols=293 Identities=15% Similarity=0.132 Sum_probs=131.4
Q ss_pred hHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcC
Q 011323 28 QLHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 28 ~~~~~~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (488)
+...++.|+ +.|++++|.+.++++.. | .....++..+...|++++|++.|.+. +|...|..++..+...|
T Consensus 5 ~~~a~~~ll~~~~~ld~A~~fae~~~~----~---~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 5 NTSAVQVLIEHIGNLDRAYEFAERCNE----P---AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHccCHHHHHHHHHhCCC----h---HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCC
Confidence 344566677 67889999999998832 1 25567888999999999999999775 57779999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999977766653 4557888899999999999999988884 4677899999999999999999999999
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011323 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 266 (488)
.+ ..|..++.++.+.|++++|.+.+..+. +..+|..++.+|...|+++.|...... +.
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~ 204 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLH-----IV 204 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TT
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HH
Confidence 76 478899999999999999999999872 456899999999999999999554443 33
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCc------cH
Q 011323 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-QGISV------GI 339 (488)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~------~~ 339 (488)
..+.-...++..|.+.|.+++|..+++...... +-....|+-+.-.|++- +++...+.++.... .+++| +.
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 455556678899999999999999999988665 33566777776666654 34444444433332 22222 35
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELY 362 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~ 362 (488)
..|..++..|.+.++++.|..+.
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHH
Confidence 56888888999999999887654
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=3.7e-17 Score=147.44 Aligned_cols=227 Identities=11% Similarity=0.007 Sum_probs=97.2
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011323 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (488)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 211 (488)
.+...+...|++++|.++|+++.+.. +.+..++..+...+...|++++|...++++.... +.+..++..+...+...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 33344444444444444444444332 2233344444444444444444444444444332 223344444444444444
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCcchHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011323 212 AVDRAFDVLAEMNAEVHPVDPDHITIGAL--------------MK-ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (488)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 276 (488)
++++|.+.++++....+ .+...+..+ .. .+...|++++|...++.+.+.. +.+...+..+.
T Consensus 104 ~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 104 NANAALASLRAWLLSQP---QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp CHHHHHHHHHHHHHTST---TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC---ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 44444444444443210 011111111 11 1344455555555555555443 33444555555
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 011323 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (488)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (488)
..+...|++++|...++++.+.... +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 5555555555555555554443221 33444444444444444444444444444432 223344444444444444444
Q ss_pred HHHHHHHHHH
Q 011323 357 KALELYEHMK 366 (488)
Q Consensus 357 ~a~~~~~~~~ 366 (488)
+|...++++.
T Consensus 258 ~A~~~~~~a~ 267 (327)
T 3cv0_A 258 LAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=6.2e-17 Score=146.01 Aligned_cols=267 Identities=8% Similarity=-0.094 Sum_probs=215.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...+..+...+...|++++|+.+++.+.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33456677778888999999999999888764 5577888888999999999999999999988764 446788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH--------------HH-HHHccCCHHHHHHHHHHHhhCCCCCCCCcc
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL--------------IT-ACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 235 (488)
.+...|++++|.+.++++.... +.+...+..+ .. .+...|++++|...++++.... +.+..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~ 173 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQ 173 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---TTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHH
Confidence 9999999999999999988763 2233333333 22 3777899999999999988742 23556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (488)
.+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+.... +...+..+...+.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 78888999999999999999999998875 567889999999999999999999999998886543 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCc-----------cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGISV-----------GIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
..|++++|...++++.+..... +...+..+..++...|++++|..++++.
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999988754221 4778888888999999999988887644
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.3e-18 Score=154.87 Aligned_cols=283 Identities=13% Similarity=0.153 Sum_probs=137.0
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011323 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (488)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (488)
...|++++|.++++++..| .+|..+..++.+.|++++|++.|.+ .+|..+|..++..+...|++++|.+.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3567799999999999655 5999999999999999999999965 3577799999999999999999999888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 011323 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (488)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 231 (488)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 77764 5567889999999999999999988884 367789999999999999999999999976
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (488)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 311 (488)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 27899999999999999999999988 26789999999999999999996655442 22444466789
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 383 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~ 383 (488)
..|.+.|++++|..+++...... +-....|+-+..+|++- ++..+..+.|.. +.+++| +...|..++..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765 55677888887777764 345555555542 223333 45678999999
Q ss_pred HHcCCChhHHHHH
Q 011323 384 LCDGDQLPKTMEV 396 (488)
Q Consensus 384 ~~~~~~~~~a~~~ 396 (488)
|...++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999988764
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.2e-16 Score=150.25 Aligned_cols=213 Identities=10% Similarity=-0.032 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhCC------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC------
Q 011323 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP------------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG------ 122 (488)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 122 (488)
...+..++.++...|+.++|++.|++.. +....+|+.+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4455566677777777777777776431 1234567777777777777777777776654320
Q ss_pred -CCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 011323 123 -LKADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVAKAFGAYGIMRSKNVKPD 196 (488)
Q Consensus 123 -~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (488)
......++..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 011234555555455443 35677777777776653 2234444444433 234456666777776666543 334
Q ss_pred HhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 011323 197 RVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (488)
Q Consensus 197 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 272 (488)
..++..+...+.. .|++++|.+.+++..... +.+..++..+...+...|++++|...++.+.+.. +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 4445444444333 345667777777665531 2233456666677777777777777777776654 4455566
Q ss_pred HHHHHHH
Q 011323 273 TIAINCC 279 (488)
Q Consensus 273 ~~l~~~~ 279 (488)
..+..+|
T Consensus 285 ~~lg~~y 291 (472)
T 4g1t_A 285 CQIGCCY 291 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=3.1e-14 Score=143.10 Aligned_cols=376 Identities=14% Similarity=0.179 Sum_probs=270.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCC
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (488)
-.+...++..|.+.+|+++++.+...+- +..+......++....+. +..+..++.++....+ ...+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 3455667799999999999999984431 123444444444333332 3344444444433222 4447788889999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 187 (488)
+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.+.|.+
T Consensus 1065 yEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 999999999852 12223333332 7788999999988652 578899999999999999999999966
Q ss_pred HHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011323 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 267 (488)
. -|...|..++.++.+.|++++|.+.|...... .++......++.+|++.+++++..... + .+
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~----~~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 3 37788889999999999999999999887764 233333445888899999888644332 2 34
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 011323 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (488)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (488)
+...+..+...|...|++++|...|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5566777999999999999999999985 36899999999999999999999876 35688999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh--cCCH
Q 011323 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER--KDDV 425 (488)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~ 425 (488)
+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|+-+...+++ .++.
T Consensus 1259 acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHH
Confidence 999999999998876643 3566778899999999999999999998877532 2234456556666555 3445
Q ss_pred HHHHHHHHHHHHcCCCC------cHHHHHHHHHHHhh--cHHHHH
Q 011323 426 EVGLMLLSQAKEDGVIP------NLVMFKCIIGMCSR--RYEKAR 462 (488)
Q Consensus 426 ~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~--~~~~a~ 462 (488)
.++.++|..-. +++| +...|..++..|.+ ++++|.
T Consensus 1333 mEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1333 REHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 55555554222 2332 45567777777765 566665
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=2.8e-16 Score=138.42 Aligned_cols=246 Identities=12% Similarity=0.067 Sum_probs=117.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH--hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHH
Q 011323 174 KAGQVAKAFGAYGIMRSKNVKPDR--VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (488)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (488)
..|+++.|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~------~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS------SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT------SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc------CChhHHHHHHHHHHHcCCCcHH
Confidence 345555555554443322 2221 22233445555555555554433220 1233344444445555555555
Q ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 252 RAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (488)
Q Consensus 252 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 330 (488)
+|.+.++.+...+. +.++..+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555544332 22344444444555555555555555544 224445555555555555555555555555
Q ss_pred HHCCCCccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 011323 331 KNQGISVGII---SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (488)
Q Consensus 331 ~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 407 (488)
.+.. |+.. ....++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 5443 2211 01112222333455566666665555442 3455555555555666666666666666555431 22
Q ss_pred CHHHHHHHHHHHhhcCCHHH-HHHHHHHHHH
Q 011323 408 NTITYSILLVACERKDDVEV-GLMLLSQAKE 437 (488)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 437 (488)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555555543 3455555554
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=7.2e-18 Score=163.79 Aligned_cols=151 Identities=13% Similarity=0.210 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQ---EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (488)
-..+||++|++|++.|+.++|.++|+.|. ..|+.||..|||.||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999998876 458899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC------cchHHHH
Q 011323 168 LIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGAL 240 (488)
Q Consensus 168 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~~l 240 (488)
+|.++++.|+ .+.|.++|++|.+.|+.||..+|+.++....+. .+++.++++. +++.|+ ..+...|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~---P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVK---PTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGC---CCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhC---cccCCCCCCcccccchHHH
Confidence 9999999998 588999999999999999999999998665443 3334444442 233333 4555667
Q ss_pred HHHHHhcC
Q 011323 241 MKACANAG 248 (488)
Q Consensus 241 ~~~~~~~~ 248 (488)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 77777655
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-15 Score=145.34 Aligned_cols=376 Identities=10% Similarity=-0.054 Sum_probs=229.6
Q ss_pred HHhcCCHHHHHHHHHHHHHC-------CCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-----------CCCHHHHH
Q 011323 35 LIRQGRISECIDLLEDMERK-------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-----------NPTLSTFN 96 (488)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~ 96 (488)
+...|++++|++.|++..+. ...+.....+..++.++...|++++|...++++. .....++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 34799999999999987643 1124456677788899999999999999887642 12345666
Q ss_pred HHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 97 MLMSVCAS--SKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 97 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
.+..++.. .+++++|++.|++..+.. |.+...+..+..+ +...++.++|++.+++..+.. +.+..++..+...
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHH
Confidence 65555544 457999999999998864 4456666555554 445678889999999988764 3456666666655
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHh
Q 011323 172 CAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACAN 246 (488)
Q Consensus 172 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 246 (488)
+.. .+++++|.+.+++..... +.+..++..+...+...|++++|...+++.... .|+ ..++..+..+|..
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY----IPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh----CCChHHHHHHHHHHHHH
Confidence 554 467889999999988764 556788899999999999999999999998874 343 3445555544432
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
.+... .... .. .........+.++.|...+++..+.... +...+..+...+...|++++|...
T Consensus 294 ~~~~~---------~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~ 356 (472)
T 4g1t_A 294 KVFQV---------MNLR-EN------GMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYY 356 (472)
T ss_dssp HHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHh---------hhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHH
Confidence 21110 0000 00 0000111122356777777777665432 445567777888888888888888
Q ss_pred HHHHHHCCCCccHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 011323 327 LQEAKNQGISVGII--SYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (488)
Q Consensus 327 ~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 403 (488)
|++..+....+... .+..+.. .....|+.++|+..|++..+.. |+...... ....+.++++...+.
T Consensus 357 ~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSK 425 (472)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHh
Confidence 88887765333221 2222222 2346788888888888887653 43322221 123344555555543
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCCcHHH
Q 011323 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPNLVM 446 (488)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 446 (488)
. +.+..+|..+...+...|++++|++.|+++++.+ ..|+..+
T Consensus 426 ~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 426 N-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp C-C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 2 4567788888888888899999999998888763 3354443
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=7.4e-18 Score=163.71 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=96.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 011323 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKS---IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 412 (488)
.....+|+++|.+|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44456788888888888888888888877653 467788888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhcCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 011323 413 SILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (488)
Q Consensus 413 ~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 456 (488)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++....+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 888888888887 46778888888888888888888888766543
No 36
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=9.1e-14 Score=139.80 Aligned_cols=312 Identities=13% Similarity=0.134 Sum_probs=235.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHH
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 111 (488)
...++..|.+++|..+|+..... .. .+..+....+++++|.++++++. ++.+|..+..++...|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~----~~-----A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN----TS-----AVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH----HH-----HHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 45566899999999999986311 11 11122335678999999998874 467888999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (488)
++.|.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.++++..... ..
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 9998553 477888889999999999999999998877653 4444444588889999888854333 22
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 011323 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (488)
Q Consensus 192 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 271 (488)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 346677778889999999999999999885 27888999999999999999999877 34578
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (488)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|.-+...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 888888899999988888766542 2356667788999999999999999998877654 4455667666666665
Q ss_pred c--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHcCCChhHHH
Q 011323 352 A--KNWQKALELYEHMKSIKLKP------TVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 352 ~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
. ++..++.+.|..-. +++| +...|..++..|.+.|+++.|.
T Consensus 1327 y~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred CCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3 45556666665432 2222 5677889999999999999888
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.73 E-value=1.4e-15 Score=143.01 Aligned_cols=346 Identities=11% Similarity=0.024 Sum_probs=195.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHH---HHHHHHhhhCCCCCHHHHHHHHHHHH
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCA 103 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~ 103 (488)
|.......+.+.|++++|++.|++..+.+. .... ..++.++...|+. ++|++.|++..+.++..+..+...+.
T Consensus 5 p~~~la~~~~~~g~~~~A~~~~~~aa~~g~--~~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 5 PDQRLANEALKRGDTVTAQQNYQQLAELGY--SEAQ--VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLA 80 (452)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CTGG--GTCC----------------------------CHHHHHHHHH
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHCCC--HHHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 346677788899999999999999988762 2222 2344444556666 89999998887667777777777555
Q ss_pred hcC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011323 104 SSK-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (488)
Q Consensus 104 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (488)
..+ ++++|+..|+...+.|. + ..+..|...|...+..++ +.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 554 77889999988888663 2 266667777776655443 444444444433 345566666777766
Q ss_pred CCHH----HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC---CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc-
Q 011323 176 GQVA----KAFGAYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA- 247 (488)
Q Consensus 176 ~~~~----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 247 (488)
+.++ .+..+++.... .++..+..+...|...| +.++|++.|+.....+ .++...+..+...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGG
T ss_pred CCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCC
Confidence 6443 33333433332 23336667777777777 7777777777776642 23333334455555443
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 011323 248 ---GQVDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--- 318 (488)
Q Consensus 248 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 318 (488)
+++++|..+|+... . .++..+..+... + ...+++++|...|++..+.| +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 57777777777766 2 234555555555 3 45677777777777777665 4555556665555 44
Q ss_pred --CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CC
Q 011323 319 --KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GD 388 (488)
Q Consensus 319 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 388 (488)
++++|...|++.. .| ++.....+...|.. ..+.++|...|++..+.|. ......|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCC
Confidence 7777777777666 33 45566666666654 3367777777777666542 2334444444443 34
Q ss_pred ChhHHHHHHHHHHhCC
Q 011323 389 QLPKTMEVLSDMKSLG 404 (488)
Q Consensus 389 ~~~~a~~~~~~~~~~~ 404 (488)
+.++|...++...+.|
T Consensus 373 d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6666666666666654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9e-15 Score=126.85 Aligned_cols=117 Identities=11% Similarity=0.031 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|+..+
T Consensus 119 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33444444444443332 2223344444444444444444444444444332 223444444444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
++..+.. +.+...+..+...+...|++++|...++++.+
T Consensus 197 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444321 22244444444445555555555555444443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=2.7e-15 Score=126.25 Aligned_cols=197 Identities=15% Similarity=0.057 Sum_probs=137.0
Q ss_pred cCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHH
Q 011323 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (488)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (488)
|.+..........+.+.|++++|+..|++.++.+ |.+...+..++..+...|++++|+..|+++. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4445556666677778888888888888888876 7777777788888888888888888887654 4566777777
Q ss_pred HHHHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011323 99 MSVCASS-----------KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (488)
Q Consensus 99 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (488)
..++... |++++|+..++...+.. +.+...+..+..++...|++++|++.|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7788777 88888888887777664 4456777777777888888888888888877765 56777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7888888888888888888777653 3456677777777777888888777776653
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.6e-14 Score=125.21 Aligned_cols=228 Identities=13% Similarity=0.036 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----cchH
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITI 237 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ 237 (488)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+++.....+...++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 5678888999999999999999999998886 788899999999999999999999999987642222222 3678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011323 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (488)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (488)
..+...+...|++++|...++.+.... |+. ..+.+.|++++|...++++...... +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 888899999999999999999998864 443 4466678899999999998886433 567788888899999
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998875 4468889999999999999999999999998765 456888999999999999999999999
Q ss_pred HHHHhC
Q 011323 398 SDMKSL 403 (488)
Q Consensus 398 ~~~~~~ 403 (488)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998763
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=5.5e-15 Score=124.35 Aligned_cols=196 Identities=13% Similarity=-0.056 Sum_probs=104.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..+..+...+...|++++|...|+...+.. +.++..+..+...+.+.|++++|...+++..+..+. +...+..+..++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344444445555555555555555555443 334455555555555555555555555555544322 344455555555
Q ss_pred Hhc-----------CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 315 GHA-----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (488)
Q Consensus 315 ~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 383 (488)
... |++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+.. .+...+..+..+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 555 66666766666666653 2345666666666667777777777777666555 556666666666
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
|...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777666531 3345566666666677777777766665543
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.69 E-value=8.1e-15 Score=137.74 Aligned_cols=372 Identities=11% Similarity=-0.017 Sum_probs=246.8
Q ss_pred HHHHHhhhHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 011323 67 FFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141 (488)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 141 (488)
+...+.+.|++++|+++|++..+ .+...+..+...+...|+. ++|++.|+...+. ++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 45667778999999999987642 3455566666677777888 8999999988753 5556666766555554
Q ss_pred ----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC--
Q 011323 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV---AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-- 212 (488)
Q Consensus 142 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-- 212 (488)
+.++|.+.|++..+.|. ...+..|...|...+.. ..+.+.+......| +......+...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 78899999999998763 23667777777765543 34556666665555 34566677777777774
Q ss_pred --HHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc----C
Q 011323 213 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 283 (488)
Q Consensus 213 --~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 283 (488)
.+.+..+++..... .|+ .+..+...|...| +.++|...|+...+.+ +++...+..+...|... +
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHcC----CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 44555555554432 343 7888888899999 9999999999999987 56666667777777665 7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-----CH
Q 011323 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 355 (488)
Q Consensus 284 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 355 (488)
++++|...|++.. .| +...+..+... + ...+++++|...|++..+.| ++..+..+...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999988 43 44556666665 4 56899999999999999887 6777888888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHH
Q 011323 356 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEV 427 (488)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 427 (488)
++|...|++.. +.+...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 99999999877 3466777778877776 4489999999999998763 3344556656653 568999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhh-cHHHHHHHHHHhhh
Q 011323 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLS 470 (488)
Q Consensus 428 a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~a~~~~~~~~~ 470 (488)
|..+|+...+.|..........+...... +..+|..+.+..+.
T Consensus 377 A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 377 AYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999988754322222222211111 56666666655443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.65 E-value=5.7e-14 Score=122.90 Aligned_cols=125 Identities=13% Similarity=0.094 Sum_probs=49.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc--chHHHHHHHHHh
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH--ITIGALMKACAN 246 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 246 (488)
...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++.... +..++. ..+..+...+..
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK--VNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHHH
Confidence 334444444444444444444332 122233444444444444444444444444331 111111 113334444444
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
.|++++|...++...+.. +.+..++..+...+...|++++|...+++..+
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 444444444444444332 22333444444444444444444444444333
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=1.5e-13 Score=118.66 Aligned_cols=200 Identities=12% Similarity=0.042 Sum_probs=137.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 345556666667777777777777766654 445666777777777777777777777776665432 566667777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 011323 315 GHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 393 (488)
...|++++|.+.++++.+.+. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766222 2245666777777777777777777777776654 34566777777777777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
...++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 87777776642 445666777777777778888888877777764
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=9.4e-15 Score=128.10 Aligned_cols=223 Identities=11% Similarity=-0.047 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
.++..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+...|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 344445555555555555555555555443 3345555555555555566666666665555542 22445555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (488)
...|++++|...|+++.+. .|+.......+..+...|++++|...+++..... +++... ..++..+...++.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWG-WNIVEFYLGNISEQT 195 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTH-HHHHHHHTTSSCHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CcchHH-HHHHHHHHHhcCHHH
Confidence 6666666666666555544 2332223333333344456666666665544421 122222 234445555555556
Q ss_pred HHHHHHHHHhcCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 253 AREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 253 a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 327 (488)
|...+......... .+..++..+...+.+.|++++|...|++..+..+. +. .....++...|++++|++.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 66665555433211 11355666666666667777777777666654321 21 12233445556666665554
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=2.6e-14 Score=125.26 Aligned_cols=245 Identities=10% Similarity=-0.029 Sum_probs=117.5
Q ss_pred CChhHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAGL---KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 182 (488)
|++++|++.++.+.+... +.+..++..+...+...|++++|.+.|++..+.. +.+..+|..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555554321 1123445555555555566666666665555542 224555555555555566666666
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
..|++..... +.+..++..+..++...|++++|...++++... .|+.......+..+...|++++|...++....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 6665555442 223455555555555566666666655555542 23333333333344445555566655554444
Q ss_pred cCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH
Q 011323 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (488)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 339 (488)
.. +++...+ .++..+...++.++|...+.+........ +...+..+...+...|++++|...++++.+... .+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~ 249 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV-HNF 249 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTC
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc-hhH
Confidence 32 2222222 24444555555555555555544332110 134455555555555666666666655555431 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELY 362 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~ 362 (488)
. ....++...|++++|.+.+
T Consensus 250 ~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 V---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHHhhHHHH
Confidence 1 1233444455555554443
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=2.1e-13 Score=119.26 Aligned_cols=195 Identities=10% Similarity=0.022 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGC 172 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 172 (488)
+......+...|++++|+..++...+.. +.+...+..+..++...|++++|.+.+++..+.+..++ ..+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455566666666666666666543 33444566666666666666666666666665321111 22355666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CcchHHHHHHHHHhcCCHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVD 251 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 251 (488)
...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++.... .| +...+..+...+...++++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS----SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc----CCCcHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 233455555666666666666666666555442 22 2223333331233334555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHH
Q 011323 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---WEFACSVYDDMT 296 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 296 (488)
+|...|+.+.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 5555555555543 3334444444444444444 444444444433
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.63 E-value=6.7e-13 Score=114.59 Aligned_cols=200 Identities=12% Similarity=0.015 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...+..+...+...|++++|++.++.+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455555556666666666666666655543 3345555555666666666666666666555542 2244555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCH
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (488)
+...|++++|.+.++++...+..| +...+..+..++...|++++|.+.+++..... +.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCH
Confidence 555555555555555555421122 23344444444555555555555555444321 11223334444444444444
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444332 23333444444444444444444444444443
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=5.8e-13 Score=112.67 Aligned_cols=95 Identities=7% Similarity=-0.063 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 173 (488)
.+..+...+...|++++|++.++.+.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444444444444444444332 2233344444444444444444444444444331 123333444444444
Q ss_pred hc-CCHHHHHHHHHHHHh
Q 011323 174 KA-GQVAKAFGAYGIMRS 190 (488)
Q Consensus 174 ~~-~~~~~a~~~~~~~~~ 190 (488)
.. |++++|...++++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALA 105 (225)
T ss_dssp TTTCCHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHHHHc
Confidence 44 444444444444433
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=3.2e-13 Score=114.29 Aligned_cols=198 Identities=7% Similarity=-0.078 Sum_probs=103.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (488)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+.... +..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 34444445555555555555555554443 334445555555555555555555555555543322 4445555555555
Q ss_pred hc-CCHHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 011323 316 HA-GKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (488)
Q Consensus 316 ~~-g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 393 (488)
.. |++++|...++.+.+.+. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 55 555555555555554211 1224455555555556666666666665555433 23355555555566666666666
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 394 MEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 394 ~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
...++++.+.. + .+...+..+...+...|+.+.+..+++.+.+
T Consensus 167 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666555432 2 3444555555555566666666666655554
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=9.9e-14 Score=126.26 Aligned_cols=242 Identities=10% Similarity=0.042 Sum_probs=180.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHH-HHHHHHHhhhCC---CCCHHHHHHHHHHHH
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFFKLVP---NPTLSTFNMLMSVCA 103 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 103 (488)
.......+.+.|++++|++.|+++++.+ |.+...+..++.++...|+ +++|+..|+++. +.+..+|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3334455558899999999999999887 7888888888888888886 999999988764 457778888888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH-
Q 011323 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK-AGQVAKA- 181 (488)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a- 181 (488)
..|++++|+..|+++.+.. +.+...|..+..++...|++++|++.++++++.. +.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 8899999999999888775 5577888888888889999999999999988874 3467888888888888 5554666
Q ss_pred ----HHHHHHHHhCCCCCCHhHHHHHHHHHHccC--CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC-------
Q 011323 182 ----FGAYGIMRSKNVKPDRVVFNALITACGQSG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG------- 248 (488)
Q Consensus 182 ----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 248 (488)
+..|++..... +-+...|+.+...+...| ++++|++.+.++ .. ...+...+..+..+|.+.|
T Consensus 256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~---~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP---SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT---TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc---CCCCHHHHHHHHHHHHHHhcccccch
Confidence 47777777653 345677888888887777 578888888777 32 1233456667777777653
Q ss_pred --CHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHH
Q 011323 249 --QVDRAREVYKMI-HKYNIKGTPEVYTIAINCC 279 (488)
Q Consensus 249 --~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 279 (488)
..++|..+++.+ .+.+ +.....|..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247788888887 5543 33445555554443
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=2.5e-12 Score=112.43 Aligned_cols=221 Identities=11% Similarity=-0.012 Sum_probs=111.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011323 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (488)
Q Consensus 199 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (488)
++..+...+...|++++|.+.|++.... .+...+..+...+.. .+++++|...|++..+.+ ++..+..
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3334444444444444444444444331 112233334444444 455555555555444433 3444444
Q ss_pred HHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 011323 275 AINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (488)
Q Consensus 275 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (488)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 555555555555555442 44445555555555 555555555555555543 344445555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 347 GACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 347 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 55555 556666666666555432 34455555555555 566666666666655542 14445555555
Q ss_pred Hhh----cCCHHHHHHHHHHHHHcC
Q 011323 419 CER----KDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 419 ~~~----~g~~~~a~~~~~~~~~~~ 439 (488)
+.. .+++++|.+.+++..+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555 566666666666655543
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=3.3e-13 Score=122.79 Aligned_cols=249 Identities=10% Similarity=0.059 Sum_probs=184.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALI 169 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 169 (488)
+...|..+..++...|++++|++.++.+.+.. +-+..+|+.+..++...|+ +++|++.|++.++.. +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34577778888888999999999999888775 5577888888889999996 999999999988874 34678888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh-cC
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AG 248 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 248 (488)
.++...|++++|+..|+++.... +-+...|..+..++...|++++|+..++++.... +.+...|+.+..++.. .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999988774 4567888888888888888888988888887742 2244577777777777 55
Q ss_pred CHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 011323 249 QVDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--- 318 (488)
Q Consensus 249 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 318 (488)
..++| +..++...... +.+...|..+...+...| ++++|.+.+.++ +.. ..+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 54666 47777777765 556777877777777777 577788777776 332 235667777777777653
Q ss_pred ------CHHHHHHHHHHH-HHCCCCccHHHHHHHHHHH
Q 011323 319 ------KVEAAFEILQEA-KNQGISVGIISYSSLMGAC 349 (488)
Q Consensus 319 ------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 349 (488)
..++|.++++++ .+.. +.....|..+...+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247777777777 4433 33344555554443
No 54
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=3.2e-11 Score=117.16 Aligned_cols=430 Identities=12% Similarity=0.059 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCC---hhHHHHHHH
Q 011323 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQVLR 116 (488)
Q Consensus 43 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 116 (488)
+-+..|++.+..+ |.+...+..++..+.+.+.++.++.+|+++. +.....|...+..-.+.++ ++.+.++|+
T Consensus 50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3444455555554 5555555556666655566666666666543 3455556666666556666 666666666
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHHcCCH--------hHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH---------hc
Q 011323 117 LVQEAG-LKADCKLYTTLITTCAKSGKV--------DAMFEVFHEMVN-AGI-EP-NVHTYGALIDGCA---------KA 175 (488)
Q Consensus 117 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~ 175 (488)
+..... .+|++..|...+....+.++. +.+.++|+.... .|. .+ +...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 665442 125666666655554444432 223355555433 344 33 3355555554432 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHH---HHHH----------ccCCHHHHHHHHHHHhhCCCCCC-----------
Q 011323 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALI---TACG----------QSGAVDRAFDVLAEMNAEVHPVD----------- 231 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---~~~~----------~~g~~~~a~~~~~~~~~~~~~~~----------- 231 (488)
++++.+.++|+.........-..+|.... .... ...+++.|...+.++.....++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 34555666666665431111122222111 1100 01122333444433221100100
Q ss_pred ----C--C------cchHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH-HH
Q 011323 232 ----P--D------HITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC-SV 291 (488)
Q Consensus 232 ----~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~ 291 (488)
| + ...|...+..--..+ ..+.+..+|+...... +..+..|...+..+...|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 0 0 012222332211111 1233455676666553 556777777777777777777775 88
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------Cc------------cHHHHHHHHHHHH
Q 011323 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGACS 350 (488)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~ 350 (488)
|++..... +.+...+...+....+.|+++.|.++|+.+.+... .| ...+|...+....
T Consensus 367 l~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 87776642 23555566667777777888888888877765310 12 1235666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 011323 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (488)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 429 (488)
+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|+...+. .+-+...|..++......|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 7777888888888877641112233443333333333 3477888888877764 3445666667777777778888888
Q ss_pred HHHHHHHHcCCCC--cHHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 430 MLLSQAKEDGVIP--NLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 430 ~~~~~~~~~~~~~--~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
.+|+++.+....+ ....|...+..-.+ ..+.+..+.+++....|.++.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 8888777654321 23355555554333 567777787777777776554
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=4.8e-12 Score=110.67 Aligned_cols=223 Identities=12% Similarity=0.007 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchH
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (488)
..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++....+ +...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~ 77 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHH
Confidence 3344444444444455555555554444421 23344444444444 455555555555544321 23344
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 238 GALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (488)
Q Consensus 238 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (488)
..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 444445555 555555555555555443 44555555555555 666666666666665543 3444555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 310 LIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (488)
Q Consensus 310 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 381 (488)
+...|.. .+++++|...+++..+.+ ++..+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 5555555 666677777666666653 34556666666666 677777777777766643 245566666
Q ss_pred HHHHc----CCChhHHHHHHHHHHhCC
Q 011323 382 TALCD----GDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 382 ~~~~~----~~~~~~a~~~~~~~~~~~ 404 (488)
..|.. .+++++|.+.+++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666 677777777777766543
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=9.8e-14 Score=119.10 Aligned_cols=200 Identities=14% Similarity=0.063 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...|..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3455555566666677777777777666543 4456666666666777777777777777666553 3355666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHH
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (488)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCHH
Confidence 666777777777776666543 3345556666666666666666666666655431 123344555555666666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
+|...++.+.+.. +.+..++..+...+...|++++|...+++..+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666666655543 344555566666666666666666666665554
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=1.1e-13 Score=118.78 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=116.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHH
Confidence 344555555666666666666666666543 445566666666666666666666666666654332 556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 011323 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 66777777777776666553 3345666666666777777777777777666543 345666666667777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
..++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777766542 334566666777777777777777777776664
No 58
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.58 E-value=5.5e-11 Score=115.53 Aligned_cols=418 Identities=8% Similarity=0.008 Sum_probs=282.0
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHH---HHHHHHHhhhCC--C---CCHHHH
Q 011323 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP--N---PTLSTF 95 (488)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~--~---~~~~~~ 95 (488)
++.+|..|+ +.+.++.|..+|++++..- |....+....+..-.+.+. .+.+..+|+++. - +++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455665555 6799999999999999874 7777777677777778888 999999999875 2 888899
Q ss_pred HHHHHHHHhcCCh--------hHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH---------HcCCHhHHHHHHHHHHH
Q 011323 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KA-DCKLYTTLITTCA---------KSGKVDAMFEVFHEMVN 155 (488)
Q Consensus 96 ~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 155 (488)
...+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888776665543 334577776653 455 44 4567877776543 34457889999999885
Q ss_pred cCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----C-----------C-----C---H
Q 011323 156 AGIEPNVHTYGALIDGCAK-------------AGQVAKAFGAYGIMRS--KNV----K-----------P-----D---R 197 (488)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~--~~~----~-----------~-----~---~ 197 (488)
........+|......-.. ..+++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 4222223344322221111 1223445555554321 111 1 1 0 1
Q ss_pred hHHHHHHHHHHccC-------CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCCCH
Q 011323 198 VVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTP 269 (488)
Q Consensus 198 ~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~ 269 (488)
..|...+..--..+ ..+.+..+|++.... .+-....|...+..+...|+.+.|. .+|+..... ++.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 33444444332222 133456778888764 2234457777778788889999996 999998875 36677
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---------IPD------------EVFLSALIDFAGHAGKVEAAFEILQ 328 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~ 328 (488)
..+...+...-+.|+++.|.++|+++..... .|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7788888899999999999999999876310 132 2357777788888899999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 011323 329 EAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (488)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 407 (488)
...+.........|...+..-.+. ++.+.|.++|+...+. .+.+...|...+......|+.+.|..+|++......++
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 998861122334444333333444 4599999999998875 34567777788888888999999999999998763222
Q ss_pred --CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 408 --NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 408 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
....|..++.--...|+.+.+.++.+++.+.- |+......+++-|
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 35678888888889999999999999999864 3333344444444
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=2.3e-12 Score=105.26 Aligned_cols=166 Identities=17% Similarity=0.072 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 011323 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (488)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (488)
++.+|..+...|.+.|++++|+..|++..+..+. +...+..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4455666666666666666666666666655433 55566666666666666666666666665543 334555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 011323 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (488)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (488)
.+...++++.+...+.+..... +.+...+..+...|.+.|++++|++.+++..+.. +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665543 3455666666666666677777777766666532 3345666666666777777777
Q ss_pred HHHHHHHHHH
Q 011323 428 GLMLLSQAKE 437 (488)
Q Consensus 428 a~~~~~~~~~ 437 (488)
|++.|+++.+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766665
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=3.4e-13 Score=125.40 Aligned_cols=156 Identities=13% Similarity=-0.046 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISV-GI 339 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 339 (488)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+. +..+ ..
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3566666677777777777777766553210 111 235666666777777777777777766532 1111 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NT 409 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~ 409 (488)
.++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++..+. +..+ ..
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 5666777777777888877777776653210 011 445666777777777888887777775431 2111 13
Q ss_pred HHHHHHHHHHhhcCCH
Q 011323 410 ITYSILLVACERKDDV 425 (488)
Q Consensus 410 ~~~~~l~~~~~~~g~~ 425 (488)
.++..+...+...|+.
T Consensus 348 ~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHh
Confidence 4455555666555554
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=2.4e-13 Score=126.43 Aligned_cols=300 Identities=14% Similarity=0.027 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCC-C
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-N 161 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 161 (488)
....+......+...|++++|+..|+...+.+ +.+ ..++..+...+...|++++|.+.+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455566667778888888888888877663 223 346777778888888888888888776542 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCC--------------------HHHH
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRA 216 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~--------------------~~~a 216 (488)
..++..+...+...|++++|...+++...... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44677777788888888888888877654310 011 3466777777888888 8888
Q ss_pred HHHHHHHhhCCCCC--CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHccCChHHH
Q 011323 217 FDVLAEMNAEVHPV--DP-DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGT----PEVYTIAINCCSQTGDWEFA 288 (488)
Q Consensus 217 ~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a 288 (488)
...+++........ .+ ...++..+...+...|++++|...++...+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88877654321011 11 123567778888899999999999887765321 111 23778888899999999999
Q ss_pred HHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-ccHHHHHHHHHHHHhcCCHHHH
Q 011323 289 CSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQG----IS-VGIISYSSLMGACSNAKNWQKA 358 (488)
Q Consensus 289 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a 358 (488)
...+++....... ++ ..++..+...+...|++++|...+++..+.. .. ....++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999887643111 11 4567788889999999999999998876531 11 1256788888999999999999
Q ss_pred HHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCChh
Q 011323 359 LELYEHMKSI----KL-KPTVSTMNALITALCDGDQLP 391 (488)
Q Consensus 359 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~ 391 (488)
...+++..+. +. .....++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9999987642 21 112345556666666666553
No 62
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=3.4e-12 Score=117.63 Aligned_cols=232 Identities=9% Similarity=-0.061 Sum_probs=145.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCHHHHH
Q 011323 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNI------KGTPEVYT 273 (488)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 273 (488)
....+...|++++|...+++.......... ...++..+...+...|+++.|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455666666666666666542111111 123455666666777777777777766544311 11134566
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CccHHHHH
Q 011323 274 IAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYS 343 (488)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 343 (488)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777777888888888877776542110 11 235667777888888888888888877662 22 33466778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 011323 344 SLMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l 415 (488)
.+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888888888888888876542 111122334566677777887 66677666665 22333 4566778
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH
Q 011323 416 LVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
...|...|++++|...++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888887764
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.53 E-value=4e-13 Score=125.23 Aligned_cols=277 Identities=15% Similarity=0.025 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHhH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----N-VKPDRVV 199 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 199 (488)
.+..+...+...|++++|.+.|++..+.+ +.+. ..+..+...|...|++++|...+++.... + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 44445556666677777777776666652 1122 35556666666666666666666666542 0 0112233
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011323 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (488)
Q Consensus 200 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (488)
+..+...+...|++++|...+++......... +.+....++..+...|
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLG--------------------------------DRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--------------------------------chHHHHHHHHHHHHHH
Confidence 44444455555555555555554433100000 0011123455555555
Q ss_pred HccCC-----------------hHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 011323 280 SQTGD-----------------WEFACSVYDDMTKK----GVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-- 335 (488)
Q Consensus 280 ~~~~~-----------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 335 (488)
...|+ +++|...+.+..+. +.. ....++..+...+...|++++|...+++..+...
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55566 56666655554321 111 1224566677777788888888888777654311
Q ss_pred ---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---C--CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----
Q 011323 336 ---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL---K--PTVSTMNALITALCDGDQLPKTMEVLSDMKSL---- 403 (488)
Q Consensus 336 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 403 (488)
......+..+...|...|++++|...+++..+... . ....++..+...|...|++++|...+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01123677888888899999999998887764210 0 11456778888899999999999999887642
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 404 GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 404 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
+..+ ...++..+...+...|++++|..+++++.+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1457788889999999999999999988874
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.52 E-value=1.2e-12 Score=120.57 Aligned_cols=307 Identities=10% Similarity=0.020 Sum_probs=143.0
Q ss_pred CCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CchHHHHHHHH--HHHhhhHHHHHHH-----------HHhhhC
Q 011323 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL---DMDKVYHARFF--NVCKSQKAIKEAF-----------RFFKLV 87 (488)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~--~~~~~~~~~~~A~-----------~~~~~~ 87 (488)
.+...+..|-..++++++++|..+++++.+.-.. ..+...+..+. +.....+.++.+. +.++.+
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 3556777899999999999999999998754211 11222111111 1111223333333 333332
Q ss_pred CC--CCHHH------HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011323 88 PN--PTLST------FNMLMSVCASSKDSEGAFQVLRLVQEA----GLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (488)
Q Consensus 88 ~~--~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (488)
.. .+... +......+...|++++|++.++...+. +-++ ...++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 91 DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 10 01111 111333445556666666666655432 1011 22345555555666666666666555544
Q ss_pred HcCC-CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 011323 155 NAGI-EP-----NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (488)
Q Consensus 155 ~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 227 (488)
+.-. .+ ...+++.+...|...|++++|...|++..+... .++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------- 221 (383)
T 3ulq_A 171 EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ----------------------------- 221 (383)
T ss_dssp HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----------------------------
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH-----------------------------
Confidence 3200 01 123445555555555555555555555442200 00000
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC----
Q 011323 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY----NI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---- 298 (488)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 298 (488)
....++..+..+|...|++++|...++...+. +. +....++..+...+.+.|++++|...+++..+.
T Consensus 222 ----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 222 ----LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 00113444444445555555555554444331 11 222444555555555555555555555544331
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 299 GVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
+.......+..+...+...|+ +++|+.+++.. +.. .....+..+...|...|++++|...+++..
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111111223445555555565 44454444443 212 223355566666667777777776666654
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=4.4e-12 Score=103.59 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=117.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (488)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (488)
...|..+...+...|++++|...|++..+.. +.++.++..+..+|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3456667777777777777777777776665 456667777777777777777777777776665443 55666666667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 011323 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (488)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 393 (488)
+...++++.+...+.+..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 777777777777777776654 3456677777777777778888877777777654 45667777777777778888888
Q ss_pred HHHHHHHHh
Q 011323 394 MEVLSDMKS 402 (488)
Q Consensus 394 ~~~~~~~~~ 402 (488)
++.|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777776
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=4.5e-13 Score=124.85 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CC-CCCHHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHT 164 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 164 (488)
.+..+...+...|++++|+..|+.+.+.+ +.+. ..+..+...+...|++++|.+.+++..+. +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455667888999999999999988764 3333 47888888899999999999999887653 11 223467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHhHHHHHHHHHHccCC-----------------HHHHHHHHHH
Q 011323 165 YGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVVFNALITACGQSGA-----------------VDRAFDVLAE 222 (488)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~ 222 (488)
+..+...|...|++++|...+++.... +- +....++..+...+...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788888999999999999999887643 11 1123466667777777777 6666666655
Q ss_pred HhhCCCCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 223 MNAEVHPV---DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 223 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
........ .....++..+...+...|++++|...++...+.... .+..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------- 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------- 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------------------
Confidence 43210000 001123444455555555555555555544332100 0100
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----
Q 011323 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-----SVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---- 369 (488)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 369 (488)
.....+..+...+...|++++|...+++..+... .....++..+...|...|++++|...+++.....
T Consensus 261 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 261 ---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp ---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 0011334444444444555554444444332110 0113344555555555555555555555544210
Q ss_pred -CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 370 -LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 370 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
......++..+...|...|++++|.+.+++..+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 001123455555666666666666666666554
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=8.3e-13 Score=119.19 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTI 410 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~ 410 (488)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+. +-.+ ...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 344444445555555555555544432100 001 334445555555566666666655554321 1001 133
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
++..+...+...|++++|...++++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455566666666666666666666654
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=5.9e-11 Score=105.61 Aligned_cols=237 Identities=14% Similarity=0.071 Sum_probs=182.4
Q ss_pred HhHHHHHHHHHHcc----CCH----HHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH-------hcCCH-------HHHH
Q 011323 197 RVVFNALITACGQS----GAV----DRAFDVLAEMNAEVHPVDPDHITIGALMKACA-------NAGQV-------DRAR 254 (488)
Q Consensus 197 ~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~ 254 (488)
...|...+....+. ++. ++|..+|++..... +.+...|..++..+. ..|++ ++|.
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 45666777665443 233 68889999988742 234456777776665 35885 8999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 333 (488)
.+|++....-.+.+...|..++..+.+.|++++|..+|++..+..+. +.. .|..++..+.+.|++++|..+|++..+.
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999988322557778999999999999999999999999885432 333 7888889999999999999999999886
Q ss_pred CCCccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCC--CH
Q 011323 334 GISVGIISYSSLMGACS-NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP--NT 409 (488)
Q Consensus 334 ~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~ 409 (488)
. +.+...|........ ..|+.++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ++| ..
T Consensus 164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 5 334555554443322 3799999999999988754 4567889999999999999999999999998852 455 36
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 011323 410 ITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
..|..++......|+.+.|..+++++.+..
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 678888888999999999999999988753
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=6e-11 Score=105.54 Aligned_cols=216 Identities=9% Similarity=0.099 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCH-------hHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKV-------DAMFEVFHEMVN-AGIEPNVHTYGALIDGCA 173 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 173 (488)
++|..+|+...+.. +.+...|..++..+.. .|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56666777666543 4456666666666543 3554 666666666665 21 224456666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-Hh-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH-hcCCH
Q 011323 174 KAGQVAKAFGAYGIMRSKNVKPD-RV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQV 250 (488)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 250 (488)
..|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..... +.+...|........ ..|++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCH
Confidence 666666666666666654 332 22 56666666666666666666666665431 111222222211111 13555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIP--DEVFLSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 327 (488)
+.|..+|+...+.. +.++..+..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555554432 2344455555555555555555555555554431 122 2334444444444445555554444
Q ss_pred HHHHH
Q 011323 328 QEAKN 332 (488)
Q Consensus 328 ~~~~~ 332 (488)
+++.+
T Consensus 265 ~~a~~ 269 (308)
T 2ond_A 265 KRRFT 269 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=1e-12 Score=118.55 Aligned_cols=273 Identities=14% Similarity=0.044 Sum_probs=144.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCC-CCHHHHH
Q 011323 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIE-PNVHTYG 166 (488)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 166 (488)
......+...|++++|+..++.+.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334456677777888888887777653 223 356667777777778888777777765432 111 1244566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCC--------------------HHHHHHHHH
Q 011323 167 ALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRAFDVLA 221 (488)
Q Consensus 167 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~ 221 (488)
.+...+...|++++|...+++...... .++ ..++..+...+...|+ +++|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 677777777777777777776553210 011 2245555555666665 555555544
Q ss_pred HHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011323 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (488)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 300 (488)
+.... .. ..+ .+....++..+...+...|++++|...+++..+...
T Consensus 168 ~a~~~------------------------------~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 168 ENLSL------------------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHH------------------------------HH---HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH------------------------------HH---hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 43221 00 000 000122344444445555555555555544332100
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 011323 301 -IPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQG----IS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIK- 369 (488)
Q Consensus 301 -~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 369 (488)
.++ ..++..+...+...|++++|...+++..+.. .. ....++..+...+...|++++|...+++..+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 001 1244555555556666666666665544321 00 113455566666666666666666666654321
Q ss_pred ---C-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 370 ---L-KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 370 ---~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
. .....++..+...|.+.|++++|...+++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0 01133555666666777777777777776654
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=3.9e-12 Score=120.24 Aligned_cols=213 Identities=13% Similarity=0.018 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011323 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (488)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 291 (488)
++++.+.+++.... .+.+...+..+...+...|++ ++|...|+...+.. +.+...+..+..+|...|++++|...
T Consensus 84 ~~~al~~l~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGS---AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTT---CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhcc---CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455555544432 112344555566666666666 77777776666654 44566677777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--------CC
Q 011323 292 YDDMTKKGVIPDEVFLSALIDFAGHA---------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--------KN 354 (488)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 354 (488)
|++..+.. |+...+..+...+... |++++|...+++..+.. +.+...+..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 77766653 4456666666777776 77777777777777654 34567777777777777 77
Q ss_pred HHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 011323 355 WQKALELYEHMKSIKLK---PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 431 (488)
+++|...|++..+.. + .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877653 2 467778888888888888888888888877642 33466677777778888887777765
Q ss_pred HHH
Q 011323 432 LSQ 434 (488)
Q Consensus 432 ~~~ 434 (488)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 543
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=3.2e-12 Score=120.88 Aligned_cols=214 Identities=11% Similarity=0.002 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
++++++.++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555444322 33455555666666666666 66666666655542 2235566666666666666666666666
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHcc---------CCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc--------CC
Q 011323 187 IMRSKNVKPDRVVFNALITACGQS---------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--------GQ 249 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 249 (488)
+..+. .|+...+..+..++... |++++|++.+++..... +.+...|..+..+|... |+
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 66554 34455555566666666 66666666666655431 12234555555666555 66
Q ss_pred HHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 250 VDRAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 250 ~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
+++|...|+...+.. + .++..+..+..+|...|++++|...|++..+.... +...+..+..++...|++++|.+.
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666553 3 45666666666666667777777766666655433 455566666666666666666665
Q ss_pred HHHH
Q 011323 327 LQEA 330 (488)
Q Consensus 327 ~~~~ 330 (488)
+..+
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 5443
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=1.1e-10 Score=107.17 Aligned_cols=230 Identities=11% Similarity=-0.067 Sum_probs=158.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C----CCHHHHHH
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNI--K----GTPEVYTI 274 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~~ 274 (488)
...+...|++++|...+++.......... ...++..+...|...|+++.|...++...+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34456778888888888777653211111 123566677778888888888888876654311 1 12446777
Q ss_pred HHHHHHccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCccHHHHHH
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYSS 344 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 344 (488)
+...|...|++++|.+.+.+..+. +..+ ...++..+..+|...|++++|...+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 888888889999988888876652 1111 234677788888899999999999988876 43 334778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSILL 416 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 416 (488)
+...+.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|+..+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 8999999999999999998886531 12223445556666777777 77777777762 22333 45667788
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 011323 417 VACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..|...|++++|...++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999988764
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=9.1e-13 Score=117.61 Aligned_cols=133 Identities=15% Similarity=0.067 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CC
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 158 (488)
..++..+...+...|++++|+..++.+.+. ..+....++..+...+...|++++|.+.+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666777777777777777666652 12233455666666666777777777766666543 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 159 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
+....++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|.+.+++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112345555666666666666666666655432 1111 12334444444444455555555444443
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=9.6e-12 Score=110.91 Aligned_cols=241 Identities=12% Similarity=0.030 Sum_probs=159.2
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-----CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc------C
Q 011323 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-----PVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N 264 (488)
Q Consensus 196 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 264 (488)
+..++..+...+...|++++|..+++++..... .......++..+...+...|++++|...++.+... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356677888888999999999999998876200 01122446777888888899999999999877654 1
Q ss_pred -CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 011323 265 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 333 (488)
Q Consensus 265 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 333 (488)
.+....++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223567788888899999999999999887754 2222 3456777788888899999999999887764
Q ss_pred ---C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCH-------HHHHHHHHHHHcCCChhHHHH
Q 011323 334 ---G-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-------KLKPTV-------STMNALITALCDGDQLPKTME 395 (488)
Q Consensus 334 ---~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 395 (488)
+ .+....++..+...|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 1223457788888888999999999998888742 111111 112222333445566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.++..... .+....++..+...|...|++++|.++++++.+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77666543 133466788888889999999999999888765
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.40 E-value=3.5e-10 Score=103.73 Aligned_cols=167 Identities=12% Similarity=-0.050 Sum_probs=83.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--ccHHHHH-
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVI----PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS--VGIISYS- 343 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~- 343 (488)
.+..+...+...|++++|...+++....... ....++..+...+...|++++|...+++....... .......
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3444455555556666665555554432111 01234555555566666666666666655432101 1111111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCCH-HHH
Q 011323 344 ---SLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNT-ITY 412 (488)
Q Consensus 344 ---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~~-~~~ 412 (488)
..+..+...|++++|...+++.......+ ....+..+...+...|++++|...+++... .|.+++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 12233556666666666666655432111 122344555666666777777766666542 2211222 244
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 413 SILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..+..++...|+.++|...+++..+
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555666667777777777666553
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=1.7e-10 Score=105.99 Aligned_cols=232 Identities=9% Similarity=-0.016 Sum_probs=154.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---C-CcchHH
Q 011323 168 LIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---P-DHITIG 238 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~-~~~~~~ 238 (488)
....+...|++++|+..|++...... .++ ..++..+...|...|+++.|...+++......... + ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44455677888888888887764310 112 34566677777888888888877777654211111 1 133566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 011323 239 ALMKACANAGQVDRAREVYKMIHKYN----IK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLS 308 (488)
Q Consensus 239 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 308 (488)
.+..+|...|++++|...++...+.. .+ ....++..+..+|...|++++|...+++..+ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 77778888888888888887665531 11 1134677788888888888888888888766 3333 366777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 309 ALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPTVSTMNALI 381 (488)
Q Consensus 309 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~ 381 (488)
.+...+.+.|++++|...+++..+.. .+.....+..+...+...++ +.+|...++... ..+.....+..+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHH
Confidence 88888888899999998888877642 12224456666667777777 677777766522 1112234566778
Q ss_pred HHHHcCCChhHHHHHHHHHHh
Q 011323 382 TALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..|...|++++|...+++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888899999999998888754
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=4.8e-10 Score=94.89 Aligned_cols=131 Identities=17% Similarity=0.027 Sum_probs=64.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..+......+...|++++|...|+...+...+++...+..+..++...|++++|...+++..+..+. +...+..+..++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 3444445555555555555555555555442244444444555555555555555555555544322 334445555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 315 GHAGKVEAAFEILQEAKNQGISVGI-------ISYSSLMGACSNAKNWQKALELYEHMKS 367 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 367 (488)
...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|+++.+
T Consensus 87 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 55555555555555555432 1122 2344444444455555555555555444
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=8.5e-10 Score=101.14 Aligned_cols=268 Identities=12% Similarity=0.038 Sum_probs=150.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHH
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGALI 169 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~ 169 (488)
...+...|++++|...++.........+.. ++..+...+...|++++|.+.+++...... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566778888888887776543222221 455566677777888888888777654210 111 12355666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--cchHHHH
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSK----NVK--P-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGAL 240 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l 240 (488)
..+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++.........+. ..++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7777788888888887776542 211 2 23345556667777888888888877765532221111 1345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-C-HHHHH----HHHHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNIKG-T-PEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALI 311 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 311 (488)
...+...|++++|...++........+ . ..... ..+..+...|++++|...+++.......+ ....+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 666777777777777777665431111 1 11111 22233556777777777776655432211 122344555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQ----GISVGI-ISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
..+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++..
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5666666666666666655432 111111 244445555566666666666665554
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=8.8e-11 Score=95.73 Aligned_cols=162 Identities=13% Similarity=0.071 Sum_probs=87.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (488)
+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 444444555555555555555554443222 44455555555555555555555555555442 2344555555555556
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 011323 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 431 (488)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666665555443 3345555555566666666666666666655432 33455555666666666666666666
Q ss_pred HHHHHH
Q 011323 432 LSQAKE 437 (488)
Q Consensus 432 ~~~~~~ 437 (488)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=3.1e-10 Score=92.39 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (488)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (488)
...+..++..+...|++++|.+.|+++. +.+..++..+...+...|++++|.+.++.+.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444455666666677777777777654 2455667777777777777777777777776653 44566777777777
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011323 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (488)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 217 (488)
...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777776653 3456667777777777777777777777776653 345566667777777777777777
Q ss_pred HHHHHHhh
Q 011323 218 DVLAEMNA 225 (488)
Q Consensus 218 ~~~~~~~~ 225 (488)
..+++...
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=8.4e-11 Score=115.66 Aligned_cols=162 Identities=13% Similarity=0.064 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (488)
+++.+..++.+.|++++|.+.|++..+.. +.+..++..+..+|.+.|++++|+..|++..+.... +...+..+..++.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44455555555555555555555554443 334445555555555555555555555554443322 3444444445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
..|++++|++.|++..+.. +-+...++.+..+|...|++++|...|++..+.. +.+...|..+..++...|++++|.+
T Consensus 89 ~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHH
Confidence 5555555555555444432 2234444444444455555555555554444432 2234444444444444444444444
Q ss_pred HHHHHH
Q 011323 396 VLSDMK 401 (488)
Q Consensus 396 ~~~~~~ 401 (488)
.++++.
T Consensus 167 ~~~kal 172 (723)
T 4gyw_A 167 RMKKLV 172 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=1.5e-10 Score=113.95 Aligned_cols=164 Identities=15% Similarity=0.114 Sum_probs=106.6
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011323 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (488)
Q Consensus 197 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (488)
..+++.+..++.+.|++++|++.|++..+. .|+ ..++..+..+|.+.|++++|...|++..+.. +.+...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456666666777777777777777766653 232 3456666666677777777777777666654 4456666667
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 011323 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (488)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (488)
..++.+.|++++|++.|++..+.... +...+..+..+|...|++++|++.|++..+.. +-+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 77777777777777777766665433 55666666667777777777777777666654 33456666666677777777
Q ss_pred HHHHHHHHHHHh
Q 011323 356 QKALELYEHMKS 367 (488)
Q Consensus 356 ~~a~~~~~~~~~ 367 (488)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777666666553
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=7.5e-10 Score=93.71 Aligned_cols=195 Identities=12% Similarity=0.038 Sum_probs=140.3
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011323 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (488)
Q Consensus 195 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (488)
.|+..+......+...|++++|...|++.....+ .++...+..+..++...|++++|...++...+.. +.+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 4567888888888999999999999998877421 1455666668888889999999999999888765 456778888
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHH
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDE-------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSL 345 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 345 (488)
+..++...|++++|...+++..+..+. +. ..+..+...+...|++++|+..+++..+.. +. +...+..+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l 159 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHH
Confidence 899999999999999999988876443 44 457777778888899999999999988764 23 35677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..+|...| ...++++...+ ..+...|..... ...+.+++|+..+++..+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 77775443 34455555443 233444433332 223456677777777665
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=8.3e-11 Score=103.12 Aligned_cols=230 Identities=11% Similarity=-0.009 Sum_probs=148.0
Q ss_pred HccCCHHHHHHHHHHHhhCC-----CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 011323 208 GQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------NI-KGTPEVYTIA 275 (488)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 275 (488)
...|++++|+..+++..... ...+....++..+...+...|++++|...++.+.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34566666666665554310 011123456777888889999999999999887654 11 2235678888
Q ss_pred HHHHHccCChHHHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCccHHH
Q 011323 276 INCCSQTGDWEFACSVYDDMTKK-----GV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ------G-ISVGIIS 341 (488)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 341 (488)
...+...|++++|...+.+.... +. +....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999887654 11 123567778888889999999999999888764 1 1223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH---hCC--CCCC
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSI-------KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMK---SLG--LCPN 408 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~--~~p~ 408 (488)
+..+...|...|++++|...++++.+. ...+ ....|..+...+...+....+..+..... ..+ .+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888888899999999999999888652 1122 22334334434443333333222211111 111 1223
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 409 TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..++..+...+...|++++|..+++++.+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55678888899999999999999988765
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=2.9e-10 Score=99.60 Aligned_cols=87 Identities=8% Similarity=-0.052 Sum_probs=47.4
Q ss_pred HcCCHhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHhHHHHHH
Q 011323 139 KSGKVDAMFEVFHEMVNA-------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NV-KPDRVVFNALI 204 (488)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll 204 (488)
..|++++|.+.+++..+. ..+....++..+...|...|++++|...+++.... +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445566666555554431 11123445666666666777777777776666543 11 11234455555
Q ss_pred HHHHccCCHHHHHHHHHHHhh
Q 011323 205 TACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~ 225 (488)
..+...|++++|...+++...
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 666666666666666665543
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=4.5e-09 Score=90.70 Aligned_cols=251 Identities=11% Similarity=0.063 Sum_probs=154.8
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhc
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (488)
+..+..+....-.|.+..+++-. .+...... ......+.+.+...|+.... ....|.......+...+ ..
T Consensus 14 ~~~lf~ikn~fy~G~yq~~i~e~---~~~~~~~~-~~~~~~~~Rs~iAlg~~~~~-----~~~~~~~~a~~~la~~~-~~ 83 (310)
T 3mv2_B 14 PMDYFNIKQNYYTGNFVQCLQEI---EKFSKVTD-NTLLFYKAKTLLALGQYQSQ-----DPTSKLGKVLDLYVQFL-DT 83 (310)
T ss_dssp -CCTHHHHHHHTTTCHHHHTHHH---HTSSCCCC-HHHHHHHHHHHHHTTCCCCC-----CSSSTTHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHHHhhHHHHHHHHH---HhcCccch-HHHHHHHHHHHHHcCCCccC-----CCCCHHHHHHHHHHHHh-cc
Confidence 34566778888899999998833 33221111 22333344555555544321 12234443444444433 22
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGA 184 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (488)
+ |+..|++....+ +++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.
T Consensus 84 ~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 84 K----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp T----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 667777666554 45566666777888888888888888888766542 13566777888888888888888888
Q ss_pred HHHHHhCCCCC-----CHhHHHHHHHHH--HccC--CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 011323 185 YGIMRSKNVKP-----DRVVFNALITAC--GQSG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (488)
Q Consensus 185 ~~~~~~~~~~~-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 255 (488)
+++|.+. .| +..+...++.++ ...| +..+|..+|+++... .|+..+...++.++.+.|++++|.+
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 8888765 45 245555555552 2233 788888888887653 2332233344447778888888888
Q ss_pred HHHHHHhcC---------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011323 256 VYKMIHKYN---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (488)
Q Consensus 256 ~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 299 (488)
.++.+.+.. -+.++.++..+|......|+ .|.+++.++.+..
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 887665431 13456666555555555665 6777777777754
No 88
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.15 E-value=1.3e-09 Score=87.90 Aligned_cols=164 Identities=11% Similarity=0.136 Sum_probs=112.2
Q ss_pred CCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHHHHHH
Q 011323 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLMS 100 (488)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~ 100 (488)
......+.....+.+.|++++|+..|+++.+.+ |.+...+..++.++...|++++|+..|+++.. |+...+.....
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~ 81 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAK 81 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHH
Confidence 334556677777888999999999999888776 77778888888888888889999998888753 34443332221
Q ss_pred H-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 011323 101 V-CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 101 ~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 178 (488)
. +...+...+|+..++...+.. +.+...+..+..++...|++++|.+.|+++.+....+ +...+..+...+...|+.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 2 122233345677777776653 4456777777777778888888888887777653222 245677777777777777
Q ss_pred HHHHHHHHHHH
Q 011323 179 AKAFGAYGIMR 189 (488)
Q Consensus 179 ~~a~~~~~~~~ 189 (488)
++|...|++..
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777777654
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=2.6e-09 Score=94.02 Aligned_cols=129 Identities=10% Similarity=0.014 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC---c--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 011323 306 FLSALIDFAGHA-GKVEAAFEILQEAKNQGIS---V--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----- 374 (488)
Q Consensus 306 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 374 (488)
++..+..+|... |++++|+..+++..+.... + ...++..+...+.+.|++++|...|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 344445555553 5555555555554432100 0 0234555666666666666666666666554321111
Q ss_pred -HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHh--hcCCHHHHHHHHHHHH
Q 011323 375 -STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT------ITYSILLVACE--RKDDVEVGLMLLSQAK 436 (488)
Q Consensus 375 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 436 (488)
..|..+..++...|++++|...+++..+. .|+. ..+..++.++. ..+++++|+..|+++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 13455555666666666666666665542 2321 12333444443 3455666666665544
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=2.1e-09 Score=89.40 Aligned_cols=191 Identities=9% Similarity=-0.011 Sum_probs=125.1
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcC
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (488)
..+.....+++.|++++|+..|++..+.+ |.+...+.... ..............+..++...|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~---------------~~~~~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTN---------------VDKNSEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHH---------------SCTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhh---------------hcchhhhhHHHHHHHHHHHHHCC
Confidence 34455667779999999999999999876 55554443210 00001112334455777788888
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHH
Q 011323 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGA 184 (488)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~ 184 (488)
++++|+..|+...+.. +.+...+..+..++...|++++|.+.|++..+.. +.+..++..+...|...|+ .+.+...
T Consensus 69 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888888888764 5567788888888888888888888888888764 3356778778777765543 3445555
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHH
Q 011323 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (488)
++.... ..|....+.....++...|++++|...|++.... .|+......+.+
T Consensus 147 ~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l----~P~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR----FPSTEAQKTLDK 198 (208)
T ss_dssp HC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT----SCCHHHHHHHHH
T ss_pred HHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCHHHHHHHHH
Confidence 555542 1233333444555666678888888888888753 566555555444
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.12 E-value=1.2e-07 Score=89.48 Aligned_cols=363 Identities=9% Similarity=0.011 Sum_probs=173.1
Q ss_pred cC-CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhcCC-hhHHHH
Q 011323 38 QG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (488)
Q Consensus 38 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~a~~ 113 (488)
+| +++.|+.+|+.+...- |. |+.+.+..+|++.. -|+...|...+....+.+. .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3666666666665532 21 45677777777655 2566777766666555542 345556
Q ss_pred HHHHHHHc-CC-CCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------------
Q 011323 114 VLRLVQEA-GL-KADCKLYTTLITTCA----KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK------------- 174 (488)
Q Consensus 114 ~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------- 174 (488)
+|+..... |. +.+...|...+..+. ..++.+.+.++|++.+......-...|......-..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 66665543 32 235566666665543 235566777777777653211111222222111100
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc--CC-----HHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS--GA-----VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (488)
.+.+..|..+++.+...--..+...|...+..-... |- .+.+..+|+++... .+.+...|...+..+.+.
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHc
Confidence 112223333333333210001233444444332211 00 23455666666553 122234555566666677
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHH
Q 011323 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---------VIP---DEVFLSALIDFAG 315 (488)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~ 315 (488)
|+++.|..+++..... +.+...+.. |......++. ++.+.+.- ..+ ....|...+....
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 7777777777777665 333222221 1111111111 22221110 000 1133444455555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
+.++.+.|..+|... +. ...+...|......-...+ +.+.|..+|+...+.. +.++..|...+....+.|+.+.|.
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 566677777777766 22 1223333432222222222 5777777777666532 223444555555556667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 375 ~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777652 2455566666655666777777776666553
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=5.8e-09 Score=79.68 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444555555566666666666555443 2344555555566666666666666666655443 3345555566666666
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665532 33455566666666666666666666666654
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=7.9e-09 Score=78.91 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 173 (488)
.|..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666777777777777777776654 3456666667777777777777777777776653 335566666777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
..|++++|.+.++++.... +.+...+..+...+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777766553 33455666666677777777777777766654
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=1.2e-09 Score=107.93 Aligned_cols=170 Identities=8% Similarity=-0.035 Sum_probs=111.0
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHh
Q 011323 36 IRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (488)
Q Consensus 36 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 104 (488)
...|++++|++.+++.. +.. |.+...+..++..+...|++++|++.|+++. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56777778887777776 443 5556666666677777777777777776654 3456677777777777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (488)
.|++++|++.|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776654 3456667777777777777777 77777776653 33556677777777777777777777
Q ss_pred HHHHHhCCCCCC-HhHHHHHHHHHHccCC
Q 011323 185 YGIMRSKNVKPD-RVVFNALITACGQSGA 212 (488)
Q Consensus 185 ~~~~~~~~~~~~-~~~~~~ll~~~~~~g~ 212 (488)
|++..+. .|+ ...+..+..++...+.
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7766654 333 4555555555544443
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=1.2e-08 Score=88.29 Aligned_cols=182 Identities=10% Similarity=-0.005 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCC-HHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD-EVFLSAL 310 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~~~l 310 (488)
.+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|...|++..+..+ .|. ...+..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 44445555666666666666666666543 223 45556666666666666666666666665422 111 3344455
Q ss_pred HHHHHh--------cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 311 IDFAGH--------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (488)
Q Consensus 311 ~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 382 (488)
..++.. .|++++|...|+++.+... .+......+.. +..+.. .....+..+..
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~--------------~~~~~~----~~~~~~~~la~ 156 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQK--------------IRELRA----KLARKQYEAAR 156 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHH--------------HHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHH--------------HHHHHH----HHHHHHHHHHH
Confidence 555555 5666666666666555431 11111111100 000000 00111356677
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHcC
Q 011323 383 ALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERK----------DDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~ 439 (488)
.|.+.|++++|+..|+++.+. .|+ ...+..+..++... |++++|...++++.+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 888999999999999998764 233 45677777777765 88899999999988753
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=1.6e-08 Score=87.33 Aligned_cols=248 Identities=11% Similarity=0.004 Sum_probs=156.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (488)
++-..-.|.+..++.-...+.. .........+.+++...|++... ..-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~-----------~~~~~~~~a~~~la-~~~~~~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ-----------DPTSKLGKVLDLYV-QFLDTK 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC-----------CSSSTTHHHHHHHH-HHHTTT
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC-----------CCCCHHHHHHHHHH-HHhccc
Confidence 3444557888888773332221 22233334456778777776531 01123322333333 333322
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 327 (488)
+...|+.....+ .++...+..+...+...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.+
T Consensus 85 ----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 667777766654 45566666788888888999999999888877654 225677778888888899999999999
Q ss_pred HHHHHCCCCc-----cHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 011323 328 QEAKNQGISV-----GIISYSSLMGAC--SNAK--NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (488)
Q Consensus 328 ~~~~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 398 (488)
+.|.+. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 888775 34 245555555552 2233 788889999888654 3553333444447888899999998888
Q ss_pred HHHhC-----CC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH
Q 011323 399 DMKSL-----GL----CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (488)
Q Consensus 399 ~~~~~-----~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 444 (488)
.+.+. .. +.++.++..++......|+ +|.++++++.+. .|+.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 76542 00 3356666566666666676 788888888874 3554
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=6.2e-09 Score=90.06 Aligned_cols=101 Identities=10% Similarity=-0.009 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CCHhH
Q 011323 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-K-PDRVV 199 (488)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~ 199 (488)
.+...+..+...+.+.|++++|.+.|+.+.+.. +.+ ...+..+..+|...|++++|...|++..+... . .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566666666777777777777777776652 112 45666666777777777777777777765421 1 11334
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHHhhC
Q 011323 200 FNALITACGQ--------SGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 200 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~ 226 (488)
+..+..++.. .|++++|...|+++...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 5555566666 66666666666666553
No 98
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=3.9e-09 Score=92.94 Aligned_cols=132 Identities=12% Similarity=0.026 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC-CC----H
Q 011323 306 FLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLK-PT----V 374 (488)
Q Consensus 306 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~-~~----~ 374 (488)
++..+..+|...|++++|+..+++..+. |-. ....+++.+..+|... |++++|...|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4445555555555555555555544432 100 0134666777777775 8888888888777643110 01 3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT------ITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.++..+...+.+.|++++|+..+++..+....... ..|..+..++...|++++|...+++..+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45777777888888888888888887764221111 1456667777788888888888887765
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.09 E-value=5.2e-09 Score=86.96 Aligned_cols=136 Identities=10% Similarity=-0.047 Sum_probs=88.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 011323 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (488)
Q Consensus 310 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 389 (488)
+..++.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|+++.+.. +.+...|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 6677778888888888888877764 4467777888888888888888888888887765 4566777777777655443
Q ss_pred --hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011323 390 --LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (488)
Q Consensus 390 --~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 451 (488)
.+.+...++.... ..|....+.....++...|++++|+..|+++.+ ..|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 3344455554432 222233344455566667888888888888776 556655444433
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.09 E-value=4.9e-09 Score=91.92 Aligned_cols=158 Identities=11% Similarity=0.098 Sum_probs=82.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHHHHH-HHHHh
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLM-SVCAS 104 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~-~~~~~ 104 (488)
.+.....+.+.|++++|++.|+++.+.. |.+...+..++.++...|++++|...++++.. |+........ ..+..
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence 3344444455666666666666665554 55555555555566666666666666665542 3332222211 22444
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFG 183 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 183 (488)
.++.++|+..++...+.. +.+...+..+...+...|++++|.+.|.++.+.... .+...+..++..+...|+.++|..
T Consensus 198 ~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 455555555555555443 344555555555666666666666666655554211 113455555555555555555555
Q ss_pred HHHHH
Q 011323 184 AYGIM 188 (488)
Q Consensus 184 ~~~~~ 188 (488)
.|++.
T Consensus 277 ~~r~a 281 (287)
T 3qou_A 277 XYRRQ 281 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.06 E-value=6.2e-09 Score=81.31 Aligned_cols=143 Identities=8% Similarity=-0.060 Sum_probs=102.0
Q ss_pred HHHHHhhhHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 011323 67 FFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (488)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (488)
++.++.+.|++++|+..++...+.+ ...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 4556677788888888888766433 3355667778888888888888888888764 55778888888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
++|...|++..+.. +-+...|..+...|.+.|++++|.+. +++..+.. +-++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 88888888888763 33577888888888888887765554 46666553 3356666666666655553
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=7.1e-08 Score=80.27 Aligned_cols=178 Identities=14% Similarity=0.070 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 011323 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----KVEAAFEIL 327 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 327 (488)
+|.+.|++..+.+ ++..+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666665543 55677777777777778888888887777764 45566666666666 5 788888888
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHc----CCChhHHHHHHH
Q 011323 328 QEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCD----GDQLPKTMEVLS 398 (488)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 398 (488)
++..+.+ ++..+..+...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8877765 56667777777766 77888888888887766511 125677777777777 777888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhc-C-----CHHHHHHHHHHHHHcCCC
Q 011323 399 DMKSLGLCPNTITYSILLVACERK-D-----DVEVGLMLLSQAKEDGVI 441 (488)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 441 (488)
+..+. +.+...+..|...|... | ++++|..+|++..+.|..
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88764 23444566666666543 2 788888888888777643
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=1.3e-08 Score=100.54 Aligned_cols=173 Identities=12% Similarity=0.023 Sum_probs=118.0
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011323 245 ANAGQVDRAREVYKMIH--------KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (488)
...|++++|.+.++... +.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56677777777777776 332 445566777777777778888887777777765443 66677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 011323 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 396 (488)
.|++++|...|++..+.. +.+...+..+..++.+.|++++ ...|+++.+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888888777777654 3356667777777777777777 77777777654 44566777777777777888888877
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHhhcCC
Q 011323 397 LSDMKSLGLCPN-TITYSILLVACERKDD 424 (488)
Q Consensus 397 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 424 (488)
|++..+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7777653 444 4556666666655443
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.00 E-value=3e-09 Score=83.12 Aligned_cols=137 Identities=9% Similarity=0.034 Sum_probs=115.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
.+|++++|++.++...... |.+...+..++.++...|++++|++.|+++. +.+..+|..+..++...|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 6789999999999988765 7777888889999999999999999999864 5678899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011323 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV-FHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (488)
.|+...+.. +-+..++..+..++.+.|+.+++.+. +++..+.. +-+..+|......+...|+
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999875 55788999999999999999876665 57777763 3467778877777776664
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.97 E-value=9.4e-08 Score=80.44 Aligned_cols=184 Identities=9% Similarity=-0.010 Sum_probs=103.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-CH-HHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DE-VFLSALI 311 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~l~ 311 (488)
.+..+...+...|++++|...|+.+.+..... ....+..+..++.+.|++++|...|+++.+..+.. .. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 44455667778888888888888877654211 13567777788888888888888888877654331 11 2333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-------------- 377 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------- 377 (488)
.++...|.. .+ ..+..+...+...|++++|...|+++.+.. +.+...+
T Consensus 86 ~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 86 LTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHH
Confidence 444332110 00 001111222233455555555555555432 1111111
Q ss_pred ---HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 011323 378 ---NALITALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 378 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
..+...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 23455667778888888888877763 232 2456677777778888888888887776653
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=2.5e-08 Score=87.42 Aligned_cols=162 Identities=10% Similarity=0.007 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH-HH
Q 011323 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL-IT 205 (488)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~ 205 (488)
...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++.... .|+....... ..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 3344444444455555555555555544432 223444444555555555555555555544433 2222221111 11
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCC
Q 011323 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQTGD 284 (488)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 284 (488)
.+...++.++|...+++..... +.+...+..+...+...|++++|...+..+.+..... +...+..++..+...|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2333444444444444444321 1122344444445555555555555555554443111 13445555555555555
Q ss_pred hHHHHHHHHH
Q 011323 285 WEFACSVYDD 294 (488)
Q Consensus 285 ~~~a~~~~~~ 294 (488)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 5555554444
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=1.3e-08 Score=81.96 Aligned_cols=160 Identities=12% Similarity=0.096 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AG 315 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 315 (488)
+......+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++...... +.......... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4445555666666676666666655543 44556666666666666666666666666554332 33222211111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
..++...|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1112223445555554432 2234555555555555555555555555555443211 1334555555555555555555
Q ss_pred HHHHHH
Q 011323 395 EVLSDM 400 (488)
Q Consensus 395 ~~~~~~ 400 (488)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.96 E-value=6.8e-08 Score=81.31 Aligned_cols=183 Identities=9% Similarity=-0.023 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-A-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYG 166 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 166 (488)
..+..+...+...|++++|+..|+.+.+.... | ....+..+..++.+.|++++|++.|+++.+.. |+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 34444555666677777777777777654311 1 12456666777777777777777777776652 221 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 011323 167 ALIDGCAK------------------AGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (488)
Q Consensus 167 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 227 (488)
.+..++.. .|++++|...|+++.+. .|+ ...+...... ..+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHHH--
Confidence 33333333 45566666666666654 222 2222111100 000000000
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011323 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (488)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 300 (488)
....+...+.+.|++++|...|+.+.+.. +.++ ..+..+..++.+.|++++|.+.++.+...++
T Consensus 149 --------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 149 --------YEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --------HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 11345677888899999999999888764 3333 5677888899999999999999988887654
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.96 E-value=1.3e-06 Score=76.14 Aligned_cols=221 Identities=8% Similarity=-0.017 Sum_probs=119.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----AKA--- 175 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 175 (488)
....++|+++++.+...+ +-+...|+.--.++...| +++++++.++.++... +-+..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 334457777777777654 445556666666666666 7777777777776653 23445555444433 333
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH--HHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCC----
Q 011323 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ---- 249 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 249 (488)
+++++++..++.+.+.. +-+..+|+.-.-.+.+.|.++ ++++.++.+.... ..|..+|+....++.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccchh
Confidence 56667777777666553 345566665555555556555 6666666665531 2233444444444444443
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 250 --VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAF 324 (488)
Q Consensus 250 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 324 (488)
++++++.++.+.... +.+...++.....+.+.|+... +..+..++...+ -..+...+..+..++.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 555555555555544 4455555555555555554322 333333333221 1124445555555555555555555
Q ss_pred HHHHHHHH
Q 011323 325 EILQEAKN 332 (488)
Q Consensus 325 ~~~~~~~~ 332 (488)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=1.4e-08 Score=98.60 Aligned_cols=151 Identities=9% Similarity=-0.069 Sum_probs=114.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHH
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 114 (488)
.|++++|++.|+++.+.. |.+...+..++..+...|++++|.+.|+++. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 578999999999998876 7778888888999999999999999998764 45677888899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 011323 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---GQVAKAFGAYGIMRSK 191 (488)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 191 (488)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 5567889999999999999999999999988874 34678888999999999 9999999999998876
Q ss_pred C
Q 011323 192 N 192 (488)
Q Consensus 192 ~ 192 (488)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=1.2e-06 Score=76.37 Aligned_cols=215 Identities=7% Similarity=-0.005 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC--CHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHH----Hhc---C
Q 011323 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSG--AVDRAFDVLAEMNAEVHPVDPD-HITIGALMKAC----ANA---G 248 (488)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~----~~~---~ 248 (488)
++|+++++.++..+ +-+...|+.--.++...| +++++++.++.+... .|. ..+|+.-..++ ... +
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----NEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----CcccHHHHHHHHHHHHHHHHhccccC
Confidence 45556555555543 223444555555555555 566666666655543 222 22333332222 233 4
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------H
Q 011323 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE--FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK------V 320 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 320 (488)
++++++.+++.+.+.. +.+..+++.-...+.+.|.++ ++++.++++.+..+. |...|+.-.....+.+. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 5566666666666554 445555555555555555555 566666666555443 44555444444444433 4
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ-KALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
+++++.+..+.... +-|...|+.+...+.+.|+.. .+..+..++.+.+ -..+...+..+...|.+.|+.++|++++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 44444444444433 224444444444444444322 2223333332211 0123344444444444444444444444
Q ss_pred HHHH
Q 011323 398 SDMK 401 (488)
Q Consensus 398 ~~~~ 401 (488)
+.+.
T Consensus 282 ~~l~ 285 (306)
T 3dra_A 282 DLLK 285 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.95 E-value=2.1e-07 Score=77.43 Aligned_cols=174 Identities=14% Similarity=-0.024 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAY 185 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 185 (488)
+|++.|+...+.| +...+..+...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45555556666666666666666666665543 44555555555555 4 566666666
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCC---cchHHHHHHHHHh----cCCHHHHH
Q 011323 186 GIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACAN----AGQVDRAR 254 (488)
Q Consensus 186 ~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~a~ 254 (488)
++..+.| +...+..+...|.. .+++++|++.|++.... .++ ...+..+...|.. .+++++|.
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 6665543 44455555555554 55666666666665543 111 3344455555555 45556666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcc------CChHHHHHHHHHHHhCC
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQT------GDWEFACSVYDDMTKKG 299 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~ 299 (488)
.+|++..+. +.++..+..+...|... .++++|...|+...+.|
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666555543 12223444444444332 14555555555554443
No 113
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.94 E-value=4.2e-06 Score=78.97 Aligned_cols=343 Identities=11% Similarity=0.010 Sum_probs=211.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHH----hcCCH
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNA-GI-EPNVHTYGALIDGCA----KAGQV 178 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~ 178 (488)
|+++.+..+|+..... .|+...|...+....+.++ .+....+|+..... |. ..+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999874 5799999999988888774 45577788877653 53 347788888887654 34678
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc-------------cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH
Q 011323 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQ-------------SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (488)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (488)
+.+.++|++........-...|......-.. .+.+..|..+++.+...... .+...|...+..-.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~--~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG--WSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHh
Confidence 8999999999874321112233222221111 11233344444444321000 12224444333322
Q ss_pred hc--CC-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011323 246 NA--GQ-----VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (488)
Q Consensus 246 ~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 318 (488)
.. +- .+.+..+|+.+.... +.++..|...+..+.+.|+++.|..++++.... + .+...+. .|....
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~ 256 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVM 256 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHT
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhc
Confidence 21 11 345677888888764 667888999999999999999999999999887 2 2332222 222221
Q ss_pred CHHHHHHHHHHHHHCC------------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 319 KVEAAFEILQEAKNQG------------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 319 ~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+.++. ++.+.+.- .......|...+..+.+.++.+.|..+|++. ... ..+...|......-..
T Consensus 257 e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 257 DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY 331 (493)
T ss_dssp TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH
T ss_pred chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH
Confidence 11111 22222110 0112345666777777788999999999998 322 2344555433322222
Q ss_pred -CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHH
Q 011323 387 -GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKART 463 (488)
Q Consensus 387 -~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~ 463 (488)
.++.+.|..+|+...+. .+-++..+...+.-....|+.+.|..+|+++. .....|...+..-.. ..+.+..
T Consensus 332 ~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 23699999999998874 23345566777887788999999999999873 246677777754333 6777877
Q ss_pred HHHHhhh
Q 011323 464 LNEHVLS 470 (488)
Q Consensus 464 ~~~~~~~ 470 (488)
++++...
T Consensus 406 v~~~~~~ 412 (493)
T 2uy1_A 406 LVDQKMD 412 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=3.2e-08 Score=96.13 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=104.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011323 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (488)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 289 (488)
.|++++|.+.+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467788888888876531 2234567777788888888888888888887765 556778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 011323 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 366 (488)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 366 (488)
+.+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888887776443 66778888888888888888888888887764 34567777888888888 88888888888877
Q ss_pred hCC
Q 011323 367 SIK 369 (488)
Q Consensus 367 ~~~ 369 (488)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 654
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.88 E-value=3.1e-07 Score=76.41 Aligned_cols=128 Identities=15% Similarity=-0.012 Sum_probs=108.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 011323 63 YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142 (488)
Q Consensus 63 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (488)
.+..++..+...|++++|++.|+++.+++..++..+...+...|++++|++.++...+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344566667778999999999999888888899999999999999999999999988775 5677889999999999999
Q ss_pred HhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 143 VDAMFEVFHEMVNAGIEPN----------------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
+++|.+.|+...+.. +.+ ...+..+..+|...|++++|...|++.....
T Consensus 87 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999998753 222 2678888999999999999999999998763
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=9e-08 Score=84.85 Aligned_cols=183 Identities=14% Similarity=0.060 Sum_probs=104.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 011323 243 ACANAGQVDRAREVYKMIHKYNIK-----GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALID 312 (488)
Q Consensus 243 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 312 (488)
.|...|++++|...|......... ....+|+.+...|.+.|++++|...+++..+. |-.. ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555544332100 01235556666666677777777766664432 1110 1245566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC---C--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGI---S--VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALIT 382 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~ 382 (488)
+|.. |++++|+..+++..+... . ....++..+...|.+.|++++|...|++..+. +..+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7766 788888777777654310 0 11456777788888888888888888877642 11111 225556666
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhhcCCHHHHHH
Q 011323 383 ALCDGDQLPKTMEVLSDMKSLGLCPN------TITYSILLVACERKDDVEVGLM 430 (488)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~ 430 (488)
++...|++++|...|++.. . .|+ ......++.++ ..|+.+.+..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7777788888888888877 3 232 12234444544 4666655555
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=4.9e-08 Score=86.55 Aligned_cols=228 Identities=11% Similarity=-0.003 Sum_probs=127.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 116 (488)
..|++++|.+++++..+.. +.. ++...+++++|...|.++ ...|...|++++|.+.|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 4678888888888777543 110 011124555565555442 445666677777777776
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 117 LVQEAGL---KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPN--VHTYGALIDGCAKAGQVAKAFGAY 185 (488)
Q Consensus 117 ~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~ 185 (488)
+..+... .+ -..+|+.+..+|...|++++|.+.|++..+. | .+. ..+++.+...|.. |++++|+..|
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 6543210 11 1346666777777777777777777665432 1 111 3456666667766 7777777777
Q ss_pred HHHHhC----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC--CCC-cchHHHHHHHHHhcCCHHHHHHHH
Q 011323 186 GIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV--DPD-HITIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 186 ~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
++.... +-.+ ...++..+...+...|++++|+..|++........ .+. ...+..+..++...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 766543 1000 13456667777777777777777777665421111 111 124555566666677777777777
Q ss_pred HHHHhcCCC--CC--HHHHHHHHHHHHccCChHHHHH
Q 011323 258 KMIHKYNIK--GT--PEVYTIAINCCSQTGDWEFACS 290 (488)
Q Consensus 258 ~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~ 290 (488)
+... .... .. ......++..+ ..|+.+.+..
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7766 3211 11 11233444444 4566655555
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.81 E-value=4e-07 Score=75.73 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=71.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (488)
+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445555666666666666665542 3455566666666666666666666666665543 3345556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 352 AKNWQKALELYEHMKSIKLKPTV----------------STMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
.|++++|...|++..+.. +.+. ..+..+..+|...|++++|.+.+++..+
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666666665543 1111 4455555555555666666666555554
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=2.2e-07 Score=69.88 Aligned_cols=96 Identities=6% Similarity=-0.037 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
..+......|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345555666666666666666666666544 3455666666666666666666666666666532 33455666666666
Q ss_pred hhcCCHHHHHHHHHHHHH
Q 011323 420 ERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~ 437 (488)
...|++++|++.|+++.+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666666666666665
No 120
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=1.4e-05 Score=70.42 Aligned_cols=182 Identities=6% Similarity=-0.023 Sum_probs=114.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
+.+.....+....++|+++++.+...+ +-+..+|+.--..+...| ++++++++++.++... +-+..+|+.-...+..
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333334455556678888888888765 456667777777777777 4888888888888764 3467777776666666
Q ss_pred c-C-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH--------HHHHHHHHHhhCCCCCCCCcchHHHHHHHH
Q 011323 175 A-G-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--------RAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (488)
Q Consensus 175 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 244 (488)
. + +++++++.++++.+.. +-+..+|+.-.-.+.+.|.++ ++++.++++.... ..|..+|+-...++
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNNSAWGWRWYLR 211 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 5 6 7788888888887664 446666665544444444443 6666666666531 23444566555555
Q ss_pred HhcCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 245 ANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 245 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
.+.+. ++++++.++...... +.|...++.+-..+.+.|.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 55554 566666666666554 4556666555555544443
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.73 E-value=6.4e-07 Score=71.04 Aligned_cols=126 Identities=10% Similarity=-0.032 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..+...+...|++++|...+....+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4444455555666666666666555543 2345555556666666666666666666655443 3345555556666666
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHH--HHHHhhcCCHHHHHHHHHHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSIL--LVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 435 (488)
.|++++|...+++..+.. +.+...+..+ +..+...|++++|...++..
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666655431 2233333222 22244555666665555543
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.72 E-value=1.9e-06 Score=75.65 Aligned_cols=159 Identities=8% Similarity=-0.004 Sum_probs=77.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHccCChHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNIKGTPE------VYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSA 309 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 309 (488)
+..+...|++++|...++...... +.++. .+..+...+...+++++|...+++....... ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 445566667777777666665532 11111 2223444555555666666666665552111 11 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 011323 310 LIDFAGHAGKVEAAFEILQEAKN----Q-GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMN 378 (488)
Q Consensus 310 l~~~~~~~g~~~~a~~~~~~~~~----~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 378 (488)
+..+|...|++++|...++++.+ . +.. ....++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 55556666666666666655542 1 111 11224555555555555555555555544321 11111 34444
Q ss_pred HHHHHHHcCCC-hhHHHHHHHHH
Q 011323 379 ALITALCDGDQ-LPKTMEVLSDM 400 (488)
Q Consensus 379 ~l~~~~~~~~~-~~~a~~~~~~~ 400 (488)
.+..+|.+.|+ +++|.+.+++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 55555555552 35555555544
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.72 E-value=7.9e-07 Score=66.77 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345556666777777777777777766654 4466677777777777777777777777776653 33566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 011323 173 AKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~ 191 (488)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777777665
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=9.4e-07 Score=66.00 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4456666666667777777777777666553 3455666666677777777777777777766553 3355666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 207 (488)
+...|++++|...++++.... +.+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 777777777777776666543 22344444443333
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.71 E-value=1e-06 Score=69.81 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..+..+...+...|++++|...++...+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566667777778888888877777654 4466777777777777788888888777777653 33566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHH--HHHHHHccCCHHHHHHHHHHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNA--LITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~g~~~~a~~~~~~~ 223 (488)
...|++++|...|++..... +.+...+.. .+..+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77778877777777776653 223444422 333355667777777766654
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=2.7e-06 Score=74.77 Aligned_cols=162 Identities=6% Similarity=-0.064 Sum_probs=101.4
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCcc----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHH
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTI 274 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 274 (488)
+..+...|++++|...+++..... ...|+.. .+..+...+...+++++|...++.+...... ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 455566677777777776665531 1122211 2223444555666777777777776653211 11 235777
Q ss_pred HHHHHHccCChHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-ccHHHHH
Q 011323 275 AINCCSQTGDWEFACSVYDDMTK----K-GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGIISYS 343 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~ 343 (488)
+...|...|++++|...+++..+ . +..+ ...++..+...|.+.|++++|...+++..+. +.. .-..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777778888888877777663 1 1111 1236677777888888888888888876642 211 2267788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHH
Q 011323 344 SLMGACSNAKN-WQKALELYEHMK 366 (488)
Q Consensus 344 ~l~~~~~~~g~-~~~a~~~~~~~~ 366 (488)
.+..+|.+.|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88888888884 688888888765
No 127
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.70 E-value=1.4e-05 Score=70.14 Aligned_cols=184 Identities=8% Similarity=0.030 Sum_probs=128.5
Q ss_pred hcCCHH-HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 011323 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (488)
Q Consensus 37 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~ 102 (488)
+.|+++ +|+++++.++..+ |.+......-..+....+. +++++.+++.+. +.+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 567776 7999999999887 6665555444444444333 677888877664 56777888777777
Q ss_pred HhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----
Q 011323 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (488)
Q Consensus 103 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 175 (488)
...+ .+++++++++.+.+.. +.|..+|+.-..++...|. ++++++.++.+++.. +-|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 7777 4788999999888875 5677888877777778887 588888888888775 44777787766665554
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc-----------CCHHHHHHHHHHHhh
Q 011323 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-----------GAVDRAFDVLAEMNA 225 (488)
Q Consensus 176 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~ 225 (488)
+.++++++.+.+..... +-|...|+.+-..+.+. +.++++++.++++..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 34677888888877664 45677776555444443 235566666666654
No 128
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.69 E-value=3.3e-07 Score=71.09 Aligned_cols=103 Identities=8% Similarity=-0.021 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...+..+...+.+.|++++|+..|+...+.. |.+...|..+..++...|++++|++.|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44466677778888888888888888888765 5577888888888888888888888888888764 335778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPDR 197 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (488)
+|...|++++|...|++..+. .|+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 888888888888888888876 3444
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.67 E-value=3.5e-07 Score=73.61 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=82.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCh--hH
Q 011323 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 392 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 392 (488)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4566777777777766654 3456777777777777888888888777776554 3456666677777 6677777 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888777642 334667777777788888888888888877764
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=2.6e-07 Score=71.72 Aligned_cols=99 Identities=9% Similarity=-0.082 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
+...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..+++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 45566677777888888888888888877654 4567777778888888888888888888877642 335677777888
Q ss_pred HHhhcCCHHHHHHHHHHHHHc
Q 011323 418 ACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~ 438 (488)
++...|++++|...|+++.+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888887764
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.67 E-value=2.3e-05 Score=69.17 Aligned_cols=185 Identities=10% Similarity=-0.056 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH------
Q 011323 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-G-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE------ 321 (488)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------ 321 (488)
+++++..++.+.... +.+..+++.-...+.+. + ++++++++++++.+.... +..+|..-..++.+.|.++
T Consensus 105 l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhh
Confidence 444444444444433 23333443333333332 3 444444444444443332 3333333333333222222
Q ss_pred --HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh--
Q 011323 322 --AAFEILQEAKNQGISVGIISYSSLMGACSNAKN-------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-- 390 (488)
Q Consensus 322 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 390 (488)
++++.+.++.+.. +-+...|+.....+.+.++ ++++.+.+++++... +-|...|+.+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcc
Confidence 5555555555543 2244555555545544443 455555555555443 34555555544444444432
Q ss_pred ------------------hHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 391 ------------------PKTMEVLSDMKSLG-----LCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 391 ------------------~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.+...+..++...+ -.++...+..++..|...|+.++|.++++.+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 12222222222211 1345666777777777777777787777776543
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.66 E-value=2e-07 Score=75.10 Aligned_cols=119 Identities=8% Similarity=0.075 Sum_probs=79.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHH-HHhcCCh--
Q 011323 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSV-CASSKDS-- 108 (488)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~-- 108 (488)
+...|++++|+..+++..+.. |.+...+..++..+...|++++|+..|+++. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 456788888888888888776 6666667777777777777777777776653 3455666666666 5666776
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
++|+..++...+.. +.+...+..+..++...|++++|.+.|+...+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777776653 345566666777777777777777777776665
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=7.3e-06 Score=71.92 Aligned_cols=125 Identities=6% Similarity=-0.017 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHhCCC---CCC--HHHHH
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---IPD--EVFLS 308 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~ 308 (488)
.+..+...|++++|.+.+....+.... .. ..+..+...+...|++++|...+.+..+... .+. ..++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 334444555555555555544433211 11 1122233334444455555555554443211 111 22444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---CC-CCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 309 ALIDFAGHAGKVEAAFEILQEAKN---QG-ISV--GIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 309 ~l~~~~~~~g~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
.+...|...|++++|...+++..+ .. ..+ ...++..+...|...|++++|...+++.
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 444444455555555555544431 10 000 1134444444445555555555544444
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.65 E-value=4e-06 Score=73.62 Aligned_cols=168 Identities=10% Similarity=0.008 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---Ccc--H
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-----VFLSALIDFAGHAGKVEAAFEILQEAKNQGI---SVG--I 339 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~ 339 (488)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+.+..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677888999999999999988775433211 2234455667888999999999999875421 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---CC-CCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-C
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKS---IK-LKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-N 408 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~ 408 (488)
.+++.+...|...|++++|...+++..+ .. ..+ ...++..+...|...|++++|+..+++..+. +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5889999999999999999999998862 21 111 1257888999999999999999999987642 1111 1
Q ss_pred HHHHHHHHHHHhhcCCHHHH-HHHHHHHHH
Q 011323 409 TITYSILLVACERKDDVEVG-LMLLSQAKE 437 (488)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 437 (488)
..+|..+...+.+.|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 66788899999999999999 777887654
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=2.6e-07 Score=71.73 Aligned_cols=100 Identities=9% Similarity=-0.075 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
+...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|++..+.. +.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34566677777788888888888888887665 4567777888888888888888888888877642 334677778888
Q ss_pred HHhhcCCHHHHHHHHHHHHHcC
Q 011323 418 ACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
++...|++++|...|+++.+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888887743
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.64 E-value=8.9e-07 Score=77.18 Aligned_cols=191 Identities=10% Similarity=-0.014 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 011323 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (488)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (488)
+...+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4456666677777777777777777777665433 66677777777777777777777777777654 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 011323 348 ACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (488)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 426 (488)
+|...|++++|...|++..+.. |+ ...+...+....+ ..++. -+........+.+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 7888888888888777766432 11 0011111111111 11111 12222222234444444444322 267888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHh----hcHHHHHHHHHHhhh
Q 011323 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCS----RRYEKARTLNEHVLS 470 (488)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~a~~~~~~~~~ 470 (488)
+|++.++++.+ ..|+......-+.... ++++++.++++.+..
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888877665 3455544333333222 246677777766543
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=1.3e-06 Score=65.77 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|.+.++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3455566666667777777777777766553 3456666667777777777777777777766653 3345666666677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
+...|++++|...|++..... +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777777777766553 2345555555555555443
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=1.6e-06 Score=64.64 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 011323 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (488)
Q Consensus 308 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 387 (488)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 333333444444444444444443322 1223333444444444444444444444443322 22333344444444444
Q ss_pred CChhHHHHHHHHHH
Q 011323 388 DQLPKTMEVLSDMK 401 (488)
Q Consensus 388 ~~~~~a~~~~~~~~ 401 (488)
|++++|...++++.
T Consensus 91 ~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 91 GDYDEAIEYYQKAL 104 (125)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444443
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=8.1e-07 Score=77.43 Aligned_cols=96 Identities=9% Similarity=-0.093 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011323 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (488)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 206 (488)
...+..+...+...|++++|.+.|+...+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444445555555555555555555555442 2244555555555555555555555555555442 2234455555555
Q ss_pred HHccCCHHHHHHHHHHHh
Q 011323 207 CGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~ 224 (488)
+...|++++|...|++..
T Consensus 82 ~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555543
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=1.3e-06 Score=66.15 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011323 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (488)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 169 (488)
.+...+..+...+...|++++|+..++...+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 344556666666666777777777776666543 3355666666666666677777777776666543 23455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 209 (488)
..+...|++++|.+.|++..... +.+...+..+..++..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 66666666766666666665542 2223344444444433
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=1.3e-06 Score=65.94 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2234444444444444555555555444444332 2234444444444445
Q ss_pred CCChhHHHHHHHHHHh
Q 011323 387 GDQLPKTMEVLSDMKS 402 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~ 402 (488)
.|++++|...+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 5555555555544443
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=5.3e-07 Score=74.29 Aligned_cols=156 Identities=10% Similarity=0.019 Sum_probs=87.6
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CccHHHHHHHHHHHHhcCCH
Q 011323 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYSSLMGACSNAKNW 355 (488)
Q Consensus 281 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 355 (488)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+. +. +.....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123445555555666666666666666655441 11 12244566666777777777
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHhhcC
Q 011323 356 QKALELYEHMKSI----KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPN--TITYSILLVACERKD 423 (488)
Q Consensus 356 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g 423 (488)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+ .+ .+. ..++..+...+...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCc
Confidence 7777777665432 1011 133456666677777777777777777553 11 111 234566777778888
Q ss_pred CHHHHHHHHHHHHHc
Q 011323 424 DVEVGLMLLSQAKED 438 (488)
Q Consensus 424 ~~~~a~~~~~~~~~~ 438 (488)
++++|.+.+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888776643
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=1.3e-06 Score=66.10 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 3333344444444444444444443332 1233344444444444444444444444443322 2233344444444444
Q ss_pred CCChhHHHHHHHHHH
Q 011323 387 GDQLPKTMEVLSDMK 401 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~ 401 (488)
.|++++|.+.+++..
T Consensus 97 ~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 97 MKDYTKAMDVYQKAL 111 (133)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444443
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.59 E-value=2.2e-06 Score=72.99 Aligned_cols=185 Identities=10% Similarity=-0.047 Sum_probs=110.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHH-------HHHHhhhHHHHHHHHHhhhCCC--C-------C---------
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARF-------FNVCKSQKAIKEAFRFFKLVPN--P-------T--------- 91 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~--~-------~--------- 91 (488)
+.++...|++.|.++.+.+ |.....+..+ ...+...++..+++-.+..... | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 6789999999999999887 5555554444 3344444444444444332221 0 1
Q ss_pred ------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HH
Q 011323 92 ------LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VH 163 (488)
Q Consensus 92 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 163 (488)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 2233445566777777777777777666543 322255555556677777777777776443321 111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566667777777777777777777764332133 234455556666777777777777777653
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=5.4e-07 Score=74.22 Aligned_cols=131 Identities=17% Similarity=0.047 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCC--
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-- 160 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-- 160 (488)
..++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 334444445555555555555555444331 111 12334555555555666666666555554432 1011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKPD--RVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
....+..+...+...|++++|...+++.... + .+. ..++..+...+...|++++|...+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 1233455555555666666666655554421 1 011 122344445555555555555555444
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.55 E-value=3.5e-07 Score=71.00 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|.+.|++..... +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3455556666777777777777777776654 4466677777777777777777777777776653 3355666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 011323 172 CAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~ 191 (488)
|...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=2.5e-06 Score=76.46 Aligned_cols=129 Identities=11% Similarity=-0.037 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011323 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVG--------------IISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (488)
Q Consensus 306 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 371 (488)
.+..+...+.+.|++++|...|++..+...... ...+..+..+|.+.|++++|...++++.+.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344444555555555555555555554331111 4677778888888888888888888887765 4
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH-HHHHHHHH
Q 011323 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG-LMLLSQAK 436 (488)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 436 (488)
.+...|..+..+|...|++++|+..|++..+.. +.+...+..+...+...|+.+++ ...++.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888888887642 33466777777888888887777 34555544
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.54 E-value=2.5e-06 Score=64.04 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
...+......+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3445556666667777777777777666554 3456666667777777777777777777766532 3345666667777
Q ss_pred HhhcCCHHHHHHHHHHHHH
Q 011323 419 CERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~ 437 (488)
+...|++++|...++++.+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7777777777777776665
No 149
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.7e-06 Score=73.66 Aligned_cols=131 Identities=11% Similarity=-0.014 Sum_probs=92.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC-CC----HHHHHHHHHHHHhc
Q 011323 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PT----LSTFNMLMSVCASS 105 (488)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----~~~~~~l~~~~~~~ 105 (488)
-...|+..|++++|.++|+.+...+ |... ....+..++...+++++|+..|+.... ++ ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 4466778999999999998887765 5555 666677778888888888888876653 22 23566677788888
Q ss_pred CChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (488)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH
Confidence 888888888887764332143 345666677777888888888888888776 44433333
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.53 E-value=7.4e-05 Score=65.62 Aligned_cols=170 Identities=11% Similarity=0.018 Sum_probs=96.7
Q ss_pred HccCCHH-HHHHHHHHHhhCCCCCCCCcch-HHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011323 208 GQSGAVD-RAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQ----------VDRAREVYKMIHKYNIKGTPEVYTIA 275 (488)
Q Consensus 208 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (488)
.+.|.++ +|+++++.+... .|+..+ |+.--.++...+. +++++.+++.+.... +.+..+|+.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3455544 778888887753 455433 4433333333322 456666777666655 4566666666
Q ss_pred HHHHHccC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 011323 276 INCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (488)
Q Consensus 276 ~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (488)
...+.+.+ .+++++.+++.+.+..+. |..+|+.-..++...|. ++++++.+..+.+.. +-+...|+.....+.+.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 65666655 366777777777766554 66666666666666666 467777777776654 33555555555444433
Q ss_pred --------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 353 --------------KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (488)
Q Consensus 353 --------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (488)
+.++++.+.+....... +-|...|+.+-..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 23555556655555443 345555554433333
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=9.3e-06 Score=59.70 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...+..+...+...|++++|...++...... +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455666666777777777777777776653 4456667777777777777777777777766653 3346666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 011323 172 CAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~ 191 (488)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777776655
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.52 E-value=1.6e-06 Score=65.26 Aligned_cols=98 Identities=12% Similarity=0.208 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYS 413 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~----~~~~~ 413 (488)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 445566677777777777777777776654 3456667777777777777777777777765421 1111 23556
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 414 ILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 414 ~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.+..++...|++++|++.|++.++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6667777778888888888777663
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=3.2e-06 Score=66.92 Aligned_cols=100 Identities=18% Similarity=0.058 Sum_probs=79.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (488)
Q Consensus 337 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (488)
.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|+..+++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345667777788888888888888888887665 4467788888888888888888888888887742 33577788888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHc
Q 011323 417 VACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.++...|++++|...|+++.+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888888775
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.49 E-value=3.9e-06 Score=64.56 Aligned_cols=98 Identities=8% Similarity=-0.048 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
...+..+...+.+.|++++|...|+++...+ +.+...|..+..+|...|++++|+..+++..... +.++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3455556666777777777777777776654 4466777777777777777777777777777642 3345667777777
Q ss_pred HhhcCCHHHHHHHHHHHHHc
Q 011323 419 CERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~ 438 (488)
+...|++++|...|+++.+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77778888888777777654
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=3.5e-06 Score=75.48 Aligned_cols=131 Identities=11% Similarity=-0.029 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--------------EVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
...+..+...+.+.|++++|...|++..+...... ...+..+..++.+.|++++|+..+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45566677777777777777777777766543321 4677888888888888888888888888765
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH-HHHHHHHH
Q 011323 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT-MEVLSDMK 401 (488)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 401 (488)
+.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|+.++| ...++.|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888888888887765 45677788888888888888877 44555554
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.47 E-value=2.3e-07 Score=76.26 Aligned_cols=88 Identities=17% Similarity=0.073 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
..+..+..+|...|++++|...+++..+.. +.+...+..+..+|...|++++|+..|++..+.. +.+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 445555555555566666655555555443 3344555555555555555555555555555421 22344444444444
Q ss_pred hhcCCHHHHH
Q 011323 420 ERKDDVEVGL 429 (488)
Q Consensus 420 ~~~g~~~~a~ 429 (488)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.47 E-value=7.4e-06 Score=61.41 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..+..+...+...|++++|+..|+...+.. +.+...|..+..++.+.|++++|.+.+++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 455566666777777777777777776654 4466677777777777777777777777777653 33466677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 011323 173 AKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~ 191 (488)
...|++++|...|++....
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777776654
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=1.1e-06 Score=72.22 Aligned_cols=142 Identities=8% Similarity=-0.077 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----------------HHHHHH
Q 011323 73 SQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----------------KLYTTL 133 (488)
Q Consensus 73 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l 133 (488)
..|+++.+.+.++...+ .....+..+...+...|++++|+..|+...+.. +.+. ..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHH
Confidence 34666666666665432 233456667777888888999998888887643 1122 567777
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011323 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (488)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 213 (488)
..++...|++++|.+.++...+.. +.+...+..+..+|...|++++|...|++..... +.+...+..+..++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHH
Confidence 777778888888888887777653 3456677777777778888888888887776653 33455566666665555554
Q ss_pred HHHH
Q 011323 214 DRAF 217 (488)
Q Consensus 214 ~~a~ 217 (488)
+++.
T Consensus 173 ~~~~ 176 (198)
T 2fbn_A 173 RKKD 176 (198)
T ss_dssp HC--
T ss_pred HHHH
Confidence 4444
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=1.5e-05 Score=58.55 Aligned_cols=94 Identities=17% Similarity=0.080 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 2234444444444444444444444444444332 2234444444444444
Q ss_pred CCChhHHHHHHHHHHh
Q 011323 387 GDQLPKTMEVLSDMKS 402 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~ 402 (488)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555544443
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.43 E-value=5.3e-06 Score=62.29 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC--CCC----HHHHHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYGA 167 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 167 (488)
++..+...+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|++.+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556667777777777777777777654 44566777777777777777777777777665321 111 235566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011323 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 200 (488)
+..++...|++++|++.|++.... .|+..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666777777777777777776654 3454443
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=3.8e-06 Score=64.63 Aligned_cols=97 Identities=8% Similarity=-0.023 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|.+.|+...... +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345555667777888888888888777664 4567777777788888888888888888877764 33566777777788
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 011323 173 AKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~ 191 (488)
...|++++|...|+.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888777654
No 162
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=1.9e-05 Score=73.70 Aligned_cols=198 Identities=11% Similarity=0.025 Sum_probs=100.5
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchH---------------HHHHHHHHHHhhhHHHHHHHHHhhhCCC-
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK---------------VYHARFFNVCKSQKAIKEAFRFFKLVPN- 89 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 89 (488)
...+.-...++++|++++|++.|..+.+......+. .....++.++...|++++|.+.+..+.+
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 446677888999999999999999999875321111 1233455556666666666666654421
Q ss_pred ----CCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 90 ----PTL----STFNMLMSVCASSKDSEGAFQVLRLVQE----AGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 90 ----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
++. .+.+.+-..+...|+++.|.++++.... .+..+ -..++..+...+...|++++|.++++.+...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 111 1112222233344556666665554432 11111 1334555566666666666666666555432
Q ss_pred --CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 157 --GIE--P-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKPD--RVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 157 --~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
+.. + ...++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111 1 1234555555666666666666665554321 11111 122333344444555555555544443
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=1.9e-05 Score=60.09 Aligned_cols=100 Identities=7% Similarity=-0.075 Sum_probs=66.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (488)
Q Consensus 337 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (488)
.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345666666666777777777777777666544 3456666667777777777777777777766542 33456666777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHc
Q 011323 417 VACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.++...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777766653
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=3.7e-06 Score=61.27 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--NTITYSILLVA 418 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~ 418 (488)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33444445555555555555555554433 2334445555555555555555555555555431 22 34455555555
Q ss_pred Hhhc-CCHHHHHHHHHHHHHc
Q 011323 419 CERK-DDVEVGLMLLSQAKED 438 (488)
Q Consensus 419 ~~~~-g~~~~a~~~~~~~~~~ 438 (488)
+... |++++|.+.++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555543
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=6e-06 Score=62.13 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC--CCC----HHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTY 165 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 165 (488)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++...+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777778888888888888777664 45667777778888888888888888887766421 112 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011323 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (488)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 205 (488)
..+...+...|++++|.+.|+..... .|+......+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 77777788888888888888877765 345544444433
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.37 E-value=8.1e-06 Score=59.40 Aligned_cols=95 Identities=12% Similarity=0.022 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhHHHHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP--DRVVFNALITA 206 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~ 206 (488)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444444455555555555555544432 2234444555555555555555555555554442 22 34445555555
Q ss_pred HHcc-CCHHHHHHHHHHHhh
Q 011323 207 CGQS-GAVDRAFDVLAEMNA 225 (488)
Q Consensus 207 ~~~~-g~~~~a~~~~~~~~~ 225 (488)
+... |++++|.+.++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 555555555555544
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=5.1e-06 Score=62.52 Aligned_cols=95 Identities=11% Similarity=0.175 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSIL 415 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~----~~~~~~l 415 (488)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. ..++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333444444444444444444443322 2233344444444444444444444444443311 0011 3344444
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH
Q 011323 416 LVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
...+...|++++|.+.++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444455555555555544444
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=2.2e-05 Score=59.73 Aligned_cols=97 Identities=7% Similarity=-0.090 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44455555555555555555555555555443 3344555555555555555555555555555442 223445555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011323 171 GCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~ 189 (488)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555544
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.34 E-value=8.9e-05 Score=69.03 Aligned_cols=197 Identities=9% Similarity=-0.041 Sum_probs=114.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDR----------------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 232 (488)
.+.+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+..+....... +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF-A 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-C
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-c
Confidence 45567788888888888888765322111 125667777777888888887777765532111 1
Q ss_pred Ccc----hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CC-
Q 011323 233 DHI----TIGALMKACANAGQVDRAREVYKMIHKY----NIKG-TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GV- 300 (488)
Q Consensus 233 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 300 (488)
+.. +.+.+-..+...|+++.+..+++..... +..+ -..++..+...|...|++++|..++.++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 1122222333456777777777655432 1111 2345666777777777777777777765532 11
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 301 -IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVG--IISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 301 -~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
.+ ...++..++..|...|++++|..+++..... +.++. ...+..+...+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 2345666677777777777777777765532 11111 2345555566667777777777666554
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=3.5e-05 Score=59.32 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 011323 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (488)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (488)
.+...+..+...+...|++++|++.|+...+. .|+ ...+..+..++...|++++|.+.++...+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45667777777788888888888888887765 344 5677777777888888888888888777653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 166 GALIDGCAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (488)
..+..++...|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777888888888888888877765
No 171
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.31 E-value=2e-05 Score=62.26 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...+..+...+...|++++|++.|+...+.. +.+...|..+..++...|++++|++.|++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566677777888888888888888877764 4467778888888888888888888888877764 335777778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 011323 171 GCAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~ 191 (488)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877765
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=1.3e-05 Score=59.45 Aligned_cols=94 Identities=10% Similarity=-0.057 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011323 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (488)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (488)
..+...+.+.|++++|+..|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334455566666666666666666543 3455566666666666666666666666666553 22455566666666666
Q ss_pred CCHHHHHHHHHHHHhC
Q 011323 176 GQVAKAFGAYGIMRSK 191 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~ 191 (488)
|++++|+..|++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666543
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=7.4e-06 Score=60.87 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 011323 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (488)
.+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 34455556666666666666665543 3355556666666666666666666666665531 223555556666666666
Q ss_pred CHHHHHHHHHHHHH
Q 011323 424 DVEVGLMLLSQAKE 437 (488)
Q Consensus 424 ~~~~a~~~~~~~~~ 437 (488)
++++|+..++++.+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666554
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=4.5e-05 Score=58.70 Aligned_cols=94 Identities=12% Similarity=-0.025 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (488)
..+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 334444444444444444444444444322 22 2333333444444444444444444443332 1223334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011323 346 MGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~ 366 (488)
..++...|++++|...|++..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444443
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.21 E-value=1.1e-06 Score=65.14 Aligned_cols=86 Identities=14% Similarity=-0.008 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 011323 352 AKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 429 (488)
.|++++|...|++..+.+ -+.+...+..+..+|...|++++|+..+++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666542 12234455566666666666666666666666532 334556666666666666666666
Q ss_pred HHHHHHHHc
Q 011323 430 MLLSQAKED 438 (488)
Q Consensus 430 ~~~~~~~~~ 438 (488)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.20 E-value=1.9e-05 Score=62.23 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSI--------K---------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 403 (488)
.+......+.+.|++++|...|.+.... . -+.+...|..+..+|.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554432 0 0223456777777788888888888888887764
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH
Q 011323 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (488)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 445 (488)
. +.+...|..+..++...|++++|...|+++.+. .|+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 2 345677777888888888888888888887774 45543
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=0.00013 Score=54.49 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=58.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDG 171 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 171 (488)
+...+...|++++|.+.|+.+.+.. +.+. ..+..+..++...|++++|.+.|+...+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 4455666777777777777766543 2222 456666667777777777777777766652 112 4556666667
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 011323 172 CAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~ 191 (488)
+...|++++|...|+++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=2.6e-05 Score=61.04 Aligned_cols=132 Identities=13% Similarity=0.011 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 011323 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGI---S--VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKP-TVS 375 (488)
Q Consensus 306 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~ 375 (488)
++..+...+...|++++|...+++..+... . .....+..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444555555556655555555443210 0 01135556666666777777777766665432 1000 134
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 376 TMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 376 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+..+...+...|++++|.+.+++..+. +.++ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4556666777777777777777765431 1111 134566677777788888888888877654
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.13 E-value=4.4e-05 Score=60.08 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 409 (488)
+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+. .|+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 34677778888888888888888888887765 456778888888888888888888888888763 4553
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=1.8e-05 Score=74.47 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=89.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (488)
+...+.+.|++++|.+.+++..+.... +...+..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344567788899999998888876443 67788888888888899999999988888875 4467788888888888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHcCCChhHHHHHHH
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITA--LCDGDQLPKTMEVLS 398 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 398 (488)
+++|.+.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998888887654 2334455555555 777888888888887
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=0.00012 Score=54.84 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 011323 344 SLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
.+..++...|++++|...++++.
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444444444444444433
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=2.6e-05 Score=61.06 Aligned_cols=131 Identities=12% Similarity=-0.014 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCC----HH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-AD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VH 163 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 163 (488)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666677777777777777665542100 11 13566677777777777777777776554210 011 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
++..+...+...|++++|...+++.... +..+ ...++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5566666777777777777777665432 1100 12334445555556666666666655543
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.08 E-value=5.7e-05 Score=70.77 Aligned_cols=96 Identities=6% Similarity=0.027 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
...|..+..+|.+.|++++|...++++.+.. +.+...|..+..+|...|++++|+..|++.++.. +-+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4667777778888888888888888877665 4567777778888888888888888888877642 2245566777777
Q ss_pred HhhcCCHHHHHH-HHHHHH
Q 011323 419 CERKDDVEVGLM-LLSQAK 436 (488)
Q Consensus 419 ~~~~g~~~~a~~-~~~~~~ 436 (488)
+.+.|+.+++.+ .++.|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777766553 344443
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=6.4e-05 Score=68.09 Aligned_cols=119 Identities=9% Similarity=0.039 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQG---------------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 371 (488)
+..+...+.+.|++++|+..|++..+.- .+.+...|..+..+|.+.|++++|...++++.+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 3444445555555555555555544310 01223445555555555555555555555555443 2
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 011323 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (488)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (488)
.+...|..+..+|...|++++|+..|++..+.. +.+...+..+...+...++.++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554421 1233344444444444444433
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.05 E-value=9.4e-05 Score=69.27 Aligned_cols=122 Identities=7% Similarity=-0.050 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (488)
..|..+...+.+.|++++|+..|++..+.. +.+ ...|..+..++.+.|++++|+..+++.++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 356666667777777777777777766542 112 3455555556666666666666666655542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011323 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (488)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 217 (488)
+.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2245555555556666666666666666555442 223444455555555555554443
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.05 E-value=1.8e-05 Score=74.57 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=89.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011323 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (488)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 179 (488)
..+.+.|++++|++.+++..+.. +.+..+|..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567788999999998888764 4567888889999999999999999999988874 346778888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHH--HHccCCHHHHHHHHH
Q 011323 180 KAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLA 221 (488)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 221 (488)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999888763 2234455555555 777888888988887
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.00 E-value=9.2e-05 Score=67.06 Aligned_cols=121 Identities=10% Similarity=0.003 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEA---------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (488)
.+..+...+.+.|++++|++.|++..+. --+.+..+|..+..++.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4566667778888888888888777651 001233455556666666666666666666665542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH
Q 011323 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (488)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 216 (488)
+.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2245555566666666666666666666655542 22344444444444444444333
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.98 E-value=2.7e-05 Score=57.41 Aligned_cols=86 Identities=12% Similarity=-0.073 Sum_probs=55.7
Q ss_pred cCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 182 (488)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|.+.|++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777776543 12344566777777777777777777777777663 334666777777777777777777
Q ss_pred HHHHHHHhC
Q 011323 183 GAYGIMRSK 191 (488)
Q Consensus 183 ~~~~~~~~~ 191 (488)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=2.9e-05 Score=69.50 Aligned_cols=151 Identities=9% Similarity=-0.085 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (488)
Q Consensus 304 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 383 (488)
...+..+...+.+.|++++|...|++..+.. |+... +...|+.+++...+ . ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 3445556666667777777777777766542 22221 12223333322211 0 1367778888
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-h---hcHH
Q 011323 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-S---RRYE 459 (488)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~---~~~~ 459 (488)
|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|+++.+. .|+.......+..+ . ...+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887642 345777888888888888888888888887753 34433322222222 1 1566
Q ss_pred HHHHHHHHhhhccCCCC
Q 011323 460 KARTLNEHVLSFNSGRP 476 (488)
Q Consensus 460 ~a~~~~~~~~~~~~~~~ 476 (488)
++...++++....|.++
T Consensus 317 ~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHhhCCCCCCC
Confidence 67777777766665554
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.93 E-value=0.00044 Score=53.03 Aligned_cols=110 Identities=11% Similarity=-0.019 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhC-----CC
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKP------T-----VSTMNALITALCDGDQLPKTMEVLSDMKSL-----GL 405 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 405 (488)
+......+.+.|++++|...|++..+..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555566666666666666665432110 2 227777777778888888888887777662 11
Q ss_pred CCC-HHHH----HHHHHHHhhcCCHHHHHHHHHHHHHc-----CCCCcHHHHHHHH
Q 011323 406 CPN-TITY----SILLVACERKDDVEVGLMLLSQAKED-----GVIPNLVMFKCII 451 (488)
Q Consensus 406 ~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li 451 (488)
.|+ ...| .....++...|++++|+..|++..+. ++.+........+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 554 4567 77788888888888888888887653 5555554444443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=6e-05 Score=67.46 Aligned_cols=148 Identities=9% Similarity=0.000 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 011323 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (488)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (488)
...+..+...+.+.|++++|...|.+..... |+... +...|+..++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4567788889999999999999999988753 33321 223334444433221 2367788888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HhhcCCHH
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVA-CERKDDVE 426 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 426 (488)
|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999888765 456788888889999999999999999988763 444 4444444444 23345667
Q ss_pred HHHHHHHHHHHc
Q 011323 427 VGLMLLSQAKED 438 (488)
Q Consensus 427 ~a~~~~~~~~~~ 438 (488)
.+...|+.|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 777788777653
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.85 E-value=0.00029 Score=54.08 Aligned_cols=94 Identities=12% Similarity=0.015 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------C
Q 011323 308 SALIDFAGHAGKVEAAFEILQEAKNQGIS-----------VGIISYSSLMGACSNAKNWQKALELYEHMKSI-------K 369 (488)
Q Consensus 308 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 369 (488)
......+.+.|++++|+..|++..+.... .+...|..+..++.+.|++++|+..+++.++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33344455555666666666555543211 01237888888888888888888888888765 4
Q ss_pred CCCCHHHH----HHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 370 LKPTVSTM----NALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 370 ~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
+.+...| .....++...|++++|+..|++.++
T Consensus 95 -pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 -QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp -STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3345677 7888889999999999999998764
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.83 E-value=0.0015 Score=62.68 Aligned_cols=172 Identities=8% Similarity=0.013 Sum_probs=129.5
Q ss_pred hcCCH-HHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 011323 37 RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (488)
Q Consensus 37 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~ 102 (488)
+.|++ ++|++.++.+++.+ |.+.........+....|+ ++++++.++.+. +.+..+|+.-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45544 67899999999987 6776666656666666666 888888888765 45777888877888
Q ss_pred HhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----
Q 011323 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (488)
Q Consensus 103 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 175 (488)
.+.+ +++++++.++.+.+.. +.+..+|+.-..++.+.| ..+++++.++++++.. +-|...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 8888 6699999999998876 567888888888888888 8888999988888764 44778888777766653
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011323 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (488)
Q Consensus 176 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 213 (488)
+.++++++.+++..... +-+...|..+-..+.+.+..
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45688888888887664 44677777777766666653
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.79 E-value=0.0012 Score=49.94 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=7.0
Q ss_pred cCCHHHHHHHHHHHHHc
Q 011323 422 KDDVEVGLMLLSQAKED 438 (488)
Q Consensus 422 ~g~~~~a~~~~~~~~~~ 438 (488)
.+++++|.++|++..+.
T Consensus 110 ~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHC
Confidence 33444444444444333
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.79 E-value=0.0035 Score=60.16 Aligned_cols=173 Identities=6% Similarity=-0.052 Sum_probs=117.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (488)
...++|++.++.+.+.+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34467788888887765 4456667766666666666 788888888887764 34677777777777777
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc-----
Q 011323 176 G--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----- 247 (488)
Q Consensus 176 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 247 (488)
+ +++++++.++++.+.. +-+..+|+.-.-.+.+.| .++++++.++++.... ..+..+|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---CCCccHHHHHHHHHHhhccccc
Confidence 7 6688888888888765 446777777776777777 7788888877776541 23445565555555442
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011323 248 ---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (488)
Q Consensus 248 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (488)
+.++++.+.++.+.... +.+...|......+.+.+..
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 44677778887777665 55667777776666666653
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=2.3e-05 Score=56.92 Aligned_cols=61 Identities=7% Similarity=0.054 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444444444444444444444444332 22344444444444444444444444444443
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.78 E-value=8.3e-05 Score=69.59 Aligned_cols=99 Identities=11% Similarity=-0.020 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-----cCCC-
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEA-----G--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIE- 159 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~- 159 (488)
.+++.|..+|...|++++|+.++++..+. | .+....+++.|...|...|++++|..++++... .|..
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 36677777777777777777777665531 2 111245677888888888888888888777654 2321
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 160 PN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 160 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (488)
|+ ..+.+.+-.++...+.+++|..+|..+++.
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 334556666777778888888888887653
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.78 E-value=0.0013 Score=49.87 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=39.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD- 386 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 386 (488)
..|...+.+++|.+.|++..+.| ++..+..+...|.. .+++++|...|++..+.+ +...+..|...|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAG 106 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCC
Confidence 33333344444444444444433 33444444444444 445555555555544432 33444444444444
Q ss_pred ---CCChhHHHHHHHHHHhCC
Q 011323 387 ---GDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 387 ---~~~~~~a~~~~~~~~~~~ 404 (488)
.+++++|.+.+++..+.|
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 445555555555554443
No 199
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.75 E-value=0.00017 Score=67.44 Aligned_cols=126 Identities=8% Similarity=-0.024 Sum_probs=84.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC-CHHHHH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KP-TVSTMN 378 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~ 378 (488)
.+...|++++|+.++++..+. | .+....+++.|..+|...|++++|..++++..+ .|. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888776542 1 112346788888888888888888888877653 121 12 245677
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKS-----LGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.|...|...|++++|..++++..+ .|- .|+ ..+...+..++...|.+++|...+.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887642 231 122 334455666677778888888888877653
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.69 E-value=0.00011 Score=56.31 Aligned_cols=97 Identities=9% Similarity=0.067 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhc
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ----------LPKTMEVLSDMKSLGLCP-NTITYSILLVACERK 422 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 422 (488)
.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++.++. .| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHh
Confidence 3445555555544443 3344444444444444433 34777777776663 34 356666677777655
Q ss_pred -----------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011323 423 -----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 423 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (488)
|++++|++.|+++.+ +.|+...|...+...-
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 478888888888887 5677777776666643
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.66 E-value=0.0004 Score=53.13 Aligned_cols=106 Identities=10% Similarity=0.004 Sum_probs=63.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011323 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL 115 (488)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 115 (488)
-+.+.+++|++.++...+.+ |.+...+..++.++...++++.+....+ .+++|+..|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~---------------------~~~eAi~~l 69 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQ---------------------MIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHH---------------------HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHh---------------------HHHHHHHHH
Confidence 35567778888888777776 6666666666666666665542222111 255666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011323 116 RLVQEAGLKADCKLYTTLITTCAKSG-----------KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (488)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (488)
++..+.. +.+..+|..+..+|...| ++++|++.|++.++. .|+...|..
T Consensus 70 e~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 70 EEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 6666553 335556666666666553 666666666666665 455444433
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.65 E-value=0.00087 Score=46.17 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
.+..+...+...|++++|+..++...+.. +.+...+..+..++...|++++|.+.+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44444445555555555555555554432 233444455555555555555555555554443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.62 E-value=0.00061 Score=46.98 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444555555555555555555554432 23344455555555555555555555555544
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00037 Score=50.31 Aligned_cols=93 Identities=9% Similarity=-0.045 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHH
Q 011323 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT------VST 376 (488)
Q Consensus 303 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~ 376 (488)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 34456666667777777777777777777654 3456677777777777777777777777777653 122 344
Q ss_pred HHHHHHHHHcCCChhHHHHHH
Q 011323 377 MNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 377 ~~~l~~~~~~~~~~~~a~~~~ 397 (488)
+..+..++...|+.+.|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444555555555555544433
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00079 Score=49.07 Aligned_cols=78 Identities=10% Similarity=0.023 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
|...|++..+.. +.+...+..+...|...|++++|+..+++..+.. +.+...|..+...+...|++++|...|+++.+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566655543 3456666666777777777777777777766532 33456666677777777777777777776665
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.59 E-value=0.00075 Score=49.19 Aligned_cols=79 Identities=18% Similarity=0.083 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
.|++.|+...+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555443 3455566666666666666666666666666553 2345566666666666666666666666655
Q ss_pred h
Q 011323 190 S 190 (488)
Q Consensus 190 ~ 190 (488)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.42 E-value=0.009 Score=52.74 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011323 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (488)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (488)
+.+..+|..+...+...|++++|...+++.+..+ |+...|..+...+.-.|++++|.+.|++.... .|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 5577788888777777899999999999988874 77777778888888899999999999888776 566666543
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.39 E-value=0.0011 Score=46.97 Aligned_cols=64 Identities=19% Similarity=0.114 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444445555555555555555555544421 22334445555555555555555555554443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.27 E-value=0.0022 Score=45.28 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (488)
...+..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444444432 2233344444444444444444444444433
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.20 E-value=0.0057 Score=46.26 Aligned_cols=96 Identities=16% Similarity=0.071 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHH
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGL 429 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 429 (488)
...+.+-|.+....+ .++..+...+..++++.+ +.++++.++++..+.. .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 455566666666655 477888888888888888 5668888888887753 34 3556667778888899999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 430 MLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
++++.+.+ +.|+..--..+...+
T Consensus 92 ~y~~~lL~--ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHH
Confidence 99988887 557665555555543
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.02 E-value=0.0031 Score=44.23 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=35.5
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 381 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
...+.+.|++++|++.+++..+.. +.+.. .+..+..++...|++++|.+.|+++.+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344556666777777776666531 22345 6666666666777777777777766664
No 212
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.93 E-value=0.023 Score=57.52 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=25.9
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
....|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34556666665554322 245556666666666666666666665543
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.89 E-value=0.018 Score=50.82 Aligned_cols=63 Identities=5% Similarity=-0.158 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
++.++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444333333444444444444444432 3333343444444444444444444444443
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.58 E-value=0.018 Score=40.12 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=27.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
.+...|++++|+..++...+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555554432 22334 4555555555555555555555555444
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.58 E-value=0.15 Score=51.60 Aligned_cols=153 Identities=14% Similarity=0.064 Sum_probs=96.8
Q ss_pred HHHhcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011323 101 VCASSKDSEGAFQ-VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (488)
Q Consensus 101 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 179 (488)
.....+++++|.+ ++.. ++ +......++..+.+.|..+.|.++.+.-. .-+......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3445677887766 4411 11 12233667777888888888876653211 1134456789999
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (488)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 259 (488)
.|+++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. +..+...+...|+.+...++-+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 998885432 3678899999999999999999999988742 34555666667777766666555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011323 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (488)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 294 (488)
....+. ++....+|.+.|++++|.+++.+
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 554431 23333445556666666655543
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.55 E-value=0.0086 Score=55.04 Aligned_cols=61 Identities=8% Similarity=-0.089 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 163 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
.+++.|..+|...|++++|+.++++.... | -.|+ ..+++.|...|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34455555555555555555555544321 1 0111 234455555555555555555555544
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.54 E-value=0.0083 Score=55.14 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHHC-----C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC-CHHHHHHHHH
Q 011323 317 AGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KP-TVSTMNALIT 382 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~ 382 (488)
.|++++|+.++++..+. | .+....+++.+..+|...|++++|..++++... .|. .| ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666666554431 1 011134555666666666666666666655542 110 11 1234555555
Q ss_pred HHHcCCChhHHHHHHHHH
Q 011323 383 ALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~ 400 (488)
.|...|++++|+.++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 555555555555555554
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.51 E-value=0.017 Score=53.07 Aligned_cols=26 Identities=8% Similarity=-0.225 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
+++.|...|...|++++|+.+++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.49 E-value=0.03 Score=38.62 Aligned_cols=48 Identities=4% Similarity=0.031 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
.++|..++++..+.. +-++.....+...+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555554443 334444444555555555555555555555543
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.41 E-value=0.015 Score=53.60 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=43.4
Q ss_pred HcCCHhHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HhHHHHHH
Q 011323 139 KSGKVDAMFEVFHEMVNAG---IEP----NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALI 204 (488)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~ll 204 (488)
+.|++++|++++++.++.. +.| ...+++.+...|...|++++|+.++++.... | -.|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4455566666665555321 111 1234555566666666666666665554421 1 1111 33455555
Q ss_pred HHHHccCCHHHHHHHHHHHh
Q 011323 205 TACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~ 224 (488)
..|...|++++|+.++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 66666666666666555543
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.39 E-value=0.059 Score=37.10 Aligned_cols=67 Identities=12% Similarity=-0.036 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 371 KPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 371 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
+.|...+..+..++...++ .++|..++++.+... +-+......+...+...|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455666666666543333 567777777766632 334566666667777777777777777777664
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.36 E-value=0.066 Score=38.87 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHH
Q 011323 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK---TMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEV 427 (488)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 427 (488)
..+..+.+-+......+ .++..+-..+..++++...... ++.+++++.+.+ .| .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34445555555555444 3677777777888888776665 778888877653 23 33445566777888888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Q 011323 428 GLMLLSQAKEDGVIPNLVMFKCIIG 452 (488)
Q Consensus 428 a~~~~~~~~~~~~~~~~~~~~~li~ 452 (488)
|.++++.+++ +.|+..-...|-.
T Consensus 93 A~~~~~~lL~--~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHH
Confidence 8888888887 4455444333333
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.20 E-value=0.042 Score=41.51 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHHH
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
..+.+-|.+..+.+ .++..+...+..++++++ +.++++.+++...+.. .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 44455555555544 356666666777777766 5557777777776543 23 24455556667777777777777
Q ss_pred HHHHHHhCCCCCC
Q 011323 396 VLSDMKSLGLCPN 408 (488)
Q Consensus 396 ~~~~~~~~~~~p~ 408 (488)
.++.+++ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 7777776 3554
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.16 E-value=0.2 Score=42.43 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc-CCHH
Q 011323 144 DAMFEVFHEMVNAGIEPN---VHTYGALIDGCAK-----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-GAVD 214 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~ 214 (488)
..|...+++.++. .|+ ...|..+...|.. -|+.++|.+.|++....+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4455555555544 344 3455555555555 356666666666655542111244455555555553 5566
Q ss_pred HHHHHHHHHhhC
Q 011323 215 RAFDVLAEMNAE 226 (488)
Q Consensus 215 ~a~~~~~~~~~~ 226 (488)
++.+.+++....
T Consensus 258 ~a~~~L~kAL~a 269 (301)
T 3u64_A 258 GFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC
Confidence 666666655554
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.83 E-value=0.1 Score=44.24 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc-----CCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhc-C
Q 011323 355 WQKALELYEHMKSIKLKPT---VSTMNALITALCD-----GDQLPKTMEVLSDMKSLGLCP--NTITYSILLVACERK-D 423 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 423 (488)
...|...+++..+.. |+ ...|..+...|.. .|+.++|.+.|++.++. .| +..++..+...+++. |
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 456666677766653 44 5567777777777 47888888888888773 45 366677777777774 7
Q ss_pred CHHHHHHHHHHHHHcCCC--CcHHHHHHH
Q 011323 424 DVEVGLMLLSQAKEDGVI--PNLVMFKCI 450 (488)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l 450 (488)
+.+++.+.+++.+..+.. |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 888888888888877655 665444433
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.81 E-value=0.052 Score=38.34 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIK------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..+..+...+.+.|++..|...|+...+.. -.+...++..+..++.+.|++++|+.+++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444444555555555555554443210 012233444444444444444444444444443
No 227
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.74 E-value=0.36 Score=36.07 Aligned_cols=114 Identities=9% Similarity=-0.024 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCHH-H---HHHHHH---HHHHcCCHhHHHHHHHHHHH
Q 011323 89 NPTLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCK-L---YTTLIT---TCAKSGKVDAMFEVFHEMVN 155 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~---~~~l~~---~~~~~~~~~~a~~~~~~~~~ 155 (488)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. . |-.+-- .+...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56788888888888888888 8888899888764 466421 1 111111 11344889999999999877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011323 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (488)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 205 (488)
.+ +-=...|-.....-.+.|++..|.+++......+.. +...+...++
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 52 323677777777888899999999999998887643 3344444443
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.74 E-value=0.087 Score=37.17 Aligned_cols=66 Identities=11% Similarity=0.007 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
+...+..+...+.+.+++..|...|+...+.- -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455566667777777777777776665431 1234456666666666777777777777666654
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.60 E-value=0.12 Score=38.60 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHcCCChhHHHHHHHHHHhCC
Q 011323 338 GIISYSSLMGACSNAKNW------QKALELYEHMKSIKLKPTVS----TMNALIT---ALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~----~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
|..+|-..+....+.|+. +...++|++.... ++|+.. .|-.+-- .+...++.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555555 5666677666542 244321 1111110 1223478899999999887543
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH
Q 011323 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (488)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 444 (488)
-.- ...|.....--.+.|+...|.+++.+.+..+..|..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 223 667777777778899999999999999887766554
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.59 Score=36.31 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=21.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555544433 13445555555555555555555555443
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.22 E-value=0.6 Score=34.10 Aligned_cols=84 Identities=15% Similarity=0.033 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 011323 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 431 (488)
+|++......+-.+ ..+....+..+..+...|.-|+-.+++..+... -+|++.....+..+|.+.|+..++.++
T Consensus 74 C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 44555444444332 234456667778888889999988888886543 478888888999999999999999999
Q ss_pred HHHHHHcCCC
Q 011323 432 LSQAKEDGVI 441 (488)
Q Consensus 432 ~~~~~~~~~~ 441 (488)
+.++-+.|++
T Consensus 148 l~~AC~kG~k 157 (172)
T 1wy6_A 148 LIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhhhH
Confidence 9988888764
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.90 E-value=0.2 Score=36.37 Aligned_cols=87 Identities=11% Similarity=0.034 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPK 392 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 392 (488)
.....+.+-+......| .++..+-..+..++++..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 33445555555555544 3667777777778887776655 778888877654 23 23444456678888888888
Q ss_pred HHHHHHHHHhCCCCCC
Q 011323 393 TMEVLSDMKSLGLCPN 408 (488)
Q Consensus 393 a~~~~~~~~~~~~~p~ 408 (488)
|.+.++.+++. .|+
T Consensus 93 A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHh--CCC
Confidence 88888888873 554
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.75 E-value=1.1 Score=34.78 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
.|..|.......|+++-|.+.|.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 33333333333333333333333
No 234
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.35 E-value=1.1 Score=32.79 Aligned_cols=82 Identities=11% Similarity=0.087 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHH
Q 011323 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (488)
Q Consensus 371 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 447 (488)
.|+..+-..+..++++..+. .+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+ +.|+..-.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHHH
Confidence 57777777777777777654 36778888877654111355566777888888888888888888887 55666655
Q ss_pred HHHHHHH
Q 011323 448 KCIIGMC 454 (488)
Q Consensus 448 ~~li~~~ 454 (488)
..|-...
T Consensus 115 ~~Lk~~I 121 (134)
T 3o48_A 115 GALKSMV 121 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 235
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.10 E-value=2.8 Score=44.12 Aligned_cols=87 Identities=9% Similarity=0.079 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011323 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (488)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (488)
..-|..++..+.+.+.++.+.++-...++...+.+. ..|..+++.+...|++++|...+-.+..... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 356777888888888888888777766654322121 2577888888888999999888887776533 4566777
Q ss_pred HHHHHHccCCHHH
Q 011323 203 LITACGQSGAVDR 215 (488)
Q Consensus 203 ll~~~~~~g~~~~ 215 (488)
++..++..|..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 7777776666544
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.97 E-value=5.5 Score=36.64 Aligned_cols=162 Identities=13% Similarity=0.132 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HH
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQ--GISVG---IISYSSLMGACSNAKNWQKALELYEHMKS----IKLKPT--VS 375 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~ 375 (488)
...|...+...|++.+|..++..+... +.... ...+...++.|...+++..|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345666777777777777777776532 11111 34556666777777888888777776531 221222 13
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCCHHHHH----HHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 011323 376 TMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYS----ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (488)
Q Consensus 376 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 450 (488)
.+...+..+...+++.+|.+.|.++.+. ....+...+. .++....-.+....-..++.........++...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 3455566666777777777777766431 0111222111 1111111111111122223333333334566777778
Q ss_pred HHHHhh----cHHHHHHHHHHh
Q 011323 451 IGMCSR----RYEKARTLNEHV 468 (488)
Q Consensus 451 i~~~~~----~~~~a~~~~~~~ 468 (488)
+.++.. +++...+.++..
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHhchHhhhHHHHHHHHHH
Confidence 877754 466655555443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.49 E-value=0.95 Score=44.47 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=28.0
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
+...|+++-|+++.++.... .+-+..+|..|...|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44455666666666655543 1223555666666666666666665555544
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.34 E-value=2.4 Score=31.01 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=28.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
...++.+...|.-++..+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3334444444555554454444322 123344444445555555555555555555554444
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.23 E-value=0.00078 Score=60.83 Aligned_cols=211 Identities=13% Similarity=0.113 Sum_probs=130.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 011323 63 YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142 (488)
Q Consensus 63 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (488)
....++.+....+.+.+|++-|=+. .|+..|..++.+..+.|.+++-+..+...++.. .++..=+.|+.+|++.++
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 131 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCS
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCc
Confidence 3445666666667777777666544 455678888999999999999888887665542 333444578889999888
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------CCCCHhHHHH
Q 011323 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--------------------VKPDRVVFNA 202 (488)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~ 202 (488)
..+..+++. .||..-...+..-|...|.++.|.-+|..+.... -.-++.||..
T Consensus 132 L~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 132 LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp SSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred HHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 766443321 3455555566666666666666665555432210 0235677888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011323 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (488)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (488)
+-.+|...+++.-|.-.--.+.- .+| -...++..|-+.|.+++.+.+++.-.... .....+|+-|.-.|++-
T Consensus 205 V~~ACvd~~EfrLAqicGLniIv-----had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVV-----HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHC-----CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HHHHHhCchHHHHHHHhcchhcc-----cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 88888888777665544333332 122 12234555677777777777777766543 45666777777666665
Q ss_pred CChHHHHHHHH
Q 011323 283 GDWEFACSVYD 293 (488)
Q Consensus 283 ~~~~~a~~~~~ 293 (488)
++++..+.++
T Consensus 277 -~PeKlmEHlk 286 (624)
T 3lvg_A 277 -KPQKMREHLE 286 (624)
T ss_dssp -CTTHHHHHHT
T ss_pred -CHHHHHHHHH
Confidence 4444444443
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.81 E-value=3.8 Score=36.95 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 400 (488)
...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444455555555555555544333 334445555555555555555555555543
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.79 E-value=1.8 Score=29.68 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=43.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
+.-++.+-++.+....+-|++....+.+++|.+.+++.-|.++++-++.. ..+...+|..++.-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 34456666666666667778888888888888888888888888776654 222244566666543
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.77 E-value=1 Score=40.75 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 203 (488)
+...++..+...|+.+++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.. .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44556777778888888888877776653 44777888888888888888888888877653 4788877664433
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.63 E-value=8.1 Score=35.53 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=56.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCH----HH
Q 011323 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTP----EV 271 (488)
Q Consensus 201 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~ 271 (488)
..|...+...|++.+|..++.++.....+.... ...+..-++.|...+++..|..++.++... ...+++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 445666777777777777777765432222211 224455566777777887777777765321 112222 23
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
+...+..+...+++.+|.+.|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45556666677777777766666543
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.47 E-value=1.3 Score=43.43 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=30.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
.+...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445566666666666665542 334556666666666666666666655554
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.03 E-value=7.3 Score=33.88 Aligned_cols=187 Identities=12% Similarity=0.059 Sum_probs=106.4
Q ss_pred hhHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 011323 27 EQLHSYNRLIRQGRI---SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 103 (488)
..+.-...-+..|++ =+|.+.+..+..+ +.+++++++|++++-.. ...+.
T Consensus 14 ~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~R----------------y~~~k~y~eAidLL~~G-----------A~~ll 66 (336)
T 3lpz_A 14 RIIARLQRRIAEGQPEEQYEAAQETRLVAAR----------------YSKQGNWAAAVDILASV-----------SQTLL 66 (336)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHhCCCCccccHHHHHHHHHHHH----------------HHhhcCHHHHHHHHHHH-----------HHHHH
Confidence 344455556688888 7888877755432 44567788888775432 22344
Q ss_pred hcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHHcCCHh-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHH
Q 011323 104 SSKDSEGAFQVL----RLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEMV----NAG--IEPNVHTYGALIDGC 172 (488)
Q Consensus 104 ~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~ 172 (488)
+.|+...|-++- +...+.++++|......++..+.....-+ .=.++.+.++ +.| ..-|......+...|
T Consensus 67 ~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~ 146 (336)
T 3lpz_A 67 RSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLY 146 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHH
T ss_pred HCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence 455555544443 55556777888877777777776654321 1122333332 223 234667777888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (488)
.+.+++.+|...|- . |-.++...+..++--+...+... .+|.+.-..++ -|.-.++...
T Consensus 147 ~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~----------------e~dlfiaRaVL-~yL~l~n~~~ 205 (336)
T 3lpz_A 147 VEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESH----------------TAPLYCARAVL-PYLLVANVRA 205 (336)
T ss_dssp HHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG----------------GHHHHHHHHHH-HHHHTTCHHH
T ss_pred HccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCc----------------cHHHHHHHHHH-HHHHhCCHHH
Confidence 88888888877762 2 32344456655554443333211 12222333333 3455678888
Q ss_pred HHHHHHHHH
Q 011323 253 AREVYKMIH 261 (488)
Q Consensus 253 a~~~~~~~~ 261 (488)
|..+++...
T Consensus 206 A~~~~~~f~ 214 (336)
T 3lpz_A 206 ANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665544
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.91 E-value=3.8 Score=30.35 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHcCCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHH
Q 011323 371 KPTVSTMNALITALCDGDQLP---KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (488)
Q Consensus 371 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 447 (488)
.|+..+-..+..++++....+ +++.+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+.+ +.|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 466666666777777666543 5677777776532111334455566777788888888888887777 45655444
Q ss_pred HHHHHH
Q 011323 448 KCIIGM 453 (488)
Q Consensus 448 ~~li~~ 453 (488)
..|-..
T Consensus 114 ~~Lk~~ 119 (144)
T 1y8m_A 114 GALKSM 119 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.84 E-value=2.8 Score=28.74 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
.-+..+-++.+....+.|++.+..+.+++|-+.+++.-|+++++-++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344555555555556666666666666666666666666666666553
No 248
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.52 E-value=11 Score=39.74 Aligned_cols=55 Identities=11% Similarity=0.046 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
...++..+...+..+-+.++..-. +.+...--.+..++...|++++|.+.|.+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 334666677777777776644322 2244444556677888899999999887754
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.15 E-value=4.2 Score=29.67 Aligned_cols=73 Identities=7% Similarity=-0.032 Sum_probs=47.9
Q ss_pred CCCccHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 011323 334 GISVGIISYSSLMGACSNAKNW---QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (488)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 408 (488)
+..|++.+-..+..+++++.+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+++. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 3456666666666677766653 456777777765442123455556677788888888888888888763 554
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.37 E-value=20 Score=36.31 Aligned_cols=156 Identities=9% Similarity=0.052 Sum_probs=80.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCH
Q 011323 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL--SALIDFAGHAGKV 320 (488)
Q Consensus 243 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~ 320 (488)
.+.-.|+.+....++..+.+.. ..+..-...+.-++.-.|+.+.+..+++.+... ..|....- .++.-+|+..|+.
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCH
Confidence 3445566666667766665432 111122222333344667777777777776653 11111111 1233356677777
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHH
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEVLSD 399 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~ 399 (488)
.....++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+++.++..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 66666777776542 2233333333334444566555666666555433 34444444444455555544 467777777
Q ss_pred HHh
Q 011323 400 MKS 402 (488)
Q Consensus 400 ~~~ 402 (488)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 763
No 251
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.14 E-value=4.8 Score=29.34 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
-+..+-++.+....+-|++......+++|.+.+|+.-|.++++-++.+ ..+...+|..++.-+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 355556666666667788888888888888888888888888777654 223345677776653
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.13 E-value=5 Score=29.22 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (488)
|.-+..+-++.+...++.|++.+..+.+++|-+.+++.-|+++|+-.+.. ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455666666666777778888888888888888888888888777643 233344555554
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.87 E-value=11 Score=32.57 Aligned_cols=189 Identities=11% Similarity=0.062 Sum_probs=108.8
Q ss_pred CchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHh
Q 011323 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (488)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 104 (488)
+...+.....-+..|++=+|.+.+..+..+ +.+++++++|++++... ...+.+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~R----------------y~~~~~~~eAidlL~~g-----------a~~ll~ 65 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANR----------------YVRSKSYEHAIELISQG-----------ALSFLK 65 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHH----------------HHHhcCHHHHHHHHHHH-----------HHHHHH
Confidence 344555666667888888888887765543 34456677777775542 223445
Q ss_pred cCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHHcCCHh-HHHHHHHHH----HHcC--CCCCHHHHHHHHHHHH
Q 011323 105 SKDSEGAFQV----LRLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEM----VNAG--IEPNVHTYGALIDGCA 173 (488)
Q Consensus 105 ~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~ 173 (488)
.|+...|-++ .+...+.+++++......++..+.....-+ .-.++++.+ .+.| ..-++..+..+...|.
T Consensus 66 ~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~ 145 (312)
T 2wpv_A 66 AKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLL 145 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Confidence 5665555443 455556678888888887887776643211 122333333 3333 1236777888888889
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc---CCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCH
Q 011323 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS---GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (488)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (488)
+.+++.+|...|- .|-.-|...+..++--+... |...++- .+.-..++ .|.-.++.
T Consensus 146 ~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d----------------lf~~RaVL-~yL~l~n~ 204 (312)
T 2wpv_A 146 EGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVA----------------EFFSRLVF-NYLFISNI 204 (312)
T ss_dssp HTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHH----------------HHHHHHHH-HHHHTTBH
T ss_pred hcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchHH----------------HHHHHHHH-HHHHhcCH
Confidence 9999988887664 12111345555555444433 4333321 11222222 34456788
Q ss_pred HHHHHHHHHHH
Q 011323 251 DRAREVYKMIH 261 (488)
Q Consensus 251 ~~a~~~~~~~~ 261 (488)
..|..+++...
T Consensus 205 ~~A~~~~~~f~ 215 (312)
T 2wpv_A 205 SFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877554
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.22 E-value=4.6 Score=27.53 Aligned_cols=86 Identities=17% Similarity=0.097 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011323 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118 (488)
Q Consensus 39 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (488)
-..++|..+-+.+...+ . ......+-......+|++++|..+.+....||...|.++... +.|--+++..-+..+
T Consensus 20 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 36788888888887765 2 444444444455667889999999888888888888776543 567777777777677
Q ss_pred HHcCCCCCHHHH
Q 011323 119 QEAGLKADCKLY 130 (488)
Q Consensus 119 ~~~~~~~~~~~~ 130 (488)
...| .|....|
T Consensus 95 a~sg-~p~~q~F 105 (115)
T 2uwj_G 95 GGSS-DPALADF 105 (115)
T ss_dssp HTCS-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 4444444
No 255
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.01 E-value=0.00028 Score=63.60 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..|..+..+....++..+|++.|-+ ..|+..|..++....+.|.+++-.+.+....+. ..++..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 4566777777777777777665421 235566777788777778887777777655544 22444445777778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
++.++..+..+.+. .|+..-...+..-|...|.++.|.-+|..+
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 87777655433321 356666667777777777777776666554
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.71 E-value=1.3 Score=36.97 Aligned_cols=55 Identities=11% Similarity=0.213 Sum_probs=47.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (488)
+..+++.|++++|++....-++.. |.+......+.++++-.|+++.|.+-++...
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 567889999999999999999887 8888888889999888899999988877653
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.74 E-value=10 Score=28.10 Aligned_cols=71 Identities=6% Similarity=-0.052 Sum_probs=47.7
Q ss_pred CccHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 011323 336 SVGIISYSSLMGACSNAKNW---QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 408 (488)
.|+..+-..+..++.++.+. .+++.+++.+.+.+........-.+.-++.+.|++++|.+..+.+++. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 56666666677777776653 467777777766432223344455667888888888888888888873 564
No 258
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.62 E-value=7.6 Score=26.54 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=23.7
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
+...|++++|..+.+.+. .||...|.+|.. .+.|..+++...+..+...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555555444332 455555544433 24455555555554444444
No 259
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.61 E-value=7.6 Score=26.54 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011323 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118 (488)
Q Consensus 39 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (488)
-..++|..+-+.+...+ . ......+-......+|++++|..+.+....||...|.++... +.|--+++..-+..+
T Consensus 21 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 36678888888777765 2 333333444445567888888888888888888887766554 446666666666666
Q ss_pred HHcCCCCCHHHH
Q 011323 119 QEAGLKADCKLY 130 (488)
Q Consensus 119 ~~~~~~~~~~~~ 130 (488)
...| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 6555 4444333
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.11 E-value=7.1 Score=26.63 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=24.3
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
.+...|++++|..+.+.+. .||...|.+|.. .+.|..+++...+..+...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3344555555554443332 455555544433 34455555555554554444
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.92 E-value=8.2 Score=29.48 Aligned_cols=120 Identities=7% Similarity=-0.015 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CCCCHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKAD-------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVH 163 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 163 (488)
++..-++.+...+.++.|+-+.+.+.... ..|+ ..++..+.+++...|++.+|...|++.++.. +..+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444556667777777777766644221 1222 1245566677777888888888887754321 111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
++..+. ....... ......+...-..+..+|.+.+++++|+.+++.+...
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 111110 0000000 0111233444455777778888888888888776543
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.11 E-value=30 Score=31.55 Aligned_cols=97 Identities=12% Similarity=-0.038 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHh---CCCCCCHHHH--H
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTK---KGVIPDEVFL--S 308 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~--~ 308 (488)
+...+...|.+.|+++.|.+.+..+......+ -...+-.++..+...+++..+...+.+... .+..|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44556666667777777777776665542221 234555666666667777777766666543 2222222110 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 309 ALIDFAGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 309 ~l~~~~~~~g~~~~a~~~~~~~~~ 332 (488)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123345777777777666543
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.87 E-value=38 Score=32.60 Aligned_cols=80 Identities=19% Similarity=0.137 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 011323 62 VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (488)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (488)
.+.........+.+++...+.++.. ++.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3333344444446677777776666 44555555556666777777777766666665554 334455556666666555
Q ss_pred CH
Q 011323 142 KV 143 (488)
Q Consensus 142 ~~ 143 (488)
.+
T Consensus 151 ~l 152 (618)
T 1qsa_A 151 KQ 152 (618)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.52 E-value=5.9 Score=30.26 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMER 53 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~ 53 (488)
+...+.+..+|+|..|...|.+.++
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4445667799999999999999754
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.93 E-value=6.7 Score=32.76 Aligned_cols=118 Identities=17% Similarity=0.183 Sum_probs=77.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhhc
Q 011323 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI----TYSILLVACERK 422 (488)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~ 422 (488)
....+.|++++++.....-++.. +-|...-..++..+|-.|++++|.+-++...+. .|+.. +|..+|.+-.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE~-- 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQ-- 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHHH--
Confidence 44668899999999888877765 667888888999999999999999999888763 45533 4444443321
Q ss_pred CCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHhh----cHHHHHHHHHHhhhccCCCCc
Q 011323 423 DDVEVGLMLLSQAKEDGV-----IPNLVMFKCIIGMCSR----RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 423 g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~----~~~~a~~~~~~~~~~~~~~~~ 477 (488)
.=.++..-+- .....-...++.+... +.++|.++.+.+....|..+-
T Consensus 80 --------~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 --------ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp --------HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred --------HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1112222211 1222344455555442 789999998888766554443
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.57 E-value=9.6 Score=34.86 Aligned_cols=99 Identities=11% Similarity=-0.019 Sum_probs=45.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHH--HH
Q 011323 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY---NIKGTPEV--YT 273 (488)
Q Consensus 199 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~~ 273 (488)
+...+...|.+.|+++.|.+.+.++.....+...-...+...++.+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 33444555555555555555555554432121122233444555555556666665555554322 11111110 01
Q ss_pred HHHHHHHccCChHHHHHHHHHHHh
Q 011323 274 IAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111223445777777777766544
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.55 E-value=21 Score=28.24 Aligned_cols=56 Identities=5% Similarity=0.054 Sum_probs=35.7
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC
Q 011323 106 KDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 161 (488)
+....+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+..|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 335567777777776665443 34566666666677777777777777766655553
No 268
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.12 E-value=76 Score=32.27 Aligned_cols=85 Identities=13% Similarity=0.274 Sum_probs=49.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCc------------h-HHHHHHHHHHHh--------hhHHHHHHHHHhhhCCCCC
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDM------------D-KVYHARFFNVCK--------SQKAIKEAFRFFKLVPNPT 91 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~------------~-~~~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~ 91 (488)
...++.|.+.+|+.+.-++.+.+..+. + ..+...+...+. +..=++.+.++|.+...|
T Consensus 153 ~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~~~~- 231 (963)
T 4ady_A 153 EKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNMPNC- 231 (963)
T ss_dssp HHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSSSC-
T ss_pred HHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhCCch-
Confidence 344589999999888876654332110 0 111111112111 123345566667666544
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQE 120 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 120 (488)
-|..+++...+.++.+.+.++|..+..
T Consensus 232 --dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 --DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred --hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355566777788899999999998764
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.10 E-value=6.1 Score=31.29 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=30.4
Q ss_pred hHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC
Q 011323 28 QLHSYNRLIRQ---GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (488)
Q Consensus 28 ~~~~~~~l~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (488)
++..|-.+++. +...++.++|..|...++....+.++...+..+-..|++.+|.++|+..
T Consensus 79 YLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 79 FLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44445444432 2245555555555555554445555555555555555555555555443
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.00 E-value=65 Score=31.01 Aligned_cols=377 Identities=8% Similarity=0.004 Sum_probs=194.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC-C-CHHHHHHHHHHHHhcC
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-P-TLSTFNMLMSVCASSK 106 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~~ 106 (488)
+......++.|+.+.+.++...+.. + |-...+-...+..-.......+...+++..+. | ....-+.-+..+.+.+
T Consensus 10 ~~~a~~a~~~~~~~~~~~l~~~l~~-~--pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~ 86 (618)
T 1qsa_A 10 YAQIKQAWDNRQMDVVEQMMPGLKD-Y--PLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRE 86 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHSGGGTT-S--TTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcC-C--CcHHHHHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCC
Confidence 3444556688999888888666532 2 33222221122111122246677777777652 2 2233345566777788
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHH
Q 011323 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA--KAFGA 184 (488)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~ 184 (488)
++...+..+.. .+.+...-.....+....|+..+|......+=..| ......+..++..+.+.|.+. ....=
T Consensus 87 ~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R 160 (618)
T 1qsa_A 87 DWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLER 160 (618)
T ss_dssp CHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred CHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 88776664432 24455555556677778888777777666655444 334556667777777655432 23333
Q ss_pred HHHHHhCC-----------CCCCHhH-HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcc---hHHHHHHHHHhcCC
Q 011323 185 YGIMRSKN-----------VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI---TIGALMKACANAGQ 249 (488)
Q Consensus 185 ~~~~~~~~-----------~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 249 (488)
++.+...| ++++... ...++..+.+- ..+...... ..++.. .+...+.-+.+ .+
T Consensus 161 ~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~-------~~~~~~~~~~~~~~~~rlar-~d 229 (618)
T 1qsa_A 161 IRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFART-------TGATDFTRQMAAVAFASVAR-QD 229 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHH-------SCCCHHHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhc-------cCCChhhHHHHHHHHHHHHh-cC
Confidence 33333332 1111111 11111111111 111111111 011111 11112222333 47
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011323 250 VDRAREVYKMIHKYNIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (488)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 325 (488)
.+.|...+....+.. ..+.... ..+.......+...++...+....... ++.......+....+.|+++.|..
T Consensus 230 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 230 AENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 888988888876544 2333332 223333344453445566666554432 344444455555567799999999
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCCC-------C---HH-----HHH
Q 011323 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI------------KLKP-------T---VS-----TMN 378 (488)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~~-------~---~~-----~~~ 378 (488)
.|..|.... .......--+.+++...|+.++|..+|+.+.+. |.++ + .. .-.
T Consensus 307 ~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ 385 (618)
T 1qsa_A 307 WLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEM 385 (618)
T ss_dssp HHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHH
T ss_pred HHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHH
Confidence 998876532 223444556677788889999999988877541 1110 0 00 011
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 432 (488)
.-+..+...|....|...|..+.+. . +......+.......|.++.++...
T Consensus 386 ~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 386 ARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHH
Confidence 2234566777778887777776653 2 2233334444445566666655444
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.05 E-value=61 Score=28.21 Aligned_cols=166 Identities=11% Similarity=0.098 Sum_probs=85.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHCCCCccHHHHHHHH
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE----ILQEAKNQGISVGIISYSSLM 346 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 346 (488)
+|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-+ +++-+.+.+++++......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555566777777777776543211 1222333333222 233444455666666666666
Q ss_pred HHHHhcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 347 GACSNAKNWQ-KALELYEHMK----SIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 347 ~~~~~~g~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
..+.....-+ .-.++.++++ +.| ..-++.....+...|.+.+++.+|...|- . |-.++...+..++..+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6655443211 1122233322 111 23456677778888888888888887772 2 3344556666555554
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH-HHhhcHHHHHHHHHHhh
Q 011323 420 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSRRYEKARTLNEHVL 469 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~a~~~~~~~~ 469 (488)
...+... .++.....+++. .|.++...|..+.+...
T Consensus 178 ~~~~~~~--------------e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 178 YKQDESH--------------TAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTSCGG--------------GHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCc--------------cHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4443321 234444444443 33346666666554443
No 272
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=66.96 E-value=71 Score=28.61 Aligned_cols=242 Identities=9% Similarity=0.003 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---cchHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHHH-
Q 011323 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANA-GQVDRAREVYKMIHKYNIKGTPEVY- 272 (488)
Q Consensus 198 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 272 (488)
.....+...|.+.|+.++..+++.....-... -+. ......++..+... +..+.-.++.....+.... ...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSS-ISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGG-SCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 56677889999999999999999887542111 111 12245666666654 3344444444444332111 11122
Q ss_pred -----HHHHHHHHccCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCccHH
Q 011323 273 -----TIAINCCSQTGDWEFACSVYDDMTKK--GVIPD---EVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GISVGII 340 (488)
Q Consensus 273 -----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 340 (488)
.-++..|...|++.+|.+++.++.+. ..... ...+..-+..|...+++..+...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25788899999999999999888763 22111 234556677888899999999999877543 2223443
Q ss_pred HHHHH----HHHHH-hcCCHHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHcCCChhHHHHHHH-HH-HhCCCC
Q 011323 341 SYSSL----MGACS-NAKNWQKALELYEHMKS----IKLKPT---VSTMNALITALCDGDQLPKTMEVLS-DM-KSLGLC 406 (488)
Q Consensus 341 ~~~~l----~~~~~-~~g~~~~a~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~-~~-~~~~~~ 406 (488)
....+ ...+. ..+++..|...|-+..+ .+ .|. ...|..+ .+.. .++..+.-.++. .. ... ..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlvL-~aLl-~~~r~el~~~l~~~~~~~~-~~ 253 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYMLL-CKIM-LGQSDDVNQLVSGKLAITY-SG 253 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH-HHHH-TTCGGGHHHHHHSHHHHTT-CS
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHHH-HHHH-cCCHHHHHHHhcccccccc-CC
Confidence 33222 23345 78899999887766532 11 111 1123222 2222 333334333332 21 222 34
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHH
Q 011323 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (488)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 447 (488)
|....+..++.++ ..+++.+...+++.... .+..|....
T Consensus 254 pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~ 292 (394)
T 3txn_A 254 RDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQ 292 (394)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHH
T ss_pred ccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHH
Confidence 5565666666665 56677777776665433 355566543
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=66.24 E-value=45 Score=26.08 Aligned_cols=112 Identities=12% Similarity=0.051 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
.++.......+..+...+..+....+.+ +.. .++...-...+.+++..++.+.. ..+..+.. .++...-...
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a 96 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSA 96 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHH
Confidence 4555555555555555554333322222 222 33444545555555555554322 22222222 3455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
+.++.+.++.+ +...+..+.. .++...-...+.++.+.++
T Consensus 97 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 97 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCC
Confidence 55555555533 2222222322 2344444445555555444
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.64 E-value=48 Score=26.18 Aligned_cols=171 Identities=16% Similarity=0.085 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011323 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (488)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 169 (488)
++...-...+..+.+.+..+ +...+..+.. .++...-...+.++...++.+. ...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 44444444444444444422 2222222222 2344444444555555554322 222222221 34445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCC
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (488)
.++.+.++.+ +...+..+.. .++...-...+.++...|+.+ +...+..+.. .++...-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK-----DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-----CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-----CCCHHHHHHHHHHHHHhCc
Confidence 5555555433 2233333332 344445455555555555432 3333333332 2333344444555555555
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011323 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (488)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (488)
. .+...+..+.+. +++.+-...+.++.+.
T Consensus 173 ~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 173 E-RVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp H-HHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred h-hHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 3 333444444332 2344444444444443
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.23 E-value=41 Score=25.24 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC
Q 011323 111 AFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160 (488)
Q Consensus 111 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 160 (488)
+.++|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5666666666554433 3345555666666666666666666666655454
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=59.15 E-value=51 Score=26.55 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=13.3
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCC
Q 011323 135 TTCAKSGKVDAMFEVFHEMVNAGIE 159 (488)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~ 159 (488)
...+..|+.+.+..+++.+.+.|..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3345556666665555555554433
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.92 E-value=58 Score=24.83 Aligned_cols=54 Identities=11% Similarity=0.252 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH
Q 011323 110 GAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVH 163 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 163 (488)
.+.++|..|..+|+-.. ...|......+...|++.+|.++|..-++.+..|...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 35566666666665433 3355556666666667777777776666665555443
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=58.90 E-value=65 Score=25.40 Aligned_cols=170 Identities=15% Similarity=0.071 Sum_probs=71.2
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011323 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (488)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 204 (488)
++...-...+..+.+.++.+ +...+..+.. .++...-...+.++...++.+ +...+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34444444555555555532 2222222222 334444445555555555432 2222222222 24444555555
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
.++.+.|+.+ +...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK-----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT-----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 5555555432 2233333332 233334444445555555433 2222322322 2344555555555555554
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (488)
. .+...+..+... ++..+-...+.++..
T Consensus 173 ~-~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 173 E-RVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp H-HHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred h-hHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 2 333444444332 244444444444433
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.73 E-value=55 Score=24.55 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH
Q 011323 391 PKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 445 (488)
+++..+|..|...|+--. ...|......+...|++++|.++|+.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 347778888877766444 5567777777788888888888888888777777543
No 280
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=57.67 E-value=88 Score=26.85 Aligned_cols=65 Identities=20% Similarity=0.308 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHhCCCCC
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIP 302 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 302 (488)
...++.-|...|+.++|.+.++.+...... ...+...+..++-+.++ .+....++..+.+.|+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 345566666677777777777666422111 11233333333333322 334556666666555543
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.50 E-value=10 Score=30.55 Aligned_cols=44 Identities=11% Similarity=0.220 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 011323 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86 (488)
Q Consensus 43 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 86 (488)
.+.++|..|...++....+.++...+..+-..|++.+|.++|+.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555544444444444444444444444444444443
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.66 E-value=84 Score=25.38 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011323 145 AMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (488)
Q Consensus 145 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (488)
...++|..|...|+-- -...|......+-..|++.+|..+|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444455554444322 23344444444445555555555555544443333
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.63 E-value=85 Score=25.66 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=14.3
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHH
Q 011323 196 DRVVFNALITACGQSGAVDRAFDVLAE 222 (488)
Q Consensus 196 ~~~~~~~ll~~~~~~g~~~~a~~~~~~ 222 (488)
+.......+..+.+.|+.++|.++|-+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 344444455555555666666555544
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.10 E-value=67 Score=23.23 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=12.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 011323 273 TIAINCCSQTGDWEFACSVYDDMT 296 (488)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~~~ 296 (488)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555555553
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.52 E-value=1.1e+02 Score=25.08 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=53.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEA--GLKA----DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
-++.+....++++|.+++++..+. +.++ ........+..-.....-.-+..+.+.+. . .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHHH
Confidence 356778888889888888766531 2221 11222233333333333334445555553 2 4456666777788
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011323 172 CAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~ 189 (488)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 889999999998887654
No 286
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=47.59 E-value=1.4e+02 Score=25.75 Aligned_cols=25 Identities=12% Similarity=-0.088 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 303 DEVFLSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 303 ~~~~~~~l~~~~~~~g~~~~a~~~~ 327 (488)
++.....+...|.+.|++.+|...|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 4455555555666666665555444
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.39 E-value=58 Score=30.33 Aligned_cols=61 Identities=8% Similarity=0.051 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----H--HH-HHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----C--KL-YTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~--~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
..+|.+++.|...+.++.|..+..+.. .+.+ . .. +--+...+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356666677777777777777666553 1111 1 11 112334445556666666666665543
No 288
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=46.56 E-value=98 Score=23.81 Aligned_cols=155 Identities=13% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCcch---------------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 011323 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (488)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 270 (488)
+|-+..++..|...++.+......-.||... ++.+...+...|+.++|...+..--...+-.++.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (488)
--..+-+---...+.+.....=++-.+..-..|...+..+++- ...++..+.-+.............|.
T Consensus 151 EnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~-----------~~ikkY~n~iPGiGSY~va~aa~~yf 219 (242)
T 3kae_A 151 ENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSP-----------SLVKKYMEHVPGIGSYFISNAARRYF 219 (242)
T ss_dssp HHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCH-----------HHHHHHHTSTTTHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccH-----------HHHHHHHHhCCCchhHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHHHHHhCCCC
Q 011323 351 NAKNWQKALELYEHMKSIKLK 371 (488)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~ 371 (488)
..|..++...+|..+++.+..
T Consensus 220 ~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 220 NLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT
T ss_pred hcccchhHHHHHHHHHhcCCC
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=44.57 E-value=1.7e+02 Score=26.13 Aligned_cols=224 Identities=14% Similarity=0.030 Sum_probs=106.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHH--
Q 011323 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTPEVYTI-- 274 (488)
Q Consensus 202 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~-- 274 (488)
-++..|...|++.+|.+++.++...-...... ...+..-++.|...+++.++...+...... .+.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 45666777777777777776665532221111 112444456677778888877777655432 12233333222
Q ss_pred --HHHHHH-ccCChHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCccHHHHHH
Q 011323 275 --AINCCS-QTGDWEFACSVYDDMTKKGVIPD------EVFLSALIDFAGHAGKVEAAFEILQ-EAKNQGISVGIISYSS 344 (488)
Q Consensus 275 --l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~ 344 (488)
-.-.+. ..++|..|...|-+..+.-.... ...|..+.... .++..+...++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 122344 67778777776655432100111 12232222222 222222222221 1111112455556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 424 (488)
++.+| ..+++.....+++.... .+..|......+-..+-+ --...+.++.+ +-+..++..+...+.- .
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i~~---pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDT-----MLEQNLCRIIE---PYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHH-----HHHHHHHHHHT---TCSEEEHHHHHHHHTC--C
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHH-----HHHHHHHHHhH---hhceeeHHHHHHHHCc--C
Confidence 66654 56677776666665432 234454422111000000 00111122221 2345566666666543 5
Q ss_pred HHHHHHHHHHHHHcC
Q 011323 425 VEVGLMLLSQAKEDG 439 (488)
Q Consensus 425 ~~~a~~~~~~~~~~~ 439 (488)
.++++..+-+|+..|
T Consensus 330 ~~evE~~L~~lI~dg 344 (394)
T 3txn_A 330 MPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 778888888887664
No 290
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.93 E-value=41 Score=26.22 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=7.2
Q ss_pred HccCCHHHHHHHHHH
Q 011323 208 GQSGAVDRAFDVLAE 222 (488)
Q Consensus 208 ~~~g~~~~a~~~~~~ 222 (488)
+..|+.+-+..+++.
T Consensus 80 ~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 80 GAQGRTEILAYMLKH 94 (201)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 345555554444433
No 291
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=43.17 E-value=1.7e+02 Score=25.70 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=35.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCccH
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK--VEAAFEILQEAKNQGISVGI 339 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~ 339 (488)
...++.-|...++.++|.+.++++...... ...+...+..+.-+.++ .+....++..+...|+-...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 456666677777777777777776532221 12333334444443322 34456666666666544333
No 292
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=43.09 E-value=54 Score=19.83 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=21.9
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHHCCCCCchH
Q 011323 31 SYNRLIR-QGRISECIDLLEDMERKGLLDMDK 61 (488)
Q Consensus 31 ~~~~l~~-~g~~~~A~~~~~~~~~~~~~~~~~ 61 (488)
+...|-. +-+++.|+..|.++...+-.|+++
T Consensus 25 s~~cL~~~~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 25 SQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 3344443 459999999999998777666654
No 293
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.00 E-value=58 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=12.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHH
Q 011323 273 TIAINCCSQTGDWEFACSVYDDMT 296 (488)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~~~ 296 (488)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344455555555555555555543
No 294
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=42.92 E-value=47 Score=27.59 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=4.0
Q ss_pred HHHHcCCHh
Q 011323 136 TCAKSGKVD 144 (488)
Q Consensus 136 ~~~~~~~~~ 144 (488)
..++.|+.+
T Consensus 11 ~A~~~g~~~ 19 (285)
T 1wdy_A 11 KAVQNEDVD 19 (285)
T ss_dssp HHHHTTCHH
T ss_pred HHHHcCCHH
Confidence 334445543
No 295
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.66 E-value=1.8e+02 Score=25.65 Aligned_cols=70 Identities=7% Similarity=0.051 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC--hhHHHHHHHHHHhCCCCCCHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ--LPKTMEVLSDMKSLGLCPNTIT 411 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~~~ 411 (488)
....++.-|...|+.++|...++++..-.. ........+..++-+.++ .+...+++..+...|+-+....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 356777788888888888888888753111 112334444555555433 3456677777776665444333
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=42.22 E-value=1.1e+02 Score=22.99 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=14.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHh
Q 011323 201 NALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 201 ~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
..++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555666666666666666653
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.67 E-value=91 Score=24.96 Aligned_cols=11 Identities=9% Similarity=0.314 Sum_probs=4.1
Q ss_pred cCCHHHHHHHH
Q 011323 210 SGAVDRAFDVL 220 (488)
Q Consensus 210 ~g~~~~a~~~~ 220 (488)
.|+.+.+..++
T Consensus 19 ~g~~~~v~~Ll 29 (241)
T 1k1a_A 19 QGNLPAVHRLV 29 (241)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 34433333333
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=40.74 E-value=1.3e+02 Score=23.69 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=15.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (488)
.+++.|+-.+-+|++.| .|....-..++.+..
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsE 59 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYE 59 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 45555555555555555 443333333333333
No 299
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=40.08 E-value=1.1e+02 Score=22.69 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=24.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 011323 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (488)
+.+.|..++. --..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444322 223333344444444455555555555444444444333344444433
No 300
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.24 E-value=1.4e+02 Score=23.51 Aligned_cols=33 Identities=18% Similarity=-0.045 Sum_probs=17.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (488)
.+++.|+-.+-+|++.|..|....-..++.+..
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 556666666666666665544444444444433
No 301
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.24 E-value=1.2e+02 Score=22.36 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=37.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011323 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (488)
+.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34556676655432 234445555566667778888877766555666666666777766654
No 302
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=36.84 E-value=99 Score=27.88 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=7.8
Q ss_pred HHHhcCCHHHHHHHHH
Q 011323 171 GCAKAGQVAKAFGAYG 186 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~ 186 (488)
..+..|+.+-+..+++
T Consensus 119 ~A~~~g~~~~v~~Ll~ 134 (437)
T 1n11_A 119 IAAREGHVETVLALLE 134 (437)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3344566555444443
No 303
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=36.12 E-value=91 Score=25.74 Aligned_cols=13 Identities=8% Similarity=0.112 Sum_probs=5.9
Q ss_pred HHHHHhcCChhHH
Q 011323 99 MSVCASSKDSEGA 111 (488)
Q Consensus 99 ~~~~~~~~~~~~a 111 (488)
+...++.|+.+..
T Consensus 9 L~~A~~~g~~~~v 21 (285)
T 1wdy_A 9 LIKAVQNEDVDLV 21 (285)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHH
Confidence 3334455555433
No 304
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=36.06 E-value=1.1e+02 Score=22.22 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=24.4
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 011323 296 TKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (488)
.+.|..++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 10 ~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 10 RKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3445444332 222333333333 44455555555555544444444333344444333
No 305
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.52 E-value=1.6e+02 Score=27.56 Aligned_cols=65 Identities=8% Similarity=-0.007 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--hHHH-HHHHHHHccCCHHHHHHHHHHHhhC
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPDR--VVFN-ALITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
...+|.+++.|...+.++.|..+..+..--.. .++. ..|. .+.+.+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45688899999999999999999988741100 1111 1222 2445667788999999988887654
No 306
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.36 E-value=3.2e+02 Score=28.04 Aligned_cols=131 Identities=8% Similarity=0.047 Sum_probs=68.8
Q ss_pred HHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 011323 67 FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146 (488)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 146 (488)
++..+...|..+-|.++....+. ++..--.+..+|...|++++|.+.|++.- .|+..+...... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 34445555666666666665553 33333345567777788888888776643 222211100000 0001
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hHHHHHHHHHHccC
Q 011323 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSG 211 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g 211 (488)
..++.... . ......-|..++..+-+.+.++.+.+.-+..++.--..|. ..|+.++++.+..|
T Consensus 884 ~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11111110 0 0112336788888888999988888887777754222222 35666666665544
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.16 E-value=3.7e+02 Score=27.53 Aligned_cols=128 Identities=13% Similarity=0.034 Sum_probs=76.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHhcCC
Q 011323 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---TLSTFNMLMSVCASSKD 107 (488)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 107 (488)
....|...|.++-|.++... .|.++....+++..+...|+.++|...|+++... +..... .
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~----------~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA----------V 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG----------G
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc----------c
Confidence 45566677777766654322 2455555678889999999999999999987521 000000 0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcC
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAG 176 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 176 (488)
......++.... . ......-|..++..+-+.+.++.+.++-+..++.--..|. ..|+.++++.+..|
T Consensus 880 ~~~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 LREFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp GHHHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011111221111 0 0112347888888888899998888888887764222232 35677777776554
No 308
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.91 E-value=51 Score=26.45 Aligned_cols=8 Identities=25% Similarity=0.306 Sum_probs=3.4
Q ss_pred HHhcCCHH
Q 011323 244 CANAGQVD 251 (488)
Q Consensus 244 ~~~~~~~~ 251 (488)
.+..|+.+
T Consensus 184 A~~~~~~~ 191 (240)
T 3eu9_A 184 AVLAGNTT 191 (240)
T ss_dssp HHHHTCHH
T ss_pred HHHcCCHH
Confidence 33444443
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.79 E-value=1.4e+02 Score=22.18 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=32.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011323 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (488)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 345556544432 2234445555555666777777776665555555555556666665543
No 310
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.51 E-value=1.7e+02 Score=23.24 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=17.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (488)
.+++.|+-.+-+|++.|..|....-..++.+..
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~AsE 81 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISACE 81 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 456666666666666655544444444444433
No 311
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.80 E-value=1.2e+02 Score=22.55 Aligned_cols=35 Identities=14% Similarity=0.239 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 011323 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (488)
..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555544444444433444444444
No 312
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=33.67 E-value=95 Score=19.92 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=25.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 118 VQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 444554444333 22333333332 34445555555555443444444444444444443
No 313
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.11 E-value=99 Score=22.84 Aligned_cols=57 Identities=9% Similarity=0.099 Sum_probs=24.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 011323 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (488)
+.+.|..++.. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 10 L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 33445554432 222333333333 4455556665555544444444333344444433
No 314
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.01 E-value=1.2e+02 Score=22.94 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=36.5
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCH
Q 011323 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA--GIEPNVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 178 (488)
.+.+.|++.+.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 23 ~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 23 ILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344566665543 334555555666667777777777765 5555665555556666666643
No 315
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.55 E-value=2.4e+02 Score=24.18 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHH
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMV 154 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (488)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4567788888888888888888764
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.51 E-value=1.2e+02 Score=22.36 Aligned_cols=60 Identities=7% Similarity=0.084 Sum_probs=37.4
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
+.+.+.|.++++. -..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3455667666643 334445555555 56788888888887766676666555555555553
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.12 E-value=1.6e+02 Score=21.92 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=39.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
+.+.+.|...++. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3455667666643 344555565555 666788999988887776677666666666665554
No 318
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.83 E-value=1.5e+02 Score=21.54 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=38.2
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 259 MIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
.+.+.|.+.++. -..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 355567666643 344555666665 667788899888887776677666656666555543
No 319
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=31.39 E-value=43 Score=20.27 Aligned_cols=29 Identities=7% Similarity=-0.008 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (488)
++|.+.|.+|++..-.++..+|...+...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555555554333233444555555555
No 320
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=31.04 E-value=96 Score=19.20 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011323 131 TTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (488)
Q Consensus 131 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 173 (488)
+.++..+++..-.+.++-.+++..+.| ..+..+|---.+.++
T Consensus 6 ~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 6 NQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 334444444444444444444444444 234444443333333
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.82 E-value=1.6e+02 Score=21.66 Aligned_cols=39 Identities=5% Similarity=-0.022 Sum_probs=18.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 011323 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (488)
..+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 33 ~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 33 NSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred hCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 333444455555555544444444444444444444443
No 322
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.78 E-value=67 Score=26.32 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=15.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKAD 126 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~ 126 (488)
..++.|+.+....+++.+.+.|..++
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 34456677766666666665554444
No 323
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.16 E-value=1.2e+02 Score=25.39 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=7.7
Q ss_pred HHHHHHHhCCCCCCHH
Q 011323 395 EVLSDMKSLGLCPNTI 410 (488)
Q Consensus 395 ~~~~~~~~~~~~p~~~ 410 (488)
++++.+.+.|..|+..
T Consensus 209 ~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 209 EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHTTSCBCSTTT
T ss_pred HHHHHHHHcCCCCCCC
Confidence 3444445555555543
No 324
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.01 E-value=1.3e+02 Score=22.72 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=17.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCccHHHHHHHHHHHHhcC
Q 011323 311 IDFAGHAGKVEAAFEILQEAKNQ--GISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 311 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g 353 (488)
+..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|
T Consensus 39 L~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 39 LKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 33333334444444455444443 33333333333334444444
No 325
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.56 E-value=1.9e+02 Score=21.88 Aligned_cols=50 Identities=6% Similarity=-0.014 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCc--cHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHH
Q 011323 317 AGKVEAAFEILQEAKNQGISV--GIISYSSLMG-A-----CSNAKNWQKALELYEHMK 366 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~ 366 (488)
.|++-+|.++++.+-.....+ ....|..||. . ..+.|+...|..++.+..
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 366666666666665543333 3344444444 1 234566666666666554
No 326
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=28.55 E-value=3.4e+02 Score=24.73 Aligned_cols=38 Identities=18% Similarity=0.080 Sum_probs=19.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 011323 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (488)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 388 (488)
+.++.+.|...+.+|.+.|..|....-..+..+....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence 34566666666666666664443333333333433333
No 327
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.47 E-value=83 Score=21.31 Aligned_cols=37 Identities=8% Similarity=0.028 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHH
Q 011323 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (488)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 111 (488)
...+.|.+++..++...+.+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4677788888888777777788888887766665544
No 328
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.45 E-value=24 Score=29.20 Aligned_cols=56 Identities=11% Similarity=0.022 Sum_probs=35.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--hcCCHHHHHHHHHHHH
Q 011323 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT-------YGALIDGCA--KAGQVAKAFGAYGIMR 189 (488)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~~ 189 (488)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 4455678999988888888877766555332 233433332 5677776766666543
No 329
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=26.41 E-value=1.5e+02 Score=19.98 Aligned_cols=16 Identities=19% Similarity=0.221 Sum_probs=7.3
Q ss_pred HHcCCChhHHHHHHHH
Q 011323 384 LCDGDQLPKTMEVLSD 399 (488)
Q Consensus 384 ~~~~~~~~~a~~~~~~ 399 (488)
|...++.+...+++..
T Consensus 20 ~f~~~n~~~m~~~L~p 35 (94)
T 3fap_B 20 YFGERNVKGMFEVLEP 35 (94)
T ss_dssp HHTTCCHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHH
Confidence 4444444444444443
No 330
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.92 E-value=51 Score=26.42 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=6.6
Q ss_pred HhhcCCHHHHHHHHH
Q 011323 419 CERKDDVEVGLMLLS 433 (488)
Q Consensus 419 ~~~~g~~~~a~~~~~ 433 (488)
..+.|+.+-+..+++
T Consensus 217 A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 217 AKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHH
Confidence 344455444444433
No 331
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.88 E-value=2.3e+02 Score=21.78 Aligned_cols=63 Identities=8% Similarity=0.092 Sum_probs=28.6
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCC
Q 011323 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVH---TYGALIDGCAK-AGQVAKAFGAYGIMRSKNVKPD 196 (488)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~ 196 (488)
+...+..|+.+.-.++.+.+++.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 333444555555555666666666554432 12222222211 2233444555555666655444
No 332
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.59 E-value=1.3e+02 Score=21.64 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=15.3
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
.+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444444444444433333333333344444433
No 333
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.32 E-value=1.9e+02 Score=25.04 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011323 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (488)
Q Consensus 201 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (488)
...+...+..|+.+-+..+++. +..+......-.+.+...+..|+. ++++.+.+.+..++...-...+...+
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~----g~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~g~t~L~~A~ 92 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIET----GVSPTIQNRFGCTALHLACKFGCV----DTAKYLASVGEVHSLWHGQKPIHLAV 92 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHHHHCCH----HHHHHHHHHCCCCCCBTTBCHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHc----CCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCccccCCCCHHHHHH
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHH-------------------HHHHHHHHhcC--CHHHHHHHHHHHHHCCCCccH
Q 011323 281 QTGDWEFACSVYDDMTKKGVIPDEVFL-------------------SALIDFAGHAG--KVEAAFEILQEAKNQGISVGI 339 (488)
Q Consensus 281 ~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~ 339 (488)
..|+.+-+..+++.....|..++.... .+.+...+..| +.+-+..+++. ...+....
T Consensus 93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~~d 170 (364)
T 3ljn_A 93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTAKD 170 (364)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTCCC
T ss_pred HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCcccC
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKS-----IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITY 412 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~ 412 (488)
..-.+.+...+..|+.+-+..+++.-.. .+ ..+..-.+.|..+..... .++++.+++.|..++ ...-
T Consensus 171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~gad~~~~d~~g 244 (364)
T 3ljn_A 171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHLHWAILINW-----EDVAMRFVEMGIDVNMEDNEH 244 (364)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-CCCTTCCCTTHHHHTTTC-----HHHHHHHHTTTCCTTCCCTTS
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhccccccccccc-ccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCC
Q ss_pred HHHHHHHhhcCCHHHHHHHHHH
Q 011323 413 SILLVACERKDDVEVGLMLLSQ 434 (488)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~ 434 (488)
..-+...+..|+.+-+..+++.
T Consensus 245 ~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 245 TVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp CCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHhChHHHHHHHHHc
No 334
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.01 E-value=1.2e+02 Score=22.14 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=18.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333333344445555555544443344444434444444444
No 335
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.94 E-value=4.1e+02 Score=24.44 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
..+.+-|.++- .+.|++.-...|..-.+.+...|++++|-++--...+. +--+..|++.+-.+=...|+..-.+.+
T Consensus 342 l~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 34455444332 33344444555655566666677777766665544332 222555554444433334555555555
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (488)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 361 (488)
|..+.+.| ..+..----+++.-...|+.+-..+.
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHH
Confidence 55555554 33333222333333444444444333
No 336
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.89 E-value=2.9e+02 Score=22.72 Aligned_cols=50 Identities=14% Similarity=-0.000 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 160 PNVHTYGALIDGCAKAGQ-----VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
++..+-...+.++...+. ...+...+..+.. .++..+-...+.++...|+
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCC
Confidence 444444444444444331 2233333333332 3455554555555555554
No 337
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.71 E-value=1.2e+02 Score=23.36 Aligned_cols=15 Identities=7% Similarity=0.087 Sum_probs=7.0
Q ss_pred HHHhcCCHHHHHHHH
Q 011323 243 ACANAGQVDRAREVY 257 (488)
Q Consensus 243 ~~~~~~~~~~a~~~~ 257 (488)
..+..|+.+-+..++
T Consensus 78 ~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 78 YAGAQGRTEILAYML 92 (201)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 334455555444444
No 338
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.56 E-value=1.7e+02 Score=19.67 Aligned_cols=12 Identities=8% Similarity=0.288 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 011323 321 EAAFEILQEAKN 332 (488)
Q Consensus 321 ~~a~~~~~~~~~ 332 (488)
+.|.+++..+..
T Consensus 54 ~~ar~Lld~L~~ 65 (97)
T 3ygs_P 54 DQARQLIIDLET 65 (97)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 339
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A {Mus musculus}
Probab=23.42 E-value=2.5e+02 Score=23.01 Aligned_cols=56 Identities=14% Similarity=0.009 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCCcccc
Q 011323 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 480 (488)
Q Consensus 425 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 480 (488)
++.|.+.+.++.....+++...|..-+......++++..++..+-.|.+...-+++
T Consensus 37 F~~a~~~~~~le~~~~~~~S~~~Q~~v~~~i~~le~~~~~v~~l~LFS~NE~leDI 92 (243)
T 3qc1_A 37 FETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEI 92 (243)
T ss_dssp HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHHHHHHHHHHTTTCSSSCSTTS
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccc
Confidence 56677777777766555677777776665555688999999998888877766543
No 340
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.20 E-value=1.3e+02 Score=18.19 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=5.2
Q ss_pred CCHHHHHHHHHHH
Q 011323 211 GAVDRAFDVLAEM 223 (488)
Q Consensus 211 g~~~~a~~~~~~~ 223 (488)
|+++.|+..+-+|
T Consensus 37 gdvd~aI~~LL~m 49 (59)
T 1wgl_A 37 GNKDAAINSLLQM 49 (59)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 3344444443333
No 341
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=23.08 E-value=4.6e+02 Score=24.52 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 011323 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (488)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (488)
......|-..|.+.+++-+|-+++..+-..+
T Consensus 217 ~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 217 LKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp -CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred hhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 3344445555556666666666665555443
No 342
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.87 E-value=2.5e+02 Score=21.25 Aligned_cols=60 Identities=7% Similarity=0.085 Sum_probs=42.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALID-F-----AGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 332 (488)
+...+. +...|++-+|-++++..-.....+ ....+..||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~-lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVR-LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHH-HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333333 344599999999999988775555 5566777777 2 2357999999999988765
No 343
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=22.62 E-value=1.2e+02 Score=25.30 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=8.0
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 011323 241 MKACANAGQVDRAREVYK 258 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~ 258 (488)
+...+..|+.+-+..+++
T Consensus 165 L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHH
Confidence 333444555544444443
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.53 E-value=1.6e+02 Score=21.22 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=23.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444444455566666666555444455555555555555544
No 345
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.87 E-value=1.4e+02 Score=21.88 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (488)
+..-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 27 ~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 27 EEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp SSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333444444444444443344443333344444444
No 346
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.14 E-value=2e+02 Score=19.53 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (488)
.|.++.+++..-|+.|+..+...++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 34555555666666666666666666665555
No 347
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.53 E-value=2.8e+02 Score=21.02 Aligned_cols=58 Identities=9% Similarity=0.127 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 011323 391 PKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (488)
+....+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-...-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~ 135 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQS 135 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 346677888877766544 5567777777888888888888888888877777665433
No 348
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.18 E-value=99 Score=18.20 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=9.4
Q ss_pred HHhhcCC--HHHHHHHHHHH
Q 011323 418 ACERKDD--VEVGLMLLSQA 435 (488)
Q Consensus 418 ~~~~~g~--~~~a~~~~~~~ 435 (488)
+....|+ ++.|++++.+|
T Consensus 29 Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 29 ALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHHHh
Confidence 3344444 56666665554
Done!