Query 011324
Match_columns 488
No_of_seqs 336 out of 1993
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 2.5E-38 8.4E-43 333.5 24.3 234 252-485 91-357 (438)
2 3ugo_A RNA polymerase sigma fa 100.0 6.1E-39 2.1E-43 314.8 15.4 209 253-461 5-245 (245)
3 2a6h_F RNA polymerase sigma fa 100.0 1.3E-38 4.5E-43 334.4 18.2 233 253-485 77-342 (423)
4 3iyd_F RNA polymerase sigma fa 99.9 2.9E-27 1E-31 258.4 1.9 167 315-481 357-527 (613)
5 1l0o_C Sigma factor; bergerat 99.8 2E-20 6.9E-25 175.8 6.8 153 314-467 13-166 (243)
6 1rp3_A RNA polymerase sigma fa 99.8 8E-18 2.7E-22 158.2 16.3 136 327-465 11-151 (239)
7 1sig_A Sigma70, RNA polymerase 99.7 3.4E-17 1.2E-21 166.3 11.8 85 317-401 250-338 (339)
8 1or7_A Sigma-24, RNA polymeras 99.7 5.2E-17 1.8E-21 148.9 11.6 141 315-458 9-183 (194)
9 2q1z_A RPOE, ECF SIGE; ECF sig 99.7 7.1E-18 2.4E-22 153.7 1.2 144 314-458 11-178 (184)
10 3mzy_A RNA polymerase sigma-H 99.5 3.2E-14 1.1E-18 125.8 8.1 106 352-458 1-151 (164)
11 2lfw_A PHYR sigma-like domain; 99.4 1E-14 3.6E-19 131.7 -4.6 128 330-459 3-137 (157)
12 3n0r_A Response regulator; sig 99.3 1.2E-12 4.2E-17 129.6 6.2 131 325-457 17-153 (286)
13 2o7g_A Probable RNA polymerase 99.2 1.4E-11 4.8E-16 104.6 7.3 84 318-404 13-97 (112)
14 1h3l_A RNA polymerase sigma fa 99.1 3.2E-11 1.1E-15 98.0 5.1 77 323-401 6-83 (87)
15 3clo_A Transcriptional regulat 97.9 2.8E-09 9.7E-14 103.7 -20.3 142 316-459 84-240 (258)
16 1rp3_A RNA polymerase sigma fa 94.1 0.57 1.9E-05 42.9 12.2 30 429-458 201-230 (239)
17 3iyd_F RNA polymerase sigma fa 94.0 0.017 5.8E-07 63.1 1.9 34 253-286 94-127 (613)
18 3hug_A RNA polymerase sigma fa 93.9 0.032 1.1E-06 45.4 3.0 31 428-458 50-80 (92)
19 1l9z_H Sigma factor SIGA; heli 92.9 0.81 2.8E-05 48.2 12.5 30 430-459 394-423 (438)
20 1x3u_A Transcriptional regulat 92.7 0.12 4.1E-06 40.2 4.5 51 410-460 10-60 (79)
21 2p7v_B Sigma-70, RNA polymeras 92.2 0.15 5.3E-06 38.9 4.4 30 430-459 24-53 (68)
22 1l0o_C Sigma factor; bergerat 91.0 0.14 4.7E-06 47.0 3.5 32 428-459 211-242 (243)
23 1tty_A Sigma-A, RNA polymerase 90.7 0.18 6.1E-06 40.7 3.5 30 430-459 37-66 (87)
24 1je8_A Nitrate/nitrite respons 90.5 0.063 2.1E-06 43.1 0.6 31 429-459 34-64 (82)
25 3t72_q RNA polymerase sigma fa 90.4 0.18 6.3E-06 42.4 3.4 30 430-459 38-67 (99)
26 2o8x_A Probable RNA polymerase 90.0 0.23 7.9E-06 37.4 3.4 31 429-459 29-59 (70)
27 1ku3_A Sigma factor SIGA; heli 90.0 0.51 1.8E-05 36.4 5.5 30 430-459 29-58 (73)
28 3c57_A Two component transcrip 89.8 0.082 2.8E-06 43.6 0.8 31 430-460 41-71 (95)
29 1xsv_A Hypothetical UPF0122 pr 87.5 0.29 9.8E-06 41.8 2.7 31 428-458 38-68 (113)
30 2jt1_A PEFI protein; solution 85.9 1.4 4.7E-05 35.5 5.8 26 429-454 22-47 (77)
31 1tc3_C Protein (TC3 transposas 85.9 1.1 3.8E-05 30.6 4.6 26 431-456 21-46 (51)
32 2rnj_A Response regulator prot 85.8 0.081 2.8E-06 43.0 -1.6 31 430-460 43-73 (91)
33 2jpc_A SSRB; DNA binding prote 85.2 0.72 2.4E-05 34.0 3.5 32 430-461 12-43 (61)
34 3ulq_B Transcriptional regulat 84.8 0.65 2.2E-05 38.0 3.4 32 430-461 43-74 (90)
35 2a6h_F RNA polymerase sigma fa 83.4 3 0.0001 43.4 8.5 30 430-459 379-408 (423)
36 1fse_A GERE; helix-turn-helix 83.2 1.9 6.5E-05 32.6 5.3 31 429-459 24-54 (74)
37 2x48_A CAG38821; archeal virus 83.0 1.3 4.3E-05 32.1 4.0 24 431-454 31-54 (55)
38 1p4w_A RCSB; solution structur 80.8 0.73 2.5E-05 38.5 2.2 31 431-461 49-79 (99)
39 1s7o_A Hypothetical UPF0122 pr 80.4 1.6 5.4E-05 37.3 4.3 29 430-458 37-65 (113)
40 3k2z_A LEXA repressor; winged 74.7 5.4 0.00018 36.5 6.5 41 414-454 7-47 (196)
41 1l3l_A Transcriptional activat 74.5 1.9 6.4E-05 40.5 3.3 32 429-460 186-217 (234)
42 2q0o_A Probable transcriptiona 71.5 1.9 6.7E-05 40.4 2.7 31 430-460 189-219 (236)
43 2heo_A Z-DNA binding protein 1 71.0 5.4 0.00018 30.6 4.6 27 428-454 22-48 (67)
44 3kz3_A Repressor protein CI; f 69.4 11 0.00037 28.9 6.2 35 417-453 13-47 (80)
45 3szt_A QCSR, quorum-sensing co 69.4 2.9 9.8E-05 39.5 3.3 32 430-461 189-220 (237)
46 1xn7_A Hypothetical protein YH 66.4 9.4 0.00032 30.6 5.3 29 425-454 11-39 (78)
47 3mn2_A Probable ARAC family tr 65.3 13 0.00045 30.2 6.2 39 417-455 4-42 (108)
48 1qbj_A Protein (double-strande 64.4 14 0.00048 29.7 6.0 27 429-455 25-51 (81)
49 3qp6_A CVIR transcriptional re 63.1 3.9 0.00013 39.4 2.9 32 430-461 211-242 (265)
50 2htj_A P fimbrial regulatory p 62.5 11 0.00037 29.4 5.0 24 431-454 14-37 (81)
51 1lmb_3 Protein (lambda repress 61.9 20 0.0007 27.8 6.6 39 413-453 14-52 (92)
52 1jgs_A Multiple antibiotic res 61.7 37 0.0013 28.0 8.5 65 381-454 7-71 (138)
53 2k9s_A Arabinose operon regula 61.7 15 0.00052 29.8 5.9 38 417-454 5-43 (107)
54 2k02_A Ferrous iron transport 60.9 11 0.00037 31.0 4.8 29 425-454 11-39 (87)
55 3oio_A Transcriptional regulat 60.2 13 0.00044 30.5 5.3 39 417-455 9-47 (113)
56 1qgp_A Protein (double strande 60.0 14 0.00046 29.3 5.1 26 430-455 30-55 (77)
57 3oop_A LIN2960 protein; protei 60.0 42 0.0014 27.9 8.7 64 382-454 11-74 (143)
58 3bpv_A Transcriptional regulat 60.0 48 0.0016 27.2 8.9 62 384-454 5-66 (138)
59 3oou_A LIN2118 protein; protei 59.6 18 0.00061 29.4 6.0 37 419-455 9-45 (108)
60 1y7y_A C.AHDI; helix-turn-heli 59.2 23 0.0008 26.0 6.2 23 431-453 26-48 (74)
61 1oyi_A Double-stranded RNA-bin 58.9 10 0.00034 31.0 4.2 23 432-454 31-53 (82)
62 3klo_A Transcriptional regulat 57.5 18 0.0006 32.7 6.2 39 425-463 168-206 (225)
63 3lsg_A Two-component response 57.4 23 0.00077 28.5 6.2 32 424-455 11-43 (103)
64 3bro_A Transcriptional regulat 56.8 47 0.0016 27.3 8.4 65 383-454 9-73 (141)
65 3f6w_A XRE-family like protein 56.3 24 0.00081 26.9 5.9 31 431-462 27-57 (83)
66 1zx4_A P1 PARB, plasmid partit 55.9 9.6 0.00033 35.8 4.1 28 431-458 24-51 (192)
67 2b5a_A C.BCLI; helix-turn-heli 55.5 29 0.00099 25.7 6.2 23 431-453 23-45 (77)
68 2rdp_A Putative transcriptiona 55.0 55 0.0019 27.3 8.6 24 431-454 56-79 (150)
69 2fa5_A Transcriptional regulat 54.9 37 0.0013 28.9 7.5 24 431-454 63-86 (162)
70 1jko_C HIN recombinase, DNA-in 54.9 6.1 0.00021 27.1 2.1 24 431-454 21-44 (52)
71 1r69_A Repressor protein CI; g 54.3 20 0.00067 26.0 4.9 24 431-454 14-37 (69)
72 2pex_A Transcriptional regulat 54.2 57 0.0019 27.4 8.6 64 382-454 21-84 (153)
73 3s8q_A R-M controller protein; 54.1 26 0.0009 26.6 5.9 31 431-462 24-54 (82)
74 1jhg_A Trp operon repressor; c 53.9 14 0.0005 31.2 4.5 21 431-451 58-78 (101)
75 1zug_A Phage 434 CRO protein; 53.6 11 0.00039 27.5 3.5 24 431-454 16-39 (71)
76 2ewt_A BLDD, putative DNA-bind 53.6 35 0.0012 24.9 6.3 23 431-453 21-45 (71)
77 3eco_A MEPR; mutlidrug efflux 53.1 50 0.0017 27.2 7.9 65 383-454 6-70 (139)
78 2wus_R RODZ, putative uncharac 52.6 19 0.00064 30.4 5.1 23 431-453 20-42 (112)
79 2wiu_B HTH-type transcriptiona 52.4 31 0.001 26.4 6.0 23 431-453 25-47 (88)
80 3i4p_A Transcriptional regulat 52.1 19 0.00064 31.8 5.3 29 425-454 12-40 (162)
81 2ef8_A C.ECOT38IS, putative tr 51.8 35 0.0012 25.8 6.2 23 431-453 23-45 (84)
82 1uxc_A FRUR (1-57), fructose r 51.7 12 0.00041 28.7 3.4 23 432-454 1-23 (65)
83 2dt5_A AT-rich DNA-binding pro 51.5 27 0.00091 32.8 6.5 51 405-455 2-52 (211)
84 1jhf_A LEXA repressor; LEXA SO 51.4 26 0.00089 31.7 6.3 35 419-453 13-48 (202)
85 3nrv_A Putative transcriptiona 51.3 33 0.0011 28.7 6.6 65 381-454 12-77 (148)
86 2e1c_A Putative HTH-type trans 51.3 13 0.00044 33.5 4.1 29 425-454 36-64 (171)
87 3g5g_A Regulatory protein; tra 50.8 29 0.00098 28.2 5.9 43 417-462 29-71 (99)
88 2w7n_A TRFB transcriptional re 50.6 21 0.00071 30.2 5.0 31 428-458 31-61 (101)
89 3oio_A Transcriptional regulat 50.6 36 0.0012 27.8 6.5 54 342-395 13-66 (113)
90 2r1j_L Repressor protein C2; p 50.4 23 0.00078 25.5 4.7 23 431-453 18-40 (68)
91 3fm5_A Transcriptional regulat 50.2 58 0.002 27.3 8.0 65 382-454 13-77 (150)
92 1xmk_A Double-stranded RNA-spe 50.1 21 0.0007 28.8 4.7 32 422-454 17-49 (79)
93 3b7h_A Prophage LP1 protein 11 49.7 33 0.0011 25.5 5.7 32 431-462 20-51 (78)
94 2k9q_A Uncharacterized protein 49.3 26 0.00089 26.4 5.1 23 431-453 15-37 (77)
95 2a6c_A Helix-turn-helix motif; 49.3 26 0.0009 27.0 5.2 23 431-453 31-53 (83)
96 2nnn_A Probable transcriptiona 49.2 79 0.0027 25.8 8.5 64 381-454 12-75 (140)
97 2dbb_A Putative HTH-type trans 49.1 28 0.00097 29.9 5.9 28 426-454 19-46 (151)
98 2cfx_A HTH-type transcriptiona 49.0 29 0.001 29.7 5.9 29 426-455 15-43 (144)
99 3mn2_A Probable ARAC family tr 49.0 39 0.0013 27.2 6.4 41 349-389 15-55 (108)
100 3oou_A LIN2118 protein; protei 49.0 35 0.0012 27.6 6.2 45 344-388 13-57 (108)
101 2fmy_A COOA, carbon monoxide o 48.5 65 0.0022 28.6 8.4 25 431-455 167-191 (220)
102 2fbh_A Transcriptional regulat 48.3 78 0.0027 26.0 8.4 63 384-454 13-75 (146)
103 3mkl_A HTH-type transcriptiona 47.6 24 0.00084 29.2 5.0 34 421-454 13-46 (120)
104 1adr_A P22 C2 repressor; trans 47.4 30 0.001 25.5 5.1 23 431-453 18-40 (76)
105 2vt3_A REX, redox-sensing tran 47.2 29 0.001 32.6 6.1 51 405-455 7-57 (215)
106 4ghj_A Probable transcriptiona 46.7 43 0.0015 27.7 6.3 36 416-453 36-71 (101)
107 2cg4_A Regulatory protein ASNC 46.4 33 0.0011 29.5 5.9 28 426-454 18-45 (152)
108 2a61_A Transcriptional regulat 46.4 53 0.0018 27.1 7.1 24 431-454 47-70 (145)
109 2kpj_A SOS-response transcript 46.2 34 0.0012 26.9 5.5 24 430-453 21-44 (94)
110 3eus_A DNA-binding protein; st 45.8 43 0.0015 26.0 6.0 31 431-462 27-57 (86)
111 3deu_A Transcriptional regulat 45.8 86 0.0029 27.2 8.6 65 382-454 27-91 (166)
112 1lj9_A Transcriptional regulat 45.7 87 0.003 25.8 8.3 62 384-454 5-66 (144)
113 1yio_A Response regulatory pro 45.7 13 0.00046 32.8 3.3 32 429-460 155-186 (208)
114 2w25_A Probable transcriptiona 45.6 19 0.00064 31.1 4.1 28 426-454 17-44 (150)
115 2o38_A Hypothetical protein; a 44.9 42 0.0014 28.4 6.1 42 419-462 43-84 (120)
116 3mkl_A HTH-type transcriptiona 44.9 35 0.0012 28.2 5.6 55 341-396 12-66 (120)
117 2p5v_A Transcriptional regulat 44.5 36 0.0012 29.7 5.9 28 426-454 20-47 (162)
118 1bl0_A Protein (multiple antib 44.4 24 0.00083 29.7 4.6 38 417-454 13-50 (129)
119 2cyy_A Putative HTH-type trans 44.0 38 0.0013 29.2 5.9 28 426-454 17-44 (151)
120 2p5k_A Arginine repressor; DNA 43.9 46 0.0016 24.1 5.6 25 430-454 18-47 (64)
121 3e6m_A MARR family transcripti 43.7 49 0.0017 28.3 6.5 64 382-454 27-90 (161)
122 1a04_A Nitrate/nitrite respons 43.4 14 0.00047 32.9 3.0 32 430-461 168-199 (215)
123 1on2_A Transcriptional regulat 43.2 48 0.0016 27.9 6.3 28 426-454 18-45 (142)
124 2xi8_A Putative transcription 43.1 29 0.00098 24.8 4.2 23 431-453 14-36 (66)
125 3cjn_A Transcriptional regulat 43.0 55 0.0019 27.8 6.8 64 382-454 26-89 (162)
126 3dv8_A Transcriptional regulat 42.8 79 0.0027 27.8 8.0 25 431-455 169-193 (220)
127 3keo_A Redox-sensing transcrip 42.5 29 0.001 32.8 5.2 50 405-454 6-55 (212)
128 2ia0_A Putative HTH-type trans 42.5 39 0.0013 30.2 5.9 29 426-455 27-55 (171)
129 1y6u_A XIS, excisionase from t 42.3 18 0.00061 28.4 3.1 24 431-454 16-39 (70)
130 3hsr_A HTH-type transcriptiona 41.9 53 0.0018 27.4 6.4 64 382-454 10-73 (140)
131 1x57_A Endothelial differentia 41.8 44 0.0015 26.0 5.5 23 431-453 26-48 (91)
132 3tqn_A Transcriptional regulat 41.6 60 0.0021 26.9 6.6 24 431-454 33-56 (113)
133 3k0l_A Repressor protein; heli 41.4 64 0.0022 27.6 7.0 65 381-454 19-83 (162)
134 3qq6_A HTH-type transcriptiona 41.2 35 0.0012 26.1 4.7 32 431-462 23-54 (78)
135 3bja_A Transcriptional regulat 41.1 55 0.0019 26.8 6.2 24 431-454 47-70 (139)
136 3vk0_A NHTF, transcriptional r 40.9 49 0.0017 27.1 5.9 23 431-453 34-56 (114)
137 1j5y_A Transcriptional regulat 40.7 53 0.0018 29.6 6.5 27 428-454 33-59 (187)
138 4hbl_A Transcriptional regulat 40.5 75 0.0025 26.7 7.2 24 431-454 55-78 (149)
139 4ham_A LMO2241 protein; struct 40.4 44 0.0015 28.5 5.6 25 430-454 37-61 (134)
140 3c3w_A Two component transcrip 40.1 19 0.00064 32.7 3.4 32 431-462 164-195 (225)
141 2gxg_A 146AA long hypothetical 40.0 1E+02 0.0035 25.4 7.8 24 431-454 50-73 (146)
142 2g7s_A Transcriptional regulat 39.5 39 0.0013 28.6 5.2 44 405-448 2-45 (194)
143 1s3j_A YUSO protein; structura 39.5 61 0.0021 27.1 6.4 24 431-454 51-74 (155)
144 3cdh_A Transcriptional regulat 39.4 84 0.0029 26.4 7.3 24 431-454 57-80 (155)
145 3s2w_A Transcriptional regulat 39.4 85 0.0029 26.6 7.4 65 381-454 23-87 (159)
146 2qww_A Transcriptional regulat 39.2 73 0.0025 26.7 6.9 24 431-454 55-78 (154)
147 3kor_A Possible Trp repressor; 39.2 41 0.0014 29.3 5.2 23 431-453 75-97 (119)
148 3dkw_A DNR protein; CRP-FNR, H 38.7 1E+02 0.0035 27.2 8.1 25 431-455 178-202 (227)
149 3omt_A Uncharacterized protein 38.6 33 0.0011 25.5 4.0 31 431-462 21-51 (73)
150 2vn2_A DNAD, chromosome replic 38.1 27 0.00094 29.8 3.9 33 430-462 50-84 (128)
151 2hr3_A Probable transcriptiona 38.0 1.3E+02 0.0046 24.7 8.3 24 431-454 50-73 (147)
152 2pn6_A ST1022, 150AA long hypo 37.9 43 0.0015 28.6 5.2 24 431-454 17-40 (150)
153 1d5y_A ROB transcription facto 37.6 59 0.002 30.6 6.6 30 291-320 8-37 (292)
154 2l0k_A Stage III sporulation p 37.5 44 0.0015 27.5 4.9 22 432-453 21-42 (93)
155 2d1h_A ST1889, 109AA long hypo 37.4 43 0.0015 26.2 4.8 24 431-454 36-59 (109)
156 1q1h_A TFE, transcription fact 37.4 41 0.0014 27.3 4.8 26 429-454 31-56 (110)
157 1z91_A Organic hydroperoxide r 37.3 44 0.0015 27.8 5.1 65 381-454 13-77 (147)
158 1i1g_A Transcriptional regulat 37.3 54 0.0019 27.5 5.7 27 427-454 15-41 (141)
159 2x4h_A Hypothetical protein SS 37.3 58 0.002 27.1 5.9 25 430-454 30-54 (139)
160 3bj6_A Transcriptional regulat 37.2 76 0.0026 26.4 6.7 24 431-454 54-77 (152)
161 3e97_A Transcriptional regulat 37.2 60 0.0021 29.0 6.3 31 431-461 175-207 (231)
162 1ais_B TFB TFIIB, protein (tra 37.0 2E+02 0.007 25.7 9.9 30 428-457 162-191 (200)
163 2ict_A Antitoxin HIGA; helix-t 36.7 54 0.0019 25.6 5.3 23 431-453 21-43 (94)
164 2fq4_A Transcriptional regulat 36.7 57 0.002 28.1 5.9 38 414-451 14-52 (192)
165 2qwt_A Transcriptional regulat 36.6 63 0.0022 28.0 6.2 40 412-451 13-52 (196)
166 2lnb_A Z-DNA-binding protein 1 36.4 70 0.0024 26.0 5.7 33 424-456 27-59 (80)
167 1sfu_A 34L protein; protein/Z- 36.3 25 0.00087 28.2 3.1 23 432-454 30-52 (75)
168 3bs3_A Putative DNA-binding pr 36.0 48 0.0017 24.4 4.6 23 431-453 23-45 (76)
169 3neu_A LIN1836 protein; struct 35.6 77 0.0026 26.7 6.4 25 430-454 36-60 (125)
170 1pdn_C Protein (PRD paired); p 35.5 46 0.0016 26.8 4.8 25 431-455 33-57 (128)
171 3op9_A PLI0006 protein; struct 35.4 54 0.0019 26.6 5.2 23 431-453 22-44 (114)
172 2fbi_A Probable transcriptiona 35.4 50 0.0017 27.1 5.1 24 431-454 50-73 (142)
173 3fmy_A HTH-type transcriptiona 35.3 35 0.0012 25.8 3.8 23 431-453 24-46 (73)
174 2ofy_A Putative XRE-family tra 35.2 74 0.0025 24.2 5.8 30 433-462 29-58 (86)
175 3bd1_A CRO protein; transcript 35.1 49 0.0017 25.1 4.6 25 431-456 12-36 (79)
176 2auw_A Hypothetical protein NE 35.0 69 0.0024 29.4 6.3 39 421-462 95-133 (170)
177 2eh3_A Transcriptional regulat 34.9 45 0.0015 28.4 4.9 36 416-451 6-42 (179)
178 3vpr_A Transcriptional regulat 34.9 45 0.0015 28.6 4.9 36 416-451 7-43 (190)
179 3lsg_A Two-component response 34.8 73 0.0025 25.3 5.9 74 348-451 15-89 (103)
180 2v79_A DNA replication protein 34.4 29 0.00098 30.4 3.5 36 428-463 48-85 (135)
181 3o9x_A Uncharacterized HTH-typ 34.4 56 0.0019 27.4 5.3 23 431-453 84-106 (133)
182 2h09_A Transcriptional regulat 34.4 83 0.0028 26.8 6.5 24 431-454 54-77 (155)
183 3t76_A VANU, transcriptional r 34.2 56 0.0019 26.2 5.0 30 431-462 37-66 (88)
184 1ft9_A Carbon monoxide oxidati 34.1 87 0.003 27.8 6.9 24 432-455 164-187 (222)
185 2y75_A HTH-type transcriptiona 33.9 88 0.003 26.1 6.5 26 429-454 24-49 (129)
186 1ku9_A Hypothetical protein MJ 33.8 82 0.0028 25.9 6.2 24 431-454 41-64 (152)
187 3qbm_A TETR transcriptional re 33.8 73 0.0025 27.0 6.1 36 415-450 10-46 (199)
188 2zcm_A Biofilm operon icaabcd 33.7 58 0.002 27.9 5.4 36 416-451 11-47 (192)
189 2b0l_A GTP-sensing transcripti 33.4 29 0.001 28.7 3.2 24 431-454 43-66 (102)
190 4ev0_A Transcription regulator 33.3 1.4E+02 0.0048 26.0 8.0 25 431-455 163-187 (216)
191 3e6c_C CPRK, cyclic nucleotide 33.2 92 0.0032 28.3 7.0 25 431-455 177-201 (250)
192 2q24_A Putative TETR family tr 33.1 62 0.0021 27.8 5.5 37 415-451 18-54 (194)
193 3gbg_A TCP pilus virulence reg 32.9 1.3E+02 0.0043 28.0 8.1 53 344-397 177-229 (276)
194 1bl0_A Protein (multiple antib 32.9 57 0.002 27.3 5.1 40 349-388 24-63 (129)
195 1j9i_A GPNU1 DBD;, terminase s 32.8 28 0.00094 26.3 2.8 25 432-456 3-27 (68)
196 3ivp_A Putative transposon-rel 32.7 77 0.0026 26.2 5.9 23 431-453 25-47 (126)
197 3by6_A Predicted transcription 32.7 92 0.0031 26.4 6.4 25 430-454 34-58 (126)
198 3b81_A Transcriptional regulat 32.6 51 0.0018 28.2 4.9 38 413-450 12-50 (203)
199 2bv6_A MGRA, HTH-type transcri 32.5 56 0.0019 27.0 5.0 65 381-454 9-74 (142)
200 3p7n_A Sensor histidine kinase 32.2 22 0.00076 32.4 2.5 29 431-459 213-241 (258)
201 3qkx_A Uncharacterized HTH-typ 32.2 79 0.0027 26.5 5.9 42 407-448 4-45 (188)
202 4aik_A Transcriptional regulat 31.9 2.3E+02 0.0077 24.2 9.0 27 428-454 43-69 (151)
203 3f52_A CLP gene regulator (CLG 31.7 75 0.0026 25.8 5.5 23 431-453 41-63 (117)
204 2jt1_A PEFI protein; solution 31.7 66 0.0022 25.5 4.9 26 294-319 16-41 (77)
205 3ryp_A Catabolite gene activat 31.7 90 0.0031 27.2 6.4 25 431-455 167-191 (210)
206 3knw_A Putative transcriptiona 31.6 95 0.0032 26.6 6.5 47 405-451 8-54 (212)
207 2nx4_A Transcriptional regulat 31.3 55 0.0019 28.4 4.9 37 415-451 13-50 (194)
208 2fu4_A Ferric uptake regulatio 31.2 58 0.002 24.9 4.5 25 430-454 32-61 (83)
209 2l8n_A Transcriptional repress 31.1 22 0.00074 27.4 1.9 23 431-453 9-31 (67)
210 2ibd_A Possible transcriptiona 31.1 54 0.0018 28.6 4.8 32 417-448 20-51 (204)
211 3vib_A MTRR; helix-turn-helix 30.5 56 0.0019 28.5 4.9 37 415-451 13-50 (210)
212 1y9q_A Transcriptional regulat 30.4 81 0.0028 27.9 5.9 23 431-453 24-46 (192)
213 1rkt_A Protein YFIR; transcrip 30.4 56 0.0019 28.4 4.8 37 414-450 14-51 (205)
214 2v57_A TETR family transcripti 30.4 73 0.0025 27.0 5.5 39 412-451 14-52 (190)
215 2k9l_A RNA polymerase sigma fa 30.3 41 0.0014 26.4 3.4 26 431-456 48-73 (76)
216 2ek5_A Predicted transcription 30.2 1E+02 0.0036 26.2 6.4 26 430-455 27-52 (129)
217 3cdl_A Transcriptional regulat 30.2 57 0.0019 28.4 4.8 36 415-450 12-48 (203)
218 3dcf_A Transcriptional regulat 30.1 97 0.0033 26.6 6.3 38 414-451 33-71 (218)
219 3kp7_A Transcriptional regulat 30.0 75 0.0026 26.6 5.4 24 431-454 51-74 (151)
220 2wui_A MEXZ, transcriptional r 30.0 52 0.0018 28.8 4.5 37 415-451 14-51 (210)
221 2gau_A Transcriptional regulat 30.0 1.6E+02 0.0056 26.0 8.0 25 431-455 180-204 (232)
222 2ras_A Transcriptional regulat 29.9 90 0.0031 27.0 6.1 44 405-448 5-48 (212)
223 2w48_A Sorbitol operon regulat 29.9 70 0.0024 31.2 5.8 28 430-457 20-47 (315)
224 1u78_A TC3 transposase, transp 29.8 59 0.002 26.9 4.7 25 431-455 22-46 (141)
225 1rr7_A Middle operon regulator 29.7 1.1E+02 0.0038 26.4 6.5 51 402-456 67-117 (129)
226 3anp_C Transcriptional repress 29.7 95 0.0032 26.8 6.2 41 408-448 6-46 (204)
227 2zb9_A Putative transcriptiona 29.6 86 0.0029 27.3 5.9 40 412-451 23-63 (214)
228 2rek_A Putative TETR-family tr 29.6 67 0.0023 27.6 5.1 37 414-451 18-55 (199)
229 3crj_A Transcription regulator 29.5 60 0.002 28.3 4.8 37 414-450 16-53 (199)
230 3he0_A Transcriptional regulat 29.4 62 0.0021 27.4 4.9 32 417-448 17-48 (196)
231 2qtq_A Transcriptional regulat 29.3 80 0.0027 27.1 5.6 36 417-452 22-57 (213)
232 3ppb_A Putative TETR family tr 29.3 73 0.0025 26.8 5.3 37 415-451 12-49 (195)
233 3col_A Putative transcription 29.3 46 0.0016 28.2 3.9 32 417-448 16-47 (196)
234 2g7g_A RHA04620, putative tran 29.3 57 0.0019 29.4 4.8 36 414-450 13-48 (213)
235 1b0n_A Protein (SINR protein); 29.2 63 0.0022 25.7 4.6 24 431-454 14-37 (111)
236 2bnm_A Epoxidase; oxidoreducta 29.2 84 0.0029 27.8 5.9 24 431-454 23-46 (198)
237 2elh_A CG11849-PA, LD40883P; s 29.2 55 0.0019 25.8 4.1 25 431-455 38-62 (87)
238 3r0a_A Putative transcriptiona 29.1 82 0.0028 26.4 5.5 23 432-454 43-65 (123)
239 3f2g_A Alkylmercury lyase; MER 29.1 61 0.0021 31.0 5.0 29 428-456 33-61 (220)
240 3d0s_A Transcriptional regulat 29.1 1.2E+02 0.0042 26.8 7.0 25 431-455 177-201 (227)
241 2d6y_A Putative TETR family re 29.0 79 0.0027 27.6 5.6 37 415-451 11-48 (202)
242 3fym_A Putative uncharacterize 28.9 74 0.0025 27.0 5.2 22 431-452 16-37 (130)
243 3bdd_A Regulatory protein MARR 28.9 2E+02 0.0069 23.3 7.9 24 431-454 45-68 (142)
244 3kz9_A SMCR; transcriptional r 28.5 59 0.002 27.7 4.5 32 417-448 23-54 (206)
245 2ppx_A AGR_C_3184P, uncharacte 28.5 69 0.0024 25.4 4.6 23 431-453 43-65 (99)
246 1lva_A Selenocysteine-specific 28.5 3.7E+02 0.013 25.4 10.6 32 424-455 150-181 (258)
247 3lwj_A Putative TETR-family tr 28.4 1E+02 0.0034 26.3 6.1 40 412-451 12-52 (202)
248 1neq_A DNA-binding protein NER 28.3 12 0.0004 29.4 -0.1 50 430-481 21-70 (74)
249 2i10_A Putative TETR transcrip 28.3 66 0.0022 28.1 4.9 33 419-451 19-51 (202)
250 2hku_A A putative transcriptio 28.2 81 0.0028 27.5 5.5 35 417-452 26-60 (215)
251 1sfx_A Conserved hypothetical 28.0 94 0.0032 24.1 5.3 24 431-454 34-57 (109)
252 3f0c_A TETR-molecule A, transc 28.0 79 0.0027 27.3 5.3 35 417-451 17-51 (216)
253 3f1b_A TETR-like transcription 27.9 81 0.0028 26.8 5.3 38 414-451 16-54 (203)
254 2l49_A C protein; P2 bacteriop 27.8 79 0.0027 24.7 4.8 23 431-453 17-39 (99)
255 2rae_A Transcriptional regulat 27.7 81 0.0028 27.1 5.4 37 415-451 20-57 (207)
256 3dew_A Transcriptional regulat 27.7 61 0.0021 27.5 4.5 37 415-451 11-48 (206)
257 3cec_A Putative antidote prote 27.7 74 0.0025 25.3 4.7 23 431-453 31-53 (104)
258 3jw4_A Transcriptional regulat 27.6 66 0.0023 26.9 4.6 24 431-454 57-80 (148)
259 3nxc_A HTH-type protein SLMA; 27.5 2.2E+02 0.0077 24.1 8.2 73 298-370 40-113 (212)
260 4fx0_A Probable transcriptiona 27.5 1.7E+02 0.0058 24.9 7.3 24 431-454 52-75 (148)
261 1k78_A Paired box protein PAX5 27.3 71 0.0024 27.1 4.8 25 431-455 48-72 (149)
262 2w53_A Repressor, SMet; antibi 27.2 69 0.0024 28.1 4.9 36 415-450 14-50 (219)
263 3tgn_A ADC operon repressor AD 27.2 28 0.00094 29.1 2.1 23 432-454 52-74 (146)
264 3b02_A Transcriptional regulat 27.0 92 0.0031 27.1 5.6 25 431-455 139-163 (195)
265 3ech_A MEXR, multidrug resista 27.0 1.4E+02 0.0049 24.6 6.6 24 431-454 51-74 (142)
266 2kfs_A Conserved hypothetical 27.0 40 0.0014 30.4 3.1 25 431-455 31-55 (148)
267 3dpj_A Transcription regulator 26.8 1.5E+02 0.0052 25.0 6.9 47 405-451 2-48 (194)
268 3trb_A Virulence-associated pr 26.7 69 0.0024 26.3 4.4 31 431-462 27-57 (104)
269 3bru_A Regulatory protein, TET 26.6 79 0.0027 27.5 5.1 35 417-451 36-70 (222)
270 2hyj_A Putative TETR-family tr 26.4 87 0.003 27.2 5.3 36 414-449 14-50 (200)
271 3cwr_A Transcriptional regulat 26.2 99 0.0034 26.3 5.6 40 412-451 17-57 (208)
272 2pg4_A Uncharacterized protein 26.1 1.2E+02 0.0041 23.7 5.7 24 431-454 30-54 (95)
273 3g3z_A NMB1585, transcriptiona 26.1 1.9E+02 0.0064 23.8 7.2 24 431-454 45-68 (145)
274 2iai_A Putative transcriptiona 26.1 73 0.0025 28.4 4.9 33 417-449 35-68 (230)
275 1t6s_A Conserved hypothetical 26.1 1.1E+02 0.0039 27.6 6.1 39 416-454 7-47 (162)
276 3f8m_A GNTR-family protein tra 26.0 73 0.0025 30.1 5.0 27 428-454 33-59 (248)
277 3kkc_A TETR family transcripti 25.9 65 0.0022 27.0 4.2 38 413-450 13-51 (177)
278 2iu5_A DHAS, YCEG, HTH-type dh 25.8 37 0.0013 29.4 2.7 35 415-449 16-51 (195)
279 1v4r_A Transcriptional repress 25.7 22 0.00075 28.8 1.1 26 430-455 34-59 (102)
280 3u2r_A Regulatory protein MARR 25.6 1.2E+02 0.0041 26.0 6.0 25 430-454 61-85 (168)
281 3bni_A Putative TETR-family tr 25.5 1.1E+02 0.0039 27.1 6.1 44 405-448 37-80 (229)
282 1sgm_A Putative HTH-type trans 25.5 50 0.0017 27.9 3.5 36 416-451 10-46 (191)
283 2xdn_A HTH-type transcriptiona 25.4 55 0.0019 28.5 3.8 39 413-451 12-51 (210)
284 1zk8_A Transcriptional regulat 25.3 59 0.002 27.5 3.9 35 416-450 12-47 (183)
285 2bgc_A PRFA; bacterial infecti 25.3 1.4E+02 0.0048 26.9 6.7 25 431-455 169-194 (238)
286 3mlf_A Transcriptional regulat 25.3 85 0.0029 25.8 4.8 23 431-453 36-58 (111)
287 4a0z_A Transcription factor FA 25.3 92 0.0031 28.6 5.4 28 425-453 21-48 (190)
288 3ppb_A Putative TETR family tr 25.2 2.9E+02 0.01 22.9 11.9 74 298-371 24-98 (195)
289 2o7t_A Transcriptional regulat 25.1 1.4E+02 0.0046 25.7 6.3 39 413-451 9-48 (199)
290 3pas_A TETR family transcripti 24.9 70 0.0024 26.9 4.3 38 414-451 10-48 (195)
291 2jn6_A Protein CGL2762, transp 24.9 62 0.0021 25.6 3.7 27 431-457 23-49 (97)
292 2np5_A Transcriptional regulat 24.7 61 0.0021 28.3 4.0 37 415-451 12-49 (203)
293 3f3x_A Transcriptional regulat 24.7 1.5E+02 0.005 24.5 6.2 22 433-454 52-73 (144)
294 1u8b_A ADA polyprotein; protei 24.6 65 0.0022 27.0 4.0 27 429-455 91-117 (133)
295 1z4h_A TORI, TOR inhibition pr 24.5 59 0.002 24.4 3.3 25 431-455 10-34 (66)
296 3lfp_A CSP231I C protein; tran 24.4 96 0.0033 24.4 4.8 23 431-453 14-40 (98)
297 3cuo_A Uncharacterized HTH-typ 24.4 94 0.0032 24.0 4.7 25 431-455 38-62 (99)
298 2yve_A Transcriptional regulat 24.4 94 0.0032 26.6 5.1 36 416-451 8-44 (185)
299 1gdt_A GD resolvase, protein ( 24.3 3.5E+02 0.012 23.8 9.0 23 431-453 158-180 (183)
300 3gbg_A TCP pilus virulence reg 24.2 1.1E+02 0.0036 28.5 5.8 34 420-453 174-207 (276)
301 3kcc_A Catabolite gene activat 24.2 1.5E+02 0.0053 27.2 6.9 25 431-455 217-241 (260)
302 3s5r_A Transcriptional regulat 24.1 88 0.003 26.9 4.9 35 417-451 16-50 (216)
303 3gzi_A Transcriptional regulat 24.0 1.4E+02 0.0046 25.8 6.1 42 410-451 15-57 (218)
304 1ylf_A RRF2 family protein; st 24.0 73 0.0025 27.7 4.3 25 430-454 29-53 (149)
305 3pas_A TETR family transcripti 23.9 3.1E+02 0.011 22.7 8.8 71 302-372 28-98 (195)
306 2jvl_A TRMBF1; coactivator, he 23.6 96 0.0033 25.2 4.7 24 430-453 48-71 (107)
307 2nyx_A Probable transcriptiona 23.6 2.3E+02 0.0077 24.3 7.5 24 431-454 59-82 (168)
308 3kjx_A Transcriptional regulat 23.5 37 0.0013 32.7 2.4 25 429-453 8-32 (344)
309 2dk5_A DNA-directed RNA polyme 23.4 1E+02 0.0035 25.0 4.8 27 428-454 33-59 (91)
310 3la7_A Global nitrogen regulat 23.4 1.6E+02 0.0056 26.5 6.8 25 431-455 193-217 (243)
311 3h5t_A Transcriptional regulat 23.3 49 0.0017 32.0 3.3 25 429-453 7-31 (366)
312 3c07_A Putative TETR-family tr 23.2 1.2E+02 0.0043 28.2 6.1 39 413-451 42-81 (273)
313 2hin_A GP39, repressor protein 23.2 97 0.0033 24.2 4.4 22 433-454 12-33 (71)
314 2dg7_A Putative transcriptiona 23.2 62 0.0021 27.8 3.6 38 415-452 10-48 (195)
315 3mvp_A TETR/ACRR transcription 23.1 1.5E+02 0.0051 25.4 6.2 42 410-451 24-66 (217)
316 3ccy_A Putative TETR-family tr 23.0 51 0.0017 28.6 3.1 32 417-448 20-51 (203)
317 2vxz_A Pyrsv_GP04; viral prote 22.8 80 0.0027 28.8 4.2 40 413-454 8-47 (165)
318 2zcx_A SCO7815, TETR-family tr 22.6 91 0.0031 28.2 4.8 39 413-451 24-63 (231)
319 3c2b_A Transcriptional regulat 22.4 91 0.0031 27.1 4.7 38 414-451 17-55 (221)
320 3dcf_A Transcriptional regulat 22.4 3.6E+02 0.012 22.9 11.4 76 297-372 45-121 (218)
321 2cw1_A SN4M; lambda CRO fold, 22.3 77 0.0026 24.3 3.6 24 433-456 15-38 (65)
322 3mq0_A Transcriptional repress 22.3 84 0.0029 30.1 4.7 41 413-454 28-68 (275)
323 2fd5_A Transcriptional regulat 22.3 93 0.0032 26.2 4.6 36 414-449 9-45 (180)
324 3eup_A Transcriptional regulat 22.2 2.1E+02 0.0072 24.1 7.0 71 303-373 32-102 (204)
325 1y0u_A Arsenical resistance op 22.2 80 0.0027 24.9 3.9 24 431-454 43-66 (96)
326 2ao9_A Phage protein; structur 22.1 73 0.0025 28.8 3.9 23 431-453 48-70 (155)
327 3f1b_A TETR-like transcription 22.1 3.5E+02 0.012 22.6 11.3 74 297-370 28-102 (203)
328 2fxa_A Protease production reg 22.0 2.6E+02 0.0089 25.2 7.9 24 431-454 62-85 (207)
329 1r71_A Transcriptional repress 22.0 1.1E+02 0.0037 28.0 5.1 26 431-456 52-77 (178)
330 2fjr_A Repressor protein CI; g 22.0 1.2E+02 0.0041 26.7 5.4 22 433-454 22-43 (189)
331 2fbq_A Probable transcriptiona 21.8 97 0.0033 27.8 4.8 37 415-451 10-47 (235)
332 2qko_A Possible transcriptiona 21.7 57 0.0019 28.6 3.1 38 414-451 30-68 (215)
333 2id3_A Putative transcriptiona 21.7 1.4E+02 0.0047 26.5 5.8 40 412-451 40-80 (225)
334 3mky_B Protein SOPB; partition 21.6 92 0.0032 29.1 4.6 31 431-461 42-72 (189)
335 2oi8_A Putative regulatory pro 21.5 1.6E+02 0.0056 26.1 6.3 39 412-450 16-55 (216)
336 2fbk_A Transcriptional regulat 21.5 1E+02 0.0035 26.9 4.8 23 432-454 87-109 (181)
337 1p2f_A Response regulator; DRR 21.5 60 0.0021 28.7 3.3 38 424-461 157-197 (220)
338 2oz6_A Virulence factor regula 21.4 68 0.0023 28.0 3.6 25 431-455 164-188 (207)
339 3qbm_A TETR transcriptional re 21.4 3.6E+02 0.012 22.5 10.0 74 297-370 21-95 (199)
340 2eth_A Transcriptional regulat 21.2 71 0.0024 27.0 3.6 24 431-454 58-81 (154)
341 1mkm_A ICLR transcriptional re 21.2 1.3E+02 0.0044 28.1 5.7 27 428-454 20-46 (249)
342 3eup_A Transcriptional regulat 21.1 50 0.0017 28.2 2.6 36 415-450 14-50 (204)
343 3on2_A Probable transcriptiona 20.8 48 0.0016 28.1 2.4 34 415-448 15-49 (199)
344 3loc_A HTH-type transcriptiona 20.8 50 0.0017 28.4 2.5 40 412-451 18-58 (212)
345 4edg_A DNA primase; catalytic 20.8 17 0.00059 36.6 -0.6 91 350-455 232-324 (329)
346 1t33_A Putative transcriptiona 20.8 1.6E+02 0.0056 25.5 6.0 37 414-451 14-51 (224)
347 2oer_A Probable transcriptiona 20.6 66 0.0023 28.3 3.3 38 414-451 26-64 (214)
348 3edp_A LIN2111 protein; APC883 20.6 1.6E+02 0.0054 27.5 6.2 26 429-454 31-56 (236)
349 4aci_A HTH-type transcriptiona 20.6 66 0.0023 27.3 3.2 38 414-451 16-54 (191)
350 1sgm_A Putative HTH-type trans 20.6 3.6E+02 0.012 22.2 9.0 75 298-372 21-97 (191)
351 3qwg_A ESX-1 secretion-associa 20.6 63 0.0022 27.6 3.1 12 435-446 63-74 (123)
352 2gfn_A HTH-type transcriptiona 20.3 81 0.0028 27.8 3.9 37 415-451 12-49 (209)
353 2of7_A Putative TETR-family tr 20.3 1.3E+02 0.0043 27.6 5.3 40 412-451 48-88 (260)
354 3frw_A Putative Trp repressor 20.3 1.1E+02 0.0039 26.0 4.5 26 428-453 55-80 (107)
355 1ufm_A COP9 complex subunit 4; 20.3 1.1E+02 0.0038 24.5 4.3 27 429-455 28-54 (84)
356 2glo_A Brinker CG9653-PA; prot 20.2 86 0.0029 22.7 3.4 21 434-454 28-48 (59)
357 1d5y_A ROB transcription facto 20.2 69 0.0024 30.0 3.6 37 417-453 5-41 (292)
358 3geu_A Intercellular adhesion 20.2 53 0.0018 28.0 2.5 34 416-449 7-41 (189)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=2.5e-38 Score=333.54 Aligned_cols=234 Identities=32% Similarity=0.536 Sum_probs=206.7
Q ss_pred CCCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhhCCCCcHHHHHH---
Q 011324 252 DRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS------------------KLQSQFGREPTLIEWAK--- 310 (488)
Q Consensus 252 ~~~d~l~~YL~~i~~~~lLT~eEE~eL~~~iq~l~~le~~~~------------------~l~~~~Gr~Pt~~ewA~--- 310 (488)
...|+++.||++|+++|+||++||++|+++|+.++.++.... ......|+.|+..+|+.
T Consensus 91 ~~~d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (438)
T 1l9z_H 91 STSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKT 170 (438)
T ss_pred CCCChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchh
Confidence 356899999999999999999999999999999764433221 12234567888888742
Q ss_pred ---------HhcCCHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCch
Q 011324 311 ---------AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381 (488)
Q Consensus 311 ---------a~gm~eeeLi~~l~~Gd~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rF 381 (488)
+.+++..+|+..+++|..|+++||.+|+++|++||++|.++|.+++|||||||||||+|+++|||.+|++|
T Consensus 171 ~~~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rF 250 (438)
T 1l9z_H 171 VEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 250 (438)
T ss_pred hhhhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCh
Confidence 23566788999998888999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhC--CCHHHHHHHHHHhCCCc
Q 011324 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPL 459 (488)
Q Consensus 382 STYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LG--IS~etVk~~L~~ar~~l 459 (488)
+|||+|||||.|.++|+++.+.+++|.++.+.+++++++.+.+.+.+++.|+.+|||+.+| +++++|..++..+...+
T Consensus 251 sTYA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~ 330 (438)
T 1l9z_H 251 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPV 330 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cccccCCCCCCCccccccCCCC-CCCC
Q 011324 460 SMQQPVWADQDTTFQVMPLLLS-HLPS 485 (488)
Q Consensus 460 SLD~~i~~d~~~tl~e~i~D~s-~~pe 485 (488)
|||.+++++++..+.|+++|.. .+|+
T Consensus 331 SLd~~~~~d~d~~l~d~l~d~~~~~pe 357 (438)
T 1l9z_H 331 SLETPIGDEKDSFYGDFIPDENLPSPV 357 (438)
T ss_pred ccccccccccchhhhhhhcccccCCHH
Confidence 9999998777777888888753 3444
No 2
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=6.1e-39 Score=314.75 Aligned_cols=209 Identities=33% Similarity=0.577 Sum_probs=131.7
Q ss_pred CCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHH--h-----------------------hhCCCCcHH
Q 011324 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR-LEKEKSKLQ--S-----------------------QFGREPTLI 306 (488)
Q Consensus 253 ~~d~l~~YL~~i~~~~lLT~eEE~eL~~~iq~l~~-le~~~~~l~--~-----------------------~~Gr~Pt~~ 306 (488)
.+|++++||++|+++||||++||++|+++|+.++. .+.+..... . ..+.+|+..
T Consensus 5 ~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~ 84 (245)
T 3ugo_A 5 TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV 84 (245)
T ss_dssp CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHH
T ss_pred CCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhH
Confidence 47899999999999999999999999999999875 333322100 0 024789999
Q ss_pred HHHHHhcCCH----HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchh
Q 011324 307 EWAKAIGLSC----RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382 (488)
Q Consensus 307 ewA~a~gm~e----eeLi~~l~~Gd~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFS 382 (488)
+||.+.+++. .+|+..+++|+.|++.||+.|.++|+++|++|.+++.+++||+||||+|||+++++||+.+|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~ 164 (245)
T 3ugo_A 85 EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 164 (245)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 9999988753 456677788889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhC--CCHHHHHHHHHHhCCCcc
Q 011324 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPLS 460 (488)
Q Consensus 383 TYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LG--IS~etVk~~L~~ar~~lS 460 (488)
||++||||+.|.++++++.+.+++|.++.+.+.++.++.+.|...+++.||++|||+.|| ||+++|++++.+++.++|
T Consensus 165 tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 165 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999998
Q ss_pred c
Q 011324 461 M 461 (488)
Q Consensus 461 L 461 (488)
|
T Consensus 245 l 245 (245)
T 3ugo_A 245 L 245 (245)
T ss_dssp -
T ss_pred C
Confidence 6
No 3
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=1.3e-38 Score=334.36 Aligned_cols=233 Identities=32% Similarity=0.539 Sum_probs=203.2
Q ss_pred CCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------------------HHhhhCCCCcHHH-------
Q 011324 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSK------------------LQSQFGREPTLIE------- 307 (488)
Q Consensus 253 ~~d~l~~YL~~i~~~~lLT~eEE~eL~~~iq~l~~le~~~~~------------------l~~~~Gr~Pt~~e------- 307 (488)
..|+++.||++|+++|+||++||++|+++|+.+..+...... .....|+.|+..+
T Consensus 77 ~~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (423)
T 2a6h_F 77 TSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTV 156 (423)
T ss_dssp THHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHHH
T ss_pred CCcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhhh
Confidence 468999999999999999999999999999987543322111 1112234555433
Q ss_pred --HHH---HhcCCHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchh
Q 011324 308 --WAK---AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382 (488)
Q Consensus 308 --wA~---a~gm~eeeLi~~l~~Gd~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFS 382 (488)
|+. ++++++.+|+..+++|..|+++||.+|+++|+++|++|.++|.+++|||||||||||+|+++|||.+|++|+
T Consensus 157 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~Fs 236 (423)
T 2a6h_F 157 EEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 236 (423)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCHH
T ss_pred hhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCHH
Confidence 332 346778889999998889999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhC--CCHHHHHHHHHHhCCCcc
Q 011324 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFITRMPLS 460 (488)
Q Consensus 383 TYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LG--IS~etVk~~L~~ar~~lS 460 (488)
|||+||||+.|.++|+++.+.+++|.++.+.++++.++.+.+.+.+++.|+.+|||+.|| +++++|..++..+...+|
T Consensus 237 tYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~S 316 (423)
T 2a6h_F 237 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVS 316 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCEE
T ss_pred HHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccccCCCCCCCccccccCCCC-CCCC
Q 011324 461 MQQPVWADQDTTFQVMPLLLS-HLPS 485 (488)
Q Consensus 461 LD~~i~~d~~~tl~e~i~D~s-~~pe 485 (488)
||.+++++++..+.|+++|.. .+|+
T Consensus 317 ld~~~~~~~~~~l~d~l~d~~~~~pe 342 (423)
T 2a6h_F 317 LETPIGDEKDSFYGDFIPDEHLPSPV 342 (423)
T ss_dssp SSCBCSSSSSCBGGGSSCCSSSCCHH
T ss_pred cccccCCCCccchhhhhccccCCCHH
Confidence 999998877778899988764 3443
No 4
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=99.93 E-value=2.9e-27 Score=258.38 Aligned_cols=167 Identities=34% Similarity=0.682 Sum_probs=158.6
Q ss_pred CHHHHHHHhhhcH-HH---HHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHH
Q 011324 315 SCRDLKSELHSGN-SS---REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390 (488)
Q Consensus 315 ~eeeLi~~l~~Gd-~A---rekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIR 390 (488)
...+|+.+++.|+ .| ++.||..|+++|+++|++|++++.+++||+||||||||+++++||+.+|++|+||++||||
T Consensus 357 ~~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~ir 436 (613)
T 3iyd_F 357 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIR 436 (613)
T ss_dssp THHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHH
Confidence 3567888999998 56 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhCCCccccccCCCCCC
Q 011324 391 QTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQD 470 (488)
Q Consensus 391 naI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD~~i~~d~~ 470 (488)
|.|.++++++.+.+++|.++.+.+++++++...+.+++|+.||.+|||+.||+++++|+.++..++.++||+.+++++++
T Consensus 437 n~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~ 516 (613)
T 3iyd_F 437 QAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDED 516 (613)
T ss_dssp HHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSS
T ss_pred HHHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CccccccCCCC
Q 011324 471 TTFQVMPLLLS 481 (488)
Q Consensus 471 ~tl~e~i~D~s 481 (488)
..+.+++.|..
T Consensus 517 ~~l~d~i~d~~ 527 (613)
T 3iyd_F 517 SHLGDFIEDTT 527 (613)
T ss_dssp CCGGGSCCCSS
T ss_pred ccHHHHhcCCC
Confidence 88889888765
No 5
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.80 E-value=2e-20 Score=175.75 Aligned_cols=153 Identities=25% Similarity=0.458 Sum_probs=52.7
Q ss_pred CCHHHHHHHhhhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHH
Q 011324 314 LSCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392 (488)
Q Consensus 314 m~eeeLi~~l~~Gd-~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRna 392 (488)
+++.+|+..++.|+ .|++.|+..|.++|+++|++|.++..+++||+||||++||+++++||+.+|.+|.||+++||+|.
T Consensus 13 ~~~~~l~~~~~~gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~ 92 (243)
T 1l0o_C 13 QEMKELIRRSQEGDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGE 92 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHH
Confidence 34567888888888 89999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhCCCccccccCCC
Q 011324 393 IRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWA 467 (488)
Q Consensus 393 I~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD~~i~~ 467 (488)
|++++|++. .+++|..+.....+++++...+....++.++.++|++.+|++.+.+...+.......|++.++.+
T Consensus 93 ~~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 166 (243)
T 1l0o_C 93 IQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYE 166 (243)
T ss_dssp -------CC-CCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC----------
T ss_pred HHHHHHhcC-CccCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccc
Confidence 999999987 78999999999999999999999988889999999999999999999988877778889887644
No 6
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.76 E-value=8e-18 Score=158.23 Aligned_cols=136 Identities=21% Similarity=0.297 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcc---CCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhcCC
Q 011324 327 NSSREKLINANLRLVVHVAKQYQ---GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403 (488)
Q Consensus 327 d~ArekLIesnlrLV~sIAkry~---~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRnaI~~~IRk~sr~ 403 (488)
+.|++.||..|.++|+.+|++|. +++.+++||+||||++||+++++||+.+|.+|.||+++||+|.|++++|++.
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~-- 88 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD-- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS--
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 36899999999999999999998 6789999999999999999999999999899999999999999999999876
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHh--CCCccccccC
Q 011324 404 IRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT--RMPLSMQQPV 465 (488)
Q Consensus 404 irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~a--r~~lSLD~~i 465 (488)
+.|........++.++...+....++.|+.+|||+.+|++++++..++... ...+|+|.++
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~ 151 (239)
T 1rp3_A 89 -FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVF 151 (239)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccc
Confidence 578888888899999999999999999999999999999999999887643 2345666554
No 7
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.70 E-value=3.4e-17 Score=166.27 Aligned_cols=85 Identities=41% Similarity=0.907 Sum_probs=79.8
Q ss_pred HHHHHHhhhcH----HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHH
Q 011324 317 RDLKSELHSGN----SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQT 392 (488)
Q Consensus 317 eeLi~~l~~Gd----~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRna 392 (488)
..|+.+++.|+ .|++.||..|+++|+++|++|++++.+++||+||||||||+++++|++.+|.+|+||++|||+|.
T Consensus 250 ~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~ 329 (339)
T 1sig_A 250 KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQA 329 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHH
Confidence 56788888887 59999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHhc
Q 011324 393 IRKAIFQHS 401 (488)
Q Consensus 393 I~~~IRk~s 401 (488)
|++++|++.
T Consensus 330 ~~~~lr~~~ 338 (339)
T 1sig_A 330 ITRSIADQA 338 (339)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 999999875
No 8
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.70 E-value=5.2e-17 Score=148.86 Aligned_cols=141 Identities=17% Similarity=0.266 Sum_probs=111.5
Q ss_pred CHHHHHHHhhhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHH
Q 011324 315 SCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTI 393 (488)
Q Consensus 315 ~eeeLi~~l~~Gd-~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRnaI 393 (488)
++.+|+.+++.|+ .|++.|+..|.+.|+.+|++|.+ ..+++|++||+|+++|+++++|++.. .|.+|++.+++|.+
T Consensus 9 ~~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~ 85 (194)
T 1or7_A 9 TDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTA 85 (194)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHH
Confidence 3567888888888 89999999999999999999999 99999999999999999999999864 59999999999999
Q ss_pred HHHHHHhcCCccc----------------------chh----------HHHHHHHHHHHHHHH-HHhcCCCCcHHHHHHH
Q 011324 394 RKAIFQHSRTIRL----------------------PEN----------IYTLLSKVLEAKRLY-IQEGNHSPDKEDLARR 440 (488)
Q Consensus 394 ~~~IRk~sr~irl----------------------P~~----------v~e~l~kI~ka~~~L-~~elgr~pS~eEIAe~ 440 (488)
++++|++.+.... |.. +...+..+....+.+ ...+..+.|++|||+.
T Consensus 86 ~d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~EIA~~ 165 (194)
T 1or7_A 86 KNYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAI 165 (194)
T ss_dssp HHHHHHHTTCCTHHHHHHHHHHSCCSSCC--------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHhccCccccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHcCCCHHHHHHH
Confidence 9999987654321 000 111222222222222 2234458899999999
Q ss_pred hCCCHHHHHHHHHHhCCC
Q 011324 441 VGITVEKLERLIFITRMP 458 (488)
Q Consensus 441 LGIS~etVk~~L~~ar~~ 458 (488)
||||+++|+..+.+++..
T Consensus 166 lgis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 166 MDCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999988654
No 9
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.67 E-value=7.1e-18 Score=153.69 Aligned_cols=144 Identities=9% Similarity=0.030 Sum_probs=114.7
Q ss_pred CCHHHHHHH-hhhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHH
Q 011324 314 LSCRDLKSE-LHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQ 391 (488)
Q Consensus 314 m~eeeLi~~-l~~Gd-~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRn 391 (488)
+++.+|+.+ +..|+ .|++.|+..|.+.|+.+|+++.++..+++|++||+|+++|+++++|++..| .|.+|++.+++|
T Consensus 11 ~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n 89 (184)
T 2q1z_A 11 TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARN 89 (184)
T ss_dssp TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHH
Confidence 677889998 88887 899999999999999999999999899999999999999999999998765 799999999999
Q ss_pred HHHHHHHHhcCCcccc-----------hhH---HHHHHHHHHHHHHH--------HHhcCCCCcHHHHHHHhCCCHHHHH
Q 011324 392 TIRKAIFQHSRTIRLP-----------ENI---YTLLSKVLEAKRLY--------IQEGNHSPDKEDLARRVGITVEKLE 449 (488)
Q Consensus 392 aI~~~IRk~sr~irlP-----------~~v---~e~l~kI~ka~~~L--------~~elgr~pS~eEIAe~LGIS~etVk 449 (488)
.+++++|++.+...++ ... .+....+..+...| ...+..+.+++|||+.||||+++|+
T Consensus 90 ~~~d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~ 169 (184)
T 2q1z_A 90 RRIDGLRKDRQPEPEDLFWGPDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFFGDLTHRELAAETGLPLGTIK 169 (184)
T ss_dssp SCCTTTCSSSCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHH
T ss_pred HHHHHHHhhcccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHH
Confidence 9999999876543221 111 11122233333222 2223347899999999999999999
Q ss_pred HHHHHhCCC
Q 011324 450 RLIFITRMP 458 (488)
Q Consensus 450 ~~L~~ar~~ 458 (488)
..+++++..
T Consensus 170 ~~l~ra~~~ 178 (184)
T 2q1z_A 170 SRIRLALDR 178 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988653
No 10
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.50 E-value=3.2e-14 Score=125.79 Aligned_cols=106 Identities=18% Similarity=0.291 Sum_probs=76.1
Q ss_pred CCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhcCCcccc------------------------
Q 011324 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP------------------------ 407 (488)
Q Consensus 352 g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRnaI~~~IRk~sr~irlP------------------------ 407 (488)
|.+++|++||||++||+++.+||+.+ .+|.||++++++|.+++++|++.+..+.+
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLNEALKTNAILEDSAYFDDEGHNI 79 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhHHHhhhhhhhccCCCCCcccchh
Confidence 67899999999999999999999987 78999999999999999999875432211
Q ss_pred ----------hh----------HHHHHH-HHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhCCC
Q 011324 408 ----------EN----------IYTLLS-KVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMP 458 (488)
Q Consensus 408 ----------~~----------v~e~l~-kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (488)
.. +...+. .+....+.+...+..+.|++|||+.||||.++|+..+++++..
T Consensus 80 ~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 80 NNYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 00 111222 2222222322244568899999999999999999999988654
No 11
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.36 E-value=1e-14 Score=131.74 Aligned_cols=128 Identities=9% Similarity=0.061 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhcCCcccc--
Q 011324 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLP-- 407 (488)
Q Consensus 330 rekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRnaI~~~IRk~sr~irlP-- 407 (488)
|+.|+..|.+.|+.+|+++.++..+++|++||+|+++|+++++|++. ..|.+|++.+++|.+++++|+.......+
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~--~~~~~wl~~ia~n~~~d~~R~~~~~~~~~e~ 80 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRD--VDPRLGLYRMFQGIWASANADGEAQTSQSDA 80 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCS--SCTTHHHHHHHHHHHHHHTTTTSCCCCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCC--CcHHHHHHHHHHHHHHHHhhccCcccCCcch
Confidence 56789999999999999999999999999999999999999999975 36999999999999999998754211001
Q ss_pred ----hhHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 408 ----ENIYTLLSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 408 ----~~v~e~l~kI~ka~~~L~-~elgr~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
..+...+..+....+.+. ..+..+.|++|||+.||||+++|+..+.+++..+
T Consensus 81 ~~~~~~l~~~l~~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~L 137 (157)
T 2lfw_A 81 EGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEI 137 (157)
T ss_dssp SSSSSTTTTTTTTSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 112223333333333322 2334578999999999999999999999887543
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.31 E-value=1.2e-12 Score=129.65 Aligned_cols=131 Identities=11% Similarity=0.013 Sum_probs=103.1
Q ss_pred hcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhcCC
Q 011324 325 SGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRT 403 (488)
Q Consensus 325 ~Gd-~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRnaI~~~IRk~sr~ 403 (488)
.|+ .+|+.|+..|.+.|+.+|++|+++..+++|++||.|+.+|+...+|++. ..|.+|++++++|.+++++|+....
T Consensus 17 ~g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~~~ 94 (286)
T 3n0r_A 17 RGSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLEVG 94 (286)
T ss_dssp ---CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC----C
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccccccC
Confidence 344 6999999999999999999999999999999999999999999999874 4699999999999999999864321
Q ss_pred cc----cchhHHHHHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhCC
Q 011324 404 IR----LPENIYTLLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERLIFITRM 457 (488)
Q Consensus 404 ir----lP~~v~e~l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar~ 457 (488)
.. ....+...+.++....+.+ ......+.+++|||+.||+++++|+..+.+++.
T Consensus 95 ~~~~~~~~~~l~~al~~Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tVks~l~rA~~ 153 (286)
T 3n0r_A 95 HDQGLHAGDDAAQRLMRIAPRSRQAFLLTALEGFTPTEAAQILDCDFGEVERLIGDAQA 153 (286)
T ss_dssp CCCCCCTTSHHHHHHHHHSCHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHhCCHHHeeEEEEEeeCCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 11 1134666666665555543 333445799999999999999999999887653
No 13
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.22 E-value=1.4e-11 Score=104.62 Aligned_cols=84 Identities=18% Similarity=0.156 Sum_probs=72.2
Q ss_pred HHHHHhhhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHH
Q 011324 318 DLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 396 (488)
Q Consensus 318 eLi~~l~~Gd-~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRnaI~~~ 396 (488)
+|+..+..|+ .+++.|+..|.+.|+.+|.++ ++..+++|++||+|+.+|+.+.+|++. ..|.+|++.+++|.++++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~ 89 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSAR--SSARTWLLAIARHVVADH 89 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHH
Confidence 5777777777 899999999999999999999 888899999999999999999999964 369999999999999999
Q ss_pred HHHhcCCc
Q 011324 397 IFQHSRTI 404 (488)
Q Consensus 397 IRk~sr~i 404 (488)
+|++.+..
T Consensus 90 ~R~~~~~~ 97 (112)
T 2o7g_A 90 IRHVRSRP 97 (112)
T ss_dssp TC------
T ss_pred HHHhhccc
Confidence 99876543
No 14
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=99.14 E-value=3.2e-11 Score=97.96 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=68.6
Q ss_pred hhhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhc
Q 011324 323 LHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHS 401 (488)
Q Consensus 323 l~~Gd-~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRnaI~~~IRk~s 401 (488)
+..|+ .+++.|+..|.+.|+.+|.++.++..+++|++||+|+.+|+.+.+|++. ..|.+|++.+++|.+++++|++.
T Consensus 6 ~~~g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 6 STAERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 34566 8999999999999999999999999999999999999999999999874 47999999999999999998765
No 15
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.85 E-value=2.8e-09 Score=103.72 Aligned_cols=142 Identities=6% Similarity=-0.072 Sum_probs=104.2
Q ss_pred HHHHHHHhhhcH-HHHHHHHHHHHHHHHHHHHHccCCCCCHhHHH----HHHHHHHHHhHHhhCCCCCCchhhHHHHHHH
Q 011324 316 CRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLL----QEGSMGLMKSVEKFKPQAGCRFASYAYWWVR 390 (488)
Q Consensus 316 eeeLi~~l~~Gd-~ArekLIesnlrLV~sIAkry~~~g~d~EDLI----QEG~IGL~rAiekFDpskG~rFSTYA~~wIR 390 (488)
++.|+.++..+| .+++.++..|.++++.+............|+. ||.|+.+|+.+..|++.. .|.+|++.+++
T Consensus 84 ~~~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~ 161 (258)
T 3clo_A 84 EDCIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLY 161 (258)
T ss_dssp CHHHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEE
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHH
Confidence 345777887777 78999999999999999988777777888886 999999999999998643 69999999999
Q ss_pred HHHHHHHHHhcCCcc----------cchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 391 QTIRKAIFQHSRTIR----------LPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 391 naI~~~IRk~sr~ir----------lP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
|.+.++.++...... .+..+...+..+....+++......+.|.+|||+.||||+++|+..+++++..+
T Consensus 162 n~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~erevl~L~~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 162 SLSADQRPEQGIYATITQMERGEVETLSLSEEHRNILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp EECSCCCCCSSCCCEEEETTTTEEEECCCHHHHTTSSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHcchhhhhHHHHHHHhhcccccccchhhHHHHccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 988877543211000 011223333334333333221123478999999999999999999999887654
No 16
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=94.05 E-value=0.57 Score=42.95 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=26.4
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHhCCC
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFITRMP 458 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (488)
..+.|.+|||+.||||.++|+.++++++..
T Consensus 201 ~~g~s~~EIA~~lgis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 201 YEELPAKEVAKILETSVSRVSQLKAKALER 230 (239)
T ss_dssp TSCCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 458899999999999999999999887643
No 17
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=93.98 E-value=0.017 Score=63.10 Aligned_cols=34 Identities=32% Similarity=0.570 Sum_probs=13.5
Q ss_pred CCcHHHHHHccCCCCCCCCHHHHHHHHHHHHHHH
Q 011324 253 RNDPLRLFLWGPETRKLLTADEEFELIAQIQDLI 286 (488)
Q Consensus 253 ~~d~l~~YL~~i~~~~lLT~eEE~eL~~~iq~l~ 286 (488)
.+||+++||+++|..||||+++|++|+++|..+.
T Consensus 94 ~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~ 127 (613)
T 3iyd_F 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGI 127 (613)
T ss_dssp -----------C--------CSSSTTTHHHHHHH
T ss_pred CCCcHHHHHHHhcccccCCchhHHHHHHHHHHhH
Confidence 5899999999999999999999999999999853
No 18
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=93.89 E-value=0.032 Score=45.44 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=27.1
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHhCCC
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFITRMP 458 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (488)
+..+.|++|||+.|||+..+|+..+++++..
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4457899999999999999999999988654
No 19
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=92.94 E-value=0.81 Score=48.20 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
.+.|++|||+.||||.++|+.++.+|...+
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RAlkKL 423 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKALRKL 423 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 578999999999999999999998886554
No 20
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=92.72 E-value=0.12 Score=40.18 Aligned_cols=51 Identities=14% Similarity=0.071 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhCCCcc
Q 011324 410 IYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLS 460 (488)
Q Consensus 410 v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar~~lS 460 (488)
+...+..+....+.+...+..+.+.+|||+.||++..+|+..+.+++..+-
T Consensus 10 l~~~l~~L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 10 IRARLQTLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 344455554544444433456899999999999999999999988765543
No 21
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=92.15 E-value=0.15 Score=38.93 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=27.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
.+.|.+|||+.||+|.++|+..+.+++..+
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 589999999999999999999999886654
No 22
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=90.95 E-value=0.14 Score=47.04 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
+..+.|++|||+.||||+++|+.++.+++..+
T Consensus 211 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 211 YYKDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp --------------------------------
T ss_pred HhcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 34577999999999999999999999887654
No 23
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=90.67 E-value=0.18 Score=40.70 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
.+.|++|||+.||||.++|+.++.+++..+
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999999998876543
No 24
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=90.46 E-value=0.063 Score=43.09 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=27.0
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
..+.+.+|||+.|||+..+|+..+.+++..+
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4578999999999999999999998876554
No 25
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=90.39 E-value=0.18 Score=42.43 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
.+.|++|||+.||||.++|+.++.+|...+
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALRKL 67 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 578999999999999999999998876543
No 26
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=89.98 E-value=0.23 Score=37.43 Aligned_cols=31 Identities=19% Similarity=0.099 Sum_probs=26.8
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
..+.|++|||+.+|+|..+|+..+++++..+
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4478999999999999999999998876543
No 27
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=89.96 E-value=0.51 Score=36.44 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
.+.|.+|||+.||+|.++|+..+.++...+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999988775443
No 28
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=89.85 E-value=0.082 Score=43.56 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCcc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPLS 460 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lS 460 (488)
.+.+++|||+.|||+..+|+..+.+++..+-
T Consensus 41 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 41 EGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4789999999999999999999988765543
No 29
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=87.52 E-value=0.29 Score=41.83 Aligned_cols=31 Identities=10% Similarity=-0.088 Sum_probs=26.8
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHhCCC
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFITRMP 458 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (488)
+..+.|++|||+.||+|+.+|+..+++++..
T Consensus 38 ~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 38 YLEDYSLSEIADTFNVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3457899999999999999999999887654
No 30
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.92 E-value=1.4 Score=35.50 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=23.2
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
|..||..|||+.+|+|..+|+.-|..
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~ 47 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQ 47 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 45899999999999999999988864
No 31
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=85.87 E-value=1.1 Score=30.56 Aligned_cols=26 Identities=4% Similarity=0.068 Sum_probs=22.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhC
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITR 456 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar 456 (488)
+.+..|||+.|||+..+|..++....
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhHH
Confidence 57999999999999999999987543
No 32
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=85.84 E-value=0.081 Score=42.97 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCcc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPLS 460 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lS 460 (488)
.+.+.+|||+.|||+..+|+..+.+++..+-
T Consensus 43 ~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 43 KGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3789999999999999999999988866543
No 33
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=85.17 E-value=0.72 Score=33.96 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCccc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (488)
.+.+.+|||+.||+++.+|+..+.+++..+-.
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 36799999999999999999999887655433
No 34
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=84.77 E-value=0.65 Score=38.03 Aligned_cols=32 Identities=9% Similarity=0.121 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCccc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (488)
.+.+.+|||+.|||++.+|+..+..+...+-+
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 47899999999999999999999887655543
No 35
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=83.39 E-value=3 Score=43.37 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
.+.|++|||+.||||.++|+.++.+|...+
T Consensus 379 e~~Tl~EIA~~lgiS~erVrqi~~rAl~kL 408 (423)
T 2a6h_F 379 REHTLEEVGAFFGVTRERIRQIENKALRKL 408 (423)
T ss_dssp -----CHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 578999999999999999999988876544
No 36
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=83.16 E-value=1.9 Score=32.56 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
..+.+..|||+.||++..+|+..+.+++..+
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3467999999999999999999998776544
No 37
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=82.96 E-value=1.3 Score=32.07 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.|..|||+.||++..+|...+..
T Consensus 31 g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 31 GYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHh
Confidence 579999999999999999988753
No 38
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=80.84 E-value=0.73 Score=38.51 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=26.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (488)
+.+.+|||+.|||++.+|+..+.++...+..
T Consensus 49 G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 49 GFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 6799999999999999999999887665544
No 39
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=80.41 E-value=1.6 Score=37.28 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCC
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMP 458 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (488)
.+.|+.|||+.+|+|..+|+..+++++..
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 46899999999999999999999887643
No 40
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=74.69 E-value=5.4 Score=36.52 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 414 l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..++.+.+..+..+.|..||..|||+.+|++..+|...+..
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~ 47 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIA 47 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHH
Confidence 34455555666666777899999999999999999888763
No 41
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=74.48 E-value=1.9 Score=40.45 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=27.5
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHhCCCcc
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLS 460 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ar~~lS 460 (488)
..+.|.+|||+.|||++.+|+..+..++..+-
T Consensus 186 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 186 AVGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34789999999999999999999988766543
No 42
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=71.53 E-value=1.9 Score=40.41 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCcc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPLS 460 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lS 460 (488)
.+.|.+|||+.|||++.+|+..+..++.++-
T Consensus 189 ~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 189 KGKTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3689999999999999999999988766543
No 43
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=70.98 E-value=5.4 Score=30.60 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=23.3
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.+...+..|||+.+|++..+|..++..
T Consensus 22 ~~~~~s~~eLA~~lglsr~tv~~~l~~ 48 (67)
T 2heo_A 22 DGGPVAIFQLVKKCQVPKKTLNQVLYR 48 (67)
T ss_dssp HCSCEEHHHHHHHHCSCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 344679999999999999999999874
No 44
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=69.41 E-value=11 Score=28.94 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+....+.+..+. +.|..|+|+.+|++..+|..+..
T Consensus 13 l~~~l~~~r~~~--gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 13 LKAIWEKKKNEL--GLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHHHHHHHHHHH--TCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHhCcCHHHHHHHHc
Confidence 333444444443 48999999999999999998875
No 45
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=69.39 E-value=2.9 Score=39.51 Aligned_cols=32 Identities=9% Similarity=0.011 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCccc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (488)
.+.|.+|||+.||||+.+|+..+..++.++..
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMRKLNS 220 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 36899999999999999999999887665543
No 46
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=66.43 E-value=9.4 Score=30.56 Aligned_cols=29 Identities=0% Similarity=0.088 Sum_probs=24.3
Q ss_pred HHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 425 IQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 425 ~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+.+ ..+..|||+.+|+|+.+|+..+..
T Consensus 11 L~~~g-~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 11 LALRG-RMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp HHHSC-SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHcC-CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 34455 789999999999999999988764
No 47
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=65.30 E-value=13 Score=30.16 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+.++..-+...+...++.++||+.+|++...+..+.+..
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444455566667899999999999999998887654
No 48
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=64.39 E-value=14 Score=29.72 Aligned_cols=27 Identities=15% Similarity=0.461 Sum_probs=23.5
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
|...|..|||+.||++..+|...|..-
T Consensus 25 g~~~t~~eLA~~Lgvsr~tV~~~L~~L 51 (81)
T 1qbj_A 25 GKATTAHDLSGKLGTPKKEINRVLYSL 51 (81)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 346799999999999999999998754
No 49
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=63.05 E-value=3.9 Score=39.45 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCccc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (488)
.+.|.+|||+.|||++.+|+..+..++.++-.
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 36899999999999999999999887665533
No 50
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=62.53 E-value=11 Score=29.37 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.++..|||+.+|++..+|...+..
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 689999999999999999998864
No 51
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=61.94 E-value=20 Score=27.84 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011324 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 413 ~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
...++.+.++.+.... +.|.+++|+.+|++..+|..+..
T Consensus 14 ~~~~l~~~l~~~R~~~--glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 14 DARRLKAIYEKKKNEL--GLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHHHHHHHHHHHHHH--TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHc
Confidence 3444555555554444 48999999999999999988875
No 52
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=61.74 E-value=37 Score=27.97 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 381 FSTYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.-.|+.+.+.+.+.+.+.+......++......+..+ . ..+ +.+..+||+.+|++..+|..++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~-~~~-~~~~~~la~~l~~~~~tvs~~l~~ 71 (138)
T 1jgs_A 7 PLGRLIHMVNQKKDRLLNEYLSPLDITAAQFKVLCSI-------R-CAA-CITPVELKKVLSVDLGALTRMLDR 71 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHH-------H-HHS-SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH-------H-hcC-CCCHHHHHHHHCCChHHHHHHHHH
Confidence 3456677777777777776655445554333333332 1 123 579999999999999999988865
No 53
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=61.69 E-value=15 Score=29.83 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcC-CCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 417 VLEAKRLYIQEGN-HSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 417 I~ka~~~L~~elg-r~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.++..-+...+. ..++.++||+.+|++...+..+.+.
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444555565 6889999999999999999888764
No 54
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=60.91 E-value=11 Score=31.01 Aligned_cols=29 Identities=7% Similarity=0.124 Sum_probs=24.4
Q ss_pred HHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 425 IQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 425 ~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+.| ..+..|||+.+|+|+.+|+..+..
T Consensus 11 L~~~g-~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 11 LALQG-RMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp HHHSC-SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHcC-CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 34445 789999999999999999998864
No 55
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=60.23 E-value=13 Score=30.54 Aligned_cols=39 Identities=28% Similarity=0.306 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+.++..-+...+...+++++||+.+|++...+..+++..
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444455555667899999999999999998887654
No 56
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=60.01 E-value=14 Score=29.27 Aligned_cols=26 Identities=15% Similarity=0.474 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
...|..|||+.||++..+|...+..-
T Consensus 30 ~~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 30 KATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp SCEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35799999999999999999998753
No 57
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=59.99 E-value=42 Score=27.90 Aligned_cols=64 Identities=6% Similarity=0.144 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 382 STYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
-.|..+.+.+.+.+.+.+......+.......+..|. . .+ +.+..|||+.+|++..+|..++..
T Consensus 11 l~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~-------~-~~-~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 11 ISFDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIE-------A-NE-PISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHH-------H-HS-SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH-------H-cC-CcCHHHHHHHHCCCHhhHHHHHHH
Confidence 3455666666777777666554455544333333331 1 23 689999999999999999988764
No 58
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=59.95 E-value=48 Score=27.17 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 384 YA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
|..+.+.+.+...+.+......+.......+..+ . ..+ ..+..|||+.+|++..+|..++..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~-~~~-~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 5 GLLSIILRSHRVFIGRELGHLNLTDAQVACLLRI-------H-REP-GIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTCCHHHHHHHHHH-------H-HST-TCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-------H-HcC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4455566666666665544344443333332222 2 223 689999999999999999998864
No 59
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=59.64 E-value=18 Score=29.44 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 419 ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
++..-+...+...++.++||+.+|++...+..+++..
T Consensus 9 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 9 NVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455556667899999999999999998887643
No 60
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=59.25 E-value=23 Score=25.98 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=20.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..++|+.+|++..+|..+..
T Consensus 26 g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 26 GLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 58999999999999999988765
No 61
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=58.86 E-value=10 Score=31.01 Aligned_cols=23 Identities=9% Similarity=0.355 Sum_probs=21.6
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHH
Q 011324 432 PDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.|..|||+.|||+...|+..|..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 89999999999999999999874
No 62
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=57.54 E-value=18 Score=32.73 Aligned_cols=39 Identities=5% Similarity=0.081 Sum_probs=32.1
Q ss_pred HHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhCCCccccc
Q 011324 425 IQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQ 463 (488)
Q Consensus 425 ~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD~ 463 (488)
...+..+.+.+|||+.|+++..+|+..+...+.++....
T Consensus 168 L~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~~ 206 (225)
T 3klo_A 168 IKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKN 206 (225)
T ss_dssp HHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSS
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCC
Confidence 333445789999999999999999999999988876643
No 63
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=57.35 E-value=23 Score=28.45 Aligned_cols=32 Identities=6% Similarity=-0.016 Sum_probs=24.9
Q ss_pred HHHhcCC-CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 424 YIQEGNH-SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 424 L~~elgr-~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+...+.. .++.++||+.+|++...+..+++..
T Consensus 11 i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 11 IEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444544 6899999999999999998887643
No 64
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=56.75 E-value=47 Score=27.32 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 383 TYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.|..+.+.+.+.+.+.+......++......+.. +....+...+..|||+.+|++..+|..++..
T Consensus 9 ~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~-------l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~ 73 (141)
T 3bro_A 9 GRLLKIASNQMSTRFDIFAKKYDLTGTQMTIIDY-------LSRNKNKEVLQRDLESEFSIKSSTATVLLQR 73 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH-------HHHTTTSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------HHHCCCCCcCHHHHHHHHCCCcchHHHHHHH
Confidence 3445555555555555443333344332222222 2222333679999999999999999988865
No 65
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=56.30 E-value=24 Score=26.88 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=23.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
+.|.+|+|+.+|++..+|..+.. .+...+++
T Consensus 27 gltq~elA~~~gis~~~is~~e~-g~~~~~~~ 57 (83)
T 3f6w_A 27 GITQKELAARLGRPQSFVSKTEN-AERRLDVI 57 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT-TSSCCCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC-CCCCCCHH
Confidence 48999999999999999988875 33334443
No 66
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=55.86 E-value=9.6 Score=35.78 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=25.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCC
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMP 458 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (488)
+.|.+|||+.||||..+|..++..|+-.
T Consensus 24 g~tQ~eIA~~lGiSr~~VSR~L~~A~~~ 51 (192)
T 1zx4_A 24 GMSQKDIAAKEGLSQAKVTRALQAASAP 51 (192)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHhccc
Confidence 5899999999999999999999998743
No 67
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=55.47 E-value=29 Score=25.74 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..++|+.+|++..+|..+..
T Consensus 23 glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 23 GVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC
Confidence 58999999999999999988765
No 68
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=55.00 E-value=55 Score=27.29 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|..++..
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~ 79 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDR 79 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHH
Confidence 689999999999999999998875
No 69
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=54.89 E-value=37 Score=28.89 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|..++..
T Consensus 63 ~~t~~ela~~l~is~~tvs~~l~~ 86 (162)
T 2fa5_A 63 GSSASEVSDRTAMDKVAVSRAVAR 86 (162)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999999999999999988764
No 70
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=54.88 E-value=6.1 Score=27.13 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.+..|||+.+|++..+|..++..
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 379999999999999999988654
No 71
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=54.29 E-value=20 Score=26.02 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.|..++|+.+|++..+|..+..-
T Consensus 14 glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 14 GLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 589999999999999999988753
No 72
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=54.23 E-value=57 Score=27.43 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 382 STYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..|..+++.+.+.+.+.+......++......+..| . ..+ ..+..|||+.+|++..+|..++..
T Consensus 21 l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~-~~~-~~t~~ela~~l~~s~~tvs~~l~~ 84 (153)
T 2pex_A 21 LSFALYSANLAMHKLYRGLLKALDLTYPQYLVMLVL-------W-ETD-ERSVSEIGERLYLDSATLTPLLKR 84 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH-------H-HSC-SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------H-hCC-CcCHHHHHHHhCCCcccHHHHHHH
Confidence 446666666677777766554444543333332222 2 233 679999999999999999998864
No 73
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=54.15 E-value=26 Score=26.61 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=23.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
+.|.+++|+.+|++..+|..+.. .....+++
T Consensus 24 glsq~~lA~~~gis~~~i~~~e~-g~~~~~~~ 54 (82)
T 3s8q_A 24 GMTQEDLAYKSNLDRTYISGIER-NSRNLTIK 54 (82)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT-TCCCCBHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHC-CCCCCCHH
Confidence 58999999999999999988765 33344444
No 74
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=53.91 E-value=14 Score=31.15 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=19.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~ 451 (488)
+.|+.|||+.||+|..+|-.+
T Consensus 58 e~TQREIA~~lGiS~stISRi 78 (101)
T 1jhg_A 58 EMSQRELKNELGAGIATITRG 78 (101)
T ss_dssp CSCHHHHHHHHCCCHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhhhHH
Confidence 589999999999999999777
No 75
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=53.64 E-value=11 Score=27.54 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=21.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.|..++|+.+|++..+|..+..-
T Consensus 16 glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 16 KMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 589999999999999999988763
No 76
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=53.62 E-value=35 Score=24.92 Aligned_cols=23 Identities=0% Similarity=-0.148 Sum_probs=20.8
Q ss_pred CCcHHHHHHHhC--CCHHHHHHHHH
Q 011324 431 SPDKEDLARRVG--ITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LG--IS~etVk~~L~ 453 (488)
+.|.+|+|+.+| ++..+|..+..
T Consensus 21 glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 21 GLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp TCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 589999999999 99999988776
No 77
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=53.09 E-value=50 Score=27.22 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 383 SYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 383 TYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.|..+.+.+.+.+.+.+......+.......+..| ....+.+.+..|||+.+|++..+|..++..
T Consensus 6 ~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~vL~~l-------~~~~~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 6 SYLFRMISHEMKQKADQKLEQFDITNEQGHTLGYL-------YAHQQDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH-------HHSTTTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HhcCCCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 34555566666666665544344443333333222 222223679999999999999999988764
No 78
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=52.56 E-value=19 Score=30.36 Aligned_cols=23 Identities=22% Similarity=0.062 Sum_probs=15.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+|+|+.+||+...|..+-.
T Consensus 20 glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 20 RITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp TCCHHHHHHHSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 46777777777777777766554
No 79
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=52.36 E-value=31 Score=26.39 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..++|+.+|++..+|..+..
T Consensus 25 glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 25 GWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 58999999999999999998876
No 80
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=52.09 E-value=19 Score=31.83 Aligned_cols=29 Identities=31% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 425 IQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 425 ~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.++.+ ..+..|||+.+|+|..+|...+++
T Consensus 12 L~~~~-~~s~~~la~~lg~s~~tv~~rl~~ 40 (162)
T 3i4p_A 12 LQEDS-TLAVADLAKKVGLSTTPCWRRIQK 40 (162)
T ss_dssp HTTCS-CSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHCC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33444 569999999999999999999875
No 81
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=51.81 E-value=35 Score=25.76 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..|+|+.+|++..+|..+..
T Consensus 23 glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 23 SLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 58999999999999999988765
No 82
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=51.71 E-value=12 Score=28.71 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.8
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHH
Q 011324 432 PDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+|..|||+.+|++..+|..++.-
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 47899999999999999999974
No 83
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=51.49 E-value=27 Score=32.83 Aligned_cols=51 Identities=18% Similarity=0.194 Sum_probs=41.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 405 rlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
.+|......+...-+....|...+....|-+|||+.+|++..+|+.=+...
T Consensus 2 ~i~~~~~~Rl~~y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~~ 52 (211)
T 2dt5_A 2 KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYF 52 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 467667777777777777887777767899999999999999999887754
No 84
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=51.38 E-value=26 Score=31.70 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHhCCC-HHHHHHHHH
Q 011324 419 EAKRLYIQEGNHSPDKEDLARRVGIT-VEKLERLIF 453 (488)
Q Consensus 419 ka~~~L~~elgr~pS~eEIAe~LGIS-~etVk~~L~ 453 (488)
+.++.+..+.|-.||..|||+.+|++ ..+|...+.
T Consensus 13 ~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 13 DLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 33344444556457999999999999 999988765
No 85
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=51.34 E-value=33 Score=28.70 Aligned_cols=65 Identities=6% Similarity=0.071 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhc-CCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 381 FASYAYWWVRQTIRKAIFQHS-RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 381 FSTYA~~wIRnaI~~~IRk~s-r~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+-.|...++.+.+.+.+.+.- ....+.......+..| ...+ ..+..|||+.+|++..+|..++..
T Consensus 12 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l--------~~~~-~~t~~ela~~l~~~~~tvs~~l~~ 77 (148)
T 3nrv_A 12 HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL--------SSAS-DCSVQKISDILGLDKAAVSRTVKK 77 (148)
T ss_dssp CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHH--------HHSS-SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH--------HcCC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 455666666666666665432 2223433322222222 2234 789999999999999999988764
No 86
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=51.32 E-value=13 Score=33.51 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=24.2
Q ss_pred HHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 425 IQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 425 ~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.+..+ ..+..|||+.+|+|..+|...+..
T Consensus 36 L~~~~-~~s~~eLA~~lglS~~tv~~rl~~ 64 (171)
T 2e1c_A 36 LQNDG-KAPLREISKITGLAESTIHERIRK 64 (171)
T ss_dssp HHHCT-TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34445 589999999999999999998865
No 87
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=50.81 E-value=29 Score=28.18 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
+.+.++.+.... +.|.+|+|+.+||+..+|..+.. .+...+++
T Consensus 29 ig~~lr~~R~~~--gltq~elA~~~gis~~~is~iE~-G~~~ps~~ 71 (99)
T 3g5g_A 29 VSFVIKKIRLEK--GMTQEDLAYKSNLDRTYISGIER-NSRNLTIK 71 (99)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHT-TCSCCBHH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHC-CCCCCCHH
Confidence 333444444443 58999999999999999988765 33344444
No 88
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=50.61 E-value=21 Score=30.15 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=26.8
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHhCCC
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFITRMP 458 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ar~~ 458 (488)
+-.+.|..|||+.||||-.+|..++..++..
T Consensus 31 Yv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 31 LVDGKPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp HTTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3346899999999999999999999988754
No 89
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=50.58 E-value=36 Score=27.78 Aligned_cols=54 Identities=15% Similarity=0.051 Sum_probs=32.7
Q ss_pred HHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHH
Q 011324 342 VHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRK 395 (488)
Q Consensus 342 ~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRnaI~~ 395 (488)
..++..........+||.+.-.+.--.--..|...-|..|..|+..+--+....
T Consensus 13 ~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~ 66 (113)
T 3oio_A 13 VSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQ 66 (113)
T ss_dssp HHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 334444445568889998887666555555565555777777766653333333
No 90
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=50.36 E-value=23 Score=25.50 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..++|+.+|++..+|..+..
T Consensus 18 g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 47999999999999999988765
No 91
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=50.23 E-value=58 Score=27.31 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 382 STYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..|..+.+.+.+.+.+.+......+.......+.. |. ..+...+..|||+.+|++..+|..++..
T Consensus 13 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~-------l~-~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 13 IGFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVL-------AC-EQAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHH-------HH-HSTTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------HH-hCCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 34555666666666666544333444332222222 22 2332469999999999999999998865
No 92
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=50.09 E-value=21 Score=28.78 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=25.5
Q ss_pred HHHHHhcCCCCcHHHHHHHhCCCHH-HHHHHHHH
Q 011324 422 RLYIQEGNHSPDKEDLARRVGITVE-KLERLIFI 454 (488)
Q Consensus 422 ~~L~~elgr~pS~eEIAe~LGIS~e-tVk~~L~~ 454 (488)
-.+....| ..+..|||+.|||+.. .|+..|..
T Consensus 17 L~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 17 CDYLFNVS-DSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp HHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 34444555 6799999999999999 99998864
No 93
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=49.69 E-value=33 Score=25.48 Aligned_cols=32 Identities=6% Similarity=0.046 Sum_probs=24.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
+.|..++|+.+|++..+|..+..--....+++
T Consensus 20 g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~ 51 (78)
T 3b7h_A 20 NLTINRVATLAGLNQSTVNAMFEGRSKRPTIT 51 (78)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHH
Confidence 58999999999999999988875333144544
No 94
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=49.32 E-value=26 Score=26.43 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+++|+.+||+..+|..+..
T Consensus 15 glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 15 SLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 58999999999999999988765
No 95
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=49.32 E-value=26 Score=27.05 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=21.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..|+|+.+|++..+|..+..
T Consensus 31 glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 31 GLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 58999999999999999998876
No 96
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=49.16 E-value=79 Score=25.79 Aligned_cols=64 Identities=9% Similarity=0.080 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 381 FSTYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
...|..+.+.+.+.+.+.+.... .+.......+..| . ..+ ..+..|||+.+|++..+|..++..
T Consensus 12 ~l~~~l~~~~~~~~~~~~~~~~~-~l~~~~~~iL~~l-------~-~~~-~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 12 QIGFILRQANQRYAALFANGIGN-GLTPTQWAALVRL-------G-ETG-PCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHH-------H-HHS-SBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHH-------H-HcC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34455566666677777665544 4544333333322 1 223 689999999999999999998875
No 97
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=49.07 E-value=28 Score=29.92 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=23.8
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 426 QEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 426 ~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+..+ ..+..|||+.+|++..+|...+..
T Consensus 19 ~~~~-~~s~~ela~~lg~s~~tv~~~l~~ 46 (151)
T 2dbb_A 19 SENS-RLTYRELADILNTTRQRIARRIDK 46 (151)
T ss_dssp HHCT-TCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444 589999999999999999998865
No 98
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=49.03 E-value=29 Score=29.74 Aligned_cols=29 Identities=7% Similarity=0.186 Sum_probs=24.2
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 426 QEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 426 ~elgr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+..+ ..+..|||+.+|+|..+|...+..-
T Consensus 15 ~~~~-~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 15 KKDS-RLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp HHCS-CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444 5899999999999999999988753
No 99
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=49.02 E-value=39 Score=27.25 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=26.2
Q ss_pred cCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHH
Q 011324 349 QGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWV 389 (488)
Q Consensus 349 ~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wI 389 (488)
.......+||.....+.--.--..|...-|..|..|+..+-
T Consensus 15 ~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~R 55 (108)
T 3mn2_A 15 WMRPITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVR 55 (108)
T ss_dssp TTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34558888888886666555555555545666777766543
No 100
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=49.02 E-value=35 Score=27.58 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHH
Q 011324 344 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388 (488)
Q Consensus 344 IAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~w 388 (488)
++.......+..+||...-.+.--.--..|...-|..|..|+..+
T Consensus 13 ~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~ 57 (108)
T 3oou_A 13 YITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRY 57 (108)
T ss_dssp HHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH
Confidence 333333456888888888666655555555544566677666554
No 101
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=48.52 E-value=65 Score=28.59 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=22.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..|.++||..+|++.++|-.++..-
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l 191 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDF 191 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 5699999999999999999988753
No 102
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.28 E-value=78 Score=26.04 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 384 YA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+..+.+.+.+...+.+......++..-...+..| ....+ ..+..|||+.+|++..+|..++..
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~~~~~-~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 13 TLLAQTSRAWRAELDRRLSHLGLSQARWLVLLHL-------ARHRD-SPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHH-------HHCSS-CCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------HHcCC-CCCHHHHHHHhCCChhhHHHHHHH
Confidence 3444455555555554433333443333222222 12233 679999999999999999988864
No 103
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=47.58 E-value=24 Score=29.20 Aligned_cols=34 Identities=9% Similarity=-0.030 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 421 ~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
...+...+...+++++||+.+|++...+..+++.
T Consensus 13 ~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 13 CTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3334444555789999999999999999888765
No 104
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=47.36 E-value=30 Score=25.52 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=20.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..++|+.+|++..+|..+..
T Consensus 18 gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 18 KIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57999999999999999988765
No 105
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=47.23 E-value=29 Score=32.64 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=40.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 405 rlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
.+|......+...-+....|...+....|-+|||+.+|++..+|+.=+...
T Consensus 7 ~i~~~~~~Rl~~Y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~f 57 (215)
T 2vt3_A 7 KIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYF 57 (215)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHCCCHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 578777788888778888888887777899999999999999999887654
No 106
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=46.67 E-value=43 Score=27.71 Aligned_cols=36 Identities=8% Similarity=0.023 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011324 416 KVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 416 kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
.|-+.++.+.... +.|.+|+|+.+|++..+|..+-.
T Consensus 36 ~lG~~ir~~R~~~--glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 36 EIGDRLKQARLNR--DLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHcCCCHHHHHHHHC
Confidence 3444444444443 59999999999999999988753
No 107
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=46.44 E-value=33 Score=29.54 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.7
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 426 QEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 426 ~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+..+ ..+..|||+.+|+|..+|...+..
T Consensus 18 ~~~~-~~s~~ela~~lg~s~~tv~~~l~~ 45 (152)
T 2cg4_A 18 MGNA-RTAYAELAKQFGVSPETIHVRVEK 45 (152)
T ss_dssp HHCT-TSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3344 689999999999999999998864
No 108
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=46.40 E-value=53 Score=27.11 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|..++..
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHH
Confidence 689999999999999999988864
No 109
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=46.18 E-value=34 Score=26.90 Aligned_cols=24 Identities=8% Similarity=0.285 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 011324 430 HSPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
++.|..|+|+.+|++..+|..+..
T Consensus 21 ~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 358999999999999999988765
No 110
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=45.80 E-value=43 Score=26.02 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=23.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
+.|.+|+|+.+|++..+|..+.. .....+++
T Consensus 27 gltq~elA~~~gis~~~is~~E~-G~~~p~~~ 57 (86)
T 3eus_A 27 GLTQADLAERLDKPQSFVAKVET-RERRLDVI 57 (86)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHT-TSSCCBHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHC-CCCCCCHH
Confidence 58999999999999999988765 33344544
No 111
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=45.76 E-value=86 Score=27.16 Aligned_cols=65 Identities=15% Similarity=0.152 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 382 STYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..|..+.+.+.+.+.+.+......+...-...+..| . ..+...+..|||+.+|++..+|-.++..
T Consensus 27 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~L-------~-~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 91 (166)
T 3deu_A 27 LGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNI-------H-QLPPDQSQIQLAKAIGIEQPSLVRTLDQ 91 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH-------H-HSCSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH-------H-HcCCCCCHHHHHHHHCCCHhhHHHHHHH
Confidence 455666667777777766555444543333222222 2 2233689999999999999999988764
No 112
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=45.72 E-value=87 Score=25.78 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 384 YAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 384 YA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
|..+.+.+.+...+........++......+..| . ..+ ..+..|||+.+|++..+|..++..
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l-------~-~~~-~~t~~~la~~l~~s~~~vs~~l~~ 66 (144)
T 1lj9_A 5 REIGMIARALDSISNIEFKELSLTRGQYLYLVRV-------C-ENP-GIIQEKIAELIKVDRTTAARAIKR 66 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTCTTTHHHHHHHH-------H-HST-TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------H-HCc-CcCHHHHHHHHCCCHhHHHHHHHH
Confidence 4455555566666655544444444333333322 1 223 579999999999999999988865
No 113
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=45.66 E-value=13 Score=32.77 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=26.7
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHhCCCcc
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFITRMPLS 460 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ar~~lS 460 (488)
..+.+.+|||+.||++..+|+..+...+.++-
T Consensus 155 ~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 155 IRGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HcCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 34679999999999999999988887766553
No 114
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=45.55 E-value=19 Score=31.14 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=23.7
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 426 QEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 426 ~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
...+ ..+..|||+.+|++..+|...+..
T Consensus 17 ~~~~-~~s~~ela~~lg~s~~tv~~~l~~ 44 (150)
T 2w25_A 17 AADG-RATLSELATRAGLSVSAVQSRVRR 44 (150)
T ss_dssp HHCT-TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3344 589999999999999999998864
No 115
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=44.93 E-value=42 Score=28.45 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 419 ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
..++.+.... +.|.+|+|+.+|++..+|..+..--....+++
T Consensus 43 ~~L~~~R~~~--glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~ 84 (120)
T 2o38_A 43 YALNAVIDRA--RLSQAAAAARLGINQPKVSALRNYKLEGFSVE 84 (120)
T ss_dssp HHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHH
T ss_pred HHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHH
Confidence 3334444333 58999999999999999988765322255655
No 116
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=44.93 E-value=35 Score=28.24 Aligned_cols=55 Identities=13% Similarity=0.025 Sum_probs=32.3
Q ss_pred HHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHH
Q 011324 341 VVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA 396 (488)
Q Consensus 341 V~sIAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRnaI~~~ 396 (488)
|..++.......+..+||.+...+.--.--..|... |..|..|+..+-.+.....
T Consensus 12 ~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~~l 66 (120)
T 3mkl_A 12 VCTVINNNIAHEWTLARIASELLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQL 66 (120)
T ss_dssp HHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 333333334456788888887666655555556555 7777777666543333333
No 117
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=44.54 E-value=36 Score=29.72 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=23.7
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 426 QEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 426 ~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+..+ ..+..|||+.+|+|..+|...+..
T Consensus 20 ~~~~-~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 20 QENG-RLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp HHCT-TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3445 579999999999999999998875
No 118
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=44.42 E-value=24 Score=29.68 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.++..-+...+...++.++||+.+|++...+..+++.
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33344445555566789999999999999999887654
No 119
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=44.05 E-value=38 Score=29.18 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=23.6
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 426 QEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 426 ~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+..+ ..+..|||+.+|+|..+|...+..
T Consensus 17 ~~~~-~~s~~ela~~lg~s~~tv~~~l~~ 44 (151)
T 2cyy_A 17 QNDG-KAPLREISKITGLAESTIHERIRK 44 (151)
T ss_dssp HHCT-TCCHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3344 589999999999999999998764
No 120
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=43.90 E-value=46 Score=24.05 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHh-----CCCHHHHHHHHHH
Q 011324 430 HSPDKEDLARRV-----GITVEKLERLIFI 454 (488)
Q Consensus 430 r~pS~eEIAe~L-----GIS~etVk~~L~~ 454 (488)
..+|.+||++.| +++..+|..-+..
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~ 47 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIKE 47 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 378999999999 9999999998873
No 121
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=43.74 E-value=49 Score=28.33 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 382 STYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..|...++.+.+.+.+.+......+.......+..| .. .+ +.+..|||+.+|++..+|..++..
T Consensus 27 l~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l-------~~-~~-~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 27 LPYLLTRITHIWSSELNQALASEKLPTPKLRLLSSL-------SA-YG-ELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH-------HH-HS-EEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------Hh-CC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444555555555544332223333323223222 11 23 679999999999999999988764
No 122
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=43.36 E-value=14 Score=32.93 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCccc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (488)
.+.+.+|||+.|+++..+|+..+...+.++-.
T Consensus 168 ~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 168 QGLPNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 35799999999999999999998877665543
No 123
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=43.17 E-value=48 Score=27.86 Aligned_cols=28 Identities=11% Similarity=0.241 Sum_probs=23.7
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 426 QEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 426 ~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
...+ .++..|||+.+|++..+|..++..
T Consensus 18 ~~~~-~~~~~ela~~l~vs~~tvs~~l~~ 45 (142)
T 1on2_A 18 EEKG-YARVSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp HHHS-SCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhcC-CCCHHHHHHHhCCCHHHHHHHHHH
Confidence 3344 689999999999999999998764
No 124
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=43.13 E-value=29 Score=24.76 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=20.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..++|+.+|++..+|..+..
T Consensus 14 g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 14 KISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 58999999999999999988875
No 125
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=43.01 E-value=55 Score=27.81 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 382 STYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..|..+.+.+.+.+.+.+......+.......+.. +. ..+ ..+..|||+.+|++..+|..++..
T Consensus 26 l~~~l~~~~~~~~~~~~~~l~~~~lt~~~~~iL~~-------l~-~~~-~~t~~ela~~l~is~~tvs~~l~~ 89 (162)
T 3cjn_A 26 APYLMNRIMGRYNANLRKEMTALGLSTAKMRALAI-------LS-AKD-GLPIGTLGIFAVVEQSTLSRALDG 89 (162)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTCCHHHHHHHHH-------HH-HSC-SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------HH-HCC-CCCHHHHHHHHCCChhHHHHHHHH
Confidence 34555556666666555433222233222222222 21 233 679999999999999999998875
No 126
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=42.79 E-value=79 Score=27.80 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..|.++||..+|++.++|-.++..-
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L 193 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYF 193 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 5699999999999999999988753
No 127
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=42.50 E-value=29 Score=32.78 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=41.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 405 rlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.+|......+...-+....|..++....|-+|||+.+|++..+|++=+..
T Consensus 6 ~ip~~ti~RL~~Y~r~l~~l~~~g~~~isS~ela~~~gv~~~qiRkDls~ 55 (212)
T 3keo_A 6 SIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSY 55 (212)
T ss_dssp CCCHHHHTTHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHCCCeEECHHHHHHHHCCCHHHHHHHHHH
Confidence 57777777777777777788877777789999999999999999988764
No 128
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=42.48 E-value=39 Score=30.18 Aligned_cols=29 Identities=7% Similarity=0.002 Sum_probs=24.2
Q ss_pred HhcCCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 426 QEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 426 ~elgr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+..+ ..+..|||+.+|+|..+|..++..-
T Consensus 27 ~~~~-~~s~~eLA~~lglS~~tv~~~l~~L 55 (171)
T 2ia0_A 27 KKDA-RLTISELSEQLKKPESTIHFRIKKL 55 (171)
T ss_dssp HHCT-TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444 5899999999999999999998753
No 129
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=42.27 E-value=18 Score=28.39 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..|++|.|+.|||+..++..+.+.
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHc
Confidence 469999999999999999999875
No 130
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=41.89 E-value=53 Score=27.36 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 382 ASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 382 STYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
-.|..+++.+.+.+.+.+......++......+..| . ..+ +.+..|||+.+|++..+|..++..
T Consensus 10 l~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l-------~-~~~-~~t~~eLa~~l~~~~~tvs~~l~~ 73 (140)
T 3hsr_A 10 LCFLFYVSSKEIIKKYTNYLKEYDLTYTGYIVLMAI-------E-NDE-KLNIKKLGERVFLDSGTLTPLLKK 73 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHS-------C-TTC-EEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------H-HcC-CcCHHHHHHHHCCChhhHHHHHHH
Confidence 345555566666666655443334443322222222 1 122 579999999999999999988764
No 131
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=41.81 E-value=44 Score=25.96 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=21.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+|+|+.+||+..+|..+..
T Consensus 26 glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 26 GLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 68999999999999999988776
No 132
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=41.61 E-value=60 Score=26.87 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
-|+..|||+.+|++..+|+.++..
T Consensus 33 lPs~~~La~~~~vSr~tvr~al~~ 56 (113)
T 3tqn_A 33 IPSIRKISTEYQINPLTVSKAYQS 56 (113)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHH
Confidence 479999999999999999999874
No 133
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=41.40 E-value=64 Score=27.59 Aligned_cols=65 Identities=20% Similarity=0.189 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 381 FSTYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
...|..+.+.+.+.+.+.+......+.......+..| . ..+ +.+..|||+.+|++..+|..++..
T Consensus 19 ~l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~iL~~l-------~-~~~-~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 19 RLSYMIARVDRIISKYLTEHLSALEISLPQFTALSVL-------A-AKP-NLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH-------H-HCT-TCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH-------H-HCC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4456666666666666655443334443333333222 1 234 689999999999999999988764
No 134
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=41.22 E-value=35 Score=26.09 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=24.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
+.|.+|+|+.+||+..+|..+..--+...+++
T Consensus 23 gltq~elA~~~gis~~~is~~E~G~~~~p~~~ 54 (78)
T 3qq6_A 23 GYSLSELAEKAGVAKSYLSSIERNLQTNPSIQ 54 (78)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHH
Confidence 68999999999999999988875313444544
No 135
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=41.09 E-value=55 Score=26.76 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|..++..
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQR 70 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHH
Confidence 679999999999999999988765
No 136
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=40.85 E-value=49 Score=27.09 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=19.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+|+|+.+|++..+|..+..
T Consensus 34 gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 34 GWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57899999999999988887754
No 137
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=40.72 E-value=53 Score=29.63 Aligned_cols=27 Identities=11% Similarity=0.149 Sum_probs=23.1
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.++..|..|||+.+|+|..+|...+..
T Consensus 33 ~~~~~s~~eLa~~l~vS~~Ti~rdi~~ 59 (187)
T 1j5y_A 33 SKEPVSGAQLAEELSVSRQVIVQDIAY 59 (187)
T ss_dssp CSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 344689999999999999999988764
No 138
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=40.45 E-value=75 Score=26.72 Aligned_cols=24 Identities=8% Similarity=0.241 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.+..|||+.+|++..+|..++..
T Consensus 55 ~~~~~eLa~~l~~~~~~vs~~l~~ 78 (149)
T 4hbl_A 55 PQTLNSIGRHLDLSSNTLTPMLKR 78 (149)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 679999999999999999988764
No 139
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=40.44 E-value=44 Score=28.53 Aligned_cols=25 Identities=12% Similarity=0.227 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+-|+..++|+.+|+|..+|++++..
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~ 61 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQE 61 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHH
Confidence 4579999999999999999999875
No 140
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=40.06 E-value=19 Score=32.69 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=27.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
+.|.+|||+.|+++..+|+..+...+.++...
T Consensus 164 g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 164 GLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 57999999999999999999988776665443
No 141
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=39.99 E-value=1e+02 Score=25.36 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|..++..
T Consensus 50 ~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 50 PKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCchhHHHHHHH
Confidence 689999999999999999988864
No 142
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=39.50 E-value=39 Score=28.59 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011324 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (488)
Q Consensus 405 rlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etV 448 (488)
+.+......-.-+..+...+.+.+-...|..+||+..|++.+++
T Consensus 2 ~m~k~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 45 (194)
T 2g7s_A 2 SMKNPQSKADDILQCARTLIIRGGYNSFSYADISQVVGIRNASI 45 (194)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHH
T ss_pred CCCchhhhHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHH
No 143
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=39.47 E-value=61 Score=27.15 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|..++..
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 579999999999999999998865
No 144
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=39.42 E-value=84 Score=26.38 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|..++..
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~ 80 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQ 80 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHH
Confidence 679999999999999999988864
No 145
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=39.40 E-value=85 Score=26.62 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 381 FSTYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.-.|....+.+.+.+.+.+......+.......+..| . ..+ +.+..|||+.+|++..+|..++..
T Consensus 23 ~l~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l-------~-~~~-~~t~~eLa~~l~~~~~tvs~~l~~ 87 (159)
T 3s2w_A 23 FIGKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRL-------Y-RED-GINQESLSDYLKIDKGTTARAIQK 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHH-------H-HSC-SEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------H-HCC-CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 4455666666666666665544444443333333332 1 123 679999999999999999988764
No 146
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=39.21 E-value=73 Score=26.66 Aligned_cols=24 Identities=21% Similarity=0.050 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.+..|||+.+|++..+|..++..
T Consensus 55 ~~t~~eLa~~l~~~~~tvs~~l~~ 78 (154)
T 2qww_A 55 GISVADLTKRLIITGSSAAANVDG 78 (154)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 579999999999999999988865
No 147
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=39.19 E-value=41 Score=29.30 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=20.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|+.|||+.+|+|..+|....+
T Consensus 75 G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 75 GYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999999977654
No 148
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=38.75 E-value=1e+02 Score=27.18 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..|.++||..+|++.++|-.++..-
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l 202 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRL 202 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4589999999999999999988753
No 149
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=38.63 E-value=33 Score=25.49 Aligned_cols=31 Identities=6% Similarity=-0.004 Sum_probs=24.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
+.|..|+|+.+|++..+|..+..- +...+++
T Consensus 21 glsq~~lA~~~gis~~~is~~e~g-~~~~~~~ 51 (73)
T 3omt_A 21 GKTNLWLTETLDKNKTTVSKWCTN-DVQPSLE 51 (73)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHTT-SSCCCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC-CCCCCHH
Confidence 579999999999999999988753 2334444
No 150
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=38.12 E-value=27 Score=29.79 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHh--CCCcccc
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFIT--RMPLSMQ 462 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a--r~~lSLD 462 (488)
..||..+||+.+|++..+|..++..- ...+...
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 35899999999999999999998752 4455553
No 151
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=38.03 E-value=1.3e+02 Score=24.70 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..+||+.+|++..+|..++..
T Consensus 50 ~~~~~~la~~l~i~~~~vs~~l~~ 73 (147)
T 2hr3_A 50 DVTPSELAAAERMRSSNLAALLRE 73 (147)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCChhhHHHHHHH
Confidence 689999999999999999988864
No 152
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=37.90 E-value=43 Score=28.62 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|...+..
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~ 40 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKK 40 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 579999999999999999998865
No 153
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=37.58 E-value=59 Score=30.56 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=20.1
Q ss_pred HHHHHHhhhCCCCcHHHHHHHhcCCHHHHH
Q 011324 291 EKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320 (488)
Q Consensus 291 ~~~~l~~~~Gr~Pt~~ewA~a~gm~eeeLi 320 (488)
+..-++..+..+++..++|+.+|++...|.
T Consensus 8 ~~~~i~~~~~~~~~~~~la~~~~~s~~~l~ 37 (292)
T 1d5y_A 8 LLIWLEGHLDQPLSLDNVAAKAGYSKWHLQ 37 (292)
T ss_dssp HHHHHHTTSSSSCCCHHHHTTTSSCHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCcCHHHHH
Confidence 334455566667788888888888766554
No 154
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=37.47 E-value=44 Score=27.54 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=20.7
Q ss_pred CcHHHHHHHhCCCHHHHHHHHH
Q 011324 432 PDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~ 453 (488)
++..+||+.+|+|..+|...+.
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 8999999999999999998875
No 155
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=37.44 E-value=43 Score=26.20 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=22.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.++..|||+.+|++..+|...+..
T Consensus 36 ~~t~~ela~~l~is~~tv~~~l~~ 59 (109)
T 2d1h_A 36 PITSEELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 689999999999999999998864
No 156
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=37.42 E-value=41 Score=27.30 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
|..++..|||+.+|++..+|...+..
T Consensus 31 g~~~s~~eLa~~lgvs~~tV~~~L~~ 56 (110)
T 1q1h_A 31 GTEMTDEEIANQLNIKVNDVRKKLNL 56 (110)
T ss_dssp CSCBCHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 43589999999999999999999875
No 157
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=37.30 E-value=44 Score=27.78 Aligned_cols=65 Identities=8% Similarity=0.068 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 381 FASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 381 FSTYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+..|..+.+.+.+...+.+......++......+..+ .. .+ ..+..|||+.+|++..+|..++..
T Consensus 13 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~~-~~-~~~~~~la~~l~~~~~tvs~~l~~ 77 (147)
T 1z91_A 13 QLSFLLYASSREMTKQYKPLLDKLNITYPQYLALLLL-------WE-HE-TLTVKKMGEQLYLDSGTLTPMLKR 77 (147)
T ss_dssp CHHHHHHHHHHHHHTTSHHHHTTTCCCHHHHHHHHHH-------HH-HS-EEEHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HH-CC-CCCHHHHHHHHCCCcCcHHHHHHH
Confidence 3445555555555555544433334443333332222 11 23 579999999999999999988764
No 158
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=37.30 E-value=54 Score=27.52 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=22.7
Q ss_pred hcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 427 EGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 427 elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+ ..+..|||+.+|+|..+|...+..
T Consensus 15 ~~~-~~~~~ela~~lg~s~~tv~~~l~~ 41 (141)
T 1i1g_A 15 KDA-RTPFTEIAKKLGISETAVRKRVKA 41 (141)
T ss_dssp HCT-TCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HcC-CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344 469999999999999999988764
No 159
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=37.27 E-value=58 Score=27.14 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..++..|||+.+|++..+|..++..
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~ 54 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSH 54 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHH
Confidence 3789999999999999999998864
No 160
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=37.20 E-value=76 Score=26.42 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|..++..
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 679999999999999999998875
No 161
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=37.18 E-value=60 Score=28.98 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=24.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh--CCCccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT--RMPLSM 461 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a--r~~lSL 461 (488)
..|.++||..+|++.++|-.++..- ...+..
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 4599999999999999999998753 234444
No 162
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=36.96 E-value=2e+02 Score=25.67 Aligned_cols=30 Identities=7% Similarity=-0.045 Sum_probs=24.5
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHhCC
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFITRM 457 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ar~ 457 (488)
.+...+.+||++..|+++.+|+...+....
T Consensus 162 ~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~ 191 (200)
T 1ais_B 162 EGEKRTQREVAEVARVTEVTVRNRYKELVE 191 (200)
T ss_dssp TTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455679999999999999999998765433
No 163
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=36.70 E-value=54 Score=25.57 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=17.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..++|+.+|++..+|..+..
T Consensus 21 gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 21 NVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 46788888888888888877765
No 164
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=36.69 E-value=57 Score=28.13 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=27.8
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 414 l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
..+|.++..+| .+.+-...|.++||+..||+.+++-..
T Consensus 14 r~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~ 52 (192)
T 2fq4_A 14 QKAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKW 52 (192)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHH
Confidence 34455555554 455556889999999999999999654
No 165
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=36.63 E-value=63 Score=28.00 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 412 TLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 412 e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
....+|-++...+..+.|-..|..+||+..|++.+++...
T Consensus 13 ~~r~~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~~ 52 (196)
T 2qwt_A 13 RNRARVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYRH 52 (196)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHH
No 166
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=36.43 E-value=70 Score=26.00 Aligned_cols=33 Identities=9% Similarity=0.255 Sum_probs=26.9
Q ss_pred HHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhC
Q 011324 424 YIQEGNHSPDKEDLARRVGITVEKLERLIFITR 456 (488)
Q Consensus 424 L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar 456 (488)
...+.|...+..+||+.+|++..+|..++..-+
T Consensus 27 ~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 27 VLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334456578999999999999999999987654
No 167
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=36.34 E-value=25 Score=28.24 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.0
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHH
Q 011324 432 PDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.|..+||..||++...|..+|..
T Consensus 30 ~Ta~~IAkkLg~sK~~vNr~LY~ 52 (75)
T 1sfu_A 30 TTAISLSNRLKINKKKINQQLYK 52 (75)
T ss_dssp ECHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCHHHHHHHHHH
Confidence 68999999999999999998864
No 168
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=36.00 E-value=48 Score=24.37 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=21.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..++|+.+|++..+|..+..
T Consensus 23 g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 23 QRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 58999999999999999988875
No 169
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=35.63 E-value=77 Score=26.74 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+-||..|||+.+|++..+|+.++..
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~~ 60 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQE 60 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4579999999999999999999874
No 170
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=35.51 E-value=46 Score=26.81 Aligned_cols=25 Identities=4% Similarity=0.053 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+.+..+||+.+|++..+|...+...
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999999998764
No 171
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=35.37 E-value=54 Score=26.57 Aligned_cols=23 Identities=4% Similarity=0.141 Sum_probs=19.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+++|+.+|++..+|..+..
T Consensus 22 glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 22 GLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57899999999999999888765
No 172
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=35.35 E-value=50 Score=27.09 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|..++..
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~ 73 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLAR 73 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHH
Confidence 579999999999999999988865
No 173
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=35.31 E-value=35 Score=25.82 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+|+|+.+|++..+|..+-.
T Consensus 24 gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 24 SLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp TCCHHHHHHHHCSCTTHHHHHHT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHc
Confidence 58999999999999999988765
No 174
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=35.19 E-value=74 Score=24.18 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=22.4
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 433 DKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
+..++|+.+||+..+|..+..--....+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~~~p~~~ 58 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRIATPAFF 58 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSSCBHH
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCCHH
Confidence 899999999999999988765322134544
No 175
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=35.11 E-value=49 Score=25.07 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhC
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITR 456 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar 456 (488)
+ |..++|+.+||+..+|..+..--+
T Consensus 12 g-sq~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 12 G-SVSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp S-SHHHHHHHHTCCHHHHHHHHHHTC
T ss_pred C-CHHHHHHHHCCCHHHHHHHHHCCC
Confidence 5 999999999999999999887543
No 176
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=35.04 E-value=69 Score=29.36 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 421 ~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
++.|..+. +.|.+|+|+.|||+..++..+-. ....++++
T Consensus 95 lk~lR~~~--glTQ~elA~~LGvsr~tis~yE~-G~r~iP~~ 133 (170)
T 2auw_A 95 FGDWMHRN--NLSLTTAAEALGISRRMVSYYRT-AHKIIPRT 133 (170)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTSCHHHHHHHHT-TSSCCCHH
T ss_pred HHHHHHHc--CCCHHHHHHHhCCCHHHHHHHHc-CCCCCCHH
Confidence 33444444 58999999999999999987765 33334444
No 177
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=34.90 E-value=45 Score=28.37 Aligned_cols=36 Identities=17% Similarity=0.443 Sum_probs=26.1
Q ss_pred HHHHHHH-HHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 416 KVLEAKR-LYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 416 kI~ka~~-~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
+|-++.. .+.+.+-...|.++||+..|++.+++-..
T Consensus 6 ~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~ 42 (179)
T 2eh3_A 6 RILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFH 42 (179)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHHH
Confidence 3444444 44555556889999999999999998543
No 178
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=34.90 E-value=45 Score=28.64 Aligned_cols=36 Identities=25% Similarity=0.498 Sum_probs=25.8
Q ss_pred HHHHHHH-HHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 416 KVLEAKR-LYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 416 kI~ka~~-~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
+|.++.. .+.+.+....|.++||+..||+.+++-..
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~ 43 (190)
T 3vpr_A 7 RILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHH 43 (190)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHH
Confidence 3334434 44555556789999999999999998554
No 179
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=34.80 E-value=73 Score=25.32 Aligned_cols=74 Identities=20% Similarity=0.225 Sum_probs=40.8
Q ss_pred ccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHHHHHHHHHHh
Q 011324 348 YQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427 (488)
Q Consensus 348 y~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRnaI~~~IRk~sr~irlP~~v~e~l~kI~ka~~~L~~e 427 (488)
|.......+||...-.+.--.--..|...-|..|..|+... ++..+...|..
T Consensus 15 ~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~~~~~~~---------------------------Rl~~A~~lL~~- 66 (103)
T 3lsg_A 15 YTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQK---------------------------RMEKAKLLLLT- 66 (103)
T ss_dssp TTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHH---------------------------HHHHHHHHHHH-
T ss_pred ccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH---------------------------HHHHHHHHHHC-
Confidence 33336778888777655554444445444455555555443 23333333332
Q ss_pred cCCCCcHHHHHHHhCC-CHHHHHHH
Q 011324 428 GNHSPDKEDLARRVGI-TVEKLERL 451 (488)
Q Consensus 428 lgr~pS~eEIAe~LGI-S~etVk~~ 451 (488)
. +.++.|||..+|. +.......
T Consensus 67 -~-~~si~~iA~~~Gf~~~s~F~r~ 89 (103)
T 3lsg_A 67 -T-ELKNYEIAEQVGFEDVNYFITK 89 (103)
T ss_dssp -C-CCCHHHHHHHTTCSCHHHHHHH
T ss_pred -C-CCCHHHHHHHhCCCCHHHHHHH
Confidence 1 4688899998887 44444433
No 180
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=34.41 E-value=29 Score=30.37 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.5
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH--hCCCccccc
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFI--TRMPLSMQQ 463 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~--ar~~lSLD~ 463 (488)
....||.++||+.+|+++.+|..++.. .+..+.+..
T Consensus 48 g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~ 85 (135)
T 2v79_A 48 GSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEE 85 (135)
T ss_dssp TCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 335799999999999999999999874 345666643
No 181
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=34.39 E-value=56 Score=27.39 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=21.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+|+|+.+|++..+|..+-.
T Consensus 84 glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 84 SLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp TCCHHHHHHHHCSCTTHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC
Confidence 58999999999999999988875
No 182
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=34.38 E-value=83 Score=26.80 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..+||+.+|++..+|...+..
T Consensus 54 ~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 54 EARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CcCHHHHHHHhCcCHHHHHHHHHH
Confidence 689999999999999999998875
No 183
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=34.17 E-value=56 Score=26.18 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=24.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
+.|..|+|+.+||+..+|..+..- +. ++++
T Consensus 37 glTq~eLA~~~GiS~~tis~iE~G-~~-~s~~ 66 (88)
T 3t76_A 37 DMKKGELREAVGVSKSTFAKLGKN-EN-VSLT 66 (88)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT-CC-CCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC-CC-cCHH
Confidence 689999999999999999887763 33 4554
No 184
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=34.12 E-value=87 Score=27.84 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=21.4
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 432 PDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
.|.++||..+|++.++|-.++..-
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L 187 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSL 187 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHH
Confidence 599999999999999999888643
No 185
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=33.94 E-value=88 Score=26.11 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=23.0
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+..++..|||+.+|++...|.+++..
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~ 49 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSP 49 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44679999999999999999999864
No 186
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=33.81 E-value=82 Score=25.87 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.+..|||+.+|++..+|..++..
T Consensus 41 ~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 41 PLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 689999999999999999998874
No 187
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=33.77 E-value=73 Score=27.00 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=26.0
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011324 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (488)
Q Consensus 415 ~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~ 450 (488)
.+|-++..++ .+.+-...|..+||+..|++.+++..
T Consensus 10 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 10 ERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHH
Confidence 3444444444 44555678999999999999999854
No 188
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=33.66 E-value=58 Score=27.89 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=26.2
Q ss_pred HHHHH-HHHHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 416 KVLEA-KRLYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 416 kI~ka-~~~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
+|-++ ...+.+.+-...|.++||+..|++.+++...
T Consensus 11 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 47 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYH 47 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHH
Confidence 34344 3444555556889999999999999998654
No 189
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=33.39 E-value=29 Score=28.68 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.|+..|||+.+|++..+|+..+..
T Consensus 43 lps~~eLa~~lgVSr~tVr~al~~ 66 (102)
T 2b0l_A 43 LLVASKIADRVGITRSVIVNALRK 66 (102)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 469999999999999999999875
No 190
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=33.29 E-value=1.4e+02 Score=26.05 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..|.++||..+|++.++|-.++..-
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l 187 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHAL 187 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3589999999999999999998753
No 191
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=33.23 E-value=92 Score=28.29 Aligned_cols=25 Identities=8% Similarity=0.197 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..|.++||..+|++.++|-.++..-
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L 201 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASL 201 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 4699999999999999999988753
No 192
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=33.12 E-value=62 Score=27.80 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 415 SKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 415 ~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+|-++...+..+.|-..|..+||+..||+.+++...
T Consensus 18 ~~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~~ 54 (194)
T 2q24_A 18 DKILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYRN 54 (194)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHHH
Confidence 4455555555444443499999999999999998654
No 193
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=32.94 E-value=1.3e+02 Score=28.01 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=34.4
Q ss_pred HHHHccCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHHH
Q 011324 344 VAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAI 397 (488)
Q Consensus 344 IAkry~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~wIRnaI~~~I 397 (488)
.+..........+|+.+...+.--.--..|.. -|..|..|+..+.-+...+.|
T Consensus 177 ~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~-~G~t~~~~l~~~Rl~~A~~lL 229 (276)
T 3gbg_A 177 LVKSDITRNWRWADICGELRTNRMILKKELES-RGVKFRELINSIRISYSISLM 229 (276)
T ss_dssp HHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHHHHCcCHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 33334445788999988877776666666753 677788777765444444444
No 194
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=32.87 E-value=57 Score=27.30 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=24.6
Q ss_pred cCCCCCHhHHHHHHHHHHHHhHHhhCCCCCCchhhHHHHH
Q 011324 349 QGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFASYAYWW 388 (488)
Q Consensus 349 ~~~g~d~EDLIQEG~IGL~rAiekFDpskG~rFSTYA~~w 388 (488)
.......+||..+..+.--.--..|...-|..|..|+..+
T Consensus 24 ~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~~~~l~~~ 63 (129)
T 1bl0_A 24 LESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSR 63 (129)
T ss_dssp TTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3445888888888666555444555444466666666554
No 195
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=32.83 E-value=28 Score=26.31 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=21.4
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHHhC
Q 011324 432 PDKEDLARRVGITVEKLERLIFITR 456 (488)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~ar 456 (488)
.+..|+|+.||||..++........
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 4789999999999999998876543
No 196
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=32.74 E-value=77 Score=26.18 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+++|+.+|++..+|..+..
T Consensus 25 glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHC
Confidence 58999999999999999988765
No 197
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=32.66 E-value=92 Score=26.39 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+-|+..+||+.+|+|..+|+.++..
T Consensus 34 ~lPse~~La~~~~vSr~tvr~Al~~ 58 (126)
T 3by6_A 34 QLPSVRETALQEKINPNTVAKAYKE 58 (126)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3479999999999999999999875
No 198
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=32.57 E-value=51 Score=28.18 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011324 413 LLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (488)
Q Consensus 413 ~l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~ 450 (488)
...+|-++...+ .+.+....|..+||+..|++.+++..
T Consensus 12 ~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 50 (203)
T 3b81_A 12 KRTELANKIWDIFIANGYENTTLAFIINKLGISKGALYH 50 (203)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHH
Confidence 344555554444 45555678999999999999999854
No 199
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=32.50 E-value=56 Score=27.01 Aligned_cols=65 Identities=5% Similarity=0.122 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHHH-HHhcCCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 381 FASYAYWWVRQTIRKAI-FQHSRTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 381 FSTYA~~wIRnaI~~~I-Rk~sr~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
...|....+.+.+.+.+ .+......++......+.. +. ..+ ..+..|||+.+|++..+|..++..
T Consensus 9 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~-------l~-~~~-~~~~~ela~~l~~~~~tvs~~l~~ 74 (142)
T 2bv6_A 9 QLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTI-------LW-DES-PVNVKKVVTELALDTGTVSPLLKR 74 (142)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTCCHHHHHHHHH-------HH-HSS-EEEHHHHHHHTTCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHH-------HH-HcC-CcCHHHHHHHHCCChhhHHHHHHH
Confidence 44566666666666666 4433222333322222222 21 233 579999999999999999988864
No 200
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=32.23 E-value=22 Score=32.37 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=24.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPL 459 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~l 459 (488)
+.+..+||..||++..+|+..+..+...+
T Consensus 213 g~~~~eia~~l~~s~~tv~~~l~~i~~kl 241 (258)
T 3p7n_A 213 GLRNKEVAARLGLSEKTVKMHRGLVMEKL 241 (258)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 57999999999999999999887665444
No 201
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=32.17 E-value=79 Score=26.50 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011324 407 PENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (488)
Q Consensus 407 P~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etV 448 (488)
+......-.-+..+...+.+.+-...|..+||+..|++.+++
T Consensus 4 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 45 (188)
T 3qkx_A 4 QAKTDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTI 45 (188)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchH
No 202
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=31.85 E-value=2.3e+02 Score=24.16 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.6
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.+...+..|||+.+|++..+|-.++..
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 343678899999999999999988764
No 203
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=31.72 E-value=75 Score=25.81 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=18.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+++|+.+|++..+|..+..
T Consensus 41 glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 41 GVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 47888888888888888877754
No 204
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=31.69 E-value=66 Score=25.50 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=19.9
Q ss_pred HHHhhhCCCCcHHHHHHHhcCCHHHH
Q 011324 294 KLQSQFGREPTLIEWAKAIGLSCRDL 319 (488)
Q Consensus 294 ~l~~~~Gr~Pt~~ewA~a~gm~eeeL 319 (488)
...+..|.+||..|.|+++|++...+
T Consensus 16 ~i~~~~g~~psv~EIa~~lgvS~~TV 41 (77)
T 2jt1_A 16 RQNMDDGAPVKTRDIADAAGLSIYQV 41 (77)
T ss_dssp HHHHHTTSCEEHHHHHHHHTCCHHHH
T ss_pred HHhhccCCCcCHHHHHHHHCCCHHHH
Confidence 33344589999999999999986543
No 205
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=31.65 E-value=90 Score=27.19 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..|.++||..+|++.++|-.++..-
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L 191 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKML 191 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHH
Confidence 3589999999999999999988753
No 206
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=31.64 E-value=95 Score=26.64 Aligned_cols=47 Identities=6% Similarity=0.080 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 405 rlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
+.+......-.-+..+...+.+.+....|..+||+..||+.+++...
T Consensus 8 ~~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~ 54 (212)
T 3knw_A 8 QVKKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHY 54 (212)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHH
No 207
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=31.25 E-value=55 Score=28.35 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=27.0
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 415 ~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+|-++... +.+.+-...|.++||+..|++.+++-..
T Consensus 13 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~y 50 (194)
T 2nx4_A 13 RSITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHY 50 (194)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHh
Confidence 344444444 4555556789999999999999998654
No 208
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.19 E-value=58 Score=24.94 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHh-----CCCHHHHHHHHHH
Q 011324 430 HSPDKEDLARRV-----GITVEKLERLIFI 454 (488)
Q Consensus 430 r~pS~eEIAe~L-----GIS~etVk~~L~~ 454 (488)
..++.+||++.+ +++..+|...|..
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~ 61 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQ 61 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHH
Confidence 378999999999 9999999998864
No 209
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=31.12 E-value=22 Score=27.42 Aligned_cols=23 Identities=13% Similarity=0.352 Sum_probs=20.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
.+|..+||+.+|++..+|-.+++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 47999999999999999988775
No 210
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=31.06 E-value=54 Score=28.55 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etV 448 (488)
+..+...+.+.+-...|.++||+..||+.+++
T Consensus 20 l~aA~~lf~~~G~~~~s~~~IA~~agvs~~tl 51 (204)
T 2ibd_A 20 LDIAATLFAERGLRATTVRDIADAAGILSGSL 51 (204)
T ss_dssp HHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCchhcCHHHHHHHhCCCchhH
No 211
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=30.54 E-value=56 Score=28.48 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=26.9
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 415 ~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+|-++... +.+.+-...|..+||+..||+.+++-..
T Consensus 13 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~ 50 (210)
T 3vib_A 13 EHLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWH 50 (210)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHH
Confidence 344444444 4555556889999999999999998653
No 212
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=30.45 E-value=81 Score=27.93 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=20.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+++|+.+|++..+|..+..
T Consensus 24 gltq~~lA~~~gis~~~is~~e~ 46 (192)
T 1y9q_A 24 GLSLDATAQLTGVSKAMLGQIER 46 (192)
T ss_dssp TCCHHHHHHHHSSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 58999999999999999988764
No 213
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=30.43 E-value=56 Score=28.44 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=26.8
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011324 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (488)
Q Consensus 414 l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~ 450 (488)
..+|-++...+ .+.+-...|..+||+..|++.+++-.
T Consensus 14 r~~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~ 51 (205)
T 1rkt_A 14 QAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYL 51 (205)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhhh
Confidence 34455554444 45555688999999999999999854
No 214
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=30.36 E-value=73 Score=26.98 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 412 TLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 412 e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
....+|.++..++..+. ...|..+||+..|++.+++...
T Consensus 14 ~~r~~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t~Y~~ 52 (190)
T 2v57_A 14 RTRRAILDAAMLVLADH-PTAALGDIAAAAGVGRSTVHRY 52 (190)
T ss_dssp HHHHHHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHH
No 215
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=30.30 E-value=41 Score=26.43 Aligned_cols=26 Identities=23% Similarity=0.265 Sum_probs=22.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhC
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITR 456 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar 456 (488)
..+.+|||+.+|++.+.|+.++.+.+
T Consensus 48 ~~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 48 SKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 46899999999999999999987653
No 216
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=30.22 E-value=1e+02 Score=26.23 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+-|+..+||+.+|+|..+|++++..-
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L 52 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLL 52 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45699999999999999999998753
No 217
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=30.20 E-value=57 Score=28.42 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=26.1
Q ss_pred HHHHHHH-HHHHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011324 415 SKVLEAK-RLYIQEGNHSPDKEDLARRVGITVEKLER 450 (488)
Q Consensus 415 ~kI~ka~-~~L~~elgr~pS~eEIAe~LGIS~etVk~ 450 (488)
.+|-++. ..+.+.+....|.++||+..|++.+++-.
T Consensus 12 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~ 48 (203)
T 3cdl_A 12 ESIVQAAIAEFGDRGFEITSMDRIAARAEVSKRTVYN 48 (203)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHH
Confidence 3344444 44455555688999999999999999854
No 218
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=30.06 E-value=97 Score=26.63 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcC-CCCcHHHHHHHhCCCHHHHHHH
Q 011324 414 LSKVLEAKRLYIQEGN-HSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 414 l~kI~ka~~~L~~elg-r~pS~eEIAe~LGIS~etVk~~ 451 (488)
..+|.++...+..+.| ...|..+||+..||+.+++...
T Consensus 33 r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~ 71 (218)
T 3dcf_A 33 RTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYY 71 (218)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHH
Confidence 4455555555554444 5789999999999999998654
No 219
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=30.04 E-value=75 Score=26.63 Aligned_cols=24 Identities=8% Similarity=0.176 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.+..|||+.+|++..+|..++..
T Consensus 51 ~~t~~eLa~~l~~~~~~vs~~l~~ 74 (151)
T 3kp7_A 51 ALTVGQITEKQGVNKAAVSRRVKK 74 (151)
T ss_dssp CBCHHHHHHHHCSCSSHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999999999999999988764
No 220
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=29.97 E-value=52 Score=28.85 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=26.8
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 415 ~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+|-++...+ .+.+-...|..+||+..|++.+++-..
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~ 51 (210)
T 2wui_A 14 DGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGH 51 (210)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHH
Confidence 3444444444 445556789999999999999999654
No 221
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=29.96 E-value=1.6e+02 Score=26.04 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..|.++||..+|++.++|-.++..-
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l 204 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTF 204 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4699999999999999999888753
No 222
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=29.94 E-value=90 Score=27.01 Aligned_cols=44 Identities=23% Similarity=0.161 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011324 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (488)
Q Consensus 405 rlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etV 448 (488)
+-+......-.-+..+...+.+.+....|.++||+..|++.+++
T Consensus 5 ~~~~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~ 48 (212)
T 2ras_A 5 SGTEHDAMRARLVDVAQAIVEERGGAGLTLSELAARAGISQANL 48 (212)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHH
No 223
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=29.87 E-value=70 Score=31.20 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCC
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRM 457 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~ 457 (488)
...+..|||+.||+|..+|+..|..++.
T Consensus 20 ~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999987643
No 224
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.83 E-value=59 Score=26.89 Aligned_cols=25 Identities=4% Similarity=0.097 Sum_probs=22.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+.+..+||+.+|++..+|...+...
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 4799999999999999999998754
No 225
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=29.72 E-value=1.1e+02 Score=26.45 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=34.3
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHhC
Q 011324 402 RTIRLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITR 456 (488)
Q Consensus 402 r~irlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ar 456 (488)
..+.+|......+..-+ ..+..++. +.++.|+|...|+|+.+|..++...+
T Consensus 67 ~~iYIPk~~~~~~~~Rn---~~I~~~f~-G~n~~eLArkYgLSer~I~~Ii~~~r 117 (129)
T 1rr7_A 67 GQVYIPRGQALDSLIRD---LRIWNDFN-GRNVSELTTRYGVTFNTVYKAIRRMR 117 (129)
T ss_dssp SCCCCCCSHHHHHHHHH---HHHHHHCC-SSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred eeEEeeCCchHHHHHHH---HHHHHHhC-CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35667765443322211 22334455 78999999999999999999997543
No 226
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=29.72 E-value=95 Score=26.82 Aligned_cols=41 Identities=10% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011324 408 ENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (488)
Q Consensus 408 ~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etV 448 (488)
......-.-+..+...+.+.+....|.++||+..||+.+++
T Consensus 6 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~ 46 (204)
T 3anp_C 6 QKKRRRERIFRAAMELFRNRGFQETTATEIAKAAHVSRGTF 46 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCchHHH
No 227
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=29.58 E-value=86 Score=27.26 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 412 TLLSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 412 e~l~kI~ka~~~L~-~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
+...+|.++...+. +.+....|..+||+..||+.+++...
T Consensus 23 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~ 63 (214)
T 2zb9_A 23 EVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKW 63 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 33445555555544 44445789999999999999998654
No 228
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=29.57 E-value=67 Score=27.65 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=26.6
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 414 l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
..+|.++...+ .+.+- ..|..+||+..||+.+++...
T Consensus 18 r~~Il~aA~~lf~~~G~-~~s~~~Ia~~agvs~~t~Y~~ 55 (199)
T 2rek_A 18 YDRIIEAAAAEVARHGA-DASLEEIARRAGVGSATLHRH 55 (199)
T ss_dssp HHHHHHHHHHHHHHHGG-GCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CCCHHHHHHHhCCchHHHHHH
Confidence 34455554444 44555 789999999999999998653
No 229
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=29.54 E-value=60 Score=28.33 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=26.7
Q ss_pred HHHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011324 414 LSKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLER 450 (488)
Q Consensus 414 l~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~ 450 (488)
..+|-++... +.+.+....|.++||+..|++.+++..
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~ 53 (199)
T 3crj_A 16 TEEIMQATYRALREHGYADLTIQRIADEYGKSTAAVHY 53 (199)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHhh
Confidence 3445454444 455555688999999999999999843
No 230
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=29.43 E-value=62 Score=27.44 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etV 448 (488)
+..+...+.+.+-...|.++||+..|++.+++
T Consensus 17 l~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~ 48 (196)
T 3he0_A 17 LAAAEQLIAESGFQGLSMQKLANEAGVAAGTI 48 (196)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHhCCCcchH
No 231
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=29.31 E-value=80 Score=27.08 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLI 452 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L 452 (488)
+..+...+.+.+-...|..+||+..|++.+++....
T Consensus 22 l~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 57 (213)
T 2qtq_A 22 LQTASNIMREGDVVDISLSELSLRSGLNSALVKYYF 57 (213)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhc
No 232
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=29.30 E-value=73 Score=26.80 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHh-cCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 415 SKVLEAKRLYIQE-GNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 415 ~kI~ka~~~L~~e-lgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+|.++...+..+ +-...|..+||+..|++.+++...
T Consensus 12 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~ 49 (195)
T 3ppb_A 12 QAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHH 49 (195)
T ss_dssp HHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHH
Confidence 3444555554444 446889999999999999998654
No 233
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=29.28 E-value=46 Score=28.17 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etV 448 (488)
+..+...+.+.+-...|..+||+..|++.+++
T Consensus 16 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~ 47 (196)
T 3col_A 16 QDAVAAIILAEGPAGVSTTKVAKRVGIAQSNV 47 (196)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHhCCcHHHH
No 234
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.26 E-value=57 Score=29.35 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011324 414 LSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLER 450 (488)
Q Consensus 414 l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~ 450 (488)
..+|-++..++..+.| ..|..+||+.+|++..++..
T Consensus 13 r~~Il~aA~~l~~~~G-~~s~~~IA~~aGvs~~tlY~ 48 (213)
T 2g7g_A 13 RERIAEAALELVDRDG-DFRMPDLARHLNVQVSSIYH 48 (213)
T ss_dssp HHHHHHHHHHHHHHHS-SCCHHHHHHHTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHcC-CCCHHHHHHHhCCCHhHHHH
Confidence 3455566666666677 99999999999999999854
No 235
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=29.24 E-value=63 Score=25.71 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=19.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.|..++|+.+|++..+|..+..-
T Consensus 14 gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 14 GYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 578999999999999988877653
No 236
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=29.22 E-value=84 Score=27.83 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=20.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.|.+|+|+.+|++..+|..+..-
T Consensus 23 g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 23 KMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 589999999999999999887653
No 237
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=29.21 E-value=55 Score=25.80 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+.+..+||..+||+..+|..++...
T Consensus 38 g~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 38 GESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3689999999999999999887643
No 238
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=29.12 E-value=82 Score=26.37 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.5
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHH
Q 011324 432 PDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.|..|||+.+|++..+|...+..
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~ 65 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKK 65 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHH
Confidence 79999999999999999999875
No 239
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=29.11 E-value=61 Score=30.96 Aligned_cols=29 Identities=10% Similarity=0.135 Sum_probs=26.5
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHhC
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFITR 456 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ar 456 (488)
.|+.|+..++|..+|++.++|+.+|....
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 67799999999999999999999998664
No 240
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=29.08 E-value=1.2e+02 Score=26.75 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..|.++||..+|++.++|-.++..-
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l 201 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADF 201 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 4699999999999999999888753
No 241
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=29.05 E-value=79 Score=27.61 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=26.8
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 415 ~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+|-++..+ +.+.+-...|..+||+..|++.+++-..
T Consensus 11 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~ 48 (202)
T 2d6y_A 11 ARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAY 48 (202)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHH
Confidence 344444444 4555556889999999999999998654
No 242
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=28.95 E-value=74 Score=27.03 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=13.5
Q ss_pred CCcHHHHHHHhCCCHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLI 452 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L 452 (488)
+.|.+|+|+.+|++...+..+-
T Consensus 16 gltq~elA~~~gis~~~is~iE 37 (130)
T 3fym_A 16 GMTLTELEQRTGIKREMLVHIE 37 (130)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHH
Confidence 4566666666666666665543
No 243
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=28.87 E-value=2e+02 Score=23.25 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|...+..
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~ 68 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKL 68 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 589999999999999999988865
No 244
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=28.51 E-value=59 Score=27.72 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etV 448 (488)
+..+...+.+.+-...|..+||+..|++.+++
T Consensus 23 l~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~ 54 (206)
T 3kz9_A 23 MEIALEVFARRGIGRGGHADIAEIAQVSVATV 54 (206)
T ss_dssp HHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCcccccHHHHHHHhCCCHHHH
No 245
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=28.45 E-value=69 Score=25.45 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+|+|+.+||+..+|..+..
T Consensus 43 glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 43 KLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHhCcCHHHHHHHHc
Confidence 58999999999999999988765
No 246
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=28.45 E-value=3.7e+02 Score=25.38 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=24.7
Q ss_pred HHHhcCCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 424 YIQEGNHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 424 L~~elgr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+.......|...||++.+|++...++.++...
T Consensus 150 ~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l 181 (258)
T 1lva_A 150 YRVSRWQPPSFKEVAGSFNLDPSELEELLHYL 181 (258)
T ss_dssp HHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHH
Confidence 33344446799999999999999998887643
No 247
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=28.38 E-value=1e+02 Score=26.31 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 412 TLLSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 412 e~l~kI~ka~~~L~-~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
....+|.++...+. +.+-...|..+||+..|++.+++...
T Consensus 12 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 52 (202)
T 3lwj_A 12 ERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNY 52 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHH
Confidence 34445555555544 44446789999999999999998654
No 248
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=28.35 E-value=12 Score=29.40 Aligned_cols=50 Identities=14% Similarity=-0.030 Sum_probs=31.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHhCCCccccccCCCCCCCccccccCCCC
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQVMPLLLS 481 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD~~i~~d~~~tl~e~i~D~s 481 (488)
++.|..+||+.+|++..+|..++.. ...++...|.+--+.++.+++++.-
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~~--~~p~~~~~IA~aLgv~~~~L~~~ry 70 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALER--HWPKGEQIIANALETKPEVIWPSRY 70 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTTS--SCHHHHHHHHHHTTSCHHHHCTTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC--CCccHHHHHHHHHCcCHHHHhHHhc
Confidence 4689999999999999999977542 1222222232222445555555543
No 249
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.28 E-value=66 Score=28.12 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 419 EAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 419 ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+...+.+.+-...|.++||+..||+..++-..
T Consensus 19 aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~ 51 (202)
T 2i10_A 19 TAMELFWRQGYEGTSITDLTKALGINPPSLYAA 51 (202)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHhCcccCCHHHHHHHhCCChHHHHHH
Confidence 344445555556789999999999999999654
No 250
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.22 E-value=81 Score=27.55 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLI 452 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L 452 (488)
+..+...+.+.+ ...|.++||+..|++.+++....
T Consensus 26 l~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F 60 (215)
T 2hku_A 26 FTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYY 60 (215)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHc
No 251
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=27.99 E-value=94 Score=24.07 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|...+..
T Consensus 34 ~~s~~ela~~l~is~~tv~~~l~~ 57 (109)
T 1sfx_A 34 GMRVSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 589999999999999999999875
No 252
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=27.99 E-value=79 Score=27.34 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
+..+...+...+-...|..+||+..|++.+++...
T Consensus 17 l~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 51 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYY 51 (216)
T ss_dssp HHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHHH
No 253
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=27.91 E-value=81 Score=26.79 Aligned_cols=38 Identities=18% Similarity=0.220 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHh-cCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 414 LSKVLEAKRLYIQE-GNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 414 l~kI~ka~~~L~~e-lgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
..+|.++..++..+ +-...|..+||+..|++.+++...
T Consensus 16 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 54 (203)
T 3f1b_A 16 EQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLY 54 (203)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHH
Confidence 34455555555444 446889999999999999998654
No 254
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=27.82 E-value=79 Score=24.67 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=19.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..++|+.+|++..+|..+..
T Consensus 17 gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 17 YLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 58999999999999999987643
No 255
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=27.74 E-value=81 Score=27.11 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=26.9
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 415 ~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+|.++... +.+.+-...|..+||+..|++.+++...
T Consensus 20 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (207)
T 2rae_A 20 DRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRY 57 (207)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhh
Confidence 344444444 4455556789999999999999998755
No 256
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=27.72 E-value=61 Score=27.51 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=26.8
Q ss_pred HHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 415 SKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 415 ~kI~ka~~~L~-~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+|.++...+. +.+-...|..+||+..|++.+++...
T Consensus 11 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (206)
T 3dew_A 11 SRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYH 48 (206)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHH
Confidence 34555545544 44445889999999999999999654
No 257
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=27.66 E-value=74 Score=25.33 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=19.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|..++|+.+|++..+|..+..
T Consensus 31 gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 31 DINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57889999999999988887765
No 258
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=27.56 E-value=66 Score=26.91 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=15.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.+..|||+.+|++..+|..++..
T Consensus 57 ~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 57 GIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp CCCHHHHHHC------CHHHHHHH
T ss_pred CCCHHHHHHHHCCChhHHHHHHHH
Confidence 689999999999999999888764
No 259
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=27.53 E-value=2.2e+02 Score=24.15 Aligned_cols=73 Identities=15% Similarity=0.014 Sum_probs=45.6
Q ss_pred hhC-CCCcHHHHHHHhcCCHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhH
Q 011324 298 QFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370 (488)
Q Consensus 298 ~~G-r~Pt~~ewA~a~gm~eeeLi~~l~~Gd~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAi 370 (488)
..| ...|..+.|+++|++...+..-...-++-+..++..+...+..........+.+..+.+...+..++..+
T Consensus 40 ~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (212)
T 3nxc_A 40 SDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFG 113 (212)
T ss_dssp ------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred cCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 335 4579999999999998888877766666667777666655555554443444466666555555554443
No 260
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=27.46 E-value=1.7e+02 Score=24.89 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.2
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..|..|||+.+|++..+|-.++..
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~ 75 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEV 75 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHH
Confidence 579999999999999999888764
No 261
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=27.31 E-value=71 Score=27.12 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=22.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+.+..+||+.+|++..+|...+...
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4799999999999999999998764
No 262
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=27.25 E-value=69 Score=28.11 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=25.9
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011324 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLER 450 (488)
Q Consensus 415 ~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~ 450 (488)
.+|-++... +.+.+-...|.++||+..|++.+++-.
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~ 50 (219)
T 2w53_A 14 EGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYW 50 (219)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHhh
Confidence 344444444 455555678999999999999999854
No 263
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=27.21 E-value=28 Score=29.06 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.5
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHH
Q 011324 432 PDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.+..|||+.+|++..+|..++..
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999999999999998864
No 264
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=27.05 E-value=92 Score=27.11 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..|.++||..+|++.++|-.++..-
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L 163 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADL 163 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3589999999999999999888753
No 265
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=27.04 E-value=1.4e+02 Score=24.55 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=18.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.+..|||+.+|++..+|..++..
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~ 74 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRE 74 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHH
Confidence 689999999999999999888764
No 266
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=26.96 E-value=40 Score=30.42 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
-.|..|+|+.|||+..+|+.+++-.
T Consensus 31 ~LTv~EVAe~LgVs~srV~~LIr~G 55 (148)
T 2kfs_A 31 TYDLPRVAELLGVPVSKVAQQLREG 55 (148)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHTT
T ss_pred eEcHHHHHHHhCCCHHHHHHHHHCC
Confidence 4589999999999999999998743
No 267
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=26.77 E-value=1.5e+02 Score=25.01 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 405 rlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
+-...-...-.-+..+...+.+.+-...|..+||+..|++.+++...
T Consensus 2 ~~~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~ 48 (194)
T 3dpj_A 2 NAMVQAQTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYH 48 (194)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHH
No 268
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=26.65 E-value=69 Score=26.32 Aligned_cols=31 Identities=10% Similarity=0.264 Sum_probs=24.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCcccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPLSMQ 462 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSLD 462 (488)
+.|..|+|+.+||+..+|..+.. .+..+|++
T Consensus 27 gltq~eLA~~lGis~~~is~ie~-G~~~~s~~ 57 (104)
T 3trb_A 27 KMSANQLAKHLAIPTNRVTAILN-GARSITAD 57 (104)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHT-TSSCCCHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc-CCCCCCHH
Confidence 68999999999999999998875 33445554
No 269
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=26.62 E-value=79 Score=27.45 Aligned_cols=35 Identities=6% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
+..+...+.+.+-...|..+||+..|++.+++...
T Consensus 36 l~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~ 70 (222)
T 3bru_A 36 IRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHY 70 (222)
T ss_dssp HHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhh
No 270
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.36 E-value=87 Score=27.25 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=26.0
Q ss_pred HHHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHH
Q 011324 414 LSKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLE 449 (488)
Q Consensus 414 l~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk 449 (488)
..+|-++... +.+.+-...|.++||+..|++.+++.
T Consensus 14 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY 50 (200)
T 2hyj_A 14 RGRILGRAAEIASEEGLDGITIGRLAEELEMSKSGVH 50 (200)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHH
Confidence 3444444444 45555567899999999999999984
No 271
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=26.15 E-value=99 Score=26.27 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 412 TLLSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 412 e~l~kI~ka~~~L~-~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
....+|-++...+. +.+-...|.++||+..|++.+++...
T Consensus 17 ~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 57 (208)
T 3cwr_A 17 VVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRF 57 (208)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHH
Confidence 34445555555544 44445789999999999999998654
No 272
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=26.14 E-value=1.2e+02 Score=23.70 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=21.3
Q ss_pred CCcHHHHHHHhCCCHHH-HHHHHHH
Q 011324 431 SPDKEDLARRVGITVEK-LERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~et-Vk~~L~~ 454 (488)
.++..|||+.+|++..+ |..++..
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~ 54 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDR 54 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHH
Confidence 68999999999999999 8777654
No 273
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=26.08 E-value=1.9e+02 Score=23.82 Aligned_cols=24 Identities=4% Similarity=0.133 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.+..|||+.+|++..+|..++..
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 589999999999999999988764
No 274
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=26.07 E-value=73 Score=28.39 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=24.5
Q ss_pred HHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHH
Q 011324 417 VLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLE 449 (488)
Q Consensus 417 I~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk 449 (488)
|.++... +.+.+-...|.++||+..||+.+++.
T Consensus 35 Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y 68 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIY 68 (230)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHT
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHCCChhHHH
Confidence 4444444 45555567899999999999999984
No 275
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=26.07 E-value=1.1e+02 Score=27.61 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHhC--CCHHHHHHHHHH
Q 011324 416 KVLEAKRLYIQEGNHSPDKEDLARRVG--ITVEKLERLIFI 454 (488)
Q Consensus 416 kI~ka~~~L~~elgr~pS~eEIAe~LG--IS~etVk~~L~~ 454 (488)
.+...+..+.---+...+.++||+.+| ++...|+.++..
T Consensus 7 ~~~~~iEAlLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~ 47 (162)
T 1t6s_A 7 QLLRSLEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDE 47 (162)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHH
Confidence 333344443333466789999999999 999999988753
No 276
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=25.97 E-value=73 Score=30.12 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=23.7
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.+-|+..|||+.+|+|..+|++++..
T Consensus 33 g~~lPse~~La~~~~vSr~tvr~Al~~ 59 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVRQALRE 59 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 445689999999999999999999874
No 277
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=25.89 E-value=65 Score=26.99 Aligned_cols=38 Identities=11% Similarity=0.048 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhcC-CCCcHHHHHHHhCCCHHHHHH
Q 011324 413 LLSKVLEAKRLYIQEGN-HSPDKEDLARRVGITVEKLER 450 (488)
Q Consensus 413 ~l~kI~ka~~~L~~elg-r~pS~eEIAe~LGIS~etVk~ 450 (488)
...+|.++...|..+.| ...|..+||+..||+.+++-.
T Consensus 13 tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~ 51 (177)
T 3kkc_A 13 TKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYS 51 (177)
T ss_dssp HHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTT
T ss_pred HHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHH
Confidence 34455555555554444 578999999999999999743
No 278
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=25.82 E-value=37 Score=29.41 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHh-cCCCCcHHHHHHHhCCCHHHHH
Q 011324 415 SKVLEAKRLYIQE-GNHSPDKEDLARRVGITVEKLE 449 (488)
Q Consensus 415 ~kI~ka~~~L~~e-lgr~pS~eEIAe~LGIS~etVk 449 (488)
.+|.++...+..+ +-...|..+||+..||+.+++-
T Consensus 16 ~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 51 (195)
T 2iu5_A 16 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHH
Confidence 4454555555444 4456899999999999988874
No 279
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=25.68 E-value=22 Score=28.78 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
+-|+..|||+.+|+|..+|+..+..-
T Consensus 34 ~lps~~eLa~~~~vSr~tvr~al~~L 59 (102)
T 1v4r_A 34 TLPSVADIRAQFGVAAKTVSRALAVL 59 (102)
T ss_dssp BCCCHHHHHHHSSSCTTHHHHHTTTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34699999999999999999998753
No 280
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=25.57 E-value=1.2e+02 Score=25.95 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
...+..|||+.+|++..+|-.++..
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~ 85 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDR 85 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHH
Confidence 4689999999999999999888764
No 281
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=25.54 E-value=1.1e+02 Score=27.11 Aligned_cols=44 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011324 405 RLPENIYTLLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (488)
Q Consensus 405 rlP~~v~e~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etV 448 (488)
+-+......-.-+..+...+.+.+-...|..+||+..||+.+++
T Consensus 37 ~~~r~~~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~ 80 (229)
T 3bni_A 37 VQRRSAERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSV 80 (229)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhH
No 282
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=25.47 E-value=50 Score=27.86 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=25.3
Q ss_pred HHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 416 KVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 416 kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
+|.++... +.+.+-...|..+||+..|++.+++...
T Consensus 10 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 46 (191)
T 1sgm_A 10 KILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHF 46 (191)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHS
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHH
Confidence 34444444 4455556789999999999998887543
No 283
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=25.44 E-value=55 Score=28.52 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 413 LLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 413 ~l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
...+|-++...+ .+.+-...|.++||+..|++.+++-..
T Consensus 12 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~ 51 (210)
T 2xdn_A 12 TRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWH 51 (210)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHH
Confidence 344555555554 445556789999999999999998654
No 284
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=25.33 E-value=59 Score=27.48 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=24.9
Q ss_pred HHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011324 416 KVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (488)
Q Consensus 416 kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~ 450 (488)
+|.++..++ .+.+-...|..+||+..|++.+++..
T Consensus 12 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 12 KIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHH
Confidence 444444444 44444578999999999999999843
No 285
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=25.32 E-value=1.4e+02 Score=26.90 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCH-HHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITV-EKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~-etVk~~L~~a 455 (488)
..|.++||..+|++. ++|-.++..-
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l 194 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKL 194 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHH
Confidence 579999999999999 7998888753
No 286
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=25.29 E-value=85 Score=25.77 Aligned_cols=23 Identities=4% Similarity=0.150 Sum_probs=20.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.|.+|+|+.+||+..+|..+..
T Consensus 36 gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 36 GLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHC
Confidence 58999999999999999988765
No 287
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=25.28 E-value=92 Score=28.62 Aligned_cols=28 Identities=7% Similarity=0.078 Sum_probs=22.4
Q ss_pred HHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011324 425 IQEGNHSPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 425 ~~elgr~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
..+.+ ..+.+|||+.+|+|+.+|+.-+.
T Consensus 21 l~~~~-~~~~~~la~~~~vs~~TiRrDl~ 48 (190)
T 4a0z_A 21 IDSNP-FITDHELSDLFQVSIQTIRLDRT 48 (190)
T ss_dssp HHHCT-TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHCC-CEeHHHHHHHHCCCHHHHHHHHH
Confidence 33444 68999999999999999987543
No 288
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=25.21 E-value=2.9e+02 Score=22.87 Aligned_cols=74 Identities=11% Similarity=0.017 Sum_probs=56.1
Q ss_pred hhC-CCCcHHHHHHHhcCCHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHH
Q 011324 298 QFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVE 371 (488)
Q Consensus 298 ~~G-r~Pt~~ewA~a~gm~eeeLi~~l~~Gd~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAie 371 (488)
..| ...|..+.|+.+|++...+..-...-++-+..++..+...+............+..+.+...+..++..+.
T Consensus 24 ~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 98 (195)
T 3ppb_A 24 SQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTWAM 98 (195)
T ss_dssp HTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred hcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhh
Confidence 446 45799999999999999998888776788888888887777777766666666777777766666655443
No 289
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=25.12 E-value=1.4e+02 Score=25.66 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHh-cCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 413 LLSKVLEAKRLYIQE-GNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 413 ~l~kI~ka~~~L~~e-lgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
...+|.++...+..+ +-...|..+||+..|++.+++...
T Consensus 9 ~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~ 48 (199)
T 2o7t_A 9 RREHIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRN 48 (199)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHH
Confidence 344555555555444 445679999999999999998654
No 290
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=24.88 E-value=70 Score=26.92 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 414 LSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 414 l~kI~ka~~~L~-~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
..+|-++...+. +.+-...|..+||+..|++.+++...
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 48 (195)
T 3pas_A 10 RIAFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIY 48 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHHH
Confidence 344545544444 44435789999999999999998654
No 291
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=24.86 E-value=62 Score=25.62 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.3
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCC
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRM 457 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~ 457 (488)
+.++.+||..+||+..+|..++.....
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 469999999999999999999876543
No 292
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.70 E-value=61 Score=28.30 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=26.4
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 415 ~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+|-++..+ +.+.+....|.++||+..|++.+++...
T Consensus 12 ~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~ 49 (203)
T 2np5_A 12 ERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHH 49 (203)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHHH
Confidence 344444444 4445545789999999999999998654
No 293
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=24.66 E-value=1.5e+02 Score=24.49 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=20.5
Q ss_pred cHHHHHHHhCCCHHHHHHHHHH
Q 011324 433 DKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~ 454 (488)
+..|||+.+|++..+|..++..
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~ 73 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDK 73 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHH
Confidence 9999999999999999988764
No 294
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=24.62 E-value=65 Score=27.03 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=22.5
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
....++++||+.+|++...+..+.+..
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 447899999999999999888877643
No 295
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=24.46 E-value=59 Score=24.42 Aligned_cols=25 Identities=12% Similarity=-0.085 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
-.+..|+|+.||++..++...+...
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 4589999999999999999988765
No 296
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=24.43 E-value=96 Score=24.39 Aligned_cols=23 Identities=17% Similarity=0.180 Sum_probs=19.6
Q ss_pred CCcHHHHHHHhCCCHHH----HHHHHH
Q 011324 431 SPDKEDLARRVGITVEK----LERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~et----Vk~~L~ 453 (488)
+.|.+|+|+.+|++..+ |..+..
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 58999999999999999 766654
No 297
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=24.42 E-value=94 Score=23.99 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..+..|||+.+|++..+|...+..-
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L 62 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARM 62 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999999888653
No 298
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=24.38 E-value=94 Score=26.65 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=26.1
Q ss_pred HHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 416 KVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 416 kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
+|.++...+ .+.+....|.++||+..|++..++...
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 44 (185)
T 2yve_A 8 MILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYH 44 (185)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHh
Confidence 344444444 444556789999999999999998654
No 299
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=24.31 E-value=3.5e+02 Score=23.75 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=21.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.+..+||+.||++..+|..++.
T Consensus 158 G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 158 GLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHh
Confidence 57999999999999999998875
No 300
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=24.16 E-value=1.1e+02 Score=28.54 Aligned_cols=34 Identities=9% Similarity=-0.041 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011324 420 AKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 420 a~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+...+...+....+.+++|+.+|++...+..+.+
T Consensus 174 ~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 174 ISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3344455566678999999999999999988875
No 301
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=24.16 E-value=1.5e+02 Score=27.17 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..|.++||..+|++.++|-.++..-
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L 241 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKML 241 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3589999999999999999988753
No 302
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=24.10 E-value=88 Score=26.95 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
+..+...+.+.+....|..+||+..|++.+++...
T Consensus 16 l~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~ 50 (216)
T 3s5r_A 16 LDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYY 50 (216)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHH
No 303
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=23.98 E-value=1.4e+02 Score=25.80 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHhCCCHHHHHHH
Q 011324 410 IYTLLSKVLEAKRLYIQEGN-HSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 410 v~e~l~kI~ka~~~L~~elg-r~pS~eEIAe~LGIS~etVk~~ 451 (488)
-.+...+|.++...+..+.| ...|..+||+..|++.+++...
T Consensus 15 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 57 (218)
T 3gzi_A 15 DTQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYY 57 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHH
Confidence 33455566666666655544 5789999999999999998665
No 304
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=23.97 E-value=73 Score=27.66 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 430 HSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..++.+|||+.+|++...|++++..
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~ 53 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSY 53 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3579999999999999999999864
No 305
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=23.89 E-value=3.1e+02 Score=22.70 Aligned_cols=71 Identities=20% Similarity=0.062 Sum_probs=50.1
Q ss_pred CCcHHHHHHHhcCCHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHh
Q 011324 302 EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372 (488)
Q Consensus 302 ~Pt~~ewA~a~gm~eeeLi~~l~~Gd~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiek 372 (488)
..|..+.|+++|++...+..-...-++-+..++..+..-+..........+.+..+.+...+..+++.+..
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 98 (195)
T 3pas_A 28 ATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRIGLE 98 (195)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999888887777777777777766665555444445666666666665555555443
No 306
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=23.56 E-value=96 Score=25.22 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHhCCCHHHHHHHHH
Q 011324 430 HSPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 430 r~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
++.|.+++|+.+|++..+|..+..
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 368999999999999999987754
No 307
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=23.55 E-value=2.3e+02 Score=24.26 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|..++..
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~ 82 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDR 82 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Confidence 689999999999999999988865
No 308
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=23.53 E-value=37 Score=32.65 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=21.5
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHH
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
.+.+|.++||+..|+|..+|..+|+
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln 32 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLR 32 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4578999999999999999998885
No 309
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=23.38 E-value=1e+02 Score=24.98 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=23.8
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
...+.+..|||+.+|++..+|..++..
T Consensus 33 g~~gi~qkeLa~~~~l~~~tvt~iLk~ 59 (91)
T 2dk5_A 33 GNKGIWSRDVRYKSNLPLTEINKILKN 59 (91)
T ss_dssp CTTCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 445799999999999999999999875
No 310
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=23.37 E-value=1.6e+02 Score=26.55 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.1
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..|.++||..+|++.++|-.++..-
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L 217 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDL 217 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHH
Confidence 4599999999999999999998753
No 311
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=23.26 E-value=49 Score=32.04 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=22.5
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHH
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
.+.+|+++||+..|+|..+|..+|+
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHC
Confidence 4578999999999999999998886
No 312
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=23.24 E-value=1.2e+02 Score=28.18 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHh-cCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 413 LLSKVLEAKRLYIQE-GNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 413 ~l~kI~ka~~~L~~e-lgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
...+|.++..++..+ +....|..+||+..||+.+++...
T Consensus 42 tr~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~tlY~h 81 (273)
T 3c07_A 42 TRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYY 81 (273)
T ss_dssp HHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHHHHHH
Confidence 344555555555444 445789999999999999998653
No 313
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=23.22 E-value=97 Score=24.17 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.9
Q ss_pred cHHHHHHHhCCCHHHHHHHHHH
Q 011324 433 DKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.++||+.|||+..+|...+..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5899999999999999999764
No 314
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=23.16 E-value=62 Score=27.77 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHh-cCCCCcHHHHHHHhCCCHHHHHHHH
Q 011324 415 SKVLEAKRLYIQE-GNHSPDKEDLARRVGITVEKLERLI 452 (488)
Q Consensus 415 ~kI~ka~~~L~~e-lgr~pS~eEIAe~LGIS~etVk~~L 452 (488)
.+|-++...+..+ +....|.++||+..|++.+++....
T Consensus 10 ~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 48 (195)
T 2dg7_A 10 QRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYF 48 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHc
Confidence 3444454454444 4456899999999999999987553
No 315
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=23.12 E-value=1.5e+02 Score=25.36 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 410 IYTLLSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 410 v~e~l~kI~ka~~~L~-~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
......+|.++...+. +.+....|..+||+..|++.+++...
T Consensus 24 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 66 (217)
T 3mvp_A 24 SIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAY 66 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHH
Confidence 3344555655555554 44446889999999999999998654
No 316
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=22.96 E-value=51 Score=28.60 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKL 448 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etV 448 (488)
+..+...+.+.+-...|.++||+..||+.+++
T Consensus 20 l~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~ 51 (203)
T 3ccy_A 20 IERAAAMFARQGYSETSIGDIARACECSKSRL 51 (203)
T ss_dssp HHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCCcCee
No 317
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=22.84 E-value=80 Score=28.80 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 413 ~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.+-..++.+-++.. .| ..+.-+||+.||+|-+.+..++..
T Consensus 8 ~v~erk~~ILE~Lk-~G-~~~t~~Iak~LGlShg~aq~~Ly~ 47 (165)
T 2vxz_A 8 EVLVRLRDILALLA-DG-CKTTSLIQQRLGLSHGRAKALIYV 47 (165)
T ss_dssp HHHHHHHHHHHHHT-TC-CEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hC-CccHHHHHHHhCCcHHHHHHHHHH
Confidence 33333444444444 55 678999999999999999998863
No 318
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=22.59 E-value=91 Score=28.17 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 413 LLSKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 413 ~l~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
...+|.++... +.+.+....|..+||+..|++.+++...
T Consensus 24 ~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~ 63 (231)
T 2zcx_A 24 REEAILDAARELGTERGIREITLTDIAATVGMHKSALLRY 63 (231)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHh
Confidence 34445454444 4455556889999999999999998654
No 319
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=22.44 E-value=91 Score=27.12 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=27.4
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 414 l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
..+|.++...+ .+.+-...|..+||+..||+.+++...
T Consensus 17 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~ 55 (221)
T 3c2b_A 17 QNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKW 55 (221)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHh
Confidence 34455554444 444445789999999999999999665
No 320
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=22.41 E-value=3.6e+02 Score=22.86 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=53.6
Q ss_pred hhhC-CCCcHHHHHHHhcCCHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHh
Q 011324 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372 (488)
Q Consensus 297 ~~~G-r~Pt~~ewA~a~gm~eeeLi~~l~~Gd~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiek 372 (488)
...| ...|..+.|+.+|++...+..-+..-++-+..++.....-+............+..+-+...+..++..+..
T Consensus 45 ~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 121 (218)
T 3dcf_A 45 REKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTILR 121 (218)
T ss_dssp HHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence 3446 357999999999999999988887766777777777766666666555555566666666666555555543
No 321
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=22.34 E-value=77 Score=24.30 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.5
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHhC
Q 011324 433 DKEDLARRVGITVEKLERLIFITR 456 (488)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~ar 456 (488)
+..++|+.||++...|..++...+
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~r 38 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRGL 38 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCCHHHHHHHHHhcC
Confidence 999999999999999999886543
No 322
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=22.31 E-value=84 Score=30.15 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 413 LLSKVLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 413 ~l~kI~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.+.+.-.....|.. .+...+..|||+.+|++..++..++..
T Consensus 28 sl~Ral~IL~~l~~-~~~~ltl~eia~~lgl~ksTv~RlL~t 68 (275)
T 3mq0_A 28 ALRRAVRILDLVAG-SPRDLTAAELTRFLDLPKSSAHGLLAV 68 (275)
T ss_dssp HHHHHHHHHHHHHH-CSSCEEHHHHHHHHTCC--CHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33333333333333 334689999999999999999999873
No 323
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=22.29 E-value=93 Score=26.19 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=25.4
Q ss_pred HHHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHH
Q 011324 414 LSKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLE 449 (488)
Q Consensus 414 l~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk 449 (488)
..+|-++... +.+.+....|..+||+..|++.+++.
T Consensus 9 r~~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tly 45 (180)
T 2fd5_A 9 RARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFY 45 (180)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGG
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHHH
Confidence 3444444444 44555568899999999999987763
No 324
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=22.25 E-value=2.1e+02 Score=24.08 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=49.6
Q ss_pred CcHHHHHHHhcCCHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHhh
Q 011324 303 PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKF 373 (488)
Q Consensus 303 Pt~~ewA~a~gm~eeeLi~~l~~Gd~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiekF 373 (488)
.|..+.|+.+|++...+..-...-++-+..++..+..-+..........+.+..+.+...+..++..+...
T Consensus 32 ~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 102 (204)
T 3eup_A 32 TSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSMYNDADGSL 102 (204)
T ss_dssp CCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHTCHHHHHHGGGGTT
T ss_pred CCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc
Confidence 58899999999998888877776667777777777766666655555555666666666555555544443
No 325
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=22.20 E-value=80 Score=24.90 Aligned_cols=24 Identities=8% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|...+..
T Consensus 43 ~~~~~eLa~~l~is~~tv~~~L~~ 66 (96)
T 1y0u_A 43 GRSEEEIMQTLSLSKKQLDYHLKV 66 (96)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 589999999999999999998764
No 326
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=22.10 E-value=73 Score=28.79 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
..|..|||+.|||+..++.....
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 57999999999999999988765
No 327
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=22.07 E-value=3.5e+02 Score=22.62 Aligned_cols=74 Identities=19% Similarity=0.085 Sum_probs=52.5
Q ss_pred hhhC-CCCcHHHHHHHhcCCHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhH
Q 011324 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370 (488)
Q Consensus 297 ~~~G-r~Pt~~ewA~a~gm~eeeLi~~l~~Gd~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAi 370 (488)
...| ...|..+.|+.+|++...+..-+..-++-+..++..+..-+..........+.+..+.+...+..+++.+
T Consensus 28 ~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 102 (203)
T 3f1b_A 28 SDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAPAGDPGLSPREQLRRALEGFLGFV 102 (203)
T ss_dssp HHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3446 3579999999999999999888876667777777777766666665555556666666666555555443
No 328
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=22.00 E-value=2.6e+02 Score=25.22 Aligned_cols=24 Identities=8% Similarity=-0.053 Sum_probs=21.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
+.+..|||+.+|++..+|..++..
T Consensus 62 ~~t~~eLa~~l~i~~stvs~~l~~ 85 (207)
T 2fxa_A 62 GASISEIAKFGVMHVSTAFNFSKK 85 (207)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999999999999999888764
No 329
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=21.99 E-value=1.1e+02 Score=28.04 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=23.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhC
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITR 456 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar 456 (488)
+.|.++||+.+|++...|.+++....
T Consensus 52 G~t~eeiA~~lG~s~s~V~~~LrLl~ 77 (178)
T 1r71_A 52 GKKKGDIAKEIGKSPAFITQHVTLLD 77 (178)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHGGGS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHc
Confidence 57999999999999999999988764
No 330
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=21.96 E-value=1.2e+02 Score=26.65 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=18.1
Q ss_pred cHHHHHHHhCCCHHHHHHHHHH
Q 011324 433 DKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 433 S~eEIAe~LGIS~etVk~~L~~ 454 (488)
|..|+|+.+|++..+|..+...
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 8888888888888888887663
No 331
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=21.81 E-value=97 Score=27.79 Aligned_cols=37 Identities=11% Similarity=0.272 Sum_probs=26.8
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 415 ~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+|-++..++ .+.+....|..+||+..|++.++|...
T Consensus 10 ~~Il~AA~~lF~e~G~~~ts~~~IA~~AGvs~~tlY~h 47 (235)
T 2fbq_A 10 ERILDAAEQLFAEKGFAETSLRLITSKAGVNLAAVNYH 47 (235)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHH
Confidence 3454554444 455556789999999999999998653
No 332
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=21.74 E-value=57 Score=28.58 Aligned_cols=38 Identities=8% Similarity=0.080 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 414 LSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 414 l~kI~ka~~~L~-~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
..+|-++..++. +.+-...|.++||+..||+.+++...
T Consensus 30 r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~ 68 (215)
T 2qko_A 30 RAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNY 68 (215)
T ss_dssp HHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHH
T ss_pred HHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHh
Confidence 344555555554 44546789999999999999988654
No 333
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.74 E-value=1.4e+02 Score=26.45 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHH-HhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 412 TLLSKVLEAKRLYI-QEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 412 e~l~kI~ka~~~L~-~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
....+|.++..++. +.+-...|..+||+..||+.+++...
T Consensus 40 ~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~ 80 (225)
T 2id3_A 40 RIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRR 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHH
Confidence 34445555555544 44445789999999999999998654
No 334
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=21.64 E-value=92 Score=29.11 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=26.8
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHhCCCccc
Q 011324 431 SPDKEDLARRVGITVEKLERLIFITRMPLSM 461 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ar~~lSL 461 (488)
..+.+++|+.+|||...|..++..++-+..|
T Consensus 42 ~~~Q~~lA~~~giS~a~VSR~L~~A~LP~~l 72 (189)
T 3mky_B 42 AGNISALADAENISRKIITRCINTAKLPKSV 72 (189)
T ss_dssp TTCHHHHHHHHTSCHHHHHHHHHHHHSCHHH
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHhcCCHHH
Confidence 5799999999999999999999988655433
No 335
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.54 E-value=1.6e+02 Score=26.09 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011324 412 TLLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLER 450 (488)
Q Consensus 412 e~l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~ 450 (488)
....+|.++...+ .+.+....|..+||+..|++..++..
T Consensus 16 ~~r~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~ 55 (216)
T 2oi8_A 16 QVRAEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYR 55 (216)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHH
Confidence 3444555554444 45555678999999999999998854
No 336
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=21.51 E-value=1e+02 Score=26.91 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=20.3
Q ss_pred CcHHHHHHHhCCCHHHHHHHHHH
Q 011324 432 PDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 432 pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.+..|||+.+|++..+|..++..
T Consensus 87 ~t~~eLa~~l~is~~tvs~~l~~ 109 (181)
T 2fbk_A 87 LRPTELSALAAISGPSTSNRIVR 109 (181)
T ss_dssp BCHHHHHHHCSCCSGGGSSHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 79999999999999998777653
No 337
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=21.46 E-value=60 Score=28.74 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=30.7
Q ss_pred HHHhcCCCCcHHHHHHHhC---CCHHHHHHHHHHhCCCccc
Q 011324 424 YIQEGNHSPDKEDLARRVG---ITVEKLERLIFITRMPLSM 461 (488)
Q Consensus 424 L~~elgr~pS~eEIAe~LG---IS~etVk~~L~~ar~~lSL 461 (488)
+....++..|.+|||+.++ ++..+|+..+...+.++..
T Consensus 157 l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 157 LAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp HHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred HHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 4444555689999999999 9999999999887776654
No 338
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=21.37 E-value=68 Score=27.95 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 431 SPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
.+|.++||..+|++.++|-.++..-
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l 188 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSL 188 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4699999999999999999888753
No 339
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=21.36 E-value=3.6e+02 Score=22.47 Aligned_cols=74 Identities=9% Similarity=-0.086 Sum_probs=52.3
Q ss_pred hhhC-CCCcHHHHHHHhcCCHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhH
Q 011324 297 SQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370 (488)
Q Consensus 297 ~~~G-r~Pt~~ewA~a~gm~eeeLi~~l~~Gd~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAi 370 (488)
...| ...|..+.|+.+|++...+..-...-++-+..++..+..-+............+..+.+...+-.++..+
T Consensus 21 ~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 95 (199)
T 3qbm_A 21 NVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFRSYA 95 (199)
T ss_dssp HHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHGGG
T ss_pred HHhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHh
Confidence 3446 4479999999999999888887776667778888777777666666555555566666665555554444
No 340
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=21.19 E-value=71 Score=26.97 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=21.9
Q ss_pred CCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 431 SPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 431 ~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+..|||+.+|++..+|..++..
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~ 81 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDS 81 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999999999999999988865
No 341
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=21.18 E-value=1.3e+02 Score=28.12 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=23.3
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.+...+..|||+.+|++..+|..++..
T Consensus 20 ~~~~~~~~ela~~~gl~~stv~r~l~~ 46 (249)
T 1mkm_A 20 NPGDVSVSEIAEKFNMSVSNAYKYMVV 46 (249)
T ss_dssp CSSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344689999999999999999999873
No 342
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=21.11 E-value=50 Score=28.23 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=25.0
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHH
Q 011324 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLER 450 (488)
Q Consensus 415 ~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~ 450 (488)
.+|-++... +.+.+....|..+||+..||+.+++..
T Consensus 14 ~~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~Y~ 50 (204)
T 3eup_A 14 QFIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYG 50 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTT
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHHHH
Confidence 344444444 444444578999999999999999843
No 343
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=20.85 E-value=48 Score=28.13 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=19.6
Q ss_pred HHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHH
Q 011324 415 SKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKL 448 (488)
Q Consensus 415 ~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etV 448 (488)
.+|-++...+ .+.+-...|..+||+..|++.+++
T Consensus 15 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~ 49 (199)
T 3on2_A 15 RVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAP 49 (199)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----C
T ss_pred HHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHH
Confidence 3444444444 444545789999999999998876
No 344
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=20.79 E-value=50 Score=28.42 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 412 TLLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 412 e~l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
....+|-++..++ .+.+-...|..+||+..|++.+++...
T Consensus 18 ~~R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~ 58 (212)
T 3loc_A 18 AKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYY 58 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhhh
Confidence 3344555554444 444445789999999999999998654
No 345
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=20.77 E-value=17 Score=36.61 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=45.4
Q ss_pred CCCCCHhHHHHHH-HHHHHHhHHhhCCCCCCchhhHHHHHHHHHHHHH-HHHhcCCcccchhHHHHHHHHHHHHHHHHHh
Q 011324 350 GRGISLHDLLQEG-SMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKA-IFQHSRTIRLPENIYTLLSKVLEAKRLYIQE 427 (488)
Q Consensus 350 ~~g~d~EDLIQEG-~IGL~rAiekFDpskG~rFSTYA~~wIRnaI~~~-IRk~sr~irlP~~v~e~l~kI~ka~~~L~~e 427 (488)
..|.|.+|+++.. --++.+.+.. + ...|..|....+...+... +.. + ..+..+...+..+...
T Consensus 232 P~gkDpdd~l~~~G~~~~~~~i~~-~---~~~~~~f~~~~~~~~~~~~~l~~-------~----~~~~~~~~~i~~i~~~ 296 (329)
T 4edg_A 232 PSGMDPDEYIGKYGNDAFTTFVKN-D---KKSFAHYKVSILKDEIAHNDLSY-------E----RYLKELSHDISLMKSS 296 (329)
T ss_dssp CTTCCHHHHHHHHCHHHHHHHHHH-C---CEEHHHHHHHHTHHHHHHCHHHH-------H----HHHHHHHHHHHHCCCH
T ss_pred CCCCCHHHHHHHhCHHHHHHHHHh-c---CCCHHHHHHHHHHhhccCCCCcH-------H----HHHHHHHHHHHhCCCH
Confidence 4589999999863 3333333221 1 1236667666554442111 110 1 2222222222222111
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
..+..-.+++|+.+||+++.++..+...
T Consensus 297 ~~r~~y~~~la~~~~i~~~~l~~~~~~~ 324 (329)
T 4edg_A 297 ILQQKAINDVAPFFNVSPEQLANEIQFN 324 (329)
T ss_dssp HHHHHHHHHHGGGGTCCHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHhh
Confidence 1122346789999999999998876543
No 346
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=20.76 E-value=1.6e+02 Score=25.47 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=27.0
Q ss_pred HHHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 414 LSKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 414 l~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
..+|-++... +.+.+-. .|.++||+..|++..++...
T Consensus 14 r~~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tiY~~ 51 (224)
T 1t33_A 14 KSQLIAAALAQFGEYGLH-ATTRDIAALAGQNIAAITYY 51 (224)
T ss_dssp HHHHHHHHHHHHHHHGGG-SCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHHh
Confidence 3445555444 4555556 99999999999999998654
No 347
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=20.64 E-value=66 Score=28.34 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=24.7
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 414 l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
..+|-++...+ .+.+....|..+||+..||+.+++-..
T Consensus 26 r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY~y 64 (214)
T 2oer_A 26 VASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQY 64 (214)
T ss_dssp HHHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHHHh
Confidence 34455554444 444555789999999999999998654
No 348
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=20.62 E-value=1.6e+02 Score=27.50 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=21.9
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHH
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~ 454 (488)
.+-|+..|||+.+|+|..+|++++..
T Consensus 31 ~~lPse~~La~~~~vSr~tvr~Al~~ 56 (236)
T 3edp_A 31 MLMPNETALQEIYSSSRTTIRRAVDL 56 (236)
T ss_dssp C--CCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 34679999999999999999999874
No 349
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=20.61 E-value=66 Score=27.32 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=26.7
Q ss_pred HHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 414 LSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 414 l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
..+|.++...+ .+.+-...|.++||+..|++.+++...
T Consensus 16 r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~ 54 (191)
T 4aci_A 16 RQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHH 54 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHH
Confidence 34444444444 444444689999999999999998765
No 350
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.60 E-value=3.6e+02 Score=22.25 Aligned_cols=75 Identities=12% Similarity=0.019 Sum_probs=49.2
Q ss_pred hhCC-CCcHHHHHHHhcCCHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHccCCCCCHhHHHHHHHHHHHHhHHh
Q 011324 298 QFGR-EPTLIEWAKAIGLSCRDLKSELHS-GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEK 372 (488)
Q Consensus 298 ~~Gr-~Pt~~ewA~a~gm~eeeLi~~l~~-Gd~ArekLIesnlrLV~sIAkry~~~g~d~EDLIQEG~IGL~rAiek 372 (488)
..|- ..|..+.|+++|++...+..-... -++-+..++.....-+............+..+-+...+-.++..+..
T Consensus 21 ~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 97 (191)
T 1sgm_A 21 LQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIKKTASQFDN 97 (191)
T ss_dssp HHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSS
T ss_pred HcCccccCHHHHHHHHCCCchhHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhccc
Confidence 3454 479999999999999888888875 55666666666665555544444334456666666655555554443
No 351
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=20.59 E-value=63 Score=27.59 Aligned_cols=12 Identities=25% Similarity=0.182 Sum_probs=5.8
Q ss_pred HHHHHHhCCCHH
Q 011324 435 EDLARRVGITVE 446 (488)
Q Consensus 435 eEIAe~LGIS~e 446 (488)
..||+.+|++++
T Consensus 63 ~~iA~~f~V~~~ 74 (123)
T 3qwg_A 63 AALANFFRIKAA 74 (123)
T ss_dssp HHHHHHTTSCTH
T ss_pred HHHHHHhCCCHH
Confidence 444555555444
No 352
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.33 E-value=81 Score=27.75 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=26.5
Q ss_pred HHHHHHHHH-HHHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 415 SKVLEAKRL-YIQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 415 ~kI~ka~~~-L~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
.+|-++... +.+.+-...|.++||+..|++.+.+...
T Consensus 12 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~y 49 (209)
T 2gfn_A 12 RALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHY 49 (209)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcchHHhc
Confidence 344444444 4455556789999999999999998654
No 353
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=20.33 E-value=1.3e+02 Score=27.56 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHHHH
Q 011324 412 TLLSKVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLERL 451 (488)
Q Consensus 412 e~l~kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk~~ 451 (488)
....+|.++...| .+.+....|+.+||+..||+..++...
T Consensus 48 ~tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~y 88 (260)
T 2of7_A 48 RTREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRY 88 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHHH
Confidence 3445555555554 444556789999999999999999654
No 354
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=20.28 E-value=1.1e+02 Score=26.05 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=21.2
Q ss_pred cCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011324 428 GNHSPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 428 lgr~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+..+.|+.||++.+|+|..+|..+-+
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 33468999999999999999876544
No 355
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.27 E-value=1.1e+02 Score=24.52 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=23.2
Q ss_pred CCCCcHHHHHHHhCCCHHHHHHHHHHh
Q 011324 429 NHSPDKEDLARRVGITVEKLERLIFIT 455 (488)
Q Consensus 429 gr~pS~eEIAe~LGIS~etVk~~L~~a 455 (488)
....+.+.||+.+|+++++|+..+...
T Consensus 28 Y~~Isl~~La~ll~ls~~~vE~~ls~m 54 (84)
T 1ufm_A 28 YNNITFEELGALLEIPAAKAEKIASQM 54 (84)
T ss_dssp CSEEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCeeeHHHHHHHHCcCHHHHHHHHHHH
Confidence 347899999999999999999987643
No 356
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=20.17 E-value=86 Score=22.69 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHH
Q 011324 434 KEDLARRVGITVEKLERLIFI 454 (488)
Q Consensus 434 ~eEIAe~LGIS~etVk~~L~~ 454 (488)
..+||..+||+..+|...+..
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 999999999999999888653
No 357
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=20.15 E-value=69 Score=30.05 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHhCCCHHHHHHHHH
Q 011324 417 VLEAKRLYIQEGNHSPDKEDLARRVGITVEKLERLIF 453 (488)
Q Consensus 417 I~ka~~~L~~elgr~pS~eEIAe~LGIS~etVk~~L~ 453 (488)
+.++..-+...+...++.++||+.+|+|...+..+.+
T Consensus 5 ~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~ 41 (292)
T 1d5y_A 5 IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFK 41 (292)
T ss_dssp HHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4444444555556678999999999999988887755
No 358
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=20.15 E-value=53 Score=27.96 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=23.9
Q ss_pred HHHHHHHHH-HHhcCCCCcHHHHHHHhCCCHHHHH
Q 011324 416 KVLEAKRLY-IQEGNHSPDKEDLARRVGITVEKLE 449 (488)
Q Consensus 416 kI~ka~~~L-~~elgr~pS~eEIAe~LGIS~etVk 449 (488)
+|-++...+ .+.+-...|..+||+..|++.+++-
T Consensus 7 ~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 41 (189)
T 3geu_A 7 KIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLY 41 (189)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHT
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHH
Confidence 344444443 4444456899999999999999884
Done!