Query 011327
Match_columns 488
No_of_seqs 342 out of 1557
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:50:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8g_A CRAL-TRIO domain-contai 100.0 5.5E-57 1.9E-61 459.7 19.9 271 71-345 27-304 (320)
2 1aua_A Phosphatidylinositol tr 100.0 3.9E-56 1.3E-60 447.1 21.6 270 72-345 19-289 (296)
3 1olm_A SEC14-like protein 2; l 100.0 4.4E-47 1.5E-51 397.1 24.4 248 72-326 1-249 (403)
4 3hx3_A Retinaldehyde-binding p 100.0 4.1E-46 1.4E-50 378.8 17.8 235 74-324 46-294 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 5.4E-46 1.9E-50 365.6 15.8 229 80-324 4-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.2 1.1E-11 3.8E-16 122.1 5.7 137 156-314 7-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.9 3.7E-10 1.3E-14 113.0 3.8 131 162-314 32-163 (290)
8 2dam_A ETEA protein; KIAA0887, 73.4 12 0.00042 28.5 7.2 45 79-131 13-57 (67)
9 2dhy_A CUE domain-containing p 65.2 8.4 0.00029 29.7 4.6 45 80-132 14-58 (67)
10 1wgl_A TOLL-interacting protei 64.9 7.4 0.00025 29.1 4.1 39 85-131 10-48 (59)
11 2dal_A Protein KIAA0794; FAS a 64.1 17 0.00059 27.2 6.2 41 81-130 12-52 (62)
12 1v92_A NSFL1 cofactor P47; 3-h 61.6 14 0.00047 25.5 4.9 38 84-130 5-42 (46)
13 2dah_A Ubiquilin-3; UBA domain 52.7 32 0.0011 25.0 5.8 38 86-132 11-48 (54)
14 1z96_A DNA-damage, UBA-domain 51.2 24 0.00082 23.4 4.5 21 109-129 19-39 (40)
15 3e21_A HFAF1, FAS-associated f 50.5 38 0.0013 23.9 5.5 37 84-128 5-41 (45)
16 1wr1_B Ubiquitin-like protein 50.3 34 0.0012 25.4 5.6 38 85-131 18-55 (58)
17 1vej_A Riken cDNA 4931431F19; 46.6 35 0.0012 26.6 5.4 38 85-131 30-67 (74)
18 2dna_A Unnamed protein product 46.0 44 0.0015 25.6 5.7 38 85-131 20-57 (67)
19 2bwb_A Ubiquitin-like protein 42.7 40 0.0014 23.6 4.7 25 106-130 20-44 (46)
20 1otr_A Protein CUE2; protein-p 42.4 35 0.0012 24.5 4.4 40 85-132 5-44 (49)
21 1ufz_A Hypothetical protein BA 37.9 56 0.0019 26.1 5.3 41 85-132 35-75 (83)
22 2dzl_A Protein FAM100B; UBA-li 34.7 73 0.0025 24.1 5.4 36 86-130 19-54 (66)
23 2di0_A Activating signal coint 33.1 94 0.0032 24.1 5.8 44 80-131 9-52 (71)
24 2kvs_A Uncharacterized protein 30.8 1.3E+02 0.0044 23.8 6.4 39 86-124 20-58 (80)
25 2cwb_A Chimera of immunoglobul 30.8 57 0.0019 27.3 4.5 26 106-131 79-104 (108)
26 2jy5_A Ubiquilin-1; UBA, alter 29.5 84 0.0029 22.4 4.7 24 107-130 26-49 (52)
27 3e3v_A Regulatory protein RECX 28.2 46 0.0016 30.0 3.9 77 50-131 85-162 (177)
28 2knz_A Ubiquilin-4; cytoplasm, 25.6 75 0.0026 22.8 3.9 25 107-131 25-49 (53)
29 3dfg_A Xcrecx, regulatory prot 24.7 49 0.0017 29.3 3.3 75 50-130 83-157 (162)
30 1oai_A Nuclear RNA export fact 24.6 2.1E+02 0.0072 21.0 7.4 45 80-133 3-47 (59)
31 1sbo_A Putative anti-sigma fac 23.5 2.1E+02 0.0071 22.1 6.8 50 227-282 46-95 (110)
32 1j3a_A 50S ribosomal protein L 23.5 42 0.0014 29.5 2.5 46 228-305 2-47 (142)
33 1vdl_A Ubiquitin carboxyl-term 23.2 1.5E+02 0.0051 23.2 5.2 40 84-131 24-63 (80)
34 2lnz_A Ubiquitin-like protein 23.1 15 0.00052 27.6 -0.3 12 467-478 51-62 (64)
35 3llo_A Prestin; STAS domain, c 22.6 2.4E+02 0.0083 23.3 7.4 50 226-281 65-114 (143)
36 2ka5_A Putative anti-sigma fac 22.2 2.2E+02 0.0076 23.2 6.9 51 226-282 53-103 (125)
37 2jp7_A MRNA export factor MEX6 22.2 2.3E+02 0.008 20.7 6.1 42 81-131 3-44 (57)
38 1vq8_J 50S ribosomal protein L 22.2 46 0.0016 29.4 2.5 46 228-305 10-55 (145)
39 4dgh_A Sulfate permease family 21.7 2.7E+02 0.0094 22.7 7.4 50 226-281 50-99 (130)
40 1ify_A HHR23A, UV excision rep 21.2 1.8E+02 0.0063 20.3 5.2 23 109-131 23-45 (49)
41 1q02_A Sequestosome 1; helical 21.0 69 0.0024 23.3 2.8 22 109-130 27-48 (52)
42 4b6a_O 60S ribosomal protein L 20.5 61 0.0021 30.1 3.1 49 225-305 4-52 (199)
43 2oo3_A Protein involved in cat 20.4 47 0.0016 32.5 2.5 31 259-289 233-263 (283)
No 1
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=5.5e-57 Score=459.69 Aligned_cols=271 Identities=36% Similarity=0.636 Sum_probs=246.8
Q ss_pred cccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhh
Q 011327 71 VSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (488)
Q Consensus 71 ~~s~~ied~~d~~E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRke~g~d~i~~d~~~ 150 (488)
.|++-..+ .+++|+++|++||++|.+++ ++...|| .+||||||||+||+++|.+||+++++||+++++|.++.++.+
T Consensus 27 ~~~g~~~~-lt~~q~~~l~~lR~~l~~~~-~~~~~dD-~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~ 103 (320)
T 3q8g_A 27 ALPGTPGN-LTKEQEEALLQFRSILLEKN-YKERLDD-STLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN 103 (320)
T ss_dssp SCTTSTTC-CCHHHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHHHHhcC-CCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 34444444 47889999999999999988 4566777 599999999999999999999999999999999999877655
Q ss_pred H------HHHHHHhhcCcccccCCCCCCcEEEEecCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCC
Q 011327 151 K------EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHID 224 (488)
Q Consensus 151 ~------el~evlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~ 224 (488)
+ +...+.++++++++|+|++||||+|+++|++|++++++.++.+++++++++.+|.+++.++++|+...+..++
T Consensus 104 ~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve 183 (320)
T 3q8g_A 104 NKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIE 183 (320)
T ss_dssp THHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCC
T ss_pred ccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcc
Confidence 4 4456778999999999999999999999999999988888999999999999999998888888887788899
Q ss_pred CeEEEEeCCCCCCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhccChhhhcceEEcCCcchHH
Q 011327 225 SSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSK 304 (488)
Q Consensus 225 g~tvIiDl~G~slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwklVKpFLdpkTr~KI~fl~~~~~e~ 304 (488)
++++|+|++|+++++++. .+.+++.+++++|++|||||+++||||+|++|.++|++|++||+++|++||+|+++++.+.
T Consensus 184 ~~~~IiD~~g~sl~~~~~-~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~~~~~ 262 (320)
T 3q8g_A 184 TSCTVLDLKGISLSNAYH-VLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE 262 (320)
T ss_dssp CEEEEEECTTCCHHHHHH-THHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTTHHHH
T ss_pred eeEEEEECCCCCHHHHHH-HHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCCcHHH
Confidence 999999999999998864 3788999999999999999999999999999999999999999999999999999888899
Q ss_pred HHcccCCCCCCccCCCCCCCCC-CCCCccCCCCCCCCHHHHH
Q 011327 305 LLEIIDARELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 345 (488)
Q Consensus 305 L~e~Id~~~LP~e~GGt~~~~~-~ggcl~~~~gpW~~p~~~k 345 (488)
|.++||+++||++|||+++|.+ +|||+.+|.|||++|++++
T Consensus 263 L~~~i~~~~LP~~yGG~~~~~~~~ggc~~~~~gpw~~~~~~~ 304 (320)
T 3q8g_A 263 LLKQIPIENLPVKYGGTSVLHNPNDKFYYSDIGPWRDPRYIG 304 (320)
T ss_dssp HHHHSCGGGSBGGGTSCBCCSSTTSCGGGBCBSGGGCTTTCC
T ss_pred HHhhCChhhCChhhCCCCCCCCCCCCeecCCCCCCCChhhcC
Confidence 9999999999999999999976 7999999999999998875
No 2
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=3.9e-56 Score=447.08 Aligned_cols=270 Identities=36% Similarity=0.667 Sum_probs=244.6
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhH
Q 011327 72 SSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFK 151 (488)
Q Consensus 72 ~s~~ied~~d~~E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRke~g~d~i~~d~~~~ 151 (488)
++....+ .+++|+++|++||++|.+++ ++...|| .+||||||||+||+++|.+||.++++||++++++.++.++.+.
T Consensus 19 ~~~~~~~-l~~~q~~~l~~lr~~l~~~~-~~~~~dd-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~ 95 (296)
T 1aua_A 19 LPGTPGN-LDSAQEKALAELRKLLEDAG-FIERLDD-STLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYD 95 (296)
T ss_dssp CTTSTTT-CCTTHHHHHHHHHHHHHHTT-CCSSCSH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCT
T ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHhcC-CCCCCch-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccC
Confidence 3333334 37788999999999999887 4666777 5999999999999999999999999999999999887765544
Q ss_pred HHHHHHhhcCcccccCCCCCCcEEEEecCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEe
Q 011327 152 EINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILD 231 (488)
Q Consensus 152 el~evlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tvIiD 231 (488)
+...+.++++++++|+|++||||+|+++|++|++++++..+.+++++++++.+|.+++.++++|+...+.+++++++|+|
T Consensus 96 ~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D 175 (296)
T 1aua_A 96 EKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMD 175 (296)
T ss_dssp THHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEE
T ss_pred cHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEE
Confidence 44556788899999999999999999999999999888889999999999999999998889998877788999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhccChhhhcceEEcCCcchHHHHcccCC
Q 011327 232 VQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDA 311 (488)
Q Consensus 232 l~G~slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwklVKpFLdpkTr~KI~fl~~~~~e~L~e~Id~ 311 (488)
++|++++|++.. +.+++.+++++|+||||||+++||||+|++|.++|++|||||+++|++||+|+++++.+.|.++||+
T Consensus 176 ~~g~s~~~~~~~-~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~ 254 (296)
T 1aua_A 176 LKGISISSAYSV-MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPA 254 (296)
T ss_dssp CTTCCHHHHHHH-HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCS
T ss_pred CCCCCHHHHHHH-HHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCH
Confidence 999999988753 7899999999999999999999999999999999999999999999999999998888999999999
Q ss_pred CCCCccCCCCCCCCC-CCCCccCCCCCCCCHHHHH
Q 011327 312 RELPEFLGGTCNCAD-QGGCLRSDKGPWQNPEILK 345 (488)
Q Consensus 312 ~~LP~e~GGt~~~~~-~ggcl~~~~gpW~~p~~~k 345 (488)
++||++|||+++|.+ +|||+.++.|||++|++++
T Consensus 255 ~~LP~~yGG~~~~~~~~~g~~~~~~~~w~~~~~~~ 289 (296)
T 1aua_A 255 ENLPVKFGGKSEVDESKGGLYLSDIGPWRDPKYIG 289 (296)
T ss_dssp SSSBGGGTSCBCCCGGGCCSTTCCCSGGGCGGGCC
T ss_pred hhCcHHhCCCCCCCCCCCCceeCCCCCCCChhhcc
Confidence 999999999999977 6899999999999998875
No 3
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=4.4e-47 Score=397.10 Aligned_cols=248 Identities=30% Similarity=0.470 Sum_probs=218.9
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhCC-CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhh
Q 011327 72 SSVSIEDVRDVEELQAVDAFRQSLIMDE-LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEF 150 (488)
Q Consensus 72 ~s~~ied~~d~~E~~aV~efR~~L~~~~-~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRke~g~d~i~~d~~~ 150 (488)
|++-..++ +++|+++|++||++|.+.. ++| ..|| .+||||||||+||+++|.+||+++++||++++++.++.. ..
T Consensus 1 ~~g~~~~l-~~~q~~~l~~lr~~l~~~~~~l~-~~dD-~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~-~~ 76 (403)
T 1olm_A 1 MSGRVGDL-SPRQKEALAKFRENVQDVLPALP-NPDD-YFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISW-QP 76 (403)
T ss_dssp CCSBTTBC-CHHHHHHHHHHHHHHGGGGGGSS-CCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGS-CC
T ss_pred CCCCccCC-CHHHHHHHHHHHHHHHhhccCCC-CCCh-hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccc-CC
Confidence 34444444 7899999999999998874 465 4666 589999999999999999999999999999999888763 22
Q ss_pred HHHHHHHhhcCcccccCCCCCCcEEEEecCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEE
Q 011327 151 KEINEVLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSIL 230 (488)
Q Consensus 151 ~el~evlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tvIi 230 (488)
++ .+.++++.+++|+|++||||+|+++|++|++++++..+.+++++++++++|.+++.+. .++...+.+++++++|+
T Consensus 77 ~~--~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~-~~s~~~g~~v~~~~~I~ 153 (403)
T 1olm_A 77 PE--VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA-HQTTKLGRKVETITIIY 153 (403)
T ss_dssp CH--HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HHHHHHTSCCCCEEEEE
T ss_pred HH--HHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHH-hhHHhhCCcccceEEEE
Confidence 22 2456778889999999999999999999999988888999999999999999998643 34444556799999999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhccChhhhcceEEcCCcchHHHHcccC
Q 011327 231 DVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIID 310 (488)
Q Consensus 231 Dl~G~slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwklVKpFLdpkTr~KI~fl~~~~~e~L~e~Id 310 (488)
|++|+++++++++.+++++.+++++|+||||||+++||||+|++|.++|++|||||+++|++||+|+++++.+.|.++||
T Consensus 154 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~ 233 (403)
T 1olm_A 154 DCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHIS 233 (403)
T ss_dssp ECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSC
T ss_pred ECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChhHHHHHHhhcC
Confidence 99999999998888899999999999999999999999999999999999999999999999999999888889999999
Q ss_pred CCCCCccCCCCCCCCC
Q 011327 311 ARELPEFLGGTCNCAD 326 (488)
Q Consensus 311 ~~~LP~e~GGt~~~~~ 326 (488)
+++||++|||++++++
T Consensus 234 ~~~LP~~yGG~~~~~~ 249 (403)
T 1olm_A 234 PDQVPVEYGGTMTDPD 249 (403)
T ss_dssp GGGSBGGGTSSBCCTT
T ss_pred hhhCchhhCCCcCCCC
Confidence 9999999999998853
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=4.1e-46 Score=378.75 Aligned_cols=235 Identities=20% Similarity=0.323 Sum_probs=198.2
Q ss_pred ccccCCCCHH--HHHHHHHHHHHHHhCCCCC-----------CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Q 011327 74 VSIEDVRDVE--ELQAVDAFRQSLIMDELLP-----------ERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFG 140 (488)
Q Consensus 74 ~~ied~~d~~--E~~aV~efR~~L~~~~~Lp-----------~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRke~g 140 (488)
++.+++++.+ .+++|++||+||.++++++ .+.|| .+|+||||||+||+++|.+||.++++||++++
T Consensus 46 ~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD-~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~ 124 (316)
T 3hx3_A 46 KAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDS-GFFLRFIRARKFNVGRAYELLRGYVNFRLQYP 124 (316)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc
Confidence 4456666544 4689999999999999874 35666 59999999999999999999999999999998
Q ss_pred CCCcccchhhHHHHHHHhhc-CcccccCCCCCCcEEEEecCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhh
Q 011327 141 VDTIMEDFEFKEINEVLSYY-PHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAA 219 (488)
Q Consensus 141 ~d~i~~d~~~~el~evlk~~-p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~ 219 (488)
. ++.+..++++..+++.+ +.+++|+|++||||+|+++|++|++++ +.+++++++++++|.++.. .
T Consensus 125 ~--~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~----~~~~~~r~~~~~lE~~l~~--------~ 190 (316)
T 3hx3_A 125 E--LFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI----TFDEILQAYCFILEKLLEN--------E 190 (316)
T ss_dssp G--GTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS----CHHHHHHHHHHHHHHHTTS--------H
T ss_pred h--hhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCC----CHHHHHHHHHHHHHHHHhc--------c
Confidence 3 33444556666656554 567889999999999999999999874 7899999999999998753 2
Q ss_pred hCCCCCeEEEEeCCCCCCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhccChhhhcceEEcCC
Q 011327 220 KRHIDSSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGN 299 (488)
Q Consensus 220 ~~~i~g~tvIiDl~G~slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwklVKpFLdpkTr~KI~fl~~ 299 (488)
..+++|+++|+|++|++++|+.......++.+++++|++||+||+++||||+|++|.++|+++||||+++|++||+|+++
T Consensus 191 ~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~ 270 (316)
T 3hx3_A 191 ETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGD 270 (316)
T ss_dssp HHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEET
T ss_pred cCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCC
Confidence 34678999999999999998755456789999999999999999999999999999999999999999999999999987
Q ss_pred cchHHHHcccCCCCCCccCCCCCCC
Q 011327 300 KYQSKLLEIIDARELPEFLGGTCNC 324 (488)
Q Consensus 300 ~~~e~L~e~Id~~~LP~e~GGt~~~ 324 (488)
++ +.|.++||+++||++|||++++
T Consensus 271 ~~-~~L~~~I~~~~LP~eyGG~~~~ 294 (316)
T 3hx3_A 271 DL-SGFYQEIDENILPSDFGGTLPK 294 (316)
T ss_dssp CC-HHHHHHSCGGGSBGGGTSSBCC
T ss_pred CH-HHHHhhCCHhhCcHhhCCCCCC
Confidence 65 7899999999999999999975
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=5.4e-46 Score=365.64 Aligned_cols=229 Identities=24% Similarity=0.346 Sum_probs=193.9
Q ss_pred CCHHHHHHHHHHHHHHHhCC--CCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCcccchhhHHHHHHH
Q 011327 80 RDVEELQAVDAFRQSLIMDE--LLPERHDDYHMMLRFLKARKFDIDKAKHMWAEMLQWRKEFGVDTIMEDFEFKEINEVL 157 (488)
Q Consensus 80 ~d~~E~~aV~efR~~L~~~~--~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~~l~WRke~g~d~i~~d~~~~el~evl 157 (488)
+++.|+++|++||+++.+++ .+|...|| .+|+||||||+||+++|.+||.++++||++++. +..+..+.++...+
T Consensus 4 ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd-~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~--i~~~~~~~~~~~~~ 80 (262)
T 1r5l_A 4 MSPLLQPGLAALRRRAREAGVPLAPLPLTD-SFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE--ISADLHPRSIIGLL 80 (262)
T ss_dssp -----CTTHHHHHHHHHHHTCCCSSSCCCH-HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH--HHSCCCGGGTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcccCCCCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChH--hhhcCChHHHHHHH
Confidence 46778899999999998775 45677777 599999999999999999999999999999862 32333334444444
Q ss_pred hh-cCcccccCCCCCCcEEEEecCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCCCC
Q 011327 158 SY-YPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVG 236 (488)
Q Consensus 158 k~-~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tvIiDl~G~s 236 (488)
+. +..+++|+|++||||+|+++|++|++++ +..++++++++++|.++.. ...+++|+++|+|++|++
T Consensus 81 ~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~----~~~~~~r~~~~~~E~~~~~--------~~~~~~g~~~I~D~~g~s 148 (262)
T 1r5l_A 81 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF----TAYDVFRVSLITSELIVQE--------VETQRNGIKAIFDLEGWQ 148 (262)
T ss_dssp HTTCEEECSSCCTTCCEEEEEEGGGCCTTTS----CHHHHHHHHHHHHHHHTTS--------HHHHHHCEEEEEECTTCC
T ss_pred HcCCccCCCCcCCCCCEEEEEeccccCcccC----CHHHHHHHHHHHHHHHHhC--------hhhcccceEEEEECCCCC
Confidence 44 3567789999999999999999999874 6788999999999987653 123467999999999999
Q ss_pred CCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhccChhhhcceEEcCCcchHHHHcccCCCCCCc
Q 011327 237 LKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPE 316 (488)
Q Consensus 237 lk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwklVKpFLdpkTr~KI~fl~~~~~e~L~e~Id~~~LP~ 316 (488)
++|+.....++++.+++++|+||||||+++||||+|++|.++|++|+|||+++|++||+|+++++.+.|.++|| ++||+
T Consensus 149 ~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~LP~ 227 (262)
T 1r5l_A 149 FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DILPL 227 (262)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTSCG
T ss_pred HHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhCcH
Confidence 99886555789999999999999999999999999999999999999999999999999999888899999999 99999
Q ss_pred cCCCCCCC
Q 011327 317 FLGGTCNC 324 (488)
Q Consensus 317 e~GGt~~~ 324 (488)
+|||++..
T Consensus 228 ~yGG~~~~ 235 (262)
T 1r5l_A 228 EYGGEEFS 235 (262)
T ss_dssp GGTCSSCC
T ss_pred hhCCCCCC
Confidence 99999754
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.19 E-value=1.1e-11 Score=122.06 Aligned_cols=137 Identities=14% Similarity=0.155 Sum_probs=111.3
Q ss_pred HHhhcCcccccCCCCCCcEEEEecCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCCC
Q 011327 156 VLSYYPHGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGV 235 (488)
Q Consensus 156 vlk~~p~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tvIiDl~G~ 235 (488)
+.+....+..|.|++||||+++.+.+++... .+++.++.|++..++.... ...++|+|+.|+
T Consensus 7 i~~~~ify~~G~d~dGrpViv~~~~~l~~~~----~D~e~Ll~~vl~tl~~~~~--------------~~y~lV~d~T~~ 68 (256)
T 3pg7_A 7 LKTLSIFYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYYA--------------KPYEIVVDLTHT 68 (256)
T ss_dssp HHHHTSEEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTTT--------------SCEEEEEECTTC
T ss_pred HHHcCCEEEcCcCCCCCEEEEEEeecCCCCC----CCHHHHHHHHHHHHHHhcC--------------CCeEEEEECCCC
Confidence 3344444556899999999999999998865 3788888777776665432 478999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHH-HHhccChhhhcceEEcCCcchHHHHcccCCCCC
Q 011327 236 GLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT-VKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (488)
Q Consensus 236 slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwkl-VKpFLdpkTr~KI~fl~~~~~e~L~e~Id~~~L 314 (488)
+..+.+. .++++.+..++...|...|+++||+|++++|+..|+. .++|.+.+..+|++++++ .++|.++|+.++|
T Consensus 69 ~~~n~p~--~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s--l~eL~~~i~~~~L 144 (256)
T 3pg7_A 69 GPSNRFK--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC--PGKLAEHIEHEQQ 144 (256)
T ss_dssp CGGGCCC--HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS--TTGGGGTSCGGGC
T ss_pred CcccCCc--HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC--HHHHHhhcCHHHc
Confidence 9876553 7899999999999999999999999999999977665 456666688899999965 5889999987776
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.92 E-value=3.7e-10 Score=113.04 Aligned_cols=131 Identities=14% Similarity=0.160 Sum_probs=98.3
Q ss_pred cccccCCCCCCcEEEEecCccCcchhhhcccHHHHHHHHHHHHHHHHHhhChhhhhhhhCCCCCeEEEEeCCCCCCCCCC
Q 011327 162 HGYHGVDKEGRPVYIERLGKVDSNKLMQVTTMDRYIRYHVQGFEKAFAVKFPACTIAAKRHIDSSTSILDVQGVGLKNFS 241 (488)
Q Consensus 162 ~~~~G~Dk~GRPVli~rlg~~d~~kl~~~~t~e~~ir~~v~~~E~~l~~~~pa~s~~~~~~i~g~tvIiDl~G~slk~~~ 241 (488)
.+..|.|++||||+++.+++++... .+++.++.|++..++... -...++|+|+++++..+-.
T Consensus 32 f~~~g~d~dG~PViv~~~~~~~~~~----~D~e~Lly~il~tl~~~~--------------~~~y~lV~D~T~~~~~n~p 93 (290)
T 3peg_A 32 FYQAGTSKAGNPIFYYVARRFKTGQ----INGDLLIYHVLLTLKPYY--------------AKPYEIVVDLTHTGPSNRF 93 (290)
T ss_dssp EEEEEECTTSCEEEEEEGGGCCBTT----BCHHHHHHHHHHHHTTTT--------------TSCEEEEEECTTCCGGGCC
T ss_pred EEEeccCCCCCEEEEEEeecCCccC----CCHHHHHHHHHHHHHHhc--------------CCCeEEEEEcCCCCccCCC
Confidence 3345889999999999999998765 377777777666665443 2479999999999987654
Q ss_pred hHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHH-HHHHhccChhhhcceEEcCCcchHHHHcccCCCCC
Q 011327 242 KNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLW-NTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDAREL 314 (488)
Q Consensus 242 ~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lw-klVKpFLdpkTr~KI~fl~~~~~e~L~e~Id~~~L 314 (488)
. .++++.+..++...|+..|+++||+|++.+|+..+ ...++|...+..+|+.++..- ..|.++++.+++
T Consensus 94 ~--~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~~--~~L~~~i~~~~~ 163 (290)
T 3peg_A 94 K--TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP--GKLAEHIEHEQQ 163 (290)
T ss_dssp C--HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESSS--CC----------
T ss_pred h--HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCCH--HHHHhhCCHHHh
Confidence 3 78999999999999999999999999999998754 566788888999999998653 448888887754
No 8
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.44 E-value=12 Score=28.54 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011327 79 VRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (488)
Q Consensus 79 ~~d~~E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~ 131 (488)
.++..+.+.|.+|..... ..|......||.+.+||++.|+..+-+
T Consensus 13 ~Ls~~~~e~i~qF~~ITg--------~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 13 DLTQEQTEKLLQFQDLTG--------IESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CCCHHHHHHHHHHHHHHC--------CSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hcChhHHHHHHHHHHHhC--------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 446777889999998872 124457899999999999999887754
No 9
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.18 E-value=8.4 Score=29.65 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011327 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (488)
Q Consensus 80 ~d~~E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~~ 132 (488)
...+..+++++|++.. | ..|. ..+..-|+++++|++.|++.|.++
T Consensus 14 ~~~~~~~~v~~L~~MF------P-~lD~-~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 14 RRLEFNQAMDDFKTMF------P-NMDY-DIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCSHHHHHHHHHHC------S-SSCH-HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3344567888888876 2 2344 578899999999999999998764
No 10
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=64.86 E-value=7.4 Score=29.13 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011327 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (488)
Q Consensus 85 ~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~ 131 (488)
++.|++|++.. | ..+. ..+-.-|++++.|++.|+++|.+
T Consensus 10 ee~l~~L~emF------P-~ld~-~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMF------P-NMDQ-EVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHC------S-SSCH-HHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHC------C-CCCH-HHHHHHHHHcCCCHHHHHHHHHc
Confidence 36677777765 3 2344 57899999999999999999875
No 11
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.15 E-value=17 Score=27.16 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011327 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (488)
Q Consensus 81 d~~E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~ 130 (488)
...+.+.|.+|..... .+ ......||.+.+||++.|+..+-
T Consensus 12 s~~~~e~i~qF~~iTg--------~~-~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 12 SSALKGLIQQFTTITG--------AS-ESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp CHHHHHHHHHHHHHTC--------CC-HHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhC--------CC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 5666788999987652 12 35789999999999999998774
No 12
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=61.61 E-value=14 Score=25.52 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011327 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (488)
Q Consensus 84 E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~ 130 (488)
+.+.|.+|...-. .+ ......||.+.+||++.|+..+-
T Consensus 5 ~~~~i~~F~~iTg--------~~-~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 5 RQDALREFVAVTG--------AE-EDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp HHHHHHHHHHHTC--------CC-HHHHHHHHHHTTSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhC--------cC-HHHHHHHHHHcCCCHHHHHHHHH
Confidence 4567888886641 12 35789999999999999988763
No 13
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.74 E-value=32 Score=25.01 Aligned_cols=38 Identities=18% Similarity=0.084 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011327 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (488)
Q Consensus 86 ~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~~ 132 (488)
+.|++|++.= +.|.+.-++-|++.++|+++|++.|...
T Consensus 11 ~~l~~L~~MG---------F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSMG---------FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566666552 3454456899999999999999988653
No 14
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=51.18 E-value=24 Score=23.38 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 011327 109 HMMLRFLKARKFDIDKAKHMW 129 (488)
Q Consensus 109 ~~LLRFLrArkfDvekA~k~L 129 (488)
+...+.|+++++|++.|...|
T Consensus 19 ~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 19 LEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 457899999999999998765
No 15
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=50.51 E-value=38 Score=23.89 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 011327 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (488)
Q Consensus 84 E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~ 128 (488)
..+.|.+|.+.- ..+|...-..||.+.+||++.|+..
T Consensus 5 ~de~ia~F~~iT--------G~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACT--------GIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHH--------CCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHH--------CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 457888998865 2355346789999999999999753
No 16
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=50.27 E-value=34 Score=25.36 Aligned_cols=38 Identities=8% Similarity=-0.008 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011327 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (488)
Q Consensus 85 ~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~ 131 (488)
.+.|++|++.= +.|.+..++=|++.++|+++|++.|..
T Consensus 18 ~~qi~~L~~MG---------F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDMG---------FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35666666552 344456799999999999999998864
No 17
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=46.60 E-value=35 Score=26.63 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011327 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (488)
Q Consensus 85 ~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~ 131 (488)
.+.|++|+++= +.|.+..++=|++.++|+++|++.|..
T Consensus 30 e~qi~qL~eMG---------F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 30 QQELEELKALG---------FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45677777653 334456799999999999999988754
No 18
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.95 E-value=44 Score=25.60 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011327 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (488)
Q Consensus 85 ~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~ 131 (488)
..+|++|++.= +.|.+.-++=|++.+.|+++|++.|..
T Consensus 20 ~~ql~qL~~MG---------F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAMG---------FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHHT---------CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45677776553 345456699999999999999988865
No 19
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=42.71 E-value=40 Score=23.61 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=20.5
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHH
Q 011327 106 DDYHMMLRFLKARKFDIDKAKHMWA 130 (488)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~k~L~ 130 (488)
.|.+..++=|++.++|+++|++.|.
T Consensus 20 ~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 20 FDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4444578999999999999998774
No 20
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=42.45 E-value=35 Score=24.48 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011327 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (488)
Q Consensus 85 ~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~~ 132 (488)
++.++.|.+.. |.. |...+-+-|+++++|+++|+++|.+.
T Consensus 5 e~~v~~L~EMF------P~~--~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 5 ESKLSILMDMF------PAI--SKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHC------SSS--CHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHC------CCC--CHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34555555543 432 33468899999999999999998764
No 21
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=37.86 E-value=56 Score=26.12 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Q 011327 85 LQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEM 132 (488)
Q Consensus 85 ~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~~ 132 (488)
...|+++|..|-. ...| ..|.+-....+||+++|+..+.+-
T Consensus 35 ~SCLd~iR~VlGd------sV~e-~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 35 YSCLDHMREVLGD------AVPD-DILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHTTT------TSCH-HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------cCCH-HHHHHHHHHhcCCHHHHHHHHHhc
Confidence 4678888888832 2345 368888999999999999988653
No 22
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.70 E-value=73 Score=24.08 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 011327 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWA 130 (488)
Q Consensus 86 ~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~ 130 (488)
+.|.+|...-. .++ .....||.+.+||++.|+..+-
T Consensus 19 ~~i~qF~~iTg--------~~~-~~A~~~Le~~~WdLe~Al~~ff 54 (66)
T 2dzl_A 19 VMINQFVLAAG--------CAA-DQAKQLLQAAHWQFETALSTFF 54 (66)
T ss_dssp HHHHHHHHHHC--------CCH-HHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHcC--------CCH-HHHHHHHHHcCCCHHHHHHHHH
Confidence 67888887651 133 5689999999999999988774
No 23
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.08 E-value=94 Score=24.05 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011327 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (488)
Q Consensus 80 ~d~~E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~ 131 (488)
..++-...|.++++.+ |. ..+ .++.+.|..++.|+|.++..|.+
T Consensus 9 ~~~~l~s~I~qV~DLf------Pd-LG~-gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 9 CGVELDSLISQVKDLL------PD-LGE-GFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSHHHHHHHHHHHHHC------CS-SCH-HHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHc------cc-CCH-HHHHHHHHHhCCCHHHHHHHHHc
Confidence 3566678888888776 33 344 47999999999999999998865
No 24
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=30.85 E-value=1.3e+02 Score=23.82 Aligned_cols=39 Identities=8% Similarity=0.174 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHH
Q 011327 86 QAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDK 124 (488)
Q Consensus 86 ~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvek 124 (488)
.-+.+|-+++..+..+|..-+|++.|.+||....+|-+.
T Consensus 20 dp~g~LA~~i~~D~~FPK~~~d~~eIs~Yle~~~~~~~~ 58 (80)
T 2kvs_A 20 TPFGILAEHVSEDKAFPRLEERHQVIRAYVMSNYTDHQL 58 (80)
T ss_dssp CHHHHHHHHHHTSCCCCSSCSSSHHHHHHHHHHCCCHHH
T ss_pred ChHHHHHHHHhhCcCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 567788999988999999889999999999998888543
No 25
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=30.76 E-value=57 Score=27.34 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=21.8
Q ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011327 106 DDYHMMLRFLKARKFDIDKAKHMWAE 131 (488)
Q Consensus 106 dD~~~LLRFLrArkfDvekA~k~L~~ 131 (488)
.|.+..++=|++.++|+++|++.|.+
T Consensus 79 ~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 79 QDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 44456899999999999999998864
No 26
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=29.45 E-value=84 Score=22.44 Aligned_cols=24 Identities=25% Similarity=0.092 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHcCCCHHHHHHHHH
Q 011327 107 DYHMMLRFLKARKFDIDKAKHMWA 130 (488)
Q Consensus 107 D~~~LLRFLrArkfDvekA~k~L~ 130 (488)
|.+..++=|++.++|+++|++.|.
T Consensus 26 ~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 26 NREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445678999999999999998774
No 27
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=28.20 E-value=46 Score=29.96 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=40.4
Q ss_pred hcchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHH-HHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHH
Q 011327 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDA-FRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHM 128 (488)
Q Consensus 50 ~s~~~~~s~~k~~~~r~~~~~~~s~~ied~~d~~E~~aV~e-fR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~ 128 (488)
-..+++.-|+.||- +..+..-+++++.++++.+...+ +++.+......+ ......-+.+||..++|+.+.+...
T Consensus 85 G~~~I~~eL~~KGI----~~~~I~~al~~~~~~de~e~a~~l~~Kk~~~~~~~~-~~~~~~K~~~~L~rrGF~~~~I~~v 159 (177)
T 3e3v_A 85 GPKVIKLNLSKKGI----DDNIAEDALILYTDKLQVEKGVTLAEKLANRYSHDS-YRNKQNKIKQSLLTKGFSYDIIDTI 159 (177)
T ss_dssp CHHHHHHHHHTTTC----CHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHHHcCC----CHHHHHHHHHhCCchhHHHHHHHHHHHHHhhccCCC-hHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 34567777877771 22222223344433344333333 333332211111 0111235889999999999988877
Q ss_pred HHH
Q 011327 129 WAE 131 (488)
Q Consensus 129 L~~ 131 (488)
+.+
T Consensus 160 l~~ 162 (177)
T 3e3v_A 160 IQE 162 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 28
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=25.56 E-value=75 Score=22.79 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=21.0
Q ss_pred cHHHHHHHHHHcCCCHHHHHHHHHH
Q 011327 107 DYHMMLRFLKARKFDIDKAKHMWAE 131 (488)
Q Consensus 107 D~~~LLRFLrArkfDvekA~k~L~~ 131 (488)
|.+..++-|+++++|+++|++.|..
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4456789999999999999998864
No 29
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=24.74 E-value=49 Score=29.28 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=39.1
Q ss_pred hcchhhhhhhcccCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 011327 50 ASTKFKHSLKKKSSRRKSDGRVSSVSIEDVRDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMW 129 (488)
Q Consensus 50 ~s~~~~~s~~k~~~~r~~~~~~~s~~ied~~d~~E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L 129 (488)
-..++++.|+.||- +..+..-.++++.+++...+...++..+.. ..+.......-+.+||..++|+.+.+...+
T Consensus 83 G~~~I~~eL~~KGI----~~~~I~~al~~~~~de~e~a~~l~~Kk~~~--~~~~~~~~k~K~~~~L~rrGF~~~~I~~~l 156 (162)
T 3dfg_A 83 GPLHIRAELGTHGL----DSDAVSAAMATFEGDWTENALDLIRRRFGE--DGPVDLAQRRKAADLLARRGFDGNSIRLAT 156 (162)
T ss_dssp CHHHHHHHHHHTTC----CHHHHHHHHTTCCSCHHHHHHHHHHHHHCT--TCCCSHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cHHHHHHHHHHcCC----CHHHHHHHHHhCcHhHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 34567788887772 222222233444322333333333433321 112111222458899999999998887665
Q ss_pred H
Q 011327 130 A 130 (488)
Q Consensus 130 ~ 130 (488)
.
T Consensus 157 ~ 157 (162)
T 3dfg_A 157 R 157 (162)
T ss_dssp T
T ss_pred h
Confidence 4
No 30
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=24.57 E-value=2.1e+02 Score=21.00 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 011327 80 RDVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAEML 133 (488)
Q Consensus 80 ~d~~E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~~l 133 (488)
.++++++-|.+|.+.-. .+- .+-.++|...+||.++|.+.+.+..
T Consensus 3 ls~~q~~mv~~~s~~Tg--------mn~-~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 3 LSPEQQEMLQAFSTQSG--------MNL-EWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46777788888887652 222 5789999999999999999887644
No 31
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=23.49 E-value=2.1e+02 Score=22.15 Aligned_cols=50 Identities=8% Similarity=0.090 Sum_probs=35.8
Q ss_pred EEEEeCCCCCCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHH
Q 011327 227 TSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTV 282 (488)
Q Consensus 227 tvIiDl~G~slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwklV 282 (488)
.+|+|+++++. ++...+..+..+.+.++. +=..+.++|++.-+.-++.+.
T Consensus 46 ~vvlDls~v~~--iDssgl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~~ 95 (110)
T 1sbo_A 46 KIVLDLSSVSY--MDSAGLGTLVVILKDAKI----NGKEFILSSLKESISRILKLT 95 (110)
T ss_dssp EEEEECTTCCC--BCHHHHHHHHHHHHHHHH----TTCEEEEESCCHHHHHHHHHT
T ss_pred EEEEECCCCcE--EccHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHHHHh
Confidence 57999999984 566567777766665543 347789999988777666643
No 32
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=23.45 E-value=42 Score=29.50 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=31.4
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhccChhhhcceEEcCCcchHHH
Q 011327 228 SILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKL 305 (488)
Q Consensus 228 vIiDl~G~slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwklVKpFLdpkTr~KI~fl~~~~~e~L 305 (488)
+|||.+|..+.-+. ..+.++|. .=..|+|||| +||.|.|+++...+
T Consensus 2 ~viDA~g~~LGRLA-------s~vAk~L~-----~Gd~VVViNa--------------------eki~iTG~k~~~K~ 47 (142)
T 1j3a_A 2 RIINADGLILGRLA-------SRVAKMLL-----EGEEVVIVNA--------------------EKAVITGNREVIFS 47 (142)
T ss_dssp EEEECTTBBHHHHH-------HHHHHHHH-----TTCCEEEECG--------------------GGCEEESCHHHHHH
T ss_pred EEEeCCCCchHHHH-------HHHHHHHh-----cCCEEEEEeC--------------------eeeEecccHHhhee
Confidence 58899997764332 23333333 4567999998 89999998765554
No 33
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.23 E-value=1.5e+02 Score=23.23 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011327 84 ELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (488)
Q Consensus 84 E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~ 131 (488)
....|++||+.- -.+|..+|.--|.|.+.|+..|+.+|.+
T Consensus 24 ~q~lLnQLrEIT--------GiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 24 QQTFLNQLREIT--------GINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHHS--------CCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 345788888764 3577788999999999999999998864
No 34
>2lnz_A Ubiquitin-like protein MDY2; dimerization, homodimerization, protein binding; NMR {Saccharomyces cerevisiae}
Probab=23.06 E-value=15 Score=27.61 Aligned_cols=12 Identities=50% Similarity=0.775 Sum_probs=9.7
Q ss_pred chhhhhccccee
Q 011327 467 FPLQRLQKGFVL 478 (488)
Q Consensus 467 ~~~~~~~~~~~~ 478 (488)
..|||||||+-|
T Consensus 51 ~~LqRLQKGWeL 62 (64)
T 2lnz_A 51 QVMERLQKGWSL 62 (64)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc
Confidence 579999999754
No 35
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=22.58 E-value=2.4e+02 Score=23.34 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=36.7
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHH
Q 011327 226 STSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT 281 (488)
Q Consensus 226 ~tvIiDl~G~slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwkl 281 (488)
-.+|+|+++++ .++...+..+..+.+.++ .+=.+++++|++.-+.-++..
T Consensus 65 ~~vvlDls~v~--~iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~ 114 (143)
T 3llo_A 65 HTVILDFTQVN--FMDSVGVKTLAGIVKEYG----DVGIYVYLAGCSAQVVNDLTS 114 (143)
T ss_dssp SEEEEECTTCC--CCCHHHHHHHHHHHHHHH----TTTCEEEEESCCHHHHHHHHH
T ss_pred eEEEEECCCCc--cccHHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHHHHh
Confidence 46999999988 456666777777666444 466899999998777665554
No 36
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=22.24 E-value=2.2e+02 Score=23.22 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=37.2
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHH
Q 011327 226 STSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTV 282 (488)
Q Consensus 226 ~tvIiDl~G~slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwklV 282 (488)
-.+|+|+++++. ++...+..+..+.+.++. +=.++.++|++.-++-++.+.
T Consensus 53 ~~vvlDls~V~~--iDSsGl~~L~~~~~~~~~----~g~~l~l~~~~~~v~~~l~~~ 103 (125)
T 2ka5_A 53 NKIFLVLSDVES--IDSFSLGVIVNILKSISS----SGGFFALVSPNEKVERVLSLT 103 (125)
T ss_dssp CEEEEECTTCSC--CCHHHHHHHHHHHHHHHH----HTCEEEEECCCHHHHHHHHHT
T ss_pred CEEEEECCCCCE--EcHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHHHHHHHc
Confidence 468999999984 565566776666665543 347899999998887777654
No 37
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=22.22 E-value=2.3e+02 Score=20.69 Aligned_cols=42 Identities=5% Similarity=0.125 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHcCCCHHHHHHHHHH
Q 011327 81 DVEELQAVDAFRQSLIMDELLPERHDDYHMMLRFLKARKFDIDKAKHMWAE 131 (488)
Q Consensus 81 d~~E~~aV~efR~~L~~~~~Lp~~~dD~~~LLRFLrArkfDvekA~k~L~~ 131 (488)
++.+.+-|.+|.+.-. .+- ++-..+|...+||.++|.+.+.+
T Consensus 3 ~~~q~~mv~~~s~~T~--------Mn~-e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 3 NPVQLELLNKLHLETK--------LNA-EYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CHHHHHHHHHHHHHHC--------SCH-HHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC--------CCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 5667777888776652 222 57899999999999999999887
No 38
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=22.22 E-value=46 Score=29.38 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=31.7
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhccChhhhcceEEcCCcchHHH
Q 011327 228 SILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKL 305 (488)
Q Consensus 228 vIiDl~G~slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwklVKpFLdpkTr~KI~fl~~~~~e~L 305 (488)
+|||.+|..+.-+. ..+.++|. .=..|+|||| +||.|.|+++...+
T Consensus 10 ~viDA~g~~LGRLA-------s~vAk~L~-----~Gd~VVViNa--------------------eki~iTG~k~~~K~ 55 (145)
T 1vq8_J 10 VIVDARDCIMGRVA-------SQVAEQAL-----DGETVAVVNA--------------------ERAVITGREEQIVE 55 (145)
T ss_dssp EEEECTTBBHHHHH-------HHHHHHHH-----TTCCEEEECG--------------------GGCEEESCHHHHHH
T ss_pred EEEeCCCCchHHHH-------HHHHHHHh-----cCCEEEEEeC--------------------EeeEecchhhhhee
Confidence 68899997764332 23333333 4567999998 89999998765554
No 39
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=21.70 E-value=2.7e+02 Score=22.66 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=37.2
Q ss_pred eEEEEeCCCCCCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHH
Q 011327 226 STSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNT 281 (488)
Q Consensus 226 ~tvIiDl~G~slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwkl 281 (488)
-.+|+|+++++. ++...+..+..+.+-++ .+=.+++++|+..-+.-++..
T Consensus 50 ~~vvlDls~v~~--iDssgl~~L~~~~~~~~----~~g~~l~l~~~~~~v~~~l~~ 99 (130)
T 4dgh_A 50 QILILRLKWVPF--MDITGIQTLEEMIQSFH----KRGIKVLISGANSRVSQKLVK 99 (130)
T ss_dssp SEEEEECTTCCC--CCHHHHHHHHHHHHHHH----TTTCEEEEECCCHHHHHHHHH
T ss_pred CEEEEECCCCCc--ccHHHHHHHHHHHHHHH----HCCCEEEEEcCCHHHHHHHHH
Confidence 568999999884 56666777777776544 566899999998877666554
No 40
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.20 E-value=1.8e+02 Score=20.29 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=19.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q 011327 109 HMMLRFLKARKFDIDKAKHMWAE 131 (488)
Q Consensus 109 ~~LLRFLrArkfDvekA~k~L~~ 131 (488)
+...+=|+++++|+++|.+.|..
T Consensus 23 ~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 23 ERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHh
Confidence 46889999999999999988754
No 41
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=20.98 E-value=69 Score=23.30 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 011327 109 HMMLRFLKARKFDIDKAKHMWA 130 (488)
Q Consensus 109 ~~LLRFLrArkfDvekA~k~L~ 130 (488)
-+|-|.|.+.++|+.+|++.+.
T Consensus 27 GWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 27 GWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp SHHHHHHHHTTTCHHHHHHHHT
T ss_pred cHHHHHHHHccCCHHHHHHHhh
Confidence 4799999999999999998874
No 42
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=20.52 E-value=61 Score=30.09 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=32.7
Q ss_pred CeEEEEeCCCCCCCCCChHHHHHHHHHHHHhcccccccccEEEEEecChHHHHHHHHHHhccChhhhcceEEcCCcchHH
Q 011327 225 SSTSILDVQGVGLKNFSKNARELILRLQKIDGDNYPETLHQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSK 304 (488)
Q Consensus 225 g~tvIiDl~G~slk~~~~~~~~lik~l~kilq~~YPErL~rI~IVNaP~~f~~lwklVKpFLdpkTr~KI~fl~~~~~e~ 304 (488)
+-++|||.+|..+.-+.. . +.+.|. .=..|.|||| +||.|.|+++...
T Consensus 4 ~~~vVIDA~g~vLGRLAS---~----VAk~L~-----~Gd~VVVVNa--------------------eki~iTG~k~~~K 51 (199)
T 4b6a_O 4 QPVVVIDAKDHLLGRLAS---T----IAKQLL-----NGQKIVVVRA--------------------EELNISGEFFRNK 51 (199)
T ss_dssp CSEEEEECTTBBHHHHHH---H----HHHHHH-----TTCEEEEECG--------------------GGCEEESCHHHHH
T ss_pred CCEEEEECCCCchHHHHH---H----HHHHhc-----CCCEEEEEEc--------------------hheEEeCcHHHHH
Confidence 346899999987654332 2 222222 1367999998 8999999876555
Q ss_pred H
Q 011327 305 L 305 (488)
Q Consensus 305 L 305 (488)
+
T Consensus 52 ~ 52 (199)
T 4b6a_O 52 L 52 (199)
T ss_dssp H
T ss_pred H
Confidence 5
No 43
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=20.39 E-value=47 Score=32.49 Aligned_cols=31 Identities=23% Similarity=0.028 Sum_probs=23.4
Q ss_pred ccccccEEEEEecChHHHHHHHHHHhccChh
Q 011327 259 YPETLHQMFIINAGPGFRLLWNTVKSFLDPK 289 (488)
Q Consensus 259 YPErL~rI~IVNaP~~f~~lwklVKpFLdpk 289 (488)
+.-.=..|+|||+||.+.-..+-+-|+|.+.
T Consensus 233 ~gm~gsGm~viNpP~~l~~~~~~~l~~l~~~ 263 (283)
T 2oo3_A 233 EGMTGCGLWIINPPYTFPSEIKLVLETLTTY 263 (283)
T ss_dssp CSCCEEEEEEESCCTTHHHHHHHHHHHHHHH
T ss_pred CCcCceeEEEECCchhHHHHHHHHHHHHHHH
Confidence 3445568999999999988887777766553
Done!